Query 004814
Match_columns 729
No_of_seqs 850 out of 4170
Neff 10.7
Searched_HMMs 46136
Date Thu Mar 28 13:21:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7.8E-76 1.7E-80 675.1 66.1 592 102-716 65-674 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.9E-75 1.1E-79 668.5 65.7 583 102-726 135-719 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8.9E-71 1.9E-75 618.9 70.2 523 171-699 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 8.9E-70 1.9E-74 610.8 70.2 538 105-664 354-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 7E-63 1.5E-67 554.3 51.4 508 175-699 89-611 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.9E-62 6.2E-67 549.4 54.4 476 205-696 84-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-37 2.4E-42 367.7 79.1 605 101-725 274-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-36 4.8E-41 356.6 79.0 606 101-726 240-865 (899)
9 PRK11447 cellulose synthase su 100.0 8.7E-28 1.9E-32 283.5 73.7 608 101-725 41-738 (1157)
10 PRK11447 cellulose synthase su 100.0 1.3E-26 2.7E-31 273.7 71.1 571 124-726 28-699 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 3.5E-24 7.5E-29 241.1 70.0 588 89-722 45-735 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2E-23 4.3E-28 235.0 67.3 552 130-724 50-703 (987)
13 KOG2002 TPR-containing nuclear 99.9 6.9E-22 1.5E-26 207.4 55.8 568 104-699 146-750 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 2.6E-23 5.7E-28 206.8 40.0 447 246-710 51-501 (966)
15 KOG2002 TPR-containing nuclear 99.9 1.6E-20 3.6E-25 197.2 55.9 593 106-722 112-740 (1018)
16 KOG4626 O-linked N-acetylgluco 99.9 1.9E-22 4.1E-27 200.7 38.2 446 127-603 51-500 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 3.8E-19 8.2E-24 197.6 54.6 255 431-691 307-570 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 6.1E-19 1.3E-23 196.0 53.4 430 175-656 129-570 (615)
19 PRK11788 tetratricopeptide rep 99.9 1.5E-20 3.2E-25 198.4 36.5 302 180-488 42-353 (389)
20 PRK11788 tetratricopeptide rep 99.9 3E-20 6.5E-25 196.1 37.3 259 358-621 45-310 (389)
21 PRK15174 Vi polysaccharide exp 99.9 1.3E-18 2.7E-23 192.5 46.9 335 125-482 43-381 (656)
22 KOG2076 RNA polymerase III tra 99.9 2.7E-16 5.7E-21 164.9 57.1 599 100-724 151-892 (895)
23 PRK10049 pgaA outer membrane p 99.9 7.2E-18 1.6E-22 190.7 48.7 428 240-704 12-466 (765)
24 PRK15174 Vi polysaccharide exp 99.9 7.6E-18 1.7E-22 186.3 47.3 330 178-517 47-381 (656)
25 PRK10049 pgaA outer membrane p 99.9 9E-18 2E-22 189.9 48.5 405 122-551 13-455 (765)
26 PRK14574 hmsH outer membrane p 99.9 2E-16 4.4E-21 175.0 57.0 444 121-587 31-513 (822)
27 PRK14574 hmsH outer membrane p 99.9 4.4E-16 9.6E-21 172.4 54.7 457 212-702 38-521 (822)
28 KOG0495 HAT repeat protein [RN 99.8 1.2E-14 2.5E-19 146.8 58.1 604 87-723 243-876 (913)
29 KOG2003 TPR repeat-containing 99.8 8.9E-18 1.9E-22 161.7 31.9 503 172-724 200-719 (840)
30 KOG2076 RNA polymerase III tra 99.8 2.6E-14 5.7E-19 150.2 55.7 570 98-689 183-892 (895)
31 KOG4422 Uncharacterized conser 99.8 4E-15 8.6E-20 142.9 42.5 331 184-534 126-479 (625)
32 KOG0495 HAT repeat protein [RN 99.8 3.8E-13 8.3E-18 136.0 55.4 547 103-697 330-883 (913)
33 KOG4422 Uncharacterized conser 99.8 1.2E-13 2.5E-18 132.9 45.5 449 208-695 116-593 (625)
34 KOG1915 Cell cycle control pro 99.8 2.9E-13 6.2E-18 131.9 48.6 453 122-602 71-549 (677)
35 KOG1915 Cell cycle control pro 99.7 2.8E-12 6.1E-17 125.1 49.8 438 172-622 72-536 (677)
36 KOG2003 TPR repeat-containing 99.7 1.4E-13 3E-18 133.1 37.0 457 250-724 208-686 (840)
37 KOG1173 Anaphase-promoting com 99.7 3.5E-12 7.6E-17 127.6 39.6 510 173-711 16-535 (611)
38 KOG1155 Anaphase-promoting com 99.7 1.3E-11 2.8E-16 120.5 41.2 362 343-721 159-530 (559)
39 KOG2047 mRNA splicing factor [ 99.6 2.6E-09 5.7E-14 108.7 56.9 525 126-678 104-709 (835)
40 KOG0547 Translocase of outer m 99.6 2E-12 4.3E-17 126.8 33.3 222 464-691 337-565 (606)
41 KOG1155 Anaphase-promoting com 99.6 6.6E-11 1.4E-15 115.7 43.4 257 356-621 235-494 (559)
42 PRK10747 putative protoheme IX 99.6 5.7E-12 1.2E-16 131.7 38.7 251 429-690 129-388 (398)
43 TIGR00540 hemY_coli hemY prote 99.6 4.4E-12 9.5E-17 133.3 38.1 290 395-690 96-397 (409)
44 TIGR00540 hemY_coli hemY prote 99.6 3.8E-12 8.2E-17 133.8 37.2 290 184-481 95-398 (409)
45 PRK10747 putative protoheme IX 99.6 2.9E-12 6.4E-17 133.8 35.8 252 394-656 129-389 (398)
46 KOG1156 N-terminal acetyltrans 99.6 1.8E-10 4E-15 117.4 45.7 453 135-620 18-509 (700)
47 PF13429 TPR_15: Tetratricopep 99.6 4.8E-15 1E-19 147.9 12.3 258 425-689 15-274 (280)
48 KOG0547 Translocase of outer m 99.6 6.2E-11 1.4E-15 116.5 39.7 356 176-552 118-491 (606)
49 KOG2047 mRNA splicing factor [ 99.6 1.2E-08 2.5E-13 104.1 56.1 491 173-690 102-649 (835)
50 PF13429 TPR_15: Tetratricopep 99.6 8.4E-15 1.8E-19 146.2 12.3 258 458-724 13-274 (280)
51 KOG1126 DNA-binding cell divis 99.6 4.2E-13 9.1E-18 137.1 23.6 286 398-696 334-622 (638)
52 KOG1173 Anaphase-promoting com 99.6 1.2E-10 2.7E-15 116.8 40.4 276 388-671 249-530 (611)
53 KOG1126 DNA-binding cell divis 99.6 8.1E-13 1.8E-17 135.0 24.5 282 190-482 336-620 (638)
54 KOG3785 Uncharacterized conser 99.6 3.7E-10 7.9E-15 106.6 39.3 495 184-719 33-541 (557)
55 KOG1156 N-terminal acetyltrans 99.6 1.2E-09 2.6E-14 111.6 45.8 423 256-693 20-469 (700)
56 COG2956 Predicted N-acetylgluc 99.5 4.5E-11 9.7E-16 111.6 31.7 290 396-692 48-347 (389)
57 COG2956 Predicted N-acetylgluc 99.5 5.6E-11 1.2E-15 111.0 31.8 270 222-498 49-325 (389)
58 COG3071 HemY Uncharacterized e 99.5 9.4E-11 2E-15 113.1 33.4 291 396-696 97-394 (400)
59 KOG4162 Predicted calmodulin-b 99.5 5.9E-09 1.3E-13 108.7 48.7 488 182-691 236-782 (799)
60 COG3071 HemY Uncharacterized e 99.5 1.1E-10 2.3E-15 112.7 33.4 284 292-585 98-388 (400)
61 KOG3785 Uncharacterized conser 99.5 3.8E-10 8.3E-15 106.5 34.9 449 217-699 31-495 (557)
62 PRK12370 invasion protein regu 99.5 3.8E-11 8.1E-16 131.2 33.3 234 121-376 253-501 (553)
63 KOG4318 Bicoid mRNA stability 99.5 8.1E-11 1.8E-15 123.6 33.2 252 195-468 12-286 (1088)
64 KOG4162 Predicted calmodulin-b 99.5 1.3E-08 2.7E-13 106.4 46.6 479 220-721 239-777 (799)
65 KOG1127 TPR repeat-containing 99.5 8.8E-09 1.9E-13 110.0 44.2 580 100-721 470-1098(1238)
66 KOG4318 Bicoid mRNA stability 99.4 2.1E-09 4.6E-14 113.3 38.0 131 563-696 464-598 (1088)
67 PF12569 NARP1: NMDA receptor- 99.4 7.3E-09 1.6E-13 109.2 41.3 294 178-481 9-333 (517)
68 PRK12370 invasion protein regu 99.4 9.4E-11 2E-15 128.1 28.2 249 104-377 277-535 (553)
69 KOG0985 Vesicle coat protein c 99.4 1.7E-07 3.7E-12 100.2 49.9 195 100-302 521-748 (1666)
70 KOG2376 Signal recognition par 99.4 5.9E-08 1.3E-12 98.4 42.6 444 179-654 18-517 (652)
71 TIGR02521 type_IV_pilW type IV 99.4 4.5E-10 9.8E-15 109.1 27.0 200 172-375 30-230 (234)
72 TIGR02521 type_IV_pilW type IV 99.4 3.8E-10 8.2E-15 109.6 26.2 203 122-342 29-232 (234)
73 PF12569 NARP1: NMDA receptor- 99.4 7.6E-08 1.7E-12 101.6 43.9 295 130-447 10-334 (517)
74 KOG1129 TPR repeat-containing 99.4 7.4E-11 1.6E-15 110.0 18.7 231 177-413 227-459 (478)
75 KOG1174 Anaphase-promoting com 99.4 5.7E-08 1.2E-12 94.1 38.6 272 416-698 230-504 (564)
76 KOG1129 TPR repeat-containing 99.3 2.4E-10 5.2E-15 106.7 21.3 229 212-447 227-458 (478)
77 KOG2376 Signal recognition par 99.3 3.3E-07 7.2E-12 93.1 43.8 449 210-688 14-516 (652)
78 KOG1840 Kinesin light chain [C 99.3 2.5E-09 5.4E-14 111.2 28.7 195 496-690 249-477 (508)
79 KOG0985 Vesicle coat protein c 99.3 2.6E-06 5.5E-11 91.6 48.5 375 158-577 969-1373(1666)
80 KOG1174 Anaphase-promoting com 99.3 1E-06 2.2E-11 85.7 41.7 267 347-622 231-500 (564)
81 KOG1127 TPR repeat-containing 99.3 1.6E-07 3.4E-12 100.7 39.0 479 189-690 474-994 (1238)
82 KOG3617 WD40 and TPR repeat-co 99.3 3.2E-06 7E-11 88.9 47.5 327 123-514 725-1106(1416)
83 KOG0548 Molecular co-chaperone 99.2 7.3E-08 1.6E-12 96.9 34.3 422 250-710 9-471 (539)
84 KOG3616 Selective LIM binding 99.2 2.8E-07 6E-12 95.4 38.7 239 175-448 767-1025(1636)
85 KOG3617 WD40 and TPR repeat-co 99.2 1.1E-06 2.4E-11 92.3 42.5 321 102-480 742-1107(1416)
86 PRK11189 lipoprotein NlpI; Pro 99.2 1E-08 2.2E-13 102.6 27.4 237 467-714 40-286 (296)
87 PRK11189 lipoprotein NlpI; Pro 99.2 1.2E-08 2.5E-13 102.1 27.1 218 103-343 41-266 (296)
88 PF13041 PPR_2: PPR repeat fam 99.2 4.4E-11 9.6E-16 83.3 6.4 49 241-289 1-49 (50)
89 KOG1840 Kinesin light chain [C 99.2 1.6E-08 3.4E-13 105.3 27.7 128 493-620 330-477 (508)
90 COG3063 PilF Tfp pilus assembl 99.2 3.1E-08 6.8E-13 88.8 24.8 200 173-376 35-235 (250)
91 COG3063 PilF Tfp pilus assembl 99.2 3.8E-08 8.3E-13 88.3 24.4 208 491-704 38-246 (250)
92 KOG0548 Molecular co-chaperone 99.1 3E-07 6.5E-12 92.6 32.8 421 131-622 9-455 (539)
93 PF13041 PPR_2: PPR repeat fam 99.1 1.4E-10 3.1E-15 80.7 6.5 49 276-324 1-49 (50)
94 KOG2053 Mitochondrial inherita 99.1 2.2E-05 4.8E-10 84.1 47.5 531 134-704 19-619 (932)
95 KOG3616 Selective LIM binding 99.1 4.9E-06 1.1E-10 86.4 40.8 248 392-688 715-962 (1636)
96 cd05804 StaR_like StaR_like; a 99.1 4.9E-07 1.1E-11 94.1 35.2 203 123-341 5-214 (355)
97 cd05804 StaR_like StaR_like; a 99.1 7.8E-07 1.7E-11 92.6 34.7 200 173-377 6-215 (355)
98 KOG4340 Uncharacterized conser 99.1 4.2E-07 9.1E-12 84.4 27.5 195 127-345 13-210 (459)
99 KOG4340 Uncharacterized conser 99.1 9.7E-07 2.1E-11 82.0 29.5 291 176-478 13-335 (459)
100 PRK04841 transcriptional regul 99.0 2.1E-05 4.6E-10 92.9 48.3 373 247-622 345-760 (903)
101 KOG2053 Mitochondrial inherita 99.0 6.4E-05 1.4E-09 80.8 45.4 523 102-670 23-620 (932)
102 KOG0624 dsRNA-activated protei 99.0 1.6E-05 3.5E-10 75.6 34.6 320 121-483 35-371 (504)
103 PRK04841 transcriptional regul 98.9 7.1E-06 1.5E-10 96.9 39.9 336 357-692 383-760 (903)
104 KOG0624 dsRNA-activated protei 98.9 8.5E-06 1.8E-10 77.4 31.5 190 462-657 164-370 (504)
105 PLN02789 farnesyltranstransfer 98.9 1.8E-06 3.9E-11 86.2 27.6 205 136-360 49-267 (320)
106 KOG1914 mRNA cleavage and poly 98.9 0.00013 2.8E-09 74.1 42.9 151 504-656 347-500 (656)
107 PLN02789 farnesyltranstransfer 98.8 3E-06 6.4E-11 84.6 26.9 215 175-395 39-267 (320)
108 PF04733 Coatomer_E: Coatomer 98.8 1.1E-07 2.3E-12 93.7 16.0 249 392-656 10-264 (290)
109 KOG1125 TPR repeat-containing 98.8 6.9E-07 1.5E-11 90.9 21.7 218 184-408 296-523 (579)
110 KOG1914 mRNA cleavage and poly 98.8 0.00024 5.2E-09 72.1 40.9 428 233-690 11-499 (656)
111 KOG1125 TPR repeat-containing 98.8 7.2E-07 1.6E-11 90.8 21.0 252 427-684 294-563 (579)
112 PF04733 Coatomer_E: Coatomer 98.8 5.4E-07 1.2E-11 88.7 18.1 256 426-699 9-270 (290)
113 KOG1128 Uncharacterized conser 98.7 4.6E-06 9.9E-11 87.3 23.7 220 450-691 395-615 (777)
114 KOG1128 Uncharacterized conser 98.7 7E-06 1.5E-10 86.0 24.3 285 106-411 324-615 (777)
115 KOG1070 rRNA processing protei 98.7 1.9E-05 4.1E-10 88.3 27.7 232 418-653 1458-1696(1710)
116 COG5010 TadD Flp pilus assembl 98.7 6.2E-06 1.3E-10 76.1 20.3 166 520-690 64-229 (257)
117 KOG1070 rRNA processing protei 98.6 2.3E-05 5E-10 87.6 27.2 204 243-451 1458-1667(1710)
118 PRK10370 formate-dependent nit 98.6 5.8E-06 1.2E-10 76.9 19.7 117 571-690 52-171 (198)
119 TIGR03302 OM_YfiO outer membra 98.6 6.7E-06 1.5E-10 79.8 21.1 191 121-342 30-232 (235)
120 COG5010 TadD Flp pilus assembl 98.6 7E-06 1.5E-10 75.8 19.2 125 245-372 102-226 (257)
121 TIGR03302 OM_YfiO outer membra 98.6 7E-06 1.5E-10 79.6 20.8 184 487-690 32-230 (235)
122 PRK15179 Vi polysaccharide bio 98.6 2.8E-06 6E-11 93.5 19.6 162 103-285 67-229 (694)
123 PF12854 PPR_1: PPR repeat 98.6 7.4E-08 1.6E-12 60.0 4.1 32 238-269 2-33 (34)
124 PRK15359 type III secretion sy 98.6 3.5E-06 7.5E-11 74.0 15.8 118 579-704 14-131 (144)
125 PF12854 PPR_1: PPR repeat 98.6 9.1E-08 2E-12 59.6 4.0 32 343-374 2-33 (34)
126 PRK10370 formate-dependent nit 98.5 3E-06 6.5E-11 78.8 15.4 119 137-272 52-173 (198)
127 PRK15359 type III secretion sy 98.5 6.8E-06 1.5E-10 72.2 16.2 93 178-272 29-121 (144)
128 PRK14720 transcript cleavage f 98.5 6.1E-05 1.3E-09 83.8 26.7 238 381-674 29-268 (906)
129 PRK14720 transcript cleavage f 98.5 6.6E-05 1.4E-09 83.5 25.5 221 122-394 29-268 (906)
130 PRK15179 Vi polysaccharide bio 98.5 8.3E-05 1.8E-09 82.1 26.3 134 520-656 83-216 (694)
131 KOG3081 Vesicle coat complex C 98.4 0.00023 5E-09 65.9 24.1 139 355-504 115-257 (299)
132 KOG3081 Vesicle coat complex C 98.4 0.0002 4.4E-09 66.3 22.5 149 531-690 116-269 (299)
133 TIGR02552 LcrH_SycD type III s 98.4 1.6E-05 3.4E-10 69.5 14.8 98 173-272 17-114 (135)
134 TIGR02552 LcrH_SycD type III s 98.3 1.6E-05 3.5E-10 69.4 14.5 115 581-700 6-120 (135)
135 COG4783 Putative Zn-dependent 98.3 0.00023 5.1E-09 71.7 23.0 138 498-657 316-454 (484)
136 COG4783 Putative Zn-dependent 98.3 0.00037 8E-09 70.3 23.8 151 528-701 311-462 (484)
137 KOG3060 Uncharacterized conser 98.3 0.00089 1.9E-08 61.6 23.5 189 465-657 24-220 (289)
138 KOG3060 Uncharacterized conser 98.2 0.00044 9.6E-09 63.6 20.9 192 499-696 23-222 (289)
139 PF09976 TPR_21: Tetratricopep 98.2 9.1E-05 2E-09 65.4 15.6 125 561-689 15-144 (145)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.5E-05 1.8E-09 75.7 15.2 122 129-270 174-295 (395)
141 PF09976 TPR_21: Tetratricopep 98.0 0.00022 4.7E-09 62.9 15.1 116 186-303 24-143 (145)
142 KOG0550 Molecular chaperone (D 98.0 0.0021 4.6E-08 63.4 21.5 152 497-657 178-350 (486)
143 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00035 7.5E-09 71.4 16.6 121 528-655 174-295 (395)
144 PF07079 DUF1347: Protein of u 97.9 0.028 6.2E-07 56.5 45.3 277 183-482 16-327 (549)
145 KOG0553 TPR repeat-containing 97.9 0.00012 2.6E-09 69.2 11.5 97 603-704 91-188 (304)
146 KOG2041 WD40 repeat protein [G 97.9 0.053 1.1E-06 57.3 31.0 381 205-656 689-1085(1189)
147 cd00189 TPR Tetratricopeptide 97.9 0.00028 6E-09 56.7 12.0 93 596-690 3-95 (100)
148 TIGR00756 PPR pentatricopeptid 97.9 2.3E-05 5E-10 49.5 4.2 33 245-277 2-34 (35)
149 KOG2041 WD40 repeat protein [G 97.8 0.015 3.3E-07 61.2 26.0 366 275-689 689-1083(1189)
150 PRK10153 DNA-binding transcrip 97.8 0.0012 2.5E-08 70.9 18.8 74 627-704 419-492 (517)
151 PRK15363 pathogenicity island 97.8 0.00087 1.9E-08 57.9 14.3 96 594-691 36-131 (157)
152 PLN03088 SGT1, suppressor of 97.8 0.00043 9.4E-09 71.0 14.6 90 566-657 10-99 (356)
153 TIGR00756 PPR pentatricopeptid 97.8 4.6E-05 1E-09 48.1 4.4 30 316-345 3-32 (35)
154 KOG0550 Molecular chaperone (D 97.7 0.017 3.7E-07 57.3 23.2 273 180-482 56-350 (486)
155 PF12895 Apc3: Anaphase-promot 97.7 5.7E-05 1.2E-09 59.4 5.5 81 606-688 2-83 (84)
156 cd00189 TPR Tetratricopeptide 97.7 0.00045 9.6E-09 55.5 11.2 94 176-271 3-96 (100)
157 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.065 1.4E-06 53.8 38.2 135 558-698 397-535 (660)
158 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.001 2.2E-08 56.4 13.5 96 177-272 6-105 (119)
159 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00087 1.9E-08 56.8 12.9 97 595-691 4-104 (119)
160 PF13812 PPR_3: Pentatricopept 97.7 6.2E-05 1.3E-09 47.2 4.2 32 245-276 3-34 (34)
161 PF14938 SNAP: Soluble NSF att 97.7 0.0058 1.3E-07 60.8 20.3 175 172-377 34-225 (282)
162 PF12895 Apc3: Anaphase-promot 97.7 8.5E-05 1.8E-09 58.4 5.4 81 186-268 2-83 (84)
163 PF13812 PPR_3: Pentatricopept 97.6 0.0001 2.2E-09 46.1 4.4 31 595-625 3-33 (34)
164 PLN03088 SGT1, suppressor of 97.6 0.0014 2.9E-08 67.4 14.9 91 180-272 9-99 (356)
165 PRK02603 photosystem I assembl 97.6 0.0026 5.6E-08 58.0 15.3 115 560-698 37-153 (172)
166 PRK10866 outer membrane biogen 97.6 0.011 2.4E-07 56.9 20.0 71 123-205 31-101 (243)
167 KOG1130 Predicted G-alpha GTPa 97.6 0.0016 3.5E-08 63.9 14.0 96 560-655 237-342 (639)
168 PRK15363 pathogenicity island 97.6 0.0016 3.5E-08 56.4 12.5 96 175-272 37-132 (157)
169 PRK02603 photosystem I assembl 97.6 0.0025 5.5E-08 58.1 14.9 94 172-266 34-129 (172)
170 PF10037 MRP-S27: Mitochondria 97.6 0.0012 2.5E-08 67.9 13.6 123 484-606 62-186 (429)
171 PF05843 Suf: Suppressor of fo 97.6 0.001 2.2E-08 65.9 12.9 129 525-656 3-135 (280)
172 CHL00033 ycf3 photosystem I as 97.6 0.0027 5.8E-08 57.7 14.4 102 593-697 35-152 (168)
173 PF14938 SNAP: Soluble NSF att 97.5 0.019 4.2E-07 57.0 21.6 175 127-342 38-225 (282)
174 PF14559 TPR_19: Tetratricopep 97.5 0.0003 6.5E-09 52.6 6.7 65 639-706 2-66 (68)
175 PF10037 MRP-S27: Mitochondria 97.5 0.0014 3E-08 67.3 13.4 122 275-396 63-186 (429)
176 KOG0553 TPR repeat-containing 97.5 0.00099 2.1E-08 63.2 11.1 97 183-283 91-187 (304)
177 PRK10153 DNA-binding transcrip 97.5 0.006 1.3E-07 65.5 18.4 143 519-667 333-490 (517)
178 COG4700 Uncharacterized protei 97.5 0.014 3.1E-07 51.1 17.0 153 532-690 65-220 (251)
179 COG4235 Cytochrome c biogenesi 97.5 0.0044 9.6E-08 59.3 15.3 118 582-704 146-266 (287)
180 CHL00033 ycf3 photosystem I as 97.5 0.002 4.4E-08 58.5 12.9 86 121-219 32-117 (168)
181 PF12688 TPR_5: Tetratrico pep 97.5 0.0051 1.1E-07 51.4 13.8 106 177-288 5-116 (120)
182 PF01535 PPR: PPR repeat; Int 97.5 0.00016 3.4E-09 44.1 3.5 29 245-273 2-30 (31)
183 KOG1130 Predicted G-alpha GTPa 97.5 0.0011 2.3E-08 65.1 10.8 285 251-551 25-343 (639)
184 PF13432 TPR_16: Tetratricopep 97.5 0.00037 8E-09 51.5 6.2 61 634-697 3-63 (65)
185 PF13414 TPR_11: TPR repeat; P 97.5 0.00058 1.2E-08 51.2 7.3 65 123-202 2-67 (69)
186 PF08579 RPM2: Mitochondrial r 97.4 0.0022 4.8E-08 51.3 10.4 77 179-255 31-116 (120)
187 PRK10866 outer membrane biogen 97.4 0.074 1.6E-06 51.3 23.3 58 214-272 38-98 (243)
188 PF05843 Suf: Suppressor of fo 97.4 0.0023 5.1E-08 63.2 13.0 129 210-341 3-135 (280)
189 PF13414 TPR_11: TPR repeat; P 97.4 0.00049 1.1E-08 51.6 6.4 63 627-690 2-65 (69)
190 COG4235 Cytochrome c biogenesi 97.4 0.0056 1.2E-07 58.6 14.7 99 172-272 155-256 (287)
191 COG4700 Uncharacterized protei 97.4 0.057 1.2E-06 47.6 19.2 133 240-374 86-219 (251)
192 PF01535 PPR: PPR repeat; Int 97.4 0.00021 4.5E-09 43.6 3.3 29 280-308 2-30 (31)
193 PF07079 DUF1347: Protein of u 97.3 0.22 4.8E-06 50.4 48.7 446 217-689 15-521 (549)
194 PF08579 RPM2: Mitochondrial r 97.3 0.003 6.5E-08 50.6 9.8 40 250-289 32-72 (120)
195 COG3898 Uncharacterized membra 97.3 0.21 4.6E-06 49.4 35.9 151 96-272 61-217 (531)
196 KOG2796 Uncharacterized conser 97.3 0.16 3.6E-06 47.4 23.3 137 563-702 182-323 (366)
197 PF13525 YfiO: Outer membrane 97.2 0.034 7.4E-07 52.1 18.0 69 124-204 5-73 (203)
198 PF13432 TPR_16: Tetratricopep 97.2 0.0014 3E-08 48.4 7.0 54 182-236 6-59 (65)
199 COG3898 Uncharacterized membra 97.2 0.27 5.9E-06 48.7 31.0 252 431-698 133-398 (531)
200 PF14559 TPR_19: Tetratricopep 97.2 0.0012 2.6E-08 49.3 6.3 54 135-203 2-55 (68)
201 PF12688 TPR_5: Tetratrico pep 97.1 0.023 5.1E-07 47.4 14.0 54 288-341 11-66 (120)
202 KOG2796 Uncharacterized conser 97.1 0.23 5E-06 46.4 22.9 236 125-378 70-316 (366)
203 PF06239 ECSIT: Evolutionarily 97.1 0.011 2.4E-07 53.8 12.6 103 241-362 45-152 (228)
204 PF04840 Vps16_C: Vps16, C-ter 97.1 0.38 8.2E-06 48.3 28.2 104 352-475 181-284 (319)
205 KOG2280 Vacuolar assembly/sort 96.9 0.8 1.7E-05 49.5 29.1 345 307-688 426-795 (829)
206 PF13371 TPR_9: Tetratricopept 96.9 0.0049 1.1E-07 46.7 7.8 65 636-703 3-67 (73)
207 PF04840 Vps16_C: Vps16, C-ter 96.9 0.54 1.2E-05 47.2 30.0 110 560-689 179-288 (319)
208 PF13525 YfiO: Outer membrane 96.9 0.1 2.3E-06 48.8 17.9 64 174-237 6-71 (203)
209 PF06239 ECSIT: Evolutionarily 96.9 0.0094 2E-07 54.2 10.0 90 185-293 64-153 (228)
210 PRK10803 tol-pal system protei 96.8 0.021 4.5E-07 55.5 12.9 92 596-690 146-244 (263)
211 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.69 1.5E-05 46.8 38.3 143 522-670 396-542 (660)
212 KOG1538 Uncharacterized conser 96.8 0.24 5.1E-06 52.2 20.3 88 593-691 747-845 (1081)
213 PRK10803 tol-pal system protei 96.7 0.028 6.2E-07 54.6 13.1 98 175-272 145-246 (263)
214 PRK15331 chaperone protein Sic 96.7 0.077 1.7E-06 46.4 14.0 90 600-691 44-133 (165)
215 PF13281 DUF4071: Domain of un 96.7 0.84 1.8E-05 46.3 22.9 172 492-691 145-333 (374)
216 KOG2114 Vacuolar assembly/sort 96.7 1.4 3.1E-05 48.3 26.3 122 172-303 333-456 (933)
217 PF03704 BTAD: Bacterial trans 96.6 0.16 3.4E-06 44.8 16.0 70 630-700 64-138 (146)
218 PF13371 TPR_9: Tetratricopept 96.6 0.0074 1.6E-07 45.7 6.3 57 132-203 3-59 (73)
219 KOG0543 FKBP-type peptidyl-pro 96.5 0.034 7.3E-07 55.5 11.8 125 563-690 213-353 (397)
220 PF13424 TPR_12: Tetratricopep 96.4 0.01 2.3E-07 45.6 6.5 62 629-690 6-73 (78)
221 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.075 1.6E-06 54.4 13.3 70 121-202 72-141 (453)
222 KOG1941 Acetylcholine receptor 96.2 0.53 1.1E-05 46.2 17.6 127 529-655 128-273 (518)
223 PRK15331 chaperone protein Sic 96.2 0.085 1.8E-06 46.1 11.2 92 179-272 43-134 (165)
224 KOG2114 Vacuolar assembly/sort 96.2 2.7 5.9E-05 46.3 27.6 184 124-340 334-517 (933)
225 KOG1538 Uncharacterized conser 96.2 0.8 1.7E-05 48.5 19.7 56 347-411 746-801 (1081)
226 COG4105 ComL DNA uptake lipopr 96.1 1.3 2.7E-05 42.0 20.9 81 126-219 37-117 (254)
227 PF13424 TPR_12: Tetratricopep 96.1 0.025 5.4E-07 43.4 7.0 70 124-201 5-74 (78)
228 COG0457 NrfG FOG: TPR repeat [ 96.1 1.4 3E-05 41.9 30.8 198 489-690 60-263 (291)
229 PF13281 DUF4071: Domain of un 96.0 1 2.2E-05 45.7 19.5 31 452-482 304-334 (374)
230 KOG0543 FKBP-type peptidyl-pro 96.0 0.071 1.5E-06 53.3 11.2 98 132-237 216-320 (397)
231 PF10300 DUF3808: Protein of u 96.0 0.24 5.3E-06 52.9 15.9 118 186-306 246-375 (468)
232 PRK11906 transcriptional regul 95.9 0.58 1.3E-05 48.2 17.5 147 538-690 273-434 (458)
233 KOG2610 Uncharacterized conser 95.9 0.53 1.2E-05 45.7 16.0 153 465-619 115-273 (491)
234 PF03704 BTAD: Bacterial trans 95.9 0.052 1.1E-06 47.8 8.9 55 599-654 68-122 (146)
235 KOG1258 mRNA processing protei 95.9 3.1 6.6E-05 44.2 35.9 186 452-643 296-490 (577)
236 PF04184 ST7: ST7 protein; In 95.7 0.64 1.4E-05 48.0 16.6 60 597-656 263-323 (539)
237 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.18 3.9E-06 51.8 12.7 65 556-622 73-141 (453)
238 COG1729 Uncharacterized protei 95.7 0.13 2.7E-06 49.0 10.9 64 173-236 178-243 (262)
239 COG3118 Thioredoxin domain-con 95.7 1.5 3.2E-05 42.3 17.9 119 500-621 146-264 (304)
240 KOG4555 TPR repeat-containing 95.6 0.45 9.7E-06 39.4 12.0 90 567-658 52-145 (175)
241 COG3118 Thioredoxin domain-con 95.6 0.65 1.4E-05 44.7 15.0 143 132-292 142-286 (304)
242 PF04053 Coatomer_WDAD: Coatom 95.5 0.45 9.7E-06 50.1 15.2 128 316-476 298-425 (443)
243 KOG1585 Protein required for f 95.5 2.2 4.8E-05 39.8 18.3 85 280-374 33-117 (308)
244 PF09205 DUF1955: Domain of un 95.5 1.2 2.6E-05 37.1 14.1 61 528-589 91-151 (161)
245 PRK11906 transcriptional regul 95.4 2 4.4E-05 44.4 19.1 160 492-656 257-435 (458)
246 KOG1941 Acetylcholine receptor 95.4 0.74 1.6E-05 45.3 14.8 228 463-690 16-273 (518)
247 PF10300 DUF3808: Protein of u 95.3 0.82 1.8E-05 48.9 17.1 160 528-690 193-374 (468)
248 PF13512 TPR_18: Tetratricopep 95.3 0.36 7.9E-06 41.3 11.3 83 124-218 10-92 (142)
249 COG4785 NlpI Lipoprotein NlpI, 95.2 2.1 4.6E-05 39.1 16.0 175 142-342 83-266 (297)
250 KOG4555 TPR repeat-containing 95.2 0.3 6.6E-06 40.4 9.9 91 133-238 52-145 (175)
251 PF09205 DUF1955: Domain of un 95.1 1.7 3.7E-05 36.3 14.8 68 627-695 85-152 (161)
252 PF12921 ATP13: Mitochondrial 95.1 0.34 7.3E-06 41.0 10.5 79 523-601 2-96 (126)
253 PF13428 TPR_14: Tetratricopep 95.0 0.067 1.4E-06 35.5 5.0 39 175-214 3-41 (44)
254 PF12921 ATP13: Mitochondrial 95.0 0.29 6.3E-06 41.4 9.8 78 123-200 1-79 (126)
255 KOG1585 Protein required for f 94.8 3.3 7.1E-05 38.7 16.5 205 455-686 33-250 (308)
256 KOG2610 Uncharacterized conser 94.8 1.2 2.6E-05 43.4 14.3 156 498-656 113-275 (491)
257 PF04053 Coatomer_WDAD: Coatom 94.8 0.74 1.6E-05 48.5 14.4 129 281-442 298-426 (443)
258 smart00299 CLH Clathrin heavy 94.7 2.2 4.8E-05 37.0 15.3 84 129-234 12-95 (140)
259 COG1729 Uncharacterized protei 94.7 0.5 1.1E-05 45.0 11.5 88 603-690 151-242 (262)
260 COG0457 NrfG FOG: TPR repeat [ 94.6 4.1 8.9E-05 38.5 30.5 87 568-657 177-265 (291)
261 PF08631 SPO22: Meiosis protei 94.6 5.2 0.00011 39.6 27.2 165 524-690 85-273 (278)
262 KOG1258 mRNA processing protei 94.5 7.8 0.00017 41.3 39.4 396 189-607 61-489 (577)
263 PF13428 TPR_14: Tetratricopep 94.4 0.095 2.1E-06 34.8 4.6 33 665-699 3-35 (44)
264 KOG1550 Extracellular protein 94.3 10 0.00022 41.8 23.6 272 398-690 227-536 (552)
265 PF08631 SPO22: Meiosis protei 94.3 6 0.00013 39.2 25.9 123 184-307 4-150 (278)
266 smart00299 CLH Clathrin heavy 94.3 2.7 5.8E-05 36.5 14.9 84 213-304 12-95 (140)
267 KOG1920 IkappaB kinase complex 94.0 15 0.00033 42.5 27.3 30 381-411 789-820 (1265)
268 COG4105 ComL DNA uptake lipopr 93.8 6.3 0.00014 37.5 21.4 53 600-653 174-229 (254)
269 PF04184 ST7: ST7 protein; In 93.2 12 0.00027 39.1 19.4 56 564-619 265-321 (539)
270 KOG4234 TPR repeat-containing 93.1 3.3 7.1E-05 37.4 12.7 92 603-698 105-201 (271)
271 KOG3941 Intermediate in Toll s 93.1 0.64 1.4E-05 44.1 8.9 69 225-293 89-173 (406)
272 PF13176 TPR_7: Tetratricopept 93.1 0.2 4.4E-06 31.4 4.1 26 665-690 1-26 (36)
273 COG4649 Uncharacterized protei 93.0 6.1 0.00013 34.9 15.6 132 569-700 69-204 (221)
274 KOG2280 Vacuolar assembly/sort 92.7 18 0.0004 39.7 32.8 109 489-616 685-793 (829)
275 PRK09687 putative lyase; Provi 92.7 11 0.00024 37.2 28.3 128 557-700 141-269 (280)
276 KOG1550 Extracellular protein 92.3 21 0.00045 39.4 27.7 273 363-658 227-539 (552)
277 PF00515 TPR_1: Tetratricopept 92.1 0.28 6E-06 30.2 3.8 26 665-690 3-28 (34)
278 PF13431 TPR_17: Tetratricopep 92.0 0.19 4.2E-06 31.0 2.9 32 147-193 2-33 (34)
279 KOG3941 Intermediate in Toll s 92.0 1.3 2.9E-05 42.0 9.4 31 367-397 142-172 (406)
280 PF13512 TPR_18: Tetratricopep 91.9 6.3 0.00014 33.9 12.7 82 173-254 10-93 (142)
281 PF09613 HrpB1_HrpK: Bacterial 91.7 2.4 5.1E-05 37.2 10.1 117 594-718 8-129 (160)
282 COG3629 DnrI DNA-binding trans 91.7 1.9 4E-05 41.9 10.5 60 175-235 155-214 (280)
283 PF10345 Cohesin_load: Cohesin 91.6 27 0.00058 39.2 43.3 184 190-374 38-251 (608)
284 KOG4648 Uncharacterized conser 91.6 0.77 1.7E-05 44.7 7.7 53 567-620 106-158 (536)
285 PF13431 TPR_17: Tetratricopep 91.6 0.25 5.4E-06 30.5 3.0 32 651-683 2-33 (34)
286 PF10602 RPN7: 26S proteasome 91.4 2.8 6E-05 38.1 10.9 64 173-236 36-101 (177)
287 KOG1920 IkappaB kinase complex 91.3 35 0.00075 39.9 29.6 186 394-620 862-1053(1265)
288 PF10345 Cohesin_load: Cohesin 91.2 29 0.00063 38.9 43.6 169 172-341 58-253 (608)
289 PF13170 DUF4003: Protein of u 91.1 17 0.00038 36.1 20.8 23 331-353 80-102 (297)
290 PF09613 HrpB1_HrpK: Bacterial 91.1 10 0.00022 33.4 13.3 95 179-277 16-111 (160)
291 COG2976 Uncharacterized protei 91.0 12 0.00025 34.0 14.4 89 600-693 96-189 (207)
292 PF07719 TPR_2: Tetratricopept 90.8 0.41 8.9E-06 29.3 3.6 26 665-690 3-28 (34)
293 COG3629 DnrI DNA-binding trans 90.8 2.7 5.8E-05 40.9 10.6 55 564-619 159-213 (280)
294 PF00515 TPR_1: Tetratricopept 90.8 0.58 1.3E-05 28.7 4.2 32 125-156 2-33 (34)
295 COG4649 Uncharacterized protei 90.8 11 0.00024 33.3 15.4 53 184-236 69-122 (221)
296 COG2909 MalT ATP-dependent tra 90.7 33 0.00072 38.7 30.1 318 334-688 332-684 (894)
297 PF13170 DUF4003: Protein of u 90.6 19 0.00042 35.8 17.9 130 540-671 79-225 (297)
298 PF04097 Nic96: Nup93/Nic96; 90.3 34 0.00075 38.2 23.2 28 454-481 325-355 (613)
299 PF10602 RPN7: 26S proteasome 90.2 3.8 8.2E-05 37.2 10.6 61 245-305 38-100 (177)
300 PF13176 TPR_7: Tetratricopept 90.0 0.71 1.5E-05 28.9 4.2 27 630-656 1-27 (36)
301 KOG2396 HAT (Half-A-TPR) repea 90.0 28 0.0006 36.5 39.4 92 562-656 464-558 (568)
302 PF07035 Mic1: Colon cancer-as 89.7 14 0.00031 32.9 15.1 22 237-258 23-44 (167)
303 PF07719 TPR_2: Tetratricopept 89.5 0.84 1.8E-05 27.9 4.2 32 125-156 2-33 (34)
304 PF07035 Mic1: Colon cancer-as 89.3 15 0.00034 32.7 15.0 34 193-226 14-47 (167)
305 PF02259 FAT: FAT domain; Int 89.0 30 0.00064 35.6 21.8 54 425-482 5-58 (352)
306 COG2976 Uncharacterized protei 88.4 19 0.00042 32.7 15.3 114 541-658 70-189 (207)
307 PRK09687 putative lyase; Provi 88.3 28 0.00061 34.4 28.2 201 452-673 67-277 (280)
308 KOG4648 Uncharacterized conser 88.1 2.9 6.2E-05 41.0 8.4 96 178-277 102-197 (536)
309 KOG0276 Vesicle coat complex C 88.0 4.8 0.0001 42.7 10.5 26 348-373 666-691 (794)
310 TIGR02561 HrpB1_HrpK type III 87.9 5.9 0.00013 34.2 9.3 63 594-658 8-74 (153)
311 COG4785 NlpI Lipoprotein NlpI, 87.4 24 0.00052 32.6 18.5 81 190-272 82-162 (297)
312 KOG4570 Uncharacterized conser 87.3 5.8 0.00013 38.6 9.8 98 558-657 64-164 (418)
313 PF04097 Nic96: Nup93/Nic96; 86.1 63 0.0014 36.2 25.9 88 425-517 265-356 (613)
314 PF06552 TOM20_plant: Plant sp 85.8 7.1 0.00015 34.9 9.0 77 187-272 49-136 (186)
315 KOG1464 COP9 signalosome, subu 85.5 35 0.00075 32.6 17.9 158 137-305 40-218 (440)
316 PF06552 TOM20_plant: Plant sp 85.2 4.6 9.9E-05 36.1 7.5 25 645-671 97-121 (186)
317 PF13181 TPR_8: Tetratricopept 85.1 1.1 2.4E-05 27.4 2.9 26 665-690 3-28 (34)
318 PF08424 NRDE-2: NRDE-2, neces 85.0 47 0.001 33.7 17.7 60 143-218 50-109 (321)
319 KOG0276 Vesicle coat complex C 84.8 12 0.00027 39.9 11.5 131 315-478 616-746 (794)
320 PF11207 DUF2989: Protein of u 84.4 15 0.00032 33.7 10.6 73 610-683 123-198 (203)
321 KOG4234 TPR repeat-containing 84.3 15 0.00033 33.3 10.3 95 132-237 103-197 (271)
322 KOG2063 Vacuolar assembly/sort 84.1 46 0.001 38.2 16.5 27 175-201 506-532 (877)
323 TIGR02561 HrpB1_HrpK type III 83.8 28 0.0006 30.2 11.3 53 184-238 21-74 (153)
324 PRK15180 Vi polysaccharide bio 83.6 12 0.00025 38.7 10.4 128 565-697 296-423 (831)
325 PF13374 TPR_10: Tetratricopep 83.3 3 6.5E-05 26.8 4.6 27 664-690 3-29 (42)
326 KOG2396 HAT (Half-A-TPR) repea 83.1 66 0.0014 33.9 42.6 79 192-272 90-169 (568)
327 PF07575 Nucleopor_Nup85: Nup8 83.0 63 0.0014 35.9 17.3 147 543-708 390-539 (566)
328 PF02259 FAT: FAT domain; Int 82.3 63 0.0014 33.1 24.9 54 389-446 4-57 (352)
329 PF11207 DUF2989: Protein of u 82.2 12 0.00027 34.2 9.2 71 576-647 124-197 (203)
330 PF10155 DUF2363: Uncharacteri 81.9 21 0.00046 30.1 9.9 13 102-114 3-15 (126)
331 KOG0890 Protein kinase of the 81.6 1.7E+02 0.0036 37.5 31.9 321 248-588 1388-1732(2382)
332 PF13374 TPR_10: Tetratricopep 81.3 3.9 8.4E-05 26.2 4.5 28 629-656 3-30 (42)
333 KOG2066 Vacuolar assembly/sort 81.3 98 0.0021 34.6 27.5 22 459-480 511-532 (846)
334 KOG2062 26S proteasome regulat 81.2 95 0.0021 34.5 34.5 158 179-342 65-239 (929)
335 PF07575 Nucleopor_Nup85: Nup8 80.4 77 0.0017 35.2 16.8 27 172-199 148-174 (566)
336 PF13181 TPR_8: Tetratricopept 80.4 3.9 8.4E-05 24.8 4.0 31 125-155 2-32 (34)
337 COG3947 Response regulator con 80.2 61 0.0013 31.6 17.7 57 598-655 284-340 (361)
338 KOG4570 Uncharacterized conser 80.0 30 0.00065 33.9 11.3 49 363-411 115-163 (418)
339 PF00637 Clathrin: Region in C 79.6 0.61 1.3E-05 40.8 0.1 54 564-617 13-66 (143)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 79.4 19 0.00042 28.4 8.0 44 612-655 26-69 (103)
341 KOG2471 TPR repeat-containing 78.8 50 0.0011 34.6 13.0 40 290-329 29-68 (696)
342 PF02284 COX5A: Cytochrome c o 78.5 16 0.00035 29.1 7.5 47 611-657 28-74 (108)
343 KOG2066 Vacuolar assembly/sort 77.8 1.2E+02 0.0027 33.8 30.1 24 247-270 396-419 (846)
344 KOG1586 Protein required for f 77.7 63 0.0014 30.4 20.3 23 603-625 164-186 (288)
345 PF02284 COX5A: Cytochrome c o 77.2 30 0.00066 27.7 8.6 47 576-622 28-74 (108)
346 COG3947 Response regulator con 76.6 79 0.0017 30.9 17.7 69 630-699 281-354 (361)
347 PF13174 TPR_6: Tetratricopept 76.3 3 6.6E-05 25.0 2.6 23 668-690 5-27 (33)
348 COG4455 ImpE Protein of avirul 76.0 15 0.00032 34.0 7.6 77 595-672 3-81 (273)
349 KOG0890 Protein kinase of the 76.0 2.4E+02 0.0053 36.3 35.7 324 129-482 1388-1731(2382)
350 TIGR02508 type_III_yscG type I 76.0 27 0.00059 27.8 8.0 78 224-308 21-98 (115)
351 COG1747 Uncharacterized N-term 75.7 1.1E+02 0.0025 32.3 25.4 164 452-622 65-234 (711)
352 PF13174 TPR_6: Tetratricopept 74.8 4.7 0.0001 24.1 3.2 31 126-156 2-32 (33)
353 PF07721 TPR_4: Tetratricopept 74.3 5 0.00011 22.8 2.9 21 667-687 5-25 (26)
354 COG4455 ImpE Protein of avirul 74.1 26 0.00055 32.5 8.6 55 565-620 8-62 (273)
355 smart00028 TPR Tetratricopepti 73.7 6.4 0.00014 22.7 3.7 26 665-690 3-28 (34)
356 PF10579 Rapsyn_N: Rapsyn N-te 73.4 10 0.00022 28.6 5.0 47 640-686 18-66 (80)
357 PF14853 Fis1_TPR_C: Fis1 C-te 73.0 9.3 0.0002 26.5 4.5 35 668-704 6-40 (53)
358 TIGR03504 FimV_Cterm FimV C-te 72.9 8.1 0.00018 25.5 4.0 22 669-690 5-26 (44)
359 KOG4642 Chaperone-dependent E3 72.8 58 0.0012 30.8 10.6 21 249-269 84-104 (284)
360 PF08424 NRDE-2: NRDE-2, neces 72.6 1.1E+02 0.0025 30.9 18.7 118 540-659 48-185 (321)
361 PF07721 TPR_4: Tetratricopept 72.6 4.7 0.0001 22.9 2.6 21 177-197 5-25 (26)
362 cd00923 Cyt_c_Oxidase_Va Cytoc 72.5 46 0.001 26.4 9.1 48 574-621 23-70 (103)
363 PF09477 Type_III_YscG: Bacter 71.8 52 0.0011 26.6 8.9 79 223-308 21-99 (116)
364 TIGR03504 FimV_Cterm FimV C-te 71.4 6.8 0.00015 25.9 3.3 25 179-203 5-29 (44)
365 PRK11619 lytic murein transgly 71.3 1.8E+02 0.004 32.7 39.9 252 248-516 104-374 (644)
366 PF09986 DUF2225: Uncharacteri 71.2 69 0.0015 30.1 11.4 68 630-697 120-199 (214)
367 KOG4507 Uncharacterized conser 71.2 18 0.00039 38.5 7.9 86 571-657 620-705 (886)
368 COG0790 FOG: TPR repeat, SEL1 70.9 1.2E+02 0.0025 30.2 25.1 117 573-696 128-270 (292)
369 KOG0403 Neoplastic transformat 70.8 1.4E+02 0.003 31.1 18.2 19 354-372 351-369 (645)
370 PHA02875 ankyrin repeat protei 70.5 1.5E+02 0.0032 31.3 16.5 25 424-452 205-229 (413)
371 COG0790 FOG: TPR repeat, SEL1 70.1 1.2E+02 0.0026 30.1 24.1 151 185-344 53-222 (292)
372 KOG2471 TPR repeat-containing 70.1 1.5E+02 0.0033 31.3 17.7 107 567-675 249-381 (696)
373 PRK07003 DNA polymerase III su 69.9 2.1E+02 0.0045 32.8 17.1 99 104-206 180-278 (830)
374 KOG3364 Membrane protein invol 69.8 70 0.0015 27.3 9.9 70 626-698 30-104 (149)
375 TIGR02508 type_III_yscG type I 69.3 53 0.0011 26.2 8.2 51 602-658 48-98 (115)
376 KOG2422 Uncharacterized conser 68.9 1.7E+02 0.0038 31.6 17.4 164 139-306 253-447 (665)
377 PF00637 Clathrin: Region in C 68.7 2.6 5.6E-05 36.8 1.3 52 181-232 15-66 (143)
378 PF07163 Pex26: Pex26 protein; 67.9 73 0.0016 30.9 10.5 85 565-651 90-181 (309)
379 KOG2062 26S proteasome regulat 66.7 2.2E+02 0.0048 31.9 37.4 309 393-713 367-697 (929)
380 KOG4507 Uncharacterized conser 66.6 27 0.00059 37.2 8.1 105 533-639 617-721 (886)
381 COG1747 Uncharacterized N-term 66.0 1.9E+02 0.0041 30.8 25.0 178 347-532 65-248 (711)
382 PF04910 Tcf25: Transcriptiona 65.2 1.7E+02 0.0038 30.1 19.6 118 122-271 38-167 (360)
383 smart00028 TPR Tetratricopepti 64.6 9 0.00019 22.0 2.9 31 125-155 2-32 (34)
384 KOG0376 Serine-threonine phosp 63.3 12 0.00026 38.9 4.9 102 134-253 14-115 (476)
385 PF07163 Pex26: Pex26 protein; 62.9 1.1E+02 0.0023 29.9 10.6 85 495-581 90-181 (309)
386 KOG1586 Protein required for f 62.6 1.4E+02 0.0031 28.2 21.4 16 326-341 167-182 (288)
387 COG5159 RPN6 26S proteasome re 62.1 1.6E+02 0.0035 28.7 20.6 54 248-301 8-68 (421)
388 COG5159 RPN6 26S proteasome re 62.0 1.6E+02 0.0035 28.7 16.7 95 562-656 129-234 (421)
389 KOG2063 Vacuolar assembly/sort 61.5 3.1E+02 0.0068 31.9 25.0 65 127-201 310-374 (877)
390 cd08819 CARD_MDA5_2 Caspase ac 61.3 61 0.0013 25.2 7.1 38 395-437 48-85 (88)
391 KOG4642 Chaperone-dependent E3 60.7 1.6E+02 0.0034 28.1 11.0 115 222-340 24-144 (284)
392 PF04190 DUF410: Protein of un 60.5 1.7E+02 0.0037 28.5 18.9 26 346-371 88-113 (260)
393 PF10579 Rapsyn_N: Rapsyn N-te 60.2 29 0.00062 26.3 5.1 47 605-651 18-66 (80)
394 KOG2908 26S proteasome regulat 58.7 1.3E+02 0.0028 30.1 10.6 75 565-639 82-167 (380)
395 PHA02875 ankyrin repeat protei 58.2 2.5E+02 0.0054 29.6 15.5 203 195-418 17-230 (413)
396 COG2812 DnaX DNA polymerase II 57.6 1.2E+02 0.0026 32.8 11.3 97 103-207 179-279 (515)
397 PF09986 DUF2225: Uncharacteri 57.3 90 0.0019 29.4 9.4 90 638-727 87-194 (214)
398 PF08311 Mad3_BUB1_I: Mad3/BUB 56.7 1E+02 0.0022 26.0 8.8 44 646-689 81-125 (126)
399 PF11846 DUF3366: Domain of un 55.9 28 0.00061 32.1 5.8 56 100-155 120-175 (193)
400 PF09670 Cas_Cas02710: CRISPR- 55.7 2E+02 0.0043 30.0 12.5 56 531-587 139-198 (379)
401 COG4259 Uncharacterized protei 55.6 73 0.0016 25.3 6.7 55 648-704 57-111 (121)
402 KOG2034 Vacuolar sorting prote 55.4 3.8E+02 0.0082 30.9 28.9 169 181-374 366-556 (911)
403 PF04190 DUF410: Protein of un 55.1 2.1E+02 0.0046 27.9 19.9 25 557-581 89-113 (260)
404 COG5187 RPN7 26S proteasome re 54.4 2.2E+02 0.0048 27.9 14.1 24 560-583 117-140 (412)
405 PF14561 TPR_20: Tetratricopep 54.3 1E+02 0.0022 24.2 7.8 29 662-690 21-49 (90)
406 PF10366 Vps39_1: Vacuolar sor 54.2 70 0.0015 26.2 7.1 27 175-201 41-67 (108)
407 PRK10941 hypothetical protein; 54.1 1.1E+02 0.0023 30.0 9.6 61 174-235 182-242 (269)
408 KOG4077 Cytochrome c oxidase, 54.0 97 0.0021 26.0 7.6 43 614-656 70-112 (149)
409 PF14561 TPR_20: Tetratricopep 53.6 1.1E+02 0.0023 24.1 8.9 33 172-204 21-53 (90)
410 PRK10941 hypothetical protein; 53.2 1.7E+02 0.0037 28.7 10.8 58 632-690 185-242 (269)
411 PF13929 mRNA_stabil: mRNA sta 53.1 2.4E+02 0.0051 27.8 17.3 55 416-470 200-255 (292)
412 PF00244 14-3-3: 14-3-3 protei 53.1 1.7E+02 0.0036 28.1 10.6 48 644-691 142-197 (236)
413 KOG1308 Hsp70-interacting prot 52.1 10 0.00022 37.5 2.2 119 568-691 124-243 (377)
414 PF12862 Apc5: Anaphase-promot 50.9 95 0.0021 24.5 7.4 53 639-691 9-69 (94)
415 KOG0376 Serine-threonine phosp 50.9 34 0.00074 35.7 5.7 105 180-289 11-116 (476)
416 PF14689 SPOB_a: Sensor_kinase 50.8 42 0.0009 24.2 4.7 21 599-619 29-49 (62)
417 KOG0687 26S proteasome regulat 50.7 2.7E+02 0.0059 27.8 15.7 93 423-515 109-208 (393)
418 PF14689 SPOB_a: Sensor_kinase 50.5 46 0.00099 24.0 4.9 26 665-690 25-50 (62)
419 PRK13342 recombination factor 49.7 3.4E+02 0.0074 28.7 19.4 84 606-689 243-331 (413)
420 KOG0687 26S proteasome regulat 49.5 2.8E+02 0.0062 27.7 14.1 98 453-552 104-210 (393)
421 PF00244 14-3-3: 14-3-3 protei 48.9 2.3E+02 0.005 27.1 10.9 40 424-463 7-46 (236)
422 PF09670 Cas_Cas02710: CRISPR- 47.2 2.1E+02 0.0045 29.8 11.0 16 361-376 254-269 (379)
423 KOG0686 COP9 signalosome, subu 47.1 3.5E+02 0.0076 28.0 15.0 96 172-269 149-255 (466)
424 PF11663 Toxin_YhaV: Toxin wit 46.7 26 0.00056 29.7 3.4 31 219-251 106-136 (140)
425 cd08819 CARD_MDA5_2 Caspase ac 45.9 1.4E+02 0.0031 23.2 7.1 62 613-680 22-83 (88)
426 PF11663 Toxin_YhaV: Toxin wit 45.8 19 0.00041 30.4 2.5 23 676-698 108-130 (140)
427 KOG0545 Aryl-hydrocarbon recep 45.2 2.8E+02 0.0062 26.5 10.8 106 125-236 179-292 (329)
428 PRK13800 putative oxidoreducta 44.3 6.2E+02 0.013 30.1 30.5 246 416-690 633-879 (897)
429 KOG1308 Hsp70-interacting prot 44.2 14 0.00031 36.6 1.9 88 186-276 127-215 (377)
430 PF09477 Type_III_YscG: Bacter 43.9 1.8E+02 0.0039 23.7 9.2 19 639-657 80-98 (116)
431 PF04910 Tcf25: Transcriptiona 42.4 4.1E+02 0.0088 27.5 20.4 122 172-306 39-167 (360)
432 COG2178 Predicted RNA-binding 41.0 2.9E+02 0.0063 25.4 10.0 16 325-340 133-148 (204)
433 PF11848 DUF3368: Domain of un 41.0 1E+02 0.0023 20.7 5.2 29 640-668 14-42 (48)
434 KOG0551 Hsp90 co-chaperone CNS 40.8 1.9E+02 0.0042 29.0 8.7 96 593-690 81-180 (390)
435 KOG1464 COP9 signalosome, subu 40.7 3.5E+02 0.0075 26.2 24.8 233 388-633 70-342 (440)
436 KOG3364 Membrane protein invol 40.3 2.4E+02 0.0052 24.2 9.1 67 556-622 30-100 (149)
437 PF11846 DUF3366: Domain of un 40.1 1.4E+02 0.0029 27.5 7.7 36 659-696 140-175 (193)
438 cd00280 TRFH Telomeric Repeat 40.0 1.7E+02 0.0037 26.5 7.6 48 609-656 85-139 (200)
439 KOG0551 Hsp90 co-chaperone CNS 39.6 2.1E+02 0.0046 28.7 8.8 98 125-234 82-179 (390)
440 PF12862 Apc5: Anaphase-promot 39.6 1.7E+02 0.0037 23.1 7.2 20 602-621 50-69 (94)
441 PF14853 Fis1_TPR_C: Fis1 C-te 39.4 1.3E+02 0.0028 20.9 6.1 29 634-664 7-35 (53)
442 KOG0292 Vesicle coat complex C 39.2 2.6E+02 0.0056 32.0 10.3 176 186-411 606-781 (1202)
443 COG4976 Predicted methyltransf 38.3 1E+02 0.0022 29.0 6.2 55 603-658 5-59 (287)
444 PRK09857 putative transposase; 38.2 2.2E+02 0.0048 28.4 9.2 66 632-698 210-275 (292)
445 KOG0686 COP9 signalosome, subu 38.0 3.9E+02 0.0085 27.7 10.6 64 559-622 151-216 (466)
446 PRK14962 DNA polymerase III su 37.7 5.5E+02 0.012 27.7 15.2 96 108-207 182-277 (472)
447 PRK11619 lytic murein transgly 37.4 6.6E+02 0.014 28.5 43.2 312 218-551 43-374 (644)
448 KOG0292 Vesicle coat complex C 37.2 7.1E+02 0.015 28.8 23.1 100 604-703 1002-1124(1202)
449 PF13929 mRNA_stabil: mRNA sta 36.8 4.3E+02 0.0093 26.1 18.2 114 329-442 144-262 (292)
450 cd00280 TRFH Telomeric Repeat 36.8 2.4E+02 0.0051 25.7 7.9 64 573-639 84-154 (200)
451 KOG4567 GTPase-activating prot 36.3 3.8E+02 0.0083 26.6 9.8 43 614-656 264-306 (370)
452 KOG4077 Cytochrome c oxidase, 36.0 2.6E+02 0.0057 23.6 7.5 45 578-622 69-113 (149)
453 KOG3807 Predicted membrane pro 35.7 4.6E+02 0.01 26.2 14.2 19 253-271 285-303 (556)
454 PRK12323 DNA polymerase III su 35.7 6.9E+02 0.015 28.2 15.0 97 105-205 186-282 (700)
455 KOG4521 Nuclear pore complex, 35.5 8.6E+02 0.019 29.2 14.3 123 133-261 929-1072(1480)
456 KOG2297 Predicted translation 34.7 4.7E+02 0.01 26.0 21.0 20 523-542 321-340 (412)
457 PRK12798 chemotaxis protein; R 34.3 5.6E+02 0.012 26.8 21.6 82 466-549 125-211 (421)
458 cd02680 MIT_calpain7_2 MIT: do 34.3 84 0.0018 23.7 4.2 17 675-691 18-34 (75)
459 PF06855 DUF1250: Protein of u 33.9 56 0.0012 21.8 2.9 43 110-152 1-43 (46)
460 PF11848 DUF3368: Domain of un 33.9 1.4E+02 0.0031 20.0 5.0 23 186-208 15-37 (48)
461 PRK13800 putative oxidoreducta 33.7 8.8E+02 0.019 28.9 28.8 247 381-656 633-880 (897)
462 PF10366 Vps39_1: Vacuolar sor 33.4 2.7E+02 0.0058 22.8 8.0 26 386-411 42-67 (108)
463 PRK09857 putative transposase; 33.2 3.6E+02 0.0079 26.8 9.8 64 248-312 211-274 (292)
464 PRK10564 maltose regulon perip 32.2 91 0.002 30.7 5.2 32 245-276 259-290 (303)
465 PRK10564 maltose regulon perip 32.0 89 0.0019 30.8 5.1 30 631-660 260-289 (303)
466 PF03745 DUF309: Domain of unk 31.6 1.9E+02 0.0042 20.8 5.6 17 570-586 11-27 (62)
467 KOG0545 Aryl-hydrocarbon recep 31.4 4.8E+02 0.01 25.1 10.5 62 633-697 235-296 (329)
468 KOG1839 Uncharacterized protei 31.2 6.6E+02 0.014 30.5 12.4 151 499-649 943-1120(1236)
469 COG0735 Fur Fe2+/Zn2+ uptake r 31.1 2.7E+02 0.0059 24.2 7.6 25 600-624 27-51 (145)
470 PRK13342 recombination factor 30.9 6.6E+02 0.014 26.5 19.4 21 397-417 244-264 (413)
471 KOG2168 Cullins [Cell cycle co 30.5 8.9E+02 0.019 27.9 26.3 23 249-271 331-353 (835)
472 smart00386 HAT HAT (Half-A-TPR 30.4 1.1E+02 0.0025 17.5 4.0 13 644-656 3-15 (33)
473 COG4259 Uncharacterized protei 30.3 2.9E+02 0.0062 22.2 6.8 54 612-667 56-109 (121)
474 PHA03100 ankyrin repeat protei 30.1 7.2E+02 0.016 26.7 12.7 13 195-207 50-62 (480)
475 KOG0991 Replication factor C, 30.0 4.9E+02 0.011 24.8 13.3 36 626-662 237-272 (333)
476 PRK13341 recombination factor 29.8 9.1E+02 0.02 27.8 18.0 165 503-682 169-352 (725)
477 PF15297 CKAP2_C: Cytoskeleton 29.5 5.1E+02 0.011 26.3 9.8 51 645-697 120-174 (353)
478 PRK14956 DNA polymerase III su 29.2 6.4E+02 0.014 27.2 11.2 45 106-152 184-228 (484)
479 KOG0403 Neoplastic transformat 28.8 7.1E+02 0.015 26.2 27.1 74 597-675 513-586 (645)
480 PF11817 Foie-gras_1: Foie gra 28.3 2.4E+02 0.0052 27.2 7.6 19 601-619 186-204 (247)
481 PF09454 Vps23_core: Vps23 cor 28.0 2.1E+02 0.0046 20.8 5.3 33 347-379 7-39 (65)
482 COG5187 RPN7 26S proteasome re 27.7 6E+02 0.013 25.0 18.1 97 523-621 115-220 (412)
483 KOG1839 Uncharacterized protei 27.6 7E+02 0.015 30.3 11.9 157 532-688 941-1124(1236)
484 PF10475 DUF2450: Protein of u 26.7 6.4E+02 0.014 25.0 13.3 53 213-271 103-155 (291)
485 PRK08691 DNA polymerase III su 26.4 9.2E+02 0.02 27.5 12.2 94 608-704 179-286 (709)
486 COG2178 Predicted RNA-binding 26.4 5.2E+02 0.011 23.8 10.2 15 360-374 41-55 (204)
487 PF10516 SHNi-TPR: SHNi-TPR; 26.2 1.4E+02 0.0031 19.0 3.6 27 175-201 3-29 (38)
488 PF08311 Mad3_BUB1_I: Mad3/BUB 26.1 4E+02 0.0087 22.5 10.2 43 191-233 81-124 (126)
489 KOG2659 LisH motif-containing 25.9 5.7E+02 0.012 24.2 9.7 20 566-585 72-91 (228)
490 PF11817 Foie-gras_1: Foie gra 25.9 3.3E+02 0.0071 26.3 8.0 26 349-374 219-244 (247)
491 PF10255 Paf67: RNA polymerase 25.8 2E+02 0.0043 30.1 6.6 111 123-235 74-191 (404)
492 PF15297 CKAP2_C: Cytoskeleton 25.4 7.2E+02 0.016 25.3 10.0 44 595-638 142-185 (353)
493 COG5108 RPO41 Mitochondrial DN 25.4 3.7E+02 0.0081 29.7 8.5 91 528-621 33-131 (1117)
494 PF09454 Vps23_core: Vps23 cor 25.1 1.6E+02 0.0036 21.4 4.3 25 179-203 14-38 (65)
495 PRK14951 DNA polymerase III su 25.0 1E+03 0.022 26.8 12.4 97 105-205 186-282 (618)
496 COG4976 Predicted methyltransf 24.9 2.6E+02 0.0057 26.4 6.5 55 567-622 4-58 (287)
497 PF13762 MNE1: Mitochondrial s 24.9 4.7E+02 0.01 22.8 10.3 97 194-290 23-127 (145)
498 PRK12798 chemotaxis protein; R 24.9 8.2E+02 0.018 25.6 21.7 195 500-698 124-330 (421)
499 smart00777 Mad3_BUB1_I Mad3/BU 24.8 4.3E+02 0.0093 22.4 9.7 43 645-687 80-123 (125)
500 COG0735 Fur Fe2+/Zn2+ uptake r 24.5 3.6E+02 0.0078 23.5 7.2 32 354-385 26-57 (145)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=7.8e-76 Score=675.08 Aligned_cols=592 Identities=20% Similarity=0.292 Sum_probs=471.8
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchh---hhHHHhhcCC-----------
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHG---ILDVLIGGGL----------- 167 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~---~~~~l~~~~~----------- 167 (729)
+++..|+.+|+.+.. .|++|+..+|..++..+.+.+.++.|..++..+++.++.. +.+.++..+.
T Consensus 65 g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~ 143 (857)
T PLN03077 65 GQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYV 143 (857)
T ss_pred CCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHH
Confidence 345555555555542 3445555555555555555555555555555444433210 0111111000
Q ss_pred ---CCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh
Q 004814 168 ---SSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV 244 (729)
Q Consensus 168 ---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~ 244 (729)
-...+...|+.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.++.+.+++..+.+++..|.+.|+.||..
T Consensus 144 f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc
Confidence 00123457888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
+||.|+.+|++.|++++|.++|++|.+ ||.++||++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 888888888888888888888888864 5788888888888888888888888888888888888888888888888
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 404 (729)
+.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~ 375 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALE 375 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHH
Confidence 8888888888888888888888888888888888888888888888888865 788888888888888888888888
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 405 LFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL 484 (729)
Q Consensus 405 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 484 (729)
+|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+
T Consensus 376 lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888764
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004814 485 QPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSI 564 (729)
Q Consensus 485 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 564 (729)
+|..+|+.++.+|++.|+.++|+.+|++|.. +++||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..+++++
T Consensus 453 -~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 -KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred -CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 4777888888888888888888888888875 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI 644 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 644 (729)
+++|++.|++++|.++|+.+ .+|..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++
T Consensus 531 i~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v 605 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChH
Confidence 88888888888888888776 4788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc
Q 004814 645 DQAYGLFIDME-EEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH 716 (729)
Q Consensus 645 ~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~ 716 (729)
++|.++|++|. +.|+.|+..+|+.++++|+++|++++|.+++++| +++||..+|.++ +..+...|+.+
T Consensus 606 ~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aL-l~ac~~~~~~e 674 (857)
T PLN03077 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGAL-LNACRIHRHVE 674 (857)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHH-HHHHHHcCChH
Confidence 88888888888 5788888888888888888888888888888888 578888888888 55566666665
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.9e-75 Score=668.48 Aligned_cols=583 Identities=21% Similarity=0.286 Sum_probs=549.9
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHH
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLL 181 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 181 (729)
++.+.|+.+|+.+. ++|..+|+.++.+|++.|++++|..+|++|...+.. ++..+|..+++
T Consensus 135 g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~--------------Pd~~t~~~ll~ 195 (857)
T PLN03077 135 GELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR--------------PDVYTFPCVLR 195 (857)
T ss_pred CChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------------CChhHHHHHHH
Confidence 56777777777764 257778888888888888888888888877654322 36788999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (729)
++++.++++.+.+++..+.+.|+.||+.++|.++.+|++.|++++|.++|++|. .||..+||+||.+|++.|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHH
Confidence 999999999999999999999999999999999999999999999999999997 4789999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|..
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~ 351 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhH
Q 004814 342 RGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTY 421 (729)
Q Consensus 342 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~ 421 (729)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|
T Consensus 352 ----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~ 427 (857)
T PLN03077 352 ----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427 (857)
T ss_pred ----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004814 422 NTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKL 501 (729)
Q Consensus 422 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 501 (729)
+.|+++|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|+++|++|.. ++.||..+|..++.+|++.
T Consensus 428 n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 428 NALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhh
Confidence 999999999999999999999996 46888999999999999999999999999986 5899999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 502 GDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLF 581 (729)
Q Consensus 502 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (729)
|+.+.+.+++..+.+.|+.+|..++++++++|++.|++++|.++|+.+ .||..+|++++.+|++.|+.++|.++|
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999987 579999999999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 582 NNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ-VKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~ 654 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---IT 654 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CC
Confidence 999999999999999999999999999999999999999 67999999999999999999999999999999984 78
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHHHHHhhc
Q 004814 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEYLESLTL 726 (729)
Q Consensus 661 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l~~ 726 (729)
||..+|.+|+.+|...|+.+.|....++++ ++.|+...++.++...|.+.|+++ |.++.+.|..
T Consensus 655 pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~--~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 655 PDPAVWGALLNACRIHRHVELGELAAQHIF--ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHH--hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999 789988888888899999999999 7777777653
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.9e-71 Score=618.88 Aligned_cols=523 Identities=20% Similarity=0.310 Sum_probs=499.0
Q ss_pred chHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 171 VSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL-PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 171 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
.+...|..+...|++.|++++|+++|++|.+.|+. ++...++.++..|.+.|..++|..+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 45667888889999999999999999999999864 5777788899999999999999999999974 899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
+.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 004814 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR--KNVIPDIISYNTLLYGYCRSGNIGEAFLLFD 407 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 407 (729)
++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 5788999999999999999999999999999
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 408 ELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD 487 (729)
Q Consensus 408 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 487 (729)
+|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHA 567 (729)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (729)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHCCC
Q 004814 568 SLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA----R-------------------GRLELAFMYFSEMQVKGI 624 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~g~ 624 (729)
|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|.+.|+
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi 843 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT 843 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999876432 1 124689999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 625 RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
.||..||+.++.++++.+..+.+..++++|...+..|+..+|+++++++++. .++|..++++|...|+.|+..
T Consensus 844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 9999999999999999999999999999998888899999999999998432 478999999999999999875
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.9e-70 Score=610.82 Aligned_cols=538 Identities=18% Similarity=0.269 Sum_probs=503.2
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH
Q 004814 105 RIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT 184 (729)
Q Consensus 105 ~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 184 (729)
..++...++.... .++...|..++..|.+.|++++|..+|++|...+.. .++...+..++..|.
T Consensus 354 ~~~~~~~~~~~~~---~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv-------------~~~~v~~~~li~~~~ 417 (1060)
T PLN03218 354 ENSLAAYNGGVSG---KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLL-------------DMDKIYHAKFFKACK 417 (1060)
T ss_pred hhhHHHhccccCC---CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCC-------------CchHHHHHHHHHHHH
Confidence 4556666666432 467888899999999999999999999999876532 124556778899999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004814 185 KKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE 264 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 264 (729)
+.|.+++|+.+|+.|.. ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.+
T Consensus 418 ~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~ 493 (1060)
T PLN03218 418 KQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493 (1060)
T ss_pred HCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence 99999999999999875 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHH--C
Q 004814 265 LLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVT--R 342 (729)
Q Consensus 265 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~ 342 (729)
+|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .
T Consensus 494 vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~ 573 (1060)
T PLN03218 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
|+.||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 574 gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyn 653 (1060)
T PLN03218 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFS 653 (1060)
T ss_pred CCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 004814 423 TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLG 502 (729)
Q Consensus 423 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 502 (729)
.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G 733 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN 733 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------
Q 004814 503 DTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE----M------- 571 (729)
Q Consensus 503 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~------- 571 (729)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ .
T Consensus 734 ~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v 813 (1060)
T PLN03218 734 QLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPV 813 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999876432 1
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 572 ------------GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLC 639 (729)
Q Consensus 572 ------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 639 (729)
+..++|..+|++|.+.|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|++++++++
T Consensus 814 ~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~ 893 (1060)
T PLN03218 814 VSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG 893 (1060)
T ss_pred hhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc
Confidence 22467999999999999999999999999999899999999999999998888999999999999985
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH
Q 004814 640 RLRRIDQAYGLFIDMEEEGILPNKY 664 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (729)
+. .++|..++++|.+.|+.|+..
T Consensus 894 ~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 894 EY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred cC--hHHHHHHHHHHHHcCCCCCcc
Confidence 43 468999999999999999875
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7e-63 Score=554.34 Aligned_cols=508 Identities=21% Similarity=0.260 Sum_probs=470.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNG-LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
.|+.++..|.+.|++++|+++|+.|...+ +.||..+|+.++.++.+.++++.|.+++..|.+.|+.||..+||.|+++|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 56778999999999999999999999865 67999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHH
Q 004814 254 CKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEAL 333 (729)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 333 (729)
++.|++++|.++|++|.+ ||.++||+++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999964 7999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 004814 334 NLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN 413 (729)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 413 (729)
+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|.. +|..+||.+|.+|++.|+.++|+++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999976 799999999999999999999999999999999
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004814 414 LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTT 493 (729)
Q Consensus 414 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 493 (729)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++|++.|++++|.++|++|.+ ||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999964 69999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 004814 494 QIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVG-DGFIPDHITYTSIIHASLEMG 572 (729)
Q Consensus 494 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g 572 (729)
+|.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999986 589999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP-NVITYNALINGLCRLRRIDQAYGLF 651 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 651 (729)
++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++.+. .| +..+|..++.+|++.|++++|.+++
T Consensus 477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~ 551 (697)
T PLN03081 477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVV 551 (697)
T ss_pred CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHH
Confidence 999999998765 46899999999999999999999999999999764 45 4679999999999999999999999
Q ss_pred HHHHHcCCCCCHH-HHHHHH-------HHH----HhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 652 IDMEEEGILPNKY-TYTILI-------NEN----CNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 652 ~~m~~~g~~p~~~-~~~~l~-------~~~----~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
++|.+.|+...+. +|..+. ..- ....-++...++.++|.+.|..||..
T Consensus 552 ~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 9999999864432 332111 000 00112455667888888899999853
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.9e-62 Score=549.39 Aligned_cols=476 Identities=21% Similarity=0.323 Sum_probs=455.3
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG-IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
..+..+|+.++..|.+.|++++|.++|+.|...+ +.||..+|+.++.++++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3467789999999999999999999999998764 689999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 284 LITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGR 363 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 363 (729)
++.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999996 479999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 364 VSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKEN 443 (729)
Q Consensus 364 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 443 (729)
.+.+.+++..+.+.|..||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999965 5899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 444 MINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL 523 (729)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 523 (729)
|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+ ||.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999864 689
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHH
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLR-KGLSPTLVTYTVLIHA 602 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 602 (729)
.+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
|++.|++++|.+++++| ++.|+..+|++++.+|+..|+++.|..+++++.+.+ +.+..+|..+++.|++.|+|++|
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHH
Confidence 99999999999999876 578999999999999999999999999999997643 33567999999999999999999
Q ss_pred HHHHHHHHHCCCCC
Q 004814 683 LRLYKEMLDREIEP 696 (729)
Q Consensus 683 ~~~~~~m~~~~~~p 696 (729)
.+++++|.+.|+++
T Consensus 548 ~~v~~~m~~~g~~k 561 (697)
T PLN03081 548 AKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHcCCcc
Confidence 99999999998763
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-37 Score=367.74 Aligned_cols=605 Identities=14% Similarity=0.045 Sum_probs=493.5
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhh--HHH----hhc---------
Q 004814 101 REKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGIL--DVL----IGG--------- 165 (729)
Q Consensus 101 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~l----~~~--------- 165 (729)
.++++.|+..|+.+.+.. +.+...+..+..++...|++++|...+++++...|.... ..+ ...
T Consensus 274 ~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 351 (899)
T TIGR02917 274 KKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIAT 351 (899)
T ss_pred hcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 456666666666655432 122334444555566666666666666666655443200 000 000
Q ss_pred ----CCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC
Q 004814 166 ----GLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP 241 (729)
Q Consensus 166 ----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~ 241 (729)
....+.+..++..++..|.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.+.|+.+.+.+ +.
T Consensus 352 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~ 429 (899)
T TIGR02917 352 LSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLD-PE 429 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-Cc
Confidence 0011224667888888999999999999999999887644 56677788888889999999999999888765 34
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 004814 242 SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC 321 (729)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 321 (729)
+......++..+.+.|++++|.++++++... .+++..++..+...+...|++++|.+.|+++.+.. +.+...+..++.
T Consensus 430 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 507 (899)
T TIGR02917 430 LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLAR 507 (899)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHH
Confidence 4556677888899999999999999998875 45577889999999999999999999999998865 346677888899
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 004814 322 GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE 401 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 401 (729)
.+...|++++|.+.++++...++. +..++..+...+.+.|+.++|...++++...++ .+...+..++..+...|++++
T Consensus 508 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 508 IDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999887544 778889999999999999999999999988765 567788889999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 402 AFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 402 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
|..+++++.+.. +.+..+|..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999998754 4577889999999999999999999999998875 55778889999999999999999999999998
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 482 KGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561 (729)
Q Consensus 482 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 561 (729)
... .+..++..+...+...|++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.++++.... |+..++
T Consensus 664 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 739 (899)
T TIGR02917 664 LKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA 739 (899)
T ss_pred cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence 643 357788889999999999999999999998875 6778888899999999999999999999999875 445777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL 641 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 641 (729)
..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...|++++|...|+++.+.. +.+...++.++..+...
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 817 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL 817 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 888999999999999999999999875 6778899999999999999999999999999874 45788899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHH
Q 004814 642 RRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEY 720 (729)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~ 720 (729)
|+ ++|+.+++++.+.. +.+...+..++.++...|++++|.++++++++.+.. +..++..+ +..+.+.|+.+ |.+.
T Consensus 818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l-~~~~~~~g~~~~A~~~ 893 (899)
T TIGR02917 818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL-ALALLATGRKAEARKE 893 (899)
T ss_pred Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH-HHHHHHcCCHHHHHHH
Confidence 99 88999999999863 456678889999999999999999999999954332 45555555 99999999998 9999
Q ss_pred HHHhh
Q 004814 721 LESLT 725 (729)
Q Consensus 721 l~~l~ 725 (729)
++++.
T Consensus 894 ~~~~~ 898 (899)
T TIGR02917 894 LDKLL 898 (899)
T ss_pred HHHHh
Confidence 99875
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-36 Score=356.64 Aligned_cols=606 Identities=15% Similarity=0.060 Sum_probs=492.9
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHH------hhcC--------
Q 004814 101 REKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVL------IGGG-------- 166 (729)
Q Consensus 101 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l------~~~~-------- 166 (729)
.++.+.|...|+.+.+.. +.+...+.....++...|++++|...++++++.+|....... ...+
T Consensus 240 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 317 (899)
T TIGR02917 240 AGEFEEAEKHADALLKKA--PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQY 317 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHH
Confidence 578999999999987644 345566666777788899999999999999988775311000 0000
Q ss_pred -----CCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC
Q 004814 167 -----LSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP 241 (729)
Q Consensus 167 -----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~ 241 (729)
...+.+...+..++..+.+.|++++|...++++.+..+. +...+..+...+.+.|++++|.++|+++.+.. +.
T Consensus 318 ~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 395 (899)
T TIGR02917 318 LNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPD-DPAALSLLGEAYLALGDFEKAAEYLAKATELD-PE 395 (899)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CC
Confidence 001224556677788888888888888888888876643 66777888888888888888888888887764 45
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 004814 242 SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC 321 (729)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 321 (729)
+...+..+...+...|++++|.+.|+++.+... ........++..+.+.|++++|.++++++.+.. +.+..++..+..
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 473 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGA 473 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHH
Confidence 667788888888888888888888888877632 234455667788888899999999998888754 457778899999
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH
Q 004814 322 GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE 401 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 401 (729)
.+...|++++|.+.|+++.+..+. +...+..++..+...|++++|.+.++++...++ .+..++..+...+.+.|+.++
T Consensus 474 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 474 IYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998876443 566777888899999999999999999988765 577888889999999999999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 402 AFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 402 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
|...++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...|..++..+.+.|++++|...++++.+
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999987764 3466777888899999999999999999998764 56788899999999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 482 KGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561 (729)
Q Consensus 482 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 561 (729)
... .+...+..+...+.+.|++++|...++.+.+.. +.+..++..++..+...|++++|.++++.+.+.. +.+...+
T Consensus 630 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 630 LQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred hCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 643 356778888889999999999999999998864 6678889999999999999999999999998876 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL 641 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 641 (729)
..+...+...|++++|.+.++.+...+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|...
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~ 783 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQ 783 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 888899999999999999999998874 555778888999999999999999999998864 44778889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHH
Q 004814 642 RRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEY 720 (729)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~ 720 (729)
|+.++|...|+++.+.+ +++..++..++..+...|+ ++|+..+++++ ...|+.......++..+...|+.+ |.+.
T Consensus 784 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 784 KDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL--KLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH--hhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999875 6678889999999999999 88999999998 556665554445588888889998 9888
Q ss_pred HHHhhc
Q 004814 721 LESLTL 726 (729)
Q Consensus 721 l~~l~~ 726 (729)
+++...
T Consensus 860 ~~~a~~ 865 (899)
T TIGR02917 860 LRKAVN 865 (899)
T ss_pred HHHHHh
Confidence 877653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.7e-28 Score=283.51 Aligned_cols=608 Identities=11% Similarity=-0.002 Sum_probs=417.4
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHH-HhhcCCCCcchHHHHHHH
Q 004814 101 REKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDV-LIGGGLSSCVSIKILDLL 179 (729)
Q Consensus 101 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l 179 (729)
+++++.|...+..+.... +.|+..+..++.++.+.|+.++|...++++.+..|....-. +.........+.+....+
T Consensus 41 ~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 41 THREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHH
Confidence 578899999998887644 45889999999999999999999999999999988741110 000000011123334566
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
++.+.+.|++++|++.|+++.+.++.................|+.++|++.++++.+.. +.+...+..+...+...|+.
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~ 197 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRR 197 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCH
Confidence 77899999999999999999986543221111122222334699999999999999875 56778889999999999999
Q ss_pred HHHHHHHHHHHhCCC------------------CCCH-HHHH----------------------------------HHHH
Q 004814 260 QEALELLWEMQGRGC------------------SPNG-VTYN----------------------------------VLIT 286 (729)
Q Consensus 260 ~~A~~~~~~m~~~~~------------------~p~~-~~~~----------------------------------~li~ 286 (729)
++|++.++++..... .++. ..+. ....
T Consensus 198 ~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~ 277 (1157)
T PRK11447 198 DEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGL 277 (1157)
T ss_pred HHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHH
Confidence 999999998865321 0000 0000 1123
Q ss_pred HHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHH------------HH
Q 004814 287 GFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT-LATY------------NI 353 (729)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~------------~~ 353 (729)
.+...|++++|+..|++.++.. +.+..++..+...+.+.|++++|+..|++..+...... ...| ..
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHH
Confidence 3455677777777777777654 23566677777777777777777777777766533211 1111 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 004814 354 LIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGD 433 (729)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 433 (729)
....+.+.|++++|.+.|++++...+ .+...+..+...+...|++++|++.|+++.+.. +.+...+..+...+. .++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~ 433 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQS 433 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcC
Confidence 23455667777777777777776554 445566667777777777777777777776643 223444445555543 345
Q ss_pred HHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 004814 434 LEVAQQLKENMINQGIL--------PDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS 505 (729)
Q Consensus 434 ~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 505 (729)
.++|..+++.+...... .....+..+...+...|++++|++.++++++.... +...+..+...+.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 67776666554321100 01123445566677788888888888888876432 4566677778888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhcCCHHH
Q 004814 506 EAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHI---------TYTSIIHASLEMGDLRR 576 (729)
Q Consensus 506 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---------~~~~l~~~~~~~g~~~~ 576 (729)
+|...++++++.. |.+...+..+...+...++.++|...++.+......++.. .+..+...+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 8888888887653 4556666666666677888888888887765432222221 12345566788899999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 577 GRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
|.++++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..|...|+.++|++.++++.+
T Consensus 592 A~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 592 AEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 9988872 25667788889999999999999999999999863 33677889999999999999999999998887
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC---H-HHHHHHHHhhhccchhhc-HHHHHHHhh
Q 004814 657 EGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREI-EPD---Y-CTHSALLLKQLDKDYKVH-AVEYLESLT 725 (729)
Q Consensus 657 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~pd---~-~~~~~ll~~~l~~~g~~~-a~~~l~~l~ 725 (729)
.. +.+...+..+..++...|++++|.+++++++.... .|+ . ..+..+ +..+.+.|+.+ |++.+++-.
T Consensus 666 ~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~-a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 666 TA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA-ARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred cC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH-HHHHHHcCCHHHHHHHHHHHH
Confidence 52 34556778888999999999999999999985322 121 1 233333 78888899998 888876653
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1.3e-26 Score=273.71 Aligned_cols=571 Identities=12% Similarity=0.009 Sum_probs=387.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
....-..+++....++.+.|...+++++..+|+ ++.++..++..+.+.|+.++|.+.++++.+..
T Consensus 28 ~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~---------------~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~ 92 (1157)
T PRK11447 28 QQQLLEQVRLGEATHREDLVRQSLYRLELIDPN---------------NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA 92 (1157)
T ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHccCCC---------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 344666777888899999999999999999887 57888899999999999999999999999987
Q ss_pred CCCChHhH----------------HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHH
Q 004814 204 LLPDVKNC----------------NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV-TYNTMLDSFCKEGEMQEALELL 266 (729)
Q Consensus 204 ~~~~~~~~----------------~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~ 266 (729)
+. +.... ......+.+.|++++|.+.|+.+.+.+ +|+.. ....+.......|+.++|++.|
T Consensus 93 P~-~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 93 PD-SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred CC-ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 54 32222 334457889999999999999999765 44432 1111222223469999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc----------------cCh---hhHH----------
Q 004814 267 WEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK----------------VSA---HSYN---------- 317 (729)
Q Consensus 267 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------------~~~---~~~~---------- 317 (729)
+++.+.. +.+...+..+...+...|+.++|.+.++++.+.... ++. ..+.
T Consensus 171 ~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~ 249 (1157)
T PRK11447 171 QRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD 249 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch
Confidence 9999872 446677888999999999999999999998653210 000 0010
Q ss_pred ------------------------HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 318 ------------------------PIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFE 373 (729)
Q Consensus 318 ------------------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (729)
.....+...|++++|+..|++..+..+. +...+..+...+.+.|++++|+..|++
T Consensus 250 ~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 250 SVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1123344556666666666666664332 555666666666666666666666666
Q ss_pred HHHCCCCC-CHhHH------------HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 004814 374 MLRKNVIP-DIISY------------NTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQL 440 (729)
Q Consensus 374 ~~~~~~~~-~~~~~------------~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 440 (729)
.++..+.. +...| ......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.
T Consensus 329 Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 329 ALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred HHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66544211 11111 112334556666666666666666543 22444555566666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 441 KENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ--------PDRFAYTTQIAGELKLGDTSEAYRLQE 512 (729)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~ 512 (729)
|+++++.. +.+...+..+...|. .++.++|+.+++.+...... .....+......+...|++++|+..++
T Consensus 408 y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 408 YQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666553 334445555555543 34556666665543321000 001123334456667888888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 513 EMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT 592 (729)
Q Consensus 513 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 592 (729)
+.++.. |.+...+..+...|.+.|++++|...++++++..+. +...+..+...+...++.++|...++.+......++
T Consensus 486 ~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~ 563 (1157)
T PRK11447 486 QRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSN 563 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChh
Confidence 887764 556677777888888888888888888888765432 444444445556677888888888776543321111
Q ss_pred h---------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004814 593 L---------VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK 663 (729)
Q Consensus 593 ~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (729)
. ..+..+...+...|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+.
T Consensus 564 ~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~ 637 (1157)
T PRK11447 564 IQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNA 637 (1157)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 1 1123455677888999999988772 24466677889999999999999999999999874 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHHHHHhhc
Q 004814 664 YTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEYLESLTL 726 (729)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l~~ 726 (729)
..+..++..+...|++++|++.+++++ ...|+.......++.++.+.|+.+ |.+.++++..
T Consensus 638 ~a~~~la~~~~~~g~~~eA~~~l~~ll--~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 638 DARLGLIEVDIAQGDLAAARAQLAKLP--ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHh--ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 889999999999999999999999988 567776555555588888999998 9998888643
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=3.5e-24 Score=241.06 Aligned_cols=588 Identities=12% Similarity=0.024 Sum_probs=418.8
Q ss_pred ChHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCC
Q 004814 89 DPELLVRVLNRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLS 168 (729)
Q Consensus 89 ~~~~~~~vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 168 (729)
++.+....+...+++++.|+..|+.+.+.. +.+..++..++.++...|++++|+..++++++.+|.
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~------------ 110 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG------------ 110 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc------------
Confidence 555566666677799999999999998754 467899999999999999999999999999999886
Q ss_pred CcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH--------HHHCCChhHHHHHHHHHHhCCCC
Q 004814 169 SCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKV--------LRDNGFSVKAREVYRMMGEFGIK 240 (729)
Q Consensus 169 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--------l~~~g~~~~A~~~~~~~~~~~~~ 240 (729)
+...+..+... +++++|..+++++.+..+. +..++..+... |.+. ++|.+.++ .......
T Consensus 111 ---n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~ 178 (987)
T PRK09782 111 ---DARLERSLAAI----PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAAS 178 (987)
T ss_pred ---cHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCC
Confidence 34444444332 8889999999999987655 45555555554 5555 44544444 3222223
Q ss_pred CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCccChhhHHH
Q 004814 241 PSIVTYNTM-LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSR-NGELEQARGLIRDMLKLGLKVSAHSYNP 318 (729)
Q Consensus 241 ~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 318 (729)
|+..+.... .+.|.+.|++++|++.+.++.+.+. .+..-...|..+|.. .++ +++..+++.. ++.+...+..
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~a 252 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRIT 252 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHH
Confidence 344444444 8899999999999999999998853 345556677778887 466 7777775542 2357888899
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHH------------------------------HHHHHHHHhcCCHHHH
Q 004814 319 IICGYSEKGLLVEALNLEEEMVTRGVA-PTLATY------------------------------NILIYGLCKWGRVSDA 367 (729)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~------------------------------~~li~~~~~~g~~~~A 367 (729)
++..|.+.|+.++|.++++++...-.. |...+| ..++..+.+.++++.+
T Consensus 253 la~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (987)
T PRK09782 253 YATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAA 332 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999887653211 222221 1124555566666655
Q ss_pred HHHHH-----------------------------HHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC-C-CCC
Q 004814 368 RHRFF-----------------------------EMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR-N-LVP 416 (729)
Q Consensus 368 ~~~~~-----------------------------~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~-~~~ 416 (729)
.++.. .|.... +.+....-.+.-...+.|+.++|.++|+..... + -.+
T Consensus 333 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 411 (987)
T PRK09782 333 QKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL 411 (987)
T ss_pred HHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc
Confidence 44422 111111 113333333444456788899999999887662 1 222
Q ss_pred CHhhHHHHHHHHHhcCC---HHHHHHH----------------------H---HHHHHCCCCC--CHHHHHHHHHHHHhc
Q 004814 417 TVVTYNTLIDGLCRYGD---LEVAQQL----------------------K---ENMINQGILP--DVITYTIMVNGSCKM 466 (729)
Q Consensus 417 ~~~~~~~ll~~~~~~g~---~~~A~~~----------------------~---~~~~~~~~~~--~~~~~~~l~~~~~~~ 466 (729)
+.....-++..|.+.+. ..++..+ + ...... .++ +...|..+..++..
T Consensus 412 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 412 SQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred CHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-
Confidence 34444466777776655 2333222 1 122211 134 67788888887776
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 467 GNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELL 546 (729)
Q Consensus 467 g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 546 (729)
++.++|+..+.+.... .|+......+...+.+.|++++|...++.+... +|+...+..+...+.+.|++++|...+
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7888999988888876 466554444455557899999999999987664 555556677788889999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004814 547 RKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 547 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 626 (729)
++.++..+ .+...+..+.....+.|++++|...+++.++. .|+...|..+..++.+.|++++|+..+++..+.. +.
T Consensus 566 ~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd 641 (987)
T PRK09782 566 QQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PN 641 (987)
T ss_pred HHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 99988752 23333444444555669999999999999987 4678889999999999999999999999999874 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLL 706 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~ 706 (729)
+...++.+..++...|+.++|+..+++..+.. +-+...+..+..++...|++++|+..+++++ ...|+......-..
T Consensus 642 ~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al--~l~P~~a~i~~~~g 718 (987)
T PRK09782 642 NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVI--DDIDNQALITPLTP 718 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCCchhhhhhh
Confidence 66788889999999999999999999999863 5567788999999999999999999999999 67787755554547
Q ss_pred hhhccchhhc-HHHHHH
Q 004814 707 KQLDKDYKVH-AVEYLE 722 (729)
Q Consensus 707 ~~l~~~g~~~-a~~~l~ 722 (729)
+.+.+.+.++ |.+-+.
T Consensus 719 ~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 719 EQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 7777777776 655443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=2e-23 Score=234.99 Aligned_cols=552 Identities=13% Similarity=-0.005 Sum_probs=400.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChH
Q 004814 130 ILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVK 209 (729)
Q Consensus 130 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 209 (729)
....+...|++++|+..|+++++.+|. +..++..|+..|.+.|++++|+..+++.++..+. |..
T Consensus 50 ~a~~~~~~Gd~~~A~~~l~~Al~~dP~---------------n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~ 113 (987)
T PRK09782 50 KALKAQKNNDEATAIREFEYIHQQVPD---------------NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DAR 113 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHH
Confidence 333445569999999999999999997 5778899999999999999999999999998652 444
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 210 NCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS--------FCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 210 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
.+..+ ..+ +++++|..+|+++.+.. +-+..++..+... |.+. ++|.+.++ .......|+..+.
T Consensus 114 ~~~~L-a~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL 184 (987)
T PRK09782 114 LERSL-AAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTL 184 (987)
T ss_pred HHHHH-HHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHH
Confidence 44444 323 89999999999999875 5567777776666 6555 55555555 3333334445544
Q ss_pred HHH-HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 282 NVL-ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE-KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC 359 (729)
Q Consensus 282 ~~l-i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 359 (729)
... ...|.+.|++++|++++.++.+.+. .+......+...|.. .++ +++..+++.. +.-+...+..++..|.
T Consensus 185 ~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi 258 (987)
T PRK09782 185 RTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALA 258 (987)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHH
Confidence 444 8999999999999999999999873 456667778888888 477 8888886542 3358889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC-CCHhHH------------------------------HHHHHHHHHcCCHHHHHHHHH-
Q 004814 360 KWGRVSDARHRFFEMLRKNVI-PDIISY------------------------------NTLLYGYCRSGNIGEAFLLFD- 407 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~------------------------------~~li~~~~~~g~~~~A~~l~~- 407 (729)
+.|+.++|.+++.++...... |+..+| ..++..+.+.++++.+.++..
T Consensus 259 ~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (987)
T PRK09782 259 YRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLAT 338 (987)
T ss_pred HCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999987654221 222222 122455566666665555422
Q ss_pred ----------------------------HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHH
Q 004814 408 ----------------------------ELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ--GILPDVITYT 457 (729)
Q Consensus 408 ----------------------------~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 457 (729)
.|.+. .+-+....-.+.-...+.|+.++|.++++..... +...+.....
T Consensus 339 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 339 LPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 11110 0112223333333456678888999998888762 1223455566
Q ss_pred HHHHHHHhcCC---HHHHHHH----------------------HHHHHHC-CC-CC--CHhhHHHHHHHHHhcCCHHHHH
Q 004814 458 IMVNGSCKMGN---LSMAREF----------------------FNEMLRK-GL-QP--DRFAYTTQIAGELKLGDTSEAY 508 (729)
Q Consensus 458 ~l~~~~~~~g~---~~~A~~~----------------------~~~~~~~-g~-~~--~~~~~~~li~~~~~~g~~~~A~ 508 (729)
.++..|.+.+. ..++..+ +...... +. .+ +...+..+..++.. ++.++|+
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 77788877765 3333332 1111111 11 22 45666777777766 8888999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 509 RLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG 588 (729)
Q Consensus 509 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 588 (729)
..+.+.... .|+......+...+...|++++|...++++... .|+...+..+...+.+.|+.++|...+++.++..
T Consensus 497 ~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~ 572 (987)
T PRK09782 497 YAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG 572 (987)
T ss_pred HHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988888776 355544445555667899999999999998765 3444556677788899999999999999998875
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004814 589 LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTI 668 (729)
Q Consensus 589 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 668 (729)
+++...+..+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|+..+++..+.. +.+...+..
T Consensus 573 -P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~n 648 (987)
T PRK09782 573 -LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAA 648 (987)
T ss_pred -CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 444444444445555679999999999999985 5678899999999999999999999999999974 556678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc-HHHHHHHh
Q 004814 669 LINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
+..++...|++++|+..+++++ ...|+.......++.++...|+.+ |.+.+++.
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL--~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAH--KGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999 678876665555599999999998 88877664
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.95 E-value=6.9e-22 Score=207.38 Aligned_cols=568 Identities=14% Similarity=0.064 Sum_probs=435.9
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHH
Q 004814 104 PRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIY 183 (729)
Q Consensus 104 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 183 (729)
.+.|..-|+.+.++. ++|+-.+---+.+....|+|..|..+|.+++...|.... .+...+..++
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~a--------------D~rIgig~Cf 209 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKA--------------DVRIGIGHCF 209 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCC--------------CccchhhhHH
Confidence 478999999998876 578877777777778889999999999999988776322 2223345677
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHC---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDN---GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
.+.|+.+.|+..|.++++.++. ++.++-.|...-... ..+..+...+...-..+ +.|+...+.|.+.|.-.|+++
T Consensus 210 ~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~ 287 (1018)
T KOG2002|consen 210 WKLGMSEKALLAFERALQLDPT-CVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYE 287 (1018)
T ss_pred HhccchhhHHHHHHHHHhcChh-hHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHH
Confidence 8999999999999999997652 444444443333333 34567777777776655 678899999999999999999
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 261 EALELLWEMQGRGCS--PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEE 338 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (729)
.+..+.+.+...... .-...|-.+.++|-..|++++|...|.+..+....-.+..+..+...|.+.|+++.+...|+.
T Consensus 288 ~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEk 367 (1018)
T KOG2002|consen 288 RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEK 367 (1018)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHH
Confidence 999999998875311 123357788999999999999999999998875333355667788999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH----h
Q 004814 339 MVTRGVAPTLATYNILIYGLCKWG----RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDEL----R 410 (729)
Q Consensus 339 m~~~g~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~ 410 (729)
..+..+. +..+...|...|...+ ..+.|..++.+..+..+ .|...|..+...+.... ...++..|... .
T Consensus 368 v~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~ 444 (1018)
T KOG2002|consen 368 VLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAWLELAQLLEQTD-PWASLDAYGNALDILE 444 (1018)
T ss_pred HHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHH
Confidence 9987433 6677777888887775 45677777777776553 67778888777776544 44446666544 3
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 411 SRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ---GIL------PDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 411 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
..+-.+.+...|.+.......|++..|...|...... ... ++..+-..+...+-..++++.|.+.|..+.+
T Consensus 445 ~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 445 SKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred HcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455577889999999999999999999999988765 112 2333455577777888999999999999998
Q ss_pred CCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHH
Q 004814 482 KGLQPDR-FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG-FIPDHI 559 (729)
Q Consensus 482 ~g~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~ 559 (729)
. .|.- ..|..+.......+...+|...+.+.+..+ ..++..+..+...+.+...+..|.+-|..+.+.- ..+|..
T Consensus 525 e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 525 E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 7 3443 334444434445678889999999988764 6677888888888988888888888777665542 235777
Q ss_pred HHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004814 560 TYTSIIHASLE------------MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN 627 (729)
Q Consensus 560 ~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 627 (729)
+..+|.+.|.+ .+..++|+++|.+.++.. |-|...-|.++-+++..|++.+|..+|.+..+... -+
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~ 679 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DF 679 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hC
Confidence 77777776543 345788999999999875 67888889999999999999999999999998743 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDMEEEG-ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
..+|-.++.+|..+|++..|++.|+...++- -..+..+...|.+++.+.|++.+|.+....++ ...|...
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~--~~~p~~~ 750 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR--HLAPSNT 750 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH--HhCCccc
Confidence 5678899999999999999999999988753 34466788999999999999999999999988 5555443
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=2.6e-23 Score=206.79 Aligned_cols=447 Identities=18% Similarity=0.146 Sum_probs=334.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 004814 246 YNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE 325 (729)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 325 (729)
...|.+-..+.|++++|++.-...-.. -+.+......+-..+.+..+.+...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 345556666777777777765444333 12222333334455666666665554444444432 3355677778888888
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-HHHHHHHHHHcCCHHHHHH
Q 004814 326 KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS-YNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~ 404 (729)
.|++++|+.+++.+++..+. .+..|..+..++...|+.+.|.+.|.+.++.+ |+... ...+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888888876443 66778888888888888888888888877754 44333 3344555566788888888
Q ss_pred HHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 405 LFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL 484 (729)
Q Consensus 405 l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 484 (729)
.|.+..+.. +-=...|+.|...+-.+|+...|++.|++..+.+ +.-...|..|...|...+.+++|...|.+....
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 887776653 1234567778888888888888888888888764 334567888888888888888888888888775
Q ss_pred CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 485 QP-DRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTS 563 (729)
Q Consensus 485 ~~-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 563 (729)
.| ....+..+...|..+|..+-|+..+++.++.. |.-...|+.|..++-..|+..+|...+.+.+...+. ...+.+.
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N 359 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN 359 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence 33 35666777777888899999999998888863 445789999999999999999999999999887432 4567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLR 642 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g 642 (729)
|...|...|.+++|..+|....+-. +.-....+.|...|-++|++++|+..+++++. +.|+ ...|+.++..|-..|
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence 9999999999999999999988763 33466788999999999999999999999987 5776 458899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 004814 643 RIDQAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
+++.|++.+.+++. +.|.. ..++.|..+|..+|+..+|++-|++++ .++||.+....-++.++.
T Consensus 437 ~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL--klkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL--KLKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH--ccCCCCchhhhHHHHHHH
Confidence 99999999999988 45654 478899999999999999999999999 788886554443344443
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.6e-20 Score=197.17 Aligned_cols=593 Identities=16% Similarity=0.104 Sum_probs=429.3
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHc
Q 004814 106 IALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTK 185 (729)
Q Consensus 106 ~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 185 (729)
.|-..|+-+.+..-..++...+......+.....++.|...|..+++..|..++..+. -+.....
T Consensus 112 ~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlG---------------kA~i~yn 176 (1018)
T KOG2002|consen 112 KATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLG---------------KARIAYN 176 (1018)
T ss_pred HHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHH---------------HHHHHhc
Confidence 3444455443322222333333333333333334678888888888887765433322 2233457
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG---EMQEA 262 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A 262 (729)
.|++..|+.+|.+++...+..-+.....+..++.+.|+.+.|+..|.+..+.+ |.++.++..|.-.-.... .+..+
T Consensus 177 kkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~ 255 (1018)
T KOG2002|consen 177 KKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKG 255 (1018)
T ss_pred cccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHH
Confidence 78999999999998876543222222345567789999999999999999876 345555555544433333 45567
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc--cChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 263 LELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK--VSAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
...+...-.. ..-|++..+.|.+.|.-.|+++.+..+...+...... .-...|..+.++|-..|++++|...|.+..
T Consensus 256 ~~ll~~ay~~-n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~ 334 (1018)
T KOG2002|consen 256 VQLLQRAYKE-NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL 334 (1018)
T ss_pred HHHHHHHHhh-cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7777666554 2447788899999999999999999999999875321 123468889999999999999999999888
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC----CHHHHHHHHHHHhhCCCCC
Q 004814 341 TRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSG----NIGEAFLLFDELRSRNLVP 416 (729)
Q Consensus 341 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~~~~~ 416 (729)
+....--+..+--|...+.+.|+++.+...|+...+..+ .+..+...|...|...+ ..+.|..++.+..+.- +.
T Consensus 335 k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~ 412 (1018)
T KOG2002|consen 335 KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PV 412 (1018)
T ss_pred ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cc
Confidence 754332244556788999999999999999999998764 56778888888888775 5677888888777653 45
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH-
Q 004814 417 TVVTYNTLIDGLCRYGDLEVAQQLKENMI----NQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK---GLQPDR- 488 (729)
Q Consensus 417 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~~~~- 488 (729)
|...|..+...+... +...+...+..+. ..+..+.+...|.+...+...|++.+|...|...... ...+|.
T Consensus 413 d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~ 491 (1018)
T KOG2002|consen 413 DSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEG 491 (1018)
T ss_pred cHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc
Confidence 777887777666544 4444466665544 4455677889999999999999999999999998875 222333
Q ss_pred -----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 489 -----FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTS 563 (729)
Q Consensus 489 -----~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 563 (729)
.+-..+..++...++.+.|.+.|..+++.. |.-+..|-.++......++..+|...+....... ..++..++.
T Consensus 492 ~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 492 KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 233445667778889999999999999872 3334455555533344577889999999988764 346677778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKG-LSPTLVTYTVLIHAHAA------------RGRLELAFMYFSEMQVKGIRPNVIT 630 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~g~~p~~~~ 630 (729)
+...+.+..++..|.+-|+.+.+.- ..+|..+...|++.|.+ .+..++|+++|.+++.... -|...
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yA 648 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYA 648 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhh
Confidence 8888999999999999777776652 13566666677775542 3457889999999998643 37777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 004814 631 YNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 631 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
-|.++-.+...|++.+|..+|.+..+.. .....+|..++++|..+|+|-.|++.|+..+..-.+.+......+|+.++.
T Consensus 649 ANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 649 ANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred ccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 7889999999999999999999999864 345678999999999999999999999999865555555555666699999
Q ss_pred cchhhc-HHHHHH
Q 004814 711 KDYKVH-AVEYLE 722 (729)
Q Consensus 711 ~~g~~~-a~~~l~ 722 (729)
+.|.+. |.+.+.
T Consensus 728 ~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 728 EAGKLQEAKEALL 740 (1018)
T ss_pred HhhhHHHHHHHHH
Confidence 999987 777653
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=1.9e-22 Score=200.74 Aligned_cols=446 Identities=15% Similarity=0.136 Sum_probs=345.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
...+.+-+.+.|++++|.+....+...+|.. ....-.+..+|.+..+.+.....-....+..+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~---------------~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q- 114 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTN---------------TERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ- 114 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCc---------------ccceeeehhhhhcccchhhhhhhhhhhhhccch-
Confidence 5678888999999999998887777777653 122223445566777777776666666665443
Q ss_pred ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 004814 207 DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY-NVLI 285 (729)
Q Consensus 207 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li 285 (729)
-..+|..+.+.+...|++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|.+..+. .|+.... ..+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lg 191 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcchh
Confidence 56678889999999999999999999999875 556889999999999999999999999988875 5665543 3455
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 286 TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVS 365 (729)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 365 (729)
..+-..|+.++|..-+.+.++... --..+|+.|...+-..|+...|+..|++.++..+. -...|..|...|...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcch
Confidence 666678999999999999887642 34678899999999999999999999998875332 3467888888999999999
Q ss_pred HHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 366 DARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPT-VVTYNTLIDGLCRYGDLEVAQQLKENM 444 (729)
Q Consensus 366 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~ 444 (729)
+|...+.+.....+ -....+..+...|..+|.+|-|++.|++..+.. |+ ...|+.|..++-..|++.+|.+.+.+.
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99998888877543 446677778888888999999999999888753 33 567888999999999999999999988
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD-RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL 523 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 523 (729)
+... +......+.|...|..+|.+++|..+|....+. .|. ....+.+...|-++|++++|+..+++.++-. |.-.
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fA 422 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFA 422 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHH
Confidence 8863 445678888899999999999999999888875 333 4567778888888888888888888887752 3335
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHH
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT-LVTYTVLIHA 602 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 602 (729)
.+|+.+...|-..|+.+.|.+.+.+.+..++. -....+.|...|...|++.+|+.-++..++. +|| +..|..++.+
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHC 499 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHH
Confidence 67888888888888888888888888875422 3456778888888888888888888888875 344 4455555544
Q ss_pred H
Q 004814 603 H 603 (729)
Q Consensus 603 ~ 603 (729)
+
T Consensus 500 l 500 (966)
T KOG4626|consen 500 L 500 (966)
T ss_pred H
Confidence 3
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=3.8e-19 Score=197.62 Aligned_cols=255 Identities=13% Similarity=0.071 Sum_probs=169.9
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHH
Q 004814 431 YGDLEVAQQLKENMINQG--ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD-RFAYTTQIAGELKLGDTSEA 507 (729)
Q Consensus 431 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A 507 (729)
.+++++|.+.|+..++.+ .+.....+..+...+...|++++|+..+++.++. .|+ ...+..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 356677777777776653 1223455666666777777777777777777765 233 44566666677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 508 YRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 508 ~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (729)
...++.+++.. +.+..+|..+...+...|++++|...|++.++..+ .+...+..+...+.+.|++++|...+++.++.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777776653 55567777777777777778888877777777642 24556666777777778888888888777765
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004814 588 GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI------TYNALINGLCRLRRIDQAYGLFIDMEEEGILP 661 (729)
Q Consensus 588 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (729)
. +.+...++.+...+...|++++|++.|++..+.....+.. .++..+..+...|++++|.+++++..+.+ +.
T Consensus 463 ~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~ 540 (615)
T TIGR00990 463 F-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PE 540 (615)
T ss_pred C-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC
Confidence 3 4456677777777777888888888887777642211111 11222223334577888888888777653 33
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 662 NKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 662 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+...+..++..+.+.|++++|++.|+++++
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 444677777888888888888888888773
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=6.1e-19 Score=195.95 Aligned_cols=430 Identities=12% Similarity=-0.019 Sum_probs=210.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..|.+.|++++|+..|+++++.. |+...|..+..+|.+.|++++|++.++..++.. +.+..+|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 35567778888888888888888888754 566677788888888888888888888888765 456778888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
..|++++|+..|......+...+. ....++..+.. ..+........+.. +.+...+..+...+ ...+...+..
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 888888888887766544211111 11111111111 12223333333322 22222333222221 1111111111
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 335 LEEEMVTRGVAPTL-ATYNILIYG---LCKWGRVSDARHRFFEMLRKN--VIPDIISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 335 ~~~~m~~~g~~p~~-~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
-+.+..+. .+.. ..+..+... ....+++++|.+.|+..+..+ .+.+...++.+...+...|++++|+..+++
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11111100 0000 001111100 012244555555555555432 112233444455555555555555555555
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 409 LRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR 488 (729)
Q Consensus 409 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 488 (729)
..+.. +.+...|..+...+...|++++|...++++++.. +.+..+|..+...+...|++++|+..|++.++..
T Consensus 357 al~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~----- 429 (615)
T TIGR00990 357 SIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD----- 429 (615)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----
Confidence 54432 1123344444445555555555555555554442 2334445555555555555555555555554432
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (729)
|.+...+..+...+.+.|++++|+..+++.++.. +.+...++.+...+
T Consensus 430 -------------------------------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~ 477 (615)
T TIGR00990 430 -------------------------------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELL 477 (615)
T ss_pred -------------------------------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3334444444445555555555555555544432 11344444455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTL------VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR 642 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 642 (729)
...|++++|.+.|++.+......+. ..++..+..+...|++++|.+++++..+... .+...+..++..+...|
T Consensus 478 ~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 478 LDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcc
Confidence 5555555555555554443210000 0111111222234566666666666555421 13334555666666666
Q ss_pred CHHHHHHHHHHHHH
Q 004814 643 RIDQAYGLFIDMEE 656 (729)
Q Consensus 643 ~~~~A~~~~~~m~~ 656 (729)
++++|+++|++..+
T Consensus 557 ~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 557 DVDEALKLFERAAE 570 (615)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666555
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.5e-20 Score=198.44 Aligned_cols=302 Identities=14% Similarity=0.094 Sum_probs=179.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhc
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS---IVTYNTMLDSFCKE 256 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~ 256 (729)
+..+...|++++|+..|+++.+.++. +..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 44456677777788888887776543 455667777777777777777777777766431111 24566677777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccCh----hhHHHHHHHHHhCCCHHHH
Q 004814 257 GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSA----HSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 257 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A 332 (729)
|++++|..+|+++.+. .+++..+++.++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 7777777777777664 2345566777777777777777777777777665432211 1234455555666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR 412 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 412 (729)
.+.++++.+.... +...+..+...+.+.|++++|.+.++++...++.....+++.++.+|+..|+.++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666666654322 344555556666666666666666666655432222344555556666666666666666665554
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCH
Q 004814 413 NLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCK---MGNLSMAREFFNEMLRKGLQPDR 488 (729)
Q Consensus 413 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~ 488 (729)
. |+...+..++..+.+.|++++|..+++++.+. .|+...++.++..++. .|+.+++..+++++.+.++.|++
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 2 33344455555556666666666666555554 3455555555554443 33555555555555554444443
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=3e-20 Score=196.12 Aligned_cols=259 Identities=17% Similarity=0.125 Sum_probs=112.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCCH
Q 004814 358 LCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPT---VVTYNTLIDGLCRYGDL 434 (729)
Q Consensus 358 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~ 434 (729)
+...|++++|...|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555555432 2334455555555555555555555555544321111 12344555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHhcCCHHHHHHH
Q 004814 435 EVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR----FAYTTQIAGELKLGDTSEAYRL 510 (729)
Q Consensus 435 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~l 510 (729)
++|..+++++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 55555555555432 334455555555555666666666665555554322111 0112222333334444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004814 511 QEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLS 590 (729)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 590 (729)
++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 44433321 22233333344444444444444444444443321111223333344444444444444444444333 1
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 591 PTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 591 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
|+...+..++..+.+.|++++|..+++++.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~ 310 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLR 310 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2223333334444444444444444444333
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=1.3e-18 Score=192.50 Aligned_cols=335 Identities=13% Similarity=0.071 Sum_probs=278.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 204 (729)
...-.++..+.+.|++++|..+++..+...|. +...+..++......|++++|+..|+++.+..+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~---------------~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P 107 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN---------------GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV 107 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC---------------chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC
Confidence 33445667788999999999999999988776 466677777888899999999999999999876
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVL 284 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 284 (729)
. +...+..+...+.+.|++++|...|+++.+.. +.+...+..++..+...|++++|...++.+..... .+...+..+
T Consensus 108 ~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~ 184 (656)
T PRK15174 108 C-QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC 184 (656)
T ss_pred C-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 5 67788889999999999999999999999864 56678899999999999999999999998877632 233344333
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 285 ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRV 364 (729)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 364 (729)
..+.+.|++++|...++.+++....++...+..+...+...|++++|...++++....+. +...+..+...+...|++
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRS 262 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCc
Confidence 347889999999999999988754445555566678889999999999999999987544 677888899999999999
Q ss_pred HH----HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 004814 365 SD----ARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQL 440 (729)
Q Consensus 365 ~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 440 (729)
++ |...|++.....+ .+...+..+...+...|++++|+..+++..... +.+...+..+..++.+.|++++|...
T Consensus 263 ~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 263 REAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred hhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 86 8999999998765 467889999999999999999999999998864 33566777888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 441 KENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
++++.+.+ +.+...+..+..++...|+.++|...|+++.+.
T Consensus 341 l~~al~~~-P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 341 FVQLAREK-GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHhC-ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99998864 223344555677889999999999999999887
No 22
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.88 E-value=2.7e-16 Score=164.94 Aligned_cols=599 Identities=15% Similarity=0.095 Sum_probs=373.6
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHH
Q 004814 100 IREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLL 179 (729)
Q Consensus 100 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 179 (729)
.+|+.+.|..++..+.++. +.+...|.+++.++-..|+.+.+....-.+-..+|. +...|..+
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---------------d~e~W~~l 213 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---------------DYELWKRL 213 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---------------ChHHHHHH
Confidence 3688889999998888776 467888999999999999888887766555555554 46788888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHh
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV----TYNTMLDSFCK 255 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~ 255 (729)
.....+.|++++|.-.|.++++..+. +....-.-...|.+.|+...|..-|.++.....+.+.. .--.+++.+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999887654 44444556777888899999999999888764222222 22234566777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc-----------------------
Q 004814 256 EGEMQEALELLWEMQGRG-CSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV----------------------- 311 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----------------------- 311 (729)
.++.+.|.+.++.....+ -..+...++.++..+.+...++.|.....++......+
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 777788888888776632 23355577888888888888888888887776621111
Q ss_pred ----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 004814 312 ----SAHSYNPIICGYSEKGLLVEALNLEEEMVTRG--VAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS 385 (729)
Q Consensus 312 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 385 (729)
+..++ .+.-++......+....+.....+.. +.-++..|.-+..+|...|++.+|+.+|..+.......+...
T Consensus 373 ~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 11221 12222333333333333444444444 444667788888999999999999999999888766667788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHH
Q 004814 386 YNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ--------GILPDVITYT 457 (729)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~ 457 (729)
|..+...|...|.+++|.+.|+...... +-+...-.+|...+.+.|+.++|.+.+..+..- +..|+.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 8889999999999999999998887753 234555667777888889999999988886522 2345555556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCC-----------------HhhHHHHHHHHHhcCCHHHHHHHHH---
Q 004814 458 IMVNGSCKMGNLSMAREFFNEMLRKGL-----QPD-----------------RFAYTTQIAGELKLGDTSEAYRLQE--- 512 (729)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~g~-----~~~-----------------~~~~~~li~~~~~~g~~~~A~~l~~--- 512 (729)
.....+.+.|+.++-+.+-..|+..+. -|+ .......+.+-.+.++.....+-..
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 667778888888877666666654211 010 0111111122222222111111000
Q ss_pred ---HHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 004814 513 ---EMLAKGFPPDL--ITYNVLVHGLCKLGSLEEANELLRKMVGDGFI-PDHI----TYTSIIHASLEMGDLRRGRDLFN 582 (729)
Q Consensus 513 ---~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~----~~~~l~~~~~~~g~~~~A~~~~~ 582 (729)
-....|...+. ..+..++..+++.+++++|+.+...+...... -+.. .-...+.+.+..+++..|...++
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 00001111111 23345566667777777777776666553211 1111 12233445556667777766666
Q ss_pred HHHHC-CC---CCChhhHHHH-----------------------------------HHHHHHcCCHHHHHHHHHHHHHCC
Q 004814 583 NMLRK-GL---SPTLVTYTVL-----------------------------------IHAHAARGRLELAFMYFSEMQVKG 623 (729)
Q Consensus 583 ~~~~~-~~---~~~~~~~~~l-----------------------------------~~~~~~~g~~~~A~~~~~~~~~~g 623 (729)
.|... +. +--...|+.. ..-....+.+.-|+..+-++...
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~- 769 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ- 769 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh-
Confidence 66543 00 1112223311 12223456677788877777664
Q ss_pred CCCCHHHHH-HHHHHHHh----------cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 624 IRPNVITYN-ALINGLCR----------LRRIDQAYGLFIDMEEEGIL-PNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 624 ~~p~~~~~~-~l~~~~~~----------~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.|+....+ +++.++.. +-.+-+++.++.+..+.... ....++..++++|-..|-..-|..+|++.+
T Consensus 770 -~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL- 847 (895)
T KOG2076|consen 770 -NPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVL- 847 (895)
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh-
Confidence 45533333 33333221 11244567777666664211 245677789999999999999999999999
Q ss_pred CCCCCCH--------------HHHHHHHHhhhccchhhc-HHHHHHHh
Q 004814 692 REIEPDY--------------CTHSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 692 ~~~~pd~--------------~~~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
++.|-. ..|+. .-.|..+|... |.+++++.
T Consensus 848 -~~~p~~~~~~~~d~~dLrkeAA~NL--~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 848 -EVSPKDVTDPKEDNYDLRKEAAYNL--HLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred -CCCccccccccCCcccHHHHHHhhh--hhhhccCCcHHHHHHHHHhh
Confidence 553211 22332 34578899988 88887653
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=7.2e-18 Score=190.68 Aligned_cols=428 Identities=13% Similarity=0.064 Sum_probs=265.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHH
Q 004814 240 KPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPI 319 (729)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 319 (729)
+.+..-..-.+......|+.++|++++.+.... -+.+...+..+...+...|++++|.+++++.++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 344444555566667778888888888877652 13345567777788888888888888888877764 3356667777
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 004814 320 ICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNI 399 (729)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 399 (729)
+..+...|++++|+..+++..+..+. +.. +..+...+...|+.++|+..++++.+..+ .+...+..+...+...|..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 77778888888888888887776332 444 77777777788888888888888877654 3455556667777777777
Q ss_pred HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHH
Q 004814 400 GEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNL---SMAREFF 476 (729)
Q Consensus 400 ~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~ 476 (729)
++|+..++.... .|+.. . -+ +...+....+.. +.......+++ ++|++.+
T Consensus 167 e~Al~~l~~~~~---~p~~~--~-~l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAEK--R-DL-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHHH--H-HH-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHH
Confidence 777777765543 22210 0 00 000000000000 00000111122 5566666
Q ss_pred HHHHHC-CCCCCHh-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 477 NEMLRK-GLQPDRF-AYT----TQIAGELKLGDTSEAYRLQEEMLAKGFP-PDLITYNVLVHGLCKLGSLEEANELLRKM 549 (729)
Q Consensus 477 ~~~~~~-g~~~~~~-~~~----~li~~~~~~g~~~~A~~l~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 549 (729)
+.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 666543 1122211 111 1122344556777777777777665421 221 1122455677777777777777776
Q ss_pred HhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---hhhHHHHHHHHHHcCCHHHH
Q 004814 550 VGDGFIP---DHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL-----------SPT---LVTYTVLIHAHAARGRLELA 612 (729)
Q Consensus 550 ~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A 612 (729)
.+..... .......+..++...|++++|.+.++.+..... .|+ ...+..+...+...|+.++|
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA 378 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQA 378 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHH
Confidence 6543211 123445555566777777777777777765420 122 22445667778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 613 FMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDR 692 (729)
Q Consensus 613 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 692 (729)
+++++++.... +.+...+..++..+...|+.++|++.+++..+.. |.+...+...+..+.+.|++++|...+++++
T Consensus 379 ~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll-- 454 (765)
T PRK10049 379 EMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVV-- 454 (765)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH--
Confidence 88888888763 3356778888888888888888888888888753 3345566677778888888888888888888
Q ss_pred CCCCCHHHHHHH
Q 004814 693 EIEPDYCTHSAL 704 (729)
Q Consensus 693 ~~~pd~~~~~~l 704 (729)
...|+......+
T Consensus 455 ~~~Pd~~~~~~~ 466 (765)
T PRK10049 455 AREPQDPGVQRL 466 (765)
T ss_pred HhCCCCHHHHHH
Confidence 567776654444
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=7.6e-18 Score=186.32 Aligned_cols=330 Identities=15% Similarity=0.065 Sum_probs=273.0
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
..+..+.+.|++++|+.+++..+...+. +...+..++.++...|++++|...|+++.+.. |.+...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3455678899999999999999998766 55666677788888999999999999999875 667788999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHH
Q 004814 258 EMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEE 337 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (729)
++++|...++++.+. .+.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|.+.++
T Consensus 125 ~~~~Ai~~l~~Al~l-~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLA-FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 999999999999886 2345678888999999999999999999988776533 33344333 34788999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----HHHHHHHHhhCC
Q 004814 338 EMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE----AFLLFDELRSRN 413 (729)
Q Consensus 338 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~ 413 (729)
.+......++...+..+...+.+.|++++|.+.+.+.....+ .+...+..+...+...|++++ |...|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 988765444555566667888999999999999999998765 567788889999999999986 899999988764
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHH
Q 004814 414 LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR-FAYT 492 (729)
Q Consensus 414 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~ 492 (729)
+.+...+..+...+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..++++.+.+ |+. ..+.
T Consensus 281 -P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~ 356 (656)
T PRK15174 281 -SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNR 356 (656)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 3367788899999999999999999999999875 4467788888999999999999999999999863 443 3344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 493 TQIAGELKLGDTSEAYRLQEEMLAK 517 (729)
Q Consensus 493 ~li~~~~~~g~~~~A~~l~~~~~~~ 517 (729)
.+...+...|+.++|...++...+.
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4566788999999999999998876
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=9e-18 Score=189.90 Aligned_cols=405 Identities=13% Similarity=0.028 Sum_probs=195.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...-.-.+.+....|+.++|+.++.+....++. +...+..++..+.+.|++++|...++++++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~---------------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~ 77 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQL---------------PARGYAAVAVAYRNLKQWQNSLTLWQKALS 77 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445556666667777776666665543322 344556666666677777777777777666
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
..+. +...+..++.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+
T Consensus 78 ~~P~-~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~ 153 (765)
T PRK10049 78 LEPQ-NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYP 153 (765)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5432 34445566666666777777777777766653 44455 6666666667777777777777766652 2234444
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCCCccCh------hhHHHHHHHHH-----hCCCH---HHHHHHHHHHHHC-CCCC
Q 004814 282 NVLITGFSRNGELEQARGLIRDMLKLGLKVSA------HSYNPIICGYS-----EKGLL---VEALNLEEEMVTR-GVAP 346 (729)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p 346 (729)
..+...+...|..++|.+.++...+ .|+. .....++.... ..+++ ++|++.++.+.+. ...|
T Consensus 154 ~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 154 TEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred HHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 5556666666666666666655443 1110 01111111111 11222 4455555555532 1111
Q ss_pred CHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC---C
Q 004814 347 TLA-TY----NILIYGLCKWGRVSDARHRFFEMLRKNVI-PDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVP---T 417 (729)
Q Consensus 347 ~~~-~~----~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~---~ 417 (729)
+.. .+ ...+..+...|++++|++.|+.+.+.+.. |+. ....+...|...|++++|+..|+++.+..... .
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 111 11 01122233445566666666665554321 221 11113445555666666666665554432110 0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 418 VVTYNTLIDGLCRYGDLEVAQQLKENMINQGI-----------LPD---VITYTIMVNGSCKMGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 418 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 483 (729)
......+..++.+.|++++|.++++.+.+... .|+ ...+..+...+...|+.++|+++++++....
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~ 389 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA 389 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 12233344445555556666655555554321 011 1123333444444455555555554444432
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 484 LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVG 551 (729)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 551 (729)
.. +...+..+...+...|++++|++.+++.+... |.+...+...+..+.+.|++++|+.+++++++
T Consensus 390 P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 390 PG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 11 23334444444444444444444444444432 22333333444444444444444444444444
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=2e-16 Score=175.05 Aligned_cols=444 Identities=11% Similarity=0.004 Sum_probs=305.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+..+.+.-.-+-+..+.|++++|+..|+++++.+|.. .+.++ .++..+...|+.++|+..+++..
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~--------------~~av~-dll~l~~~~G~~~~A~~~~eka~ 95 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQ--------------SGQVD-DWLQIAGWAGRDQEVIDVYERYQ 95 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccc--------------hhhHH-HHHHHHHHcCCcHHHHHHHHHhc
Confidence 3344444455556889999999999999999988762 12333 67778888899999999999998
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 280 (729)
.... ........++..+...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++... .|+...
T Consensus 96 ~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 96 SSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 3211 123333344668888899999999999999876 556778888889999999999999999999886 566666
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHH
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATY--NILIYGL 358 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--~~li~~~ 358 (729)
+..++..+...++..+|.+.++++.+.. +.+...+..+...+.+.|-...|+++..+-... +.+....+ ...+.-.
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~ 249 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQ 249 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHH
Confidence 6555555555677767999999999885 447778888899999999999998876653321 11111111 0001111
Q ss_pred Hh---------cCC---HHHHHHHHHHHHHC-CCCCCH-h----HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh
Q 004814 359 CK---------WGR---VSDARHRFFEMLRK-NVIPDI-I----SYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVT 420 (729)
Q Consensus 359 ~~---------~g~---~~~A~~~~~~~~~~-~~~~~~-~----~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~ 420 (729)
.+ .++ .+.|+.-++.+... +..|.. . ...-.+-++...|++.++++.|+.+...+.+....+
T Consensus 250 vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~ 329 (822)
T PRK14574 250 VRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYA 329 (822)
T ss_pred HhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHH
Confidence 11 122 34455555555542 111322 1 223445567788889999999998888776655667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------
Q 004814 421 YNTLIDGLCRYGDLEVAQQLKENMINQG-----ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL----------- 484 (729)
Q Consensus 421 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~----------- 484 (729)
-..+.++|...+++++|..+++.+.... .+++......|.-+|...+++++|..+++.+.+...
T Consensus 330 ~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 409 (822)
T PRK14574 330 RRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGK 409 (822)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCC
Confidence 7788888999999999999998887643 123444456788888888999999999888887411
Q ss_pred --CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 485 --QPDR-FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561 (729)
Q Consensus 485 --~~~~-~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 561 (729)
.||- .....++..+...|+..+|.+.++++.... |.|......+.+.+...|.+.+|++.++.+.... +-+..+.
T Consensus 410 ~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~ 487 (822)
T PRK14574 410 EPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILE 487 (822)
T ss_pred CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHH
Confidence 1111 122334556667777777777777776653 6677777777777777777777777776665553 2245566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (729)
...+.++...+++++|..+.+.+.+.
T Consensus 488 ~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 488 RAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 66666777777777777777777665
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=4.4e-16 Score=172.38 Aligned_cols=457 Identities=15% Similarity=0.088 Sum_probs=281.0
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI--VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFS 289 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 289 (729)
..-+-...+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.... ..........+...+.
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHH
Confidence 334455678888888888888888764 332 233 7777777888888888888887722 1122333333456777
Q ss_pred hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 290 RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARH 369 (729)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 369 (729)
..|++++|.++++++.+..+. ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 778888888888888877533 5666777778888888888888888887765 3455555555555545566666888
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 370 RFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGI 449 (729)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 449 (729)
.++++.+..+ .+...+..+..+..+.|-...|.++..+-. +..+-...... +.+.|.+..+.. .
T Consensus 191 ~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l-----~~~~~a~~vr~a----~ 254 (822)
T PRK14574 191 ASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL-----ERDAAAEQVRMA----V 254 (822)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH-----HHHHHHHHHhhc----c
Confidence 8888888764 456667777788888888878776665522 22211111100 011121111111 0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK-GLQPDRF-----AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL 523 (729)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 523 (729)
.++..- - .+.--.+.|+.-++.+... +..|... ...-.+.++.+.|++.++++.++.+...+.+...
T Consensus 255 ~~~~~~----~---~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~ 327 (822)
T PRK14574 255 LPTRSE----T---ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPD 327 (822)
T ss_pred cccccc----h---hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCH
Confidence 010000 0 0001234455555554442 1112211 1223345666777777777777777776655455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGF-----IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL--------- 589 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------- 589 (729)
.+-.++.++|...+++++|..+++.+..... .++......|..++...+++++|..+++++.+...
T Consensus 328 y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~ 407 (822)
T PRK14574 328 YARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLP 407 (822)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCC
Confidence 5666777777777777777777777755421 22333346677777777777777777777776310
Q ss_pred --CCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004814 590 --SPT---LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY 664 (729)
Q Consensus 590 --~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (729)
.|| ...+..++..+...|+..+|++.++++.... +-|......+.+.+...|+..+|.+.++.+.... +-+..
T Consensus 408 ~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~ 485 (822)
T PRK14574 408 GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLI 485 (822)
T ss_pred CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHH
Confidence 111 1223345566777788888888888887653 3367777778888888888888888886665542 33445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHS 702 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~ 702 (729)
+....+.++...|+|++|..+.+.++ ...|+.....
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~--~~~Pe~~~~~ 521 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVI--SRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH--hhCCCchhHH
Confidence 66677777777788888888887777 5666655433
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.85 E-value=1.2e-14 Score=146.82 Aligned_cols=604 Identities=13% Similarity=0.061 Sum_probs=440.3
Q ss_pred CCChHHHHHHHHHhc-------CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhcc-----
Q 004814 87 VSDPELLVRVLNRIR-------EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVN----- 154 (729)
Q Consensus 87 ~~~~~~~~~vl~~~~-------~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~----- 154 (729)
..||...+.-|++.. +|...|..+++.+.+-. +.++..|.+-.+.=-..|.++.|..+..+--+.-
T Consensus 243 vvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeD 320 (913)
T KOG0495|consen 243 VVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSED 320 (913)
T ss_pred ccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHH
Confidence 346665555555432 25678999999887644 4566677777766667788888877665433322
Q ss_pred ---------chhhhHHHhhcCCCC-cchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCCh
Q 004814 155 ---------MHGILDVLIGGGLSS-CVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFS 224 (729)
Q Consensus 155 ---------~~~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~ 224 (729)
|......++...+.. +.|+.+|-..+.. ..+...=..++++.++.-+. ++..| .+-+.....
T Consensus 321 vWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~iP~-sv~LW----KaAVelE~~ 392 (913)
T KOG0495|consen 321 VWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADL---ESDTKNKKRVLRKALEHIPR-SVRLW----KAAVELEEP 392 (913)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhh---hhHHHHHHHHHHHHHHhCCc-hHHHH----HHHHhccCh
Confidence 222222222222111 2233433222211 11222334566666665432 33333 334455566
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 225 VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDM 304 (729)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 304 (729)
+.|+.++.+..+.- +.+...| -++.+..-|+.|.+++....+. ++.+...|.+-...=-.+|+.+...+++++-
T Consensus 393 ~darilL~rAvecc-p~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 393 EDARILLERAVECC-PQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHHhc-cchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 77888888888752 3334444 4566677899999999999887 7778888988888888899999998888765
Q ss_pred H----hCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 305 L----KLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP--TLATYNILIYGLCKWGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 305 ~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 378 (729)
+ ..|+..+...|..=...+-..|..-.+..+....+.-|++- -..||+.-.+.|.+.+.++-|+.+|...++.-
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 4 46888888889888888989999999999988888877653 24688888899999999999999999988865
Q ss_pred CCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 379 VIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTI 458 (729)
Q Consensus 379 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 458 (729)
+ .+...|...+..--..|..++-..+|++.... ++.....|......+-..|++..|..++.++.+.. +.+...|..
T Consensus 547 p-~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwla 623 (913)
T KOG0495|consen 547 P-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLA 623 (913)
T ss_pred c-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 4 56778888888888889999999999998876 34455566666677778899999999999999875 447788888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGS 538 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~ 538 (729)
-+........+++|..+|.+.... .|+...|..-+....-.+..++|.+++++.++. +|.-...|..+.+.+-+.++
T Consensus 624 avKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ 700 (913)
T KOG0495|consen 624 AVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMEN 700 (913)
T ss_pred HHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHH
Confidence 888889999999999999998875 566777777777777788999999999998886 45557788888899999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 539 LEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSE 618 (729)
Q Consensus 539 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (729)
.+.|.+.|..-.+.- +..+..|-.+...-.+.|.+-+|..+++....++ |.+...|...|.+-.+.|..+.|..+..+
T Consensus 701 ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 701 IEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999888766652 3345678888888888899999999999998876 77888999999999999999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 619 MQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 619 ~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+++. ++.+...|..-|....+.++-...+..+++ +.-|+.....+...+....++++|++.|.+.+ .+.||.
T Consensus 779 ALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Rav--k~d~d~ 850 (913)
T KOG0495|consen 779 ALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAV--KKDPDN 850 (913)
T ss_pred HHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCcc
Confidence 8876 555666777777777777775555444433 34567777777888888888889999888888 667764
Q ss_pred H-HHHHHHHhhhccchhhc-HHHHHHH
Q 004814 699 C-THSALLLKQLDKDYKVH-AVEYLES 723 (729)
Q Consensus 699 ~-~~~~ll~~~l~~~g~~~-a~~~l~~ 723 (729)
- +|..+ .....+.|..+ -.+++.+
T Consensus 851 GD~wa~f-ykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 851 GDAWAWF-YKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred chHHHHH-HHHHHHhCCHHHHHHHHHH
Confidence 3 44444 55555555444 5555443
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.84 E-value=8.9e-18 Score=161.69 Aligned_cols=503 Identities=17% Similarity=0.154 Sum_probs=320.6
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHHHHHCCChhHHHHHHHHHHhCCCCCC------hh
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN-RIIKVLRDNGFSVKAREVYRMMGEFGIKPS------IV 244 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~------~~ 244 (729)
+..++..|++.|..+.+..+|+..|+-+++....|+.-... .+.+.+.+.+.+..|+++|+..+.. .|+ ..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 45567778899999999999999999999988877765433 3667788899999999999988765 233 22
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
..+.+...+.+.|+++.|+..|+...+. .|+..+-..|+-.+...|+.++..+.|.+|+.....+|..-|.
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi------- 348 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYI------- 348 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccccc-------
Confidence 4555566678899999999999988776 6787765556666667899999999999998765444433221
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIY-----GLCKWG--RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSG 397 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 397 (729)
+ ..-.|+....+.-|. -.-+.. +-++++-.-..++.--+.||-..
T Consensus 349 ~----------------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------ 400 (840)
T KOG2003|consen 349 K----------------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------ 400 (840)
T ss_pred C----------------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------
Confidence 0 011122222111111 011111 11111111111222111122110
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-h-cCCHHHHHHH
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSC-K-MGNLSMAREF 475 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~g~~~~A~~~ 475 (729)
-.+-+++.++.-....+..+.. ..-...+.+.|+++.|.+++.-..+.+-+.....-+.|-..+. + ..++..|..+
T Consensus 401 g~dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqy 478 (840)
T KOG2003|consen 401 GCDWCLESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQY 478 (840)
T ss_pred ccHHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHH
Confidence 0122233332221111111111 1122346678888888888887776543322333333322222 2 2356666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004814 476 FNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFI 555 (729)
Q Consensus 476 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 555 (729)
-+..+... .-+....+.-.......|++++|.+.+.+.+..+..-....|| +.-.+-..|++++|++.|-++...- .
T Consensus 479 ad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il-~ 555 (840)
T KOG2003|consen 479 ADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAIL-L 555 (840)
T ss_pred HHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHH-H
Confidence 66555431 1122222222334456788888888888887653221222222 3344567888999998887765432 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 556 PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALI 635 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 635 (729)
.+..++..+.+.|....+...|.+++.+.... ++.|+.+...|.+.|-+.|+-.+|.+++-.--.. ++-|..+...|.
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ 633 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLA 633 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHH
Confidence 36677778888888888999999998877665 5778889999999999999999998887665554 555788888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchh
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN-ENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYK 714 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~ 714 (729)
.-|....-+++|+.+|++..- +.|+..-|..++. ++.+.|++.+|+++|+... ...|....+..+|+.....-|.
T Consensus 634 ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h--rkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH--RKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCccchHHHHHHHHHhccccc
Confidence 888888888999999998865 6899999987765 4566899999999999987 4566666566665777777777
Q ss_pred hcHHHHHHHh
Q 004814 715 VHAVEYLESL 724 (729)
Q Consensus 715 ~~a~~~l~~l 724 (729)
.++.|+-.++
T Consensus 710 ~d~key~~kl 719 (840)
T KOG2003|consen 710 KDAKEYADKL 719 (840)
T ss_pred hhHHHHHHHH
Confidence 7776665554
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=2.6e-14 Score=150.20 Aligned_cols=570 Identities=14% Similarity=0.115 Sum_probs=369.9
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHH
Q 004814 98 NRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILD 177 (729)
Q Consensus 98 ~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 177 (729)
...+|+...|+.|+--+... -+.|..-|..+.......|++++|...+.++++.+|. +.+..-
T Consensus 183 yEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~---------------n~~~~~ 245 (895)
T KOG2076|consen 183 YEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS---------------NWELIY 245 (895)
T ss_pred HHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc---------------chHHHH
Confidence 34567888998877655432 2567799999999999999999999999999999887 456666
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH----HHHHHHHHCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHH
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN----RIIKVLRDNGFSVKAREVYRMMGEFG-IKPSIVTYNTMLDS 252 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ll~~l~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~ 252 (729)
.-...|-+.|+...|...|.++....+..|..-+. .++..+...++.+.|++.++.....+ -..+...+++++..
T Consensus 246 ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 246 ERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL 325 (895)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 77888999999999999999999976533333333 24556677788899999998887621 13456678999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH----------------------HH----HHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVT----------------------YN----VLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------------------~~----~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
+.+...++.|......+......+|..- |. -+.-++.+....+....+.....+
T Consensus 326 ~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~ 405 (895)
T KOG2076|consen 326 FLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVE 405 (895)
T ss_pred HHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHH
Confidence 9999999999999888876222222211 11 223344455556666666666666
Q ss_pred CC--CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 004814 307 LG--LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDII 384 (729)
Q Consensus 307 ~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 384 (729)
.. +.-++..|..+..+|...|++.+|+++|..+......-+...|--+..+|...|.+++|.+.|+..+...+ -+..
T Consensus 406 ~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p-~~~D 484 (895)
T KOG2076|consen 406 DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAP-DNLD 484 (895)
T ss_pred hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCC-Cchh
Confidence 65 44567789999999999999999999999999876666788999999999999999999999999998664 4566
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhh--------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC
Q 004814 385 SYNTLLYGYCRSGNIGEAFLLFDELRS--------RNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQG-----ILP 451 (729)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~l~~~m~~--------~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~~ 451 (729)
.-..|...+.+.|+.++|.+.+..+.. ....|+........+.+.+.|+.++-..+-..|+... +.|
T Consensus 485 ~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~ 564 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFP 564 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 667788889999999999999998642 2344555555566778888999888777777665321 001
Q ss_pred -----------------CHHHHHHHHHHHHhcCCHHHHHHHHHH------HHHCCCCCCH--hhHHHHHHHHHhcCCHHH
Q 004814 452 -----------------DVITYTIMVNGSCKMGNLSMAREFFNE------MLRKGLQPDR--FAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 452 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~------~~~~g~~~~~--~~~~~li~~~~~~g~~~~ 506 (729)
.......++.+-.+.++.....+-... ....|+..+. ..+..++.++++.+++++
T Consensus 565 ~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qe 644 (895)
T KOG2076|consen 565 RNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQE 644 (895)
T ss_pred hHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHH
Confidence 111111222222222221111111100 0001111111 123344555666666666
Q ss_pred HHHHHHHHHHCCCC-CCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--CC-CHHHHHHH-------------
Q 004814 507 AYRLQEEMLAKGFP-PDLI----TYNVLVHGLCKLGSLEEANELLRKMVGD-GF--IP-DHITYTSI------------- 564 (729)
Q Consensus 507 A~~l~~~~~~~~~~-~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~--~p-~~~~~~~l------------- 564 (729)
|..+...+.....- .+.. .-...+.+.+..+++..|...++.|+.. +. .| -...|+..
T Consensus 645 Al~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~ 724 (895)
T KOG2076|consen 645 ALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCY 724 (895)
T ss_pred HHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655544211 1111 1223344445556666666666655543 00 00 11122211
Q ss_pred ----------------------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHH----------cCCHHH
Q 004814 565 ----------------------IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYT-VLIHAHAA----------RGRLEL 611 (729)
Q Consensus 565 ----------------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~----------~g~~~~ 611 (729)
.+.....+.+..|+..+-.+.... ||....+ .++-++.. +-..-+
T Consensus 725 ~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~--pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~q 802 (895)
T KOG2076|consen 725 LRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN--PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQ 802 (895)
T ss_pred HHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 122344566778888777766653 5533333 33333321 122445
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHhcC
Q 004814 612 AFMYFSEMQVKGIR-PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN-------------KYTYTILINENCNAG 677 (729)
Q Consensus 612 A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~l~~~~~~~g 677 (729)
+..++.+..+.... -....+..++.+|-..|-+.-|..+|++..+.. +++ ...|| |.-.|..+|
T Consensus 803 G~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~-p~~~~~~~~d~~dLrkeAA~N-L~LIY~~SG 880 (895)
T KOG2076|consen 803 GFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS-PKDVTDPKEDNYDLRKEAAYN-LHLIYKKSG 880 (895)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC-ccccccccCCcccHHHHHHhh-hhhhhccCC
Confidence 66677666654221 145567788999999999999999999998742 111 12343 455789999
Q ss_pred CHHHHHHHHHHH
Q 004814 678 NWQEALRLYKEM 689 (729)
Q Consensus 678 ~~~~A~~~~~~m 689 (729)
+..-|.+++++-
T Consensus 881 n~~lArqil~ky 892 (895)
T KOG2076|consen 881 NMQLARQILEKY 892 (895)
T ss_pred cHHHHHHHHHhh
Confidence 999999998763
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=4e-15 Score=142.85 Aligned_cols=331 Identities=19% Similarity=0.272 Sum_probs=237.2
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH--HHHCCChh-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKV--LRDNGFSV-KAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--l~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
...|.+.++.-+|++|...|...+...-..++.. |....++- .-++.|-.|.+.| ..+..+| +.|.+.
T Consensus 126 IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vA 196 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVA 196 (625)
T ss_pred HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHH
Confidence 3578899999999999999887777665555543 33333333 2355666666655 3444455 345554
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 261 EALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
+ ++-+.. +-...+|.++|.++|+.-..+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|.
T Consensus 197 d---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMi 265 (625)
T KOG4422|consen 197 D---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMI 265 (625)
T ss_pred H---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHH
Confidence 4 333322 22567889999999999999999999999888777888999999987654322 278889999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH-HHHHHHHHh----h
Q 004814 341 TRGVAPTLATYNILIYGLCKWGRVSDA----RHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE-AFLLFDELR----S 411 (729)
Q Consensus 341 ~~g~~p~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~----~ 411 (729)
...+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..+|..+++.++..+ |..++.++. .
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 988999999999999999999987654 5677888888999999999999999998887644 444444332 2
Q ss_pred CCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 412 RNLVP----TVVTYNTLIDGLCRYGDLEVAQQLKENMINQG----ILPD---VITYTIMVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 412 ~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
+.+.| |...|...+..|.+..+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22333 44566777888888889999988877665321 2222 2345667778888889999999999998
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC 534 (729)
Q Consensus 481 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~ 534 (729)
-.-.-|+..+...++++..-.|.++-.-+++.++...|...+......++..++
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 887778888888888888888888888888888877764444333333333333
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.80 E-value=3.8e-13 Score=136.03 Aligned_cols=547 Identities=12% Similarity=0.070 Sum_probs=342.5
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHH
Q 004814 103 KPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLI 182 (729)
Q Consensus 103 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~ 182 (729)
.|+.|-.+...+.+. .++++..|......=.. ...=..++.++++.-|. +..+|-..+
T Consensus 330 p~d~aK~vvA~Avr~--~P~Sv~lW~kA~dLE~~---~~~K~RVlRKALe~iP~---------------sv~LWKaAV-- 387 (913)
T KOG0495|consen 330 PPDVAKTVVANAVRF--LPTSVRLWLKAADLESD---TKNKKRVLRKALEHIPR---------------SVRLWKAAV-- 387 (913)
T ss_pred ChHHHHHHHHHHHHh--CCCChhhhhhHHhhhhH---HHHHHHHHHHHHHhCCc---------------hHHHHHHHH--
Confidence 466777777666543 25677666655543322 12224566777776665 233333322
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
.....++|.-++.++.+.-+. +. -|..+|.+..-|+.|.++++...+. ++.+...|.+-...--.+|+.+..
T Consensus 388 --elE~~~darilL~rAveccp~-s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 388 --ELEEPEDARILLERAVECCPQ-SM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred --hccChHHHHHHHHHHHHhccc-hH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHH
Confidence 223344566666666664222 22 2334455555667777777766553 455666666666666666777766
Q ss_pred HHHHHHH----HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHHhCCCHHHHHHHH
Q 004814 263 LELLWEM----QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV--SAHSYNPIICGYSEKGLLVEALNLE 336 (729)
Q Consensus 263 ~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 336 (729)
.+++.+- ...|+..+...|..=...+-..|..--+..+....+..|+.- -..+|+.-...|.+.+.++-|..+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 6665543 345666666667666666767777777777766666655432 2356666777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCC
Q 004814 337 EEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVP 416 (729)
Q Consensus 337 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~ 416 (729)
...++- .+.+...|...+..--..|..++-..+|.+.+..-+ .....|......+-..|+...|..++.+.-+.+..
T Consensus 540 a~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 540 AHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred HHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 776664 223555666666665566777777777777766543 34455555566666677777777777776665422
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHH
Q 004814 417 TVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD-RFAYTTQI 495 (729)
Q Consensus 417 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~li 495 (729)
+...|...+.......+++.|..+|.+.... .|+..+|..-+...--.++.++|++++++.++. -|+ ...|..+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLG 692 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHh
Confidence 5566666666667777777777777776653 455566665555555667777777777777765 333 34555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 496 AGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLR 575 (729)
Q Consensus 496 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (729)
+.+.+.++++.|...|..-.+. +|..+..|-.+...--+.|++-+|..++++....++. +...|-..|..-.+.|+.+
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHH
Confidence 6677777777777776655544 3555666766766666777777777777777766543 6667777777777777777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
.|..++.++++. ++.+...|..-|....+.++-..+...+++. .-|+.....+...+....++++|.+-|.+.+
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Rav 844 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAV 844 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777665 3556666766666666555544444333332 3366666677777777777788888888777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 656 EEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 656 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
+.+ +.+-.+|..+...+.+.|.-++-.+++++.. ...|.
T Consensus 845 k~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~--~~EP~ 883 (913)
T KOG0495|consen 845 KKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCE--TAEPT 883 (913)
T ss_pred ccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHh--ccCCC
Confidence 753 3334567777777777777777777777776 44453
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.78 E-value=1.2e-13 Score=132.92 Aligned_cols=449 Identities=15% Similarity=0.165 Sum_probs=261.2
Q ss_pred hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCCHHH-HHHHHHHHHhCCCCCCHHHHHHH
Q 004814 208 VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK--EGEMQE-ALELLWEMQGRGCSPNGVTYNVL 284 (729)
Q Consensus 208 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~-A~~~~~~m~~~~~~p~~~~~~~l 284 (729)
+.+-|.++. +..+|.+.++.-+|+.|...|++.+...-..|...-|- +.++-- -.+.|-.|...|-. ...+|
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--- 190 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc---
Confidence 334455554 45667788888888888888877777666666554442 222221 13344445444322 33333
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 285 ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRV 364 (729)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 364 (729)
+.|++.+ ++-+. .+.+..++..+|.++|+-...+.|.+++++......+.+..++|.+|.+-.-
T Consensus 191 -----K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred -----ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 2333332 22222 2346677888888888888888888888887776666677777777765332
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHH----HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHH-HHH
Q 004814 365 SDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGE----AFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEV-AQQ 439 (729)
Q Consensus 365 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-A~~ 439 (729)
....+++.+|......||..|+|+++....+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 2226777778777777888888888888888886654 45677778888888888888888887777776643 444
Q ss_pred HHHHHHHC----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HhhHHHHHHHHHhcCCH
Q 004814 440 LKENMINQ----GI----LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKG----LQPD---RFAYTTQIAGELKLGDT 504 (729)
Q Consensus 440 ~~~~~~~~----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g----~~~~---~~~~~~li~~~~~~g~~ 504 (729)
++.++... .+ +.|...+...+..|.+..+.+-|.++...+.... +.|+ ..-|..+....++....
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~ 414 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI 414 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 44444431 11 2244556666667777777777766655444321 1111 12244455556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 505 SEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 505 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
+.-...++.|+-.-+-|+..+...++++..-.|.++-.-+++..++..|..-+.... ++++..+
T Consensus 415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~----------------eeil~~L 478 (625)
T KOG4422|consen 415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR----------------EEILMLL 478 (625)
T ss_pred HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH----------------HHHHHHH
Confidence 666666666666555566666666666666666666666666666555432222111 1222222
Q ss_pred HHCCCCCChhhHHHHHHHHHHc-CCHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---
Q 004814 585 LRKGLSPTLVTYTVLIHAHAAR-GRLELAFM-YFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI--- 659 (729)
Q Consensus 585 ~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~-~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--- 659 (729)
......|+...-.-+-....+. -++.++.+ .-.++... .......+.++-.+.+.|+.++|.+++.-..+++-
T Consensus 479 ~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 479 ARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 2222222222111111111110 11222221 12233333 33455667777788999999999999988866432
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004814 660 -LPNKYTYTILINENCNAGNWQEALRLYKEMLDREIE 695 (729)
Q Consensus 660 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 695 (729)
.|......-+.+.-...+....|...++-|...+..
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 222333446667777888899999999998755544
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=2.9e-13 Score=131.92 Aligned_cols=453 Identities=14% Similarity=0.122 Sum_probs=344.1
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
-+...|..-+.-=-..+.+..|.+++++++..+-. +..+|..-+.+=.++..+..|..++++++.
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r---------------~itLWlkYae~Emknk~vNhARNv~dRAvt 135 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYR---------------NITLWLKYAEFEMKNKQVNHARNVWDRAVT 135 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc---------------cchHHHHHHHHHHhhhhHhHHHHHHHHHHH
Confidence 45566666666666678888999999999887643 566788888888999999999999999998
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
.-+..|. .|...+.+=-..|++..|.++|++-.+. .|+..+|++.|+.-.+....+.|..+|++..- +.|++.+|
T Consensus 136 ~lPRVdq-lWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~w 210 (677)
T KOG1915|consen 136 ILPRVDQ-LWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNW 210 (677)
T ss_pred hcchHHH-HHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHH
Confidence 6544343 3445555666789999999999998876 79999999999999999999999999999887 47999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhC-C-CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 004814 282 NVLITGFSRNGELEQARGLIRDMLKL-G-LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT-LATYNILIYGL 358 (729)
Q Consensus 282 ~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~ 358 (729)
.-....=-+.|....|+.+|..+++. | -..+...+.+....-.++..++.|.-+|+-.++.=+... ...|..+...-
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 99888888999999999999998864 2 112334555555556677888889889888887522211 34555555554
Q ss_pred HhcCCH---HHHH-----HHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-------hhHHH
Q 004814 359 CKWGRV---SDAR-----HRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV-------VTYNT 423 (729)
Q Consensus 359 ~~~g~~---~~A~-----~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-------~~~~~ 423 (729)
-+.|+. ++++ --++.++..++ -|-.+|-..++.-...|+.+...++|++.... ++|-. ..|.-
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHH
Confidence 555653 3333 23455666665 78888989999888999999999999998875 45522 12211
Q ss_pred H---HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004814 424 L---IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNG----SCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIA 496 (729)
Q Consensus 424 l---l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 496 (729)
+ +-.-....+.+.+.++++..++. ++....|+..+--. ..++.++..|.+++...+ |..|...++...|.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHH
Confidence 1 11223568899999999999885 45555565554433 346788999999998877 45888999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHH
Q 004814 497 GELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGF-IPDHITYTSIIHASLEMGDLR 575 (729)
Q Consensus 497 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~ 575 (729)
.-.+.++++.+..+++..++-+ |.+..+|......-...|+.+.|..+|.-++.... .-....|.+.|+--...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 9999999999999999999986 77888999888888889999999999998887531 122346777777778899999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLIHA 602 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~~~ 602 (729)
.|..+++.++.. .+...+|..+..-
T Consensus 525 kaR~LYerlL~r--t~h~kvWisFA~f 549 (677)
T KOG1915|consen 525 KARALYERLLDR--TQHVKVWISFAKF 549 (677)
T ss_pred HHHHHHHHHHHh--cccchHHHhHHHH
Confidence 999999999986 3455567666543
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=2.8e-12 Score=125.13 Aligned_cols=438 Identities=12% Similarity=0.093 Sum_probs=273.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh-hhHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI-VTYNTML 250 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li 250 (729)
+...|..-++-=..+++++.|..+|++++.... .+...|...+.+=.+...+..|..++++.+..- |-+ ..|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~l--PRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL--PRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc--chHHHHHHHHH
Confidence 455555555556667788889999999988663 377778888888888889999999999888753 332 2455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHH
Q 004814 251 DSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLV 330 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 330 (729)
.+--..|++..|.++|++..+. .|+...|++.|..=.+.+..+.|+.++++.+-. .|++.+|.-....-.+.|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 5556678999999999998874 889999999999888889999999999988764 588888888888888899999
Q ss_pred HHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHH--
Q 004814 331 EALNLEEEMVTR-GV-APTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPD-IISYNTLLYGYCRSGNIGEAFLL-- 405 (729)
Q Consensus 331 ~A~~~~~~m~~~-g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l-- 405 (729)
-|..+|+...+. |- .-+...+.++...-.++..++.|.-+|.-.+..-+... ...|..+...--+-|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 999988887763 11 11233455555555566777888888877776533221 23344444433344543333222
Q ss_pred ------HHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH--------HHhcCCH
Q 004814 406 ------FDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDV--ITYTIMVNG--------SCKMGNL 469 (729)
Q Consensus 406 ------~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g~~ 469 (729)
|+.+.+.+ +-|-.+|-..++.-...|+.+...+++++++.. ++|-. ..|...|-. -....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 22333332 335556666666666677777777777777765 33321 111111111 1234566
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 470 SMAREFFNEMLRKGLQPDRFAYTTQI----AGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANEL 545 (729)
Q Consensus 470 ~~A~~~~~~~~~~g~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 545 (729)
+.+.++++..++. ++....|+..+- ....++.+...|.+++...+. ..|...++...|..-.+.++++....+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 6667777666663 222334443332 233355666666666655543 355666666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 546 LRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG-LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 546 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
+++.++-++. +..+|......-...|+.+.|..+|+-+++.. +......|-..|+--...|.++.|..+++++++.
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 6666665432 45555555555556666666666666665531 1111233444444444566666666666666654
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=1.4e-13 Score=133.08 Aligned_cols=457 Identities=13% Similarity=0.058 Sum_probs=282.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCccChh----hHHHHHHHHH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTY-NVLITGFSRNGELEQARGLIRDMLKLGLKVSAH----SYNPIICGYS 324 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~ 324 (729)
.+-|.-+....+|+..|+-+.+...-|+.... ..+.+.+.+...+.+|.+.++..+..-+..+.. ..+.+.-.+.
T Consensus 208 aqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 208 AQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEE
Confidence 34455556677777777777766555554432 234566777777777877777776653222222 3344444566
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH--------HHHHHHHHHc
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISY--------NTLLYGYCRS 396 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~li~~~~~~ 396 (729)
+.|++++|+..|+...+. .|+..+-..|+-++...|+-++..+.|..|+..-..||..-| ..|+.--.+.
T Consensus 288 q~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~n 365 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKN 365 (840)
T ss_pred ecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhh
Confidence 777777777777776664 356555444555555667777777777777765444443322 1122111111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHhcCCHH
Q 004814 397 GNIGEAFLLFDELRSRNLVPTVVTY----NTLIDGLCRYGDLEVAQQLKENMINQG-I-LPDVITYTIMVNGSCKMGNLS 470 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~~~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~ 470 (729)
+.++.|.+.+ ..+..-+ ..+|.- .-.-++....++.-+.++.. . +.-...--.-..-+.+.|+++
T Consensus 366 -------d~lk~~ek~~-ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 366 -------DHLKNMEKEN-KADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIE 436 (840)
T ss_pred -------HHHHHHHHhh-hhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHH
Confidence 1112222111 0000000 000000 00001111111111111100 0 000000011233578899999
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 471 MAREFFNEMLRKGLQPDRFAYTTQIAGELK--LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRK 548 (729)
Q Consensus 471 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 548 (729)
.|+++++-..++.-+.-....+.+-..+.- -.++..|...-+..+..+ .-+......-...-...|++++|.+.+++
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 999999988876433223333333322222 345666766666555432 22333322223334457899999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 549 MVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
.+.....- ...+-.+.-.+...|++++|+++|-++... +..+..+...+...|.-..+..+|++++.+.... ++.|+
T Consensus 516 al~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp 592 (840)
T KOG2003|consen 516 ALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP 592 (840)
T ss_pred HHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence 98753221 222333444577899999999999877543 2457778888899999999999999999998876 66688
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQ 708 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~ 708 (729)
.+...|.+.|-+.|+-.+|.+.+-+--.. ++-|..+...|..-|....-+++|+.+|+++. =++|+...|..+++.|
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHH
Confidence 89999999999999999999987665544 57788899999988999999999999999987 7899999999999999
Q ss_pred hccchhhc-HHHHHHHh
Q 004814 709 LDKDYKVH-AVEYLESL 724 (729)
Q Consensus 709 l~~~g~~~-a~~~l~~l 724 (729)
+++.|.++ |.+.++.+
T Consensus 670 ~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HHhcccHHHHHHHHHHH
Confidence 99999999 99887654
No 37
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=3.5e-12 Score=127.65 Aligned_cols=510 Identities=13% Similarity=0.038 Sum_probs=319.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
..-+..+++-+..+.++.-|.-+-+++...+..|+ .-..++.++.-.|++..|..+...-.-. ..|..+.......
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 34444555566677788888888888877664443 3445777888888888887776654322 3567777777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (729)
+.+..++++|..++.... +..+...|-.-= + ...-..+.+. ++.. .......+-.-...|......++|
T Consensus 92 l~~lk~~~~al~vl~~~~---~~~~~f~yy~~~-~-~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGH---VETNPFSYYEKD-A-ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHHHHHHHHhcccc---hhhcchhhcchh-h-hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHH
Confidence 888888888888876331 111111110000 0 0000001111 0000 000111111122334445556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNV----IPDIISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
...|.+.... |+..+..+...-. . .+-.+.+.++.+..... .-+......+.....-...-++....-.+
T Consensus 161 r~~Y~~Al~~----D~~c~Ea~~~lvs-~-~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~ 234 (611)
T KOG1173|consen 161 RDKYKEALLA----DAKCFEAFEKLVS-A-HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNED 234 (611)
T ss_pred HHHHHHHHhc----chhhHHHHHHHHH-H-HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCch
Confidence 6666666554 3333332221111 0 11112222222221110 01111111111111000000000000000
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 409 LRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR 488 (729)
Q Consensus 409 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 488 (729)
..-.+..-+........+-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.-+ ..+
T Consensus 235 ~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a 312 (611)
T KOG1173|consen 235 ESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKA 312 (611)
T ss_pred hhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCC
Confidence 1111223345555566667778889999999999988875 56667777777788888888877777777777632 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (729)
.+|-++.--|...|+.++|.+.|.+....+ +.-...|-.+...|+-.|..|+|...+..+-+.-.. ...-+--+.--|
T Consensus 313 ~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey 390 (611)
T KOG1173|consen 313 LSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEY 390 (611)
T ss_pred cchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHH
Confidence 788888888888899999999998877653 334567888899999999999999988877664211 111222344457
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcC
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK--GIR----PNVITYNALINGLCRLR 642 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~----p~~~~~~~l~~~~~~~g 642 (729)
.+.++.+.|.++|.+..... |.|+..++-+.-.....+.+.+|..+|+..+.. .+. --..+++.|+.+|.+.+
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence 88899999999999988774 778888998888888889999999999988732 011 13456889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhcc
Q 004814 643 RIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDK 711 (729)
Q Consensus 643 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~ 711 (729)
++++|+..+++.+... +.+..+|.+++-.|...|+++.|++.|.+.+ .++||......+|..++..
T Consensus 470 ~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred hHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 9999999999999873 7788899999999999999999999999999 9999998888886666654
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-11 Score=120.49 Aligned_cols=362 Identities=15% Similarity=0.059 Sum_probs=242.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
+...|...+-.....+.+.|....|+..|...+..-+ -....|..|..... +.+.+. .... +.+.|.....
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~lit---~~e~~~----~l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSELIT---DIEILS----ILVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHhhc---hHHHHH----HHHh-cCcccchHHH
Confidence 3444665555556667778888888888888776433 34444444443322 222221 1111 1222221111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHH
Q 004814 423 --TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ--PDRFAYTTQIAGE 498 (729)
Q Consensus 423 --~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--~~~~~~~~li~~~ 498 (729)
.+..++-...+.+++.+-.......|++.+...-+....+.....++++|+.+|+++.+..+- -|..+|+.++ |
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Y 307 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--Y 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--H
Confidence 234455666677888888888888887766666666666677788889999999888886211 1345555554 2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 499 LKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGR 578 (729)
Q Consensus 499 ~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 578 (729)
.+..+.. +..+.+-.-.-.+-.+.|...+.+-|+-.++.++|...|++.++.++. ....|+.+.+-|....+...|.
T Consensus 308 v~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 308 VKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHH
Confidence 2222211 122221111111334567777778888888888999999988887533 5567888888888888899999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 579 DLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
+-++.+++.+ |.|-..|-.|+++|.-.+...-|+-+|+++.+.. +-|...|.+|+.+|.+.++.++|++.|......|
T Consensus 385 ~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 385 ESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9998888875 6788888889999998888888999998888852 2367788899999999999999999998888876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHhhhccchhhc-HHHHH
Q 004814 659 ILPNKYTYTILINENCNAGNWQEALRLYKEMLDR----E-IEPDYCTHSALLLKQLDKDYKVH-AVEYL 721 (729)
Q Consensus 659 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~-~~pd~~~~~~ll~~~l~~~g~~~-a~~~l 721 (729)
..+...+..|++.|.+.++.++|.+.|++-++. | +.|...-....|+....+.++.+ |-.+.
T Consensus 463 -dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 -DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred -ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 445678888888888899999998888887742 2 33434445555566777777776 54433
No 39
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.64 E-value=2.6e-09 Score=108.66 Aligned_cols=525 Identities=13% Similarity=0.149 Sum_probs=343.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.|-.-+..+.++|+.-.-+..|++++..-|- .-..++|+..+.-....|..+-++.++++.++..
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-------------tqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-- 168 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPV-------------TQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-- 168 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCch-------------HhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC--
Confidence 3444444555566666666666665543221 1135688888888888899999999999999853
Q ss_pred CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCC
Q 004814 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG------IKPSIVTYNTMLDSFCKEGEMQ---EALELLWEMQGRGCSP 276 (729)
Q Consensus 206 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p 276 (729)
+..-+-.+..+++.+++++|.+.+...+... .+.+-..|..+-+...+.-+.- ....+++.+..+ -+
T Consensus 169 --P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ft 244 (835)
T KOG2047|consen 169 --PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FT 244 (835)
T ss_pred --HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--Cc
Confidence 3345677888999999999999998876431 1455566777666666543322 233455555544 33
Q ss_pred C--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC----------------------HHHH
Q 004814 277 N--GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL----------------------LVEA 332 (729)
Q Consensus 277 ~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~A 332 (729)
| ...|.+|..-|.+.|.+++|..+|++.++. ..++.-|..+.+.|+.-.. ++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 4 347899999999999999999999998875 2355566777777653221 1122
Q ss_pred HHHHHHHHHCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC----CCHhHHHHHHHHHHHc
Q 004814 333 LNLEEEMVTRGV-----------APTLATYNILIYGLCKWGRVSDARHRFFEMLRKN-VI----PDIISYNTLLYGYCRS 396 (729)
Q Consensus 333 ~~~~~~m~~~g~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~----~~~~~~~~li~~~~~~ 396 (729)
+.-|+.+..+++ .-++..|..-+. +..|+..+-...+.+.+..- +. .-...|..+.+.|-..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhc
Confidence 233333333211 112333333222 23566777778888877641 11 1134578889999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------CCHHHH
Q 004814 397 GNIGEAFLLFDELRSRNLVPT---VVTYNTLIDGLCRYGDLEVAQQLKENMINQGIL-----------------PDVITY 456 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-----------------~~~~~~ 456 (729)
|+++.|..+|++..+-+.+-- ..+|.....+-.+..+++.|.++.+......-. .+...|
T Consensus 401 ~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred CcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 999999999999877653322 234555556666778889999988877642111 134566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh
Q 004814 457 TIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL-ITYNVLVHGLCK 535 (729)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~ 535 (729)
...++..-..|-++....+|+++++..+. ++.........+....-++++.++++.-+..--.|+. ..|+..+.-+.+
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ 559 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIK 559 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHH
Confidence 77777777788999999999999987554 4444444444555667788999988876655334443 467776665544
Q ss_pred ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCC
Q 004814 536 ---LGSLEEANELLRKMVGDGFIPDHITYTSI--IHASLEMGDLRRGRDLFNNMLRKGLSPT--LVTYTVLIHAHAARGR 608 (729)
Q Consensus 536 ---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 608 (729)
...++.|..+|++.++ |.+|...-+-.| ...--+.|-...|+.+++++... +++. ...||..|.--...=-
T Consensus 560 rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG 637 (835)
T KOG2047|consen 560 RYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG 637 (835)
T ss_pred HhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC
Confidence 3468999999999998 555554322222 22234568899999999997765 2332 4477777765444434
Q ss_pred HHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCC
Q 004814 609 LELAFMYFSEMQVKGIRPNVIT---YNALINGLCRLRRIDQAYGLFIDMEEE-GILPNKYTYTILINENCNAGN 678 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~ 678 (729)
+.....+|+++++. -||... .-...+.-++.|.++.|..++.-..+. +...+...|.+.=.--.+.|+
T Consensus 638 v~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 638 VPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred CcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 55667788888875 455443 334455678899999999999887764 223355678888777788998
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=2e-12 Score=126.85 Aligned_cols=222 Identities=15% Similarity=0.118 Sum_probs=164.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 464 CKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEAN 543 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 543 (729)
.-.|+.-.|.+-|+..++....++. .|..+...|.+..+.++....|+...+.+ |.++.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 3467788888888888876443222 26666677888888888888888888875 667777777777777788899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004814 544 ELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKG 623 (729)
Q Consensus 544 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 623 (729)
.=|++.++..+. +...|..+.-+..+.+.+++++..|++..++ +|.-+..|+.....+..+++++.|.+.|+..++..
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999888876432 5556666666677888899999999988876 46667888888889999999999999999888752
Q ss_pred CC-----CCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 624 IR-----PNVI--TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 624 ~~-----p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.. .+.. +--.++.. .-.+++..|..+++++.+.+ +-....|.+|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 1111 11222222 23478889999999988854 33455788888888999999999999998763
No 41
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=6.6e-11 Score=115.71 Aligned_cols=257 Identities=12% Similarity=0.053 Sum_probs=130.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCC
Q 004814 356 YGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLV--PTVVTYNTLIDGLCRYGD 433 (729)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~--~~~~~~~~ll~~~~~~g~ 433 (729)
.++....+.+++.+-.+.....|...+...-+....+.-...++++|+.+|+++.+...- -|..+|+.++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 444444555666666666666555333333333344444556666666666666554210 134455544432211111
Q ss_pred HH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 434 LE-VAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQE 512 (729)
Q Consensus 434 ~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 512 (729)
+. .|..++ +.+ +--+.|...+.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|+..++
T Consensus 315 Ls~LA~~v~----~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 LSYLAQNVS----NID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHH----Hhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11 111111 110 222345555555566666666666666666655322 23444555555555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 513 EMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT 592 (729)
Q Consensus 513 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 592 (729)
..++-+ |.|-..|-.+.++|.-.+.+.=|+-.|++.....+ .|...|.+|..+|.+.++.++|.+.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 555543 44555555555555555555555555555555432 255555555555555555555555555555544 233
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
...+..|.+.|-+.++..+|...|++-++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 45555555555555555555555555443
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=5.7e-12 Score=131.67 Aligned_cols=251 Identities=12% Similarity=0.023 Sum_probs=148.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDVITY--TIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 506 (729)
.+.|+++.|.+.+.++.+. .|+.... ......+...|+++.|...++++.+..+. ++.....+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555555443 2222211 12234455555555555555555554322 34444455555555555555
Q ss_pred HHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDL-------ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRD 579 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 579 (729)
|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 55555555554322111 12222232223333445555555554332 23466677777777888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004814 580 LFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI 659 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 659 (729)
++++..+. +++.... ++.+....++.+++++..++..+.. +-|+..+..++..|.+.|++++|.+.|+++.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88777764 4554222 2334445578888888888877763 235566777888888888888888888888773
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 660 LPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 660 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.|+...+..+..++.+.|+.++|.++|++.+
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6777777788888888888888888888776
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.63 E-value=4.4e-12 Score=133.30 Aligned_cols=290 Identities=12% Similarity=0.019 Sum_probs=166.2
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPT-VVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAR 473 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (729)
..|+++.|.+.+.+..+.. |+ ...+-....+....|+.+.|.+.+.+..+....+...........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3556666666655544432 22 22223334445555666666666666554321111222333355555566666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHH
Q 004814 474 EFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL---VHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 474 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~ 550 (729)
..++.+.+..+. +......+...+.+.|++++|.+++..+.+.+..+.......- ..+....+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 666666655322 3445555556666666666666666666655432222111111 111122222233334444444
Q ss_pred hCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004814 551 GDGFI---PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVT---YTVLIHAHAARGRLELAFMYFSEMQVKGI 624 (729)
Q Consensus 551 ~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 624 (729)
+..+. .+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+..
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 43221 266777777788888888888888888887763 33321 1122222334567788888888877752
Q ss_pred CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 625 RPNV--ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 625 ~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+-|+ ....++++.+.+.|++++|.+.|++.......|+...+..+...+.+.|+.++|.++|++.+
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2244 55668888888888898898888854433357888888888888888888888888888865
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.62 E-value=3.8e-12 Score=133.80 Aligned_cols=290 Identities=12% Similarity=0.048 Sum_probs=172.0
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI--VTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~ 261 (729)
...|+++.|.+.+.+..+..+. ....+-....+..+.|+++.|.+.+.+..+.. |+. .........+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 3456667777776666655422 12223334455666677777777777665542 332 233334566666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHH----HHHHHHHhCCCHHHHHHHHH
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYN----PIICGYSEKGLLVEALNLEE 337 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~ 337 (729)
|...++++.+.. +-+...+..+...+.+.|++++|.+++..+.+.+.. +...+. .........+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777776653 224455666667777777777777777777766533 222221 11111122233333334444
Q ss_pred HHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 338 EMVTRGVA---PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS---YNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 338 ~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
.+.+..+. .+...+..++..+...|+.++|.+++++..+..+ |... ...........++.+++.+.++...+
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 44443221 2667777777778888888888888888777553 3221 11122222345667777777777666
Q ss_pred CCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 412 RNLVPTV--VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 412 ~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
.. +-|. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 2233 455677778888888888888888533333367777777888888888888888888887654
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=2.9e-12 Score=133.82 Aligned_cols=252 Identities=11% Similarity=0.088 Sum_probs=155.7
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 394 CRSGNIGEAFLLFDELRSRNLVPTVVTYN--TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSM 471 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (729)
.+.|+++.|.+.+.++.+.. |+...+. .....+...|+++.|...++++.+.. +.+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 45555555555555554432 2222111 22344455555555555555555543 3344555555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 472 AREFFNEMLRKGLQPDRF-------AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANE 544 (729)
Q Consensus 472 A~~~~~~~~~~g~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 544 (729)
|.+++..+.+.+..++.. ++..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555544332111 1122222222333444445555544332 35577777888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 004814 545 LLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGI 624 (729)
Q Consensus 545 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 624 (729)
++++..+. .|+.... ++.+....++.+++.+..+...+.. +.|...+..+...+.+.|++++|.+.|+++.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~-- 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ-- 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 88888874 3444222 2333445588888888888888764 556777888888888888888888888888874
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 625 RPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.|+...+..+..++.+.|+.++|.+++++...
T Consensus 358 ~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 358 RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 68888888888888888888888888887754
No 46
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.61 E-value=1.8e-10 Score=117.37 Aligned_cols=453 Identities=16% Similarity=0.139 Sum_probs=304.9
Q ss_pred HhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 135 IESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
...+.++....+.+.+++..|.- .......+-.+...|+-++|....+..++..+. +.+.|..+
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eH---------------geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~ 81 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEH---------------GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVL 81 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCcc---------------chhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHH
Confidence 45677888888888888876652 223333444456788999999999998887665 77889888
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 004814 215 IKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGEL 294 (729)
Q Consensus 215 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 294 (729)
.-.+....++++|++.|+.+...+ +.|...|.-+.-...+.|+++.....-.+..+. .+.....|...+.++.-.|+.
T Consensus 82 gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 82 GLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999987 778888888877778888998888777777665 233566788889999999999
Q ss_pred HHHHHHHHHHHhCC-CccChhhHHHHH------HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 295 EQARGLIRDMLKLG-LKVSAHSYNPII------CGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367 (729)
Q Consensus 295 ~~A~~~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 367 (729)
..|..++++..+.. -.|+...+.... ....+.|.+++|++.+..-... +.-....-..-...+.+.+++++|
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA 238 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEA 238 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhH
Confidence 99999999998764 245555554433 3445778888898887765543 221222334456778899999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHH-HHHcCCHHHHH-HHHHHHhhCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 368 RHRFFEMLRKNVIPDIISYNTLLYG-YCRSGNIGEAF-LLFDELRSRN---LVPTVVTYNTLIDGLCRYGDLEVAQQLKE 442 (729)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~-~l~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 442 (729)
..++..++..+ ||...|+..... +.+-.+.-+++ .+|....+.- -.|-....+ ......-.+..-.++.
T Consensus 239 ~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpls----vl~~eel~~~vdkyL~ 312 (700)
T KOG1156|consen 239 VKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLS----VLNGEELKEIVDKYLR 312 (700)
T ss_pred HHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHH----HhCcchhHHHHHHHHH
Confidence 99999999977 677766655544 43444444454 6666554431 111111111 1111222345556677
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCCHh--hHHHHHHHHHhcCCHHH
Q 004814 443 NMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR----KG----------LQPDRF--AYTTQIAGELKLGDTSE 506 (729)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g----------~~~~~~--~~~~li~~~~~~g~~~~ 506 (729)
.+.+.|+++ ++..+...|-.-...+-..++.-.+.. .| -.|... ++..++..+-+.|+++.
T Consensus 313 ~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 313 PLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred HHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 777887654 333333333222222211111111111 11 133433 34456678889999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPD-LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
|...++..+.+ .|. +..|..-.+.+...|.+++|..++++..+.. .+|...-..-..-..+..+.++|.++.....
T Consensus 390 A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 390 ALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 99999998876 444 5567677788999999999999999998875 4566655567777788999999999998888
Q ss_pred HCCCCCChh--------hHHHH--HHHHHHcCCHHHHHHHHHHHH
Q 004814 586 RKGLSPTLV--------TYTVL--IHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 586 ~~~~~~~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~~~ 620 (729)
+.|. +.. +|-.+ +.+|.++|++.+|++-|..+.
T Consensus 467 r~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 467 REGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 7763 222 23222 356778888888877665544
No 47
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.60 E-value=4.8e-15 Score=147.95 Aligned_cols=258 Identities=18% Similarity=0.163 Sum_probs=62.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQG-ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGD 503 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 503 (729)
...+.+.|++++|.++++...... .+.+...|..+.......++.+.|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 344444455555555543332221 1223333333333444445555555555555443222 22233333333 34444
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 504 TSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG-FIPDHITYTSIIHASLEMGDLRRGRDLFN 582 (729)
Q Consensus 504 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (729)
+++|.++++...+. .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444444443332 2233344444444455555555555555443321 12334444444455555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004814 583 NMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN 662 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (729)
+.++.. |.|....+.++..+...|+.+++.++++...+.. +.|+..+..++.+|...|+.++|+..+++..+.. +.|
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 555442 2234444455555555555555444444444331 2233344455555555555555555555554432 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 663 KYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+.....+++++...|+.++|.++++++
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 444455555555555555555554444
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=6.2e-11 Score=116.55 Aligned_cols=356 Identities=13% Similarity=-0.018 Sum_probs=175.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD-VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
+-...+-|.++|++++|++.|.++++.. || +.-|.....+|...|++++..+...+.++.+ +.-+-.+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHH
Confidence 3456677889999999999999999864 66 6778888999999999999999998888764 223446666677777
Q ss_pred hcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CC--CccChhhHHHHHHHHHhCCCHH
Q 004814 255 KEGEMQEALELLWEMQGR-GCSPNGVTYNVLITGFSRNGELEQARGLIRDMLK-LG--LKVSAHSYNPIICGYSEKGLLV 330 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~~~~~li~~~~~~g~~~ 330 (729)
+.|++++|+.=.....-. |+. |..+--.+=+.+- ..|.....+-.+ .+ +-|+.....+....+...-
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~--- 265 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP--- 265 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc---
Confidence 788888876433222111 111 1111110001111 111222222222 22 1233322222222221100
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC---CCCC---C------HhHHHHHHHHHHHcC
Q 004814 331 EALNLEEEMVTRGVAPTLATYNILIYGLCK-WGRVSDARHRFFEMLRK---NVIP---D------IISYNTLLYGYCRSG 397 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~~---~------~~~~~~li~~~~~~g 397 (729)
...+...+...|...-..+-..+.. ...+..|.+.+.+-... .... | ..+.......+.-.|
T Consensus 266 -----~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 266 -----KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred -----cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 0000000000000000000000000 01122332222221110 0000 1 111111122233355
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFN 477 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (729)
+...|..-|+........++ ..|..+..+|....+.++..+.|++..+.+ +.++.+|..-...+.-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666655432221 225555556666666666666666666654 3355555555555555666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 478 EMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD 552 (729)
Q Consensus 478 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 552 (729)
+.+..... +...|..+.-+..+.+.++++...|++..++ +|..+..|+.....+...++++.|.+.|+..++.
T Consensus 419 Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 419 KAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 66654211 2333444444445566666666666666554 4555666666666666666666666666665553
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.59 E-value=1.2e-08 Score=104.14 Aligned_cols=491 Identities=13% Similarity=0.118 Sum_probs=233.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL-LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+++|..-.+...++|++..-..+|++++..=+ .-....|...+......+-.+-+..+|++.++. ++..-+-.|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 44555555555566666666666666554321 123334555555555556566666666665543 2223444455
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCccChhhHHHHHHH
Q 004814 252 SFCKEGEMQEALELLWEMQGRG------CSPNGVTYNVLITGFSRNGELE---QARGLIRDMLKLGLKVSAHSYNPIICG 322 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~ 322 (729)
.+++.++.++|.+.+....... .+.+...|.-+-....+..+.- ....+++.++..=...--..|.+|..-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 5556666666665555543221 1223333444444333332211 112222222221111112345555555
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCCHhHHHHHHHHHHHcCCHH
Q 004814 323 YSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEML--RKNVIPDIISYNTLLYGYCRSGNIG 400 (729)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~li~~~~~~g~~~ 400 (729)
|.+.|.++.|.++|++.... ..++.-++.+.+.|.......-+..+= +. +.+-..+.. +++
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me--~a~~~~~n~ed~~-------------dl~ 320 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME--LADEESGNEEDDV-------------DLE 320 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh--hhhhcccChhhhh-------------hHH
Confidence 55555555555555555442 113333444444444322211111110 00 001101111 122
Q ss_pred HHHHHHHHHhhCC-----------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHH
Q 004814 401 EAFLLFDELRSRN-----------LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILP------DVITYTIMVNGS 463 (729)
Q Consensus 401 ~A~~l~~~m~~~~-----------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~ 463 (729)
-.+.-|+.+.... -+-++..|..- .-+..|+..+-...+.++++. +.| -...|..+...|
T Consensus 321 ~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklY 397 (835)
T KOG2047|consen 321 LHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLY 397 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHH
Confidence 2223333332221 01122222222 223345666667777777654 122 234677777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CC------CH
Q 004814 464 CKMGNLSMAREFFNEMLRKGLQPD---RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGF-----------PP------DL 523 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-----------~~------~~ 523 (729)
-..|+.+.|..+|++..+...+-- ..+|..-...-.+..+++.|+++++.....-- ++ +.
T Consensus 398 e~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSl 477 (835)
T KOG2047|consen 398 ENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSL 477 (835)
T ss_pred HhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhH
Confidence 888888888888888776533211 23444445555677778888887776644210 11 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHH
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL-VTYTVLIHA 602 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~ 602 (729)
..|..+++..-..|-++....++++++...+. ++........-+-.+.-++++.+++++-+..-..|+. ..|+..+.-
T Consensus 478 kiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtk 556 (835)
T KOG2047|consen 478 KIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTK 556 (835)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHH
Confidence 34555566656667777777778777766543 3332222233344455566677776655544223332 355555544
Q ss_pred HHH---cCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHh
Q 004814 603 HAA---RGRLELAFMYFSEMQVKGIRPNVI--TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK--YTYTILINENCN 675 (729)
Q Consensus 603 ~~~---~g~~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~ 675 (729)
+.+ ..+++.|..+|+++++ |.+|... .|......--+.|....|+.+++++... +++.. ..|+..|.--..
T Consensus 557 fi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae 634 (835)
T KOG2047|consen 557 FIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAE 634 (835)
T ss_pred HHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHH
Confidence 443 2356777777777776 4555432 2222222233456666677777665442 33322 244444432222
Q ss_pred cCCHHHHHHHHHHHH
Q 004814 676 AGNWQEALRLYKEML 690 (729)
Q Consensus 676 ~g~~~~A~~~~~~m~ 690 (729)
.=-....+.+|++++
T Consensus 635 ~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 635 IYGVPRTREIYEKAI 649 (835)
T ss_pred HhCCcccHHHHHHHH
Confidence 222233345555555
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=8.4e-15 Score=146.21 Aligned_cols=258 Identities=18% Similarity=0.160 Sum_probs=116.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 458 IMVNGSCKMGNLSMAREFFNEMLRKG-LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL 536 (729)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 536 (729)
.+...+.+.|++++|++++++..... ...+...+..+.......++.++|...++.+...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 56788899999999999997665553 23344555556667788999999999999998875 3356667777777 788
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 004814 537 GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK-GLSPTLVTYTVLIHAHAARGRLELAFMY 615 (729)
Q Consensus 537 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 615 (729)
+++++|.+++.+..+.. ++...+..++..+.+.++++++.++++.+... ..+.+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998877653 56677888889999999999999999998754 2356788899999999999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 616 FSEMQVKGIRP-NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREI 694 (729)
Q Consensus 616 ~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 694 (729)
++++.+. .| |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|+..+++.. ..
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~--~~ 243 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL--KL 243 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH--HH
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc--cc
Confidence 9999996 45 57788899999999999999999999988763 6677788999999999999999999999998 67
Q ss_pred CCCHHHHHHHHHhhhccchhhc-HHHHHHHh
Q 004814 695 EPDYCTHSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 695 ~pd~~~~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
.|+.+.+...++++|...|+.+ |.++.++.
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp STT-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 8877777777799999999999 88877654
No 51
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.58 E-value=4.2e-13 Score=137.10 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=178.8
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQG--ILPDVITYTIMVNGSCKMGNLSMAREF 475 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (729)
+..+|+..|..+... +.-...+...+..+|...+++++|+++|+.+.+.. ...+...|.+.+-.+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 456777777774443 23334555667777777777777777777776652 12355666666643321 222332
Q ss_pred H-HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004814 476 F-NEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGF 554 (729)
Q Consensus 476 ~-~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 554 (729)
+ +.+.+. -+-.+.+|.++..+|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2 233332 12356677777777777777777777777777653 33566677666666667777777777777765421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 555 IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNAL 634 (729)
Q Consensus 555 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 634 (729)
. +-..|-.+.-.|.+.++++.|+-.|+++.+.+ |.+.+....++..+-+.|+.++|+++++++.....+ |+..--..
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 1 23344455666777777777777777777765 556666666777777777777777777777765332 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 635 INGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 635 ~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
+..+...+++++|+..++++++. ++.+...|..++..|.+.|+.+.|+..|--|. .++|
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~--~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWAL--DLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHh--cCCC
Confidence 55566667777777777777764 23344566667777777777777777777666 4444
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.2e-10 Score=116.76 Aligned_cols=276 Identities=13% Similarity=0.064 Sum_probs=127.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 388 TLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMG 467 (729)
Q Consensus 388 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (729)
.-.+-+...+++.+..++.+++.+.. ++....+..-|.++...|+..+-..+=.++.+. .|....+|-++.-.|...|
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~ 326 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIG 326 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhc
Confidence 33344444445555555555444432 233333333344444444444444444444443 2334445555554444455
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 468 NLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLR 547 (729)
Q Consensus 468 ~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 547 (729)
+..+|.+.|.+....... =...|......|.-.|..|+|+..+....+. ++....-+--+.--|.+.++.+.|.+.|.
T Consensus 327 k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~ 404 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFK 404 (611)
T ss_pred CcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHH
Confidence 555555555444432111 1234444444555555555555554444332 11111111122233444555555555555
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 548 KMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----G--LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 548 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
++....+ .|+..++-+.-.....+.+.+|...|+..+.. + ..--..+++.|+.+|.+.+++++|+..+++.+.
T Consensus 405 ~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~ 483 (611)
T KOG1173|consen 405 QALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL 483 (611)
T ss_pred HHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5554432 24444555544444555555555555544421 0 001123455555556666666666666666555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 622 KGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 622 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
.. +-+..++.+++-.|...|+++.|++.|.+... +.|+..+...++.
T Consensus 484 l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 484 LS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred cC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 42 22555555555556666666666666665554 3455444444433
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=8.1e-13 Score=135.04 Aligned_cols=282 Identities=12% Similarity=0.048 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHH-
Q 004814 190 EQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI--KPSIVTYNTMLDSFCKEGEMQEALELL- 266 (729)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~- 266 (729)
++|+..|++....-.. .......+..+|...+++++|.++|+.+.+... -.+..+|.+.+..+-+ +-++..+
T Consensus 336 ~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 4555555554433211 112233345555555555555555555544310 1234455555444321 1112221
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 004814 267 WEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP 346 (729)
Q Consensus 267 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 346 (729)
+.+.+. -+-.+.+|-++.+.|.-+++.+.|++.|++.++.+ +...++|+.+..-+.....+|.|...|+..+...+.
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r- 487 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR- 487 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-
Confidence 111111 12234556666666666666666666666555543 124555555555555556666666666555543111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
+-..|--+.-.|.+.++++.|.-.|+...+.++ .+.+....+...+.+.|+.|+|++++++....+.. |+..--.-+.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~ 565 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRAS 565 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHH
Confidence 222333344555666666666666666655554 34445555555566666666666666665554322 3322223344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
.+...++.++|...++++.+. .+.+..++..+...|.+.|+.+.|+.-|.-+.+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 455556666666666666554 2334555556666666666666666666665554
No 54
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.7e-10 Score=106.58 Aligned_cols=495 Identities=11% Similarity=0.058 Sum_probs=295.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
.-..++..|+.+++--...+-.-...+-..+..++.+.|++++|..+|..+.+.. .++...+.-|.-.+.-.|.+.+|.
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHH
Confidence 3456677777777766544332222223346667788899999999988877654 556666666666666778888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 004814 264 ELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRG 343 (729)
Q Consensus 264 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (729)
.+-....+ +.-.-..|+..--+.++-++-..+...+.+. ..--.+|.......-.+.+|++++......+
T Consensus 112 ~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 112 SIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77655432 3444455666666778877777766665432 1223345555555567888999998888753
Q ss_pred CCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 344 VAPTLATYNI-LIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 344 ~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
|+-...|. +.-+|.+..-++-+.++++-.+..-+ .+....|.......+.=.-..|.+-.+++.+.+-.. |
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~p-dStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~- 253 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFP-DSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y- 253 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCC-CcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-
Confidence 23333332 34566777778888888877766432 344555555544444333333444444444432111 1
Q ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 004814 423 TLIDGLCRY-----GDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAG 497 (729)
Q Consensus 423 ~ll~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~ 497 (729)
..+.-+++. ..-+.|.+++-.+.+. -|. .-..|+-.|.+++++++|..+.+++... .|-......+..+
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~a 327 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFA 327 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHH
Confidence 223334443 3447788887777654 233 3345566688999999999888766432 2222222222211
Q ss_pred -----HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 004814 498 -----ELKLGDTSEAYRLQEEMLAKGFPPDL-ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEM 571 (729)
Q Consensus 498 -----~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 571 (729)
........-|.+.|+-+-..+..-|. ..-.++...+.-..++++.+..+..+..--...|...+ .+..+++..
T Consensus 328 alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~at 406 (557)
T KOG3785|consen 328 ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLAT 406 (557)
T ss_pred HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHh
Confidence 11222345566666555444433332 23445666666677899999888888776544444444 477889999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 004814 572 GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVIT-YNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 572 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~ 650 (729)
|.+.+|.++|-.+....++.+..-...|..+|.++++++.|..++-++.. +.+..+ ...+..-|.+++.+=-|-+.
T Consensus 407 gny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKA 483 (557)
T KOG3785|consen 407 GNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKA 483 (557)
T ss_pred cChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999997776554443343445566788999999988777655542 223333 34455678889998888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHhhhccchhhcHHH
Q 004814 651 FIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC-THSALLLKQLDKDYKVHAVE 719 (729)
Q Consensus 651 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~-~~~~ll~~~l~~~g~~~a~~ 719 (729)
|+.+... .|++.-|. |+--....+|..+..+.-.|-+. +.+.+ +..+...+..++.-
T Consensus 484 Fd~lE~l--DP~pEnWe---------GKRGACaG~f~~l~~~~~~~~p~~~~rEV-vhllr~~~nsq~E~ 541 (557)
T KOG3785|consen 484 FDELEIL--DPTPENWE---------GKRGACAGLFRQLANHKTDPIPISQMREV-VHLLRMKPNSQCEF 541 (557)
T ss_pred hhHHHcc--CCCccccC---------CccchHHHHHHHHHcCCCCCCchhHHHHH-HHHHHhCCCchHHH
Confidence 8887764 57766663 33333445566665444444332 33334 55566555555433
No 55
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.56 E-value=1.2e-09 Score=111.56 Aligned_cols=423 Identities=16% Similarity=0.129 Sum_probs=203.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHH
Q 004814 256 EGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNL 335 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (729)
.+++...+++.+.+.+. .+-...|.....-.++..|+-++|....+..++.++. +.+.|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 35555555555555553 2333344444444455556666666666555554322 455566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC-C
Q 004814 336 EEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN-L 414 (729)
Q Consensus 336 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~ 414 (729)
|......+.. |...+.-+.-.-.+.|+++.....-....+..+ .....|..++.++.-.|+...|..++++..+.. -
T Consensus 98 y~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666654433 455555555555555666555555555554332 334456666666666666666666666655433 2
Q ss_pred CCCHhhHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 415 VPTVVTYNTLI------DGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR 488 (729)
Q Consensus 415 ~~~~~~~~~ll------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~ 488 (729)
.|+...|.... ....+.|..+.|.+.+..-... +......-..-...+.+.+++++|..++..++.. .||.
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn 252 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDN 252 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cchh
Confidence 34444333222 2234455556666555544332 1112222233444556666677777777666665 4555
Q ss_pred hhHHHHHH-HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 489 FAYTTQIA-GELKLGDTSEAY-RLQEEMLAKGFPPDLITYNVL-VHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII 565 (729)
Q Consensus 489 ~~~~~li~-~~~~~g~~~~A~-~l~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 565 (729)
..|..... ++.+-.+.-++. .+|....+. .|-...-..+ ++......-.+..-+++..+++.|+++- +..+.
T Consensus 253 ~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~ 327 (700)
T KOG1156|consen 253 LDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLR 327 (700)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhH
Confidence 54444332 332333333333 444443332 1111111111 1111111223333445555555554422 22222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC--C------------CCCChhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRK--G------------LSPTLVTY--TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI 629 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~--~------------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 629 (729)
..|-.-...+--.++.-.+... | -+|....| ..++..|-+.|+++.|..+++.++.+ .|+.+
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHH
Confidence 2221111111111111111110 0 03443333 33455566667777777777666654 34322
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 630 -TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDRE 693 (729)
Q Consensus 630 -~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 693 (729)
.|..-...+...|++++|...+++..+.+ .+|...-..-+.-..++++.++|.++.......|
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 44444566666677777777776666654 4444433344444556666677766666666444
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=4.5e-11 Score=111.62 Aligned_cols=290 Identities=16% Similarity=0.154 Sum_probs=199.9
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHH
Q 004814 396 SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILP---DVITYTIMVNGSCKMGNLSMA 472 (729)
Q Consensus 396 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 472 (729)
..+.++|.++|-+|.+.. +.+..+--+|.+.|.+.|..+.|+++.+.+.+..--+ .......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345666777776666632 2234445566666777777777777777666541111 122344556667777888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 473 REFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPD----LITYNVLVHGLCKLGSLEEANELLRK 548 (729)
Q Consensus 473 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~ 548 (729)
+.+|..+.+.|. .-......++..|-+..++++|+++-+++.+.+-.+. ...|..+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888776532 2455667777888888888888888887777653333 23566777777778889999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 549 MVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
..+...+ .+..-..+.+.....|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++.++.+....++
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~- 283 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD- 283 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-
Confidence 9887533 44455566788899999999999999999875444466788889999999999999999999988643333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHC
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENC---NAGNWQEALRLYKEMLDR 692 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~ 692 (729)
.-..+...-....-.+.|..++.+-+.+ .|+...+..+++.-. ..|.+.+-...+++|+..
T Consensus 284 -~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 284 -AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred -HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3344444444444556777776666664 688888888887543 356688888888888843
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=5.6e-11 Score=110.96 Aligned_cols=270 Identities=13% Similarity=0.111 Sum_probs=146.0
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHH
Q 004814 222 GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPN---GVTYNVLITGFSRNGELEQAR 298 (729)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~ 298 (729)
++.++|.+.|-+|.+.. +.+..+.-+|.+.|.+.|..++|+.+.+.+.++.--+. ......|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 34566666666666543 33444555666666666666666666666655411111 112333455566666666666
Q ss_pred HHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 299 GLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTL----ATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 299 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
++|..+.+.+ .--..+...|+..|-+..++++|+++-+++.+.|..+.. ..|.-|...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6666666543 223445556666666666666666666666665443322 12333444444455666666666666
Q ss_pred HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 375 LRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVI 454 (729)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 454 (729)
.+.++ ..+..-..+.+.+...|++++|.+.++.+.+.+..--..+...|..+|...|+.++....+..+.+.. +...
T Consensus 207 lqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~ 283 (389)
T COG2956 207 LQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGAD 283 (389)
T ss_pred HhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCcc
Confidence 66543 22333344556666666777777666666666544344555666666666666666666666666542 2223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 004814 455 TYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGE 498 (729)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~ 498 (729)
.-..+...-....-.+.|...+.+-+.. +|+...+..++...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 3333333333333444454444444433 45655555555443
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=9.4e-11 Score=113.08 Aligned_cols=291 Identities=13% Similarity=0.102 Sum_probs=191.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 396 SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREF 475 (729)
Q Consensus 396 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (729)
.|++.+|+++..+-.+.+-.| ...|..-..+.-+.|+.+.+-+++.++.+....++....-+..+.....|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 566666666666655554222 3344444555556666666666666666653344555555556666666666666666
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 476 FNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL-------ITYNVLVHGLCKLGSLEEANELLRK 548 (729)
Q Consensus 476 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 548 (729)
+.++.+.+.. .+.......++|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 6666665433 4455556666666777777777776666666654443 3455666655555555554445554
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 549 MVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 549 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
.... .+.++..-.+++.-+.+.|+.++|.++.++..+++..|+ -.....+.+-++.+.-++..++..+. .+-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4332 344566667777888888999999999888888765554 12223455677777777777776665 23355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
..+.+|+..|.+.+.+.+|...|+...+ ..|+..+|..+..++.+.|+.++|.+.+++.+-.-..|
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 7788888889999999999999987777 46888899999999999999999998888877433333
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=5.9e-09 Score=108.75 Aligned_cols=488 Identities=16% Similarity=0.107 Sum_probs=297.5
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHH---HHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKV---LRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
.+.+.+..++++.-+.+....+...+..++..+-.. +...++.+++ .+-..+.....|....+.+.+.-
T Consensus 236 Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl------ 307 (799)
T KOG4162|consen 236 LWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL------ 307 (799)
T ss_pred HhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH------
Confidence 445667778888888888887776666666554332 3334455554 23222222222222222221111
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 259 MQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEE 338 (729)
Q Consensus 259 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (729)
.-.+.++....+.-|...|..+.-+....|+++.+.+.|++....-+ -....|..+...|...|.-..|..++++
T Consensus 308 ----m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~ 382 (799)
T KOG4162|consen 308 ----MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRE 382 (799)
T ss_pred ----HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 11223333333455778888888888999999999999998876432 2556788888899999999999999888
Q ss_pred HHHCCCCCCHHHHHHHHH-HHH-hcCCHHHHHHHHHHHHHC--CC--CCCHhHHHHHHHHHHHc-----------CCHHH
Q 004814 339 MVTRGVAPTLATYNILIY-GLC-KWGRVSDARHRFFEMLRK--NV--IPDIISYNTLLYGYCRS-----------GNIGE 401 (729)
Q Consensus 339 m~~~g~~p~~~~~~~li~-~~~-~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~-----------g~~~~ 401 (729)
-......|+..+--.++. .|. +.+.+++++..-.+.+.. +. ......|..+.-+|... ....+
T Consensus 383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK 462 (799)
T ss_pred hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence 776543344433333333 332 346677777666665551 11 12334454554444322 12457
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 402 AFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 402 A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
+++.+++..+.+.. |+...-.+.--|+..++++.|.+..++.++.+...+...|..+.-.+...+++.+|+.+.+...+
T Consensus 463 slqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 463 SLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 78888888776522 33333334445778889999999999999986677889999999999999999999999988776
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------C------CCCC-HHHHHHHHHHH
Q 004814 482 KGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK---------------------G------FPPD-LITYNVLVHGL 533 (729)
Q Consensus 482 ~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---------------------~------~~~~-~~~~~~li~~~ 533 (729)
.-.. |......-+..-...++.++++.....++.. | -+.+ ..++..+..-.
T Consensus 542 E~~~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 542 EFGD-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred Hhhh-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 5111 1111122223333456666666555544331 0 0001 11111111111
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH
Q 004814 534 CKLGSLEEANELLRKMVGDG--FIPD------HITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA 605 (729)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~--~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 605 (729)
.. +...+..-. .+.+.- ..|+ ...|......+.+.+..++|...+.+..+.. +-....|...+..+..
T Consensus 621 a~--~~~~~~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~ 696 (799)
T KOG4162|consen 621 AS--QLKSAGSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV 696 (799)
T ss_pred Hh--hhhhccccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH
Confidence 10 000000000 011110 1122 1234455566777888888888887777653 4456677777777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 606 RGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYG--LFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
.|..++|.+.|...... .|+ ..+..+++.++.+.|+..-|.. ++.++.+.+ +.+...|..++..+.+.|+.++|
T Consensus 697 ~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 697 KGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHH
Confidence 88888888888888774 443 4577888888888887776666 888888876 66778888888888888888888
Q ss_pred HHHHHHHHH
Q 004814 683 LRLYKEMLD 691 (729)
Q Consensus 683 ~~~~~~m~~ 691 (729)
.+.|..+.+
T Consensus 774 aecf~aa~q 782 (799)
T KOG4162|consen 774 AECFQAALQ 782 (799)
T ss_pred HHHHHHHHh
Confidence 888888873
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.1e-10 Score=112.72 Aligned_cols=284 Identities=18% Similarity=0.169 Sum_probs=145.2
Q ss_pred CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 292 GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 292 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
|++..|+++..+-.+.+.. ....|..-+.+.-+.|+.+.+-.++.+..+....++...+-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4444454444444443321 222333334444445555555555555444322334444555555555566666666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 372 FEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV-------VTYNTLIDGLCRYGDLEVAQQLKENM 444 (729)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~ 444 (729)
+++.+.++ .+.........+|.+.|++.+...++..|.+.+.-.|. .+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 55555544 34455555566666666666666666666655543332 23444444444444444444444444
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI 524 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 524 (729)
... .+.++..-..++.-+.+.|+.++|.++..+..+++..|. -...-...+.++.+.-++..+.-.+. .+.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChh
Confidence 332 233444555556666666666666666666666644433 11112233445555555555544443 234445
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
.+.+|...|.+.+.+.+|...|+..++. .|+..+|+.+.+++.+.|+.++|.++.++.+
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 5555555555666666666666555543 3555555555555666666665555555544
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=3.8e-10 Score=106.47 Aligned_cols=449 Identities=14% Similarity=0.090 Sum_probs=286.2
Q ss_pred HHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004814 217 VLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQ 296 (729)
Q Consensus 217 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 296 (729)
-+....++..|+.+++.-...+-.....+-.-+..++...|++++|...+..+... -.|+...+..|...+.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHH
Confidence 34456678888888776655442222234444567777899999999999988875 46677778788888888899999
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
|..+-.+..+ ++-.-..+.....+.|+-++-..+.+.+... ..--.+|.......-.+++|++++.+.+.
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9888765432 3333445556666778877777776666542 23344566666666778999999999988
Q ss_pred CCCCCCHhHHHHHHH-HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 377 KNVIPDIISYNTLLY-GYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVIT 455 (729)
Q Consensus 377 ~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 455 (729)
.+ |+-...|..+. .|.+..-++-+.++++-..+. ++-++..-|..+....+.=.-..|++-...+.+.+-..
T Consensus 180 dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 DN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred cC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 65 55555555444 456677777788887776654 23334444444433333322233444444444432111
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 456 YTIMVNGSCKM-----GNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLV 530 (729)
Q Consensus 456 ~~~l~~~~~~~-----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li 530 (729)
...+.-+++. .+-+.|++++--+.+. -+.+-..++--|.+++++.+|..+.+++. |..+.-|-.-.
T Consensus 253 -~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKg 323 (557)
T KOG3785|consen 253 -YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKG 323 (557)
T ss_pred -chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHH
Confidence 1123333443 3557788888777764 33445566777899999999999988764 22333332222
Q ss_pred HHHHhcC-------CHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004814 531 HGLCKLG-------SLEEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHA 602 (729)
Q Consensus 531 ~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 602 (729)
-.++..| ...-|.+.|+-.-+.+..-|.. --.++..++.-..++++.+-.++.+..--...|...+ .+.++
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQA 402 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQA 402 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHH
Confidence 2233333 3445666665544444333322 2344555566667788888888887765333444444 57889
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITY-NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTY-TILINENCNAGNWQ 680 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~ 680 (729)
++..|.+.+|.++|-++....++ |..+| ..|..+|.++++.+-|+.++-++.. +.+..+. ..+.+.|.+++.+-
T Consensus 403 k~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFy 478 (557)
T KOG3785|consen 403 KLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFY 478 (557)
T ss_pred HHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888765555 44555 5667889999999999888755432 3344444 45567899999998
Q ss_pred HHHHHHHHHHHCCCCCCHH
Q 004814 681 EALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 681 ~A~~~~~~m~~~~~~pd~~ 699 (729)
-|-+.|+.+- -..|++.
T Consensus 479 yaaKAFd~lE--~lDP~pE 495 (557)
T KOG3785|consen 479 YAAKAFDELE--ILDPTPE 495 (557)
T ss_pred HHHHhhhHHH--ccCCCcc
Confidence 8888888886 4455443
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=3.8e-11 Score=131.19 Aligned_cols=234 Identities=15% Similarity=0.012 Sum_probs=160.9
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH---------cC
Q 004814 121 KRDEFVFCTILEILIE-----SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT---------KK 186 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~-----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~---------~~ 186 (729)
..+..+|...++.... .+.+++|...++++++.+|. +...+..++.+|. ..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~---------------~a~a~~~La~~~~~~~~~g~~~~~ 317 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN---------------SIAPYCALAECYLSMAQMGIFDKQ 317 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHHHHHHHcCCcccc
Confidence 3456666666665432 13457899999999999887 3445555555443 33
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 004814 187 SMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELL 266 (729)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 266 (729)
+++++|...++++++.++. +..++..+..++...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4578899999998887765 67777778888888888888888888888875 556777888888888888888888888
Q ss_pred HHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 267 WEMQGRGCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 267 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
++..+. .|+ ...+..++..+...|++++|...++++.+...+.++..+..+...+...|+.++|.+.+.++.....
T Consensus 396 ~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~- 472 (553)
T PRK12370 396 NECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI- 472 (553)
T ss_pred HHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-
Confidence 888876 333 2233334445666788888888888877654333455566777777788888888888877655422
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 346 PTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 346 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
.+....+.+...|+..| +.|...++.+.+
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 13344455555666666 366666666554
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.50 E-value=8.1e-11 Score=123.64 Aligned_cols=252 Identities=15% Similarity=0.160 Sum_probs=156.8
Q ss_pred HHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004814 195 VFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGC 274 (729)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 274 (729)
++-.+...|..|+-++|.+++..|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455667788888888888888888888888887 8887777666777778888888877777776655
Q ss_pred CCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHH----hCCCc-cCh-------------hhHHHHHHHHHhCCCHHHHH
Q 004814 275 SPNGVTYNVLITGFSRNGELEQ---ARGLIRDML----KLGLK-VSA-------------HSYNPIICGYSEKGLLVEAL 333 (729)
Q Consensus 275 ~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~----~~~~~-~~~-------------~~~~~li~~~~~~g~~~~A~ 333 (729)
.|-..||..|..+|...||... .++.+..+. ..|+. +.. ..-...+....-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888887544 333222221 12211 000 01112333344445555555
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 334 NLEEEMVTRGV-APTLATYNILIYGLCKW-GRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 334 ~~~~~m~~~g~-~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
+++..+..... .|-.+ ++.-.... ..+++-..+.....+ .|+..+|..+++.-..+|+.+.|..++.+|++
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 55544432211 11111 12211111 122222222222222 37888888888888888888888888888888
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 412 RNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGN 468 (729)
Q Consensus 412 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (729)
.|++.+.+-|-.|+-+ .++...++.+++.|.+.|+.|+..|+...+-.+.++|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888777776666644 77777888888888888888888887776666655444
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.3e-08 Score=106.40 Aligned_cols=479 Identities=14% Similarity=0.013 Sum_probs=301.1
Q ss_pred HCCChhHHHHHHHHHHhCCCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 004814 220 DNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD---SFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQ 296 (729)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 296 (729)
+.+..++++.-+......+.+.+..++-.+-. .|+..|+.+++ .|-........|....+.+.+...
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm-------- 308 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLM-------- 308 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHH--------
Confidence 35566777777777776666666665555433 34456666666 333333322333333333222111
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
-.+.++....+..+...|..+.-+....|+++.+.+.|++....- ......|+.+...|...|.-..|..+++.-..
T Consensus 309 --~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 309 --LLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred --HHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 123333333455688888899999999999999999999987643 33677899999999999999999999988776
Q ss_pred CCCCCC-HhHHHHHHHHHH-HcCCHHHHHHHHHHHhhC--CC--CCCHhhHHHHHHHHHhc-----------CCHHHHHH
Q 004814 377 KNVIPD-IISYNTLLYGYC-RSGNIGEAFLLFDELRSR--NL--VPTVVTYNTLIDGLCRY-----------GDLEVAQQ 439 (729)
Q Consensus 377 ~~~~~~-~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~ 439 (729)
....|+ ...+...-..|. +.+..++++++-.+.... +. ......|..+.-+|... ....++.+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 553343 444433334443 346777777766665541 11 11234454554444322 12457778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 440 LKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGF 519 (729)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~ 519 (729)
.+++..+.+ +.|+.+...+.--|+..++.+.|.+..++.++.+...+...|..+.-.+...+++.+|+.+.+..... .
T Consensus 466 ale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~ 543 (799)
T KOG4162|consen 466 ALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-F 543 (799)
T ss_pred HHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-h
Confidence 888888765 22333333444457888999999999999999877778899999999999999999999999887664 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------------------C-------CCCCHHHHHHHHHHHHhc
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGD---------------------G-------FIPDHITYTSIIHASLEM 571 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~p~~~~~~~l~~~~~~~ 571 (729)
+.|......-+..-...++.++|+.....++.. | ..-...++..+.......
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 222222222222223345555555444333221 0 000111222221111100
Q ss_pred CCHHHHHHHHHHHHHCCCC--CC------hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 572 GDLRRGRDLFNNMLRKGLS--PT------LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR 643 (729)
Q Consensus 572 g~~~~A~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 643 (729)
.+.+..-.. +.+.... |+ ...|......+.+.+..++|...+.++... .+-....|...+..+...|.
T Consensus 624 --~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~ 699 (799)
T KOG4162|consen 624 --LKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQ 699 (799)
T ss_pred --hhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHh
Confidence 000000000 1111111 22 224556677788899999999999998875 23356677788888899999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHH-HHHHHHHhhhccchhhc-HHH
Q 004814 644 IDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALR--LYKEMLDREIEPDYC-THSALLLKQLDKDYKVH-AVE 719 (729)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~pd~~-~~~~ll~~~l~~~g~~~-a~~ 719 (729)
..+|.+.|......+ |.+..+..++...+.+.|+-.-|.. ++..++ .+.|+.+ .|..+ +..+.+.|+.+ |.+
T Consensus 700 ~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dal--r~dp~n~eaW~~L-G~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 700 LEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDAL--RLDPLNHEAWYYL-GEVFKKLGDSKQAAE 775 (799)
T ss_pred hHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHH--hhCCCCHHHHHHH-HHHHHHccchHHHHH
Confidence 999999999998853 3345688999999999998777777 999999 7788655 45555 99999999998 776
Q ss_pred HH
Q 004814 720 YL 721 (729)
Q Consensus 720 ~l 721 (729)
.+
T Consensus 776 cf 777 (799)
T KOG4162|consen 776 CF 777 (799)
T ss_pred HH
Confidence 55
No 65
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.45 E-value=8.8e-09 Score=109.96 Aligned_cols=580 Identities=11% Similarity=0.001 Sum_probs=339.2
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHH
Q 004814 100 IREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLL 179 (729)
Q Consensus 100 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 179 (729)
.+.+...|+..|-.+.+.. ..=..+|+.|+++|...-+...|...|.++.+.++. ........
T Consensus 470 ~rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---------------daeaaaa~ 532 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---------------DAEAAAAS 532 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---------------hhhhHHHH
Confidence 3456677887666555433 123467899999998888888899999999888776 34455667
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLL-PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
+..|+....++.|..+.-..-+..+. .-...|..+.-.+.+.++...|+..|+...+.. |.|...|..++.+|..+|+
T Consensus 533 adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGr 611 (1238)
T KOG1127|consen 533 ADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGR 611 (1238)
T ss_pred HHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCc
Confidence 78888889999998884433333211 011223344555677888899999999988876 6678899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCC------CccChhhHHHHHHHHHhCCCHHH
Q 004814 259 MQEALELLWEMQGRGCSPNG-VTYNVLITGFSRNGELEQARGLIRDMLKLG------LKVSAHSYNPIICGYSEKGLLVE 331 (729)
Q Consensus 259 ~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~ 331 (729)
+..|.++|.+.... .|+. ..---.....|..|.+++|...+......- ..--..++..+...+...|-...
T Consensus 612 y~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k 689 (1238)
T KOG1127|consen 612 YSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK 689 (1238)
T ss_pred eehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999888765 3432 222223345677899999998888876431 11122333344444444555555
Q ss_pred HHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH---H-
Q 004814 332 ALNLEEEMVTR-------GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNI---G- 400 (729)
Q Consensus 332 A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~- 400 (729)
|.+.+++-.+. ....+...|..+ .+|..+|..... + .|+......+..-.-+.+.. +
T Consensus 690 avd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~ 757 (1238)
T KOG1127|consen 690 AVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDL 757 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhH
Confidence 55555544332 111122222211 233344443331 1 13333333333322222222 1
Q ss_pred --HHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----c---C-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 401 --EAFLLFDELRSRNLVPTVVTYNTLIDGLCR----Y---G-DLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLS 470 (729)
Q Consensus 401 --~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~----~---g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (729)
-+.+.+-.-.+ ...+..+|..|+..|.+ . + +...|...+.+.++.. ..+..+|+.|.-. ...|++.
T Consensus 758 l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva 833 (1238)
T KOG1127|consen 758 LFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVA 833 (1238)
T ss_pred HHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhh
Confidence 01111111111 11234444445444433 1 2 2346777777777653 4467778777654 5667887
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 004814 471 MAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKM- 549 (729)
Q Consensus 471 ~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 549 (729)
-|...|-+..... +....+|..+...+.+..+++.|...|....... |.+...|-.........|+.-++..+|..-
T Consensus 834 ~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~ 911 (1238)
T KOG1127|consen 834 CAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSD 911 (1238)
T ss_pred hhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhH
Confidence 7777776665542 2356778888888899999999999999887764 667777776666666788888888888762
Q ss_pred -H--hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------CCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 004814 550 -V--GDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLR---------KGLSPTLVTYTVLIHAHAARGRLELAFMYFS 617 (729)
Q Consensus 550 -~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (729)
. ..|--++..-|-........+|+.++-....+++.. .+.+.+...|...+...-+.+.+.+|.+...
T Consensus 912 el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~ 991 (1238)
T KOG1127|consen 912 ELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELAT 991 (1238)
T ss_pred HhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2 223334444444444445666766654443333221 1446677888888888888888888877776
Q ss_pred HHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 618 EMQVK-GIRPNVITYN----ALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDR 692 (729)
Q Consensus 618 ~~~~~-g~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 692 (729)
+.... ..+-+...|+ .+...++..|.++.|..-+...-. ..+..+..+-+ +..-.|+++++.+.|++++.-
T Consensus 992 RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsi 1067 (1238)
T KOG1127|consen 992 RLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSI 1067 (1238)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhh
Confidence 65421 0122334444 344556666777765544332211 11111111111 123478889999999998832
Q ss_pred -CCCCCHHHHHHHHHhhhccchhhc-HHHHH
Q 004814 693 -EIEPDYCTHSALLLKQLDKDYKVH-AVEYL 721 (729)
Q Consensus 693 -~~~pd~~~~~~ll~~~l~~~g~~~-a~~~l 721 (729)
+-..|.+...+-++.+++.++..+ |.+.+
T Consensus 1068 s~se~d~vvLl~kva~~~g~~~~k~~A~~lL 1098 (1238)
T KOG1127|consen 1068 SNSESDKVVLLCKVAVCMGLARQKNDAQFLL 1098 (1238)
T ss_pred cccccchhhhhHHHHHHHhhcccchHHHHHH
Confidence 223343333333355666666666 66554
No 66
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=2.1e-09 Score=113.25 Aligned_cols=131 Identities=14% Similarity=0.090 Sum_probs=80.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHh
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK--GIRPNVITYNALINGLCR 640 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~~~~~~~l~~~~~~ 640 (729)
.++..++..-+..+++..-++....-+ ...|..|++-++...+.+.|..+.++.... .+..|..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 344444444444444444333332211 256777888888888888888887777543 123345556777788888
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 641 LRRIDQAYGLFIDMEEEGI-LPN-KYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
.+....+.++++++.+.-. .|+ ..+...+.+.....|+.+.-.+..+-+...|+.-
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 8888888888888776311 222 2344556666677788777777777766555554
No 67
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.42 E-value=7.3e-09 Score=109.19 Aligned_cols=294 Identities=18% Similarity=0.169 Sum_probs=205.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHh-HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN-CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKE 256 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (729)
-...++...|++++|++.+++-...- +|..+ ....+..+.+.|+.++|..+|+.+++.+ |.|..-|..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhh
Confidence 34566788999999999998866542 45444 5568889999999999999999999987 55666666666666333
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHH
Q 004814 257 -----GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGEL-EQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLV 330 (729)
Q Consensus 257 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 330 (729)
.+.+...++|+++... -|.......+.-.+..-..+ ..+...+..++..|+| .+|+.|-..|....+..
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 2577888999988776 24333332222222221223 3456667777788864 46777777777666666
Q ss_pred HHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004814 331 EALNLEEEMVTR----G----------VAPTL--ATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC 394 (729)
Q Consensus 331 ~A~~~~~~m~~~----g----------~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (729)
-..+++...... | -.|.. .++.-+...|...|++++|++.+++.+...+ -.+..|..-.+.+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence 666666665532 1 12333 3446667778889999999999999888764 34677888888888
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhc
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVI------TY--TIMVNGSCKM 466 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~ 466 (729)
+.|++.+|.+.++..+... ..|...-+-.+..+.+.|++++|.+++....+.+..|... .| .....+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888775 3366667777788888999999999988887765433221 12 3446677888
Q ss_pred CCHHHHHHHHHHHHH
Q 004814 467 GNLSMAREFFNEMLR 481 (729)
Q Consensus 467 g~~~~A~~~~~~~~~ 481 (729)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888887776655
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=99.42 E-value=9.4e-11 Score=128.08 Aligned_cols=249 Identities=15% Similarity=0.058 Sum_probs=183.1
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh---------cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHH
Q 004814 104 PRIALRFFRWVETQPGVKRDEFVFCTILEILIE---------SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIK 174 (729)
Q Consensus 104 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~---------~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 174 (729)
.+.|+.+|+.+.... +.+..+|..+..++.. .+.+++|...++++++.+|+ +..
T Consensus 277 ~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~---------------~~~ 339 (553)
T PRK12370 277 LQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN---------------NPQ 339 (553)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC---------------CHH
Confidence 468889998887654 3466777777765542 23478999999999999887 577
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..+..++...|++++|...|+++++.++. +...+..+..++...|++++|...+++..+.+ +.+...+..++..+.
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~ 417 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 8888999999999999999999999998755 67778889999999999999999999999875 333444445555677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
..|++++|...++++.+...+-+...+..+...+...|+.++|.+.++++.... +.+....+.+...|+..| ++|..
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~ 494 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALP 494 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHH
Confidence 789999999999998775322245567778888999999999999999976653 234455666777778777 47777
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 335 LEEEMVTRG-VAPTLATYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 335 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
.++.+.+.. ..+....+ +-..+.-.|+-+.+..+ +++.+.
T Consensus 495 ~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 495 TIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 777766531 11111122 33334445666666554 555553
No 69
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.41 E-value=1.7e-07 Score=100.20 Aligned_cols=195 Identities=12% Similarity=0.141 Sum_probs=118.9
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccch------------------hhhHH
Q 004814 100 IREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMH------------------GILDV 161 (729)
Q Consensus 100 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~------------------~~~~~ 161 (729)
.+.+|+.++.|-..+.+..+ ...-.+.+..+.......+++..++-.+++.+.. .+.|.
T Consensus 521 ~r~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADA 597 (1666)
T KOG0985|consen 521 KRSSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADA 597 (1666)
T ss_pred HccChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHH
Confidence 35688999988877765443 3445566777777777777777766666654321 12233
Q ss_pred HhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH----HHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 162 LIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN----RIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 162 l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
++++.--+ .. -+-.+++.|-++|-++.|++.|..+.... ..++.-+ --+..+...-.++++.+.++.|...
T Consensus 598 ILgN~mFt--Hy-Dra~IAqLCEKAGL~qraLehytDl~DIK--R~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~ 672 (1666)
T KOG0985|consen 598 ILGNDMFT--HY-DRAEIAQLCEKAGLLQRALEHYTDLYDIK--RVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSA 672 (1666)
T ss_pred HHhccccc--cc-cHHHHHHHHHhcchHHHHHHhcccHHHHH--HHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33221111 11 15678889999999999998877664321 0111000 1122344445678888888888887
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR-----------GCSPNGVTYNVLITGFSRNGELEQARGLIR 302 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (729)
+++.|..+...+..-|+.+=-.+...++|+..+.. ++..|....--.|.+.|+.|++.+.+++.+
T Consensus 673 NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicr 748 (1666)
T KOG0985|consen 673 NIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICR 748 (1666)
T ss_pred HHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHh
Confidence 77777777766666676666666666666665432 133344444566778888888887777644
No 70
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=5.9e-08 Score=98.40 Aligned_cols=444 Identities=14% Similarity=0.111 Sum_probs=252.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHH--HHHHHH--
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNT--MLDSFC-- 254 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~-- 254 (729)
=++.+.+.|++++|++...+++..++. |..++..-+.++.+.++|++|+.+.+.-.. ..+++. +=.+||
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pd-d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPD-DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCC-cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 356688999999999999999998754 666777888889999999999966553221 112222 245555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhCCCHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV-SAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A 332 (729)
+.++.++|+..++- ..+ +..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++..- .+
T Consensus 91 rlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~-------a~ 158 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA-------AA 158 (652)
T ss_pred HcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-------Hh
Confidence 78999999999882 333 33466666788899999999999999998876431 111111111111 11
Q ss_pred HHHHHHHHHCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHC-------CCCC--CHh-----HHHHHHHHHHH
Q 004814 333 LNLEEEMVTRGVAPTLATYNI---LIYGLCKWGRVSDARHRFFEMLRK-------NVIP--DII-----SYNTLLYGYCR 395 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~-------~~~~--~~~-----~~~~li~~~~~ 395 (729)
... ..+......| ..+|.. ....+...|++.+|+++++..... +-.- +.. .-..|..++..
T Consensus 159 l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 159 LQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred hhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 111 1122222222 223333 345677889999999999887321 1101 111 12234456677
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhh----HHHHHHHHHhcCCHH--HHHHHHHHHHHCCC----------CCCHHHH-HH
Q 004814 396 SGNIGEAFLLFDELRSRNLVPTVVT----YNTLIDGLCRYGDLE--VAQQLKENMINQGI----------LPDVITY-TI 458 (729)
Q Consensus 396 ~g~~~~A~~l~~~m~~~~~~~~~~~----~~~ll~~~~~~g~~~--~A~~~~~~~~~~~~----------~~~~~~~-~~ 458 (729)
.|+.++|..+|......+ .+|... -|.|+.. ....++- .++..++....... ....... +.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888875 334322 2222221 1111111 11112211111000 0011111 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQI-AGEL-KLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL 536 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li-~~~~-~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~ 536 (729)
++..| .+..+.+.++...+... .|.. .+..++ .+.. +...+.++.+++...-+..-.....+.-.++......
T Consensus 315 lL~l~--tnk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLALF--TNKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHH--hhhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc
Confidence 22222 23334444443333221 2332 233333 2222 2224677777777766653222345556667777888
Q ss_pred CCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhh----HHHHHHH
Q 004814 537 GSLEEANELLR--------KMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK--GLSPTLVT----YTVLIHA 602 (729)
Q Consensus 537 g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~----~~~l~~~ 602 (729)
|+++.|.+++. .+.+.+..|- +...+...+.+.++.+.|..++++.... .-.+.... +.-+...
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 89999988888 5555554444 4445566677777777777777766542 00122222 2233333
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDM 654 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 654 (729)
-.+.|+.++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-+.+
T Consensus 468 ~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 446788888888888888853 45777888888888876 667777665544
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=4.5e-10 Score=109.10 Aligned_cols=200 Identities=15% Similarity=0.081 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
....+..++..|...|++++|...++++.+..+. +...+..+...+...|++++|.+.|++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3556777788888888888888888888776533 45666777777788888888888888777654 445566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHH
Q 004814 252 SFCKEGEMQEALELLWEMQGRGCS-PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLV 330 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 330 (729)
.+...|++++|.+.+++....... .....+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 777778888888877777654211 223445556666667777777777777766553 223445556666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 331 EALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEML 375 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 375 (729)
+|.+.+++.... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 666666666554 22244444455555555566666655555443
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=3.8e-10 Score=109.64 Aligned_cols=203 Identities=14% Similarity=0.028 Sum_probs=168.2
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.....+..++..+...|++++|...+++++..+|. +...+..++..|...|++++|.+.+++..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 93 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---------------DYLAYLALALYYQQLGELEKAEDSFRRALT 93 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34577888899999999999999999999887665 456778889999999999999999999998
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI-KPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 280 (729)
..+. +...+..+...+...|++++|.+.|++..+... +.....+..+...+...|++++|.+.+++..... +.+...
T Consensus 94 ~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 171 (234)
T TIGR02521 94 LNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPES 171 (234)
T ss_pred hCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHH
Confidence 7654 566778888999999999999999999987422 2234567778889999999999999999988763 335667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
+..+...+...|++++|...+++..+. .+.+...+..++..+...|+.++|..+.+.+...
T Consensus 172 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 172 LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888899999999999999999999887 3456677778888889999999999988877653
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.36 E-value=7.6e-08 Score=101.59 Aligned_cols=295 Identities=15% Similarity=0.097 Sum_probs=205.2
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChH
Q 004814 130 ILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVK 209 (729)
Q Consensus 130 l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 209 (729)
...++...|++++|+..++.....-++ ...+....+..|.+.|+.++|..++..+++.++. |..
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~I~D---------------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~ 73 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQILD---------------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYD 73 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhhCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHH
Confidence 345678899999999988765443222 3556778888999999999999999999998743 444
Q ss_pred hHHHHHHHHHHC-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 210 NCNRIIKVLRDN-----GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM-QEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 210 ~~~~ll~~l~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
-|..+..++.-. ...+....+|+++...- |...+...+.-.+.....+ ..+...+..+..+|++ .+|+.
T Consensus 74 Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~ 148 (517)
T PF12569_consen 74 YYRGLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSN 148 (517)
T ss_pred HHHHHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHH
Confidence 445555555222 24677788888887652 4333333332222222223 3455666777777755 35666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhC----C----------CccCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 004814 284 LITGFSRNGELEQARGLIRDMLKL----G----------LKVSA--HSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT 347 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 347 (729)
|-..|....+.+-..+++...... + -+|+. .++.-+...|...|++++|++..++.++..+. .
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~ 227 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-L 227 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-c
Confidence 666676555556666666665432 1 12333 34466677888999999999999999887432 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh-------
Q 004814 348 LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVT------- 420 (729)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~------- 420 (729)
+..|..-...+-..|++.+|.+.++.....+. .|...-+-.+..+.++|++++|.+++......+..|-...
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 77888889999999999999999999988766 6777778888889999999999999988877664332221
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 421 -YNTLIDGLCRYGDLEVAQQLKENMINQ 447 (729)
Q Consensus 421 -~~~ll~~~~~~g~~~~A~~~~~~~~~~ 447 (729)
......+|.+.|++..|++.|..+.+.
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 134467888999999998888777653
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=7.4e-11 Score=110.03 Aligned_cols=231 Identities=16% Similarity=0.045 Sum_probs=190.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKE 256 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (729)
..+.++|.+.|++.+|.+.++..++.- |.+.+|..+.++|.+.++...|+.+|.+-++.- +-|+.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 467889999999999999999998874 556677778899999999999999999888752 34444445677788888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHH
Q 004814 257 GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLE 336 (729)
Q Consensus 257 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (729)
++.++|.++|++..+. .+.++.....+...|.-.++.+-|...++++++.|.. ++..|+.+.-+|...++++-++..|
T Consensus 304 ~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999998886 3446777777888899999999999999999999865 7888999988888999999999999
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 004814 337 EEMVTRGVAPT--LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN 413 (729)
Q Consensus 337 ~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 413 (729)
++....--.|+ ...|-.+.......|++..|.+.|.-.+..+. .+...+|.|.-.-.+.|++++|..++.......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 88887543333 34577788888889999999999998888765 567788999888899999999999998877653
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=5.7e-08 Score=94.08 Aligned_cols=272 Identities=13% Similarity=0.015 Sum_probs=142.7
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004814 416 PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQI 495 (729)
Q Consensus 416 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 495 (729)
-|......+.+.+...|+.++|+..|++..-.+ +-+........-.+.+.|+.+.-..+...+.... +-....|-.-.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 344445555555555555555555555544331 1111111111222334455555555544444331 01122222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 496 AGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLR 575 (729)
Q Consensus 496 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (729)
......++++.|+.+-++.++.+ +.+...|-.-...+...|++++|.-.|+..+...+ -+..+|..++++|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 33344555556665555555543 33444444444555666666666666666655432 25566666666666666666
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLI-HAHAA-RGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFI 652 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 652 (729)
+|.-+-+...+. ++.+..+.+.+. ..+.- -.--++|.+++++.... .|+ ....+.+...+...|+.++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 666665555443 234444444442 22221 12235666666666553 344 2244566666667777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 653 DMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 653 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+... ..||....+.|.+.+...+.+.+|.+.|..++ .+.|..
T Consensus 463 ~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--r~dP~~ 504 (564)
T KOG1174|consen 463 KHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--RQDPKS 504 (564)
T ss_pred HHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--hcCccc
Confidence 6665 35666777777777777777777777777766 555544
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2.4e-10 Score=106.71 Aligned_cols=229 Identities=17% Similarity=0.076 Sum_probs=191.4
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHh
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY-NVLITGFSR 290 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~ 290 (729)
+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|-++|.+-.+.+.|+.++.+-.+. -|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56888999999999999999988876 678889999999999999999999999988876 4444444 456678888
Q ss_pred CCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 291 NGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHR 370 (729)
Q Consensus 291 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~ 370 (729)
.++.++|.++++...+.. +.++.+...+...|.-.++++-|+..++++.+-|+. +...|+.+.-+|.-.++++-++..
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 899999999999998875 457777888888899999999999999999999887 888888888888889999999999
Q ss_pred HHHHHHCCCCCC--HhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 371 FFEMLRKNVIPD--IISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ 447 (729)
Q Consensus 371 ~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 447 (729)
|.+.+..--.|+ ...|..+.......|++.-|.+.|+-....+ ......++.|.-.-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 988876533333 4678888888889999999999998887764 335678888888888999999999999888765
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=3.3e-07 Score=93.14 Aligned_cols=449 Identities=11% Similarity=0.022 Sum_probs=220.0
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHH
Q 004814 210 NCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVL--ITG 287 (729)
Q Consensus 210 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~ 287 (729)
.+-+=++.+.+.|++++|.+...+++..+ +.+...+..-+-++.+.+++++|+.+.+.-.. ..+++.. =.+
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKA 86 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKA 86 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHH
Confidence 33445566677888999999999998866 66677777778888889999999865543221 1112222 234
Q ss_pred HH--hCCCHHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCC
Q 004814 288 FS--RNGELEQARGLIRDMLKLGLKV-SAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC-KWGR 363 (729)
Q Consensus 288 ~~--~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~ 363 (729)
|| +.+..++|...++ |..+ +..+...-...+.+.|++++|+++|+.+.+.+.+ + +...+..-+ ..+-
T Consensus 87 Yc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 87 YCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAA 157 (652)
T ss_pred HHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHH
Confidence 44 6788898888887 2222 2335555566777889999999999988776432 1 211111110 0010
Q ss_pred HHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC-------CCCCCH-------hhHHHHHHH
Q 004814 364 VSDARHRFFEMLRKNVIP--DIISYNTLLYGYCRSGNIGEAFLLFDELRSR-------NLVPTV-------VTYNTLIDG 427 (729)
Q Consensus 364 ~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------~~~~~~-------~~~~~ll~~ 427 (729)
-..+. + +......| +-..+......+...|++.+|+++++...+. +-.-+. ..-..+...
T Consensus 158 ~l~~~-~---~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayV 233 (652)
T KOG2376|consen 158 ALQVQ-L---LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYV 233 (652)
T ss_pred hhhHH-H---HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Confidence 01110 1 11111212 2222333445566788888888888877221 100011 111234445
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCH-H-HHHHHHHHHHHCCC----------CCCHhhH
Q 004814 428 LCRYGDLEVAQQLKENMINQGILPDVIT----YTIMVNGSCKMGNL-S-MAREFFNEMLRKGL----------QPDRFAY 491 (729)
Q Consensus 428 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~-~-~A~~~~~~~~~~g~----------~~~~~~~ 491 (729)
+-..|+.++|..++...++.. ++|... -|.|+.. ..-.++ + .++..++....... +......
T Consensus 234 lQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~ 311 (652)
T KOG2376|consen 234 LQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYR 311 (652)
T ss_pred HHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 667788888888888887775 334322 2222211 111111 1 11122221111100 0000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 492 TTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC--KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASL 569 (729)
Q Consensus 492 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (729)
+..+ ...-.+..+.+.++..... +..|. ..+..++.... +......|.+++...-+....-...+.-.++....
T Consensus 312 N~~l-L~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNAL-LALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHH-HHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHH
Confidence 1100 1111222222222222111 11122 22222222221 12235555566655554433323344455555666
Q ss_pred hcCCHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHH
Q 004814 570 EMGDLRRGRDLFN--------NMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK--GIRPN----VITYNALI 635 (729)
Q Consensus 570 ~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--g~~p~----~~~~~~l~ 635 (729)
..|+++.|.+++. .+.+.+. .+.+...+...+.+.++.+.|..++.++..- .-.+. ..++..++
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 6677777776666 3333332 2334444555566666666666666665431 00111 11223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
..-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-++
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 33445566667777777766653 55666666666666543 44555554333
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.30 E-value=2.5e-09 Score=111.20 Aligned_cols=195 Identities=23% Similarity=0.255 Sum_probs=133.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCH-HHH
Q 004814 496 AGELKLGDTSEAYRLQEEMLAK-----G--FPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD-----GF-IPDH-ITY 561 (729)
Q Consensus 496 ~~~~~~g~~~~A~~l~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~~-~~~ 561 (729)
..|...+++++|..+|++++.. | .+.-..+++.|...|.+.|++++|...++++.+. +. .|.. ..+
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 3444445555555555444331 1 1222345666777777778777777766655431 11 1222 246
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C--CCCC
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRK---GLSPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVK-----G--IRPN 627 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g--~~p~ 627 (729)
+.+...++..+++++|..+++...+. -..++ ..+++.|...|.+.|++++|.+++++++.. | ..-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 66777788889999998888876643 11122 458999999999999999999999998753 1 1112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDMEE----EGI-LPN-KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
...++.+...|.+.+++++|.++|.+... .|. .|+ ..+|..|+..|.+.|++++|+++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 45678899999999999999999988654 221 123 3578999999999999999999998887
No 79
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.6e-06 Score=91.55 Aligned_cols=375 Identities=12% Similarity=0.114 Sum_probs=192.4
Q ss_pred hhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CCChHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 158 ILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL--LPDVKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 158 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
+.|..+...++...++.--..-+.++...+-..+-++++++++-... .-+...-|.++-...+. +.....+..+++.
T Consensus 969 LiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLd 1047 (1666)
T KOG0985|consen 969 LIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLD 1047 (1666)
T ss_pred HHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhc
Confidence 34444455555555677777888999999999999999999875321 11111122232222222 2333444444444
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------CCCCHHHHHHHHHHHHhCCCH
Q 004814 236 EFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRG---------------------CSPNGVTYNVLITGFSRNGEL 294 (729)
Q Consensus 236 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------------------~~p~~~~~~~li~~~~~~g~~ 294 (729)
..+ .|+ +.......+-+++|..+|++....+ ---....|..+..+-.+.|.+
T Consensus 1048 nyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1048 NYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred cCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCch
Confidence 332 111 1222333344555555554421100 000233455555555566666
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 295 EQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 295 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
.+|.+-|-+. .|+..|..++....+.|.+++-.+.+.-.++..-+|.+. +.||-+|++.+++.+-.+.+
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 6555544321 245556666666666666666666655555544444433 34556666666655544332
Q ss_pred HHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 375 LRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVI 454 (729)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 454 (729)
.| ||......+.+-|...|.++.|.-+|.. ...|..|...+...|++..|.+.-++. .+..
T Consensus 1190 --~g--pN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~k 1250 (1666)
T KOG0985|consen 1190 --AG--PNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKA------NSTK 1250 (1666)
T ss_pred --cC--CCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchh
Confidence 12 5555555666666666666666555532 233455555556666666665543332 2455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 455 TYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC 534 (729)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~ 534 (729)
+|..+-.+|...+.+.-| +|...++.....-...++..|...|-+++.+.+++..+... ....-.|+.|.-.|+
T Consensus 1251 tWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1251 TWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHH
Confidence 666666665554443322 22222223344456667777888888888888887655331 223445666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHhcCCHHHH
Q 004814 535 KLGSLEEANELLRKMVGDGFIP-------DHITYTSIIHASLEMGDLRRG 577 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~A 577 (729)
+-. +++..+.++-.-.+--.| ....|+-+.-.|.+-..++.|
T Consensus 1325 kyk-p~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1325 KYK-PEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred hcC-HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 543 444444333322211011 123455555555555555544
No 80
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1e-06 Score=85.67 Aligned_cols=267 Identities=15% Similarity=0.007 Sum_probs=140.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
|+.....+.+.+...|+.++|...|+.....++ -+........-.+.+.|+.+....+...+.... .-....|-.-+.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ 308 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence 444445555555555555555555555444221 111112222223344555555554444443321 011112222223
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 506 (729)
.+...++++.|..+-++.++.+ +.+...+-.-...+...|+.++|.-.|+...... +-+...|..++.+|...|++.+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 3344455666666666665543 2344445444555556666666666666655542 1245566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDLITYNVLV-HGLCK-LGSLEEANELLRKMVGDGFIPD-HITYTSIIHASLEMGDLRRGRDLFNN 583 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~~~~~~li-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 583 (729)
|.-+-....+. ++.+..+...+. ..+.- ..--++|.+++++.++. .|+ ....+.+...+...|..+.+..++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 66655555443 244444444442 22222 11236677777766654 333 23445556666677777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 584 MLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
.+.. .||....+.|.+.+...+.+.+|...|..+...
T Consensus 464 ~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 464 HLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6664 567777777777777777777777777777664
No 81
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.26 E-value=1.6e-07 Score=100.72 Aligned_cols=479 Identities=13% Similarity=0.057 Sum_probs=255.9
Q ss_pred HHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 189 VEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWE 268 (729)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 268 (729)
...|+..|-+.++..+. =...|..|...|+...+...|.+.|+..-+.+ ..+...+....+.|+...+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 66777777777665433 34557777777777777778888888887765 55677777788888888888888877433
Q ss_pred HHhCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 004814 269 MQGRGCSPNGVTYNV--LITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP 346 (729)
Q Consensus 269 m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 346 (729)
.-+. -+.-...+|. ..-.|...++...|..-|+...+.+ +.|...|..++.+|...|++..|+++|.+.....+.
T Consensus 552 ~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~- 628 (1238)
T KOG1127|consen 552 AAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL- 628 (1238)
T ss_pred Hhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-
Confidence 3222 1111122222 3334556677788888888877765 337778888888888888888888888777664222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh-------CC
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRK------NVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS-------RN 413 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~~ 413 (729)
+...---..-..|..|++.+|+..+...+.. +...-..++..+...+.-.|-..+|.+.+++..+ ..
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 1111112234456778888888777776542 1111223333333334444444444444443322 11
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHCCCCCC
Q 004814 414 LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNL---S---MAREFFNEMLRKGLQPD 487 (729)
Q Consensus 414 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~~~g~~~~ 487 (729)
...+...|..+. +|..+|-... .+ .|+......+..-.-..+.. + -+.+.+-.-++. ..+
T Consensus 709 ~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~ 774 (1238)
T KOG1127|consen 709 LQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIH 774 (1238)
T ss_pred hhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhc
Confidence 111122222111 2222222221 11 12222222222112122211 1 111111111111 122
Q ss_pred HhhHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004814 488 RFAYTTQIAGELK--------LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHI 559 (729)
Q Consensus 488 ~~~~~~li~~~~~--------~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 559 (729)
..+|..++..|.+ ..+...|+..+...++.. ..+...|+.|.-. ...|++.-|...|-+..... +....
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchh
Confidence 4444444443332 122346677777666652 3456666666544 55566666666665555443 23556
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV----KGIRPNVITYNALI 635 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~p~~~~~~~l~ 635 (729)
+|..+.-.+.+..+++.|...|...+... |.|...|..........|+.-++..+|..-.+ .|-.++...|-+..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 67777777777778888888887777664 44556665555555567777777777765221 23334444444443
Q ss_pred HHHHhcCCHHHHHHHHHHHHH---------cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEE---------EGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~---------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
......|+.++-+...+++.. .|.+.+...|...+....+.+.+++|.....+++
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444455555543333332221 2334455667777666677777777776666654
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=3.2e-06 Score=88.93 Aligned_cols=327 Identities=17% Similarity=0.110 Sum_probs=194.2
Q ss_pred CHHHHHHHHH--HHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 123 DEFVFCTILE--ILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 123 ~~~~~~~l~~--~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
|..|-..|++ .|...|.++.|+...+.+. +..+|+.+++++.+..++|-|.-.+..|.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------------------S~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------------------SDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------------------hhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 5566666665 3556788999887654332 45688888888888888888866655543
Q ss_pred HCC---------CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 201 RNG---------LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 201 ~~~---------~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (729)
... -.++ ..-..+.......|..++|..+|++-.+ |..|=..|-..|.+++|.++-+.--.
T Consensus 785 ~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DR 854 (1416)
T KOG3617|consen 785 NARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDR 854 (1416)
T ss_pred hhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccc
Confidence 211 0122 2222344445678899999999998876 44555667778999999988755322
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----------hCCC---------ccChhhHHHHHHHHHhCCCHHHH
Q 004814 272 RGCSPNGVTYNVLITGFSRNGELEQARGLIRDML----------KLGL---------KVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 272 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~~~---------~~~~~~~~~li~~~~~~g~~~~A 332 (729)
- . =..||.....-+...++.+.|++.|++.- +..+ ..|...|.-....+...|+.+.|
T Consensus 855 i--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaA 931 (1416)
T KOG3617|consen 855 I--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAA 931 (1416)
T ss_pred e--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHH
Confidence 2 1 22356566666677788888888776532 1110 11333444444455567777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR 412 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 412 (729)
+.+|..... |-+++...|-.|+.++|-++-++- .|......+.+.|-..|++.+|...|-+...
T Consensus 932 l~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa- 995 (1416)
T KOG3617|consen 932 LSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA- 995 (1416)
T ss_pred HHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-
Confidence 777776553 456777777788888887765543 4666677788888888888888888876543
Q ss_pred CCCCCHhhHHHHHHHH-------------HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 413 NLVPTVVTYNTLIDGL-------------CRYG--DLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFN 477 (729)
Q Consensus 413 ~~~~~~~~~~~ll~~~-------------~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (729)
+...|+.| ...| +.-.|-++|++. |.. ....+..|-+.|.+.+|+++--
T Consensus 996 --------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 996 --------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred --------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHH
Confidence 22222221 1111 222333333332 100 1112234666777766665421
Q ss_pred --------HHHHC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 478 --------EMLRK--GLQPDRFAYTTQIAGELKLGDTSEAYRLQEEM 514 (729)
Q Consensus 478 --------~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 514 (729)
+++.. ....|+...+.-...++...++++|..++-..
T Consensus 1060 ~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred hhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 12222 22345566666666677777777777665443
No 83
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=7.3e-08 Score=96.93 Aligned_cols=422 Identities=14% Similarity=0.062 Sum_probs=226.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
.++.+..|+++.|...|.+..... ++|.+.|..=..+|.+.|++++|.+=-.+-++..+ .=...|+....++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p-~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP-DWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC-chhhHHHHhHHHHHhcccH
Confidence 467788999999999999988873 55888898889999999999999887777776542 2356788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHCCCCCCH--------hHHHHHHHHHHHc---
Q 004814 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFE--MLRKNVIPDI--------ISYNTLLYGYCRS--- 396 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~~~--------~~~~~li~~~~~~--- 396 (729)
++|+.-|.+-++.... |...++.+..++.... .+.+.|.. +. .+...+. ..|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~---~~~~~~~~p~~~-~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDY---AADQLFTKPYFH-EKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred HHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHH---HhhhhccCcHHH-HHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 9999999998886433 6677777777761110 01111100 00 0000111 1122222211110
Q ss_pred -------CCHHHHHHHHHHHh-----hCC-------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHH
Q 004814 397 -------GNIGEAFLLFDELR-----SRN-------LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN-QGILPDVITY 456 (729)
Q Consensus 397 -------g~~~~A~~l~~~m~-----~~~-------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 456 (729)
.++..|.-.+.... ..+ ..|. .+. ........++.+ .....-..-.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-----------~~~---~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-----------KQE---HNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-----------ccc---CCCCCccchhHHHHHHHHhhhHH
Confidence 00111111110000 000 0000 000 000000000000 0000011223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HH
Q 004814 457 TIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYN-------VL 529 (729)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-------~l 529 (729)
..+.++..+..+++.|++-+....+.. -+..-++....+|...|.+.++....+..++.|.. ...-|+ .+
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 445555566666666666666666553 23334444445666666666666555555554311 111122 23
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHHcCC
Q 004814 530 VHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL-VTYTVLIHAHAARGR 608 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 608 (729)
..+|.+.++++.|+..|.+.+.....|+. ..+....+++....+...-.+ |.. .---.-+..+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccC
Confidence 33555566777777777776654333322 122233444444443333222 221 111122455667777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 609 LELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
+..|++.|.++++.. +-|...|....-+|.+.|.+..|++-.+..++.+ ++....|.--+.++....+|++|.+.|++
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777764 3366677777777777777777777777777653 33344555556666667777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHhhhc
Q 004814 689 MLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 689 m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
.+ ...|+..-+...+..++.
T Consensus 452 al--e~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 452 AL--ELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HH--hcCchhHHHHHHHHHHHH
Confidence 77 455655544444344444
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.24 E-value=2.8e-07 Score=95.35 Aligned_cols=239 Identities=15% Similarity=0.033 Sum_probs=114.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.|-.+++.|...|+++.|.++|-+.-. ++--+..|.+.|++.+|.++-.+.- |.......|.+-..-+-
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~---------~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedld 835 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL---------FKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLD 835 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch---------hHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHH
Confidence 344555555666666665555543211 1334555555666655555544432 21223334444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
+.|++.+|.++|-.+. .|+ ..|.+|-+.|..+...++.++-.- ..-..|...+..-|...|++.+|..
T Consensus 836 ehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~ 903 (1636)
T KOG3616|consen 836 EHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEE 903 (1636)
T ss_pred hhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHH
Confidence 5555555555543321 122 224455555555555554443211 1123455556666777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------------HHCCCCCCHh--------HHHHHHHHHH
Q 004814 335 LEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM------------LRKNVIPDII--------SYNTLLYGYC 394 (729)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~------------~~~~~~~~~~--------~~~~li~~~~ 394 (729)
-|-+..+ |.+-+.+|...+.+++|.++-+.- ..+.+-.+.. ....-++..+
T Consensus 904 ~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~ 974 (1636)
T KOG3616|consen 904 HFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAA 974 (1636)
T ss_pred HHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhh
Confidence 6654432 445556666666666665543321 0000001110 0111223334
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQG 448 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 448 (729)
.++.++-|+++-+-..+.. .|. +...+..-+-..|++++|.+.+-+.++.+
T Consensus 975 d~~afd~afdlari~~k~k-~~~--vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 975 DNCAFDFAFDLARIAAKDK-MGE--VHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred cccchhhHHHHHHHhhhcc-Ccc--chhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 4455555555444333321 112 22233444566788888888888777653
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.1e-06 Score=92.33 Aligned_cols=321 Identities=13% Similarity=0.079 Sum_probs=194.3
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCC-cchHHHHHHHH
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSS-CVSIKILDLLL 180 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l~ 180 (729)
|+.+.|++-.+.+. +...|..|.+++.+.++++-|.-.+.-|-....- ..+-..-.+. ....+ .+
T Consensus 742 G~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga---RAlR~a~q~~~e~eak----vA 807 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA---RALRRAQQNGEEDEAK----VA 807 (1416)
T ss_pred ccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH---HHHHHHHhCCcchhhH----HH
Confidence 55677766555553 5578999999999998888776544332211100 0111000111 01111 12
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
-.-...|++++|..+|++..+. ..+=+.|...|.+++|.++-+.-.+.. -..||.....-+-..++.+
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHH
Confidence 2234678999999999988874 234456778899999988876544322 2345555566666678888
Q ss_pred HHHHHHHHH----------HhCCC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHH
Q 004814 261 EALELLWEM----------QGRGC---------SPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC 321 (729)
Q Consensus 261 ~A~~~~~~m----------~~~~~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 321 (729)
.|++.|++. ..... ..|...|..-..-+-..|+++.|+.+|....+ |.++++
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~Vr 946 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVR 946 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhee
Confidence 888877653 22100 12334444455555667999999999887654 677888
Q ss_pred HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc-----
Q 004814 322 GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS----- 396 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 396 (729)
..|-.|+.++|-++-++-. |....-.|...|-..|++.+|...|.+... +...|+.|-.+
T Consensus 947 I~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 947 IKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred eEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHH
Confidence 8899999999998876532 666666788999999999999999877653 22333322211
Q ss_pred ----------CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHC--CCCCCHHHH
Q 004814 397 ----------GNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKE--------NMINQ--GILPDVITY 456 (729)
Q Consensus 397 ----------g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~--------~~~~~--~~~~~~~~~ 456 (729)
.+.-.|-++|++... -+...+..|-+.|.+.+|+++-= +++.. ....|+...
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence 122233334433210 11223345667777766665421 12222 234567777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 457 TIMVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 457 ~~l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
+...+.++...++++|..++-...
T Consensus 1084 ~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 777777888888888887765544
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.22 E-value=1e-08 Score=102.56 Aligned_cols=237 Identities=16% Similarity=0.032 Sum_probs=150.3
Q ss_pred CCHHHHHHHHHHHHHCCC-CCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 467 GNLSMAREFFNEMLRKGL-QPD--RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEAN 543 (729)
Q Consensus 467 g~~~~A~~~~~~~~~~g~-~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 543 (729)
+..+.++..+.+++.... .|+ ...+......+...|+.++|...|++.++.. |.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345556666666664321 111 2345555666777777777777777777764 556778888888888888888888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004814 544 ELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKG 623 (729)
Q Consensus 544 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 623 (729)
..|++.++..+. +..++..+..++...|++++|.+.++...+.. |+..........+...++.++|...+++....
T Consensus 119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888888876433 45677777778888888888888888888763 33222222222334567788888888766543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C
Q 004814 624 IRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE---G--I-LPNKYTYTILINENCNAGNWQEALRLYKEMLDREIE-P 696 (729)
Q Consensus 624 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p 696 (729)
..|+... ........|+..++ +.++.+.+. . + +.....|..++..+.+.|++++|+..|++++ ... |
T Consensus 195 ~~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al--~~~~~ 268 (296)
T PRK11189 195 LDKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL--ANNVY 268 (296)
T ss_pred CCccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCc
Confidence 2233221 12233345665544 344444421 0 0 1123578888889999999999999999998 444 4
Q ss_pred CHHHHHHHHHhhhccchh
Q 004814 697 DYCTHSALLLKQLDKDYK 714 (729)
Q Consensus 697 d~~~~~~ll~~~l~~~g~ 714 (729)
|.+.++..+++.....+.
T Consensus 269 ~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 269 NFVEHRYALLELALLGQD 286 (296)
T ss_pred hHHHHHHHHHHHHHHHhh
Confidence 777777765655544443
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.2e-08 Score=102.09 Aligned_cols=218 Identities=11% Similarity=-0.033 Sum_probs=138.8
Q ss_pred ChHHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHH
Q 004814 103 KPRIALRFFRWVETQPGVKR--DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLL 180 (729)
Q Consensus 103 ~~~~al~~f~~~~~~~~~~~--~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~ 180 (729)
..+.++.-|..+.......+ ....|..++.++.+.|++++|...|+++++.+|+ ++.+|..++
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------~~~a~~~lg 105 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------MADAYNYLG 105 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHH
Confidence 34666666666654322222 2456778888888889888888888888888776 467888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
..|...|++++|...|+++++..+. +..++..+..++...|++++|.+.|+...+.. |+..............++.+
T Consensus 106 ~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~ 182 (296)
T PRK11189 106 IYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPK 182 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHH
Confidence 8888888888888888888887654 56677778888888888888888888888764 33221222222233456788
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC---CC---ccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 261 EALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL---GL---KVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
+|...|.+.... ..|+...+ . ......|+..++ +.+..+.+. .+ +....+|..+...+.+.|++++|..
T Consensus 183 ~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~ 257 (296)
T PRK11189 183 QAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA 257 (296)
T ss_pred HHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888665543 23332221 1 222334555443 344444321 11 1123456666667777777777777
Q ss_pred HHHHHHHCC
Q 004814 335 LEEEMVTRG 343 (729)
Q Consensus 335 ~~~~m~~~g 343 (729)
.|++..+.+
T Consensus 258 ~~~~Al~~~ 266 (296)
T PRK11189 258 LFKLALANN 266 (296)
T ss_pred HHHHHHHhC
Confidence 777766654
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.4e-11 Score=83.29 Aligned_cols=49 Identities=49% Similarity=0.982 Sum_probs=29.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 241 PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFS 289 (729)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 289 (729)
||+.+||++|++|++.|++++|.++|++|.+.|+.||..||++++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555566666666666666666666666666566666666666655554
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=1.6e-08 Score=105.30 Aligned_cols=128 Identities=21% Similarity=0.120 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C--CC-CH
Q 004814 493 TQIAGELKLGDTSEAYRLQEEMLAK-----G--FPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG----F--IP-DH 558 (729)
Q Consensus 493 ~li~~~~~~g~~~~A~~l~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~ 558 (729)
.+...+...+++++|..+++...+. | .+.-..+++.|...|.+.|++++|.+++++++... . .+ ..
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 3334445555555555555433221 1 01113466777777777777777777777665431 1 11 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 559 ITYTSIIHASLEMGDLRRGRDLFNNMLRK----G--LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
..++.+...|.+.+++++|.++|.+.... | .+....+|..|+..|.+.|++++|.++.+...
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566666666666766666666654321 1 11123355555555666666666655555544
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.18 E-value=3.1e-08 Score=88.84 Aligned_cols=200 Identities=17% Similarity=0.044 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
......|.-.|...|+...|..-++++++..+. +..+|..+...|.+.|..+.|.+-|++..+.. +.+-.+.|-....
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F 112 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence 456677888999999999999999999998765 67788889999999999999999999998876 5677788999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE 331 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 331 (729)
+|.+|++++|.+.|++......-+ -..+|..+.-...+.|+++.|...|++.++... ....+...+.....+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchH
Confidence 999999999999999988753222 234677777777788999999999988888753 245566677777777888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 332 ALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 332 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
|...++....+|. ++..+.-..|..-...|+.+.|-+.=..+..
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8888777777665 5666666667777777776666554444433
No 91
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.16 E-value=3.8e-08 Score=88.31 Aligned_cols=208 Identities=16% Similarity=0.058 Sum_probs=143.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 491 YTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE 570 (729)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 570 (729)
...+..+|...|+...|..-+++.++.+ |.+..+|..+...|.+.|..+.|.+.|++.++..+. +..+.|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3344556777777777777777777764 556667777777777888888888888877776533 56677777777777
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 571 MGDLRRGRDLFNNMLRK-GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYG 649 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 649 (729)
.|++++|...|++.... ....-..+|..++-+..+.|+.+.|...|++.++... -.+.....+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHHH
Confidence 78888888888777764 1112245677777777778888888888888777532 234456677777777788888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 650 LFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 650 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+++.....+ .++..+....|..-...|+-+.|-++=.++. ...|....+..+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~--r~fP~s~e~q~f 246 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ--RLFPYSEEYQTF 246 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH--HhCCCcHHHHhH
Confidence 777777765 4677777777777777787777776655555 445555544443
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3e-07 Score=92.64 Aligned_cols=421 Identities=14% Similarity=0.053 Sum_probs=232.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHh
Q 004814 131 LEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN 210 (729)
Q Consensus 131 ~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 210 (729)
.......|+++.|...|..++..+|. +..+|..=..+|+..|++++|++--.+.++..+. =...
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~---------------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kg 72 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT---------------NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKG 72 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC---------------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhH
Confidence 34566789999999999999988776 3445555667889999999999888888876543 3567
Q ss_pred HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-----
Q 004814 211 CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLI----- 285 (729)
Q Consensus 211 ~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li----- 285 (729)
|+....++.-.|++++|+.-|.+-++.. +.|...++.+.+++.- +.. +.+.|. +...|..+.
T Consensus 73 y~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~--~~~-~~~~~~---------~p~~~~~l~~~p~t 139 (539)
T KOG0548|consen 73 YSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLE--DYA-ADQLFT---------KPYFHEKLANLPLT 139 (539)
T ss_pred HHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhH--HHH-hhhhcc---------CcHHHHHhhcChhh
Confidence 8889999999999999999999988875 5667777777777611 111 111110 111111111
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHH-----HHCC-------CCCCHHHHHH
Q 004814 286 TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEM-----VTRG-------VAPTLATYNI 353 (729)
Q Consensus 286 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~g-------~~p~~~~~~~ 353 (729)
+.+... .+.....+..+.+ |+ -+.+|..-.++..|.-.+... ...| ..|...
T Consensus 140 ~~~~~~----~~~~~~l~~~~~~--p~------~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~---- 203 (539)
T KOG0548|consen 140 NYSLSD----PAYVKILEIIQKN--PT------SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQ---- 203 (539)
T ss_pred hhhhcc----HHHHHHHHHhhcC--cH------hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccc----
Confidence 111111 1111111111111 00 011111111111111111100 0000 111100
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 004814 354 LIYGLCKWGR-VSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYG 432 (729)
Q Consensus 354 li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g 432 (729)
-....-..++ .++.+. . --....-.+.++..+..+++.|.+-+....+.. -+..-++....+|...|
T Consensus 204 ~~~~~~~~~d~~ee~~~-k---------~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~ 271 (539)
T KOG0548|consen 204 EHNGFPIIEDNTEERRV-K---------EKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERG 271 (539)
T ss_pred cCCCCCccchhHHHHHH-H---------HhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhcc
Confidence 0000000000 000000 0 011223445666666667777777776666553 34444555566677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 004814 433 DLEVAQQLKENMINQGILPDVITYTI-------MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS 505 (729)
Q Consensus 433 ~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 505 (729)
.+.+........++.|.. ...-|+. +..+|.+.++++.|+..|.+.+.....|+. ..+....+
T Consensus 272 ~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~E 341 (539)
T KOG0548|consen 272 KYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAE 341 (539)
T ss_pred HHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHH
Confidence 776666666666555422 2222222 333555667778888888776665333322 22333344
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 506 EAYRLQEEMLAKGFPPD-LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 506 ~A~~l~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
++.+..+...-.+ |. ..-...-...+.+.|++..|+..|.++++..+ .|...|....-+|.+.|.+..|++-.+..
T Consensus 342 k~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P-~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 342 KALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDP-EDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-chhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444333222 22 11122235667778888888888888888763 37778888888888888888888887777
Q ss_pred HHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 585 LRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 585 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
++.+ ++....|..-+.++....++++|.+.|++.++.
T Consensus 419 ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 419 IELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7764 444556666666666777888888888888775
No 93
>PF13041 PPR_2: PPR repeat family
Probab=99.13 E-value=1.4e-10 Score=80.68 Aligned_cols=49 Identities=41% Similarity=0.734 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 276 PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555444
No 94
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.13 E-value=2.2e-05 Score=84.12 Aligned_cols=531 Identities=15% Similarity=0.098 Sum_probs=284.9
Q ss_pred HHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 004814 134 LIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNR 213 (729)
Q Consensus 134 l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (729)
....++++.|.....+++++.|+.. ...++.. -...+.|+.++|..+++.....+.. |..+...
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~-------------~a~vLka--Lsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~ 82 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNAL-------------YAKVLKA--LSLFRLGKGDEALKLLEALYGLKGT-DDLTLQF 82 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcH-------------HHHHHHH--HHHHHhcCchhHHHHHhhhccCCCC-chHHHHH
Confidence 3456788999999999998887631 1222222 2357999999999999888777666 8888889
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-
Q 004814 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNG- 292 (729)
Q Consensus 214 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 292 (729)
+-.+|.+.|+.++|..+|++.... -|+......+..+|.+.+++.+-.+.--+|-+. ++-+...+=++++.+.+.-
T Consensus 83 l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 83 LQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhcc
Confidence 999999999999999999999876 477888888888999988887655554444443 3334455545555544321
Q ss_pred ---------CHHHHHHHHHHHHhCC-CccChhhHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 293 ---------ELEQARGLIRDMLKLG-LKVSAHSYNPIICGYSEKGLLVEALNLEE-EMVTRGVAPTLATYNILIYGLCKW 361 (729)
Q Consensus 293 ---------~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~~ 361 (729)
-..-|.+.++.+.+.+ .--+..-...-...+...|++++|++++. ...+.-...+...-+.-++.+...
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 1234666677776654 11122222233445567888999999983 333333333445555667888889
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----------------HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHH
Q 004814 362 GRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC----------------RSGNIGEAFLLFDELRSRNLVPTVVTYNTLI 425 (729)
Q Consensus 362 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----------------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll 425 (729)
+++.+-.++-.++..+|. |. |...++.++ ..+..+...+..++..... ....|-+-+
T Consensus 240 ~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~l 312 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARL 312 (932)
T ss_pred cChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHH
Confidence 999999999999888873 42 333222211 1122222222222222211 112233333
Q ss_pred HHHH---hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-------hHHHHH
Q 004814 426 DGLC---RYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRF-------AYTTQI 495 (729)
Q Consensus 426 ~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-------~~~~li 495 (729)
.+.. .-|+.+++.-.|-+- -|-.| .|..=+..|...=..+.-..++...... .++.. .+...+
T Consensus 313 el~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 313 ELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHH
Confidence 3332 335666554443222 12111 1222222222222222223333332221 11111 011111
Q ss_pred HHHHhcC-----CHHHHHHHHHHH---HHCC------CCCC---------HHHHHHHHHHHHhcCCHH---HHHHHHHHH
Q 004814 496 AGELKLG-----DTSEAYRLQEEM---LAKG------FPPD---------LITYNVLVHGLCKLGSLE---EANELLRKM 549 (729)
Q Consensus 496 ~~~~~~g-----~~~~A~~l~~~~---~~~~------~~~~---------~~~~~~li~~~~~~g~~~---~A~~~~~~~ 549 (729)
....-.| .-+.-...+.+. .++| .-|. .-+-+.|++.+-+.++.. +|+-+++.-
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 1111111 111112222111 1112 1111 123456677777777644 455555555
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H
Q 004814 550 VGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN-V 628 (729)
Q Consensus 550 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~ 628 (729)
+... +.|..+--.+++.|+-.|-...|.++|+.+--+++..|..-|. +..-+...|++..+...++...+- ...+ .
T Consensus 466 lt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkf-y~~~~k 542 (932)
T KOG2053|consen 466 LTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKF-YDSSLK 542 (932)
T ss_pred hhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHH-Hhhhhh
Confidence 5443 2345555567778888888888888888776666665655443 234456677888888877776653 1111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH---HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLF---IDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP--DYCTHSA 703 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~---~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--d~~~~~~ 703 (729)
.+-..+..+| +.|.+.+..++. +++....-.-...+-+..++.++..++.++-...++.|. +.| |...|..
T Consensus 543 E~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~---l~~~e~~I~w~~ 618 (932)
T KOG2053|consen 543 ETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK---LPPSEDRIQWVS 618 (932)
T ss_pred hhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc---cCcchhhccccc
Confidence 1222333333 455655544432 222221101112233455666777788877777777773 444 3344544
Q ss_pred H
Q 004814 704 L 704 (729)
Q Consensus 704 l 704 (729)
+
T Consensus 619 L 619 (932)
T KOG2053|consen 619 L 619 (932)
T ss_pred c
Confidence 4
No 95
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=4.9e-06 Score=86.39 Aligned_cols=248 Identities=20% Similarity=0.179 Sum_probs=156.1
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 392 GYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSM 471 (729)
Q Consensus 392 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (729)
.+...|+++.|+.-|-+... ....+.+.....++.+|+.+++.+..+. .-..-|..+.+.|+..|+++.
T Consensus 715 hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ 783 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEI 783 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHH
Confidence 34455666666655543321 1223455566777888888888777653 233456667778888888888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 472 AREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVG 551 (729)
Q Consensus 472 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 551 (729)
|.++|.+. ..++..|..|.+.|+++.|.++-++.... ......|-+-..-+-+.|++.+|.+++-.+.
T Consensus 784 ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~- 851 (1636)
T KOG3616|consen 784 AEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIG- 851 (1636)
T ss_pred HHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEcc-
Confidence 88887543 23456677888888888888877665432 3344556666666777888888887774432
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 552 DGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITY 631 (729)
Q Consensus 552 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 631 (729)
.|+. .|..|-+.|..+..+++.++-... .-..|...+..-|...|+...|..-|-++.+ |
T Consensus 852 ---~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ 911 (1636)
T KOG3616|consen 852 ---EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------F 911 (1636)
T ss_pred ---CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------H
Confidence 3443 456778888888777776654322 1234556667778888888888877765543 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
.+.+..|...+.+++|.++-+. .| -.|..-....+++-.-.| +.|++++++
T Consensus 912 kaavnmyk~s~lw~dayriakt---eg-g~n~~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKT---EG-GANAEKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhc---cc-cccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence 5666778888888888776542 22 234444444444433333 557777665
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.11 E-value=4.9e-07 Score=94.09 Aligned_cols=203 Identities=9% Similarity=-0.010 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
....|..+...+...|+.+++...+.+.....+... ............+...|++++|...++++.+.
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARA------------TERERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566666666666777776665555554433210 01222333445566777888888888887776
Q ss_pred CCCCChHhHHHHHHHHH----HCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 004814 203 GLLPDVKNCNRIIKVLR----DNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG 278 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 278 (729)
.+. |...+.. ...+. ..+..+.+.+.+..... ..+........+...+...|++++|.+.+++..+.. +.+.
T Consensus 73 ~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~ 148 (355)
T cd05804 73 YPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDA 148 (355)
T ss_pred CCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 543 3333332 11222 23444444444443111 112223344455566667777777777777777652 3345
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc-cCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLK-VSA--HSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
..+..+...+...|++++|...+++..+.... ++. ..|..+...+...|++++|..++++...
T Consensus 149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 56666677777777777777777776654321 121 2344566666777777777777776643
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=7.8e-07 Score=92.58 Aligned_cols=200 Identities=11% Similarity=-0.018 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CChHh-HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL-PDVKN-CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTML 250 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 250 (729)
...+..+...|...|+.+++...+.+..+.... ++... .......+...|++++|.+.+++..+.. |.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 345556667777778888887777776654332 22222 2223445677888999999988887754 444444442 2
Q ss_pred HHHH----hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 004814 251 DSFC----KEGEMQEALELLWEMQGRGCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE 325 (729)
Q Consensus 251 ~~~~----~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 325 (729)
..+. ..+..+.+.+.+... .+..|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 2222 234555555555441 112333 3344455667778888888888888888875 3356677778888888
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 326 KGLLVEALNLEEEMVTRGVA-PTL--ATYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
.|++++|...+++....... |+. ..|..+...+...|++++|..++++....
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 88888888888887764321 222 23556777788888888888888887543
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=4.2e-07 Score=84.37 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=141.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
+++.+..|.+..++..|++++..-.++.|. +..-+..|..+|.+..++..|...++++-..- |
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~---------------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P 75 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR---------------SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--P 75 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--h
Confidence 345666678888899999988887777664 46667788999999999999999999998764 4
Q ss_pred ChHhHHH-HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 207 DVKNCNR-IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF--CKEGEMQEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 207 ~~~~~~~-ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
...-|.. -...+.+.+.+.+|+.+...|... ++...-..-+.+. ...+++..+..+.++....| +..+.+.
T Consensus 76 ~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in 149 (459)
T KOG4340|consen 76 ELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQIN 149 (459)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhcc
Confidence 4433432 467788899999999999988752 3332222223332 24678888888888876432 4455566
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 284 LITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
......+.|++++|.+-|+...+.+.-....+|+..+. ..+.|+++.|++...+++++|+.
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhh
Confidence 66667789999999999999988654445566765544 45678899999999999988754
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=9.7e-07 Score=82.01 Aligned_cols=291 Identities=13% Similarity=0.108 Sum_probs=197.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHH
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNT-MLDSFC 254 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~ 254 (729)
|+..+..+.+..++++|++++..-.+..+. +......+..+|....++..|-..|+++... .|...-|.. -.+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 445555667889999999999998887643 6666778888999999999999999999875 355444432 346667
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLI--TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (729)
+.+.+..|+.+...|... |+...-..-+ ....+.+++..++.+.++....| +..+.+.......+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 889999999999888653 2222211112 23345788888988888765433 566777777788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-------------CHh---------------
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-------------DII--------------- 384 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~--------------- 384 (729)
.+-|+...+-|--.....|+..+ ++.+.|+++.|++...+++++|++. |+.
T Consensus 164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 99999998854333566777544 4557899999999999999876531 211
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 385 SYNTLLYGYCRSGNIGEAFLLFDELRSRN-LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGS 463 (729)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (729)
.+|.-...+.+.|+++.|.+.+-.|..+. -..|++|...+.-. -..+++.+..+-+.-++..++ -...|+..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 11222223456777888877777775432 23456665544322 123455555555666666543 3456777777778
Q ss_pred HhcCCHHHHHHHHHH
Q 004814 464 CKMGNLSMAREFFNE 478 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~ 478 (729)
|+..-++.|-+++.+
T Consensus 321 CKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAE 335 (459)
T ss_pred hhhHHHhHHHHHHhh
Confidence 888877777777644
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.03 E-value=2.1e-05 Score=92.94 Aligned_cols=373 Identities=13% Similarity=0.000 Sum_probs=225.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh
Q 004814 247 NTMLDSFCKEGEMQEALELLWEMQGRGCSPNG-VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE 325 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 325 (729)
......+...|++.+|.......... +.. .............|+++.+...++.+.......+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 33445566677777777655443211 100 11112233445567887777777665221111122333444555667
Q ss_pred CCCHHHHHHHHHHHHHCCC------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHH
Q 004814 326 KGLLVEALNLEEEMVTRGV------APT--LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDI----ISYNTLLYGY 393 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~------~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~ 393 (729)
.|++++|...+......-. .+. ......+...+...|++++|...+++........+. ...+.+...+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 8899999988887754311 111 112223345566789999999999887763221222 2345566677
Q ss_pred HHcCCHHHHHHHHHHHhhC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHH
Q 004814 394 CRSGNIGEAFLLFDELRSR----NL-VPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ----GIL--P-DVITYTIMVN 461 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~ 461 (729)
...|++++|...+++.... |. .....++..+...+...|+++.|...+++.... +.. + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 8899999999988887542 11 111234455667788899999999988877652 211 1 2234455666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHH
Q 004814 462 GSCKMGNLSMAREFFNEMLRKG--LQPD--RFAYTTQIAGELKLGDTSEAYRLQEEMLAKG--FPPDLI--TY--NVLVH 531 (729)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~g--~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~~~--~~--~~li~ 531 (729)
.+...|++++|...+.+..... ..+. ...+..+...+...|+.++|...++...... ...... .. ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 7777899999999988876531 1111 2333445567778999999999888875421 111111 10 11223
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHH
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDH---ITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPT-LVTYTVLIHAH 603 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~ 603 (729)
.+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... |...+ ..++..+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 445578899998888776542211111 11345667788899999999999887653 32222 34566777788
Q ss_pred HHcCCHHHHHHHHHHHHHC
Q 004814 604 AARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~ 622 (729)
.+.|+.++|...+.++.+.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999875
No 101
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.02 E-value=6.4e-05 Score=80.75 Aligned_cols=523 Identities=14% Similarity=0.105 Sum_probs=295.5
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHH
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLL 181 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 181 (729)
++.+.|+.-...+.++++-.+...++.++ ++.+.|+.++|..+++..-...++ +..+...+..
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaL--sl~r~gk~~ea~~~Le~~~~~~~~---------------D~~tLq~l~~ 85 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKAL--SLFRLGKGDEALKLLEALYGLKGT---------------DDLTLQFLQN 85 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHH--HHHHhcCchhHHHHHhhhccCCCC---------------chHHHHHHHH
Confidence 46788998888888776433333334333 367899999999877765444433 5667888999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhH----HHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVK----AREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
+|...|..++|..+|+++.... |+......+..+|.+.+.+.+ |.++|+.. +-+.+.+=++++...+.-
T Consensus 86 ~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~-----pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 86 VYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNF-----PKRAYYFWSVISLILQSI 158 (932)
T ss_pred HHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CcccchHHHHHHHHHHhc
Confidence 9999999999999999999865 567777788888888887765 45555532 445555545555555421
Q ss_pred C----------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHH-HHHHhCCCccChhhHHHHHHHHHh
Q 004814 258 E----------MQEALELLWEMQGRG-CSPNGVTYNVLITGFSRNGELEQARGLI-RDMLKLGLKVSAHSYNPIICGYSE 325 (729)
Q Consensus 258 ~----------~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~ 325 (729)
. ..-|.+.++.+.+.+ ---+..-...-...+...|++++|.+++ ....+.-...+...-+.-+..+..
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 1 223566677776654 1112222233345566788999999998 344444334445555667788889
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------------cCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 004814 326 KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK----------------WGRVSDARHRFFEMLRKNVIPDIISYNTL 389 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 389 (729)
.+++.+-.++-.++..+|.. | |...++.+++ .+..+...+...+.... .....|-+-
T Consensus 239 l~~w~~l~~l~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~---~~Rgp~LA~ 311 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGS---KSRGPYLAR 311 (932)
T ss_pred hcChHHHHHHHHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcc---cccCcHHHH
Confidence 99999999999999988754 3 3333332221 12233333333333322 122334444
Q ss_pred HHHHH---HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---------HHHH
Q 004814 390 LYGYC---RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDV---------ITYT 457 (729)
Q Consensus 390 i~~~~---~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---------~~~~ 457 (729)
+.++. .-|+.+++.-.|-+ +.|..| .|..=+..|...=..+.-..++....... ++. .+.+
T Consensus 312 lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~ 384 (932)
T KOG2053|consen 312 LELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCV 384 (932)
T ss_pred HHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHH
Confidence 44444 34777776654432 222111 11111111111112222233333322211 111 1111
Q ss_pred HHHHHHHhcC-----CHHHHHHHHHHHH---HCC------CCCCHh---------hHHHHHHHHHhcCCHH---HHHHHH
Q 004814 458 IMVNGSCKMG-----NLSMAREFFNEML---RKG------LQPDRF---------AYTTQIAGELKLGDTS---EAYRLQ 511 (729)
Q Consensus 458 ~l~~~~~~~g-----~~~~A~~~~~~~~---~~g------~~~~~~---------~~~~li~~~~~~g~~~---~A~~l~ 511 (729)
..+..+ .| +.+.-..+++++. ++| +.|... +.+.++..+.+.++.. +|+-++
T Consensus 385 l~~~rl--~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LL 462 (932)
T KOG2053|consen 385 LLLLRL--LGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLL 462 (932)
T ss_pred HHHHHH--hhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 111111 12 1223333332222 122 223322 3345667788877754 566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 512 EEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSP 591 (729)
Q Consensus 512 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 591 (729)
+...... +.|..+--.+|..|+-.|-+..|.++++.+--..+..|...|. +..-+...|++..+...++...+.--..
T Consensus 463 E~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~ 540 (932)
T KOG2053|consen 463 ENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSS 540 (932)
T ss_pred HHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhh
Confidence 6666553 5566677788999999999999999999887666665655443 3345667889999999998877641011
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYF---SEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILP--NKYTY 666 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~---~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~ 666 (729)
-..+-..+..+| +.|.+.+..++. +++...-......+=+..++..+..++.++-...+..|. ++| |...|
T Consensus 541 ~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~---l~~~e~~I~w 616 (932)
T KOG2053|consen 541 LKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK---LPPSEDRIQW 616 (932)
T ss_pred hhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc---cCcchhhccc
Confidence 122222333333 456665554433 333322111122234667777888888888888877776 333 33345
Q ss_pred HHHH
Q 004814 667 TILI 670 (729)
Q Consensus 667 ~~l~ 670 (729)
..+.
T Consensus 617 ~~L~ 620 (932)
T KOG2053|consen 617 VSLS 620 (932)
T ss_pred cccc
Confidence 5554
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.97 E-value=1.6e-05 Score=75.64 Aligned_cols=320 Identities=14% Similarity=0.054 Sum_probs=192.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+-++.-.--+...+...|.+..|+.-+..+++.+|. +...+..-+..|...|+-.-|+.-+.+.+
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~---------------~Y~aifrRaT~yLAmGksk~al~Dl~rVl 99 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN---------------NYQAIFRRATVYLAMGKSKAALQDLSRVL 99 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch---------------hHHHHHHHHHHHhhhcCCccchhhHHHHH
Confidence 456666777888888899999999999999988887 33344445667888888899999999988
Q ss_pred HCCCCCChHhH-HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004814 201 RNGLLPDVKNC-NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGV 279 (729)
Q Consensus 201 ~~~~~~~~~~~-~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 279 (729)
+. .||-..- ..-..++.++|.+++|..=|+.+++.. |+..+- ..++.+.--.++-.
T Consensus 100 el--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~---------------- 156 (504)
T KOG0624|consen 100 EL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW---------------- 156 (504)
T ss_pred hc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------
Confidence 85 4665432 234567889999999999999988764 322111 01111100000000
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC 359 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 359 (729)
.....+..+...|+...|+.....+++.. +.|...|..-..+|...|++..|+.-++...+..-. +..++--+-..+.
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y 234 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHH
Confidence 01111222334455555555555555442 335555555555555555555555544444333211 3334444445555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHH----H---------HHHHHHcCCHHHHHHHHHHHhhCCCCCCHhh---HHH
Q 004814 360 KWGRVSDARHRFFEMLRKNVIPDIISYNT----L---------LYGYCRSGNIGEAFLLFDELRSRNLVPTVVT---YNT 423 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l---------i~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~ 423 (729)
..|+.+.++....+.++.+ ||...+.. + +......+++.++++-.+...+......... +..
T Consensus 235 ~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 5555555555555555533 33221111 0 1223456677777777777666543322333 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 424 LIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 424 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 483 (729)
+-.++...+++.+|++...++++.. +.|+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 5566677788999999999888763 4458888888888888889999999999888763
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.94 E-value=7.1e-06 Score=96.93 Aligned_cols=336 Identities=16% Similarity=0.089 Sum_probs=199.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCC------CCC--HhhHHHHHHHH
Q 004814 357 GLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNL------VPT--VVTYNTLIDGL 428 (729)
Q Consensus 357 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~------~~~--~~~~~~ll~~~ 428 (729)
.+...|+++.+...+..+.......+..........+...|++++|...+.+....-- .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3445677777666665542211112222233444555677888888888877644210 111 11122233445
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHhhHHHHHHHHH
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDV----ITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ---P--DRFAYTTQIAGEL 499 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~---~--~~~~~~~li~~~~ 499 (729)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.....-. + .......+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6788888888888887763112121 23455666677788999888888877653111 1 1223444556677
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHH
Q 004814 500 KLGDTSEAYRLQEEMLAK----GFP---PDLITYNVLVHGLCKLGSLEEANELLRKMVGDG--FIP--DHITYTSIIHAS 568 (729)
Q Consensus 500 ~~g~~~~A~~l~~~~~~~----~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~l~~~~ 568 (729)
..|++++|...+++.... +.. .....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 889999988888776542 211 122334455666777799999988888775431 111 223444556677
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCChhhH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 004814 569 LEMGDLRRGRDLFNNMLRKGL-SPTLVTY-----TVLIHAHAARGRLELAFMYFSEMQVKGIRPNV---ITYNALINGLC 639 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~ 639 (729)
...|++++|.+.++.+..... ......+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788999999888887754310 0111111 11223445678888888887765542111111 11345667788
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 640 RLRRIDQAYGLFIDMEEE----GILPN-KYTYTILINENCNAGNWQEALRLYKEMLDR 692 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 692 (729)
..|+.++|...++++... |...+ ..++..+..++.+.|+.++|...+.++++.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999998888887652 32222 235666777888899999999999888853
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.94 E-value=8.5e-06 Score=77.44 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=128.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 462 GSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEE 541 (729)
Q Consensus 462 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 541 (729)
.+...|+...|++....+++.. ..|...+..-..+|...|++..|+.-+....+.. ..+...+.-+-..+...|+.+.
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~ 241 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAEN 241 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHH
Confidence 3456788888888888888863 3466777777788888888888888887776653 4456666667777888888888
Q ss_pred HHHHHHHHHhCCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCChhh---HHHHHHHHHH
Q 004814 542 ANELLRKMVGDGFIPDHIT----YTSI---------IHASLEMGDLRRGRDLFNNMLRKGLSPTLVT---YTVLIHAHAA 605 (729)
Q Consensus 542 A~~~~~~~~~~~~~p~~~~----~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 605 (729)
++...++.++. .||... |..+ +......+++.++.+-.+..++......... +..+-.++..
T Consensus 242 sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 242 SLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc
Confidence 88888888875 455432 2111 1123455667777777776666531111222 2334455666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 606 RGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.|++.+|++...+.++. .|+ ..++.--..+|.-...+|+|+.-|+++.+.
T Consensus 320 d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77788888888887764 444 667777777787777888888888887774
No 105
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=1.8e-06 Score=86.17 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=149.8
Q ss_pred hcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 136 ESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS-MVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
..++.++|+.+..+++..+|. +..+|..-..++.+.| .+++++..++++.+..++ +..+|+..
T Consensus 49 ~~e~serAL~lt~~aI~lnP~---------------~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R 112 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG---------------NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHR 112 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch---------------hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHH
Confidence 446778889999999988887 3556666666666667 679999999999998766 66678877
Q ss_pred HHHHHHCCCh--hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-
Q 004814 215 IKVLRDNGFS--VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRN- 291 (729)
Q Consensus 215 l~~l~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~- 291 (729)
..++.+.|+. +++..+++++++.. +-|..+|+....++.+.|+++++++.++++.+.+.. |..+|+.....+.+.
T Consensus 113 ~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 113 RWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 7777777763 67889998998876 668889999999999999999999999999987533 667777766555544
Q ss_pred --CCH----HHHHHHHHHHHhCCCccChhhHHHHHHHHHhC----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 292 --GEL----EQARGLIRDMLKLGLKVSAHSYNPIICGYSEK----GLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360 (729)
Q Consensus 292 --g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 360 (729)
|.. +++.+...++++.. +-|..+|+-+...+... ++..+|.+.+.+....++. +......|++.|+.
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 222 45666666777665 34777888887777763 3445677777776654332 55666667777764
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.90 E-value=0.00013 Score=74.05 Aligned_cols=151 Identities=9% Similarity=0.017 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 504 TSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIP-DHITYTSIIHASLEMGDLRRGRDLFN 582 (729)
Q Consensus 504 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 582 (729)
.+.....++++...-...-..+|..+++.-.+..-+..|..+|.++.+.+..+ ++.++++++.-+| .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44444555555444222233456666666666666777777777777766555 5556666666554 466777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 583 NMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN--VITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 583 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.-+++- ..++.--...++-+...++-..|..+|++....++.|+ ..+|..++.-=..-|++..+.++-+++..
T Consensus 426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 655541 23344445556666777777777777777777655554 34677777777777777777777766654
No 107
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=3e-06 Score=84.63 Aligned_cols=215 Identities=12% Similarity=0.046 Sum_probs=150.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNG-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
+++.+-.++...++.++|+...+++++..+. +..+|+....++.+.| .+++++..++++.+.+ +.+..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 3334444556677889999999999987655 5667887777788877 5799999999998876 55666787766666
Q ss_pred HhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC---CC
Q 004814 254 CKEGEM--QEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK---GL 328 (729)
Q Consensus 254 ~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~ 328 (729)
.+.|+. ++++.+++++.+.. +-|..+|+...-.+...|+++++.+.++++++.++. +..+|+.....+.+. |.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 666653 67888888888763 346778888888888889999999999999987643 677777776665544 22
Q ss_pred H----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 004814 329 L----VEALNLEEEMVTRGVAPTLATYNILIYGLCKW----GRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR 395 (729)
Q Consensus 329 ~----~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (729)
. +++++...+++...+. |...|+-+...+... ++..+|.+.+.+....++ .+......|++.|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 2 4566666666665443 666777666666652 334556666666555443 455566666666654
No 108
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=1.1e-07 Score=93.70 Aligned_cols=249 Identities=16% Similarity=0.092 Sum_probs=100.1
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 392 GYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSM 471 (729)
Q Consensus 392 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (729)
-+.-.|++..++.-.+ ........+......+.+++...|+.+.+. .++.+.. .|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3444566666664444 222221122333444555666666555432 2222222 4444444444433332233333
Q ss_pred HHHHHHHHHHCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 472 AREFFNEMLRKGLQP-DRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 472 A~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 550 (729)
++.-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333322221111 1111111123344455555555554321 234444445555555555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004814 551 GDGFIPDHITYTSIIHAS----LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 551 ~~~~~p~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 626 (729)
+.. .|. +...+..++ ...+.+++|..+|+++... .++++.+.+.+..++...|++++|.+++.+..+.+..
T Consensus 159 ~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 432 222 122222221 1122355555555554433 2344555555555555555555555555555443211
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRI-DQAYGLFIDMEE 656 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 656 (729)
++.+...++.+....|+. +.+.+++.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 333444444444444444 334444444444
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=6.9e-07 Score=90.89 Aligned_cols=218 Identities=17% Similarity=0.130 Sum_probs=94.9
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
.+.|.+.+|.-.|+..++..+. +..+|-.|...-...++=..|+..+++..+.. +.|..+...|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 3444445555555555444433 44444444444444444444444444444443 334444444444455555444555
Q ss_pred HHHHHHHhCCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 264 ELLWEMQGRGCS--------PNGVTYNVLITGFSRNGELEQARGLIRDML-KLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 264 ~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
+.|+......++ ++...-+. ..+.....+....++|-++. ..+..+|+.+...|.-.|--.|+++.|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 554444332100 00000000 00011111222233333332 22223445555555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 335 LEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPD-IISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
.|+..+...+. |...||-|...++...+.++|+..|.+.++.. |+ +.+...|.-.|...|.+++|.+.|-+
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 55555554332 44455555555555555555555555555432 22 22333344445555555555554443
No 110
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.82 E-value=0.00024 Score=72.11 Aligned_cols=428 Identities=14% Similarity=0.113 Sum_probs=242.6
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccC
Q 004814 233 MMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVS 312 (729)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 312 (729)
+-++.+ +-|..+|+.||+-+-.+ .++++.+.++++... ++-....|..-|..-.+.++++..+.+|.+-+..- .+
T Consensus 11 ~rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--Ln 85 (656)
T KOG1914|consen 11 ERIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LN 85 (656)
T ss_pred HHHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hh
Confidence 334444 67899999999977655 999999999999876 45566788888999999999999999999988763 35
Q ss_pred hhhHHHHHHHHHh-CCCHHH----HHHHHHHH-HHCCCCCCH-HHHHHHHHH---------HHhcCCHHHHHHHHHHHHH
Q 004814 313 AHSYNPIICGYSE-KGLLVE----ALNLEEEM-VTRGVAPTL-ATYNILIYG---------LCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 313 ~~~~~~li~~~~~-~g~~~~----A~~~~~~m-~~~g~~p~~-~~~~~li~~---------~~~~g~~~~A~~~~~~~~~ 376 (729)
...|...+.--.+ .|+... ..+.|+-. .+.|+.+-. ..|+..+.. +..+.+++..++++.+++.
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 6667666654332 222222 22233322 233433222 234444332 2333445555566666654
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCC--
Q 004814 377 KNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN--QGILPD-- 452 (729)
Q Consensus 377 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~-- 452 (729)
.-+..=...|+.... .... .|..|-.-++ --+...+..|.++++++.. .|....
T Consensus 166 tPm~nlEkLW~DY~~-----------------fE~~---IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~ 223 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEA-----------------FEQE---INIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAP 223 (656)
T ss_pred CccccHHHHHHHHHH-----------------HHHH---HHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 322111122222111 1000 0111111110 0111223333444333322 111000
Q ss_pred -------------HHHHHHHHHHHHhcCCH---------HHHHHHHHHHH-HCCCCCCHhhHHH-H----HHHHHhcCC-
Q 004814 453 -------------VITYTIMVNGSCKMGNL---------SMAREFFNEML-RKGLQPDRFAYTT-Q----IAGELKLGD- 503 (729)
Q Consensus 453 -------------~~~~~~l~~~~~~~g~~---------~~A~~~~~~~~-~~g~~~~~~~~~~-l----i~~~~~~g~- 503 (729)
...|..+|..- +.+.. ....-++++.+ -.+..|+..-... . -+.+...|+
T Consensus 224 ~vp~~~T~~e~~qv~~W~n~I~wE-ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~ 302 (656)
T KOG1914|consen 224 AVPPKGTKDEIQQVELWKNWIKWE-KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDV 302 (656)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHH-hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhccc
Confidence 01122222211 11100 01111122211 1122222211100 0 012222333
Q ss_pred ------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 504 ------TSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL---GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDL 574 (729)
Q Consensus 504 ------~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (729)
.+++..+++..+..-...+...|..+.+---.. ...+.....+++++......-.-+|..+++.-.+..-+
T Consensus 303 ~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGl 382 (656)
T KOG1914|consen 303 PDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGL 382 (656)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhH
Confidence 456666666665543333444444444322111 13556667777776543332334677888888888889
Q ss_pred HHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 575 RRGRDLFNNMLRKGLSP-TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFID 653 (729)
Q Consensus 575 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 653 (729)
+.|..+|.++.+.+..+ ++.++++++.-|| .++.+-|.++|+--+++ ...++..-...++-+...|+-..|..+|++
T Consensus 383 kaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 383 KAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 99999999999886555 7778888888666 57889999999987775 333455557788889999999999999999
Q ss_pred HHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 654 MEEEGILPNK--YTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 654 m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+..++.|+. .+|..++.--..-|+...++++-+++.
T Consensus 461 ~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 461 VLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9998767664 589999998889999999999988876
No 111
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.81 E-value=7.2e-07 Score=90.78 Aligned_cols=252 Identities=13% Similarity=0.033 Sum_probs=153.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 506 (729)
-+.+.|++.+|.-.|+..++.+ +-+...|..|.......++-..|+..+++.++.... +......|...|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 3456677777777777777765 446777777777777777777777777777776332 45566666677777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDLITYNVLV-------HGLCKLGSLEEANELLRKMV-GDGFIPDHITYTSIIHASLEMGDLRRGR 578 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 578 (729)
|++.++.-+....+ -...-..-. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|++++|.
T Consensus 372 Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 77777776554211 000000000 01111112333444444433 3343456667777777777778888888
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 579 DLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI-TYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
+.|+.++... |.|..+||.|+..++...+.++|+..|.++++. .|.-+ ....|+-.|...|.+++|.+.|-+++..
T Consensus 451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 8888777764 556777888888888777888888888888774 45432 3344555677778888887777666531
Q ss_pred ---C------CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 658 ---G------ILPNKYTYTILINENCNAGNWQEALR 684 (729)
Q Consensus 658 ---g------~~p~~~~~~~l~~~~~~~g~~~~A~~ 684 (729)
+ ..++..+|.+|=.++...++.+-+.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 1 11123456665555555565554433
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.75 E-value=5.4e-07 Score=88.72 Aligned_cols=256 Identities=17% Similarity=0.099 Sum_probs=148.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 004814 426 DGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTS 505 (729)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 505 (729)
+-+.-.|++..++.-.+ ........+......+.+++...|+.+.++ .++.+. -.|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 33444677777775554 222221223445556677777788766543 333332 2455555555544444434555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 506 EAYRLQEEMLAKGFPP-DLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 506 ~A~~l~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
.++.-+++........ +..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555444333222 2233333334556678888888777542 25566667777888888888888888888
Q ss_pred HHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 585 LRKGLSPTLVTYTVLIHAHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 585 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
.+.+ .| .+...+..++.. .+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.+..+.+ +
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 7653 33 333344444332 23578888888887665 45677788888888888888888888888877654 4
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHH
Q 004814 661 PNKYTYTILINENCNAGNW-QEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 661 p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~pd~~ 699 (729)
-++.+...++-+....|+. +.+.+++.++. ...|+++
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~--~~~p~h~ 270 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLK--QSNPNHP 270 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH--HHTTTSH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHH--HhCCCCh
Confidence 4555666777777777777 66677777776 3455543
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.71 E-value=4.6e-06 Score=87.27 Aligned_cols=220 Identities=19% Similarity=0.200 Sum_probs=178.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL 529 (729)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l 529 (729)
+|--..-..+...+.+.|-...|..+++++. .+..++.+|...|+..+|..+..+.+++ +|+...|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 3444455667788889999999999998764 4567788999999999999998888874 8899999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCH
Q 004814 530 VHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRL 609 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 609 (729)
.+......-+++|.++.+..... .-.++.....+.++++++.+.|+.-.+.+ +--..+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 99888777789999888765432 11222223345789999999999888775 55677899999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 610 ELAFMYFSEMQVKGIRP-NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 610 ~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
..|.+.|...... .| +...||.+-.+|.+.|+..+|...+++..+.+ ..+...|...+-...+-|.+++|++.+.+
T Consensus 536 q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 536 QAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred HHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999875 44 56689999999999999999999999999876 44556676667777899999999999999
Q ss_pred HHH
Q 004814 689 MLD 691 (729)
Q Consensus 689 m~~ 691 (729)
+++
T Consensus 613 ll~ 615 (777)
T KOG1128|consen 613 LLD 615 (777)
T ss_pred HHH
Confidence 984
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=7e-06 Score=85.96 Aligned_cols=285 Identities=15% Similarity=0.099 Sum_probs=199.0
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH---H---hccchhhhHHHhhcCCCC-cchHHHHHH
Q 004814 106 IALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETV---V---CVNMHGILDVLIGGGLSS-CVSIKILDL 178 (729)
Q Consensus 106 ~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~---~---~~~~~~~~~~l~~~~~~~-~~~~~~~~~ 178 (729)
.-.-+|..+..+.+..-...+...+.+.+.+.++-+...+-+.++ . +....++.+.+...+... +.-..+-..
T Consensus 324 ~l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~ 403 (777)
T KOG1128|consen 324 ELEPLTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRL 403 (777)
T ss_pred HHHHHHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHH
Confidence 344678888777766667788888999888877655433332222 2 111111222221111111 122344557
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
++..+...|....|+.+|++.-. |--++-+|...|+...|..+..+..+. +|+...|..++++.....-
T Consensus 404 laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 88888899999999999987643 456778888888888888888887774 7888888888888877777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 259 MQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEE 338 (729)
Q Consensus 259 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (729)
+++|.++.+....+ +-..+.....+.++++++.+.|+.-.+.. +....+|..+..+..+.+++..|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 88888888765432 22222233344788888888888877764 34567788888888888888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 339 MVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 339 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
.....+. +...||.+-.+|.+.|+-.+|...+.+..+.+ ..+...|-..+....+.|.+++|++.+.++..
T Consensus 545 cvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 545 CVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 7775333 56788888888888888888888888888876 35666777777777888888888888877755
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1.9e-05 Score=88.27 Aligned_cols=232 Identities=14% Similarity=0.112 Sum_probs=137.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 004814 418 VVTYNTLIDGLCRYGDLEVAQQLKENMINQ-GIL---PDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTT 493 (729)
Q Consensus 418 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 493 (729)
...|...|.-....++.++|+++.++++.. ++. --...|.++++.-...|.-+...++|+++.+. ......|..
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLK 1535 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHH
Confidence 344444455555555555555555555542 111 11234555555555556556666666666654 112344555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 004814 494 QIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIP-DHITYTSIIHASLEMG 572 (729)
Q Consensus 494 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 572 (729)
|...|.+.+..++|.++++.|.++ +......|...++.+.+..+-+.|..++.++++.-++. ........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 666666666666666666666665 23456677777777777777777777777776653221 1233444455566777
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV--ITYNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~ 650 (729)
+.+++..+|+..+... |-....|+..++.-.++|+.+.+..+|+++...++.|.. ..|...+..--..|+-+.+..+
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 7777777777777653 445667777777777777777777777777777666543 2455555544455654444333
Q ss_pred HHH
Q 004814 651 FID 653 (729)
Q Consensus 651 ~~~ 653 (729)
=.+
T Consensus 1694 Kar 1696 (1710)
T KOG1070|consen 1694 KAR 1696 (1710)
T ss_pred HHH
Confidence 333
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.65 E-value=6.2e-06 Score=76.13 Aligned_cols=166 Identities=16% Similarity=0.088 Sum_probs=130.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
|.|... ..+...+...|+-+....+........ ..|.......+....+.|++.+|...+++..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334444 556667777888888777777755442 3466677778888899999999999999988775 7889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNW 679 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 679 (729)
.-+|.+.|+.++|..-|.+..+.-. -++..++.+...|.-.|+.+.|..++......+ .-|..+-..+..+....|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 9999999999999999999988632 256677888888888999999999999888764 44666777788888899999
Q ss_pred HHHHHHHHHHH
Q 004814 680 QEALRLYKEML 690 (729)
Q Consensus 680 ~~A~~~~~~m~ 690 (729)
++|..+..+-+
T Consensus 219 ~~A~~i~~~e~ 229 (257)
T COG5010 219 REAEDIAVQEL 229 (257)
T ss_pred HHHHhhccccc
Confidence 99998876643
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=2.3e-05 Score=87.59 Aligned_cols=204 Identities=13% Similarity=0.048 Sum_probs=104.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHH
Q 004814 243 IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPN-----GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYN 317 (729)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 317 (729)
...|-..+......++.++|++++++.... +.+. .-.|.++++.-...|.-+...++|+++.+.. ..-..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 445555566666666666666666665543 2111 1234444444444455555556666655532 1123455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHc
Q 004814 318 PIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-DIISYNTLLYGYCRS 396 (729)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 396 (729)
.|...|.+.++.++|-++++.|.+. +.-....|...+..+.++.+-+.|..++.+.++.-++. ........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 5555666666666666666666554 22244555555666666655556666665555532211 122223333444455
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 397 GNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILP 451 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 451 (729)
|+.+.+..+|+...... +--...|+..++.-.+.|+.+.++.+|++++..++.+
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 55555555555554432 2234455555555555555555555555555554433
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=5.8e-06 Score=76.88 Aligned_cols=117 Identities=12% Similarity=0.119 Sum_probs=76.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 004814 571 MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGL-CRLRR--IDQA 647 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~-~~~g~--~~~A 647 (729)
.++.+++...++..++.+ +.|...|..+...|...|++++|...|++..+... .+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 455566666666666554 55666777777777777777777777777776532 2555666666653 45555 4777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 648 YGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 648 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+++++..+.+ +.+...+..+...+.+.|++++|+..|++++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777777653 4455666777777777777777777777776
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.61 E-value=6.7e-06 Score=79.77 Aligned_cols=191 Identities=9% Similarity=-0.061 Sum_probs=131.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
......+...+..+...|++++|...+++++...|.. ......+..++.+|.+.|++++|+..+++++
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l 97 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS------------PYAEQAQLDLAYAYYKSGDYAEAIAAADRFI 97 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------------hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3456778888888999999999999999988877652 1124567778899999999999999999999
Q ss_pred HCCCCCCh--HhHHHHHHHHHHC--------CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 201 RNGLLPDV--KNCNRIIKVLRDN--------GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 201 ~~~~~~~~--~~~~~ll~~l~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
+..+.... .++..+..++.+. |++++|.+.|+.+.+.. +.+...+..+..... .... ..
T Consensus 98 ~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~------~~ 166 (235)
T TIGR03302 98 RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR------LA 166 (235)
T ss_pred HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH------HH
Confidence 87653221 2455556666554 67888999998888753 223333322221110 0000 00
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--ccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 271 GRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL--KVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 271 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.....+...+.+.|++++|...++..++... +.....+..+...+.+.|++++|.+.++.+..+
T Consensus 167 --------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 --------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112456678888999999998888887532 223567888888899999999999888887765
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.61 E-value=7e-06 Score=75.81 Aligned_cols=125 Identities=17% Similarity=0.121 Sum_probs=55.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
..+.++....+.|++.+|...|.+.... -++|..+|+.+.-+|.+.|++++|+.-|.+..+.. .-++...+.+.-.|.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~ 179 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLL 179 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHH
Confidence 3333444444444444444444444433 23344444444444444444444444444444432 113334444444444
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFF 372 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (729)
-.|+.+.|..++......+.. |...-..|.......|++++|.++..
T Consensus 180 L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 180 LRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred HcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 444444444444444443222 33333334444444455555544433
No 121
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.60 E-value=7e-06 Score=79.64 Aligned_cols=184 Identities=13% Similarity=-0.014 Sum_probs=111.3
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHH
Q 004814 487 DRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL---ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDH--ITY 561 (729)
Q Consensus 487 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~ 561 (729)
....+......+.+.|++++|...++++.... |.+. .++..+..++.+.|++++|...++++++..+.... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 34555666667777777777777777776652 2222 35566677777777777777777777765432111 134
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 562 TSIIHASLEM--------GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNA 633 (729)
Q Consensus 562 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 633 (729)
..+..++... |+.++|.+.++.+.... +.+...+..+..... ... ... .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~~--------~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RLA--------GKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HHH--------HHHHH
Confidence 4444445443 56667777777776652 222222222111100 000 000 01124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 634 LINGLCRLRRIDQAYGLFIDMEEEGI--LPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 634 l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+...+.+.|++++|+..+++..+..- +.....+..++.++.+.|++++|..+++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56678889999999999999887521 1234678888999999999999999888886
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.60 E-value=2.8e-06 Score=93.49 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=137.0
Q ss_pred ChHHHH-HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHH
Q 004814 103 KPRIAL-RFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLL 181 (729)
Q Consensus 103 ~~~~al-~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~ 181 (729)
.|..++ +..+.++ .+.+++.++-.+..+..+.|++++|..+++.+++..|+ +...+..++.
T Consensus 67 ~~~~~~~~~~~~~~---~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---------------~~~a~~~~a~ 128 (694)
T PRK15179 67 KPAAALPELLDYVR---RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---------------SSEAFILMLR 128 (694)
T ss_pred chHhhHHHHHHHHH---hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---------------cHHHHHHHHH
Confidence 455555 3344444 35688999999999999999999999999999999987 5677888999
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (729)
++.+.+++++|+..+++.+...+. +....+.+..++.+.|++++|..+|+++...+ +.+..++..+...+.+.|+.++
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999998765 67778889999999999999999999999854 5568899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLI 285 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li 285 (729)
|...|++..+. ..|....|+..+
T Consensus 207 A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 207 ARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHh-hCcchHHHHHHH
Confidence 99999999876 345556665544
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.58 E-value=7.4e-08 Score=59.99 Aligned_cols=32 Identities=53% Similarity=1.022 Sum_probs=16.8
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
|+.||..|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=3.5e-06 Score=74.03 Aligned_cols=118 Identities=14% Similarity=0.003 Sum_probs=80.0
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 579 DLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
.++++.++. .|+ .+..+...+...|++++|...|+.+.... +.+...|..++.++.+.|++++|...|+++.+.+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555543 233 24455666777777777777777777653 2356677777777777788888888887777753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 659 ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 659 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+.+...+..++.++...|++++|+..|++++ ...|+...+...
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al--~~~p~~~~~~~~ 131 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAI--KMSYADASWSEI 131 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHH
Confidence 4566677777777777788888888887777 566666555544
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.56 E-value=9.1e-08 Score=59.58 Aligned_cols=32 Identities=53% Similarity=0.814 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.54 E-value=3e-06 Score=78.76 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=74.8
Q ss_pred cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 004814 137 SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIK 216 (729)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 216 (729)
.+..+++...+++.++.+|+ +...|..|+..|...|++++|+..|+++.+..+. +...+..+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~---------------~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ---------------NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44455566666666666655 4556666677777777777777777777666544 5555555665
Q ss_pred HH-HHCCC--hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 217 VL-RDNGF--SVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 217 ~l-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
++ ...|+ .++|.+++++..+.+ +.+..++..+...+.+.|++++|...++++.+.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 53 45555 366666666666655 445666666666666666666666666666655
No 127
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.51 E-value=6.8e-06 Score=72.16 Aligned_cols=93 Identities=8% Similarity=-0.154 Sum_probs=72.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
.++..+...|++++|...|++++...+. +...+..+..++.+.|++++|...|+...+.+ +.+..++..+..++.+.|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 4566777888888888888888877654 66777778888888888888888888887765 567777788888888888
Q ss_pred CHHHHHHHHHHHHhC
Q 004814 258 EMQEALELLWEMQGR 272 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~ 272 (729)
++++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888887775
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.50 E-value=6.1e-05 Score=83.83 Aligned_cols=238 Identities=12% Similarity=0.054 Sum_probs=149.2
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 381 PDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV-VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIM 459 (729)
Q Consensus 381 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 459 (729)
.+...+..|+..+...+++++|.++.++..+.. |+. ..|-.+...+.+.++.+++..+ .+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~ 89 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL-----------------NL 89 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence 345667778888888888888888887666543 333 3333333355555554444433 22
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 460 VNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSL 539 (729)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 539 (729)
+.......++.....++..+.+.+ -+..++..+..+|.+.|+.++|..+++++++.+ +.|+.+.|.+...|... ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 233333334433333444444432 234467777788888888888888888888876 66788888888888887 88
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
++|++++.+++.. +...+++..+.++|.++.... +.+...+..+. +.+
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~----------------~ki 213 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIE----------------RKV 213 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHH----------------HHH
Confidence 8888888777653 555667888888888887763 22333322222 222
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004814 620 QVK-GIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENC 674 (729)
Q Consensus 620 ~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 674 (729)
... |..--..++..+...|....++++++.+++.+.+.. +-|.....-++.+|.
T Consensus 214 ~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 214 LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 221 122233455666677788888899999999888864 446666677777665
No 129
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.46 E-value=6.6e-05 Score=83.55 Aligned_cols=221 Identities=10% Similarity=0.070 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHH------
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLV------ 195 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------ 195 (729)
.+..++..|+..+...+++++|..+++..++..|.. ...|..++..|...++.+++..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~---------------i~~yy~~G~l~~q~~~~~~~~lv~~l~~~ 93 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS---------------ISALYISGILSLSRRPLNDSNLLNLIDSF 93 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc---------------eehHHHHHHHHHhhcchhhhhhhhhhhhc
Confidence 356777888888888888888888888777777663 33333344455555554444433
Q ss_pred ------------HHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 196 ------------FNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 196 ------------~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
...+.+.+ -+..++..++.+|.+.|+.++|..+|+++++.. +.|+.+.|-+...|... ++++|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred ccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222211 122233444444444455555555555554444 34444444444444444 444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC-
Q 004814 264 ELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR- 342 (729)
Q Consensus 264 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 342 (729)
+++.+.... +...+++.++.+++.++....+ .+.+.-..+.+.+...
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhh
Confidence 444444332 2222233333333333332211 1122222222222221
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC 394 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (729)
|..--+.++-.+-..|-+.++++++..+++.+++... .|.....-++..|.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNKAREELIRFYK 268 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchhhHHHHHHHHH
Confidence 2222334444455566666667777777777766554 34455555555544
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=8.3e-05 Score=82.08 Aligned_cols=134 Identities=12% Similarity=0.055 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
+.+...+..|.....+.|++++|..+++...+..+. +......+...+.+.+++++|+...++..... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 334444445555555555555555555555443211 22334444444555555555555555554443 3334444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555554421 11244444455555555555555555555544
No 131
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00023 Score=65.88 Aligned_cols=139 Identities=13% Similarity=0.084 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---
Q 004814 355 IYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRY--- 431 (729)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~--- 431 (729)
...|+..|++++|++..... .+......=+..+.+..+++-|.+.+++|.+.. +..|.+.|..++.+.
T Consensus 115 a~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 34455666666666555441 122222222333445555666666666665542 445555555554432
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 004814 432 -GDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT 504 (729)
Q Consensus 432 -g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 504 (729)
+...+|.-+|++|.++ .+|+..+.+..+.++...|++++|..++++++.+... ++.+...++.+-...|..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 3456666666666553 4556666666666666666666666666666665332 444555555444444443
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.0002 Score=66.26 Aligned_cols=149 Identities=19% Similarity=0.139 Sum_probs=69.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----c
Q 004814 531 HGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA----R 606 (729)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 606 (729)
..|++.|++++|++.+.... +......=...+.+..+.+-|.+.+++|.+. .+..|.+-|..++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 34555555555555544311 1122222223344445555555555555543 234444444444432 2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HHHH
Q 004814 607 GRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQE-ALRL 685 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~-A~~~ 685 (729)
+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++++..+. ..++.+...++-.-...|+-.+ -.+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 3455555555555553 34555555555555555555555555555555543 3344444444443334443322 2334
Q ss_pred HHHHH
Q 004814 686 YKEML 690 (729)
Q Consensus 686 ~~~m~ 690 (729)
+.++.
T Consensus 265 l~QLk 269 (299)
T KOG3081|consen 265 LSQLK 269 (299)
T ss_pred HHHHH
Confidence 44443
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.36 E-value=1.6e-05 Score=69.48 Aligned_cols=98 Identities=11% Similarity=0.053 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
......++..|.+.|++++|...|+++...++. +...+..+...+.+.|++++|...|+...+.+ +.+...+..+...
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 445566777788888888888888888776644 66677777888888888888888888877765 5566777777778
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 004814 253 FCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~ 272 (729)
+...|++++|.+.|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888877775
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.34 E-value=1.6e-05 Score=69.38 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=71.9
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 581 FNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
+++++... +.+......+...+...|++++|.+.++++...+ +.+...+..+...+.+.|++++|...+++..+.+ +
T Consensus 6 ~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 6 LKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred HHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 44444432 2234445556666667777777777777766643 2255666667777777777777777777766653 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 661 PNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 661 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
.+...+..+..++...|++++|...+++.+ ...|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAI--EICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hhccccch
Confidence 455666666777777777777777777776 34454433
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00023 Score=71.72 Aligned_cols=138 Identities=20% Similarity=0.230 Sum_probs=99.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004814 498 ELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPD-HITYTSIIHASLEMGDLRR 576 (729)
Q Consensus 498 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 576 (729)
+...|++++|+..++.+++. .|.|+..+....+.+.+.++..+|.+.+++++... |+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHH
Confidence 44556677777777776655 35566666777778888888888888888888763 44 5566667778888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 577 GRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 577 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
|..+++...... +.|+..|..|..+|...|+..+|..-.. .+|...|++++|+..+....+
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHH
Confidence 888888777664 6678888888888888887776664433 345667888888888877776
Q ss_pred c
Q 004814 657 E 657 (729)
Q Consensus 657 ~ 657 (729)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 5
No 136
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.29 E-value=0.00037 Score=70.32 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=121.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHc
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT-LVTYTVLIHAHAAR 606 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 606 (729)
.....+...|++++|+..++.+++.. +-|+..+......+.+.++.++|.+.++++... .|+ ....-.+..+|.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 34445567899999999999998874 235666667778899999999999999999987 355 67778889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 607 GRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLY 686 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 686 (729)
|++.+|+++++..... .+-|+..|..|..+|...|+..+|..-..+ .|...|++++|+..+
T Consensus 388 g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l 448 (484)
T COG4783 388 GKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFL 448 (484)
T ss_pred CChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHH
Confidence 9999999999999887 345889999999999999999888765544 355689999999999
Q ss_pred HHHHHCCCCCCHHHH
Q 004814 687 KEMLDREIEPDYCTH 701 (729)
Q Consensus 687 ~~m~~~~~~pd~~~~ 701 (729)
..+.+. .+++..+|
T Consensus 449 ~~A~~~-~~~~~~~~ 462 (484)
T COG4783 449 MRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHh-ccCCcHHH
Confidence 998753 33344433
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=0.00089 Score=61.62 Aligned_cols=189 Identities=16% Similarity=0.165 Sum_probs=123.7
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 465 KMGNLSMAREFFNEMLRK---G-LQPDRFA-YTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSL 539 (729)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~---g-~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 539 (729)
...+.++..+++.++... | ..++.++ +..++-+....|+.+-|...++.+... +|.+..+-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 345677777777777642 3 3444443 334445566777778888888777665 344444433333344556778
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
++|.++++.+++.. +.|.+++..=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 88888888887775 336666666666666777777777777777765 4667778888888888888888888888887
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 004814 620 QVKGIRPNVITYNALINGLCRLR---RIDQAYGLFIDMEEE 657 (729)
Q Consensus 620 ~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~ 657 (729)
+-.. +-++..+..+.+.+.-.| +++-|.++|.+.++.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 7642 224555566666655554 455677777777764
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.23 E-value=0.00044 Score=63.55 Aligned_cols=192 Identities=14% Similarity=0.111 Sum_probs=147.0
Q ss_pred HhcCCHHHHHHHHHHHHHC---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 004814 499 LKLGDTSEAYRLQEEMLAK---G-FPPDLI-TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGD 573 (729)
Q Consensus 499 ~~~g~~~~A~~l~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 573 (729)
....+.++.++++.++... | ..++.. .|..++-+....|+.+.|...++++...-+. +..+-..-.--+-..|.
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 4566789999998887653 3 344443 4566667777889999999999998876422 22222222223566899
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFID 653 (729)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 653 (729)
+++|.++++.+++.+ |.|.+++-.-+...-..|+..+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 999999999999886 677888888888888899999999999998887 677999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC
Q 004814 654 MEEEGILPNKYTYTILINENCNAG---NWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 654 m~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p 696 (729)
++-.. |-++..+..+...+.-.| +.+-|.++|.+.+ .+.|
T Consensus 180 ~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al--kl~~ 222 (289)
T KOG3060|consen 180 LLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERAL--KLNP 222 (289)
T ss_pred HHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HhCh
Confidence 98742 445556677777665544 5778899999998 5555
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=9.1e-05 Score=65.35 Aligned_cols=125 Identities=15% Similarity=0.186 Sum_probs=83.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Q 004814 561 YTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT---LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN--VITYNALI 635 (729)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~ 635 (729)
|..++..+ ..++...+.+.++.+.+.. +.+ ....-.+...+...|++++|...|+.+.+....|+ ......+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444443 4677788888788877763 222 23344455677788888888888888887652222 22344567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
..+...|++++|+..++..... ......+...+++|.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888888664332 234456677788888888888888888775
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=8.5e-05 Score=75.75 Aligned_cols=122 Identities=17% Similarity=0.153 Sum_probs=64.6
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh
Q 004814 129 TILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV 208 (729)
Q Consensus 129 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 208 (729)
.+++.+...+++++|..+++++.+.+|+ +...++++|...++-.+|++++.+.++..+. |.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~ 234 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DS 234 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CH
Confidence 3444444555666666666665555443 2333555555555556666666665554332 34
Q ss_pred HhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 209 KNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 209 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
.........|.+.++++.|+++.+++.+.. |-+..+|..|..+|.+.|+++.|+..+..+.
T Consensus 235 ~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 235 ELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 444444455555555566666655555542 2333355555566666666666555555544
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.04 E-value=0.00022 Score=62.93 Aligned_cols=116 Identities=11% Similarity=0.108 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS--IVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~ 261 (729)
.++.+.+...++.+.+..+... ......+...+...|++++|...|+++......++ ......|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444555555555554432210 11222334445555555555555555555431111 1123334555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRD 303 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (729)
|+..++..... ......+......+.+.|+.++|+..|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555443322 12233444455555555666655555554
No 142
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0021 Score=63.41 Aligned_cols=152 Identities=16% Similarity=0.105 Sum_probs=85.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------H
Q 004814 497 GELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVH--GLCKLGSLEEANELLRKMVGDGFIPDHIT-------------Y 561 (729)
Q Consensus 497 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~ 561 (729)
++.-.|++++|...--..++.+ +.+. +..+++ ++.-.++.+.|...|++.+..+ |+... +
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 4445555555555554444432 1111 122222 2223455566666666555542 23221 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHH
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRK---GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI---TYNALI 635 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~~l~ 635 (729)
..-.+-..+.|++..|.+.+.+.+.. +..++...|.....+..+.|+.++|+.-.++..+. |.. .|..-.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 11122346778888888888887765 23344555666666677788888888888877763 322 223333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.++...+++++|.+-+++..+.
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4555667788888888887764
No 143
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00035 Score=71.37 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG 607 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 607 (729)
.++..+...++++.|.++++++.+.. |+. ...++..+...++-.+|.+++++.++.. +.+...+..-...+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555666666666655542 332 2234445555555555555555555442 334444444445555555
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 608 RLELAFMYFSEMQVKGIRP-NVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
+++.|+.+.+++.+. .| +..+|..|+.+|.+.|++++|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 555555555555553 23 23355555555555555555555555444
No 144
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.95 E-value=0.028 Score=56.46 Aligned_cols=277 Identities=13% Similarity=0.141 Sum_probs=144.2
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCC-C----ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--HHh
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLL-P----DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS--FCK 255 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~--~~~ 255 (729)
+-+++++.+|.++|.++.+.--. | .....+.++++|... +.+..........+. .| ...|-.+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 35889999999999998764211 1 123345677777654 355555555555443 12 2234343333 447
Q ss_pred cCCHHHHHHHHHHHHhC--CCCC------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCccChhhHH
Q 004814 256 EGEMQEALELLWEMQGR--GCSP------------NGVTYNVLITGFSRNGELEQARGLIRDMLKL----GLKVSAHSYN 317 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~ 317 (729)
.+.+.+|.+.+....+. +..| |-..=+..+..+...|++.+++.+++++... ....+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 89999999999887665 2222 1222245667788899999999999888754 3447888888
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004814 318 PIICGYSEKGLLVEALNLEEEMVTR---GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC 394 (729)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (729)
.++-.+.+ ..|-++++. .+-|+ |--++-.|.+.=+.-++.. + ....|.......++....
T Consensus 172 ~~vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~-Y-----~k~~peeeL~s~imqhlf 234 (549)
T PF07079_consen 172 RAVLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRP-Y-----EKFIPEEELFSTIMQHLF 234 (549)
T ss_pred HHHHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhch-H-----HhhCcHHHHHHHHHHHHH
Confidence 87766654 334444332 12222 3334444443221111100 0 011133333333333222
Q ss_pred Hc--CCHHHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcC
Q 004814 395 RS--GNIGEAFLLFDELRSRNLVPTVVT-YNTLIDGLCRYGDLEVAQQLKENMINQGIL----PDVITYTIMVNGSCKMG 467 (729)
Q Consensus 395 ~~--g~~~~A~~l~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g 467 (729)
-. .+..--+++++.....-+.|+-.. ...+...... +.+++..+.+.+....+. .=..++..++....+.+
T Consensus 235 i~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 235 IVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred hCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111222333333333334444322 2223333332 445555555444332111 12346667777777888
Q ss_pred CHHHHHHHHHHHHHC
Q 004814 468 NLSMAREFFNEMLRK 482 (729)
Q Consensus 468 ~~~~A~~~~~~~~~~ 482 (729)
+..+|...+.-+.-.
T Consensus 313 ~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL 327 (549)
T ss_pred hHHHHHHHHHHHHhc
Confidence 888888877766654
No 145
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.92 E-value=0.00012 Score=69.21 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=51.5
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN-KYTYTILINENCNAGNWQE 681 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 681 (729)
..+.+++.+|+..|.++++.. +-|++.|..-..+|++.|.++.|++-.+..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 344555555555555555542 124444555555555555555555555555552 232 2355555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH
Q 004814 682 ALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 682 A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
|++.|++++ .+.|+..+|..-
T Consensus 168 A~~aykKaL--eldP~Ne~~K~n 188 (304)
T KOG0553|consen 168 AIEAYKKAL--ELDPDNESYKSN 188 (304)
T ss_pred HHHHHHhhh--ccCCCcHHHHHH
Confidence 555555555 555555554443
No 146
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=0.053 Score=57.29 Aligned_cols=381 Identities=18% Similarity=0.153 Sum_probs=166.2
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF-GIKP--------SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS 275 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 275 (729)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+| -|++++|.++|-+|..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh---
Confidence 367777877777666666666666666554431 2110 000011111222 25666666666665544
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 276 PNGVTYNVLITGFSRNGELEQARGLIRDMLKL-GLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNIL 354 (729)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 354 (729)
| ..|..+.+.|++-...++++.--.. +-..-..+|+.+...+.....+++|.+.+..-.. . ...
T Consensus 764 -D-----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~ 828 (1189)
T KOG2041|consen 764 -D-----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQ 828 (1189)
T ss_pred -h-----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhH
Confidence 1 2344555556665555544321000 0011134556666666665566666655543221 1 113
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCH
Q 004814 355 IYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDL 434 (729)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 434 (729)
+.++.+...+++-..+-..+ +.|....-.+..++.+.|.-++|.+.|-+- +. | ...+..|...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHH
Confidence 44444444444333322222 133444555666666666666666554321 11 1 1234455555566
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 435 EVAQQLKENMINQGILPDVITYTI-MVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEE 513 (729)
Q Consensus 435 ~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 513 (729)
.+|.++-+... -|.+.+.-+ -..-+...++..+|+ ..+.+.|..-.|.+++.+
T Consensus 895 ~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaI----------------------e~~Rka~~~~daarll~q 948 (1189)
T KOG2041|consen 895 GEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAI----------------------EKDRKAGRHLDAARLLSQ 948 (1189)
T ss_pred HHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHH----------------------HHhhhcccchhHHHHHHH
Confidence 66655543321 112211110 111111222222222 223344444455555555
Q ss_pred HHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 514 MLAK----GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 514 ~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (729)
|.+. +.|+-..--..++.++. ..+..++.+-.++....|...+... +...|-..++-++.+..-.-
T Consensus 949 mae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wrg-- 1018 (1189)
T KOG2041|consen 949 MAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWRG-- 1018 (1189)
T ss_pred HhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhhh--
Confidence 5432 22222111111111111 1223344444444444443322211 12223333333333332221
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 590 SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-GIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 590 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.....+..|.+--...|.++.|++.--.+.+. .+-|...+|..+.-+-|....+...-+.|-++..
T Consensus 1019 -AEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1019 -AEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred -HHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 22334444445555677777777654443322 3556667777776666666666555555555444
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.87 E-value=0.00028 Score=56.73 Aligned_cols=93 Identities=20% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCN 675 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 675 (729)
+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.+++..... +.+..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 4455566666777777777777776642 2233556666667777777777777777776653 3344566667777777
Q ss_pred cCCHHHHHHHHHHHH
Q 004814 676 AGNWQEALRLYKEML 690 (729)
Q Consensus 676 ~g~~~~A~~~~~~m~ 690 (729)
.|++++|...+++.+
T Consensus 81 ~~~~~~a~~~~~~~~ 95 (100)
T cd00189 81 LGKYEEALEAYEKAL 95 (100)
T ss_pred HHhHHHHHHHHHHHH
Confidence 777777777777766
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.87 E-value=2.3e-05 Score=49.53 Aligned_cols=33 Identities=55% Similarity=0.970 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPN 277 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 277 (729)
+||+++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.85 E-value=0.015 Score=61.17 Aligned_cols=366 Identities=15% Similarity=0.101 Sum_probs=180.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC-CCcc--------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 275 SPNGVTYNVLITGFSRNGELEQARGLIRDMLKL-GLKV--------SAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 275 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
.|....|..|.......-.++-|+..|-+...- |++. +...-. ...-+--|++++|.+++-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchhh--
Confidence 466677777666655555666666665544321 2110 000011 111223478888888887776652
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 004814 346 PTLATYNILIYGLCKWGRVSDARHRFFEMLRK-NVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTL 424 (729)
Q Consensus 346 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~l 424 (729)
..|..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 2355666667666555544321110 00011356777777777777788888777653221 134
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT 504 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 504 (729)
+.++.+..++++-+.+-+.+ +.+....-.+.+++.+.|.-++|.+.+-+--. | .+.+..+...+++
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHH
Confidence 56666666666655544443 44566667777888888888888776643221 1 2344556666667
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCCHHHHH-HHHH
Q 004814 505 SEAYRLQEEMLAKGFPPDLITY--------------NVLVHGLCKLGSLEEANELLRKMVGDGF---IPDHITYT-SIIH 566 (729)
Q Consensus 505 ~~A~~l~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~-~l~~ 566 (729)
.+|.++-+...- |.+.+. ..-|..+.+.|+.-+|.+++.+|.+... .|-...-. .++.
T Consensus 895 ~~avelaq~~~l----~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~ 970 (1189)
T KOG2041|consen 895 GEAVELAQRFQL----PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLG 970 (1189)
T ss_pred HHHHHHHHhccc----hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHH
Confidence 777666554321 111111 1123334455555555555555543211 11111100 0111
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQ 646 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~ 646 (729)
++ -..+..++.+-.+.....|...+... +...|-..++-++.+..-. | .....|-.|..-....|.++.
T Consensus 971 Al-LvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr-g--AEAyHFmilAQrql~eg~v~~ 1039 (1189)
T KOG2041|consen 971 AL-LVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR-G--AEAYHFMILAQRQLFEGRVKD 1039 (1189)
T ss_pred HH-HHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh-h--HHHHHHHHHHHHHHHhchHHH
Confidence 11 11223333333333333342222211 1122223333333332221 1 234455566666777899999
Q ss_pred HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 647 AYGLFIDMEE-EGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 647 A~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
|++.--.+.. .++-|...+|..+.-+-|....+--.-+.|-++
T Consensus 1040 Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1040 ALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 8876544443 235666778887776666554444333333333
No 150
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.83 E-value=0.0012 Score=70.90 Aligned_cols=74 Identities=16% Similarity=0.073 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
++..|..+.......|++++|...++++.+. .|+...|..++..+...|+.++|.+.|+++. .+.|...+|..+
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~--~L~P~~pt~~~~ 492 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF--NLRPGENTLYWI 492 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCCchHHHH
Confidence 4556666666666667777777777777774 3566677777777777777777777777777 566665554443
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.83 E-value=0.00087 Score=57.94 Aligned_cols=96 Identities=8% Similarity=-0.109 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004814 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673 (729)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 673 (729)
...-.+..-+...|++++|.++|+-+..... -+..-|..|..++...|++++|+..|..+...+ +.|+..+..+..++
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~ 113 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 3444555566778888888888887776432 255567777778888888888888888887765 45667777888888
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004814 674 CNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 674 ~~~g~~~~A~~~~~~m~~ 691 (729)
...|+.++|++.|+..+.
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888888774
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.81 E-value=0.00043 Score=71.04 Aligned_cols=90 Identities=11% Similarity=0.025 Sum_probs=51.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 645 (729)
..+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..++++++.. +.+...|..++.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34455566666666666666553 3445555555666666666666666666665542 124445555566666666666
Q ss_pred HHHHHHHHHHHc
Q 004814 646 QAYGLFIDMEEE 657 (729)
Q Consensus 646 ~A~~~~~~m~~~ 657 (729)
+|+..|+++++.
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
No 153
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.77 E-value=4.6e-05 Score=48.11 Aligned_cols=30 Identities=43% Similarity=0.703 Sum_probs=11.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
|+.+|.+|++.|++++|.++|++|.+.|+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~ 32 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIE 32 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 333333333333333333333333333333
No 154
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.017 Score=57.26 Aligned_cols=273 Identities=13% Similarity=0.002 Sum_probs=134.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
...+.+..++.+|+..+..+++..+. ++..|..-+..+...|++++|.--.+.-++.. +-....+....+++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHH
Confidence 34567888899999999999998765 56667777778888888888877666655432 11222333444444444444
Q ss_pred HHHHHHHHH---------------HHhCC-CCCCHHHHHHHH-HHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHH-
Q 004814 260 QEALELLWE---------------MQGRG-CSPNGVTYNVLI-TGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIIC- 321 (729)
Q Consensus 260 ~~A~~~~~~---------------m~~~~-~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~- 321 (729)
.+|.+.++. ..... -+|...+|..+- ..+.-.|++++|.+.--..++.+ ....+..+++
T Consensus 134 i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg 210 (486)
T KOG0550|consen 134 IEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRG 210 (486)
T ss_pred HHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcc
Confidence 444444431 11110 012223333222 22333455555555555544432 1111222222
Q ss_pred -HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 004814 322 -GYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIG 400 (729)
Q Consensus 322 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 400 (729)
++...++.+.|...|++.+..+ |+-..-. ..-.-.+.++.+. .-.+-..+.|++.
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk----------~~~~~~k~le~~k------------~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRLD--PDHQKSK----------SASMMPKKLEVKK------------ERGNDAFKNGNYR 266 (486)
T ss_pred cccccccchHHHHHHHhhhhccC--hhhhhHH----------hHhhhHHHHHHHH------------hhhhhHhhccchh
Confidence 2223444555555555544432 1111100 0000011111111 1123345667777
Q ss_pred HHHHHHHHHhhC---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 401 EAFLLFDELRSR---NLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFN 477 (729)
Q Consensus 401 ~A~~l~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (729)
+|.+.|.+.+.. +..++...|........+.|+.++|+.-.+...+.+ +.-...+..-..++...+++++|.+-++
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~ 345 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYE 345 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777666543 233444455555555666677777777666666542 1112222223334445566666666666
Q ss_pred HHHHC
Q 004814 478 EMLRK 482 (729)
Q Consensus 478 ~~~~~ 482 (729)
...+.
T Consensus 346 ~a~q~ 350 (486)
T KOG0550|consen 346 KAMQL 350 (486)
T ss_pred HHHhh
Confidence 66554
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.74 E-value=5.7e-05 Score=59.36 Aligned_cols=81 Identities=17% Similarity=0.214 Sum_probs=45.1
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 606 RGRLELAFMYFSEMQVKGIR-PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALR 684 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 684 (729)
.|+++.|+.+++++.+.... ++...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 45666777777776664321 1333444466677777777777777766 2221 1122344445666677777777777
Q ss_pred HHHH
Q 004814 685 LYKE 688 (729)
Q Consensus 685 ~~~~ 688 (729)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6665
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00045 Score=55.47 Aligned_cols=94 Identities=20% Similarity=0.131 Sum_probs=61.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
+..++..+...|++++|...++++.+..+. +...+..+...+...|++++|.+.|+...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344566666777777777777777765433 33555666666777777777777777766654 3344566666666777
Q ss_pred cCCHHHHHHHHHHHHh
Q 004814 256 EGEMQEALELLWEMQG 271 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~ 271 (729)
.|++++|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777776666554
No 157
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.73 E-value=0.065 Score=53.83 Aligned_cols=135 Identities=20% Similarity=0.268 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q 004814 558 HITYTSIIHASLEMGDLRRGRDLFNNMLRKG-LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVIT-YNALI 635 (729)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-~~~l~ 635 (729)
..+|...++.-.+..-++.|..+|-++.+.+ ..+++.++++++.-++ .|+...|.++|+--... -||... -+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456667777777777888888888888876 5577778888777554 57778888888776654 234333 35566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPN--KYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
..+.+.++-..|..+|+..+++ +..+ ..+|..+|.--..-|+...+..+=++|. ..-|..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~--e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR--ELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH--HHcCcH
Confidence 6677788888888888876654 2333 4578888887777888888888777776 444544
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.73 E-value=0.001 Score=56.39 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC--CCChhhHHHHHHH
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLP--DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI--KPSIVTYNTMLDS 252 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~ 252 (729)
..++..+.+.|++++|.+.|+++.+..+.. ....+..+..++.+.|++++|...|+.+..... +....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 344444555555555555555555433210 122344455555555555555555555554320 0113345555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 004814 253 FCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~ 272 (729)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55566666666666655554
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.71 E-value=0.00087 Score=56.77 Aligned_cols=97 Identities=11% Similarity=-0.042 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIR--PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL--PNKYTYTILI 670 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~ 670 (729)
++..++..+.+.|++++|.+.|+++.+.... .....+..++.++.+.|++++|...++++...... .....+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455566666677777777777777654211 01234555666777777777777777777653211 1134566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.++.+.|++++|.+.++++++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 677777777777777777763
No 160
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.71 E-value=6.2e-05 Score=47.17 Aligned_cols=32 Identities=41% Similarity=0.691 Sum_probs=16.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSP 276 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 276 (729)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555544443
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.70 E-value=0.0058 Score=60.76 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----CCC-hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL----LPD-VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTY 246 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 246 (729)
....|...+..|-..|++++|.+.|.+..+... ..+ ...|.....++.+. ++++|+..+++.
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A------------ 100 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA------------ 100 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH------------
Confidence 355666777778888888888888877754210 000 01122222222222 444444444333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhC----CCc-cChhhHHHHH
Q 004814 247 NTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRN-GELEQARGLIRDMLKL----GLK-VSAHSYNPII 320 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li 320 (729)
+..|...|++..|-+.+.++ ...|... |++++|.+.|++..+. |.+ .-...+..++
T Consensus 101 ---~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 101 ---IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp ---HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 33455555555554444433 3344444 6667776666666532 100 0122344555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 321 CGYSEKGLLVEALNLEEEMVTRGVAP-----TLA-TYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
..+.+.|++++|.++|++....-... ++. .+...+-++...|+...|.+.+++....
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56666666666666666665532211 111 1222233444456666666666665543
No 162
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.66 E-value=8.5e-05 Score=58.37 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLL-PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE 264 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 264 (729)
+|++++|+..|+++.+..+. ++...+..+..++.+.|++++|..+++. .+.+ +.+....-.+..++.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46677777777777776542 2333444567777777777777777766 3222 1233344445666667777777777
Q ss_pred HHHH
Q 004814 265 LLWE 268 (729)
Q Consensus 265 ~~~~ 268 (729)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
No 163
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.63 E-value=0.0001 Score=46.12 Aligned_cols=31 Identities=35% Similarity=0.630 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIR 625 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 625 (729)
+|+.++.+|++.|+++.|.++|++|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444433
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.62 E-value=0.0014 Score=67.42 Aligned_cols=91 Identities=10% Similarity=-0.122 Sum_probs=77.6
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
+..+...|++++|++.|+++++..+. +...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 45567889999999999999988765 67778888889999999999999999998875 55777888889999999999
Q ss_pred HHHHHHHHHHHhC
Q 004814 260 QEALELLWEMQGR 272 (729)
Q Consensus 260 ~~A~~~~~~m~~~ 272 (729)
++|...|++..+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0026 Score=57.99 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT--LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALING 637 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 637 (729)
.+..+...+...|++++|...|++..+....+. ...+..++..+.+.|++++|...++++.+.. +-+...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344444555555555555555555554321111 2344555555555555555555555555431 1123344444445
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 638 LCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+...|+...+..-++.... .+++|.+++++++ ...|+.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~--~~~p~~ 153 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAI--RLAPNN 153 (172)
T ss_pred HHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHH--hhCchh
Confidence 5555544333322222211 1566777777776 556654
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.60 E-value=0.011 Score=56.90 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+-..+..+...|++++|...|++++...|.. .........++.+|.+.+++++|...|++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s------------~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 44444455666677888888888888888776652 112334456777888888888888888888876
Q ss_pred CCC
Q 004814 203 GLL 205 (729)
Q Consensus 203 ~~~ 205 (729)
.+.
T Consensus 99 ~P~ 101 (243)
T PRK10866 99 NPT 101 (243)
T ss_pred CcC
Confidence 544
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.60 E-value=0.0016 Score=63.95 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRK----G-LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-----GIRPNVI 629 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~~~ 629 (729)
.+..+.+++.-.|+++.|.+.|+..... | -.....+..+|...|.-..++++|+.++.+-+.- ...-...
T Consensus 237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~R 316 (639)
T KOG1130|consen 237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELR 316 (639)
T ss_pred hhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 3444555555555555555555443221 1 0112334444555555555555555555443210 0111333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
.+.+|..+|...|..++|+.+.+.-.
T Consensus 317 acwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 317 ACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45555555555555555555544433
No 168
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.60 E-value=0.0016 Score=56.35 Aligned_cols=96 Identities=7% Similarity=-0.060 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
....+...+...|++++|..+|+-+....+. +..-|..|..++...|++.+|+..|....... +.|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344555566778888888888877776654 55666777777777788888888888777766 456777777777777
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 004814 255 KEGEMQEALELLWEMQGR 272 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~ 272 (729)
+.|+.+.|.+.|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888887777776654
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0025 Score=58.08 Aligned_cols=94 Identities=16% Similarity=0.047 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
....+..++..|...|++++|...|+++++.++.+. ...+..+..++.+.|++++|...+++..+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 355677788888999999999999999987654432 3567788888999999999999999988764 4456677777
Q ss_pred HHHHHhcCCHHHHHHHH
Q 004814 250 LDSFCKEGEMQEALELL 266 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~ 266 (729)
...+...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 88888877765554433
No 170
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.59 E-value=0.0012 Score=67.89 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=83.0
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 484 LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK--GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITY 561 (729)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 561 (729)
...+......++.......+.+++..++...... ....-..+..++++.|.+.|..++++.+++.=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445566666666666667777777777766654 11122334457777777777777777777777777777788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR 606 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 606 (729)
+.+|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888887777777776665555666665555555544
No 171
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.58 E-value=0.001 Score=65.85 Aligned_cols=129 Identities=12% Similarity=0.110 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE-MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAH 603 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 603 (729)
+|..++...-+.+..+.|..+|.++.+.+. .+..+|......-.. .++.+.|.++|+..++. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 344555555555555555555555553321 122233333332122 34444455555555544 234445555555555
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 604 AARGRLELAFMYFSEMQVKGIRPNV---ITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
...|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555543 22211 2455555555555555555555555554
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0027 Score=57.68 Aligned_cols=102 Identities=13% Similarity=0.047 Sum_probs=60.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
...|..++..+...|++++|+..|++.......+ ...++..+...+...|+.++|+..+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445556666666777777777777776542222 12356667777777777777777777776642 22334455555
Q ss_pred HHHH-------hcCCHHHH-------HHHHHHHHHCCCCCC
Q 004814 671 NENC-------NAGNWQEA-------LRLYKEMLDREIEPD 697 (729)
Q Consensus 671 ~~~~-------~~g~~~~A-------~~~~~~m~~~~~~pd 697 (729)
..+. +.|++++| ..++++.+ +..|+
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~--~~~p~ 152 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAI--ALAPG 152 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHH--HhCcc
Confidence 5555 66776644 44444454 56664
No 173
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.55 E-value=0.019 Score=57.01 Aligned_cols=175 Identities=16% Similarity=0.142 Sum_probs=85.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
|......+-..|++++|...|.++...... ..+.......|...+.+|.+. ++++|+..++++.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~---------~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~------ 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEK---------LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI------ 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH------
Confidence 334444566667777777766665443211 000011233444455555444 6666666665554
Q ss_pred ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HH
Q 004814 207 DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKE-GEMQEALELLWEMQGR----GCSPN--GV 279 (729)
Q Consensus 207 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~ 279 (729)
..|.+.|++..|-+.+..+- ..|-.. |++++|++.|++..+. | .+. ..
T Consensus 102 ---------~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~ 156 (282)
T PF14938_consen 102 ---------EIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAE 156 (282)
T ss_dssp ---------HHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred ---------HHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHH
Confidence 34555666555544444432 233344 5666666666554332 1 111 12
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc-----Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLGLKV-----SAH-SYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.+..+...+.+.|++++|.++|++........ +.. .+...+-.+...|+...|.+.+++....
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34455566667777777777777666532211 111 2223333455567777777777776654
No 174
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.54 E-value=0.0003 Score=52.62 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=46.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 639 CRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLL 706 (729)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~ 706 (729)
.+.|++++|+++|+++.+.. +-+...+..++.+|.+.|++++|.++++++. ...|+...+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~--~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL--KQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH--GGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCHHHHHHHHh
Confidence 45678888888888887763 4466677778888888888888888888887 56677666665533
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.54 E-value=0.0014 Score=67.31 Aligned_cols=122 Identities=14% Similarity=0.208 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 275 SPNGVTYNVLITGFSRNGELEQARGLIRDMLKL--GLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYN 352 (729)
Q Consensus 275 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 352 (729)
+.+......+++.+....+++++..++-+.... ....-..|..++++.|...|..+++++++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 335555566666666666677777777666643 222234455677888888888888888888777788888888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 004814 353 ILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS 396 (729)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (729)
.|++.+.+.|++..|.++..+|+..+...+..|+..-+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888777776656666665555555444
No 176
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.52 E-value=0.00099 Score=63.18 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=59.5
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
..+.++|++|+..|.++++..+. |.+-|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHH
Confidence 34566666666666666665544 55555556666666666666666666666553 33345666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHH
Q 004814 263 LELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~ 283 (729)
.+.|++..+. .|+-.+|-.
T Consensus 169 ~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 169 IEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHhhhcc--CCCcHHHHH
Confidence 6666666653 555555543
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.006 Score=65.54 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHHH
Q 004814 519 FPPDLITYNVLVHGLCKL-----GSLEEANELLRKMVGDGFIPD-HITYTSIIHASLEM--------GDLRRGRDLFNNM 584 (729)
Q Consensus 519 ~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 584 (729)
.+.+...|..++.+.... +..+.|..+|+++++.. |+ ...+..+..++... +++..+.+..++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 355566666665554322 12556667777766653 33 23333333322211 1233444444443
Q ss_pred HHC-CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004814 585 LRK-GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK 663 (729)
Q Consensus 585 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (729)
... ..+.+...|..+.-.....|++++|...++++.+. .|+...|..++..+...|+.++|.+.++++... .|..
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~ 486 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGE 486 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCC
Confidence 332 12445677777777777789999999999999886 467888899999999999999999999998874 5655
Q ss_pred HHHH
Q 004814 664 YTYT 667 (729)
Q Consensus 664 ~~~~ 667 (729)
.+|.
T Consensus 487 pt~~ 490 (517)
T PRK10153 487 NTLY 490 (517)
T ss_pred chHH
Confidence 5553
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.51 E-value=0.014 Score=51.15 Aligned_cols=153 Identities=13% Similarity=0.061 Sum_probs=97.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLEL 611 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 611 (729)
+..+.=+++...+-..+-.. .-|+...--.+..+..+.|+..+|...|++...--...|......+.++....+++.+
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~ 142 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAA 142 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHH
Confidence 33333344444433333333 2456666666777778888888888888877765445667777777777777888888
Q ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 612 AFMYFSEMQVKG---IRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 612 A~~~~~~~~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
|...++.+.+.. -.|| +.-.+...|...|+..+|..-|+..... -|+...-......+.++|+.++|..-+..
T Consensus 143 a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 143 AQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 888888777652 2233 3345666777788888888888877774 44444333334446677777777665555
Q ss_pred HH
Q 004814 689 ML 690 (729)
Q Consensus 689 m~ 690 (729)
..
T Consensus 219 v~ 220 (251)
T COG4700 219 VV 220 (251)
T ss_pred HH
Confidence 54
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0044 Score=59.29 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=85.1
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 004814 582 NNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR---RIDQAYGLFIDMEEEG 658 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g 658 (729)
+.-+..+ +.|...|..|..+|...|+.+.|..-|.+..+. -.+|+..+..+..++..+. ...++..+|++++..+
T Consensus 146 e~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D 223 (287)
T COG4235 146 ETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD 223 (287)
T ss_pred HHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC
Confidence 3334443 677888888888888888888888888888876 2346666667766655443 3567888888888864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 659 ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 659 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+-|..+...|...+...|++.+|...|+.|+ ..-|....+..+
T Consensus 224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL--~~lp~~~~rr~~ 266 (287)
T COG4235 224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLL--DLLPADDPRRSL 266 (287)
T ss_pred -CccHHHHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCCCchHHH
Confidence 5566677777888888888888888888888 445544445555
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.50 E-value=0.002 Score=58.48 Aligned_cols=86 Identities=13% Similarity=0.050 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
......|..++..+...|++++|...+++++...++. .....++..+..+|.+.|++++|+..+++++
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~------------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP------------YDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc------------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3445667777777888888888888888877654321 0123466677777888888888888888877
Q ss_pred HCCCCCChHhHHHHHHHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLR 219 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~ 219 (729)
+..+. ...+++.+..++.
T Consensus 100 ~~~~~-~~~~~~~la~i~~ 117 (168)
T CHL00033 100 ERNPF-LPQALNNMAVICH 117 (168)
T ss_pred HhCcC-cHHHHHHHHHHHH
Confidence 65432 3344555555555
No 181
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.49 E-value=0.0051 Score=51.36 Aligned_cols=106 Identities=19% Similarity=0.115 Sum_probs=69.6
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC----hhhHHHHH
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS----IVTYNTML 250 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~li 250 (729)
..+..++-..|+.++|+.+|++.+..|+... ...+..+...|...|++++|..++++..... |+ ......+.
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHH
Confidence 3456677788888999999999988886644 2345567777888888888888888877642 32 22223334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 251 DSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
-++...|+.++|++.+-..... +...|.--|..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 4566778888888777655442 333454444444
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.47 E-value=0.00016 Score=44.15 Aligned_cols=29 Identities=48% Similarity=0.960 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRG 273 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 273 (729)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555554443
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=0.0011 Score=65.14 Aligned_cols=285 Identities=16% Similarity=0.099 Sum_probs=149.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHH--h--CCC-ccChhhHHHHHH
Q 004814 251 DSFCKEGEMQEALELLWEMQGRGCSPNGV----TYNVLITGFSRNGELEQARGLIRDML--K--LGL-KVSAHSYNPIIC 321 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~--~--~~~-~~~~~~~~~li~ 321 (729)
.-+|+.|+.+....+|+...+.|-. |.. .|.-|.++|.-.+++++|.+....=+ . .|- .-...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4588889999999999888887633 433 35556667777778888877654321 1 110 112233344555
Q ss_pred HHHhCCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 004814 322 GYSEKGLLVEALNLEEEMV----TRGVA-PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS 396 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~----~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (729)
.+--.|.+++|+-...+-. +.|-. .....+-.+...|...|+.-.... -.+.|-.++.++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev~----------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEVT----------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHHH-----------
Confidence 5555666666654433221 11100 011222223444443332100000 000011011100
Q ss_pred CCHHHHHHHHHHH----hhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhc
Q 004814 397 GNIGEAFLLFDEL----RSRNLV-PTVVTYNTLIDGLCRYGDLEVAQQLKENMIN----QGI-LPDVITYTIMVNGSCKM 466 (729)
Q Consensus 397 g~~~~A~~l~~~m----~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~ 466 (729)
..++.|.+.|.+= .+.|-. .--..|..|.+.|.-.|+++.|+...+.-+. -|- ......+..+.+++.-.
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl 248 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL 248 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence 0123333333321 111100 1124566666677777888888876654332 121 12345677778888888
Q ss_pred CCHHHHHHHHHHHHHC----CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHhc
Q 004814 467 GNLSMAREFFNEMLRK----GL-QPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK-----GFPPDLITYNVLVHGLCKL 536 (729)
Q Consensus 467 g~~~~A~~~~~~~~~~----g~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~~~~~~~~~~~li~~~~~~ 536 (729)
|+++.|.+.|+..... |- .........+...|.-..++++|+..+..-+.. +..-...++.+|..++...
T Consensus 249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al 328 (639)
T KOG1130|consen 249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL 328 (639)
T ss_pred cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8888888887765432 21 112344455666666667778888777654321 1123456778888888888
Q ss_pred CCHHHHHHHHHHHHh
Q 004814 537 GSLEEANELLRKMVG 551 (729)
Q Consensus 537 g~~~~A~~~~~~~~~ 551 (729)
|..++|+.+.+..++
T Consensus 329 g~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 329 GEHRKALYFAELHLR 343 (639)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877765543
No 184
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.46 E-value=0.00037 Score=51.54 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=38.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 634 LINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 634 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
++..+.+.|++++|.+.|+++++.. +-+...+..+..++...|++++|...|++++ ...|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~--~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL--ELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH--HHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcC
Confidence 3455666777777777777777653 3345566667777777777777777777776 44444
No 185
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.46 E-value=0.00058 Score=51.22 Aligned_cols=65 Identities=18% Similarity=0.178 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS-MVEQCLLVFNKMLR 201 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 201 (729)
++.+|..++.++...|++++|+..|+++++.+|+ +..++..++.+|.+.| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---------------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---------------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---------------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567777888888888888888888888877766 4667777777788877 67888888777776
Q ss_pred C
Q 004814 202 N 202 (729)
Q Consensus 202 ~ 202 (729)
.
T Consensus 67 l 67 (69)
T PF13414_consen 67 L 67 (69)
T ss_dssp H
T ss_pred c
Confidence 4
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.44 E-value=0.0022 Score=51.32 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=50.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCC-CCChHhHHHHHHHHHHCC--------ChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGL-LPDVKNCNRIIKVLRDNG--------FSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~l~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
.+..+...+++.....+|+.+++.|+ .|++..|+.++.+..++. +.-+.+.+|+.|+..+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455888888888888888888 788888888887766543 223445566666666666666666666
Q ss_pred HHHHHh
Q 004814 250 LDSFCK 255 (729)
Q Consensus 250 i~~~~~ 255 (729)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
No 187
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.074 Score=51.25 Aligned_cols=58 Identities=7% Similarity=-0.050 Sum_probs=28.1
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTY---NTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 214 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
....+...|++++|.+.|+.+...- +-+..+. -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3344444555555555555555432 1112221 23445555566666666666655554
No 188
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.42 E-value=0.0023 Score=63.25 Aligned_cols=129 Identities=12% Similarity=0.064 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 210 NCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK-EGEMQEALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 210 ~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
+|..+++...+.+..+.|+.+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555555566665555432 2222333333333222 34444466666655554 344555555555555
Q ss_pred HhCCCHHHHHHHHHHHHhCCCcc---ChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 289 SRNGELEQARGLIRDMLKLGLKV---SAHSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
.+.|+.+.|+.+|++.+.. +.+ ....|...+..-.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5566666666666655543 111 123455555555555555555555555444
No 189
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.41 E-value=0.00049 Score=51.59 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAG-NWQEALRLYKEML 690 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~ 690 (729)
++..|..++..+...|++++|+..|++.++.+ +.+...|..+..++.+.| ++++|++.+++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 45566677777777777777777777777753 334556677777777777 5777777777766
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0056 Score=58.62 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCC---ChhHHHHHHHHHHhCCCCCChhhHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNG---FSVKAREVYRMMGEFGIKPSIVTYNT 248 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ 248 (729)
+.+-|..|..+|.+.|+++.|...|.+..+..+. +...+..+..++..+. ...++..+|+++++.+ +-|+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 3444555555555555555555555555543322 3333333333332211 2234445555554443 334444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 249 MLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
|...+..+|++.+|...++.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444555555555555555443
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.39 E-value=0.057 Score=47.57 Aligned_cols=133 Identities=14% Similarity=0.113 Sum_probs=91.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-ccChhhHHH
Q 004814 240 KPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL-KVSAHSYNP 318 (729)
Q Consensus 240 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~ 318 (729)
.|++..-..|..+....|++.+|...|++....-+..|......+.++....+++.+|...++++.+... ..++.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4666666677788888888888888888877654566777777777888888888888888888776531 113345556
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 319 IICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
+.+.+...|++.+|...|+..... .|+...-......+.++|+.++|..-+.++
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677778888888888888877764 344444344456667777776666544443
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.38 E-value=0.00021 Score=43.58 Aligned_cols=29 Identities=38% Similarity=0.722 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLG 308 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 308 (729)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 193
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.34 E-value=0.22 Score=50.38 Aligned_cols=446 Identities=14% Similarity=0.129 Sum_probs=237.9
Q ss_pred HHHHCCChhHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--H
Q 004814 217 VLRDNGFSVKAREVYRMMGEFGIKPS------IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITG--F 288 (729)
Q Consensus 217 ~l~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~--~ 288 (729)
.+.+++++.+|.++|.++.+.. ..+ ...-+.++++|.. .+.+.-...+.+..+. .| ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 4678899999999999987642 222 2234567777765 4556555566555554 22 2334444433 4
Q ss_pred HhCCCHHHHHHHHHHHHhC--CCcc------------ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCCHHH
Q 004814 289 SRNGELEQARGLIRDMLKL--GLKV------------SAHSYNPIICGYSEKGLLVEALNLEEEMVTR----GVAPTLAT 350 (729)
Q Consensus 289 ~~~g~~~~A~~~~~~m~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~ 350 (729)
.+.|.+++|.+.+..-... +-.+ |-..=+..+..+...|++.++..+++++..+ ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 4778899998888776654 2111 1111233445556677777777766666553 22345666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 004814 351 YNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR 430 (729)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~ 430 (729)
|+.++-.+.+ ..|-++.+.....=...|.-++-.|.+.=+. ++.-.-..+.|.......++....-
T Consensus 170 yd~~vlmlsr--------SYfLEl~e~~s~dl~pdyYemilfY~kki~~------~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSR--------SYFLELKESMSSDLYPDYYEMILFYLKKIHA------FDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhH--------HHHHHHHHhcccccChHHHHHHHHHHHHHHH------HhhchHHhhCcHHHHHHHHHHHHHh
Confidence 6655544432 2333332211100011233444444332111 1110001123444444444443332
Q ss_pred cC--CHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHhhHHHHHHHHHhcCC
Q 004814 431 YG--DLEVAQQLKENMINQGILPDVI-TYTIMVNGSCKMGNLSMAREFFNEMLRKGLQP----DRFAYTTQIAGELKLGD 503 (729)
Q Consensus 431 ~g--~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~----~~~~~~~li~~~~~~g~ 503 (729)
.. +..--.+++....+.-+.|+-. +...+...+.+ +.+++..+.+.+....+.+ -..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 21 2223334444443433444432 33344444443 5555555555544331111 23567778888889999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH---HHH
Q 004814 504 TSEAYRLQEEMLAKGFPPDLITY-------NVLVHGLCKL----GSLEEANELLRKMVGDGFIPDHITYTSIIH---ASL 569 (729)
Q Consensus 504 ~~~A~~l~~~~~~~~~~~~~~~~-------~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~ 569 (729)
...|...+.-+... .|+...- ..+-+..+.- .+...=+.+++......+. .......++. -+-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHH
Confidence 99998888776654 2332211 1222333311 1233334555555544322 2222333333 355
Q ss_pred hcCC-HHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHHc---CCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHH
Q 004814 570 EMGD-LRRGRDLFNNMLRKGLSPTLVTYTVLI----HAHAAR---GRLELAFMYFSEMQVKGIRP----NVITYNALING 637 (729)
Q Consensus 570 ~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~---g~~~~A~~~~~~~~~~g~~p----~~~~~~~l~~~ 637 (729)
+.|. -++|+.+++.+++-. +-|...-|.+. .+|.+. ..+.+-+.+-+-+.+.|+.| +...-|.|.++
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA 469 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA 469 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence 5665 788999999888753 34444333332 233322 22344444444455667776 34455666655
Q ss_pred --HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 638 --LCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 638 --~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+..+|++.++.-+-.-+.+ +.|++.+|..++-++....+++||..++..+
T Consensus 470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5678999998877666666 6889999999999999999999999998775
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.31 E-value=0.003 Score=50.58 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGC-SPNGVTYNVLITGFS 289 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~ 289 (729)
|..+...+++.....+|+.+++.|+ .|++.+|+.++...+
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 3334444555555555555555554 455555555444443
No 195
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.31 E-value=0.21 Score=49.44 Aligned_cols=151 Identities=19% Similarity=0.141 Sum_probs=89.7
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHH--hcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchH
Q 004814 96 VLNRIREKPRIALRFFRWVETQPGVKRDEFVFCTILEILI--ESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSI 173 (729)
Q Consensus 96 vl~~~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~--~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 173 (729)
+++.+-.+|..+-+.|+.-.+..| |..+-..+. ..|+-..|...-.+.-+. +++. -.+
T Consensus 61 lv~~iw~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l---------lssD----qep 120 (531)
T COG3898 61 LVRSIWESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL---------LSSD----QEP 120 (531)
T ss_pred HHHHHHhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh---------hhcc----chH
Confidence 334455678888888887765544 334444443 456666676655543321 1110 012
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHH----HHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIK----VLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
-+...-.+.-.-.|++++|.+-|+.|.. |+.+-..=+. .-.+.|..+.|.+.-+.....- +.-...+...
T Consensus 121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~At 194 (531)
T COG3898 121 LIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARAT 194 (531)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHH
Confidence 2222333444567888888888888886 3333222222 2245777777777777766543 3345677788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 004814 250 LDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+...|..|+++.|+++.+.-+..
T Consensus 195 Le~r~~~gdWd~AlkLvd~~~~~ 217 (531)
T COG3898 195 LEARCAAGDWDGALKLVDAQRAA 217 (531)
T ss_pred HHHHHhcCChHHHHHHHHHHHHH
Confidence 88888888888888888776553
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.27 E-value=0.16 Score=47.36 Aligned_cols=137 Identities=13% Similarity=0.095 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-----HHHHHHH
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVIT-----YNALING 637 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~-----~~~l~~~ 637 (729)
.++..+.-.|.+.-...++++.++...+.++.....|++.-.+.|+.+.|...|+...+..-..|..+ .......
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 34444444455555555555555544344455555555555555555555555554433211112111 2222233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 638 LCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHS 702 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~ 702 (729)
|.-++++.+|...+.++...+ +.|+...+.-.-++.-.|+..+|++.++.|+ ...|...+..
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~--~~~P~~~l~e 323 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMV--QQDPRHYLHE 323 (366)
T ss_pred eecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHh--ccCCccchhh
Confidence 444455555555555555543 3334444444334444556666666666665 4444444333
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.23 E-value=0.034 Score=52.11 Aligned_cols=69 Identities=10% Similarity=0.060 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
....-..+..+...|++.+|...|+++....|.+ .......-.++.+|.+.|++++|...+++.++.-
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s------------~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNS------------PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3344455566677788888888887777765542 2345566677777788888888888888877654
Q ss_pred C
Q 004814 204 L 204 (729)
Q Consensus 204 ~ 204 (729)
+
T Consensus 73 P 73 (203)
T PF13525_consen 73 P 73 (203)
T ss_dssp T
T ss_pred C
Confidence 3
No 198
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.23 E-value=0.0014 Score=48.38 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=24.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 182 IYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
.+.+.|++++|...|+++++..+. +...+..+..++...|++++|..+|+++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444444433 444444444444444444444444444443
No 199
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.21 E-value=0.27 Score=48.69 Aligned_cols=252 Identities=17% Similarity=0.186 Sum_probs=148.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 004814 431 YGDLEVAQQLKENMINQGILPDVITYTIMVN----GSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSE 506 (729)
Q Consensus 431 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 506 (729)
.|+.+.|.+-|+.|.. |+.+-..=++ .-.+.|+.+.|..+-++....-.. -.......+...+..|+++.
T Consensus 133 eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 133 EGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred cCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 4666666666666654 2222211111 123456666666666665554221 24556666666666777777
Q ss_pred HHHHHHHHHHCC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 004814 507 AYRLQEEMLAKG-FPPDLIT--YNVLVHGLC---KLGSLEEANELLRKMVGDGFIPDHITY-TSIIHASLEMGDLRRGRD 579 (729)
Q Consensus 507 A~~l~~~~~~~~-~~~~~~~--~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~ 579 (729)
|+++++.-.... +.++..- -..|+.+-. -..+...|...-.+..+. .||..-- ..-..++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhh
Confidence 776666544331 2222211 112221111 122455666655555553 4554322 233467889999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 580 LFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-GIRP-NVITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
+++.+-+.. |.+.++.. ..+.+.|+. ++.-+++.... .++| +..+...+..+-...|++..|..--+....
T Consensus 285 ilE~aWK~e--PHP~ia~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r- 357 (531)
T COG3898 285 ILETAWKAE--PHPDIALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR- 357 (531)
T ss_pred HHHHHHhcC--CChHHHHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh-
Confidence 999999874 55544432 334455553 33333333221 1344 455667777888888999988887777665
Q ss_pred CCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCH
Q 004814 658 GILPNKYTYTILINENCN-AGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 658 g~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
..|....|..|.+.-.. .|+-.++...+-+.+...-.|+.
T Consensus 358 -~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 358 -EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred -hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 47888888888877655 49999999999999877666654
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.0012 Score=49.27 Aligned_cols=54 Identities=17% Similarity=0.210 Sum_probs=32.5
Q ss_pred HhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 135 IESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
.+.|++++|...+++++..+|+ +..+...++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD---------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT---------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4556666666666666666554 35555566666666666666666666666543
No 201
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.14 E-value=0.023 Score=47.44 Aligned_cols=54 Identities=28% Similarity=0.257 Sum_probs=22.5
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCccC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 288 FSRNGELEQARGLIRDMLKLGLKVS--AHSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
+-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3334444444444444444433221 12333344444444444444444444443
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.23 Score=46.44 Aligned_cols=236 Identities=14% Similarity=0.088 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhh-hHHH---hhcCCCC--cchHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGI-LDVL---IGGGLSS--CVSIKILDLLLLIYTKKSMVEQCLLVFNK 198 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~-~~~l---~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 198 (729)
..|+.-+.++.+-+++++|..-++..-..+.... .+.. .-+...+ +.+.+..... +..+.|...+.+.-+..
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe--~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAE--LQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHH--HHHhcCCcHHHHHHHHH
Confidence 4467778889999999998877666554442211 0100 0000011 1222322222 22344555555544444
Q ss_pred HHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 004814 199 MLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG 278 (729)
Q Consensus 199 ~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 278 (729)
+... ...+++.+......+..+..+++=. ....+.++.++...|.+.-...++.+..+...+.+.
T Consensus 148 L~~~--------V~~ii~~~e~~~~~ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p 212 (366)
T KOG2796|consen 148 LKTV--------VSKILANLEQGLAEESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEP 212 (366)
T ss_pred HHHH--------HHHHHHHHHhccchhhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccH
Confidence 3321 0112222222222344444444332 234566777777777888888888888877556667
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHH-----HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPII-----CGYSEKGLLVEALNLEEEMVTRGVAPTLATYNI 353 (729)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 353 (729)
.....|++.-.+.||.+.|...|++..+..-..+..+.+.++ ..|.-.+++.+|...+.+....... |+..-|.
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~Nn 291 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNN 291 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhch
Confidence 777777788788888888888888776543333333333332 2344455566666666555554322 3333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 354 LIYGLCKWGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~~~~~~ 378 (729)
-.-+..-.|+..+|.+.++.|....
T Consensus 292 KALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 292 KALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3333333466666666666666544
No 203
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.13 E-value=0.011 Score=53.77 Aligned_cols=103 Identities=20% Similarity=0.271 Sum_probs=51.1
Q ss_pred CChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhh
Q 004814 241 PSIVTYNTMLDSFCKE-----GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHS 315 (729)
Q Consensus 241 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 315 (729)
.+-.+|..+++.|.+. |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 4555566666555532 3344444455555555555555555555555432 2111 0111111100
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWG 362 (729)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 362 (729)
-.-.+.+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 011233456666677777777677777766666664443
No 204
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.38 Score=48.28 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=58.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 004814 352 NILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRY 431 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~ 431 (729)
+..+.-+...|+...|.++-.+..- ||..-|...+.+++..+++++-.++-.. . -++.-|..++..|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHC
Confidence 3344555556666666655544432 6666666666666666666655543321 1 1335566666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 432 GDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREF 475 (729)
Q Consensus 432 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (729)
|+..+|..+...+ + +..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 6666666665541 1 13344556666666666554
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.8 Score=49.50 Aligned_cols=345 Identities=14% Similarity=0.103 Sum_probs=186.3
Q ss_pred CCCccChhhHH-----HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCC
Q 004814 307 LGLKVSAHSYN-----PIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGR--VSDARHRFFEMLRKNV 379 (729)
Q Consensus 307 ~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~ 379 (729)
-|++.+..-|. .+|+-+...+.+..|.++-..+...-... ...|.....-+.+..+ -+++.+.+++-+..-.
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~ 504 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL 504 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence 45555554443 45667778888888888877765432221 4566667777776643 2334444433333222
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCC----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 380 IPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLV----PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVIT 455 (729)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 455 (729)
-...+|..+.......|+.+-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+.++- +...
T Consensus 505 -~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~ 580 (829)
T KOG2280|consen 505 -TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSS 580 (829)
T ss_pred -CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHH
Confidence 34556777777777889888888877532111100 011223334444555555555555555554321 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--HHHHC-CCCCCHHHHHHHHHH
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQE--EMLAK-GFPPDLITYNVLVHG 532 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~--~~~~~-~~~~~~~~~~~li~~ 532 (729)
+.. ...+...|..+|.+..++. |..+ +-..|. +++-.++...+. ...+. .+.+-........+.
T Consensus 581 l~~------~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~ 647 (829)
T KOG2280|consen 581 LFM------TLRNQPLALSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALKTAANA 647 (829)
T ss_pred HHH------HHHhchhhhHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence 111 1223455666666665531 1111 112222 222222222211 10000 011112222233444
Q ss_pred HHhcCCH---HHHH-------HHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004814 533 LCKLGSL---EEAN-------ELLRKMVG-DGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIH 601 (729)
Q Consensus 533 ~~~~g~~---~~A~-------~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 601 (729)
+.+.... ++|. .+.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.
T Consensus 648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~ 723 (829)
T KOG2280|consen 648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT 723 (829)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence 4443331 1111 11111111 1212222344455556777899999998876654 478888888899
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 602 AHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQE 681 (729)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 681 (729)
+++..+++++-+++-+.+. .+.-|.-.+.+|.+.|+.+||.+++-+... .. -...+|.+.|++.+
T Consensus 724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~e 788 (829)
T KOG2280|consen 724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKE 788 (829)
T ss_pred HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHH
Confidence 9999999998777655543 245577788899999999999998865432 11 56778889999999
Q ss_pred HHHHHHH
Q 004814 682 ALRLYKE 688 (729)
Q Consensus 682 A~~~~~~ 688 (729)
|.+.--+
T Consensus 789 Aad~A~~ 795 (829)
T KOG2280|consen 789 AADLAAE 795 (829)
T ss_pred HHHHHHH
Confidence 8876544
No 206
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.94 E-value=0.0049 Score=46.68 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=45.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSA 703 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ 703 (729)
..|.+.+++++|.+.++.+++.+ +.+...|...+.++.+.|++++|.+.+++.+ ...|+......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l--~~~p~~~~~~~ 67 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERAL--ELSPDDPDARA 67 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHH--HHCCCcHHHHH
Confidence 45677777788888887777753 4455667777777777888888888888777 55555544433
No 207
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.93 E-value=0.54 Score=47.20 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLC 639 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 639 (729)
+.+..+.-+...|+...|.++-.+.. -|+...|-..+.+++..++|++-.++-.. + -.++-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 44555666777888888888765552 47888888889999999999887776432 1 13467888888899
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 640 RLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+.|+..+|..+..++ + +..-+..|.+.|+|.+|.+..-+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999988887762 1 244566778899998888775554
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.90 E-value=0.1 Score=48.84 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
..+-..+..+...|++++|...|+++...-+... ..+...++.++.+.|+++.|...|++.++.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444456667788899999999999887644322 234556777888888888888888887764
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.89 E-value=0.0094 Score=54.21 Aligned_cols=90 Identities=22% Similarity=0.346 Sum_probs=60.2
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 004814 185 KKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE 264 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 264 (729)
+.|.++=....+.+|.+.|+..|..+|+.|+.++=+ |.+- | ...+.++-.-| -.+-+-|++
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p-~n~fQ~~F~hy--p~Qq~c~i~ 124 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------P-RNFFQAEFMHY--PRQQECAID 124 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------c-ccHHHHHhccC--cHHHHHHHH
Confidence 456777777888899999999999999999987744 2221 1 11111111111 134556788
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 004814 265 LLWEMQGRGCSPNGVTYNVLITGFSRNGE 293 (729)
Q Consensus 265 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 293 (729)
++++|...|+-||..++..|++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 88888888888888888888888766654
No 210
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.84 E-value=0.021 Score=55.49 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHH
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVKGIRPN----VITYNALINGLCRLRRIDQAYGLFIDMEEEGILP---NKYTYTI 668 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ 668 (729)
|......+.+.|++++|...|+.+++.. |+ ...+..++.+|...|++++|...|+++++.- +. ....+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~k 222 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHH
Confidence 4443333455677777777777776642 32 2355667777777777777777777776541 21 2334445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 669 LINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
++.++...|++++|..+|++++
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5666667777777777777776
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.82 E-value=0.69 Score=46.85 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=107.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-HHH
Q 004814 522 DLITYNVLVHGLCKLGSLEEANELLRKMVGDG-FIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTY-TVL 599 (729)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l 599 (729)
-..+|..+++...+..-.+.|..+|-++.+.+ ..+++..+++++..++ .|+...|..+|+.-+.. -||...| +..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 35667778888888888999999999999988 5678888888888655 68888999999876665 3444443 456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPN--VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
+.-+...++-+.|..+|+..+++ +..+ ..+|..+++--..-|++..|..+=+.|.+. .|...+.....
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~ 542 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFT 542 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHH
Confidence 66777889999999999976654 2223 457889999888999999999888888774 44443333333
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.79 E-value=0.24 Score=52.21 Aligned_cols=88 Identities=18% Similarity=0.167 Sum_probs=54.8
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HH-----
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY-TY----- 666 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~----- 666 (729)
..+...+..-+.+...+.-|-++|.+|-+. ..++......+++++|..+-++..+ +.||.. .|
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhh
Confidence 344444444444555666777777766432 3556667777778887777776665 234432 12
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 667 -----TILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 667 -----~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.-.-.+|.++|+-.||.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 2223577888999999999988863
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.75 E-value=0.028 Score=54.56 Aligned_cols=98 Identities=7% Similarity=0.009 Sum_probs=51.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCC--CCCChhhHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFG--IKPSIVTYNTML 250 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li 250 (729)
.|+..+..+.+.|++++|+..|+.+++.-+... ..++..+...|...|++++|...|+.+++.- -+.....+-.++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444555666666666666666543311 2344455566666666666666666665431 011133333444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004814 251 DSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
..+...|+.++|.++|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4555556666666666655554
No 214
>PRK15331 chaperone protein SicA; Provisional
Probab=96.73 E-value=0.077 Score=46.37 Aligned_cols=90 Identities=11% Similarity=-0.048 Sum_probs=65.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNW 679 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 679 (729)
..-+...|++++|..+|.-+...+. -|..-+..|..++-..+++++|+..|......+ ..|+..+.....++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 3345577888888888887766543 256666777777778888888888887776654 34555666677788888888
Q ss_pred HHHHHHHHHHHH
Q 004814 680 QEALRLYKEMLD 691 (729)
Q Consensus 680 ~~A~~~~~~m~~ 691 (729)
++|+..|+..++
T Consensus 122 ~~A~~~f~~a~~ 133 (165)
T PRK15331 122 AKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHh
Confidence 888888888874
No 215
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.66 E-value=0.84 Score=46.33 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 492 TTQIAGELKLGDTSEAYRLQEEMLAKG---FPPDLITYNVLVHGLCK---LGSLEEANELLRKMVGDGFIPDHITYTSII 565 (729)
Q Consensus 492 ~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 565 (729)
..++-+|....+++..+++.+.+...- +......-...+-++.+ .|+.++|++++..++.....++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445666666666666666665431 11122222233444445 666677777666654444455666665555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 645 (729)
..|... ..+.+ ..|... .++|+..|.+.-+. .||..+--.++..+...|.-.
T Consensus 225 RIyKD~------------~~~s~-~~d~~~-------------ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~ 276 (374)
T PF13281_consen 225 RIYKDL------------FLESN-FTDRES-------------LDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDF 276 (374)
T ss_pred HHHHHH------------HHHcC-ccchHH-------------HHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcc
Confidence 544211 01111 011111 45555555555442 233322112222222222211
Q ss_pred ----HHHHHH----HHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 646 ----QAYGLF----IDMEEEGI---LPNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 646 ----~A~~~~----~~m~~~g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+..++- ..+.++|. ..+...+.+++.++.-.|+.++|.+.+++|..
T Consensus 277 ~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 277 ETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred cchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 112211 11112222 23444556778888888888888888888883
No 216
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=1.4 Score=48.29 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHh--HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN--CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
.+.....-+....+..+++.|+.+...- +..++... .......+.+.|++++|...|-+-+..- .| ..+
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~V 403 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEV 403 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHH
Confidence 3444555666777777777777665432 22222211 2223445566777777777776655421 11 123
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRD 303 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (729)
+.-|....+..+--..++.+.+.|.. +...-..|+..|.+.++.++-.+..+.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~ 456 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISK 456 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhc
Confidence 45555555666666666676666654 333335566777777776665555443
No 217
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.16 Score=44.76 Aligned_cols=70 Identities=23% Similarity=0.283 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML-----DREIEPDYCT 700 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~pd~~~ 700 (729)
....++..+...|++++|..+.+++.... |-|...|..++.+|...|+..+|.+.|+++. +.|+.|...+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44566667777888888888888888764 5567788888888888888888888877764 3477776654
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.57 E-value=0.0074 Score=45.70 Aligned_cols=57 Identities=12% Similarity=0.051 Sum_probs=30.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
+++.+.+++++|...+++++..+|+ ++..+...+.+|.+.|++++|...|++.++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~---------------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD---------------DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc---------------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3455555555555555555555544 34444445555555555555555555555544
No 219
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.51 E-value=0.034 Score=55.48 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=69.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC---------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRK-----GLSP---------TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
.-.+.+.+.|++..|..-|+++.+. +.++ -..+++.+.-+|.+.+++.+|++..++.++.+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3466788889999999988886653 1111 12234455555666666666666666666653 2355
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQ-EALRLYKEML 690 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~-~A~~~~~~m~ 690 (729)
...-.-+.+|...|+++.|+..|+++++. .|+. .+-..|+..-.+....+ ...++|..|.
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555556666666666666666666663 3332 33333433333333322 2355566665
No 220
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.44 E-value=0.01 Score=45.57 Aligned_cols=62 Identities=26% Similarity=0.334 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEE--GIL---PN-KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..++.++...|++++|++.+++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666777777777777777766542 011 11 2356666677777777777777777765
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.32 E-value=0.075 Score=54.42 Aligned_cols=70 Identities=11% Similarity=-0.039 Sum_probs=59.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+...++.+..+|.+.|++++|...++++++.+|+.. .....|..++.+|.+.|++++|+..+++++
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a------------eA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD------------EAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45788899999999999999999999999999988720 001358889999999999999999999999
Q ss_pred HC
Q 004814 201 RN 202 (729)
Q Consensus 201 ~~ 202 (729)
+.
T Consensus 140 el 141 (453)
T PLN03098 140 RD 141 (453)
T ss_pred Hh
Confidence 85
No 222
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.23 E-value=0.53 Score=46.25 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=57.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-----h
Q 004814 529 LVHGLCKLGSLEEANELLRKMVGDGFI-----PDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPTL-----V 594 (729)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-----~ 594 (729)
+..++...+.++++++.|+...+.... ....++..+...|.+..|+++|.-+..+..+. ++..-. .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 344444445555555555555432111 11234555555555555655555444433321 111101 1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVK----GIRP-NVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
+...+.-++...|+...|.+..++..+. |-.+ .......+.+.|...|+.+.|+.-|+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1222333445556665565555554432 2111 11223445566666666666665555443
No 223
>PRK15331 chaperone protein SicA; Provisional
Probab=96.21 E-value=0.085 Score=46.11 Aligned_cols=92 Identities=9% Similarity=-0.047 Sum_probs=67.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
.+--+...|++++|..+|.-+.-.++. +..-|..|..++...+++++|+..|......+ ..|+..+-....++...|+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCC
Confidence 344456788888888888888776655 66667777788888888888888888776655 3455566667778888888
Q ss_pred HHHHHHHHHHHHhC
Q 004814 259 MQEALELLWEMQGR 272 (729)
Q Consensus 259 ~~~A~~~~~~m~~~ 272 (729)
.+.|...|+...+.
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 88888888777764
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.18 E-value=2.7 Score=46.31 Aligned_cols=184 Identities=14% Similarity=0.094 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
.-....-+.++.+...++-|+.+.+.-- .+++ .-..+...-+.-+.+.|++++|..-|-+.+..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~~-~d~d--------------~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~- 397 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQH-LDED--------------TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF- 397 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhcC-CCHH--------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-
Confidence 3445567778888888888887665411 1111 12334444555567899999999888777643
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
. ++ ..++.-+.+..+..+-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+.-. .|.. ..-...
T Consensus 398 -l-e~---s~Vi~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~ 468 (933)
T KOG2114|consen 398 -L-EP---SEVIKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVET 468 (933)
T ss_pred -C-Ch---HHHHHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHH
Confidence 1 22 2456666666677777788888888884 466667889999999999998877776554 2211 111345
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 284 LITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
.+..+.+.+-.++|.-+-.+... +...... .+-..|++++|++.+..+.
T Consensus 469 al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 469 ALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence 66777777777887776655433 2333333 3456788999999887664
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.17 E-value=0.8 Score=48.45 Aligned_cols=56 Identities=18% Similarity=0.070 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
+..+...+...+.+...+.-|-++|..|-. ...++..+...+++++|+.+-+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 334444444555555666666666666533 22355566667777777776665443
No 226
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.13 E-value=1.3 Score=41.98 Aligned_cols=81 Identities=15% Similarity=0.030 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.|+.. ....+.|++++|...|+.+..+.|. ++.+..+...++-++.+.+++++|+..+++..+.-+.
T Consensus 37 LY~~g-~~~L~~gn~~~A~~~fe~l~~~~p~------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~ 103 (254)
T COG4105 37 LYNEG-LTELQKGNYEEAIKYFEALDSRHPF------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT 103 (254)
T ss_pred HHHHH-HHHHhcCCHHHHHHHHHHHHHcCCC------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC
Confidence 34443 3456788999999999988877665 2345777888888899999999999999999886654
Q ss_pred CChHhHHHHHHHHH
Q 004814 206 PDVKNCNRIIKVLR 219 (729)
Q Consensus 206 ~~~~~~~~ll~~l~ 219 (729)
-....|..-+.++.
T Consensus 104 ~~n~dY~~YlkgLs 117 (254)
T COG4105 104 HPNADYAYYLKGLS 117 (254)
T ss_pred CCChhHHHHHHHHH
Confidence 33344555555554
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.10 E-value=0.025 Score=43.43 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
..+|+.+..++.+.|++++|+..++++++. -... +.+......++..++.+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~-------~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDI-EEQL-------GDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHT-------TTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHH-------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467899999999999999999999998875 2100 001111355677788888888888888888887764
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.07 E-value=1.4 Score=41.90 Aligned_cols=198 Identities=23% Similarity=0.145 Sum_probs=114.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAK-GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIH- 566 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~- 566 (729)
.........+...+....+...+...... ..+.....+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555666666666665555432 223344555555556666666666776666666543332 111222222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGL--SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP-NVITYNALINGLCRLRR 643 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~ 643 (729)
.+...|+++.|...+++...... ......+......+...++.++|...+.++.... .. ....+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHccc
Confidence 56677777777777777654210 0123333344444566777777777777777652 22 35566777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 644 IDQAYGLFIDMEEEGILPN-KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+++|...+...... .|+ ...+..+...+...|.++++...+.+..
T Consensus 218 ~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 218 YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 78888877777764 233 3444444555556667788887777777
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.03 E-value=1 Score=45.69 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
+-..+.+++.+..-.|+.++|.+..++|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444455566666666666666666666654
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.071 Score=53.28 Aligned_cols=98 Identities=18% Similarity=0.097 Sum_probs=47.7
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCC-------cchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSS-------CVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 204 (729)
..+.+.|+|..|..-|++++..-... ...+. ..-..++..|+-+|.|.+.+.+|++.-++.++.++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~-------~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~ 288 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYR-------RSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP 288 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhcc-------ccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 35677888888888888876542110 00000 00122333444444555555555555555554443
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
. |+.+...-..++...|+++.|+..|+++++.
T Consensus 289 ~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 289 N-NVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred C-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 2 4444444444444445555555555544443
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.96 E-value=0.24 Score=52.91 Aligned_cols=118 Identities=17% Similarity=0.111 Sum_probs=66.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChHhHHH-HHHHHHHCCChhHHHHHHHHHHhC--CC-CCChhhHHHHHHHHHhcCCHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPDVKNCNR-IIKVLRDNGFSVKAREVYRMMGEF--GI-KPSIVTYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~l~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~li~~~~~~g~~~~ 261 (729)
....+.|.++++.+.+. .|+...|.. -.+.+...|+.++|++.|+..... .. +.....+--+...++-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 34566666666666664 244444433 344556667777777777754431 00 1122334445566777788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCCH-------HHHHHHHHHHHh
Q 004814 262 ALELLWEMQGRGCSPNGVTYNVLI-TGFSRNGEL-------EQARGLIRDMLK 306 (729)
Q Consensus 262 A~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~~ 306 (729)
|.+.|..+.+.. .-....|.-+. ..+...|+. ++|.++|.+...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888877652 11233333332 233455666 777788777654
No 232
>PRK11906 transcriptional regulator; Provisional
Probab=95.95 E-value=0.58 Score=48.24 Aligned_cols=147 Identities=8% Similarity=0.083 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004814 538 SLEEANELLRKMVGD-GFIPD-HITYTSIIHASLE---------MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR 606 (729)
Q Consensus 538 ~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 606 (729)
..+.|..+|.+.+.. ...|+ ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467788899988822 23444 3455555544332 224557777888888876 67888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 004814 607 GRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY---TYTILINENCNAGNWQEA 682 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A 682 (729)
|+++.|...|+++... .|| ...|......+.-.|+.++|.+.+++..+. .|... .....++.|+.. ..++|
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhh
Confidence 8899999999999885 454 456777777778889999999999998774 44432 223334455544 56778
Q ss_pred HHHHHHHH
Q 004814 683 LRLYKEML 690 (729)
Q Consensus 683 ~~~~~~m~ 690 (729)
+++|-+-.
T Consensus 427 ~~~~~~~~ 434 (458)
T PRK11906 427 IKLYYKET 434 (458)
T ss_pred HHHHhhcc
Confidence 87776644
No 233
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=0.53 Score=45.71 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=89.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 465 KMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK---GFPPDLITYNVLVHGLCKLGSLEE 541 (729)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 541 (729)
..|+..+|-..++++++.- +.|..++...-.++.-.|+.+.-...+++++.. +.|-....-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 4677777777777777652 335566666666777777777777777776654 222222333344445566777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 542 ANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT---LVTYTVLIHAHAARGRLELAFMYFSE 618 (729)
Q Consensus 542 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (729)
|++.-++..+.+. .|...-.+..+.+...|+..++.++..+-...=-..+ ...|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 7777777776652 3555666666667777777777777654332200000 11122222234445677777777764
Q ss_pred H
Q 004814 619 M 619 (729)
Q Consensus 619 ~ 619 (729)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 234
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.88 E-value=0.052 Score=47.83 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=22.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDM 654 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 654 (729)
++..+...|++++|.++.+.+.... +.|...|..++.+|...|+..+|.+.|+++
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3333444444444444444444431 113334444444444444444444444443
No 235
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.87 E-value=3.1 Score=44.24 Aligned_cols=186 Identities=13% Similarity=0.061 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVH 531 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~ 531 (729)
+..+|..-+..-.+.|+.+...-+|++..-.- ..=...|-..+.-....|+.+-|..++....+--.+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 45677777777788888888888888776421 11122333344444455888888777766655433333322221222
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHH---HHHHHHHCCCCCChhhHHHHHHH-----
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRD---LFNNMLRKGLSPTLVTYTVLIHA----- 602 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~---~~~~~~~~~~~~~~~~~~~l~~~----- 602 (729)
..-..|+++.|..+++.+.+.- |+.. .-..-+....+.|+.+.+.. ++...... ..+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHH
Confidence 2334678999999999888763 4433 22223445567788777773 33332222 2222222222222
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR 643 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 643 (729)
+.-.++.+.|..++.++.+. .+++...|..++......+.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence 33467889999999999886 55677778888777666653
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.74 E-value=0.64 Score=48.02 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 597 TVLIHAHAARGRLELAFMYFSEMQVKGIR-PNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..+..++.+.|+.+||++.+++|.+.... .+......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34555555667777777777777654211 1223455666777777777777777766544
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.71 E-value=0.18 Score=51.77 Aligned_cols=65 Identities=14% Similarity=0.076 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 556 PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL----VTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
.+...++.+..+|.+.|++++|+..|++.++.+ |+. .+|..+..+|.+.|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356678888899999999999999999988874 543 35888899999999999999999998875
No 238
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.70 E-value=0.13 Score=48.96 Aligned_cols=64 Identities=11% Similarity=0.013 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-C-ChHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL-P-DVKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
+..+.+|...+...|++++|..+|..+.+.-+. | -+.++..|..++.+.|+.++|...|+++++
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 334444555555555555555555555443221 0 112333344444444444444444444444
No 239
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=1.5 Score=42.33 Aligned_cols=119 Identities=17% Similarity=0.095 Sum_probs=47.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 500 KLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRD 579 (729)
Q Consensus 500 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 579 (729)
..|++.+|..+|....... +.+...--.++.+|...|+.+.|..++..+-..-..........-+..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3444444444444444332 222333334445555555555555555544332111111111122222333333333333
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 580 LFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
+-.+.-.. +.|...-..+...+...|+.++|.+.+-.+.+
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33322221 22444444455555555555555554444443
No 240
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.58 E-value=0.45 Score=39.40 Aligned_cols=90 Identities=21% Similarity=0.100 Sum_probs=49.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCH---HHHHHHHHHHHhcC
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-GIRPNV---ITYNALINGLCRLR 642 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~---~~~~~l~~~~~~~g 642 (729)
+....|+++.|++.|.+.+..- +.....||.-..++.-+|+.++|++=+++..+. |.. .. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3455566666666666665542 445556666666666666666666666666554 211 11 12333334455556
Q ss_pred CHHHHHHHHHHHHHcC
Q 004814 643 RIDQAYGLFIDMEEEG 658 (729)
Q Consensus 643 ~~~~A~~~~~~m~~~g 658 (729)
+.+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666665554
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.65 Score=44.70 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=73.4
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhH
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNC 211 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 211 (729)
..+...|++.+|..+|..++...+. +..+--.++.+|...|+++.|..++..+...--.......
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~---------------~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l 206 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE---------------NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL 206 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc---------------cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH
Confidence 3455666777777777766666554 2334455666777777777777777666543211111111
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR--GCSPNGVTYNVLITGFS 289 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~li~~~~ 289 (729)
..-+..+.+.....+...+-++.... +.|...-..+...+...|+.++|.+.+-.+.++ |.. |...-..++..+.
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~ 283 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHH
Confidence 12233444444444444444444332 335555555666666666666666655555443 222 3334444444444
Q ss_pred hCC
Q 004814 290 RNG 292 (729)
Q Consensus 290 ~~g 292 (729)
-.|
T Consensus 284 ~~g 286 (304)
T COG3118 284 AFG 286 (304)
T ss_pred hcC
Confidence 444
No 242
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.47 E-value=0.45 Score=50.14 Aligned_cols=128 Identities=18% Similarity=0.131 Sum_probs=56.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH
Q 004814 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR 395 (729)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 395 (729)
.+.++..+.+.|..+.|+++-.+-.. -.+...+.|+++.|.++.++. .+...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 44445555555555555554322111 123334455555555432221 344555555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 396 SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREF 475 (729)
Q Consensus 396 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (729)
.|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 5555555555554322 2334444555555555555555544443 122333333344555555444
Q ss_pred H
Q 004814 476 F 476 (729)
Q Consensus 476 ~ 476 (729)
+
T Consensus 425 L 425 (443)
T PF04053_consen 425 L 425 (443)
T ss_dssp H
T ss_pred H
Confidence 4
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.46 E-value=2.2 Score=39.79 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLC 359 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 359 (729)
.|.-...+|...+++++|..-+.+..+.- +.+ ..+.... ..++.|.-+.+++.+. .--+..|+--..+|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Enn-rslfhAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENN-RSLFHAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hhc-ccHHHHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 34444556666667777766666655321 111 1111111 2233444444444432 112234455556666
Q ss_pred hcCCHHHHHHHHHHH
Q 004814 360 KWGRVSDARHRFFEM 374 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~ 374 (729)
.+|..+.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 666666665555543
No 244
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.45 E-value=1.2 Score=37.10 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (729)
..++.+.+.|+-+.-.+++..+.+.+ .+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 44455555666666666666655422 45566666666666666666666666666666653
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.45 E-value=2 Score=44.41 Aligned_cols=160 Identities=14% Similarity=0.081 Sum_probs=111.1
Q ss_pred HHHHHHHHh-----cCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCC
Q 004814 492 TTQIAGELK-----LGDTSEAYRLQEEMLAK-GFPP-DLITYNVLVHGLCKL---------GSLEEANELLRKMVGDGFI 555 (729)
Q Consensus 492 ~~li~~~~~-----~g~~~~A~~l~~~~~~~-~~~~-~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~ 555 (729)
..++.+... ....+.|..+|.+.... ...| ....|..+..++... ....+|.++-++..+.+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~- 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT- 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-
Confidence 445555443 22457788889888822 1233 356666666555432 235677888888888874
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHH
Q 004814 556 PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI---TYN 632 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~---~~~ 632 (729)
.|......+..+..-.++.+.|...|++....+ |....+|........-.|+.++|.+.+++..+. .|... ...
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~ 412 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIK 412 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHH
Confidence 488888888888888888999999999999875 445677777777888899999999999998875 34322 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 633 ALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 633 ~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..++.|+.. .+++|++++-+-.+
T Consensus 413 ~~~~~~~~~-~~~~~~~~~~~~~~ 435 (458)
T PRK11906 413 ECVDMYVPN-PLKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHcCC-chhhhHHHHhhccc
Confidence 445566665 56888888765443
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.36 E-value=0.74 Score=45.27 Aligned_cols=228 Identities=15% Similarity=0.138 Sum_probs=146.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHh
Q 004814 463 SCKMGNLSMAREFFNEMLRKG--LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK--GFPPD---LITYNVLVHGLCK 535 (729)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~---~~~~~~li~~~~~ 535 (729)
+....+.++|+..+.+.+.+- ......++..+..+.+..|.+++++..--..+.. ..... ...|..+..++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999998877651 0111234555567777888888776543322221 11111 2344445555555
Q ss_pred cCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---C--CChhhHHHHHHHHHHc
Q 004814 536 LGSLEEANELLRKMVGD-GFIP---DHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL---S--PTLVTYTVLIHAHAAR 606 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~~ 606 (729)
..++.+++.+-..-... |..| -.....++..++...+.++++++.|+...+... . ....++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55555665555544432 2222 113344567778888899999999998876411 1 1245788999999999
Q ss_pred CCHHHHHHHHHHHHHC----CCCCCHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHH
Q 004814 607 GRLELAFMYFSEMQVK----GIRPNVIT-----YNALINGLCRLRRIDQAYGLFIDMEE----EGILPN-KYTYTILINE 672 (729)
Q Consensus 607 g~~~~A~~~~~~~~~~----g~~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~~~~~l~~~ 672 (729)
.|+++|.-+..++.+. ++..-..- ...|.-++...|++.+|.+.-++..+ .|-.+- ......+.++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999999988877653 33211122 34455678889999999998888765 342221 2244577899
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004814 673 NCNAGNWQEALRLYKEML 690 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~ 690 (729)
|...|+.|.|..-|+++.
T Consensus 256 yR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhcccHhHHHHHHHHHH
Confidence 999999999999999997
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.35 E-value=0.82 Score=48.94 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=96.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHI------TYTSIIHASL----EMGDLRRGRDLFNNMLRKGLSPTLVTYT 597 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 597 (729)
.++....-.|+-+.+++.+.+..+.+-...+. .|..++..++ ...+.+.|.++++.+.+. -|+...|.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl 270 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL 270 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence 34444445566666666666555432111111 2233332222 245677888888888876 46655554
Q ss_pred HH-HHHHHHcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHH
Q 004814 598 VL-IHAHAARGRLELAFMYFSEMQVKG--I-RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTIL-INE 672 (729)
Q Consensus 598 ~l-~~~~~~~g~~~~A~~~~~~~~~~g--~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~ 672 (729)
.. ...+...|++++|++.|+++.... . ......+--++..+.-.+++++|.+.|..+.+.. .-+..+|.-+ +-+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 33 345667888888888888765421 1 1134456667778888889999999999888753 3334444433 334
Q ss_pred HHhcCCH-------HHHHHHHHHHH
Q 004814 673 NCNAGNW-------QEALRLYKEML 690 (729)
Q Consensus 673 ~~~~g~~-------~~A~~~~~~m~ 690 (729)
+...|+. ++|.+++++..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 4557777 88888888765
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.31 E-value=0.36 Score=41.25 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
...+-.-+....+.|++++|...|+.+..+-|.+ ..+..+...|+.+|.+.|++++|+..+++.++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g------------~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG------------EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3344444555678899999999999988877652 3356777789999999999999999999999987
Q ss_pred CCCChHhHHHHHHHH
Q 004814 204 LLPDVKNCNRIIKVL 218 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l 218 (729)
+.--..-|-..+.++
T Consensus 78 P~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 78 PTHPNVDYAYYMRGL 92 (142)
T ss_pred CCCCCccHHHHHHHH
Confidence 652223344444443
No 249
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.20 E-value=2.1 Score=39.13 Aligned_cols=175 Identities=15% Similarity=0.077 Sum_probs=100.6
Q ss_pred hHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHC
Q 004814 142 SAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDN 221 (729)
Q Consensus 142 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 221 (729)
-|+--|.+.+...|. -+.+|+.|.--+...|+++.|.+.|+...+.++.-+-...|.-+ .+.--
T Consensus 83 LAR~DftQaLai~P~---------------m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~ 146 (297)
T COG4785 83 LARNDFSQALAIRPD---------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYG 146 (297)
T ss_pred HHhhhhhhhhhcCCC---------------cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeec
Confidence 344445556666555 47889999999999999999999999999987653333333333 34456
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH--hcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004814 222 GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC--KEGEMQEALELL-WEMQGRGCSPNGVTYNVLITGFSRNGELEQAR 298 (729)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 298 (729)
|++..|.+-|-..-+.+ +.|+ |.+ +..|. ..-++.+|..-+ ++.... |..-|...|..|.- |+.. .+
T Consensus 147 gR~~LAq~d~~~fYQ~D-~~DP--fR~-LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e 216 (297)
T COG4785 147 GRYKLAQDDLLAFYQDD-PNDP--FRS-LWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EE 216 (297)
T ss_pred CchHhhHHHHHHHHhcC-CCCh--HHH-HHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HH
Confidence 88888887777766554 3333 222 22233 234566776544 333332 55555554443321 2111 12
Q ss_pred HHHHHHHhCCC------ccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 299 GLIRDMLKLGL------KVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 299 ~~~~~m~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.+++++....- +.-..||.-+...+...|+.++|..+|+-....
T Consensus 217 ~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 217 TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 23333332211 011346666777777777778877777776654
No 250
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.17 E-value=0.3 Score=40.36 Aligned_cols=91 Identities=19% Similarity=0.132 Sum_probs=55.7
Q ss_pred HHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH
Q 004814 133 ILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN 212 (729)
Q Consensus 133 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (729)
+++..|+++.|++.|.+++..-|. ...+|+.-+++|--+|+.++|++-+++.++..-...-..|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~---------------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacq 116 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE---------------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQ 116 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc---------------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHH
Confidence 467777888888888777776554 35567777777777777777777777777632111222222
Q ss_pred H---HHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 213 R---IIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 213 ~---ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
. -...|...|+-+.|..=|+...+.|
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 2 2234555566666666666555544
No 251
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.09 E-value=1.7 Score=36.28 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIE 695 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 695 (729)
+.......++.+.+.|+-|+-.+++.++.+.+ .+++.....+..+|.+.|+..+|.++++++-++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44455667778888999999888888887644 788888889999999999999999999999888764
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.08 E-value=0.34 Score=40.98 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVG---------------DGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (729)
..++..++.++++.|+.+....+++..-. ....|+..+..+++.+|+..|++..|+++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34555566666666666655555544321 122344445555555555555555555555544433
Q ss_pred -CCCCChhhHHHHHH
Q 004814 588 -GLSPTLVTYTVLIH 601 (729)
Q Consensus 588 -~~~~~~~~~~~l~~ 601 (729)
+++-+..+|..|+.
T Consensus 82 Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLE 96 (126)
T ss_pred cCCCCCHHHHHHHHH
Confidence 33334444444443
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.04 E-value=0.067 Score=35.54 Aligned_cols=39 Identities=10% Similarity=0.040 Sum_probs=27.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
++..++..|.+.|++++|.++|+++++..+. |...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 5666777888888888888888888877654 55544443
No 254
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.96 E-value=0.29 Score=41.37 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHH-hhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVL-IGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
|..+++.++.++++.|+.+....++++....+.++....- ....-.-.++.+++..++.+|+.+|++..|+++.+...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs 79 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFS 79 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5678999999999999999999999888776654210000 00000111234444444444444445555544444443
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.81 E-value=3.3 Score=38.70 Aligned_cols=205 Identities=14% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 455 TYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC 534 (729)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~ 534 (729)
.|..-..+|....++++|...+.+..+- ...+...|. ..+.++.|.-+.+++.+. +.-...|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444445555566666666655555431 111111111 112233444444444332 122334444455566
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCChhhHHHHHHHHHHcCCH
Q 004814 535 KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK---G--LSPTLVTYTVLIHAHAARGRL 609 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~ 609 (729)
.+|.++.|-..+++.-+. ....++++|++++++.... + ...-...+......+.+..++
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666655555544321 1223344444444433321 0 000112233334445555555
Q ss_pred HHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 004814 610 ELAFMYFSEMQVK----GIRPNV-ITYNALINGLCRLRRIDQAYGLFIDMEEEG---ILPNKYTYTILINENCNAGNWQE 681 (729)
Q Consensus 610 ~~A~~~~~~~~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~l~~~~~~~g~~~~ 681 (729)
++|-..+.+-... .-.++. ..|-..+-.|....++..|.+.+++--+.+ -+.+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 5555444332210 011111 123444444555567777777776644321 122344555566554 4566666
Q ss_pred HHHHH
Q 004814 682 ALRLY 686 (729)
Q Consensus 682 A~~~~ 686 (729)
+.+++
T Consensus 246 ~~kvl 250 (308)
T KOG1585|consen 246 IKKVL 250 (308)
T ss_pred HHHHH
Confidence 55443
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.79 E-value=1.2 Score=43.37 Aligned_cols=156 Identities=12% Similarity=0.047 Sum_probs=108.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCC
Q 004814 498 ELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYT----SIIHASLEMGD 573 (729)
Q Consensus 498 ~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~ 573 (729)
....|+..+|...++++++. +|.|..++.-.-++|.-.|+.+.-...+++++.. ..+|...|. .+.-++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34577888888888888775 6888888888888888888888888888887754 234443332 23344567888
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK---GIRPNVITYNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 650 (729)
+++|.+.-++..+.+ +-|.-.-.++...+...|+.+++.++..+-... +...-...|-...-.+...+.++.|+++
T Consensus 191 y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 191 YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 899988888888775 556666777777788888899988887765442 1111122344445556677888888888
Q ss_pred HHHHHH
Q 004814 651 FIDMEE 656 (729)
Q Consensus 651 ~~~m~~ 656 (729)
|+.-+-
T Consensus 270 yD~ei~ 275 (491)
T KOG2610|consen 270 YDREIW 275 (491)
T ss_pred HHHHHH
Confidence 876543
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.77 E-value=0.74 Score=48.51 Aligned_cols=129 Identities=18% Similarity=0.119 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 360 (729)
.+.++..+.+.|..+.|.++..+-. .-.....+.|+++.|.++.++. .+...|..|.+...+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4555555555555555555432211 1223344555555555543221 245556666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 004814 361 WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQL 440 (729)
Q Consensus 361 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 440 (729)
+|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -++....++.-.|+.++..++
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~l 424 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDL 424 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHH
Confidence 6666666655554432 4445555555666555555554444443 123333344444555555544
Q ss_pred HH
Q 004814 441 KE 442 (729)
Q Consensus 441 ~~ 442 (729)
+.
T Consensus 425 L~ 426 (443)
T PF04053_consen 425 LI 426 (443)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 258
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.68 E-value=2.2 Score=37.02 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh
Q 004814 129 TILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV 208 (729)
Q Consensus 129 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 208 (729)
.++..+...+....+..+++.++..++ .++.+.+.++..|++.+ .++.++.+.. . .+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~---------------~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~ 69 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS---------------ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNH 69 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc---------------cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---ccc
Confidence 445555555555555555555554322 13456666666666543 2333333331 1 122
Q ss_pred HhHHHHHHHHHHCCChhHHHHHHHHH
Q 004814 209 KNCNRIIKVLRDNGFSVKAREVYRMM 234 (729)
Q Consensus 209 ~~~~~ll~~l~~~g~~~~A~~~~~~~ 234 (729)
.....++..|.+.+.++++..++.++
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 22334555555555555555555544
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.66 E-value=0.5 Score=45.00 Aligned_cols=88 Identities=16% Similarity=-0.001 Sum_probs=50.9
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIR--PNVITYNALINGLCRLRRIDQAYGLFIDMEEEG--ILPNKYTYTILINENCNAGN 678 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~ 678 (729)
+.+.|++.+|..-|...++.... -....+-.|+.++...|++++|...|..+.+.- -+--+..+..|..+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 34455566666666666665211 123345566666667777777776666666531 01123455666666666777
Q ss_pred HHHHHHHHHHHH
Q 004814 679 WQEALRLYKEML 690 (729)
Q Consensus 679 ~~~A~~~~~~m~ 690 (729)
.++|...|++.+
T Consensus 231 ~d~A~atl~qv~ 242 (262)
T COG1729 231 TDEACATLQQVI 242 (262)
T ss_pred HHHHHHHHHHHH
Confidence 777777777666
No 260
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.63 E-value=4.1 Score=38.49 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=48.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 004814 568 SLEMGDLRRGRDLFNNMLRKGLSP-TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRID 645 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~ 645 (729)
+...++.+.|...+....... +. ....+..+...+...++++.|...+...... .|+ ...+..+...+...+..+
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 253 (291)
T COG0457 177 LEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYE 253 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHH
Confidence 445556666666666555542 22 3455555566666666666666666666654 222 333344444444555667
Q ss_pred HHHHHHHHHHHc
Q 004814 646 QAYGLFIDMEEE 657 (729)
Q Consensus 646 ~A~~~~~~m~~~ 657 (729)
++...+.+....
T Consensus 254 ~~~~~~~~~~~~ 265 (291)
T COG0457 254 EALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHh
Confidence 777666666653
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.61 E-value=5.2 Score=39.59 Aligned_cols=165 Identities=15% Similarity=0.131 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 004814 524 ITYNVLVHGLCKLGSL---EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI 600 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 600 (729)
.++..++.+|...+.. ++|..+++.+...... .+.++..-+..+.+.++.+++.+.+.+|+..- .-....+...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 3556667777766653 4456666666554322 24445455566666788888888888887752 21233444444
Q ss_pred HHHH--HcCCHHHHHHHHHHHHHCCCCCCHH-HHH----HHHHHHHhcC------CHHHHHHHHHHHHH-cCCCCCHHHH
Q 004814 601 HAHA--ARGRLELAFMYFSEMQVKGIRPNVI-TYN----ALINGLCRLR------RIDQAYGLFIDMEE-EGILPNKYTY 666 (729)
Q Consensus 601 ~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~-~~~----~l~~~~~~~g------~~~~A~~~~~~m~~-~g~~p~~~~~ 666 (729)
..+- .......|...+..+....+.|... ... ..+......+ +++....+++...+ .+.+.+..+-
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~ 242 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAA 242 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 4432 1233456666666666554454443 111 1111122221 14444455553333 2223333332
Q ss_pred ---HHH----HHHHHhcCCHHHHHHHHHHHH
Q 004814 667 ---TIL----INENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 667 ---~~l----~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.++ +..+.++++|++|.+.|+-.+
T Consensus 243 ~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 243 SAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 233 245678999999999998665
No 262
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.54 E-value=7.8 Score=41.33 Aligned_cols=396 Identities=13% Similarity=0.087 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHHCCCCCChHh-HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHH
Q 004814 189 VEQCLLVFNKMLRNGLLPDVKN-CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC-KEGEMQEALELL 266 (729)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~ 266 (729)
++.+..++..++.. .|-..- |-..+..=.+.|..+.+.++|++.+. |++-.+..|......++ ..|+.+...+.|
T Consensus 61 ~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 61 VDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 35556666666643 244442 44455555677888888888888876 45666667766666555 356777777888
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH---hC------CCHHHHHHH
Q 004814 267 WEMQGR-GCS-PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS---EK------GLLVEALNL 335 (729)
Q Consensus 267 ~~m~~~-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~---~~------g~~~~A~~~ 335 (729)
+..... |.. -....|...|..-..++++.....++++.++.- ...++..-.-|. +. -..+++.++
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l 213 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELIQL 213 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHHHH
Confidence 877654 211 134467777777777888888888888887642 112222222111 11 112222222
Q ss_pred HHHHHHC---C-CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004814 336 EEEMVTR---G-VAPTLATYNILIYGLCK-WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELR 410 (729)
Q Consensus 336 ~~~m~~~---g-~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 410 (729)
-.....+ + ..+.......-+..-.. .+..+++...+.+... ..-..+...-...+....+++-.
T Consensus 214 ~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~I 282 (577)
T KOG1258|consen 214 RSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGI 282 (577)
T ss_pred hhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhc
Confidence 2111110 0 00011111111111000 0111122211111111 00111222222333333343333
Q ss_pred hCC---C----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 411 SRN---L----VPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 411 ~~~---~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 483 (729)
... + .++..+|..-+.--.+.|+.+.+.-++++..-- +..-...|-..+......|+.+-|..++....+..
T Consensus 283 krpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 283 KRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred cccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 221 1 224567777777778889999988888887642 22334556566666666688888888887776654
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCCCCCHHH
Q 004814 484 LQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEAN---ELLRKMVGDGFIPDHIT 560 (729)
Q Consensus 484 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~p~~~~ 560 (729)
.+-.+.+...-.......|+++.|..+++.+...- +.-...-..-+....+.|+.+.+. +++....... . +...
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~-~-~~~i 438 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK-E-NNGI 438 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc-c-Ccch
Confidence 43333332222233446779999999999988763 333334334455566778887777 4443333221 1 2222
Q ss_pred HHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004814 561 YTSIIHA-----SLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG 607 (729)
Q Consensus 561 ~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 607 (729)
...+.-- +.-.++.+.|..++.++... .+++...|..++......+
T Consensus 439 ~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 439 LEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2222211 34467899999999999876 4677788888877666554
No 263
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.40 E-value=0.095 Score=34.79 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
++..+..+|.+.|++++|++.|++++ ...|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l--~~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRAL--ALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HHCcCCH
Confidence 45555666666666666666666666 4455443
No 264
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.34 E-value=10 Score=41.80 Aligned_cols=272 Identities=15% Similarity=0.051 Sum_probs=151.3
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHh
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDG-----LCRYGDLEVAQQLKENMIN-------QGILPDVITYTIMVNGSCK 465 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~ 465 (729)
+..+|.+.++...+.| +......+..+ +....+.+.|..++..+.+ .| .......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 4678889998888877 33333333333 3455689999999998877 44 33456667777776
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----h
Q 004814 466 MG-----NLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK-LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC----K 535 (729)
Q Consensus 466 ~g-----~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~----~ 535 (729)
.. +.+.|..++.+..+.|.. +.......+..... ..+...|.++|....+.|. ...+-.+..+|. -
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGV 376 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCc
Confidence 43 567788888888887643 43333222221112 3467788888888888773 333333333332 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-HHH---HH----cC
Q 004814 536 LGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLI-HAH---AA----RG 607 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~---~~----~g 607 (729)
..+...|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+...|.+ ...+-...+ ... .. ..
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence 236778888888888877 3332222223333333 6777777666666665532 222111111 111 11 12
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCH
Q 004814 608 RLELAFMYFSEMQVKGIRPNVITYNALINGLCRL----RRIDQAYGLFIDMEEEGILPNKYTYTILINENCN----AGNW 679 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~ 679 (729)
+.+.+...+.+....| +......+.+.|... .+.+.|...+......+ ......+...+.. .. +
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~ 525 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L 525 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence 4556666666666554 555556666655443 24666777777666654 2222223332221 22 5
Q ss_pred HHHHHHHHHHH
Q 004814 680 QEALRLYKEML 690 (729)
Q Consensus 680 ~~A~~~~~~m~ 690 (729)
..|.+++++..
T Consensus 526 ~~a~~~~~~~~ 536 (552)
T KOG1550|consen 526 HLAKRYYDQAS 536 (552)
T ss_pred HHHHHHHHHHH
Confidence 66666666665
No 265
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.34 E-value=6 Score=39.16 Aligned_cols=123 Identities=11% Similarity=0.075 Sum_probs=59.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHH-------HHHHHHHHCC-ChhHHHHHHHHHHhC----C----CCCCh----
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCN-------RIIKVLRDNG-FSVKAREVYRMMGEF----G----IKPSI---- 243 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~ll~~l~~~g-~~~~A~~~~~~~~~~----~----~~~~~---- 243 (729)
.++|+++.|...+.++.......++.... .+...+.+.+ ++++|..++++..+. + ..++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46788999999999887643122322222 2333334555 777776666655432 0 11111
Q ss_pred -hhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 244 -VTYNTMLDSFCKEGEMQ---EALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 244 -~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
.+...++.+|...+..+ +|..+++.+... .+-....+..-+..+.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 13344455555444433 334444444332 1111233333344444455556666666665543
No 266
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.27 E-value=2.7 Score=36.53 Aligned_cols=84 Identities=10% Similarity=0.073 Sum_probs=42.3
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 004814 213 RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNG 292 (729)
Q Consensus 213 ~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 292 (729)
.++..+.+.+.......+++.+.+.+ ..+...++.++..|++.+ .++..+.+.. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 45555555556666666666665554 345556666666666542 2333333331 012222333455555555
Q ss_pred CHHHHHHHHHHH
Q 004814 293 ELEQARGLIRDM 304 (729)
Q Consensus 293 ~~~~A~~~~~~m 304 (729)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 267
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.99 E-value=15 Score=42.54 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=19.0
Q ss_pred CCHhHHHHHHHHHHHcC--CHHHHHHHHHHHhh
Q 004814 381 PDIISYNTLLYGYCRSG--NIGEAFLLFDELRS 411 (729)
Q Consensus 381 ~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~ 411 (729)
|+ .-...+|..|.+.+ .+++|+....+...
T Consensus 789 ~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 789 PD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred cc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 44 34455667777776 66777776666654
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.80 E-value=6.3 Score=37.45 Aligned_cols=53 Identities=17% Similarity=0.018 Sum_probs=25.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPN---VITYNALINGLCRLRRIDQAYGLFID 653 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 653 (729)
..-|.+.|.+..|..-+++|++. .+-+ ...+-.+..+|.+.|..++|.+.-+-
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 34455555555555555555554 1111 22233444555556655555554433
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.24 E-value=12 Score=39.09 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=26.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLS-PTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
+..++-+.|+.++|.+.++++.+..-. .+..+...|+.++...+++.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 334444455555555555555443201 11224444555555555555555555554
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.11 E-value=3.3 Score=37.43 Aligned_cols=92 Identities=21% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPN-----VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAG 677 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 677 (729)
+.+.|++++|..-|.++++. +++. .+.|..-..++.+.+.++.|+.-..+.++.+ +.......--..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence 44555555555555555553 1111 2233344445556666666666666655543 111122223344555666
Q ss_pred CHHHHHHHHHHHHHCCCCCCH
Q 004814 678 NWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 678 ~~~~A~~~~~~m~~~~~~pd~ 698 (729)
++++|+.-|++++ ...|..
T Consensus 183 k~eealeDyKki~--E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKIL--ESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHH--HhCcch
Confidence 6666666666666 444543
No 271
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.10 E-value=0.64 Score=44.09 Aligned_cols=69 Identities=22% Similarity=0.366 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 225 VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG----------------EMQEALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------------~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
+---..++.|.+.|+..|..+|+.|++.+-|.. +-+-+++++++|...|+.||..+-..|++++
T Consensus 89 eFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~F 168 (406)
T KOG3941|consen 89 EFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAF 168 (406)
T ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHh
Confidence 333344455555555556666665555543311 2233566666666666666666666666666
Q ss_pred HhCCC
Q 004814 289 SRNGE 293 (729)
Q Consensus 289 ~~~g~ 293 (729)
.+.+-
T Consensus 169 Gr~~~ 173 (406)
T KOG3941|consen 169 GRWNF 173 (406)
T ss_pred ccccc
Confidence 65553
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.10 E-value=0.2 Score=31.41 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+|..|..+|.+.|++++|+++|++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999999966
No 273
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.96 E-value=6.1 Score=34.87 Aligned_cols=132 Identities=13% Similarity=0.097 Sum_probs=68.0
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HH--HHHHHHHHhcCCH
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLV-TYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI-TY--NALINGLCRLRRI 644 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~--~~l~~~~~~~g~~ 644 (729)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|... -. ..-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44555666666666665554321111 11112223445666666666666665543333222 01 1112235566777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 645 DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
++.....+.+...+-+--...-..|.-+-.+.|++.+|.+.|+.+......|....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnir 204 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIR 204 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHH
Confidence 77666666555443222233345666666777777777777777765445555443
No 274
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=18 Score=39.71 Aligned_cols=109 Identities=15% Similarity=0.203 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (729)
.+.+..+.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-+++-+... .+.-|.-...+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344444445555666666665555442 3566666666666666666665544443322 234455566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYF 616 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 616 (729)
.+.|+.++|.+.+.+.... . -...+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 6777777776666443211 1 3445666666666666543
No 275
>PRK09687 putative lyase; Provisional
Probab=92.72 E-value=11 Score=37.20 Aligned_cols=128 Identities=16% Similarity=0.079 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 557 DHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG-RLELAFMYFSEMQVKGIRPNVITYNALI 635 (729)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 635 (729)
+..+-...+.++.+.++ ++|...+-.+.+. +|..+-...+.++...+ +...+...+..+.. .+|...-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44444455555555554 3455555555542 33344444444444432 23455555555553 24555555666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.- +|+..+.++. +-.||...
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~--~~~~d~~v 269 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL--YKFDDNEI 269 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH--hhCCChhH
Confidence 66666665 45555555555432 1 123455666666663 5666666666 33344443
No 276
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.32 E-value=21 Score=39.40 Aligned_cols=273 Identities=15% Similarity=0.033 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHH----H-HHHcCCHHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHh
Q 004814 363 RVSDARHRFFEMLRKNVIPDIISYNTLLY----G-YCRSGNIGEAFLLFDELRS-------RNLVPTVVTYNTLIDGLCR 430 (729)
Q Consensus 363 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~----~-~~~~g~~~~A~~l~~~m~~-------~~~~~~~~~~~~ll~~~~~ 430 (729)
+..+|.+.++.....|- ...-..++. + +....+.+.|+..|+.+.+ .+ +......+..+|.+
T Consensus 227 ~~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~ 300 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ 300 (552)
T ss_pred hhhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence 45788898988888763 333333322 2 4456799999999999877 55 44466677777777
Q ss_pred cC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---
Q 004814 431 YG-----DLEVAQQLKENMINQGILPDVITYTIMVNGSCKM---GNLSMAREFFNEMLRKGLQPDRFAYTTQIAGEL--- 499 (729)
Q Consensus 431 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~--- 499 (729)
.. +.+.|..++.+.-+.| .|+.... +...+... .+...|.++|....+.|.. ..+..+..+|.
T Consensus 301 g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 301 GLGVEKIDYEKALKLYTKAAELG-NPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGL 374 (552)
T ss_pred CCCCccccHHHHHHHHHHHHhcC-CchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCC
Confidence 43 6788999999999887 3444433 33333332 4678999999999998743 23333333332
Q ss_pred -hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH---Hh----
Q 004814 500 -KLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII-HAS---LE---- 570 (729)
Q Consensus 500 -~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~---~~---- 570 (729)
-..+...|...+....+.| .+....-...+..+.. ++++.+...+..+.+.|.. ...+-...+ ... ..
T Consensus 375 gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~ 451 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGV 451 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccc
Confidence 4568899999999999988 3332222233344444 7888888888877777644 222222222 111 11
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcC
Q 004814 571 MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR----GRLELAFMYFSEMQVKGIRPNVITYNALINGLC----RLR 642 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~----~~g 642 (729)
..+...+...+......| +......+.+.|... .+++.|...+....+.+ ....-.+...+- -..
T Consensus 452 ~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~ 524 (552)
T KOG1550|consen 452 ISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV 524 (552)
T ss_pred ccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch
Confidence 225667777777777665 666677777776554 35888888888888764 333333333221 223
Q ss_pred CHHHHHHHHHHHHHcC
Q 004814 643 RIDQAYGLFIDMEEEG 658 (729)
Q Consensus 643 ~~~~A~~~~~~m~~~g 658 (729)
+..|.++++...+.+
T Consensus 525 -~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 525 -LHLAKRYYDQASEED 539 (552)
T ss_pred -hHHHHHHHHHHHhcC
Confidence 677888888777643
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.13 E-value=0.28 Score=30.21 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+|..++.++...|++++|+..|++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45666666666777777777766666
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.02 E-value=0.19 Score=31.04 Aligned_cols=32 Identities=13% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHH
Q 004814 147 VETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCL 193 (729)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 193 (729)
++++++.+|+ +...|..|+..|...|++++|+
T Consensus 2 y~kAie~~P~---------------n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN---------------NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC---------------CHHHHHHHHHHHHHCcCHHhhc
Confidence 5677777777 6888999999999999999886
No 279
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.98 E-value=1.3 Score=42.04 Aligned_cols=31 Identities=23% Similarity=0.213 Sum_probs=15.2
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC
Q 004814 367 ARHRFFEMLRKNVIPDIISYNTLLYGYCRSG 397 (729)
Q Consensus 367 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 397 (729)
+++++++|...|+.||..+-..|++++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4444555555555555555555555544444
No 280
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.88 E-value=6.3 Score=33.87 Aligned_cols=82 Identities=10% Similarity=-0.037 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC--ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP--DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTML 250 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 250 (729)
+..+..-+..-.+.|++++|.+.|+.+...-+.. ...+-..++.++.+.+++++|...+++.++.....--.-|...+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3344444555567788888888888887653321 23344567777888888888888888887764222223454445
Q ss_pred HHHH
Q 004814 251 DSFC 254 (729)
Q Consensus 251 ~~~~ 254 (729)
.+++
T Consensus 90 ~gL~ 93 (142)
T PF13512_consen 90 RGLS 93 (142)
T ss_pred HHHH
Confidence 5544
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.67 E-value=2.4 Score=37.18 Aligned_cols=117 Identities=21% Similarity=0.074 Sum_probs=69.0
Q ss_pred hhHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 004814 594 VTYTVLIHAH---AARGRLELAFMYFSEMQVKGIRPNVITY-NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTIL 669 (729)
Q Consensus 594 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 669 (729)
.+.+.|+... .+.++.+++..++..+.-. .|..... ..-+..+...|++++|+.+|+++.+.+ |....-..|
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kAL 83 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHH
Confidence 3455555543 4678999999999999874 5554332 333456788999999999999987753 444444445
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhcHH
Q 004814 670 INENCN-AGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVHAV 718 (729)
Q Consensus 670 ~~~~~~-~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~a~ 718 (729)
+..|.. .|+. +=..+-+++++.+-.|+.. .++-..+.+.+...|.
T Consensus 84 lA~CL~~~~D~-~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 84 LALCLYALGDP-SWRRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHcCCh-HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 444444 4443 2344455566444444433 2323444455444443
No 282
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.67 E-value=1.9 Score=41.92 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
++..++..+...|+++.+...++++....+. |...|..++.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4445555555555555555555555555443 55555555555555555555555555544
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.63 E-value=27 Score=39.19 Aligned_cols=184 Identities=13% Similarity=0.140 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHH-CCCCCC--hHhHHHHHHHHH-HCCChhHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhcCCHH
Q 004814 190 EQCLLVFNKMLR-NGLLPD--VKNCNRIIKVLR-DNGFSVKAREVYRMMGEFGIKPSIV-----TYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 190 ~~A~~~~~~~~~-~~~~~~--~~~~~~ll~~l~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~ 260 (729)
..|+..++.+.+ ..+.|. ..++..++..|. ...++++|...+.+.....-.++.. ....++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 355566666663 333332 333445566554 5667777777777654432122211 1234455555555444
Q ss_pred HHHHHHHHHHhCC----CCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhCC---CccChhhHHHHHHHHH--hCCCHH
Q 004814 261 EALELLWEMQGRG----CSPNGVTYNVL-ITGFSRNGELEQARGLIRDMLKLG---LKVSAHSYNPIICGYS--EKGLLV 330 (729)
Q Consensus 261 ~A~~~~~~m~~~~----~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~li~~~~--~~g~~~ 330 (729)
|...+++..+.- ..+-...+..+ +..+...++...|.+.++.+.... ..|...++..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 766666655431 11112222222 222223367777777776665432 2233334444444332 345556
Q ss_pred HHHHHHHHHHHCC--C-------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 004814 331 EALNLEEEMVTRG--V-------APTLATYNILIYGLC--KWGRVSDARHRFFEM 374 (729)
Q Consensus 331 ~A~~~~~~m~~~g--~-------~p~~~~~~~li~~~~--~~g~~~~A~~~~~~~ 374 (729)
++.+..+++.... + .|-..+|..+++.++ ..|+++.+.+.+.++
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666665553311 1 223444555544433 445555555554443
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.61 E-value=0.77 Score=44.72 Aligned_cols=53 Identities=9% Similarity=-0.053 Sum_probs=23.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
-|.++|.+++|..+|...+... +.|.+++..-..+|.+..++..|..=...++
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444445544444443331 2244444444444444444444444444433
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.60 E-value=0.25 Score=30.55 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=18.9
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 651 FIDMEEEGILPNKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 651 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
|++.++.. |-|...|..+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445543 445556666666666677666664
No 286
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.37 E-value=2.8 Score=38.10 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
...+..++..|.+.|+.++|++.|.++.+....+. ...+..++.+....+++..+.....+...
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45677888899999999999999999888654443 23456677777788888887777766644
No 287
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.29 E-value=35 Score=39.85 Aligned_cols=186 Identities=15% Similarity=0.065 Sum_probs=90.5
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 394 CRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAR 473 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (729)
..+.+..+=+-+++++++. +++..-| .|+. ..++++.|+..+.++- ...|.-.++.--+.|-+++|+
T Consensus 862 ~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~--~L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKM--ETLLRKF--KIDD--YLKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HhccChHHHHHHHHHHhhc--hhhhhhe--eHHH--HHHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhh
Confidence 3445555666666655532 1111111 1121 2345566655554442 122333344444566666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 474 EFFNEMLRKGLQPDRFAYTTQ----IAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKM 549 (729)
Q Consensus 474 ~~~~~~~~~g~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 549 (729)
.++ .|+...+... ..-+...+.+++|.-.|+..-+. .-.+.+|-.+|++.+|+.+..++
T Consensus 929 ~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 929 ALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred hee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhh
Confidence 665 2344333333 33334455555555555443221 12345566667777777666655
Q ss_pred HhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 550 VGDGFIPDHI--TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 550 ~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
... .|.. +-..|..-+...+++-+|-++..+.... | .-.+..|++...+++|+++-....
T Consensus 992 ~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 992 SEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred cCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 432 1221 2245555666677777777776665542 1 122344555566666666554443
No 288
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.24 E-value=29 Score=38.90 Aligned_cols=169 Identities=10% Similarity=0.058 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHCCCCCChH----hHH-HHHHHHHHCCChhHHHHHHHHHHhC----CCCC
Q 004814 172 SIKILDLLLLIYT-KKSMVEQCLLVFNKMLRNGLLPDVK----NCN-RIIKVLRDNGFSVKAREVYRMMGEF----GIKP 241 (729)
Q Consensus 172 ~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~----~~~-~ll~~l~~~g~~~~A~~~~~~~~~~----~~~~ 241 (729)
...+...++..|. ...++++|...+++.....-.++.. .+. .++..+.+.+... |....++.++. +..+
T Consensus 58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~ 136 (608)
T PF10345_consen 58 EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSA 136 (608)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchh
Confidence 4566777888877 6678999999999886533222221 122 3456666666555 99998887653 1122
Q ss_pred ChhhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHHhCCC------
Q 004814 242 SIVTYNTM-LDSFCKEGEMQEALELLWEMQGRG---CSPNGVTYNVLITGFS--RNGELEQARGLIRDMLKLGL------ 309 (729)
Q Consensus 242 ~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~------ 309 (729)
-...|..+ +..+...+++..|.+.++.+.... ..|-...+-.++.+.. +.+..+++.+.++.+.....
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCC
Confidence 33344444 333334479999999998886542 2344445555554443 45667778777777743211
Q ss_pred ---ccChhhHHHHHHHH--HhCCCHHHHHHHHHHHHH
Q 004814 310 ---KVSAHSYNPIICGY--SEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 310 ---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~ 341 (729)
.|...+|..++..+ ...|+++.+.+.++++.+
T Consensus 217 ~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 217 SVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23445666666654 467887777776666554
No 289
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.14 E-value=17 Score=36.11 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH
Q 004814 331 EALNLEEEMVTRGVAPTLATYNI 353 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~~~~~ 353 (729)
+.+.+++.|.+.|+.-+..+|-+
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~la 102 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLA 102 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHH
Confidence 34455566666666555544443
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.10 E-value=10 Score=33.36 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=52.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN-RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
++..-.+.++.+++..+++.+.-.. |...... .-...+..+|++.+|+.+|+++.+.+ |....-..|+..|....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHc
Confidence 3344457778888888888888754 3333322 23445678888999999998887653 33333333443333332
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 004814 258 EMQEALELLWEMQGRGCSPN 277 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~~~~p~ 277 (729)
+-..=...-+++.+.+..|+
T Consensus 92 ~D~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGADPD 111 (160)
T ss_pred CChHHHHHHHHHHhcCCChH
Confidence 22222233344555443333
No 291
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.05 E-value=12 Score=34.00 Aligned_cols=89 Identities=16% Similarity=0.104 Sum_probs=62.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITY-----NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENC 674 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 674 (729)
...+...|++++|...++..... |....+ -.|.......|.+|+|...++...+.++. ......-.+++.
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill 170 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILL 170 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHH
Confidence 44567788899998888887754 222222 34556677888999999888877654321 223345567888
Q ss_pred hcCCHHHHHHHHHHHHHCC
Q 004814 675 NAGNWQEALRLYKEMLDRE 693 (729)
Q Consensus 675 ~~g~~~~A~~~~~~m~~~~ 693 (729)
..|+-++|+.-|++.++.+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 171 AKGDKQEARAAYEKALESD 189 (207)
T ss_pred HcCchHHHHHHHHHHHHcc
Confidence 8999999999999998665
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.83 E-value=0.41 Score=29.31 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.|..+..++.+.|++++|++.+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666666666666666666666
No 293
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.83 E-value=2.7 Score=40.86 Aligned_cols=55 Identities=15% Similarity=0.201 Sum_probs=23.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3333444444444444444444432 334444444444444444444444444443
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.80 E-value=0.58 Score=28.72 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccch
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMH 156 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 156 (729)
.+|..++.++...|++++|...++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999998875
No 295
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.75 E-value=11 Score=33.30 Aligned_cols=53 Identities=13% Similarity=0.205 Sum_probs=23.6
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVK-NCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
.+.+..++|+..|..+.+.|...-+. ..........+.|+...|...|+++-.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence 44555555555555555544321111 111223334445555555555555543
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.74 E-value=33 Score=38.70 Aligned_cols=318 Identities=14% Similarity=0.024 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC
Q 004814 334 NLEEEMVTRGVAPT-LATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR 412 (729)
Q Consensus 334 ~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 412 (729)
+.+..-.+.++.++ ......-...+...|...+| |.-.+..|+++.|-.++++....
T Consensus 332 eFL~~r~~~~~~~~~~~lH~~Aa~w~~~~g~~~eA----------------------I~hAlaA~d~~~aa~lle~~~~~ 389 (894)
T COG2909 332 EFLRQRLQRELAARLKELHRAAAEWFAEHGLPSEA----------------------IDHALAAGDPEMAADLLEQLEWQ 389 (894)
T ss_pred HHHHhhhccccCCchhHHHHHHHHHHHhCCChHHH----------------------HHHHHhCCCHHHHHHHHHhhhhh
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 004814 413 NLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYT 492 (729)
Q Consensus 413 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~ 492 (729)
+...+++.....+.+.+-..-...++...-.-+-......++++|..++.++...-..|+...-.
T Consensus 390 ---------------L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~ 454 (894)
T COG2909 390 ---------------LFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQG 454 (894)
T ss_pred ---------------hhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchh
Q ss_pred HHHHHHH--------hcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 493 TQIAGEL--------KLGDTSEAYRLQEEMLAK----GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHIT 560 (729)
Q Consensus 493 ~li~~~~--------~~g~~~~A~~l~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 560 (729)
.+...+. ..|++++|.++.+..... -..+....+..+..+..-.|++++|..+..+..+..-.-+...
T Consensus 455 ~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~ 534 (894)
T COG2909 455 DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYH 534 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHH
Q ss_pred HHHHHHH-----HHhcC--CHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCC
Q 004814 561 YTSIIHA-----SLEMG--DLRRGRDLFNNMLRKGLSPTLV------TYTVLIHAHAA-RGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 561 ~~~l~~~-----~~~~g--~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~-~g~~~~A~~~~~~~~~~g~~p 626 (729)
+...... +...| ...+....+........+.... ++..+..++.+ .+...++..-+.--......|
T Consensus 535 l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~ 614 (894)
T COG2909 535 LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQP 614 (894)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccch
Q ss_pred CHHHHH--HHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 004814 627 NVITYN--ALINGLCRLRRIDQAYGLFIDMEE----EGILPNKYTYTILINENCN--AGNWQEALRLYKE 688 (729)
Q Consensus 627 ~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~ 688 (729)
-...+. .|+......|+.++|...+.++.. .+..++..+-...+..... +|+.++|.....+
T Consensus 615 ~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 615 LLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.64 E-value=19 Score=35.79 Aligned_cols=130 Identities=14% Similarity=0.206 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHHHcCC--
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLE--MG----DLRRGRDLFNNMLRKGL---SPTLVTYTVLIHAHAARGR-- 608 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-- 608 (729)
++...+++.+.+.|+..+..+|-+....... .. ...+|.++++.|.+... .++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666665555444332222211 11 24466677777766521 1233344444332 2222
Q ss_pred --HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 609 --LELAFMYFSEMQVKGIRPNVI--TYNALINGLCRLRR--IDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 609 --~~~A~~~~~~~~~~g~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
.+.+..+|+.+.+.|+..... ....++..+..... ...+.++++.+.+.|+++....|..++-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 345566666666666554332 22222222211111 3456677777777777766666655543
No 298
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.35 E-value=34 Score=38.22 Aligned_cols=28 Identities=4% Similarity=0.179 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 004814 454 ITYTIMVNGSCK---MGNLSMAREFFNEMLR 481 (729)
Q Consensus 454 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 481 (729)
.-+..|+..|.+ ..+..+|.+++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345556666654 3456666666655544
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.16 E-value=3.8 Score=37.22 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG--VTYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
.+..+...|++.|+.++|++.|.++.+....+.. ..+..+|+...-.|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4556666777777777777777776665333322 234555666666666666666665554
No 300
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.04 E-value=0.71 Score=28.90 Aligned_cols=27 Identities=11% Similarity=0.002 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
+|..|+..|.+.|++++|++++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 367788888888888888888888543
No 301
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=89.97 E-value=28 Score=36.54 Aligned_cols=92 Identities=11% Similarity=0.179 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH--HcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA--ARGRLELAFMYFSEMQVK-GIRPNVITYNALINGL 638 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~ 638 (729)
+.++..+.+.|-.++|..++..+...- +|+...|..++..-. ..-+..-+.++++.|... | .|+..|-..+..-
T Consensus 464 s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e 540 (568)
T KOG2396|consen 464 SKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEE 540 (568)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhh
Confidence 344555556666666666666665542 445555555554321 111256666666666554 3 4555565555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 004814 639 CRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~ 656 (729)
...|+.+.+-.++.++.+
T Consensus 541 ~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 541 LPLGRPENCGQIYWRAMK 558 (568)
T ss_pred ccCCCcccccHHHHHHHH
Confidence 566666666666555544
No 302
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.73 E-value=14 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=8.4
Q ss_pred CCCCCChhhHHHHHHHHHhcCC
Q 004814 237 FGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~ 258 (729)
.+++|+...+..+++.+.+.|+
T Consensus 23 ~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 23 HNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred cCCCCCHHHHHHHHHHHHHcCC
Confidence 3333333333333333333333
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.53 E-value=0.84 Score=27.86 Aligned_cols=32 Identities=9% Similarity=0.019 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccch
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMH 156 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 156 (729)
..|..++.++...|++++|...++++++.+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 56788999999999999999999999988774
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.27 E-value=15 Score=32.65 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=16.9
Q ss_pred HHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhH
Q 004814 193 LLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVK 226 (729)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~ 226 (729)
++.++.+.+.+..|+...+..++..+.+.|++..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3444444445555555555555555555554433
No 305
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.00 E-value=30 Score=35.56 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=34.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
..+.-+.|+++...+........ .++...+..+... ..++++++...++.+...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~ 58 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQL 58 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHHH
Confidence 45677888888855555544332 2355555555533 788888888888777653
No 306
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.38 E-value=19 Score=32.66 Aligned_cols=114 Identities=11% Similarity=0.061 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHHcCCHHHHHH
Q 004814 541 EANELLRKMVGDGFIPDHITYTS--IIHASLEMGDLRRGRDLFNNMLRKGLSPTL----VTYTVLIHAHAARGRLELAFM 614 (729)
Q Consensus 541 ~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~ 614 (729)
+.....+++...........+.+ +...+...+++++|...++..+.. +.|. .+--.|.......|.+|+|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444555554422212222222 345577788888888888877754 2221 122334556778888899888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 615 YFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 615 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
.++...+.+. .......-++.+...|+-++|+.-|++..+.+
T Consensus 148 ~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 148 TLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 8887776532 33344556778888899999999998888864
No 307
>PRK09687 putative lyase; Provisional
Probab=88.26 E-value=28 Score=34.38 Aligned_cols=201 Identities=13% Similarity=0.048 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-----HHHHHHHHHHHHCCCCCC
Q 004814 452 DVITYTIMVNGSCKMGNL----SMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT-----SEAYRLQEEMLAKGFPPD 522 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-----~~A~~l~~~~~~~~~~~~ 522 (729)
|...-...+.++.+.|+. +++...+..+... .++.......+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444444555555555542 3455555555333 34444444444444433211 223333333322 235
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMG-DLRRGRDLFNNMLRKGLSPTLVTYTVLIH 601 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 601 (729)
..+-...+.++.+.++ .++...+-.+++. +|..+-...+.++.+.+ +...+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555666777777765 4566666666653 34444444455555442 24456666666664 356667777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004814 602 AHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673 (729)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 673 (729)
++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|+..+.++.+. .||..+-...+.++
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 7777777 45666666665542 2 234566777777774 678888777764 34666555555544
No 308
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.09 E-value=2.9 Score=40.97 Aligned_cols=96 Identities=11% Similarity=-0.036 Sum_probs=62.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 178 LLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 178 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
.-.+-|.++|.+++|+..|.+.....+. +.+.+..-..+|.+..++..|..-....+..+ ..-+-+|..-+.+-...|
T Consensus 102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 102 ERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred HhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 3456788999999999999988876543 77777778888888888888877777766543 111223443333333445
Q ss_pred CHHHHHHHHHHHHhCCCCCC
Q 004814 258 EMQEALELLWEMQGRGCSPN 277 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~~~~p~ 277 (729)
+..+|.+-++...+. .|+
T Consensus 180 ~~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL--EPK 197 (536)
T ss_pred hHHHHHHhHHHHHhh--Ccc
Confidence 555555555555543 444
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.01 E-value=4.8 Score=42.71 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 348 LATYNILIYGLCKWGRVSDARHRFFE 373 (729)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (729)
..-|..|.+.....|++..|.+.|..
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHh
Confidence 33444444444444444444444433
No 310
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.90 E-value=5.9 Score=34.16 Aligned_cols=63 Identities=16% Similarity=-0.018 Sum_probs=42.4
Q ss_pred hhHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 594 VTYTVLIHAH---AARGRLELAFMYFSEMQVKGIRPNVI-TYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 594 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
.+.+.|++.. ...++.+++..+++.|.-. .|+.. .-..-+..+...|++++|.++|++..+.+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3445555443 3578889999999888774 44432 22233456788899999999999888754
No 311
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=87.38 E-value=24 Score=32.60 Aligned_cols=81 Identities=15% Similarity=-0.005 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 190 EQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
+-|.--|.+.+...+. -+.++|-+.--+...|+++.|.+.|+...+.+..-+-...|.-|. +---|+++-|.+-|...
T Consensus 82 ~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 82 ALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHHHHH
Confidence 3344444444443322 345577777777888888888888888887652222222232222 23457888887766555
Q ss_pred HhC
Q 004814 270 QGR 272 (729)
Q Consensus 270 ~~~ 272 (729)
-..
T Consensus 160 YQ~ 162 (297)
T COG4785 160 YQD 162 (297)
T ss_pred Hhc
Confidence 443
No 312
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=5.8 Score=38.57 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 558 HITYTSIIHASLEMGDLRRGRDLFNNMLRKG---LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNAL 634 (729)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 634 (729)
..+...++..-....+++.+...+-++...- ..++...+ ..+. ++-.-++++++.++..=+..|+-||..+++.+
T Consensus 64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3344444444444556666666665554320 11111111 1111 12223455666666666666666777777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 004814 635 INGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 635 ~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
++.+.+.+++.+|.++...|+..
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 77777777776666666666553
No 313
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.12 E-value=63 Score=36.18 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=36.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHh---
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL-QPDRFAYTTQIAGELK--- 500 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~li~~~~~--- 500 (729)
...+.-.|+++.|.+.+-+ ..+...+.+.+...+..| |-.......-..+..... .|....+..+|..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3455668889998888776 112233444444443332 222211111122222110 1122556777777764
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004814 501 LGDTSEAYRLQEEMLAK 517 (729)
Q Consensus 501 ~g~~~~A~~l~~~~~~~ 517 (729)
..+..+|.+.+--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 45677777776655443
No 314
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.81 E-value=7.1 Score=34.89 Aligned_cols=77 Identities=19% Similarity=0.195 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCC-----------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 187 SMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGF-----------SVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
.++++|+.-|++++...|. ...++..+.++|...+. +++|...|++.... .|+...|+.-+....
T Consensus 49 ~miedAisK~eeAL~I~P~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~- 124 (186)
T PF06552_consen 49 KMIEDAISKFEEALKINPN-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA- 124 (186)
T ss_dssp HHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-
Confidence 3567888888888886644 34566667776655432 33444444444443 466666665555442
Q ss_pred cCCHHHHHHHHHHHHhC
Q 004814 256 EGEMQEALELLWEMQGR 272 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~ 272 (729)
+|-++..++.+.
T Consensus 125 -----kap~lh~e~~~~ 136 (186)
T PF06552_consen 125 -----KAPELHMEIHKQ 136 (186)
T ss_dssp -----THHHHHHHHHHS
T ss_pred -----hhHHHHHHHHHH
Confidence 245555555444
No 315
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.52 E-value=35 Score=32.62 Aligned_cols=158 Identities=12% Similarity=0.111 Sum_probs=97.5
Q ss_pred cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCC--CChHhH
Q 004814 137 SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR---NGLL--PDVKNC 211 (729)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~ 211 (729)
...+++|+..|+++++..++. ..+--+.+..++..+.+.|++++..+.|.+++. ..+. -+..+-
T Consensus 40 e~~p~~Al~sF~kVlelEgEK-----------geWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsI 108 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEK-----------GEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSI 108 (440)
T ss_pred ccCHHHHHHHHHHHHhccccc-----------chhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 346788999999888876542 123456677888999999999999999888763 1111 234556
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----C------
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEF-----GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS----P------ 276 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p------ 276 (729)
|+++.......+.+.-..+|+.-.+. +-..-..|-..|...|...|.+.+-.+++.++...-.. .
T Consensus 109 N~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGt 188 (440)
T KOG1464|consen 109 NSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGT 188 (440)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccc
Confidence 77777666666666665665543221 00111223356777777777777777777776543111 0
Q ss_pred -CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 277 -NGVTYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 277 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
=...|..=|..|...++-.....++++.+
T Consensus 189 QLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 189 QLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 12345555666666666666666666655
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.19 E-value=4.6 Score=36.08 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 645 DQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
++|...|+++.+ ..|+...|+.-+.
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLE 121 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHH
Confidence 334444444444 2455555554443
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.14 E-value=1.1 Score=27.37 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+|..+...|...|++++|.+.|++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555556666666666666666655
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.01 E-value=47 Score=33.68 Aligned_cols=60 Identities=13% Similarity=-0.041 Sum_probs=36.7
Q ss_pred HHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 004814 143 AYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVL 218 (729)
Q Consensus 143 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l 218 (729)
-+.+++++++.+|. +..++..++..+.+....++..+.+++++...+. +...|...+...
T Consensus 50 klsilerAL~~np~---------------~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~ 109 (321)
T PF08424_consen 50 KLSILERALKHNPD---------------SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHH
Confidence 34566666666554 4566666666666666777777777777765433 455555555544
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.78 E-value=12 Score=39.85 Aligned_cols=131 Identities=17% Similarity=0.078 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 004814 315 SYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYC 394 (729)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 394 (729)
..+.++..+.+.|..++|+++-. |... -.....+.|+++.|.++..+. .+..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s~---------D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELST---------DPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcCC---------Chhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHh
Confidence 44556666666666666665421 1111 123344567777776655443 34556777777777
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMARE 474 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (729)
+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.| ..|. ..-+|...|+++++.+
T Consensus 678 ~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNNL-----AFLAYFLSGDYEECLE 742 (794)
T ss_pred hcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccch-----HHHHHHHcCCHHHHHH
Confidence 77777777776665433 2344555555666555555544444444 2222 1223445666666666
Q ss_pred HHHH
Q 004814 475 FFNE 478 (729)
Q Consensus 475 ~~~~ 478 (729)
++..
T Consensus 743 lLi~ 746 (794)
T KOG0276|consen 743 LLIS 746 (794)
T ss_pred HHHh
Confidence 6543
No 320
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.42 E-value=15 Score=33.69 Aligned_cols=73 Identities=15% Similarity=0.011 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 610 ELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE---GILPNKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 610 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
++|.+.|-++...+.--++.....|+..|. ..+.++|+.++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 667777777776655556666666665555 45777888887777763 22566777888888888888887775
No 321
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.29 E-value=15 Score=33.33 Aligned_cols=95 Identities=13% Similarity=-0.062 Sum_probs=47.5
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhH
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNC 211 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 211 (729)
.-+.++|.+.+|..-|..++..-|... .....-+|..-+.++.+.+.++.|+.-..+.++.++. ...+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~----------~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTS----------TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCcccc----------HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHH
Confidence 345666777777766666665433210 0011222333344555666666666666666665533 22333
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
..-..+|-+...+++|+.=|..+.+.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 33344455555555555555555543
No 322
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.09 E-value=46 Score=38.21 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 355677777777777777777777765
No 323
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.78 E-value=28 Score=30.20 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=35.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHH-HHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCN-RIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
...++.+++..+++.+.-..+ +..... .-...+...|++++|+.+|+++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP--~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRP--NLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCC--CccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 347788888888888876543 322222 23345677888888888888887753
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.58 E-value=12 Score=38.75 Aligned_cols=128 Identities=18% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI 644 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 644 (729)
|.--...|++..|-+-+...+... +.++.........+...|+++.+...+...... +.....+..+++....+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 645 DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
++|..+-.-|....+. ++.............|-++++...|++.. -+.|.
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~--~~~~~ 423 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL--LLNPE 423 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh--ccCCh
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.33 E-value=3 Score=26.77 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 664 YTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+++.|...|...|++++|..++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 467788888888888888888888877
No 326
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.09 E-value=66 Score=33.92 Aligned_cols=79 Identities=9% Similarity=-0.015 Sum_probs=52.6
Q ss_pred HHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 004814 192 CLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC-KEGEMQEALELLWEMQ 270 (729)
Q Consensus 192 A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 270 (729)
...+|+++... +.-|+..|...+..+.+.+.+.+...+|.+|.... +.++..|..-..... ..-+++.|..+|.+-.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 34455555543 23388888888888888888999999999988754 344444443333333 3334888888888877
Q ss_pred hC
Q 004814 271 GR 272 (729)
Q Consensus 271 ~~ 272 (729)
..
T Consensus 168 R~ 169 (568)
T KOG2396|consen 168 RF 169 (568)
T ss_pred hc
Confidence 65
No 327
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=83.03 E-value=63 Score=35.88 Aligned_cols=147 Identities=14% Similarity=0.133 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 543 NELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 543 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
...++.++..-+..+.....-++..|.+.|-.+.|.++.+.+-.+-. ...-|..-+.-+.++|+......+-+.+
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l--- 464 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL--- 464 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH---
Confidence 44445555443344555556666677777777777766665543310 1122333333344444444333333333
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 623 GIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE-GILPNKYTYTILIN--ENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 623 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+..|+..|... ...+.+.+... .+.+....|..+-+ ...+.|++.+|.+.+-.++..+..|...
T Consensus 465 ------------l~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f 531 (566)
T PF07575_consen 465 ------------LEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKSF 531 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------HHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHHH
Confidence 23334333311 12222221111 01111111111111 1244688889988888888777777653
Q ss_pred HHHHHHHhh
Q 004814 700 THSALLLKQ 708 (729)
Q Consensus 700 ~~~~ll~~~ 708 (729)
|..+|.+.
T Consensus 532 -~~~LL~d~ 539 (566)
T PF07575_consen 532 -WPLLLCDA 539 (566)
T ss_dssp ---------
T ss_pred -HHHHHHHH
Confidence 44443443
No 328
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.33 E-value=63 Score=33.12 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=35.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 389 LLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN 446 (729)
Q Consensus 389 li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 446 (729)
...+.-+.|+++...+........ .++...+..+... ..++.+++....+.+..
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 356677889998855555544432 2345555554433 78999999888887765
No 329
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.22 E-value=12 Score=34.18 Aligned_cols=71 Identities=13% Similarity=-0.048 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK---GIRPNVITYNALINGLCRLRRIDQA 647 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~~~A 647 (729)
+|.+.|-.+...+.-.++.....|...|. ..+.++++.++.++.+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444332233333333333222 34445555555444432 2234455555555555555555554
No 330
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=81.85 E-value=21 Score=30.08 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=6.1
Q ss_pred CChHHHHHHHHHh
Q 004814 102 EKPRIALRFFRWV 114 (729)
Q Consensus 102 ~~~~~al~~f~~~ 114 (729)
++|..|..++.+.
T Consensus 3 nNp~IA~~~l~~l 15 (126)
T PF10155_consen 3 NNPNIAIEILVKL 15 (126)
T ss_pred CcHHHHHHHHHHH
Confidence 3444555544444
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.57 E-value=1.7e+02 Score=37.55 Aligned_cols=321 Identities=12% Similarity=0.032 Sum_probs=163.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHH
Q 004814 248 TMLDSFCKEGEMQEALELLWEM----QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGY 323 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 323 (729)
.+..+-.+++.+.+|...++.- .+. .-...-|..+...|...+++|....+...-.. .| ....-|...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHH
Confidence 4555666788999999988883 222 11233455556689999999888877764211 11 233456667
Q ss_pred HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH-HHHHHHcCCHHHH
Q 004814 324 SEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTL-LYGYCRSGNIGEA 402 (729)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A 402 (729)
...|++..|...|+.+.+.+.+ ...+++-++......|.++...-..+....+.. +....++.+ +.+--+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~s-e~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRS-EEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccC-HHHHHHHHHHHHHHhhhcchhhh
Confidence 7889999999999999886533 466777777777777888777765555444321 333444443 3333556666665
Q ss_pred HHHHHHHhhCCCCCCHhhHHHH--HHHHHhcC--CHHHHHHHHHHHHHC--------CCC-CCHHHHHHHHHHHHhcCCH
Q 004814 403 FLLFDELRSRNLVPTVVTYNTL--IDGLCRYG--DLEVAQQLKENMINQ--------GIL-PDVITYTIMVNGSCKMGNL 469 (729)
Q Consensus 403 ~~l~~~m~~~~~~~~~~~~~~l--l~~~~~~g--~~~~A~~~~~~~~~~--------~~~-~~~~~~~~l~~~~~~~g~~ 469 (729)
...+. .. +..+|... .....+.. +.-.-.+..+.+.+. +.. .-...|..++..+.-..--
T Consensus 1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 55443 11 22233322 22222221 111111222222211 111 1123344444333221111
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 004814 470 SMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEE-MLAK----GFP-PDLITYNVLVHGLCKLGSLEEAN 543 (729)
Q Consensus 470 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~ 543 (729)
.....+...-.......+...|..-+..-....+..+-+-.+++ +... +.. .-..+|-...+...+.|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111110000000011111122222111111112221111111 1111 111 12457777888878899999998
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 544 ELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG 588 (729)
Q Consensus 544 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 588 (729)
..+-.+.+.+ -+..+--........|+...|+.++++..+..
T Consensus 1691 nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1691 NALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 8777776654 23445556677788899999999999888653
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.30 E-value=3.9 Score=26.21 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888887765
No 333
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.26 E-value=98 Score=34.62 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=12.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 459 MVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
|+..|...+++..|..++-.+.
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 5555666666666666554443
No 334
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.19 E-value=95 Score=34.47 Aligned_cols=158 Identities=14% Similarity=0.057 Sum_probs=76.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHH-HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHH-hCCCCCC-hhhHHHHHHHHHh
Q 004814 179 LLLIYTKKSMVEQCLLVFNKML-RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMG-EFGIKPS-IVTYNTMLDSFCK 255 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~-~~~~~~~-~~~~~~li~~~~~ 255 (729)
+-.+|...|.+++|++..=+.. ...+.++...+.+++.-+... -.+++.+.+..-. ..++.+- ....+.++..|..
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~ 143 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD 143 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh
Confidence 3456777888999987765443 333445555555555444321 1223333333211 1111111 1134445555555
Q ss_pred cCCHHHHHH---------HHHHH-HhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHh---CCCccChhhHHHHHH
Q 004814 256 EGEMQEALE---------LLWEM-QGRGCSPNGVTYNVLITGFSRNGE-LEQARGLIRDMLK---LGLKVSAHSYNPIIC 321 (729)
Q Consensus 256 ~g~~~~A~~---------~~~~m-~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~---~~~~~~~~~~~~li~ 321 (729)
.+++..|+. ++++. .+....++ ..+.++..+..... .+--.++++.+.+ ....|| |..+..
T Consensus 144 d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~--~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~ 218 (929)
T KOG2062|consen 144 DNEYKQAIGIAFETRRLDIIEEAILKSDSVIG--NLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQ 218 (929)
T ss_pred hhHHHHHHhHHhhhhhHHHHHHHhccccccch--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeee
Confidence 555544433 33332 22212222 22223333322222 2333344444443 223444 556777
Q ss_pred HHHhCCCHHHHHHHHHHHHHC
Q 004814 322 GYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~ 342 (729)
+|.-..+.+.+.++++++.+.
T Consensus 219 c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 219 CYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeEEcCCHHHHHHHHHHHHhc
Confidence 888888999999999998874
No 335
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=80.44 E-value=77 Score=35.19 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKM 199 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 199 (729)
++..|+ .+..+.-.|++++|.+++...
T Consensus 148 ~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 148 DPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred chhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 377787 677788889999999888443
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=80.37 E-value=3.9 Score=24.84 Aligned_cols=31 Identities=16% Similarity=0.087 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccc
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNM 155 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 155 (729)
.+|..+..++...|++++|...|+++++.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4688899999999999999999999988765
No 337
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.21 E-value=61 Score=31.60 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=31.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 598 VLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
.....|..+|.+.+|.++.++.+... +.+...+-.++..+...|+--+|.+-++++.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445566666666666666665542 2244455556666666666555555555553
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.97 E-value=30 Score=33.91 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 363 RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 363 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
+.++++.++..-+.-|+-||..+.+.+|+.+.+.+++.+|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555444433
No 339
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.61 E-value=0.61 Score=40.77 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=26.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFS 617 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (729)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444455555555555555544333445555555555555554455554444
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=79.42 E-value=19 Score=28.41 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=21.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 612 AFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 612 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
+.+-++.+....+.|++....+.+.+|.+.+++.-|+++++-..
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33333444434444555555555555555555555555555444
No 341
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=78.82 E-value=50 Score=34.59 Aligned_cols=40 Identities=18% Similarity=0.290 Sum_probs=24.1
Q ss_pred hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 290 RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
..+.++...++++.+...|.....+.++.-...|.+.|..
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 3456666666666666666555555566666666655543
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.53 E-value=16 Score=29.14 Aligned_cols=47 Identities=9% Similarity=0.056 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 611 LAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 611 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+++++-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444444455555666666666666666666666666555543
No 343
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.83 E-value=1.2e+02 Score=33.85 Aligned_cols=24 Identities=33% Similarity=0.364 Sum_probs=10.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 247 NTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
...|..+.-.|++++|-...-.|.
T Consensus 396 ~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 396 KTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHHHHHHhcchHHHHHhhhHHHh
Confidence 334444444444444444444443
No 344
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.74 E-value=63 Score=30.41 Aligned_cols=23 Identities=9% Similarity=0.105 Sum_probs=16.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIR 625 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~ 625 (729)
-+..+++.+|+++|++.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34578888899998888765443
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.25 E-value=30 Score=27.65 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 576 RGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 576 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-...+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555555443
No 346
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.57 E-value=79 Score=30.88 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML-----DREIEPDYC 699 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~pd~~ 699 (729)
+++.....|..+|.+.+|.++.++....+ +.+...+..+++.+...|+--.|.+.|+++. +.|+.-|..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 34566778999999999999999999875 6678889999999999999888888888775 246665544
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.32 E-value=3 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.456 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004814 668 ILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.++.++.+.|++++|.+.|++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 34555556666666666666665
No 348
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=76.03 E-value=15 Score=33.97 Aligned_cols=77 Identities=14% Similarity=-0.020 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE--GILPNKYTYTILINE 672 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~ 672 (729)
|.+.-++.+.+.+...+|+...++-++.. +.|...-..++..||-.|++++|..-++-..+. ...+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44566778889999999999998887763 235556677889999999999999888777663 123345567777664
No 349
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=75.97 E-value=2.4e+02 Score=36.25 Aligned_cols=324 Identities=14% Similarity=-0.002 Sum_probs=165.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh
Q 004814 129 TILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV 208 (729)
Q Consensus 129 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 208 (729)
++..+=.+.|.+.+|.-.+++-.... .........+..+-..|+..+++|....+...-.. .|+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~e------------k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~sl 1452 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE------------KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPSL 1452 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcccc------------chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---CccH
Confidence 34444455666677766666631100 01112344566666689999999888887774221 1222
Q ss_pred HhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HH
Q 004814 209 KNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLI-TG 287 (729)
Q Consensus 209 ~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li-~~ 287 (729)
..-+-.....|++..|...|+.+.+.+ ++...+++.++......|.++......+-.... ..+....++++- .+
T Consensus 1453 ---~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~ea 1527 (2382)
T KOG0890|consen 1453 ---YQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEA 1527 (2382)
T ss_pred ---HHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHH
Confidence 234445667899999999999999876 555778888888888888888888766665554 333444455442 34
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCccChhhHHH--HHHHHHhCC--CHHHHHHHHHHHHHC--------CCC-CCHHHHHHH
Q 004814 288 FSRNGELEQARGLIRDMLKLGLKVSAHSYNP--IICGYSEKG--LLVEALNLEEEMVTR--------GVA-PTLATYNIL 354 (729)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g--~~~~A~~~~~~m~~~--------g~~-p~~~~~~~l 354 (729)
--+.++++.....+. +. +..+|.+ ++....+.. +.-.-.+..+.+++. +.. .-...|..+
T Consensus 1528 aW~l~qwD~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~ 1600 (2382)
T KOG0890|consen 1528 AWRLSQWDLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEIL 1600 (2382)
T ss_pred Hhhhcchhhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHH
Confidence 456777777666654 11 2222322 222222221 111111233333221 111 011233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH-HhhC----CCC-CCHhhHHHHHHHH
Q 004814 355 IYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDE-LRSR----NLV-PTVVTYNTLIDGL 428 (729)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~----~~~-~~~~~~~~ll~~~ 428 (729)
+..+.-..-......+...-......-+..-|-.-+..-....+..+-+--+++ +... +.. --..+|....+..
T Consensus 1601 ~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAria 1680 (2382)
T KOG0890|consen 1601 MKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIA 1680 (2382)
T ss_pred HHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHH
Confidence 333222111111100000000000111111222222221111112222211221 1111 111 1235677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
...|+++.|...+-...+.+ . +..+-..+..+-+.|+...|+.++++.++.
T Consensus 1681 R~aG~~q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1681 RLAGHLQRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HhcccHHHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 78899999888877776654 3 334555666677889999999999888865
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=75.96 E-value=27 Score=27.76 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 224 SVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRD 303 (729)
Q Consensus 224 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 303 (729)
.++|..+-+.+...+ .....+-.+-+..+...|+|++|..+.+.+ +.||...|.+|-. .+.|.-+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 345555555444432 111222223334556677777777766555 4677777766543 255666666666666
Q ss_pred HHhCC
Q 004814 304 MLKLG 308 (729)
Q Consensus 304 m~~~~ 308 (729)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 65554
No 351
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.75 E-value=1.1e+02 Score=32.34 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=79.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVH 531 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~ 531 (729)
|.....+++..+.....+.-...+..+|+.-| -+...+..++++|... ..+.-..+++++.+..+ .|.+.-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44455556666666666666666666666653 2455666666666665 44555666666665532 23333344444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHH
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPD-----HITYTSIIHASLEMGDLRRGRDLFNNMLRK-GLSPTLVTYTVLIHAHAA 605 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 605 (729)
-|-+ ++...+...|.++...-++.. ...|..+... -..+.+.-..+..++... |..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444 555666666666554322100 0123322221 123344444444444332 212223333333444555
Q ss_pred cCCHHHHHHHHHHHHHC
Q 004814 606 RGRLELAFMYFSEMQVK 622 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~ 622 (729)
..++++|++++..+.+.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 55555555555555554
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.83 E-value=4.7 Score=24.14 Aligned_cols=31 Identities=6% Similarity=-0.021 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccch
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMH 156 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~ 156 (729)
++-.++.++.+.|++++|...++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4556788888999999999999999887664
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=74.30 E-value=5 Score=22.82 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=12.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 004814 667 TILINENCNAGNWQEALRLYK 687 (729)
Q Consensus 667 ~~l~~~~~~~g~~~~A~~~~~ 687 (729)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445556666666666666554
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.13 E-value=26 Score=32.50 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=26.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
+..+.+.+.+.+|+...++-.+.. +.|...-..+++.||-.|++++|..-++-.-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 334444455555555554444432 3344444455555555555555555444443
No 355
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.73 E-value=6.4 Score=22.67 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.|..+...+...|++++|...+++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34555566666666666666666665
No 356
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.41 E-value=10 Score=28.60 Aligned_cols=47 Identities=17% Similarity=0.131 Sum_probs=31.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 004814 640 RLRRIDQAYGLFIDMEEEGILPNK--YTYTILINENCNAGNWQEALRLY 686 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~A~~~~ 686 (729)
...+.++|+..|++.+++-..+.. .++..++.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777888888887775322221 24566677888888888777654
No 357
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.03 E-value=9.3 Score=26.47 Aligned_cols=35 Identities=31% Similarity=0.475 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 668 ILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
.+.-++.+.|++++|.+..+.++ .+.|+......+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL--~~eP~N~Qa~~L 40 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALL--EIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH--HHTTS-HHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH--hhCCCcHHHHHH
Confidence 34456677777777777777777 566666554444
No 358
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.94 E-value=8.1 Score=25.50 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=13.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 669 LINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
|..+|...|+.+.|.+++++.+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 4455666666666666666655
No 359
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=72.77 E-value=58 Score=30.79 Aligned_cols=21 Identities=14% Similarity=0.157 Sum_probs=9.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 004814 249 MLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m 269 (729)
+..++.....+++|+..+.+.
T Consensus 84 lg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 84 LGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHhhccccHHHHHHHHH
Confidence 334444444444444444443
No 360
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=72.65 E-value=1.1e+02 Score=30.90 Aligned_cols=118 Identities=10% Similarity=0.065 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH---cCCHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA---RGRLELAFMYF 616 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 616 (729)
+.-+.+++++++.++ .+......++..+.+..+.++..+.|+++.... +.+...|...++.... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445566777666643 355566666677777777777777777777653 3356666666654433 22355555555
Q ss_pred HHHHHC------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 004814 617 SEMQVK------GI------RPN-----VITYNALINGLCRLRRIDQAYGLFIDMEEEGI 659 (729)
Q Consensus 617 ~~~~~~------g~------~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 659 (729)
.+.+.. |. .++ ...+..+...+..+|..+.|+.+++-+++.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 544332 11 000 11123333445667788888888887777543
No 361
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.59 E-value=4.7 Score=22.91 Aligned_cols=21 Identities=5% Similarity=-0.092 Sum_probs=13.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHH
Q 004814 177 DLLLLIYTKKSMVEQCLLVFN 197 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~ 197 (729)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345666666666666666554
No 362
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=72.49 E-value=46 Score=26.36 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
.-++.+-++.+....+.|++.+..+.+.+|.+.+++..|.++++-...
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555555566666666666666666666666666665553
No 363
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=71.84 E-value=52 Score=26.64 Aligned_cols=79 Identities=20% Similarity=0.193 Sum_probs=40.5
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004814 223 FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIR 302 (729)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (729)
..++|..+.+.+...+- -...+--+-+..+..+|+|++| +..-.. ...||...|.+|-. .+.|--+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~-~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQC-HCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTT-S--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhccc-CCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 45666666666666541 2233333444556677777777 212122 24667776665533 36676777777666
Q ss_pred HHHhCC
Q 004814 303 DMLKLG 308 (729)
Q Consensus 303 ~m~~~~ 308 (729)
++...|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 665554
No 364
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.37 E-value=6.8 Score=25.86 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=20.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
|+++|...|+.+.|.+++++++..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 6778888888888888888888654
No 365
>PRK11619 lytic murein transglycosylase; Provisional
Probab=71.28 E-value=1.8e+02 Score=32.74 Aligned_cols=252 Identities=10% Similarity=0.032 Sum_probs=121.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCC
Q 004814 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKG 327 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 327 (729)
..+..+.+.+++....+++.. .+.+...-.....+....|+.++|.+..+.+-..| ...+..++.++..+.+.|
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcC
Confidence 344455566676666653211 13344444556667777788777776666665554 234566777777776655
Q ss_pred CHHHH--HHHHHHHHHCCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 004814 328 LLVEA--LNLEEEMVTRGVAPTLATYNILIYGLCK------------WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGY 393 (729)
Q Consensus 328 ~~~~A--~~~~~~m~~~g~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (729)
.+... .+-+..+...| +...-..+...+.. ..+...+...+. .+.++...-..++.++
T Consensus 178 ~lt~~d~w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l 249 (644)
T PRK11619 178 KQDPLAYLERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAF 249 (644)
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHH
Confidence 54332 22222222222 11111112211100 011111111110 1112221111122222
Q ss_pred H--HcCCHHHHHHHHHHHhhCC-CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 394 C--RSGNIGEAFLLFDELRSRN-LVPTV--VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGN 468 (729)
Q Consensus 394 ~--~~g~~~~A~~l~~~m~~~~-~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (729)
. ...+.+.|..++....... ..+.. .+...+.......+...++...++...... .+......-+....+.++
T Consensus 250 ~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~d 327 (644)
T PRK11619 250 ASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGD 327 (644)
T ss_pred HHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccC
Confidence 2 2345577888887764432 22211 223344333333332456666666544332 244444555555567888
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 469 LSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLA 516 (729)
Q Consensus 469 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 516 (729)
++.+...+..|.... .-...-..=+..++...|+.++|...|+.+..
T Consensus 328 w~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 328 RRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888887775432 11333333445666668888888888888643
No 366
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.21 E-value=69 Score=30.12 Aligned_cols=68 Identities=16% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhcCCH-------HHHHHHHHHHHHcCCCC----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 630 TYNALINGLCRLRRI-------DQAYGLFIDMEEEGILP----N-KYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~-------~~A~~~~~~m~~~g~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
.+-.+.+.|...|+- ..|.+.|.+..+..-.| + ......++....+.|+.++|.+.|.+++..+-.+.
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 455566667766663 34555555555432121 1 22334556677788888888888888885544443
No 367
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=71.19 E-value=18 Score=38.50 Aligned_cols=86 Identities=15% Similarity=0.040 Sum_probs=42.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 571 MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 650 (729)
.|+...|.+.+..+........-+....|.+...+.|....|..++.+.+... ...+.++..++.+|....+++.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45555555555554433211112233334444455555555555555554432 23444555555555555566666666
Q ss_pred HHHHHHc
Q 004814 651 FIDMEEE 657 (729)
Q Consensus 651 ~~~m~~~ 657 (729)
|+++.+.
T Consensus 699 ~~~a~~~ 705 (886)
T KOG4507|consen 699 FRQALKL 705 (886)
T ss_pred HHHHHhc
Confidence 6555554
No 368
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.86 E-value=1.2e+02 Score=30.22 Aligned_cols=117 Identities=15% Similarity=0.078 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc-----C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR-----G--RLELAFMYFSEMQVKGIRPNVITYNALINGLCR----L 641 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~ 641 (729)
+..+|...++++.+.|..+-..+...+...|... - +...|...+.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 5556666666665555322122233333333322 1 2236777777776664 34444444444433 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHHCCCCC
Q 004814 642 RRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAG---------------NWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 642 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~~p 696 (729)
.+.++|...|++..+.|. ......+. .+...| +...|...+......+...
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 366777777777777662 22222232 344444 6666666666666544443
No 369
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=70.85 E-value=1.4e+02 Score=31.11 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=8.7
Q ss_pred HHHHHHhcCCHHHHHHHHH
Q 004814 354 LIYGLCKWGRVSDARHRFF 372 (729)
Q Consensus 354 li~~~~~~g~~~~A~~~~~ 372 (729)
+|+-|...|+..+..+.++
T Consensus 351 IIqEYFlsgDt~Evi~~L~ 369 (645)
T KOG0403|consen 351 IIQEYFLSGDTPEVIRSLR 369 (645)
T ss_pred HHHHHHhcCChHHHHHHHH
Confidence 4444444444444444444
No 370
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.46 E-value=1.5e+02 Score=31.31 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 424 LIDGLCRYGDLEVAQQLKENMINQGILPD 452 (729)
Q Consensus 424 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 452 (729)
++...+..|+.+ +.+.+++.|..++
T Consensus 205 ~l~~A~~~~~~~----iv~~Ll~~gad~n 229 (413)
T PHA02875 205 ALCYAIENNKID----IVRLFIKRGADCN 229 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHHCCcCcc
Confidence 333344455543 3333444554444
No 371
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=70.09 E-value=1.2e+02 Score=30.10 Aligned_cols=151 Identities=15% Similarity=0.079 Sum_probs=88.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c
Q 004814 185 KKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRD----NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK----E 256 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~ 256 (729)
..+.+..|...+......+ +......+...|.. ..+..+|.++|+...+.| +......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4556677777777777643 33445555555543 335778888888777765 33344445665554 3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----
Q 004814 257 GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNG-------ELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE---- 325 (729)
Q Consensus 257 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~---- 325 (729)
.+..+|...|++..+.|..+-..+...+...|..-+ +...|...+.++-..+ +......+...|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 478888888888888875543222333333333321 2336777777776665 33444444444432
Q ss_pred CCCHHHHHHHHHHHHHCCC
Q 004814 326 KGLLVEALNLEEEMVTRGV 344 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~ 344 (729)
..+..+|...|...-+.|.
T Consensus 204 ~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred CcCHHHHHHHHHHHHHCCC
Confidence 3356667777766666653
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.07 E-value=1.5e+02 Score=31.27 Aligned_cols=107 Identities=17% Similarity=0.095 Sum_probs=69.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CC--CC---ChhhHHHHHHHHHHcCCHHHHHHHHHHHHH-------CCCCCC----
Q 004814 567 ASLEMGDLRRGRDLFNNMLRK---GL--SP---TLVTYTVLIHAHAARGRLELAFMYFSEMQV-------KGIRPN---- 627 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~---~~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~g~~p~---- 627 (729)
.+.-.|++.+|.+++...--. |. .| .-..||.|...+.+.|.+..+..+|.++.. .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 355678888888887543211 21 11 122356676667777777777777777663 354442
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004814 628 -------VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCN 675 (729)
Q Consensus 628 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 675 (729)
..+||. +-.|...|+.-.|.+.|.+.+.. +.-++..|.-+..+|..
T Consensus 329 ls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 329 LSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 223443 34577889999999999888875 56788888888887764
No 373
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=69.90 E-value=2.1e+02 Score=32.76 Aligned_cols=99 Identities=11% Similarity=0.109 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHH
Q 004814 104 PRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIY 183 (729)
Q Consensus 104 ~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~ 183 (729)
.+....++.++....|+..+......+++ ...|.+..|+.++++++......+....+...... .+...+..++..
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~-~d~~~i~~ll~a- 255 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGA-LDQTYMVRLLDA- 255 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCC-CCHHHHHHHHHH-
Confidence 34555666666666677777777666664 34788999999998877654322222222111111 122334444443
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCC
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
...|+..+++..++++...|...
T Consensus 256 L~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 256 LAAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 34588999999999999888653
No 374
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=69.82 E-value=70 Score=27.28 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 626 PNVITYNALINGLCRLRR---IDQAYGLFIDMEEEGILPN--KYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 626 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+...+--.+.+++.+..+ +.+.+.+++++.+.. .|+ .....-|.-++.+.|++++++++.+.++ ..+||.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll--~~e~~n 104 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALL--ETEPNN 104 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH--hhCCCc
Confidence 444555556666666554 344566666666522 222 2233344456667777777777777777 444444
No 375
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=69.34 E-value=53 Score=26.23 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=28.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 602 AHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
.+...|++++|..+.+.. ..||...|-+| +-.+.|..+++..-+.+|...|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHHhCC
Confidence 345566666666655544 34566555554 2345555555555555555554
No 376
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.93 E-value=1.7e+02 Score=31.55 Aligned_cols=164 Identities=19% Similarity=0.126 Sum_probs=91.6
Q ss_pred ChhhHHHHHHHHHhc-cchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHH-------HHCCCCCC---
Q 004814 139 LLRSAYWVVETVVCV-NMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKM-------LRNGLLPD--- 207 (729)
Q Consensus 139 ~~~~A~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~--- 207 (729)
.+++|..-|.-+... +|+.+...++.+ +.-....-.+..++-.+|+.+.|..+.++. ..-.+.|.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ss----PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~ 328 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISS----PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGN 328 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccC----CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccc
Confidence 345566555544443 444433333322 334555667777888888877776665554 33322221
Q ss_pred ---------hHh-HH---HHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHHHhCC
Q 004814 208 ---------VKN-CN---RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC-KEGEMQEALELLWEMQGRG 273 (729)
Q Consensus 208 ---------~~~-~~---~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~ 273 (729)
... |. .-+..+.+.|-+..|+++.+-+.+.....|+.....+|+.|+ +..+|+.-++++++.....
T Consensus 329 cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n 408 (665)
T KOG2422|consen 329 CRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMN 408 (665)
T ss_pred ccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Confidence 111 22 223455677888888888888877764446777777777766 5677777777777764432
Q ss_pred ---CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHh
Q 004814 274 ---CSPNGVTYNVLITGFSRNGE---LEQARGLIRDMLK 306 (729)
Q Consensus 274 ---~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~ 306 (729)
.-||-.--.+|+..|.+... ...|...+.++.+
T Consensus 409 ~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 409 KLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred cHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 23443333344445544433 3445555555544
No 377
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=68.68 E-value=2.6 Score=36.77 Aligned_cols=52 Identities=6% Similarity=0.073 Sum_probs=24.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHH
Q 004814 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYR 232 (729)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~ 232 (729)
..|.+.+..+.....++.+...+...+....+.++..|++.++.+...++++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3344445555555555555544433344445555555555554444444444
No 378
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.93 E-value=73 Score=30.93 Aligned_cols=85 Identities=15% Similarity=0.065 Sum_probs=54.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRK--GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR-- 640 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~-- 640 (729)
|.+++..+++.++....-+.-.. .+||. +...-|-.|.+.|++..+.++-......--.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 67788888888877765444332 23443 3344445578888888888877777664222233447766665544
Q ss_pred ---cCCHHHHHHHH
Q 004814 641 ---LRRIDQAYGLF 651 (729)
Q Consensus 641 ---~g~~~~A~~~~ 651 (729)
.|.+++|.++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888888777
No 379
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=2.2e+02 Score=31.86 Aligned_cols=309 Identities=13% Similarity=0.053 Sum_probs=159.3
Q ss_pred HHHcCCHHHHHHHHHHHhhCCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 393 YCRSGNIGEAFLLFDELRSRNLVPTVVTY----NTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGN 468 (729)
Q Consensus 393 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (729)
....|+..+|.+++.-.....-.+ ...| ..+.-++...|..+...+.+.+.++..-.+....-..|.-++...|.
T Consensus 367 vIH~G~~~~~~~ll~pYLP~~~~~-~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGS 445 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAPYLPKEAGE-GSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGS 445 (929)
T ss_pred eeeccccchHHHHhhhhCCccCCC-CCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhccc
Confidence 345678888888887654431111 1122 11222344455555577777666665323233333344444555554
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHhcCCH-HHHHH-HHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 004814 469 LSMAREFFNEMLRKGLQPDRFAYT--TQIAGELKLGDT-SEAYR-LQEEMLAKGFPPDLITYN--VLVHGLCKLGSLEEA 542 (729)
Q Consensus 469 ~~~A~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~-~~A~~-l~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A 542 (729)
.+ .++|+.+.+.-..-+..+-. .+..+++-.|.. .+|++ ++.-..+.. -..+.. .+.-++.--|+-++|
T Consensus 446 a~--~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~eaiedm~~Ya~ETQ---Heki~RGl~vGiaL~~ygrqe~A 520 (929)
T KOG2062|consen 446 AN--EEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQEAIEDMLTYAQETQ---HEKIIRGLAVGIALVVYGRQEDA 520 (929)
T ss_pred cc--HHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcHHHHHHHHHHhhhhh---HHHHHHHHHHhHHHHHhhhhhhh
Confidence 32 34555554432222222211 222334433332 22222 222222211 111112 223345556778899
Q ss_pred HHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 543 NELLRKMVGDGFIPDHI--TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 543 ~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
..+.++|.... .|-.. -.-++..+|+-.|+.....+++.-..+.. ..|+.-+..+.-++.-..+++....+.+-+.
T Consensus 521 d~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~-nDDVrRaAVialGFVl~~dp~~~~s~V~lLs 598 (929)
T KOG2062|consen 521 DPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV-NDDVRRAAVIALGFVLFRDPEQLPSTVSLLS 598 (929)
T ss_pred HHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccccc-chHHHHHHHHHheeeEecChhhchHHHHHHh
Confidence 99999998753 22111 23345667888888888888877766543 4556666666667778888998888888777
Q ss_pred HCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---HHHHHhcC-----CHHHHHHHHHHHH
Q 004814 621 VKGIRPNVITYN--ALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTIL---INENCNAG-----NWQEALRLYKEML 690 (729)
Q Consensus 621 ~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---~~~~~~~g-----~~~~A~~~~~~m~ 690 (729)
+. ..|....-. +|+-+|.-.|. .+|+.+++-|... +.|.+--.++ .-..+++. ++..-++.|.+.+
T Consensus 599 es-~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~D--~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI 674 (929)
T KOG2062|consen 599 ES-YNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTSD--PVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVI 674 (929)
T ss_pred hh-cChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhcC--hHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHh
Confidence 65 444443323 33444555554 7899999999862 2222222222 22333432 4566666777766
Q ss_pred HCCCCCCHHHHHHHHHhhhccch
Q 004814 691 DREIEPDYCTHSALLLKQLDKDY 713 (729)
Q Consensus 691 ~~~~~pd~~~~~~ll~~~l~~~g 713 (729)
...-+-..+-+.++|+..+-..|
T Consensus 675 ~dKhEd~~aK~GAilAqGildaG 697 (929)
T KOG2062|consen 675 NDKHEDGMAKFGAILAQGILDAG 697 (929)
T ss_pred hhhhhHHHHHHHHHHHhhhhhcC
Confidence 32222223445555555554333
No 380
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.61 E-value=27 Score=37.23 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=74.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 004814 533 LCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELA 612 (729)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 612 (729)
+...|+...|...+..+....+.-..+....+.+...+.|-.-.|..++.+.+... ...+.++..+..+|....+++.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34468888888888877665433344455666677777788888888888877765 44566778888889989999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 613 FMYFSEMQVKGIRPNVITYNALINGLC 639 (729)
Q Consensus 613 ~~~~~~~~~~g~~p~~~~~~~l~~~~~ 639 (729)
++.|+++.+... -+...-+.|...-|
T Consensus 696 ~~~~~~a~~~~~-~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTT-KCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCC-CChhhHHHHHHHHH
Confidence 999998888632 25555555554444
No 381
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.03 E-value=1.9e+02 Score=30.84 Aligned_cols=178 Identities=12% Similarity=0.043 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
|.....+++..+.++.+..-...+..+|+.-| .+-..|..++..|..+ .-++-..+++++.+..+. |++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445556666666666666666666666655 4566667777777666 445556666666654321 3333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHh
Q 004814 427 GLCRYGDLEVAQQLKENMINQGIL-----PDVITYTIMVNGSCKMGNLSMAREFFNEMLRK-GLQPDRFAYTTQIAGELK 500 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~~~~~~~~~li~~~~~ 500 (729)
+...++.+.+...|.++..+=++ .-...|..+... -..+.+....+...+... |...-...+..+-.-|..
T Consensus 141 -~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 -KYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred -HHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 33336666666666666544211 012234444321 133444455544444432 222223334444455555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004814 501 LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHG 532 (729)
Q Consensus 501 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~ 532 (729)
..++++|++++..+++.+ ..|..+-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHD-EKDVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHH
Confidence 666666666666666553 3344444444443
No 382
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=65.24 E-value=1.7e+02 Score=30.14 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchh---hhHH----Hhh-cC-CCC--cchHHHHHHHHHHHHcCCCHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHG---ILDV----LIG-GG-LSS--CVSIKILDLLLLIYTKKSMVE 190 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~---~~~~----l~~-~~-~~~--~~~~~~~~~l~~~~~~~g~~~ 190 (729)
--+.++..+..++...|+...|..++++++-.--.. .+.. +.. .+ ++. ..|...|..
T Consensus 38 yHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffla------------ 105 (360)
T PF04910_consen 38 YHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLA------------ 105 (360)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHH------------
Confidence 456788889999999999999999998877432110 0100 000 00 000 011111111
Q ss_pred HHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHHHHHHHHHHH
Q 004814 191 QCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC-KEGEMQEALELLWEM 269 (729)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m 269 (729)
.-..+..+.++|-+..|.++.+-+...+...|+..-..+|+.|+ +.++++--+++.+..
T Consensus 106 --------------------l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 106 --------------------LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred --------------------HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 11234556667777777777777777663336666666666665 566676666666665
Q ss_pred Hh
Q 004814 270 QG 271 (729)
Q Consensus 270 ~~ 271 (729)
..
T Consensus 166 ~~ 167 (360)
T PF04910_consen 166 LA 167 (360)
T ss_pred hh
Confidence 44
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=64.56 E-value=9 Score=21.98 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccc
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNM 155 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 155 (729)
.+|..+..++...|++++|...++++++..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3567888889999999999999988877654
No 384
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.32 E-value=12 Score=38.88 Aligned_cols=102 Identities=12% Similarity=-0.042 Sum_probs=53.9
Q ss_pred HHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHH
Q 004814 134 LIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNR 213 (729)
Q Consensus 134 l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 213 (729)
..+.+.|+.|..++.++++.+|+. ...|..=..++.+.+++..|+.=+.++++..+. -...|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnc---------------a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~r 77 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNC---------------AIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVR 77 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcc---------------eeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeee
Confidence 344556666777777777766642 111222224566667777777666666665422 2233333
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 214 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
-..++.+.+++.+|...|+..... .|+..-...+++-|
T Consensus 78 rg~a~m~l~~~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 78 RGTAVMALGEFKKALLDLEKVKKL--APNDPDATRKIDEC 115 (476)
T ss_pred ccHHHHhHHHHHHHHHHHHHhhhc--CcCcHHHHHHHHHH
Confidence 444444555555555555555543 45555444444443
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.93 E-value=1.1e+02 Score=29.89 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=42.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----
Q 004814 495 IAGELKLGDTSEAYRLQEEMLAK--GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS---- 568 (729)
Q Consensus 495 i~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---- 568 (729)
|+++...+++.+++...-+--+. .+|| .....-|-.|.+.+.+..+.++-...+...-.-+..-|..++..|
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45666666666665544333222 1222 233333444666666666666666555432222333355544443
Q ss_pred -HhcCCHHHHHHHH
Q 004814 569 -LEMGDLRRGRDLF 581 (729)
Q Consensus 569 -~~~g~~~~A~~~~ 581 (729)
.-.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 3346666666655
No 386
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.55 E-value=1.4e+02 Score=28.23 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHHHHHH
Q 004814 326 KGLLVEALNLEEEMVT 341 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~ 341 (729)
.+++.+|+++|++...
T Consensus 167 leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 387
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.11 E-value=1.6e+02 Score=28.68 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHHhCCCHHHHHHHH
Q 004814 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN-------VLITGFSRNGELEQARGLI 301 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-------~li~~~~~~g~~~~A~~~~ 301 (729)
-+.+-..+.+++++|...+.++...|+..|..+.| .+...|.+.|+...-.+..
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 34555667788888888888888888777765543 3445555555554444433
No 388
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=61.97 E-value=1.6e+02 Score=28.67 Aligned_cols=95 Identities=18% Similarity=0.198 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHH-HHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHH
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNML----RKGLSPTLVTYTVL-IHAHAARGRLELAFMYFSEMQVK----GIRPNVITYN 632 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~ 632 (729)
..++..+.+.|.+.+|+.+...+. +..-+++..+...+ -.+|-.-.+..++..-+..+... -++|....--
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 346677788888888887765544 22334443333222 23455555555554444443321 2333333333
Q ss_pred HHHHH--HHhcCCHHHHHHHHHHHHH
Q 004814 633 ALING--LCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 633 ~l~~~--~~~~g~~~~A~~~~~~m~~ 656 (729)
-++.+ .|...++..|..+|-+..+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 33333 3455567777777777665
No 389
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.48 E-value=3.1e+02 Score=31.86 Aligned_cols=65 Identities=18% Similarity=0.131 Sum_probs=37.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
+..=+..+.....|++|..+.+-....+|..-...- -...... +--+..+|++++|.+.|.++..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~---------~~~~l~~-a~~lf~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQIS---------CIKILID-AFELFLQKQFEEAMSLFEKSEI 374 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHH---------HHHHHHH-HHHHHHhhhHHHHHHHHHhhcc
Confidence 445555666667788888777665544443211000 0001110 2335688999999999998875
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=61.28 E-value=61 Score=25.17 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=21.7
Q ss_pred HcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 004814 395 RSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVA 437 (729)
Q Consensus 395 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A 437 (729)
..|+.+.|.+++..+. +| +..|..++.++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhh
Confidence 4466666666666665 43 34455666666666654444
No 391
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=60.72 E-value=1.6e+02 Score=28.08 Aligned_cols=115 Identities=11% Similarity=0.015 Sum_probs=62.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCCHHHHHH
Q 004814 222 GFSVKAREVYRMMGEFGIKPSI-VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT-YNVLITGFSRNGELEQARG 299 (729)
Q Consensus 222 g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~ 299 (729)
.+++.|+..|.+.+.. .|++ .-|..-+-.+.+..+++.+..--.+..+. .||.+- .--+..++.....+++|+.
T Consensus 24 k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 3455555555555543 2443 23334444555556666655555454443 455543 3334455666777888888
Q ss_pred HHHHHHh----CCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 300 LIRDMLK----LGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 300 ~~~~m~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
.+.+... ..+.+-......|..+--+.=...+..++.++..
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 8887743 2344445566666665555555555655555443
No 392
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.48 E-value=1.7e+02 Score=28.51 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 346 PTLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 346 p~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
.++.....+...|.+.|++.+|+..|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 35666677777777777777776655
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.23 E-value=29 Score=26.32 Aligned_cols=47 Identities=9% Similarity=0.029 Sum_probs=27.9
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 605 ARGRLELAFMYFSEMQVKGIRPN--VITYNALINGLCRLRRIDQAYGLF 651 (729)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~ 651 (729)
...+.++|+..|...++.-..+. -.++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766532221 124556666777777777766553
No 394
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=58.75 E-value=1.3e+02 Score=30.11 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=42.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHH--HHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH-HHHH
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRK---GLSPTLVTYTV--LIHAHAARGRLELAFMYFSEMQV-----KGIRPNVI-TYNA 633 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~-~~~~ 633 (729)
+...-+.++.++|+++++++.+. .-.|+.+.|.. .+..+...|+.+++.+.+++..+ .|++|+.. .|+.
T Consensus 82 l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ 161 (380)
T KOG2908|consen 82 LVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYS 161 (380)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHH
Confidence 33444556777777777777653 22455554433 34445566777777777776665 45655443 3444
Q ss_pred HHHHHH
Q 004814 634 LINGLC 639 (729)
Q Consensus 634 l~~~~~ 639 (729)
+..-|.
T Consensus 162 lssqYy 167 (380)
T KOG2908|consen 162 LSSQYY 167 (380)
T ss_pred HHHHHH
Confidence 444433
No 395
>PHA02875 ankyrin repeat protein; Provisional
Probab=58.16 E-value=2.5e+02 Score=29.60 Aligned_cols=203 Identities=12% Similarity=0.012 Sum_probs=96.7
Q ss_pred HHHHHHHCCCCCChHh--HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 195 VFNKMLRNGLLPDVKN--CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV--TYNTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 195 ~~~~~~~~~~~~~~~~--~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
+++.+++.|..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ....-+...++.|+.+.+..+++.-.
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~ 92 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK 92 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCC
Confidence 3444555676665433 223455555667664 334445555444432 12334566778888887666654321
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhh--HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 004814 271 GRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHS--YNPIICGYSEKGLLVEALNLEEEMVTRGVAPTL 348 (729)
Q Consensus 271 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 348 (729)
......+.. -.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+.-+ .+.|..++.
T Consensus 93 ~~~~~~~~~-g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L----l~~g~~~~~ 163 (413)
T PHA02875 93 FADDVFYKD-GMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL----IDHKACLDI 163 (413)
T ss_pred cccccccCC-CCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HhcCCCCCC
Confidence 110000111 123344445666654 4455556665554321 12344455667776554444 344443332
Q ss_pred HH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH---HHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 004814 349 AT--YNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS---YNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV 418 (729)
Q Consensus 349 ~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 418 (729)
.. -.+-+...+..|..+ +.+.+++.|..++... ..+++...+..|+.+- .+-+.+.|..++.
T Consensus 164 ~d~~g~TpL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~gad~n~ 230 (413)
T PHA02875 164 EDCCGCTPLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGADCNI 230 (413)
T ss_pred CCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCcCcch
Confidence 11 112333445566654 3444555665555332 1244554556666543 3444556655553
No 396
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=57.57 E-value=1.2e+02 Score=32.76 Aligned_cols=97 Identities=19% Similarity=0.233 Sum_probs=61.6
Q ss_pred ChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhh----HHHhhcCCCCcchHHHHHH
Q 004814 103 KPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGIL----DVLIGGGLSSCVSIKILDL 178 (729)
Q Consensus 103 ~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~ 178 (729)
+.+.-..++..+..+.|+..+..++..+.+ ...|.+++|..++++++......+. ..+.+. . +......
T Consensus 179 ~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~--~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~-~----~~~~~~~ 251 (515)
T COG2812 179 DLEEIAKHLAAILDKEGINIEEDALSLIAR--AAEGSLRDALSLLDQAIAFGEGEITLESVRDMLGL-T----DIEKLLS 251 (515)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHH--HcCCChhhHHHHHHHHHHccCCcccHHHHHHHhCC-C----CHHHHHH
Confidence 456667888888888999999999887775 4688899999999999887542111 111111 1 1111112
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPD 207 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 207 (729)
++. ....|+..+++..++++.+.|..|.
T Consensus 252 ~~~-~i~~~d~~~~~~~~~~l~~~G~~~~ 279 (515)
T COG2812 252 LLE-AILKGDAKEALRLINELIEEGKDPE 279 (515)
T ss_pred HHH-HHHccCHHHHHHHHHHHHHhCcCHH
Confidence 222 1345677777777777777775543
No 397
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.30 E-value=90 Score=29.38 Aligned_cols=90 Identities=18% Similarity=0.106 Sum_probs=60.3
Q ss_pred HHhcCCHHHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHhcCC-------HHHHHHHHHHHHHCCCCC----CHHH
Q 004814 638 LCRLRRIDQAYGLFIDMEE----EGILPNK--YTYTILINENCNAGN-------WQEALRLYKEMLDREIEP----DYCT 700 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~----~g~~p~~--~~~~~l~~~~~~~g~-------~~~A~~~~~~m~~~~~~p----d~~~ 700 (729)
+.....+++|++.+.-+.- .+-+|.. ..+..+.+.|...|+ ...|.+.|++..+.+-.| +..+
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 4455567777766655432 2323332 355667788888888 456777777777544332 4566
Q ss_pred HHHHHHhhhccchhhc-HHHHHHHhhcc
Q 004814 701 HSALLLKQLDKDYKVH-AVEYLESLTLG 727 (729)
Q Consensus 701 ~~~ll~~~l~~~g~~~-a~~~l~~l~~~ 727 (729)
...+++++..+-|+.+ |.+++.++.-.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 7777788889999998 99999887654
No 398
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.73 E-value=1e+02 Score=26.05 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 646 QAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
++.++|+.|..+|+--.. ..|......+...|++++|.++|+..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 777777777776655443 35666777777778888887777654
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.93 E-value=28 Score=32.13 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=49.0
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccc
Q 004814 100 IREKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNM 155 (729)
Q Consensus 100 ~~~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~ 155 (729)
...+++....+.+|+.+--...|++..|..++.++...|+.++|.....++...-|
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34577778888999988777889999999999999999999999999999887766
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.67 E-value=2e+02 Score=30.00 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHHC
Q 004814 531 HGLCKLGSLEEANELLRKMVGDGFIPDHI--TYTSIIHAS--LEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 531 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 587 (729)
..+.+.+++..|.++++.+... ++++.. .+..+..+| -..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444677888888888887775 343333 334444443 3456777777777776654
No 401
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.58 E-value=73 Score=25.31 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=33.8
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 648 YGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 648 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
.+.+++...++....+.....|.-.|.+.|+-+.|++-|+.=. .+-|...++..+
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~fmDF 111 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchhHHHH
Confidence 3445555554444444455556666777777777777776654 566776666665
No 402
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.39 E-value=3.8e+02 Score=30.85 Aligned_cols=169 Identities=16% Similarity=0.152 Sum_probs=85.2
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCChH--hHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVK--NCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
+.|...|.++.|++.-+.- |+.. .+..-+..|.+.+++..|-++|.++.+ .|..+.--+....+
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~~ 431 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEINQ 431 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcCC
Confidence 5688899999998876532 2322 223345567788899999999988853 23333333444555
Q ss_pred HHHHHHHH-HHHHhCCCCCCHHHHHH-----HHHHHH-hCCCHH----HHHHHHHHHH--------h-CCCccChhhHHH
Q 004814 259 MQEALELL-WEMQGRGCSPNGVTYNV-----LITGFS-RNGELE----QARGLIRDML--------K-LGLKVSAHSYNP 318 (729)
Q Consensus 259 ~~~A~~~~-~~m~~~~~~p~~~~~~~-----li~~~~-~~g~~~----~A~~~~~~m~--------~-~~~~~~~~~~~~ 318 (729)
.+ ++..| .+=.++ ++|...+-.. ++..|. +.++++ ++.+-++.-. . .....+...+.+
T Consensus 432 ~~-~L~~~L~KKL~~-lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 432 ER-ALRTFLDKKLDR-LTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred HH-HHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 55 44433 332332 4444333222 223222 223222 2222211111 0 001112223334
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 319 IICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
....+...|+.++...+-.-|.. |..++..+++.|.+++|++++..-
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556666666555444432 455666677777777777666543
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.13 E-value=2.1e+02 Score=27.89 Aligned_cols=25 Identities=12% Similarity=0.089 Sum_probs=12.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 557 DHITYTSIIHASLEMGDLRRGRDLF 581 (729)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~ 581 (729)
|+.....+...|.+.|++.+|...|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3444555555566666666655444
No 404
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.40 E-value=2.2e+02 Score=27.86 Aligned_cols=24 Identities=13% Similarity=0.198 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNN 583 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~ 583 (729)
.+..+..-|++.++.+.+.+..++
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHH
Confidence 344444445555555555444433
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.33 E-value=1e+02 Score=24.21 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 662 NKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 662 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
|...-..+...+...|++++|++.+-+++
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444455555555555555555554
No 406
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.21 E-value=70 Score=26.19 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
-|..|+..|...|+.++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355677777777888888888777766
No 407
>PRK10941 hypothetical protein; Provisional
Probab=54.08 E-value=1.1e+02 Score=30.03 Aligned_cols=61 Identities=15% Similarity=0.010 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
++.+.|-.+|.+.++++.|+.+.+.++...+. |..-+.--.-.|.+.|.+..|..=++..+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 34445555555555555555555555554432 33333334444555555555544444443
No 408
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.04 E-value=97 Score=25.99 Aligned_cols=43 Identities=9% Similarity=0.127 Sum_probs=24.4
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
+-++.....++.|++.....-+.+|.+.+++..|+++|+-+..
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444445556666666666666666666666666655554
No 409
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=53.56 E-value=1.1e+02 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.013 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 204 (729)
+......++..+...|++++|++.+-.+++...
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr 53 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDR 53 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 455566677777888888888887777776543
No 410
>PRK10941 hypothetical protein; Provisional
Probab=53.21 E-value=1.7e+02 Score=28.70 Aligned_cols=58 Identities=10% Similarity=-0.055 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+.+-.+|.+.++++.|.+..+.+.... +.++.-+.--+-.|.+.|.+..|..-++..+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 445556777777777777777777753 4445556666666777777777777777776
No 411
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.07 E-value=2.4e+02 Score=27.82 Aligned_cols=55 Identities=15% Similarity=0.036 Sum_probs=26.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHH
Q 004814 416 PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ-GILPDVITYTIMVNGSCKMGNLS 470 (729)
Q Consensus 416 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~ 470 (729)
++..+...++..+++.+++..-.++++..... +...|...|..+++...+.|+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 34444444455555555555555555444433 33344445555555555555443
No 412
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=53.05 E-value=1.7e+02 Score=28.12 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHH---cCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 004814 644 IDQAYGLFIDMEE---EGILPNKYTYTILIN-----ENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 644 ~~~A~~~~~~m~~---~g~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~ 691 (729)
.++|.+.|+++.+ ..++|...++-.|+- .|-..|+.++|.++.+++.+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3566666666553 226676666554432 34568999999999888763
No 413
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.09 E-value=10 Score=37.50 Aligned_cols=119 Identities=15% Similarity=0.075 Sum_probs=74.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 004814 568 SLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVI-TYNALINGLCRLRRIDQ 646 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~ 646 (729)
....|.+++|++.|...+..+ ++....|..-.+++.+.+++..|++=+....+. .||.. -|-.-..+-.-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHH
Confidence 345677778888877777765 556666766677777777777777777777663 44432 34334445555677788
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 647 AYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 647 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
|...+....+.++.+....| +=...-.++..++-...+++..+
T Consensus 201 aa~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 201 AAHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHH
Confidence 88877777776655544433 22333445555666666666553
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=50.92 E-value=95 Score=24.52 Aligned_cols=53 Identities=17% Similarity=0.193 Sum_probs=30.8
Q ss_pred HhcCCHHHHHHHHHHHHH----cCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 639 CRLRRIDQAYGLFIDMEE----EGILPN----KYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~----~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.+.|++.+|.+.+.+..+ .+.... ......+.......|++++|+..++++++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777555554443 221110 12233455566778888888888888874
No 415
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=50.86 E-value=34 Score=35.73 Aligned_cols=105 Identities=14% Similarity=0.008 Sum_probs=74.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHh-HHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKN-CNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (729)
+..+.+.+.++.|+.++.++++.. |+... |..-..++.+.+++..|+.=+..+++.. +-....|..-..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 344567788899999999999875 43333 3334467788889999988888888765 3344456666677777788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 259 MQEALELLWEMQGRGCSPNGVTYNVLITGFS 289 (729)
Q Consensus 259 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 289 (729)
+.+|+..|+..... .|+..-....+.-|-
T Consensus 88 ~~~A~~~l~~~~~l--~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 88 FKKALLDLEKVKKL--APNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHhhhc--CcCcHHHHHHHHHHH
Confidence 88888888887764 777776666665543
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.84 E-value=42 Score=24.16 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=8.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~ 619 (729)
++.+|...|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 344444444444444444443
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.70 E-value=2.7e+02 Score=27.83 Aligned_cols=93 Identities=17% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH-
Q 004814 423 TLIDGLCRYGDLEVAQQLKENMIN----QGILPDVITYTIMVNGS-CKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIA- 496 (729)
Q Consensus 423 ~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~- 496 (729)
.....||+.|+.+.|.+.+++..+ .|.+.|+..+..-+..+ ....-+.+-++..+.+.+.|...+...-...-.
T Consensus 109 ~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~G 188 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQG 188 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHH
Confidence 344455555665555555444332 24444544443322222 222223344444444555554444322111111
Q ss_pred -HHHhcCCHHHHHHHHHHHH
Q 004814 497 -GELKLGDTSEAYRLQEEML 515 (729)
Q Consensus 497 -~~~~~g~~~~A~~l~~~~~ 515 (729)
-+....++.+|-.+|-+.+
T Consensus 189 ly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 189 LYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHhHHHHHHHHHHHc
Confidence 1223345555655555544
No 418
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=50.47 E-value=46 Score=23.96 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
-.-.+|.+|...|++++|.++++++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455566666666666666666554
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.70 E-value=3.4e+02 Score=28.68 Aligned_cols=84 Identities=14% Similarity=0.080 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 606 RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR-----IDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQ 680 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~-----~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 680 (729)
.++.+.|+..+..|.+.|..|....-..+..++...|. ..-|...++.....|++.........+--++.+-+-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~pe~~~~l~~~~~~l~~~pksn 322 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMPEGRIALAQAVIYLALAPKSN 322 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCCcc
Confidence 35666677777777766665554444444444444432 2223333444444564443333333333344444433
Q ss_pred HHHHHHHHH
Q 004814 681 EALRLYKEM 689 (729)
Q Consensus 681 ~A~~~~~~m 689 (729)
.+...++++
T Consensus 323 ~~~~a~~~a 331 (413)
T PRK13342 323 AAYTAINAA 331 (413)
T ss_pred HHHHHHHHH
Confidence 333333333
No 420
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=49.47 E-value=2.8e+02 Score=27.70 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCC----CCH
Q 004814 453 VITYTIMVNGSCKMGNLSMAREFFNEMLR----KGLQPDRFAYTTQIAG-ELKLGDTSEAYRLQEEMLAKGFP----PDL 523 (729)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~g~~~~~~~~~~li~~-~~~~g~~~~A~~l~~~~~~~~~~----~~~ 523 (729)
...+......||+.|+-+.|.+.+++..+ .|.+.|...+..-+.. |....-+.+-++..+.+.+.|-. .-.
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 45666778889999999999988877655 4666676655544433 33333445555555556555532 223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGD 552 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 552 (729)
.+|..+- +....++.+|-.+|-+.+..
T Consensus 184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 184 KVYQGLY--CMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHccc
Confidence 4454443 23455788888888776654
No 421
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.86 E-value=2.3e+02 Score=27.14 Aligned_cols=40 Identities=5% Similarity=-0.101 Sum_probs=17.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 424 LIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGS 463 (729)
Q Consensus 424 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (729)
++..+-+.|+++++...+.++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3344444555555555555555544444444444444444
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=47.17 E-value=2.1e+02 Score=29.84 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=9.1
Q ss_pred cCCHHHHHHHHHHHHH
Q 004814 361 WGRVSDARHRFFEMLR 376 (729)
Q Consensus 361 ~g~~~~A~~~~~~~~~ 376 (729)
.|++++|...+-++++
T Consensus 254 ~gryddAvarlYR~lE 269 (379)
T PF09670_consen 254 QGRYDDAVARLYRALE 269 (379)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5666666655554443
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.07 E-value=3.5e+02 Score=28.04 Aligned_cols=96 Identities=9% Similarity=0.004 Sum_probs=58.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--CChHhHHHHHHHHHHCCChhHHHHHHHHHHhC---------CCC
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL--PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF---------GIK 240 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~---------~~~ 240 (729)
-...+.-+...|..+|+++.|++.|.++...--. --+..|..++.+-.-.|+|.....+-.+.... .++
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~ 228 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVP 228 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence 3677888999999999999999999996653111 01233445555556677776666665555442 123
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 241 PSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
+-..++..+..... ++++.|.+.|-..
T Consensus 229 ~kl~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 229 AKLKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred cchHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 33444444444443 3677766665444
No 424
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=46.66 E-value=26 Score=29.66 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=17.6
Q ss_pred HHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 219 RDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 219 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
.+.|.-.+|-.+|++|++.|-+||. |+.|+.
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3445555666666666666655554 555544
No 425
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=45.89 E-value=1.4e+02 Score=23.22 Aligned_cols=62 Identities=6% Similarity=-0.042 Sum_probs=29.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 613 FMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQ 680 (729)
Q Consensus 613 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 680 (729)
.++++...++|+- +......+-.+-...|+.+.|.+++..+. +| +..|...+.++...|.-.
T Consensus 22 ~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 22 RDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHE 83 (88)
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchh
Confidence 3455555555433 22222333222234466666666666665 43 234455555555555443
No 426
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.81 E-value=19 Score=30.41 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=11.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH
Q 004814 676 AGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 676 ~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
.|.-.+|..+|++|++.|-.||.
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd 130 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD 130 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc
Confidence 34444455555555555555543
No 427
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=45.20 E-value=2.8e+02 Score=26.49 Aligned_cols=106 Identities=17% Similarity=-0.012 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCC--------cchHHHHHHHHHHHHcCCCHHHHHHHH
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSS--------CVSIKILDLLLLIYTKKSMVEQCLLVF 196 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~ 196 (729)
.+...-++-|.+.|++++|..-+..++.. ++.|.-..... .....++....+++...|++-++++.-
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~-----l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIIC-----LRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHH-----HHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 34445556678889999998887776542 11111000000 001223334445555566666666666
Q ss_pred HHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 197 NKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 197 ~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
.+++...+. ++.+|..-..+.+..=+.++|..=|..+++
T Consensus 254 seiL~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 254 SEILRHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHhcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 666655433 555555555555555555555555555554
No 428
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=44.26 E-value=6.2e+02 Score=30.13 Aligned_cols=246 Identities=11% Similarity=0.001 Sum_probs=129.0
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004814 416 PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQI 495 (729)
Q Consensus 416 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 495 (729)
+|..+-...+..+.+.+..+ +...+..+++ .++..+-...+.++.+.+........+..+++. +|...-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 45555555566666665433 4444444443 234444444444444433221122333333332 3555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 496 AGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLR 575 (729)
Q Consensus 496 ~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 575 (729)
..+...+..+ .. .+-..++ .+|...-...+.++.+.+..+. +..+.. .++...-.....++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 5554433211 11 2222222 3455555666666666554322 222332 345566666666666666543
Q ss_pred H-HHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 576 R-GRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDM 654 (729)
Q Consensus 576 ~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 654 (729)
. +...+..+.+ .+|...-...+.++...|....+...+..+.+. ++...-...+.++.+.+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 2 3444545544 356777777788888888765554555555543 455555556667776665 4566666666
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 655 EEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 655 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+ .|+...-...+.++.+.+.-..+...+..++
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 64 4566666666667766533456677777766
No 429
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=44.22 E-value=14 Score=36.55 Aligned_cols=88 Identities=11% Similarity=-0.068 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS-IVTYNTMLDSFCKEGEMQEALE 264 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 264 (729)
.|.++.|++.|-..++..+. ....|..-.+++.+.++...|++=++..++.+ || ..-|-.-..+..-.|++++|..
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHHH
Confidence 34444444444444443321 22233333444445555555555554444432 22 1122222223333455555555
Q ss_pred HHHHHHhCCCCC
Q 004814 265 LLWEMQGRGCSP 276 (729)
Q Consensus 265 ~~~~m~~~~~~p 276 (729)
.|....+.+..+
T Consensus 204 dl~~a~kld~dE 215 (377)
T KOG1308|consen 204 DLALACKLDYDE 215 (377)
T ss_pred HHHHHHhccccH
Confidence 555555554433
No 430
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=43.85 E-value=1.8e+02 Score=23.74 Aligned_cols=19 Identities=5% Similarity=0.013 Sum_probs=7.6
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 004814 639 CRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~ 657 (729)
.+.|..+++...+.++...
T Consensus 80 ~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 80 WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHCT-HHHHHHHHHHHCT-
T ss_pred HhhccHHHHHHHHHHHHhC
Confidence 3444444444444444433
No 431
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.37 E-value=4.1e+02 Score=27.47 Aligned_cols=122 Identities=13% Similarity=0.106 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH---HHCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVL---RDNGFSVKAREVYRMMGEFGIKPSIVTYNT 248 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l---~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 248 (729)
-...+-.+..++..+|+.+.|.+++++++-.- + .++......+ ...|.. . .......|...|.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~---e-~~~~~~F~~~~~~~~~g~~---r------L~~~~~eNR~ffla 105 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAF---E-RAFHPSFSPFRSNLTSGNC---R------LDYRRPENRQFFLA 105 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---H-HHHHHHhhhhhcccccCcc---c------cCCccccchHHHHH
Confidence 35566677778888888888888888776310 0 0011111000 000100 0 00111223333333
Q ss_pred ---HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHh
Q 004814 249 ---MLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFS-RNGELEQARGLIRDMLK 306 (729)
Q Consensus 249 ---li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 306 (729)
.+..+.+.|-+..|+++.+-+......-|...-...|+.|+ +.++++--.++.+....
T Consensus 106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 35566778888888888888877654445655556666665 56777777777776554
No 432
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.97 E-value=2.9e+02 Score=25.36 Aligned_cols=16 Identities=31% Similarity=0.223 Sum_probs=8.1
Q ss_pred hCCCHHHHHHHHHHHH
Q 004814 325 EKGLLVEALNLEEEMV 340 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~ 340 (729)
+.|+++.|.+.++-|.
T Consensus 133 ~~~~~~~Ae~~~~~ME 148 (204)
T COG2178 133 RKGSFEEAERFLKFME 148 (204)
T ss_pred HhccHHHHHHHHHHHH
Confidence 3455555555555544
No 433
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.95 E-value=1e+02 Score=20.71 Aligned_cols=29 Identities=14% Similarity=0.074 Sum_probs=13.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004814 640 RLRRIDQAYGLFIDMEEEGILPNKYTYTI 668 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 668 (729)
+.|-.+++..++++|.+.|+..+...|..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 33444444444444444444444444433
No 434
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.84 E-value=1.9e+02 Score=28.96 Aligned_cols=96 Identities=16% Similarity=0.018 Sum_probs=67.3
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKG---IRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK-YTYTI 668 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ 668 (729)
...|--=++-|.+..++..|...|.+-++.. ...+.+.|+.-..+-...|++..|+.=....... .|+. ..|.-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--KPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc--Ccchhhhhhh
Confidence 3355556677888888999999998877652 2234566777777777778888888877777664 4443 35544
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 669 LINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
=..++....++++|....++.+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 5566777888888888887765
No 435
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.66 E-value=3.5e+02 Score=26.20 Aligned_cols=233 Identities=15% Similarity=0.156 Sum_probs=107.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHH
Q 004814 388 TLLYGYCRSGNIGEAFLLFDELRS-------RNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ-----GILPDVIT 455 (729)
Q Consensus 388 ~li~~~~~~g~~~~A~~l~~~m~~-------~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~ 455 (729)
.+|..+.+.|++++.+..|.++.. ++ -+....|.+++......+.+.....++.-++. +-..--.|
T Consensus 70 QmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrN--ySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 70 QMIKINFRLGNYKEMMERYKQLLTYIKSAVTRN--YSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 345555556666665555555432 11 12344555555555555554444444332211 00111123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----C-------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCH
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQP----D-------RFAYTTQIAGELKLGDTSEAYRLQEEMLAKG-FPPDL 523 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~----~-------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-~~~~~ 523 (729)
-+.|...|...+.+.+-.++++++....-.- | ...|..-|+.|..+.+-.+-..++++.+... .-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 3445666666677777777777665431110 1 2345555666766666666666676654431 12333
Q ss_pred HHHHHHHHH-----HHhcCCHHHHHHHHHHHH----hCCCCCCHHH---HHHHHHHHHhcC----CHHHHHHHHHHHHHC
Q 004814 524 ITYNVLVHG-----LCKLGSLEEANELLRKMV----GDGFIPDHIT---YTSIIHASLEMG----DLRRGRDLFNNMLRK 587 (729)
Q Consensus 524 ~~~~~li~~-----~~~~g~~~~A~~~~~~~~----~~~~~p~~~~---~~~l~~~~~~~g----~~~~A~~~~~~~~~~ 587 (729)
... ..|+- ..+.|++++|..-|-++. +.|. |...+ |-.+.+.+.+.| +.++|. --
T Consensus 228 lIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs-pRRttCLKYLVLANMLmkS~iNPFDsQEAK-------Py 298 (440)
T KOG1464|consen 228 LIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS-PRRTTCLKYLVLANMLMKSGINPFDSQEAK-------PY 298 (440)
T ss_pred HHH-hHHHHcCCccccccchHHHHHhHHHHHHhcccccCC-cchhHHHHHHHHHHHHHHcCCCCCcccccC-------CC
Confidence 322 22332 345677777754333332 2332 22222 333334444433 111111 01
Q ss_pred CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 588 GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNA 633 (729)
Q Consensus 588 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 633 (729)
.-.|.....+.|+.+|.. ++..+-.+++..-.. .+..|+.+-+.
T Consensus 299 KNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~~~~-~IM~DpFIReh 342 (440)
T KOG1464|consen 299 KNDPEILAMTNLVAAYQN-NDIIEFERILKSNRS-NIMDDPFIREH 342 (440)
T ss_pred CCCHHHHHHHHHHHHHhc-ccHHHHHHHHHhhhc-cccccHHHHHH
Confidence 113555667777777754 345554444443333 24445544333
No 436
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=40.28 E-value=2.4e+02 Score=24.22 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 556 PDHITYTSIIHASLEMG---DLRRGRDLFNNMLRKGLSP-TLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
++..+--.+..++.+.. +.++...+++++.+...+. .......|.-++.+.+++++++++.+.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 34444444555555443 3445566666666422111 1222333444566666666666666666553
No 437
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.08 E-value=1.4e+02 Score=27.55 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 659 ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 659 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
..|++..|..++.++...|+.++|.+..+++. .+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~--~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR--RLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCC
Confidence 35666677776777777777777777766666 4444
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=40.04 E-value=1.7e+02 Score=26.55 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHCCCCCCH--HH-----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 609 LELAFMYFSEMQVKGIRPNV--IT-----YNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~--~~-----~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.+.|+.+|+.+.+.-..|+. .. -...+-.|.+.|.+++|.+++++...
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 56777777777665222211 11 12334456777777777777777665
No 439
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.64 E-value=2.1e+02 Score=28.70 Aligned_cols=98 Identities=8% Similarity=-0.168 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 204 (729)
..|--=++-|.+.++|+.|...|.+.++... .+..++..+|+.=+.+-.-.|++..|+.=..+.+...+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc-----------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P 150 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKC-----------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP 150 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC-----------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3344445556666666666666666555432 12223444444444444455566666666665555543
Q ss_pred CCChHhHHHHHHHHHHCCChhHHHHHHHHH
Q 004814 205 LPDVKNCNRIIKVLRDNGFSVKAREVYRMM 234 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~ 234 (729)
. ...++-.-..++....++++|..+.++.
T Consensus 151 ~-h~Ka~~R~Akc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 151 T-HLKAYIRGAKCLLELERFAEAVNWCEEG 179 (390)
T ss_pred c-hhhhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 3 4444444455555555555555554443
No 440
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.57 E-value=1.7e+02 Score=23.07 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=10.5
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 004814 602 AHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~ 621 (729)
.....|++++|...+++.++
T Consensus 50 ~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 34445555555555555543
No 441
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=39.37 E-value=1.3e+02 Score=20.86 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=15.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004814 634 LINGLCRLRRIDQAYGLFIDMEEEGILPNKY 664 (729)
Q Consensus 634 l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (729)
+.-++.+.|++++|.++.+.+.+. .|+..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEI--EPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--TTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhh--CCCcH
Confidence 344566666666666666666663 44443
No 442
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.20 E-value=2.6e+02 Score=32.03 Aligned_cols=176 Identities=16% Similarity=0.096 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALEL 265 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 265 (729)
+.++++.+.+.+...--| .+++..+.+.|..+-|+.+.+.-. +- ...+..+|+.+.|++.
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~---------tR---F~LaLe~gnle~ale~ 665 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDER---------TR---FELALECGNLEVALEA 665 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcc---------hh---eeeehhcCCHHHHHHH
Confidence 445666655544322211 356777778888877776644321 11 1234567899888876
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 266 LWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 266 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
-.++- |..+|..|+....+.|+.+-|+..|++... |..|--.|.-.|+.++-.++......++
T Consensus 666 akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~-- 728 (1202)
T KOG0292|consen 666 AKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRN-- 728 (1202)
T ss_pred HHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhh--
Confidence 54432 667889999999999999988888887654 3444455667788888777766665542
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 346 PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 346 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
|..+.. .. ..-.|+.++=.++++..-. .+ ..|. .....|.-++|.++.++...
T Consensus 729 -D~~~~~-qn--alYl~dv~ervkIl~n~g~----~~-layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 729 -DATGQF-QN--ALYLGDVKERVKILENGGQ----LP-LAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred -hhHHHH-HH--HHHhccHHHHHHHHHhcCc----cc-HHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 322211 11 1224677766666654322 11 1121 12246667788888877755
No 443
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.31 E-value=1e+02 Score=28.99 Aligned_cols=55 Identities=15% Similarity=0.020 Sum_probs=39.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
..+.++.+.|.+++.++.+. .+-....|-.+...-.+.|+++.|.+-|++..+.+
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 45667777888888887765 22245567777777778888888888888877753
No 444
>PRK09857 putative transposase; Provisional
Probab=38.16 E-value=2.2e+02 Score=28.36 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
..++.-....|+.++-.++++.+.+. .++......+++.-+.+.|.-++++++.++|+..|+.++.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~~ 275 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLAD 275 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 34444344556666666666666554 3334445556677777777777788888888877777653
No 445
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.98 E-value=3.9e+02 Score=27.70 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 559 ITYTSIIHASLEMGDLRRGRDLFNNMLRKG--LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
..+.-+...|..+|+++.|++.+.+...-- .......|..+|..-.-.|+|.....+..++...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356667777888888888888887755431 1122334555555556677788777777777654
No 446
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=37.74 E-value=5.5e+02 Score=27.69 Aligned_cols=96 Identities=18% Similarity=0.145 Sum_probs=44.6
Q ss_pred HHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC
Q 004814 108 LRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS 187 (729)
Q Consensus 108 l~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g 187 (729)
..+........|..-+..+...++.. ..|.+..|...++++.......+....+....... .......++. ..+.+
T Consensus 182 ~~~L~~i~~~egi~i~~eal~~Ia~~--s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~~-~~~~i~~li~-si~~~ 257 (472)
T PRK14962 182 IKRLQEVAEAEGIEIDREALSFIAKR--ASGGLRDALTMLEQVWKFSEGKITLETVHEALGLI-PIEVVRDYIN-AIFNG 257 (472)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCC-CHHHHHHHHH-HHHcC
Confidence 33444443345666666666555543 35777778777776553211111111110000000 1111122222 23556
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q 004814 188 MVEQCLLVFNKMLRNGLLPD 207 (729)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~ 207 (729)
+++.|+..+.++...|..|.
T Consensus 258 d~~~Al~~l~~ll~~Gedp~ 277 (472)
T PRK14962 258 DVKRVFTVLDDVYYSGKDYE 277 (472)
T ss_pred CHHHHHHHHHHHHHcCCCHH
Confidence 67777777777776665443
No 447
>PRK11619 lytic murein transglycosylase; Provisional
Probab=37.42 E-value=6.6e+02 Score=28.46 Aligned_cols=312 Identities=10% Similarity=0.037 Sum_probs=156.3
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHH
Q 004814 218 LRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGV-TYNVLITGFSRNGELEQ 296 (729)
Q Consensus 218 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~ 296 (729)
..+.|++..+.++-..+...-+ .....|..+.... .....++...++++-.. .|-.. .-......+.+.+++..
T Consensus 43 a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~La~~~~w~~ 117 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT---LPPARSLQSRFVNELARREDWRG 117 (644)
T ss_pred HHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC---CchHHHHHHHHHHHHHHccCHHH
Confidence 3455666666666665543211 1111222222211 12245555555544322 22222 22233445556777776
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH--HHHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA--RHRFFEM 374 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~~ 374 (729)
..+.+. . .+.+.........+....|+.++|.+..+.+-..|.. .....+.++..+.+.|.+... .+-+...
T Consensus 118 ~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~w~R~~~a 191 (644)
T PRK11619 118 LLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAYLERIRLA 191 (644)
T ss_pred HHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 665221 1 2445555566777888889988887777777665543 456677778777777665433 2223333
Q ss_pred HHCCCCCCHhHHHHHHHHHHH------------cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH--HhcCCHHHHHHH
Q 004814 375 LRKNVIPDIISYNTLLYGYCR------------SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGL--CRYGDLEVAQQL 440 (729)
Q Consensus 375 ~~~~~~~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~ 440 (729)
...| +...-..+...+.. ..+...+..++. .+.++...-..++.++ ....+.+.|..+
T Consensus 192 l~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~ 263 (644)
T PRK11619 192 MKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQDAENARLM 263 (644)
T ss_pred HHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhCHHHHHHH
Confidence 3332 22222222221100 001111111111 1112221111111122 234566888888
Q ss_pred HHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 441 KENMINQG-ILPD--VITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK 517 (729)
Q Consensus 441 ~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 517 (729)
+....... ..+. ..++..+.......+..++|...+....... .+......-+..-...++++.+...+..|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~ 341 (644)
T PRK11619 264 IPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPME 341 (644)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHh
Confidence 88775443 2222 2233444433344433566666666554332 23444444455556888998888888877543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 518 GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVG 551 (729)
Q Consensus 518 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 551 (729)
. ........-+..++...|+.++|...|+++..
T Consensus 342 ~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 342 A-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred h-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2 23445556677887778999999999988743
No 448
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.22 E-value=7.1e+02 Score=28.83 Aligned_cols=100 Identities=13% Similarity=0.143 Sum_probs=61.8
Q ss_pred HHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHH---------------hcCCHHHHHHHHHHHHHcCCCCC
Q 004814 604 AARGRLELAFMYFSEMQVK------GIRPNVITYNALINGLC---------------RLRRIDQAYGLFIDMEEEGILPN 662 (729)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~------g~~p~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~m~~~g~~p~ 662 (729)
...|++.+|++.|...+-. .-+-+..-...++..++ ..+..+++.++-.-.....+.|-
T Consensus 1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence 4679999999999987643 11112222333443331 12344555444444444445554
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 663 KY--TYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSA 703 (729)
Q Consensus 663 ~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ 703 (729)
.. +..+.++.+.+.+++..|-.+-.++++.+..|+...-..
T Consensus 1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~r 1124 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQAR 1124 (1202)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 43 456778899999999999999999997777766544333
No 449
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=36.80 E-value=4.3e+02 Score=26.11 Aligned_cols=114 Identities=12% Similarity=0.091 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 004814 329 LVEALNLEEEMVT-RGVAPTLATYNILIYGLCK-WGR-VSDARHRFFEMLR-KNVIPDIISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 329 ~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~-~g~-~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 404 (729)
+.+|+++|+.... ..+--|..+...+++.... .+. ...-.++.+-+.. .+..++..+....+..+++.+++.+-++
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 3455555552211 1133355555555555554 222 1111222222322 2344677777788888888888888888
Q ss_pred HHHHHhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 405 LFDELRSR-NLVPTVVTYNTLIDGLCRYGDLEVAQQLKE 442 (729)
Q Consensus 405 l~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 442 (729)
+++..... +...|...|..+|+.....|+..-...+.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 88776554 455677788888888888888766655544
No 450
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.77 E-value=2.4e+02 Score=25.67 Aligned_cols=64 Identities=8% Similarity=0.028 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHHCCCCCC--hhh-----HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPT--LVT-----YTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLC 639 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~--~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 639 (729)
-++.|+.+|+.+.+.--.|. ... -...+-.|.+.|.+++|.+++++..+. |+......-+....
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II 154 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMII 154 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHH
Confidence 37889999998887632221 111 122345688999999999999998873 45444333333333
No 451
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=36.30 E-value=3.8e+02 Score=26.63 Aligned_cols=43 Identities=12% Similarity=0.164 Sum_probs=23.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
++|+.+.++++.|.-..+..+.-.+.+.=.+.+.+.+|+.+..
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 4455555555555555555555555555555555555555543
No 452
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=36.03 E-value=2.6e+02 Score=23.57 Aligned_cols=45 Identities=18% Similarity=0.208 Sum_probs=24.6
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 578 RDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
.+-++.+....+.|++.+...-+.++.+-+++..|.++|+-...+
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 333444444455555555555566666666666666666555443
No 453
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=35.71 E-value=4.6e+02 Score=26.20 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 004814 253 FCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~ 271 (729)
..+.|+..+|.+.|+.+.+
T Consensus 285 ARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 285 ARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHHhhhHHHHHHHHHHHhh
Confidence 3345555555555555443
No 454
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.68 E-value=6.9e+02 Score=28.23 Aligned_cols=97 Identities=12% Similarity=0.142 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH
Q 004814 105 RIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT 184 (729)
Q Consensus 105 ~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 184 (729)
+.....+..+..+.|...+......++. ...|.+..|+.++++++......+....+..... ..+......++..+.
T Consensus 186 eei~~~L~~Il~~Egi~~d~eAL~~IA~--~A~Gs~RdALsLLdQaia~~~~~It~~~V~~~LG-~~d~~~i~~Ll~aL~ 262 (700)
T PRK12323 186 GHIVSHLDAILGEEGIAHEVNALRLLAQ--AAQGSMRDALSLTDQAIAYSAGNVSEEAVRGMLG-AIDQSYLVRLLDALA 262 (700)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 3444444444445566777666555543 3578888898888876653322111111100000 012223334444333
Q ss_pred cCCCHHHHHHHHHHHHHCCCC
Q 004814 185 KKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.++..+++.+.+++.+.|..
T Consensus 263 -~~d~~~~l~l~~~l~~~G~d 282 (700)
T PRK12323 263 -AEDGAALLAIADEMAGRSLS 282 (700)
T ss_pred -cCCHHHHHHHHHHHHHcCCC
Confidence 56667777777777666643
No 455
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.46 E-value=8.6e+02 Score=29.25 Aligned_cols=123 Identities=14% Similarity=0.086 Sum_probs=72.3
Q ss_pred HHHhcCChhhHHHHHHHHHhccchh-hhHHHhhc------------CCCCcch-HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 004814 133 ILIESGLLRSAYWVVETVVCVNMHG-ILDVLIGG------------GLSSCVS-IKILDLLLLIYTKKSMVEQCLLVFNK 198 (729)
Q Consensus 133 ~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~l~~~------------~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 198 (729)
+|...|...+|...|.++..-...+ .++.++.. ..+.+.. ...|...++.+-+.+-.+.+.++...
T Consensus 929 ~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~ 1008 (1480)
T KOG4521|consen 929 AYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVK 1008 (1480)
T ss_pred eeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3556777778888777776543221 22222211 1122222 56688889999999999999999888
Q ss_pred HHHCCCC--CCh-HhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCCHHH
Q 004814 199 MLRNGLL--PDV-KNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV----TYNTMLDSFCKEGEMQE 261 (729)
Q Consensus 199 ~~~~~~~--~~~-~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~ 261 (729)
+++.-.. |.. ..++.+.+.....|.+.+|.... .. .||.. ....++-.++.+|+.+.
T Consensus 1009 AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1009 AIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHHHHHHHHhccchHH
Confidence 8874322 222 23556667777777776665443 22 24433 34455666666666543
No 456
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=34.70 E-value=4.7e+02 Score=25.97 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhcCCHHHH
Q 004814 523 LITYNVLVHGLCKLGSLEEA 542 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A 542 (729)
...|..|+.+++..|+.+-.
T Consensus 321 lK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHhhhHHHHHHhcCChHHHH
Confidence 34566777777777766543
No 457
>PRK12798 chemotaxis protein; Reviewed
Probab=34.34 E-value=5.6e+02 Score=26.78 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHH
Q 004814 466 MGNLSMAREFFNEMLRKGLQPDRFAYTTQIAG-ELKLGDTSEAYRLQEEMLAKGFPPD----LITYNVLVHGLCKLGSLE 540 (729)
Q Consensus 466 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~l~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~ 540 (729)
.|+..++.+.+..+......+....+..++.+ .....+..+|+++|+...-. .|. ......-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 56666666666655554444444445554433 33445566666666654332 122 122233333444555555
Q ss_pred HHHHHHHHH
Q 004814 541 EANELLRKM 549 (729)
Q Consensus 541 ~A~~~~~~~ 549 (729)
++..+-.+-
T Consensus 203 rf~~la~~Y 211 (421)
T PRK12798 203 KFEALARNY 211 (421)
T ss_pred HHHHHHHHH
Confidence 554444433
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=34.30 E-value=84 Score=23.70 Aligned_cols=17 Identities=41% Similarity=0.735 Sum_probs=10.7
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004814 675 NAGNWQEALRLYKEMLD 691 (729)
Q Consensus 675 ~~g~~~~A~~~~~~m~~ 691 (729)
..|++++|+++|...++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 45666666666666653
No 459
>PF06855 DUF1250: Protein of unknown function (DUF1250); InterPro: IPR023089 This entry represents the YozE-like domain found in a group of proteins of unknown function.; PDB: 2KVS_A 2FJ6_A 2O6K_B.
Probab=33.94 E-value=56 Score=21.83 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=32.2
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004814 110 FFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVC 152 (729)
Q Consensus 110 ~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 152 (729)
|.+|+.....||.....+..+..=+-.++....++..++++++
T Consensus 1 lA~~i~~D~~FPK~~~~~~eI~~Yle~~~~~~~~~~~fd~aw~ 43 (46)
T PF06855_consen 1 LANDIFQDHSFPKQETDFDEISSYLESNYDYLESMEIFDRAWS 43 (46)
T ss_dssp HHHHHHTSTTS-TT-SSHHHHHHHHHCHCCHHCCHHHHHHHHH
T ss_pred ChhhhhhCcCCCCCCCCHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 3467777788899999999988888878888788888877654
No 460
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=33.91 E-value=1.4e+02 Score=20.04 Aligned_cols=23 Identities=4% Similarity=0.293 Sum_probs=9.4
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCh
Q 004814 186 KSMVEQCLLVFNKMLRNGLLPDV 208 (729)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~ 208 (729)
.|..+++...+++|.+.|+..+.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~ 37 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISP 37 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCH
Confidence 33444444444444444443333
No 461
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=33.71 E-value=8.8e+02 Score=28.86 Aligned_cols=247 Identities=15% Similarity=0.101 Sum_probs=149.0
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 381 PDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMV 460 (729)
Q Consensus 381 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 460 (729)
+|..+-...+..+.+.+.. ++...+.++... ++...-...+.++.+.+........+..+++. +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 7777777777777777753 455555555543 34444445555555443222222334444443 4666666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 461 NGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLE 540 (729)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 540 (729)
..+...+..+ .. .+-.+++ .+|...-...+.++.+.+..+. +..... .++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L~---D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAALG---DPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHhc---CCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 7666544221 12 2333333 3566666677777776665432 222222 456777777778888777544
Q ss_pred H-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 541 E-ANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 541 ~-A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
. +...+..+.+ .+|...-...+.++...|..+.+...+..+++. ++..+-...+.++...+. .++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d---~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRA---SAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC---CChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 3 3455556654 357778888888888888876665555555543 566667777788877775 4566777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 620 QVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 620 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
.+ .|+...-...+.++.+.+.-..+...+..+.+
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 65 36766667777777775434567777777776
No 462
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=33.38 E-value=2.7e+02 Score=22.78 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhh
Q 004814 386 YNTLLYGYCRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 386 ~~~li~~~~~~g~~~~A~~l~~~m~~ 411 (729)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 66677777777777777777776655
No 463
>PRK09857 putative transposase; Provisional
Probab=33.17 E-value=3.6e+02 Score=26.83 Aligned_cols=64 Identities=13% Similarity=0.234 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccC
Q 004814 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVS 312 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 312 (729)
.+++-..+.|+.++..++++.+.+. .++......++..-+.+.|.-+++.++..+|+..|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333334445555455555544443 222333334455555555555566666666666665433
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.18 E-value=91 Score=30.73 Aligned_cols=32 Identities=28% Similarity=0.473 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSP 276 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 276 (729)
-|+.-|....+.||+++|++++++.++.|..-
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 34567777777777777777777777776543
No 465
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.99 E-value=89 Score=30.81 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=16.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 631 YNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 631 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
|+..|..-.+.|++++|+++++++.+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555555555555555555543
No 466
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.58 E-value=1.9e+02 Score=20.76 Aligned_cols=17 Identities=12% Similarity=0.489 Sum_probs=8.1
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004814 570 EMGDLRRGRDLFNNMLR 586 (729)
Q Consensus 570 ~~g~~~~A~~~~~~~~~ 586 (729)
..|++-+|-++++.+-.
T Consensus 11 n~g~f~EaHEvlE~~W~ 27 (62)
T PF03745_consen 11 NAGDFFEAHEVLEELWK 27 (62)
T ss_dssp HTT-HHHHHHHHHHHCC
T ss_pred cCCCHHHhHHHHHHHHH
Confidence 34555555555555543
No 467
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.40 E-value=4.8e+02 Score=25.07 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 633 ALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 633 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
.+..++...|++-++++.-.+..... +-|...|..-..+.+..=+..+|..-|.+.+ .+.|.
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL--~ldps 296 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVL--ELDPS 296 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHH--hcChh
Confidence 33445555666667777666666652 4455566666666666667777777777776 44553
No 468
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=31.15 E-value=6.6e+02 Score=30.50 Aligned_cols=151 Identities=21% Similarity=0.258 Sum_probs=80.8
Q ss_pred HhcCCHHHHHH------HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCHHHHHHHH
Q 004814 499 LKLGDTSEAYR------LQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMV-------GDGFIPDHITYTSII 565 (729)
Q Consensus 499 ~~~g~~~~A~~------l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~p~~~~~~~l~ 565 (729)
...|.+.+|.+ ++......-.+.....|..+...+.+.|+.++|...-.+.. .....-+...|..+.
T Consensus 943 ~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla 1022 (1236)
T KOG1839|consen 943 LLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA 1022 (1236)
T ss_pred hcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH
Confidence 34455555555 55533333335556677777777888888888776654432 111122333455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC-----C--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC--CCCHHHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRK-----G--LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-----GI--RPNVITY 631 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~--~p~~~~~ 631 (729)
..+...+....|...+...... | .||...+.+.+-..+...++++.|.++++.+... |. -.+..++
T Consensus 1023 l~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~ 1102 (1236)
T KOG1839|consen 1023 LYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSY 1102 (1236)
T ss_pred HHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHH
Confidence 5555666666666666655432 1 2333334444444444457778888887777653 21 1133445
Q ss_pred HHHHHHHHhcCCHHHHHH
Q 004814 632 NALINGLCRLRRIDQAYG 649 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~ 649 (729)
..+...+...+++..|..
T Consensus 1103 ~~~a~l~~s~~dfr~al~ 1120 (1236)
T KOG1839|consen 1103 HALARLFESMKDFRNALE 1120 (1236)
T ss_pred HHHHHHHhhhHHHHHHHH
Confidence 555555555555544433
No 469
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=31.08 E-value=2.7e+02 Score=24.24 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=10.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGI 624 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~ 624 (729)
+..+...++.-.|.++++++.+.+.
T Consensus 27 l~~L~~~~~~~sAeei~~~l~~~~p 51 (145)
T COG0735 27 LELLLEADGHLSAEELYEELREEGP 51 (145)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCC
Confidence 3334444333444444444444433
No 470
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.91 E-value=6.6e+02 Score=26.52 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCC
Q 004814 397 GNIGEAFLLFDELRSRNLVPT 417 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~ 417 (729)
++.+.|+..+..|.+.|..|.
T Consensus 244 sd~~aal~~l~~~l~~G~d~~ 264 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPL 264 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 455555555555555554443
No 471
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=30.55 E-value=8.9e+02 Score=27.94 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=16.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 004814 249 MLDSFCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~ 271 (729)
++--+.++|+.+.|.+++.+...
T Consensus 331 ~vyy~lR~G~lk~A~~~l~e~~~ 353 (835)
T KOG2168|consen 331 LVYYLLRCGDLKAASQFLNENKD 353 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhh
Confidence 44556677888888888777654
No 472
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.37 E-value=1.1e+02 Score=17.51 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 004814 644 IDQAYGLFIDMEE 656 (729)
Q Consensus 644 ~~~A~~~~~~m~~ 656 (729)
.+.|..+|++++.
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.30 E-value=2.9e+02 Score=22.15 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=29.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004814 612 AFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667 (729)
Q Consensus 612 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 667 (729)
-.+.+++...++....+-....|.-.|.+.|+-+.|.+-|+.=.. +.|...+|.
T Consensus 56 le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fm 109 (121)
T COG4259 56 LEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFM 109 (121)
T ss_pred HHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHH
Confidence 344555555443332333344566667777777777777765544 455555554
No 474
>PHA03100 ankyrin repeat protein; Provisional
Probab=30.07 E-value=7.2e+02 Score=26.69 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=6.3
Q ss_pred HHHHHHHCCCCCC
Q 004814 195 VFNKMLRNGLLPD 207 (729)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (729)
+++.+++.|..++
T Consensus 50 ivk~Ll~~g~~~~ 62 (480)
T PHA03100 50 VVKILLDNGADIN 62 (480)
T ss_pred HHHHHHHcCCCCC
Confidence 3444445555444
No 475
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=30.01 E-value=4.9e+02 Score=24.80 Aligned_cols=36 Identities=19% Similarity=0.385 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004814 626 PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN 662 (729)
Q Consensus 626 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (729)
|.+.....++..| ..+++++|.+.+.++-+.|+.|.
T Consensus 237 PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 237 PHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred CChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHH
Confidence 4444444444433 33466666666666666665543
No 476
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=29.79 E-value=9.1e+02 Score=27.81 Aligned_cols=165 Identities=14% Similarity=0.065 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcC
Q 004814 503 DTSEAYRLQEEMLA--------KGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFI--PDHITYTSIIHASLEMG 572 (729)
Q Consensus 503 ~~~~A~~l~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g 572 (729)
+.++...+++.... .++..+..+...++... .|+..+++.+++.+...... .+... =
T Consensus 169 s~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------I 235 (725)
T PRK13341 169 SDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------I 235 (725)
T ss_pred CHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------c
Confidence 34666666666554 23445566666655543 78888888888776532100 00000 0
Q ss_pred CHHHHHHHHHHHH---H-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----
Q 004814 573 DLRRGRDLFNNML---R-KGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI---- 644 (729)
Q Consensus 573 ~~~~A~~~~~~~~---~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~---- 644 (729)
..+.+.+.+.+.. . .| .+...+...++. ..+.++++.|+..+.+|.+.|..|....-..++.+....|.-
T Consensus 236 t~~~~~e~l~~~~~~ydk~g-d~hyd~Isa~~k-sirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~a 313 (725)
T PRK13341 236 TLAIAEESIQQRAVLYDKEG-DAHFDTISAFIK-SLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQA 313 (725)
T ss_pred cHHHHHHHHHHhhhhcccCC-CCCHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHH
Confidence 1122333332211 1 11 122222222332 235688999999999999998877655545555555445542
Q ss_pred -HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 645 -DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 645 -~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
.-|...++.....|++--........-.++.+-+-..+
T Consensus 314 l~~~~~~~~a~~~~g~pE~~~~laq~~~~la~apKSns~ 352 (725)
T PRK13341 314 LVVVEACAAAFERVGLPEGLYPLAQAALYLATAPKSNSV 352 (725)
T ss_pred HHHHHHHHHHHHHhCCcchhhHHHHHHHHHHcCCCccHH
Confidence 22444444555567655444544444444544444444
No 477
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.51 E-value=5.1e+02 Score=26.31 Aligned_cols=51 Identities=14% Similarity=0.311 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 645 DQAYGLFIDMEEEGILPNK----YTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
++....+.+++.. -|+. ..|..++......|.+++.+.+|++++..|..|-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPi 174 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPI 174 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChH
Confidence 3445555555442 2332 2455555666666666666666666666666653
No 478
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.25 E-value=6.4e+02 Score=27.21 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 004814 106 IALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVC 152 (729)
Q Consensus 106 ~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~ 152 (729)
........+....|..-+..+...++. ...|.+..|+.++++++.
T Consensus 184 ~i~~~L~~i~~~Egi~~e~eAL~~Ia~--~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 184 VLQDYSEKLCKIENVQYDQEGLFWIAK--KGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCChHHHHHHHHHHHHH
Confidence 334555555555677777777666653 446888888888887664
No 479
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=28.78 E-value=7.1e+02 Score=26.24 Aligned_cols=74 Identities=12% Similarity=0.088 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 004814 597 TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCN 675 (729)
Q Consensus 597 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 675 (729)
..|+.-|.-.|+..+|.++++++--- +--....+.+++.+..+.|+-...+.++++.-..| ..|-+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 45677788889999999888776431 11145578888888888888777777777776655 2344444444433
No 480
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.32 E-value=2.4e+02 Score=27.22 Aligned_cols=19 Identities=11% Similarity=0.072 Sum_probs=8.8
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 004814 601 HAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 601 ~~~~~~g~~~~A~~~~~~~ 619 (729)
.-|.+.|++++|.++|+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444
No 481
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.00 E-value=2.1e+02 Score=20.84 Aligned_cols=33 Identities=12% Similarity=-0.054 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNV 379 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 379 (729)
....++.++...++..-.++++..+.+...+|.
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~ 39 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS 39 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 334444444444444444555555555444443
No 482
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=27.66 E-value=6e+02 Score=25.03 Aligned_cols=97 Identities=11% Similarity=0.154 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh---
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVG----DGFIPDHITY-TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLV--- 594 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--- 594 (729)
..++..+..-|++.++.+.+.++.++..+ .|.+.|...- ..+.-.|....-.++-++..+.|.++|..-+..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44555666667776666666665554433 3443333211 112222333333556666666666665432221
Q ss_pred -hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 595 -TYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 595 -~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
+|-.+. +....++.+|-.++.....
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence 222211 2233456666666655543
No 483
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=27.57 E-value=7e+02 Score=30.27 Aligned_cols=157 Identities=20% Similarity=0.136 Sum_probs=97.8
Q ss_pred HHHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCChhhHHH
Q 004814 532 GLCKLGSLEEANE------LLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNML-------RKGLSPTLVTYTV 598 (729)
Q Consensus 532 ~~~~~g~~~~A~~------~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~ 598 (729)
.....|.+.+|.+ ++......-..+....|..+...+.+.|+.++|...-.+.. ....+.+...|..
T Consensus 941 ~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~n 1020 (1236)
T KOG1839|consen 941 EALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGN 1020 (1236)
T ss_pred hhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhH
Confidence 3344556666655 55533333234455678888889999999999988765432 2222234455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC--CCCHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVK-----GI-RPN-VITYNALINGLCRLRRIDQAYGLFIDMEEE-----GI--LPNKY 664 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~--~p~~~ 664 (729)
+.-.....+....|...+.+.... |. .|. ..+++.+-..+...++++.|+++.+.+... |. -+...
T Consensus 1021 lal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~ 1100 (1236)
T KOG1839|consen 1021 LALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETAL 1100 (1236)
T ss_pred HHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhh
Confidence 665666677888888888777653 22 333 444555555555668999999999988762 21 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
++..+.+.....|++..|....+.
T Consensus 1101 ~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1101 SYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhh
Confidence 666777777777777766555444
No 484
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=26.69 E-value=6.4e+02 Score=25.04 Aligned_cols=53 Identities=23% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 213 RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 213 ~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (729)
.++....+.++.....+.+..+.. ...-...++.+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 344445555555555555544432 22334455666677777777777766554
No 485
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=26.44 E-value=9.2e+02 Score=27.50 Aligned_cols=94 Identities=13% Similarity=-0.037 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHH
Q 004814 608 RLELAFMYFSEMQVK-GIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILP-------------NKYTYTILINEN 673 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-------------~~~~~~~l~~~~ 673 (729)
..++....+.+..+. |+..+......++... .|++..|+.+++++...|-.. +......++.++
T Consensus 179 s~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 179 TAQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred CHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 674 CNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 674 ~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
.. |+..+++.+++++...|..+....-..+
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~~~~l~~L~ 286 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGFDNALGELA 286 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHHHHHHHHH
No 486
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=26.41 E-value=5.2e+02 Score=23.83 Aligned_cols=15 Identities=13% Similarity=0.304 Sum_probs=6.8
Q ss_pred hcCCHHHHHHHHHHH
Q 004814 360 KWGRVSDARHRFFEM 374 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~ 374 (729)
..|++++|.+-++++
T Consensus 41 H~~~~eeA~~~l~~a 55 (204)
T COG2178 41 HRGDFEEAEKKLKKA 55 (204)
T ss_pred HhccHHHHHHHHHHH
Confidence 344455444444443
No 487
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=26.16 E-value=1.4e+02 Score=18.96 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=20.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
+|..|+.+-...+++++|..=|.+.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 567777777888888888887777664
No 488
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.14 E-value=4e+02 Score=22.48 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHCCCCCCh-HhHHHHHHHHHHCCChhHHHHHHHH
Q 004814 191 QCLLVFNKMLRNGLLPDV-KNCNRIIKVLRDNGFSVKAREVYRM 233 (729)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~-~~~~~ll~~l~~~g~~~~A~~~~~~ 233 (729)
++.++|..|...|+-... .-|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 777777777776654333 3355666667777777777777664
No 489
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.91 E-value=5.7e+02 Score=24.20 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=10.2
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004814 566 HASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~ 585 (729)
......|++++|.+....+.
T Consensus 72 r~~I~~G~Ie~Aie~in~l~ 91 (228)
T KOG2659|consen 72 RRAIEEGQIEEAIEKVNQLN 91 (228)
T ss_pred HHHHHhccHHHHHHHHHHhC
Confidence 33455555555555555443
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.86 E-value=3.3e+02 Score=26.29 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 349 ATYNILIYGLCKWGRVSDARHRFFEM 374 (729)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~~ 374 (729)
.+...+..++.+.|+.++...+.-++
T Consensus 219 ~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 219 EVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33444555555666665555554443
No 491
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=25.75 E-value=2e+02 Score=30.06 Aligned_cols=111 Identities=9% Similarity=-0.055 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHH---
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKM--- 199 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--- 199 (729)
+..+--.+++.|....+..+-....... .++..+.+......+..-.--.....|+++++-.|++..|+++++.+
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~--~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~ 151 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRG--EDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLN 151 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhcc--CCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcc
Q ss_pred ----HHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 200 ----LRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 200 ----~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
...-+...+.++..+.=+|.-.+++.+|.+.|....
T Consensus 152 ~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 152 KKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred cchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=25.40 E-value=7.2e+02 Score=25.30 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGL 638 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 638 (729)
-|.+++......|.++.++.+|++++..|..|-...-..+++.+
T Consensus 142 YWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 142 YWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34455555555555555555555555555555444444444433
No 493
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=25.38 E-value=3.7e+02 Score=29.74 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=60.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCChhhHHHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDG--FIPDHITYTSIIHASLEMGDLR------RGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
++..+|...|++-++.++++...... -+.-...+|..++...+.|.++ .|.+++++.. +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887642 2223457888888888888753 4555555554 34477888887
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 004814 600 IHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
+.+-..--+-.-..-++.+.+.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 7765543333333334444443
No 494
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=25.11 E-value=1.6e+02 Score=21.42 Aligned_cols=25 Identities=16% Similarity=0.424 Sum_probs=9.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
+...+++..-.++++..+.++.+.|
T Consensus 14 l~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 14 LYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333333344444443333
No 495
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.00 E-value=1e+03 Score=26.78 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=48.5
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH
Q 004814 105 RIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT 184 (729)
Q Consensus 105 ~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 184 (729)
+....++.+.....|+..+..+...++. ...|.+..|..++++++..+...+....+...+.. .+......++....
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~-~~~~~i~~LldaL~ 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGS-VDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 3344455554455677777777666665 34588888888887766443211111111000000 11222222333332
Q ss_pred cCCCHHHHHHHHHHHHHCCCC
Q 004814 185 KKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.|+...++.+++++.+.|..
T Consensus 263 -~~d~~~al~~l~~l~~~G~~ 282 (618)
T PRK14951 263 -QGDGRTVVETADELRLNGLS 282 (618)
T ss_pred -cCCHHHHHHHHHHHHHcCCC
Confidence 35666666666666666544
No 496
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=24.93 E-value=2.6e+02 Score=26.44 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=47.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
...+.++.+.|.+++.+....- +.....|-.+...-.+.|+.+.|.+-|++..+.
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 4567889999999999998863 556788999999999999999999999999985
No 497
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=24.91 E-value=4.7e+02 Score=22.82 Aligned_cols=97 Identities=12% Similarity=0.082 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCChHh--HHHHHHHHHHCCChhHHHHHHHHHHhCCC-----CCChhhHHHHHHHHHhcCC-HHHHHHH
Q 004814 194 LVFNKMLRNGLLPDVKN--CNRIIKVLRDNGFSVKAREVYRMMGEFGI-----KPSIVTYNTMLDSFCKEGE-MQEALEL 265 (729)
Q Consensus 194 ~~~~~~~~~~~~~~~~~--~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~ 265 (729)
+...-|.+.+..++..+ .|.++..+...+++.-.+.+++.+..... ..+...|.+++.+..+..- --.+..+
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTL 102 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHH
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 266 LWEMQGRGCSPNGVTYNVLITGFSR 290 (729)
Q Consensus 266 ~~~m~~~~~~p~~~~~~~li~~~~~ 290 (729)
|.-|++.+.+.+..-|..++.++.+
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc
No 498
>PRK12798 chemotaxis protein; Reviewed
Probab=24.88 E-value=8.2e+02 Score=25.65 Aligned_cols=195 Identities=15% Similarity=0.058 Sum_probs=112.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCH
Q 004814 500 KLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLC-KLGSLEEANELLRKMVGDGFIPDH----ITYTSIIHASLEMGDL 574 (729)
Q Consensus 500 ~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~ 574 (729)
-.|+.+++.+.+..+.....++....|-.|+.+-. ...++.+|+++|+...-. .|-. .....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 46888888888888877777777788887777644 355788899998877653 2332 2344445556778888
Q ss_pred HHHHHHHHHHHHC-CCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 575 RRGRDLFNNMLRK-GLSPTLV-TYTVLIHAHAARGRLELAFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 575 ~~A~~~~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~ 650 (729)
+++..+-.+.... ...|-.. .+..+..++.+.++-..- .-+..+... +.| -...|..+...-.-.|+.+-|...
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 8877776655543 1122222 233333344444322211 223333332 222 345777777777888888888877
Q ss_pred HHHHHHcCCCCCHH-HHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 651 FIDMEEEGILPNKY-TYTILIN--ENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 651 ~~~m~~~g~~p~~~-~~~~l~~--~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
-++.....-..+.. .-..|-. +..-..+.++|.+.+..+-...+.|..
T Consensus 280 s~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 280 SERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
Confidence 77777642111111 1111111 112355677777777776555555543
No 499
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=24.83 E-value=4.3e+02 Score=22.36 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHH
Q 004814 645 DQAYGLFIDMEEEGILPNKY-TYTILINENCNAGNWQEALRLYK 687 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~ 687 (729)
++..++|..|..+|+-.... .|......+...|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34566677777766554433 45566666667777777777765
No 500
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=24.50 E-value=3.6e+02 Score=23.48 Aligned_cols=32 Identities=9% Similarity=-0.033 Sum_probs=15.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH
Q 004814 354 LIYGLCKWGRVSDARHRFFEMLRKNVIPDIIS 385 (729)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 385 (729)
++..+.+.++.-.|.++++++.+.++..+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 44444444444555555555555544343333
Done!