Query 004814
Match_columns 729
No_of_seqs 850 out of 4170
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 06:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 5.4E-42 1.8E-46 383.4 42.1 489 207-710 83-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.6E-40 5.4E-45 371.5 43.8 488 172-673 83-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 8.3E-28 2.8E-32 252.9 46.2 379 285-710 6-384 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-27 4.8E-32 251.2 47.4 379 183-572 9-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 3.1E-29 1.1E-33 268.0 24.3 204 227-430 9-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5.1E-33 262.8 25.7 206 261-466 8-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.8E-24 6.3E-29 236.4 40.2 456 208-701 6-485 (514)
8 2gw1_A Mitochondrial precursor 99.9 5.2E-24 1.8E-28 232.8 40.2 449 173-657 6-478 (514)
9 3fp2_A TPR repeat-containing p 99.9 7.5E-23 2.6E-27 225.0 39.1 442 172-657 24-491 (537)
10 3fp2_A TPR repeat-containing p 99.9 6.9E-23 2.4E-27 225.3 37.7 437 208-697 25-494 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.2E-22 7.5E-27 216.0 39.6 316 121-460 23-370 (450)
12 2y4t_A DNAJ homolog subfamily 99.9 5.2E-22 1.8E-26 213.0 40.9 330 190-552 9-358 (450)
13 2xm6_A Protein corresponding t 99.9 5.5E-18 1.9E-22 183.5 53.5 355 277-692 38-432 (490)
14 3ieg_A DNAJ homolog subfamily 99.9 3.2E-19 1.1E-23 184.7 41.0 331 347-709 2-350 (359)
15 3ieg_A DNAJ homolog subfamily 99.9 3.3E-19 1.1E-23 184.5 39.4 314 124-482 3-335 (359)
16 2xm6_A Protein corresponding t 99.9 6.5E-18 2.2E-22 183.0 50.3 371 225-658 24-433 (490)
17 1xi4_A Clathrin heavy chain; a 99.9 6.9E-16 2.3E-20 174.1 60.3 377 212-648 989-1375(1630)
18 3hym_B Cell division cycle pro 99.9 5.7E-19 1.9E-23 180.5 32.2 294 416-717 20-323 (330)
19 2ooe_A Cleavage stimulation fa 99.9 1.8E-17 6.2E-22 181.4 45.2 420 172-622 12-492 (530)
20 1xi4_A Clathrin heavy chain; a 99.9 3E-15 1E-19 169.0 62.9 444 89-607 952-1415(1630)
21 2ooe_A Cleavage stimulation fa 99.8 6.4E-17 2.2E-21 177.0 45.9 431 196-657 2-492 (530)
22 3hym_B Cell division cycle pro 99.8 2.5E-18 8.6E-23 175.7 31.5 287 121-428 19-314 (330)
23 1fch_A Peroxisomal targeting s 99.8 2.5E-18 8.7E-23 178.8 25.7 304 184-512 36-354 (368)
24 1fch_A Peroxisomal targeting s 99.8 6.7E-18 2.3E-22 175.6 27.7 263 421-690 67-357 (368)
25 4eqf_A PEX5-related protein; a 99.8 1.2E-17 4E-22 173.6 23.9 266 123-407 64-351 (365)
26 4eqf_A PEX5-related protein; a 99.8 3.6E-17 1.2E-21 170.0 26.4 275 384-689 66-353 (365)
27 1b89_A Protein (clathrin heavy 99.8 3.1E-17 1.1E-21 166.7 24.0 378 220-688 15-413 (449)
28 1b89_A Protein (clathrin heavy 99.8 1.4E-16 4.8E-21 161.9 28.6 221 174-430 33-253 (449)
29 3cv0_A Peroxisome targeting si 99.8 6.4E-17 2.2E-21 164.9 26.4 265 124-408 21-311 (327)
30 4g1t_A Interferon-induced prot 99.8 1.2E-15 4E-20 164.5 36.3 298 328-658 153-460 (472)
31 3cv0_A Peroxisome targeting si 99.8 1.6E-16 5.6E-21 161.9 26.9 279 384-690 22-313 (327)
32 4g1t_A Interferon-induced prot 99.8 1.2E-15 4.2E-20 164.4 35.0 395 121-554 48-461 (472)
33 3mkr_A Coatomer subunit epsilo 99.8 2.9E-16 9.9E-21 156.6 26.9 268 429-716 10-282 (291)
34 3mkr_A Coatomer subunit epsilo 99.7 1.3E-15 4.5E-20 151.8 27.8 275 392-685 8-287 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.7 1.7E-17 5.7E-22 181.6 12.7 119 242-360 126-248 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-17 4.5E-22 182.4 9.9 153 206-363 125-287 (1134)
37 3e4b_A ALGK; tetratricopeptide 99.7 3E-15 1E-19 159.4 26.1 346 179-553 9-388 (452)
38 3uq3_A Heat shock protein STI1 99.7 8.1E-15 2.8E-19 143.6 26.0 240 454-707 6-255 (258)
39 2pl2_A Hypothetical conserved 99.7 3.1E-15 1.1E-19 142.3 20.3 199 121-339 2-211 (217)
40 3e4b_A ALGK; tetratricopeptide 99.7 7.2E-15 2.5E-19 156.5 24.8 378 214-656 9-420 (452)
41 2pl2_A Hypothetical conserved 99.6 1.6E-14 5.5E-19 137.4 22.2 197 488-690 5-212 (217)
42 2h6f_A Protein farnesyltransfe 99.6 5E-14 1.7E-18 145.2 26.7 249 123-393 96-363 (382)
43 3uq3_A Heat shock protein STI1 99.6 4.8E-14 1.6E-18 138.0 24.8 225 173-411 5-235 (258)
44 3u4t_A TPR repeat-containing p 99.6 4E-14 1.4E-18 140.0 22.8 248 456-709 6-265 (272)
45 2h6f_A Protein farnesyltransfe 99.6 8.5E-14 2.9E-18 143.4 25.5 250 453-711 97-365 (382)
46 1ouv_A Conserved hypothetical 99.6 1.2E-12 4.1E-17 129.4 32.2 222 452-691 5-250 (273)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.7E-14 9.4E-19 141.4 20.0 251 135-406 16-269 (275)
48 4e6h_A MRNA 3'-END-processing 99.6 1.7E-11 5.7E-16 134.8 43.6 454 189-671 48-582 (679)
49 3u4t_A TPR repeat-containing p 99.6 1E-13 3.6E-18 137.0 23.6 228 179-412 9-250 (272)
50 1ouv_A Conserved hypothetical 99.6 1.9E-12 6.6E-17 128.0 31.7 222 123-376 5-250 (273)
51 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.4E-14 1.5E-18 139.9 19.6 246 102-371 19-269 (275)
52 4e6h_A MRNA 3'-END-processing 99.6 3.5E-11 1.2E-15 132.3 44.2 443 139-622 47-570 (679)
53 2ho1_A Type 4 fimbrial biogene 99.6 4.9E-13 1.7E-17 130.5 26.7 202 173-378 37-239 (252)
54 2ho1_A Type 4 fimbrial biogene 99.6 6.3E-13 2.1E-17 129.7 27.3 202 124-343 37-239 (252)
55 2q7f_A YRRB protein; TPR, prot 99.6 9.4E-14 3.2E-18 134.6 20.1 205 489-700 24-228 (243)
56 2vq2_A PILW, putative fimbrial 99.6 1.1E-12 3.8E-17 125.2 27.1 203 172-377 7-211 (225)
57 2q7f_A YRRB protein; TPR, prot 99.6 1E-13 3.4E-18 134.4 19.5 201 123-342 22-222 (243)
58 2vq2_A PILW, putative fimbrial 99.6 8.4E-13 2.9E-17 126.1 25.4 205 121-342 5-211 (225)
59 3sf4_A G-protein-signaling mod 99.5 4.7E-13 1.6E-17 140.7 21.1 278 381-690 7-334 (406)
60 4a1s_A PINS, partner of inscut 99.5 5.2E-13 1.8E-17 140.8 19.5 276 385-691 50-371 (411)
61 4a1s_A PINS, partner of inscut 99.5 6.5E-13 2.2E-17 140.1 20.0 243 123-376 47-331 (411)
62 3vtx_A MAMA; tetratricopeptide 99.5 3.5E-12 1.2E-16 117.6 22.5 173 522-700 4-176 (184)
63 2ond_A Cleavage stimulation fa 99.5 1.2E-11 4E-16 124.6 26.9 219 141-378 33-271 (308)
64 3sf4_A G-protein-signaling mod 99.5 8.8E-13 3E-17 138.6 19.1 203 172-375 8-254 (406)
65 2ond_A Cleavage stimulation fa 99.5 4.6E-11 1.6E-15 120.3 29.6 217 470-690 33-268 (308)
66 3vtx_A MAMA; tetratricopeptide 99.5 8.4E-12 2.9E-16 115.0 22.2 167 123-307 4-170 (184)
67 3ro2_A PINS homolog, G-protein 99.5 9.8E-13 3.3E-17 134.1 17.4 206 124-340 5-250 (338)
68 3ro2_A PINS homolog, G-protein 99.5 1.9E-12 6.5E-17 131.9 19.3 277 174-482 6-332 (338)
69 3ulq_A Response regulator aspa 99.4 8.3E-12 2.9E-16 130.2 22.7 230 459-691 109-367 (383)
70 4abn_A Tetratricopeptide repea 99.4 6.3E-12 2.2E-16 134.6 21.1 215 469-689 84-318 (474)
71 4abn_A Tetratricopeptide repea 99.4 5E-12 1.7E-16 135.4 19.6 214 189-408 84-317 (474)
72 3ulq_A Response regulator aspa 99.4 1.9E-11 6.6E-16 127.4 22.8 228 494-724 109-365 (383)
73 3nf1_A KLC 1, kinesin light ch 99.4 2.4E-12 8.1E-17 129.8 14.3 244 418-690 27-305 (311)
74 3nf1_A KLC 1, kinesin light ch 99.4 3.5E-12 1.2E-16 128.5 15.4 174 168-341 22-223 (311)
75 3q15_A PSP28, response regulat 99.3 1.4E-10 4.7E-15 120.6 23.7 229 459-690 107-363 (378)
76 4gyw_A UDP-N-acetylglucosamine 99.3 3.4E-11 1.2E-15 134.0 19.7 168 121-306 6-173 (723)
77 4i17_A Hypothetical protein; T 99.3 1.1E-10 3.6E-15 111.8 20.3 207 486-706 5-221 (228)
78 1hz4_A MALT regulatory protein 99.3 6.5E-10 2.2E-14 115.3 27.7 167 174-340 15-201 (373)
79 1hz4_A MALT regulatory protein 99.3 7.8E-10 2.7E-14 114.7 28.0 163 388-550 19-201 (373)
80 3as5_A MAMA; tetratricopeptide 99.3 2.4E-10 8.3E-15 104.9 21.6 165 523-691 8-172 (186)
81 3q15_A PSP28, response regulat 99.3 4.1E-10 1.4E-14 117.0 25.1 229 424-656 107-364 (378)
82 4gyw_A UDP-N-acetylglucosamine 99.3 8.1E-11 2.8E-15 131.0 20.8 167 520-690 6-172 (723)
83 3as5_A MAMA; tetratricopeptide 99.3 2.5E-10 8.6E-15 104.8 19.7 165 173-341 8-172 (186)
84 4i17_A Hypothetical protein; T 99.2 7.7E-10 2.6E-14 105.8 20.8 206 172-389 6-220 (228)
85 1qqe_A Vesicular transport pro 99.2 5.5E-10 1.9E-14 111.3 18.8 174 524-701 78-276 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 2.8E-10 9.4E-15 112.6 14.7 227 464-691 12-280 (283)
87 3edt_B KLC 2, kinesin light ch 99.2 5.5E-10 1.9E-14 110.4 16.1 229 105-342 25-281 (283)
88 1qqe_A Vesicular transport pro 99.1 1.1E-09 3.6E-14 109.2 17.9 171 127-306 40-227 (292)
89 3urz_A Uncharacterized protein 99.1 2.4E-09 8.2E-14 100.6 19.0 181 123-307 3-186 (208)
90 3mv2_B Coatomer subunit epsilo 99.1 1.3E-08 4.4E-13 99.2 22.6 184 507-699 85-287 (310)
91 2uy1_A Cleavage stimulation fa 99.1 1.7E-07 5.7E-12 100.1 33.1 390 220-690 6-411 (493)
92 2uy1_A Cleavage stimulation fa 99.1 2E-07 6.7E-12 99.5 32.9 391 185-656 6-412 (493)
93 3urz_A Uncharacterized protein 99.1 5.1E-09 1.8E-13 98.3 18.0 136 563-704 59-196 (208)
94 3qky_A Outer membrane assembly 99.1 4.9E-09 1.7E-13 102.5 18.5 191 121-342 12-224 (261)
95 2fo7_A Synthetic consensus TPR 99.1 6.7E-09 2.3E-13 89.3 17.3 128 560-690 3-130 (136)
96 2pzi_A Probable serine/threoni 99.1 2.2E-09 7.7E-14 120.1 18.0 173 499-678 402-583 (681)
97 3dra_A Protein farnesyltransfe 99.1 9.4E-08 3.2E-12 94.2 26.7 218 140-376 49-286 (306)
98 3qky_A Outer membrane assembly 99.0 8.3E-09 2.8E-13 100.8 18.7 81 632-716 152-249 (261)
99 4ga2_A E3 SUMO-protein ligase 99.0 4.5E-10 1.5E-14 99.3 8.0 144 566-714 5-149 (150)
100 2fo7_A Synthetic consensus TPR 99.0 1E-08 3.4E-13 88.2 16.6 130 175-307 3-132 (136)
101 3dra_A Protein farnesyltransfe 99.0 1.4E-07 4.9E-12 93.0 26.7 233 174-411 34-286 (306)
102 3mv2_B Coatomer subunit epsilo 99.0 1.2E-07 4E-12 92.5 25.0 243 181-447 21-282 (310)
103 2r5s_A Uncharacterized protein 99.0 3.1E-09 1.1E-13 96.8 13.2 162 126-305 8-171 (176)
104 4ga2_A E3 SUMO-protein ligase 99.0 1.6E-09 5.6E-14 95.6 10.9 143 132-292 5-148 (150)
105 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.5E-08 1.5E-12 93.1 21.0 191 123-344 3-215 (225)
106 2pzi_A Probable serine/threoni 99.0 9.2E-09 3.2E-13 115.1 17.9 173 464-643 402-583 (681)
107 3rjv_A Putative SEL1 repeat pr 99.0 6.4E-08 2.2E-12 91.0 21.0 176 506-693 4-198 (212)
108 3qou_A Protein YBBN; thioredox 98.9 2.1E-08 7E-13 99.4 17.3 166 122-305 115-282 (287)
109 2yhc_A BAMD, UPF0169 lipoprote 98.9 6.5E-08 2.2E-12 92.0 19.3 186 173-379 4-215 (225)
110 3rjv_A Putative SEL1 repeat pr 98.9 1.4E-07 4.9E-12 88.6 21.2 175 472-658 5-198 (212)
111 2r5s_A Uncharacterized protein 98.9 8.8E-09 3E-13 93.8 11.5 159 177-339 10-170 (176)
112 3qou_A Protein YBBN; thioredox 98.9 3.5E-08 1.2E-12 97.8 16.4 165 520-690 114-282 (287)
113 2vsy_A XCC0866; transferase, g 98.9 3.1E-08 1.1E-12 108.9 17.6 154 137-308 2-158 (568)
114 2vsy_A XCC0866; transferase, g 98.9 4.5E-08 1.6E-12 107.6 18.3 154 501-658 2-158 (568)
115 3q7a_A Farnesyltransferase alp 98.8 1.1E-06 3.8E-11 87.4 25.6 172 138-328 68-257 (349)
116 4gco_A Protein STI-1; structur 98.8 7.5E-08 2.6E-12 81.8 14.1 113 593-709 13-125 (126)
117 3gyz_A Chaperone protein IPGC; 98.8 1.3E-07 4.6E-12 82.8 15.5 99 172-272 35-133 (151)
118 3q7a_A Farnesyltransferase alp 98.8 2.2E-06 7.6E-11 85.2 25.7 184 175-363 56-257 (349)
119 2ifu_A Gamma-SNAP; membrane fu 98.8 9.3E-08 3.2E-12 95.8 16.2 132 174-306 37-183 (307)
120 2ifu_A Gamma-SNAP; membrane fu 98.8 1.5E-07 5.1E-12 94.3 16.3 171 125-305 37-222 (307)
121 4gco_A Protein STI-1; structur 98.7 1.6E-07 5.6E-12 79.7 14.0 94 176-271 16-109 (126)
122 4f3v_A ESX-1 secretion system 98.7 2.5E-07 8.5E-12 89.0 16.4 203 101-308 19-238 (282)
123 2c2l_A CHIP, carboxy terminus 98.7 3.7E-08 1.3E-12 97.2 10.8 99 123-237 3-101 (281)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.7 4.1E-07 1.4E-11 85.4 17.6 132 524-663 7-154 (213)
125 4f3v_A ESX-1 secretion system 98.7 1.7E-07 6E-12 90.0 14.7 189 185-379 18-239 (282)
126 3u3w_A Transcriptional activat 98.7 5.3E-06 1.8E-10 82.3 26.1 162 529-690 81-264 (293)
127 3gyz_A Chaperone protein IPGC; 98.7 2.9E-08 9.7E-13 87.2 8.0 104 592-699 35-138 (151)
128 1a17_A Serine/threonine protei 98.7 4.5E-07 1.6E-11 81.1 15.8 128 175-305 15-144 (166)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 4.1E-11 82.2 19.2 129 175-309 8-152 (213)
130 1a17_A Serine/threonine protei 98.7 1E-06 3.6E-11 78.7 17.2 129 559-690 14-144 (166)
131 2lni_A Stress-induced-phosphop 98.7 4.9E-07 1.7E-11 77.3 14.4 120 121-257 13-132 (133)
132 2vgx_A Chaperone SYCD; alterna 98.6 7.9E-08 2.7E-12 84.4 8.7 107 581-690 10-116 (148)
133 2qfc_A PLCR protein; TPR, HTH, 98.6 2.5E-06 8.5E-11 84.7 20.8 165 526-690 78-264 (293)
134 2vgx_A Chaperone SYCD; alterna 98.6 2.2E-07 7.6E-12 81.5 11.2 99 172-272 20-118 (148)
135 1p5q_A FKBP52, FK506-binding p 98.6 1.1E-07 3.9E-12 96.3 10.6 132 172-305 146-292 (336)
136 2qfc_A PLCR protein; TPR, HTH, 98.6 2.4E-06 8.2E-11 84.8 20.0 168 127-303 78-262 (293)
137 2e2e_A Formate-dependent nitri 98.6 2.3E-07 7.8E-12 84.3 11.5 120 569-691 21-143 (177)
138 2c2l_A CHIP, carboxy terminus 98.6 2.3E-07 7.7E-12 91.5 12.1 98 488-587 4-101 (281)
139 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4E-11 73.8 15.1 113 173-288 9-121 (125)
140 2e2e_A Formate-dependent nitri 98.6 2.2E-07 7.5E-12 84.4 11.1 121 135-272 21-144 (177)
141 2vyi_A SGTA protein; chaperone 98.6 5.4E-07 1.8E-11 76.6 12.9 116 175-293 14-129 (131)
142 1na0_A Designed protein CTPR3; 98.6 8.6E-07 3E-11 74.6 14.0 96 593-690 9-104 (125)
143 3dss_A Geranylgeranyl transfer 98.6 2.4E-05 8.2E-10 77.5 25.9 174 134-326 39-240 (331)
144 3u3w_A Transcriptional activat 98.6 3.5E-06 1.2E-10 83.6 20.2 165 176-340 78-264 (293)
145 3gw4_A Uncharacterized protein 98.6 5.3E-07 1.8E-11 83.8 13.3 156 535-691 4-175 (203)
146 2lni_A Stress-induced-phosphop 98.6 7.8E-07 2.7E-11 76.0 12.8 97 592-690 15-111 (133)
147 3upv_A Heat shock protein STI1 98.5 1.1E-06 3.7E-11 74.5 13.3 96 593-690 4-99 (126)
148 2vyi_A SGTA protein; chaperone 98.5 2E-06 6.8E-11 73.0 14.8 94 561-656 15-108 (131)
149 1p5q_A FKBP52, FK506-binding p 98.5 1.1E-06 3.8E-11 89.0 15.0 146 123-271 146-293 (336)
150 2xcb_A PCRH, regulatory protei 98.5 8.2E-07 2.8E-11 77.2 11.2 99 172-272 17-115 (142)
151 1elw_A TPR1-domain of HOP; HOP 98.5 4E-06 1.4E-10 69.6 14.9 103 593-699 4-106 (118)
152 3gw4_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 80.9 12.9 156 184-340 3-174 (203)
153 2xcb_A PCRH, regulatory protei 98.5 1.1E-06 3.9E-11 76.3 11.4 101 122-238 16-116 (142)
154 4gcn_A Protein STI-1; structur 98.5 1.3E-06 4.4E-11 74.2 11.3 103 594-699 9-117 (127)
155 3dss_A Geranylgeranyl transfer 98.5 0.00013 4.6E-09 72.1 27.3 188 504-699 90-309 (331)
156 1elw_A TPR1-domain of HOP; HOP 98.4 4.6E-06 1.6E-10 69.2 14.5 94 177-272 8-101 (118)
157 2fbn_A 70 kDa peptidylprolyl i 98.4 4.6E-07 1.6E-11 84.0 8.1 128 560-690 40-184 (198)
158 4gcn_A Protein STI-1; structur 98.4 2.7E-06 9.3E-11 72.2 12.2 95 176-271 11-111 (127)
159 2fbn_A 70 kDa peptidylprolyl i 98.4 8.7E-07 3E-11 82.2 9.6 124 173-298 38-176 (198)
160 2dba_A Smooth muscle cell asso 98.4 5.4E-06 1.9E-10 72.2 14.4 112 592-708 27-142 (148)
161 3q49_B STIP1 homology and U bo 98.4 3.3E-06 1.1E-10 72.6 12.7 100 122-237 7-106 (137)
162 3upv_A Heat shock protein STI1 98.4 6.9E-06 2.4E-10 69.5 14.4 98 173-272 4-101 (126)
163 3sz7_A HSC70 cochaperone (SGT) 98.4 3.1E-06 1.1E-10 75.6 12.8 99 123-237 10-108 (164)
164 3sz7_A HSC70 cochaperone (SGT) 98.4 1.9E-06 6.4E-11 77.1 11.0 97 558-656 11-107 (164)
165 3q49_B STIP1 homology and U bo 98.3 4.2E-06 1.4E-10 71.9 12.1 98 591-690 7-104 (137)
166 1hxi_A PEX5, peroxisome target 98.3 4.7E-06 1.6E-10 69.9 12.1 100 595-698 19-118 (121)
167 1elr_A TPR2A-domain of HOP; HO 98.3 4E-06 1.4E-10 71.1 11.5 97 594-691 5-107 (131)
168 2kck_A TPR repeat; tetratricop 98.3 5E-06 1.7E-10 68.2 11.2 97 592-690 5-104 (112)
169 1hxi_A PEX5, peroxisome target 98.3 4.2E-06 1.4E-10 70.2 10.6 95 127-237 20-114 (121)
170 2dba_A Smooth muscle cell asso 98.3 1.4E-05 4.8E-10 69.5 14.2 103 122-237 26-128 (148)
171 1elr_A TPR2A-domain of HOP; HO 98.2 6.6E-06 2.3E-10 69.7 11.1 108 173-284 4-118 (131)
172 2kck_A TPR repeat; tetratricop 98.2 6.8E-06 2.3E-10 67.4 10.8 96 175-272 8-106 (112)
173 4b4t_Q 26S proteasome regulato 98.2 5.7E-05 1.9E-09 79.5 19.2 24 460-483 11-34 (434)
174 3rkv_A Putative peptidylprolyl 98.2 1.1E-05 3.7E-10 71.8 11.4 79 628-709 63-142 (162)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.1E-05 7.3E-10 83.2 15.2 143 123-269 267-412 (457)
176 1ihg_A Cyclophilin 40; ppiase 98.2 2.6E-05 9E-10 79.8 15.2 137 125-263 224-361 (370)
177 3rkv_A Putative peptidylprolyl 98.2 1.9E-05 6.4E-10 70.2 12.3 111 123-238 10-127 (162)
178 2xev_A YBGF; tetratricopeptide 98.2 3.6E-05 1.2E-09 65.1 13.6 96 129-236 7-104 (129)
179 3k9i_A BH0479 protein; putativ 98.1 6.9E-06 2.4E-10 68.4 8.8 86 136-237 2-90 (117)
180 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 2.5E-05 8.7E-10 82.6 15.2 151 538-692 249-415 (457)
181 1wao_1 Serine/threonine protei 98.1 1.5E-06 5.1E-11 92.6 5.3 86 184-271 17-102 (477)
182 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.8E-10 70.0 11.5 132 560-691 11-157 (164)
183 1wao_1 Serine/threonine protei 98.1 5.4E-06 1.8E-10 88.3 9.3 119 566-687 14-134 (477)
184 2xev_A YBGF; tetratricopeptide 98.1 6.9E-05 2.4E-09 63.3 14.6 94 177-272 6-105 (129)
185 1dce_A Protein (RAB geranylger 98.1 7.1E-05 2.4E-09 81.1 17.9 171 537-714 43-241 (567)
186 3ro3_A PINS homolog, G-protein 98.1 3.5E-05 1.2E-09 67.9 13.0 103 124-235 9-116 (164)
187 4b4t_Q 26S proteasome regulato 98.1 0.00016 5.4E-09 76.0 20.1 166 456-621 58-244 (434)
188 2hr2_A Hypothetical protein; a 98.1 1.4E-05 4.8E-10 69.1 9.4 95 596-690 14-129 (159)
189 1dce_A Protein (RAB geranylger 98.0 0.00019 6.5E-09 77.7 19.7 174 136-328 40-241 (567)
190 3k9i_A BH0479 protein; putativ 98.0 4.3E-06 1.5E-10 69.7 5.3 84 606-690 3-88 (117)
191 1ihg_A Cyclophilin 40; ppiase 98.0 5.5E-05 1.9E-09 77.4 14.2 91 592-684 272-362 (370)
192 2if4_A ATFKBP42; FKBP-like, al 98.0 2E-05 6.8E-10 79.8 10.3 149 124-307 179-328 (338)
193 2if4_A ATFKBP42; FKBP-like, al 98.0 1.5E-05 5E-10 80.8 9.0 153 523-698 179-332 (338)
194 1klx_A Cysteine rich protein B 98.0 0.00021 7.1E-09 61.3 15.0 110 573-693 10-127 (138)
195 2hr2_A Hypothetical protein; a 97.9 9.3E-05 3.2E-09 64.0 11.6 96 174-270 12-129 (159)
196 2l6j_A TPR repeat-containing p 97.9 1.7E-05 5.9E-10 65.0 6.9 95 627-724 3-104 (111)
197 3n71_A Histone lysine methyltr 97.8 8.9E-05 3E-09 78.3 10.6 97 595-691 353-463 (490)
198 1klx_A Cysteine rich protein B 97.8 0.00084 2.9E-08 57.5 14.9 111 537-658 9-127 (138)
199 1zu2_A Mitochondrial import re 97.7 5.4E-05 1.9E-09 65.3 7.0 56 645-703 63-129 (158)
200 1na3_A Designed protein CTPR2; 97.7 0.00029 9.9E-09 54.9 10.8 83 172-256 8-90 (91)
201 2l6j_A TPR repeat-containing p 97.7 3.6E-05 1.2E-09 63.0 5.4 94 173-268 4-103 (111)
202 3n71_A Histone lysine methyltr 97.7 0.00061 2.1E-08 71.9 15.9 131 134-271 319-463 (490)
203 2kat_A Uncharacterized protein 97.6 0.00028 9.4E-09 58.2 9.7 63 173-236 19-81 (115)
204 1na3_A Designed protein CTPR2; 97.6 0.00036 1.2E-08 54.4 9.8 83 123-221 8-90 (91)
205 2kat_A Uncharacterized protein 97.6 0.00019 6.6E-09 59.2 8.1 77 612-690 4-80 (115)
206 1zu2_A Mitochondrial import re 97.5 0.00019 6.4E-09 62.0 7.3 98 184-285 13-131 (158)
207 3ma5_A Tetratricopeptide repea 97.4 0.00041 1.4E-08 55.5 7.7 63 627-690 6-68 (100)
208 3ma5_A Tetratricopeptide repea 97.3 0.00062 2.1E-08 54.4 7.9 65 122-201 5-69 (100)
209 3ly7_A Transcriptional activat 97.3 0.0031 1.1E-07 62.6 13.4 76 625-704 274-349 (372)
210 3bee_A Putative YFRE protein; 97.0 0.0051 1.7E-07 48.1 9.4 69 626-697 4-75 (93)
211 3ly7_A Transcriptional activat 96.9 0.0092 3.2E-07 59.2 13.2 74 590-667 274-347 (372)
212 3qww_A SET and MYND domain-con 96.9 0.0061 2.1E-07 63.1 11.8 61 630-690 342-409 (433)
213 2kc7_A BFR218_protein; tetratr 96.8 0.0024 8.3E-08 50.6 6.6 59 179-238 6-65 (99)
214 3u64_A Protein TP_0956; tetrat 96.8 0.29 9.9E-06 46.5 21.3 83 260-344 180-271 (301)
215 3bee_A Putative YFRE protein; 96.8 0.0083 2.8E-07 46.8 9.3 70 121-205 3-75 (93)
216 3qwp_A SET and MYND domain-con 96.7 0.0057 2E-07 63.4 10.3 56 565-620 294-356 (429)
217 3u64_A Protein TP_0956; tetrat 96.6 0.23 7.9E-06 47.2 19.4 87 609-699 179-278 (301)
218 1pc2_A Mitochondria fission pr 96.6 0.012 4E-07 50.1 9.7 92 609-704 14-110 (152)
219 3qww_A SET and MYND domain-con 96.6 0.0037 1.3E-07 64.8 8.0 85 572-656 312-410 (433)
220 2kc7_A BFR218_protein; tetratr 96.6 0.0067 2.3E-07 47.9 7.7 58 599-657 6-64 (99)
221 3lvg_A Clathrin heavy chain 1; 96.5 6E-07 2.1E-11 90.0 -20.3 268 170-474 51-325 (624)
222 3qwp_A SET and MYND domain-con 96.4 0.011 3.6E-07 61.4 10.2 86 605-690 299-398 (429)
223 3mkq_A Coatomer beta'-subunit; 96.4 0.21 7.1E-06 56.9 22.1 103 317-446 633-735 (814)
224 3mkq_A Coatomer beta'-subunit; 96.3 0.2 6.7E-06 57.1 21.0 25 314-338 682-706 (814)
225 4ady_A RPN2, 26S proteasome re 96.0 2.9 0.0001 46.9 38.7 256 392-656 383-657 (963)
226 2v5f_A Prolyl 4-hydroxylase su 95.8 0.091 3.1E-06 41.8 10.9 76 122-205 3-78 (104)
227 2v5f_A Prolyl 4-hydroxylase su 95.8 0.041 1.4E-06 43.9 8.5 59 632-690 9-73 (104)
228 1wy6_A Hypothetical protein ST 95.7 0.65 2.2E-05 38.0 14.6 63 526-589 94-156 (172)
229 1pc2_A Mitochondria fission pr 95.7 0.067 2.3E-06 45.5 9.6 82 574-657 14-100 (152)
230 3mkq_B Coatomer subunit alpha; 95.5 0.33 1.1E-05 42.4 13.4 99 533-652 15-113 (177)
231 1wy6_A Hypothetical protein ST 95.3 1 3.4E-05 36.9 15.4 139 535-695 19-157 (172)
232 1nzn_A CGI-135 protein, fissio 95.1 0.093 3.2E-06 42.9 8.4 90 608-701 16-110 (126)
233 3mkq_B Coatomer subunit alpha; 94.8 1.9 6.3E-05 37.6 17.4 23 315-337 36-58 (177)
234 4h7y_A Dual specificity protei 94.6 0.27 9.1E-06 41.2 9.7 105 520-626 10-127 (161)
235 4h7y_A Dual specificity protei 94.3 0.73 2.5E-05 38.6 11.6 55 641-696 73-127 (161)
236 4ady_A RPN2, 26S proteasome re 93.3 13 0.00044 41.8 44.9 259 427-690 383-656 (963)
237 3o48_A Mitochondria fission 1 93.0 1.3 4.3E-05 36.4 10.9 80 623-704 35-117 (134)
238 1y8m_A FIS1; mitochondria, unk 92.9 1.9 6.6E-05 35.8 12.0 74 625-700 36-112 (144)
239 1nzn_A CGI-135 protein, fissio 92.7 0.56 1.9E-05 38.3 8.4 83 573-657 16-103 (126)
240 3lvg_A Clathrin heavy chain 1; 92.6 0.00079 2.7E-08 68.0 -10.2 246 123-404 53-325 (624)
241 4b4t_P 26S proteasome regulato 92.3 9.6 0.00033 39.3 19.6 164 527-690 141-322 (445)
242 3ffl_A Anaphase-promoting comp 91.2 0.49 1.7E-05 40.5 6.7 58 599-656 26-91 (167)
243 2wpv_A GET4, UPF0363 protein Y 89.8 15 0.00051 35.4 20.1 27 451-477 132-158 (312)
244 4b4t_P 26S proteasome regulato 89.2 22 0.00075 36.6 19.2 189 467-656 30-246 (445)
245 2ff4_A Probable regulatory pro 89.2 2.4 8E-05 43.0 11.3 68 632-700 175-247 (388)
246 4gns_B Protein CSD3, chitin bi 88.8 3.9 0.00013 45.0 13.2 53 636-689 345-397 (754)
247 4fhn_B Nucleoporin NUP120; pro 88.5 7.9 0.00027 45.6 16.7 152 102-261 826-989 (1139)
248 4gns_B Protein CSD3, chitin bi 88.0 2 6.7E-05 47.3 10.2 132 172-304 247-397 (754)
249 4fhn_B Nucleoporin NUP120; pro 87.2 9.4 0.00032 45.0 16.2 145 248-399 817-987 (1139)
250 3ffl_A Anaphase-promoting comp 87.1 3.9 0.00013 35.0 9.3 127 127-272 23-151 (167)
251 2wpv_A GET4, UPF0363 protein Y 86.3 25 0.00084 33.9 20.3 80 592-690 133-215 (312)
252 2ff4_A Probable regulatory pro 86.3 2.8 9.5E-05 42.5 9.7 53 566-619 179-231 (388)
253 3o48_A Mitochondria fission 1 85.2 6.9 0.00023 32.0 9.4 66 556-621 38-106 (134)
254 3lpz_A GET4 (YOR164C homolog); 84.9 30 0.001 33.6 21.8 133 125-291 36-180 (336)
255 3lpz_A GET4 (YOR164C homolog); 84.8 30 0.001 33.6 22.2 82 450-550 133-214 (336)
256 1v54_E Cytochrome C oxidase po 83.3 8.2 0.00028 29.7 8.4 60 610-670 27-86 (109)
257 3txn_A 26S proteasome regulato 81.6 46 0.0016 33.3 20.1 166 383-549 19-207 (394)
258 3esl_A Checkpoint serine/threo 80.6 12 0.0004 33.2 9.9 53 609-661 95-148 (202)
259 1v54_E Cytochrome C oxidase po 79.6 15 0.0005 28.3 8.6 47 575-621 27-73 (109)
260 2p58_C Putative type III secre 77.1 14 0.00049 28.2 7.9 78 223-308 22-99 (116)
261 2y69_E Cytochrome C oxidase su 76.8 23 0.0008 28.9 9.5 60 611-671 71-130 (152)
262 1y8m_A FIS1; mitochondria, unk 76.3 32 0.0011 28.5 12.6 66 591-656 37-105 (144)
263 2uwj_G Type III export protein 75.7 14 0.00047 28.3 7.4 78 223-308 21-98 (115)
264 1zbp_A Hypothetical protein VP 75.1 13 0.00046 34.7 9.0 55 567-622 6-60 (273)
265 3txn_A 26S proteasome regulato 74.7 73 0.0025 31.9 21.1 27 419-445 20-46 (394)
266 1qsa_A Protein (soluble lytic 72.8 1.1E+02 0.0036 32.9 35.4 137 218-364 16-152 (618)
267 2y69_E Cytochrome C oxidase su 71.8 26 0.00089 28.6 8.6 48 575-622 70-117 (152)
268 4b4t_R RPN7, 26S proteasome re 69.7 55 0.0019 33.3 13.4 61 560-620 133-195 (429)
269 4a1g_A Mitotic checkpoint seri 68.8 29 0.001 29.2 8.9 54 645-698 82-136 (152)
270 4b4t_R RPN7, 26S proteasome re 67.7 24 0.00082 36.1 10.1 99 524-622 132-237 (429)
271 1zbp_A Hypothetical protein VP 65.8 87 0.003 29.2 14.9 55 497-552 6-60 (273)
272 3esl_A Checkpoint serine/threo 65.1 51 0.0018 29.2 10.1 56 571-626 92-148 (202)
273 2wvi_A Mitotic checkpoint seri 65.0 41 0.0014 28.8 9.2 54 645-698 77-131 (164)
274 2p58_C Putative type III secre 64.9 37 0.0013 26.0 7.7 49 603-657 50-98 (116)
275 2uwj_G Type III export protein 61.9 36 0.0012 26.0 7.1 50 603-658 49-98 (115)
276 1qsa_A Protein (soluble lytic 57.3 2.1E+02 0.007 30.7 35.2 144 245-399 9-152 (618)
277 3kae_A CDC27, possible protein 54.1 1E+02 0.0036 26.3 10.2 26 665-690 116-141 (242)
278 4a1g_A Mitotic checkpoint seri 52.5 1E+02 0.0034 25.9 9.3 50 612-661 84-134 (152)
279 3eiq_C Programmed cell death p 52.4 1.3E+02 0.0043 29.6 11.6 69 596-665 220-290 (358)
280 4aez_C MAD3, mitotic spindle c 52.2 21 0.00072 32.2 5.5 53 645-697 131-184 (223)
281 1wdy_A 2-5A-dependent ribonucl 51.4 80 0.0027 29.3 10.3 8 217-224 11-18 (285)
282 1k1a_A B-cell lymphoma 3-encod 50.3 90 0.0031 28.1 10.2 20 253-272 16-35 (241)
283 3eu9_A Huntingtin-interacting 49.4 58 0.002 29.3 8.6 6 254-259 50-55 (240)
284 3pvs_A Replication-associated 47.8 2.2E+02 0.0076 28.9 13.3 165 503-686 166-353 (447)
285 4b4t_S RPN3, 26S proteasome re 46.5 99 0.0034 32.1 10.1 198 123-338 135-366 (523)
286 2wvi_A Mitotic checkpoint seri 45.7 1.4E+02 0.0048 25.4 9.8 50 612-661 79-129 (164)
287 3eiq_C Programmed cell death p 45.5 77 0.0026 31.2 8.9 27 175-201 56-82 (358)
288 1k1a_A B-cell lymphoma 3-encod 44.0 95 0.0032 27.9 9.2 26 215-240 13-38 (241)
289 3kea_A K1L; tropism, ANK repea 41.5 1.4E+02 0.0049 27.9 10.3 19 355-373 165-183 (285)
290 1wdy_A 2-5A-dependent ribonucl 40.7 85 0.0029 29.1 8.6 14 250-263 9-22 (285)
291 3e3v_A Regulatory protein RECX 40.1 1.5E+02 0.0053 25.5 9.1 51 574-625 49-99 (177)
292 3eu9_A Huntingtin-interacting 39.8 1E+02 0.0035 27.5 8.7 46 252-301 15-62 (240)
293 2r9g_A AAA ATPase, central reg 39.6 2E+02 0.0068 25.4 9.8 88 599-687 17-112 (204)
294 2d2s_A Exocyst complex compone 38.4 1.8E+02 0.006 26.6 9.6 30 276-305 89-118 (235)
295 3mv2_A Coatomer subunit alpha; 36.8 2.9E+02 0.01 26.5 11.3 52 258-309 185-238 (325)
296 1oyz_A Hypothetical protein YI 33.6 2.9E+02 0.0099 25.5 23.7 133 541-690 128-261 (280)
297 2d2s_A Exocyst complex compone 32.8 2.8E+02 0.0097 25.2 10.2 22 529-550 24-45 (235)
298 3kea_A K1L; tropism, ANK repea 32.3 2.3E+02 0.008 26.4 10.1 20 424-443 164-183 (285)
299 3kae_A CDC27, possible protein 32.0 1.8E+02 0.0061 24.9 7.5 28 628-655 114-141 (242)
300 2nsz_A Programmed cell death p 31.8 2E+02 0.0069 23.2 9.4 23 562-584 11-33 (129)
301 2zu6_B Programmed cell death p 31.6 3.4E+02 0.012 25.9 10.8 22 528-549 171-192 (307)
302 2zu6_B Programmed cell death p 31.6 1.4E+02 0.0049 28.5 8.1 66 596-662 169-236 (307)
303 2r9g_A AAA ATPase, central reg 30.5 2.8E+02 0.0096 24.4 9.0 34 466-500 27-60 (204)
304 3bge_A Predicted ATPase; struc 30.4 2.3E+02 0.0079 24.9 8.3 37 606-642 20-56 (201)
305 2ion_A PDCD4, programmed cell 29.7 2.2E+02 0.0074 23.9 8.0 25 561-585 12-36 (152)
306 4aez_C MAD3, mitotic spindle c 28.4 1.5E+02 0.0053 26.6 7.2 51 611-661 132-183 (223)
307 3ctd_A Putative ATPase, AAA fa 28.2 3.2E+02 0.011 24.3 9.2 69 598-666 37-113 (213)
308 3ltm_A Alpha-REP4; protein eng 27.5 3.1E+02 0.01 23.9 18.2 10 388-397 162-171 (211)
309 3jxi_A Vanilloid receptor-rela 26.9 44 0.0015 30.9 3.7 19 254-272 13-31 (260)
310 4gq2_M Nucleoporin NUP120; bet 26.9 4.8E+02 0.016 29.7 12.8 27 665-691 899-925 (950)
311 2ijq_A Hypothetical protein; s 26.4 3E+02 0.01 23.3 8.5 52 570-621 44-103 (161)
312 4gq2_M Nucleoporin NUP120; bet 26.2 3E+02 0.01 31.3 11.1 108 249-362 816-950 (950)
313 2nsz_A Programmed cell death p 26.1 2.6E+02 0.0088 22.5 9.0 23 353-375 12-34 (129)
314 3hra_A Ankyrin repeat family p 26.1 2E+02 0.0067 24.8 7.9 12 255-266 14-25 (201)
315 2ion_A PDCD4, programmed cell 25.7 2.5E+02 0.0084 23.5 7.7 24 352-375 13-36 (152)
316 3jxi_A Vanilloid receptor-rela 25.4 45 0.0016 30.8 3.5 56 285-340 9-73 (260)
317 3aji_A 26S proteasome non-ATPa 24.1 3E+02 0.01 24.2 9.0 18 251-268 11-28 (231)
318 1bpo_A Protein (clathrin); cla 23.2 4.5E+02 0.015 26.8 10.0 70 238-308 356-425 (494)
319 2v6y_A AAA family ATPase, P60 22.7 97 0.0033 22.8 4.0 17 674-690 22-38 (83)
320 3bge_A Predicted ATPase; struc 22.3 4E+02 0.014 23.4 9.5 35 465-499 19-53 (201)
321 3l6a_A Eukaryotic translation 22.1 4.8E+02 0.017 25.5 10.2 24 212-235 16-39 (364)
322 2w2u_A Hypothetical P60 katani 21.6 1.7E+02 0.0059 21.5 5.2 17 674-690 30-46 (83)
323 3ctd_A Putative ATPase, AAA fa 20.7 4.5E+02 0.015 23.3 9.6 36 465-500 47-82 (213)
324 3ygs_P Procaspase 9; apoptosis 20.7 2.4E+02 0.0081 21.4 6.1 37 398-438 52-88 (97)
325 1ug3_A EIF4GI, eukaryotic prot 20.4 1.7E+02 0.0058 28.5 6.5 22 213-234 16-37 (339)
326 3bu8_A Telomeric repeat-bindin 20.2 3.1E+02 0.011 24.5 7.1 49 609-657 88-143 (235)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-42 Score=383.42 Aligned_cols=489 Identities=11% Similarity=-0.003 Sum_probs=348.6
Q ss_pred ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004814 207 DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLIT 286 (729)
Q Consensus 207 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 286 (729)
++..|+.++..+.+.|++++|..+|+++.+. .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4444555555555555555555555555432 344455555555555555555555555554332 344555555555
Q ss_pred HHHhCCCHHHHHHHHHHHHh---------------CCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 287 GFSRNGELEQARGLIRDMLK---------------LGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATY 351 (729)
Q Consensus 287 ~~~~~g~~~~A~~~~~~m~~---------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 351 (729)
+|.+.|++++|.++|+++.. .+.+.+..+|+.++.+|.+.|++++|.++|++|.+.++. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 55555555555555543211 122335667777777777777777777777777765433 44455
Q ss_pred HHHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 004814 352 NILIYGLCKWGRVSDARH--R-FFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGL 428 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~ 428 (729)
..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 555544433322222111 1 344444343344555666677777788888888888877664 46777888888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAY 508 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 508 (729)
.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. ..+..++..++..|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 88888888888888887765 3466777888888888888888888888887653 335777777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 509 RLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG 588 (729)
Q Consensus 509 ~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 588 (729)
++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..++..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888887653 55788899999999999999999999999988753 477889999999999999999999999998875
Q ss_pred CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 004814 589 LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK----GIRPN--VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN 662 (729)
Q Consensus 589 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~ 662 (729)
+.+..+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 567889999999999999999999999999875 56777 7899999999999999999999999999875 568
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhhc
Q 004814 663 KYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 663 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
..+|..++.+|.+.|++++|.+.+++++ .+.|+.......++.+|.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESL--AISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHH--hcCCCChHHHHHHHHHHh
Confidence 8899999999999999999999999999 677876655555576664
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.6e-40 Score=371.49 Aligned_cols=488 Identities=11% Similarity=0.006 Sum_probs=423.3
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...|..++..|.+.|++++|+.+|+++.+. .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence 4667899999999999999999999999964 468889999999999999999999999998653 688999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhH
Q 004814 252 SFCKEGEMQEALELLWEMQGR---------------GCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSY 316 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 316 (729)
+|++.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.++|++|.+.+. .+...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHH
Confidence 999999999999999954322 2244688999999999999999999999999998753 356667
Q ss_pred HHHHHHHHhCCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 004814 317 NPIICGYSEKGLLVEALN--L-EEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGY 393 (729)
Q Consensus 317 ~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 393 (729)
..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+|+.++.+|
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence 767665554443333222 1 555555555556677888899999999999999999999876 48999999999999
Q ss_pred HHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 394 CRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAR 473 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (729)
.+.|++++|+++|+++.+.+ +.+..+++.++.++.+.|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999998765 3478899999999999999999999999999764 668899999999999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 004814 474 EFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDG 553 (729)
Q Consensus 474 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 553 (729)
++|+++.+... .+..++..++.++.+.|++++|+++++++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..
T Consensus 394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999998643 367899999999999999999999999999874 6688999999999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004814 554 FIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPT--LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN 627 (729)
Q Consensus 554 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 627 (729)
. .+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus 472 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 549 (597)
T 2xpi_A 472 Q-YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND 549 (597)
T ss_dssp C-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred C-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence 3 47899999999999999999999999999876 55677 7899999999999999999999999999874 348
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINEN 673 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 673 (729)
..+|..++.+|.+.|++++|.+.|+++.+.. +.+...+..+..+|
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 8999999999999999999999999999964 45667777776655
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=8.3e-28 Score=252.89 Aligned_cols=379 Identities=16% Similarity=0.078 Sum_probs=206.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 285 ITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRV 364 (729)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 364 (729)
...+.+.|++++|.+.++++.+.. +.+...+..+...+...|++++|...++...+..+ .+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 344555566666666666655543 22344455555555555566655555555554322 2445555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 365 SDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENM 444 (729)
Q Consensus 365 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 444 (729)
++|.+.|+++....+ .+..+|..++.++.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.++++
T Consensus 84 ~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555554332 233445555555555555555555555554432 112233344444444445555555555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI 524 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 524 (729)
++.. +.+..+|..+...+.+.|++++|...|+++ ++.+ |.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-----------------------------------l~~~-p~~~~ 204 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-----------------------------------VTLD-PNFLD 204 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH-----------------------------------HHHC-TTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------HhcC-CCcHH
Confidence 4432 223444444444444555555555544444 4432 33455
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA 604 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 604 (729)
.+..+...+...|++++|...++++++..+ .+..++..+...+.+.|++++|.+.++++.+.+ +.+..+|..++.++.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 555556666666666666666666655432 245556666666666666666666666666553 334556666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 605 ARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALR 684 (729)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~ 684 (729)
+.|++++|...++++.+.. +.+..++..++..+.+.|++++|...++++.+.. +.+..++..++.++.+.|++++|..
T Consensus 283 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666542 3355666666666666666666666666666542 3345566666666666677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHhhhc
Q 004814 685 LYKEMLDREIEPDYCTHSALLLKQLD 710 (729)
Q Consensus 685 ~~~~m~~~~~~pd~~~~~~ll~~~l~ 710 (729)
.|++++ .+.|+.......++..+.
T Consensus 361 ~~~~a~--~~~p~~~~a~~~lg~~~~ 384 (388)
T 1w3b_A 361 HYKEAI--RISPTFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHHH--TTCTTCHHHHHHHHHHHH
T ss_pred HHHHHH--hhCCCCHHHHHhHHHHHH
Confidence 666666 455554333222244443
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-27 Score=251.17 Aligned_cols=379 Identities=15% Similarity=0.024 Sum_probs=194.0
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 183 YTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
+.+.|++++|++.+.++.+..+. +...+..+...+...|++++|..+++...+.. +.+..+|..++..+.+.|++++|
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 34444444444444444443322 23333344444444455555555544444432 33444455555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 263 LELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.+.|+++.+.. +.+..+|..++..+.+.|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 55555544431 1123344445555555555555555555554433 113334444444555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYN 422 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~ 422 (729)
.+. +..+|..+...+.+.|++++|.+.|++++..++ .+...|..+...+...|++++|+..+++..... +.+..++.
T Consensus 165 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 QPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp CTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 222 344555555555555555555555555554432 334445555555555555555555555554432 12344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 004814 423 TLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLG 502 (729)
Q Consensus 423 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 502 (729)
.+...+...|++++|...++++++.+ +.+..+|..+...+.+.|++++|.+.++++.+.. +.+..++..+...+.+.|
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 319 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQG 319 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcC
Confidence 55555555555555555555555543 2344555556666666666666666666655542 224555555556666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 004814 503 DTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMG 572 (729)
Q Consensus 503 ~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 572 (729)
++++|...++++.+.. |.+..++..++..+.+.|++++|...++++++..+ .+...+..+...+...|
T Consensus 320 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 320 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 6666666666655542 44556666666666666666666666666665432 24555666655555544
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=3.1e-29 Score=268.01 Aligned_cols=204 Identities=20% Similarity=0.242 Sum_probs=119.9
Q ss_pred HHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---------HHH
Q 004814 227 AREVYRMMGEFGIKPSI-VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGE---------LEQ 296 (729)
Q Consensus 227 A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~ 296 (729)
+..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444455544444333 24666677777777777777777777777777777777777777765543 455
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 004814 377 KNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR 430 (729)
Q Consensus 377 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~ 430 (729)
.|+.||..+|++||.+|++.|+.++|.++|++|.+.+..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666555544
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=262.76 Aligned_cols=206 Identities=15% Similarity=0.170 Sum_probs=169.6
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC---------HH
Q 004814 261 EALELLWEMQGRGCSPNG-VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL---------LV 330 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---------~~ 330 (729)
.+..+.+++.+++..+.. ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 445556677666655443 35788899999999999999999999999999999999999999887654 67
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004814 331 EALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELR 410 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 410 (729)
+|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 004814 411 SRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKM 466 (729)
Q Consensus 411 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (729)
+.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999988899999999988888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.8e-24 Score=236.43 Aligned_cols=456 Identities=11% Similarity=-0.011 Sum_probs=294.0
Q ss_pred hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 208 VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITG 287 (729)
Q Consensus 208 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 287 (729)
...+......+.+.|++++|+..|+++.+.+ |+..+|..++.++.+.|++++|.+.++++.+.+ +.+..+|..++..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3445566666777777777777777776653 566667777777777777777777777766652 3345566666667
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 288 FSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367 (729)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 367 (729)
+.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+..-......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 7777777777777776666542 33334444444443333333333333333332222222111110000000
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 004814 368 RHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR---YGDLEVAQQLKENM 444 (729)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~ 444 (729)
....|+.......+. ........ .....+.+...+......+.. .|++++|...++++
T Consensus 155 ---------~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMASFFG----IFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHT----TSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHHHHh----hcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 001122111111100 00000000 000001123344444444443 78888888888888
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 004814 445 IN-----QGI--------LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQ 511 (729)
Q Consensus 445 ~~-----~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~ 511 (729)
++ ..- +.+..++..+...+...|++++|...++++.+.... ...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 311 223567777888888889999999999888887433 777778888888899999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 512 EEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSP 591 (729)
Q Consensus 512 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 591 (729)
+.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 8888764 556778888888999999999999999998887533 56778888888999999999999999988764 45
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIR-PN----VITYNALINGLCR---LRRIDQAYGLFIDMEEEGILPNK 663 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 663 (729)
+..++..++..|...|++++|...++++.+.... ++ ...+..++.++.. .|++++|...++++.+.. +.+.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH
Confidence 6778888899999999999999999988764211 11 3378888889999 899999999999998864 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 664 YTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTH 701 (729)
Q Consensus 664 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~ 701 (729)
.++..++.++.+.|++++|...+++++ .+.|+....
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~--~~~~~~~~~ 485 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESA--DLARTMEEK 485 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCSSHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--HhccccHHH
Confidence 788889999999999999999999998 566765443
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.2e-24 Score=232.85 Aligned_cols=449 Identities=10% Similarity=-0.039 Sum_probs=284.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
...+..++..|.+.|++++|+..|+++++.+ |+..++..++.++.+.|++++|...|+++.+.+ +.+..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567778899999999999999999999976 688999999999999999999999999999876 6678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (729)
+.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-......
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 999999999999999999874 345555555555555444444444444333332222222111111000000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH---cCCHHHHHHHHHHH
Q 004814 333 LNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR---SGNIGEAFLLFDEL 409 (729)
Q Consensus 333 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m 409 (729)
....|+.......+..+...... . ....+.+...+......+.. .|++++|+..|+++
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMASFFGIFKPELTF----A------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----S------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHHHHhhcCHHHHH----H------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00111211111111000000000 0 00000112233333333332 45555555555555
Q ss_pred hh-----C--CC------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 410 RS-----R--NL------VPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFF 476 (729)
Q Consensus 410 ~~-----~--~~------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (729)
.+ . .. +.+..++..+...+...|++++|...++++.+.... ..++..+...+...|++++|.+.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44 2 00 113445566666666677777777777766665422 666666677777777777777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 004814 477 NEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIP 556 (729)
Q Consensus 477 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 556 (729)
+++.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .
T Consensus 294 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~ 370 (514)
T 2gw1_A 294 DKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-E 370 (514)
T ss_dssp HHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-T
T ss_pred HHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-c
Confidence 777665322 45566666667777777777777777776653 44566777777777788888888888887776542 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCH
Q 004814 557 DHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL-SPT----LVTYTVLIHAHAA---RGRLELAFMYFSEMQVKGIRPNV 628 (729)
Q Consensus 557 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 628 (729)
+..++..+...+...|++++|...++++.+... .++ ...+..++..+.. .|++++|...++++.+.. +.+.
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~ 449 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSE 449 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccH
Confidence 456777777888888888888888887776421 111 3377888888888 888888888888887753 2356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 629 ITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 629 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
..+..++.+|.+.|++++|...++++.+.
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 77788888888888888888888888875
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=7.5e-23 Score=225.03 Aligned_cols=442 Identities=12% Similarity=-0.014 Sum_probs=237.6
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
....+..++..|.+.|++++|+..|+++++..+. +..++..++.++.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 3566778889999999999999999999987754 77888889999999999999999999998875 567888899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC--ccChhhHHHHHHHHHhCCCH
Q 004814 252 SFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL--KVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~ 329 (729)
++...|++++|...|+.+ .. .|+.. ...+..+...+...+|...++++.+... .+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999643 22 22221 2223445555666788888888865421 11111223334445555665
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHH
Q 004814 330 VEALNLEEEMVTRGVAPTLA-TYNILIYGLCK--------WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIG 400 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 400 (729)
+.+...+...... .+... ....+...+.. .|++++|...++++.+..+ .+...+..+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p-~~~~~~~~~----------- 242 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT-VDDPLRENA----------- 242 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C-CCHHHHHHH-----------
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC-CcchhhHHH-----------
Confidence 5555444332221 11111 12222221111 1345555555555554332 111110000
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 401 EAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 401 ~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
..++..+...+...|++++|...++++.+.. |+...+..+...+...|++++|.+.++++.
T Consensus 243 -----------------~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 303 (537)
T 3fp2_A 243 -----------------ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAV 303 (537)
T ss_dssp -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 1123333334444444444444444444432 224444444444444455555555555444
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHIT 560 (729)
Q Consensus 481 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 560 (729)
+.... +..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+..+ .+...
T Consensus 304 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 380 (537)
T 3fp2_A 304 DLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLPEV 380 (537)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHH
T ss_pred ccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 43211 33444444444555555555555555544432 33344555555555555555555555555555432 23445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCC
Q 004814 561 YTSIIHASLEMGDLRRGRDLFNNMLRKG-----LSPTLVTYTVLIHAHAAR----------GRLELAFMYFSEMQVKGIR 625 (729)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~ 625 (729)
+..+...+...|++++|.+.++++.+.. .......+..+...+... |++++|...++++.+.. +
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p 459 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-P 459 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-C
Confidence 5555555556666666666665554321 011122233444455555 66666666666666542 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 626 PNVITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 626 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.+...+..++.+|.+.|++++|.+.|+++.+.
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 24555666666666666666666666666654
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=6.9e-23 Score=225.29 Aligned_cols=437 Identities=13% Similarity=0.060 Sum_probs=292.1
Q ss_pred hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 208 VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITG 287 (729)
Q Consensus 208 ~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 287 (729)
...+..+...+.+.|++++|+..|+++++.. +.+..+|..++.++.+.|++++|.+.|+++.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3445556666666666666666666666554 4455666666666666666666666666665542 2245555556666
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 288 FSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDA 367 (729)
Q Consensus 288 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 367 (729)
+...|++++|...|+ ..... |+ .....+..+...+.. .+|
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~-----------------------------------~~a 142 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLN-----------------------------------KQA 142 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHH-----------------------------------HHH
T ss_pred HHHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHH-----------------------------------HHH
Confidence 666666666666664 22211 11 111112223333333 444
Q ss_pred HHHHHHHHHCCC--CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHh-hHHHHHHHH--------HhcCCHHH
Q 004814 368 RHRFFEMLRKNV--IPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVV-TYNTLIDGL--------CRYGDLEV 436 (729)
Q Consensus 368 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~-~~~~ll~~~--------~~~g~~~~ 436 (729)
...++++....+ .+........+..+....+.+.+...+.+.... .+... ....+...+ ...|++++
T Consensus 143 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 220 (537)
T 3fp2_A 143 MKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTK 220 (537)
T ss_dssp HHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 444444433210 000111122233334444444444333322211 11111 111111111 12257888
Q ss_pred HHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 004814 437 AQQLKENMINQGILPD-------VITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYR 509 (729)
Q Consensus 437 A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 509 (729)
|..+++++++.. +.+ ..++..+...+...|++++|...++++.+. .|+...+..+...+...|++++|..
T Consensus 221 A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 221 STDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHH
Confidence 888888888764 223 235667778888999999999999999987 4567888888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 510 LQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 510 l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (729)
.++.+.+.. +.+..++..+...+...|++++|...++++++..+. +...+..+...+...|++++|.+.++++.+..
T Consensus 298 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~- 374 (537)
T 3fp2_A 298 FFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF- 374 (537)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998874 667889999999999999999999999999987533 56788999999999999999999999999875
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 004814 590 SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKG-----IRPNVITYNALINGLCRL----------RRIDQAYGLFIDM 654 (729)
Q Consensus 590 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m 654 (729)
+.+...+..++..+...|++++|...++++.+.. .......+..+..++... |++++|...++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 5667899999999999999999999999987642 111223345556778888 9999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 655 EEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 655 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
.+.. +.+...+..++.+|.+.|++++|.+.|+++++ +.|+
T Consensus 455 ~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~ 494 (537)
T 3fp2_A 455 CELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LART 494 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--
T ss_pred HHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCC
Confidence 9874 55778999999999999999999999999994 4454
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.2e-22 Score=215.98 Aligned_cols=316 Identities=13% Similarity=0.066 Sum_probs=235.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+..++..++..+.+.|++++|...|++++..+|. +...+..++.+|.+.|++++|+..|++++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 357788889999999999999999999999887765 46788889999999999999999999999
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh---hhHHHHH------------HHHHhcCCHHHHHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI---VTYNTML------------DSFCKEGEMQEALEL 265 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li------------~~~~~~g~~~~A~~~ 265 (729)
+.++. +..++..++.+|.+.|++++|...|+++.+.+ +.+. .++..++ ..+.+.|++++|...
T Consensus 88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 165 (450)
T 2y4t_A 88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF 165 (450)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 87754 67788889999999999999999999998864 3344 5665553 447888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 004814 266 LWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA 345 (729)
Q Consensus 266 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (729)
|+++.+. .+.+...+..++..|.+.|++++|.+.|+++.+.. +.+..++..++..|...|++++|++.|+++....+.
T Consensus 166 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 243 (450)
T 2y4t_A 166 LDKILEV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243 (450)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHh-CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8888775 24467778888888888888888888888888764 346778888888888888888888888888765332
Q ss_pred CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 346 PTLATYNIL------------IYGLCKWGRVSDARHRFFEMLRKNVIPD-----IISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 346 p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
+...+..+ +..+.+.|++++|.+.|++++... |+ ...+..+...+.+.|++++|+..+++
T Consensus 244 -~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 320 (450)
T 2y4t_A 244 -HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320 (450)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444443 666777777777777777776643 22 33566666777777777777777777
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 409 LRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMV 460 (729)
Q Consensus 409 m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 460 (729)
+.+.. +.+..++..+..+|...|++++|...++++++.. +.+...+..+.
T Consensus 321 a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 321 VLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 66542 2355666677777777777777777777776653 23444444444
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=5.2e-22 Score=213.01 Aligned_cols=330 Identities=12% Similarity=0.040 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 190 EQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
..+...+.++....+. +...+..++..+.+.|++++|+.+|+++.+.. +.+..+|..++.++.+.|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQSMA-DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp --------------CH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccccccccccccccHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555544432 45556666666666666666666666666543 445666666666666666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccCh---hhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 004814 270 QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSA---HSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP 346 (729)
Q Consensus 270 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 346 (729)
.+.+ +.+..++..++..|.+.|++++|.+.|+++.+.+. .+. .++..++..+..
T Consensus 87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH---------------------
T ss_pred HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH---------------------
Confidence 6542 23455666666666666666666666666665431 122 344444333110
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
..+..+...+.+.|++++|.+.|+++....+ .+...+..++..|.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 219 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKIST 219 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 0111223345556666666666666655433 345555666666666666666666666655432 234555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----Hh
Q 004814 427 GLCRYGDLEVAQQLKENMINQGILPDVITYTIM------------VNGSCKMGNLSMAREFFNEMLRKGLQPD-----RF 489 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~g~~~~-----~~ 489 (729)
.+...|++++|...++++.+.. +.+...+..+ +..+.+.|++++|.+.|+++.+.. |+ ..
T Consensus 220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~ 296 (450)
T 2y4t_A 220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVR 296 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHH
Confidence 6666666666666666665542 2233333333 556666666777776666666642 22 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 490 AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD 552 (729)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 552 (729)
.+..+...+.+.|++++|+..++.+.+.. |.+..+|..++.+|...|++++|...++++++.
T Consensus 297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45555566666666666666666665542 445666666666666666666666666666654
No 13
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.89 E-value=5.5e-18 Score=183.49 Aligned_cols=355 Identities=14% Similarity=0.018 Sum_probs=173.8
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCH
Q 004814 277 NGVTYNVLITGFSR----NGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE----KGLLVEALNLEEEMVTRGVAPTL 348 (729)
Q Consensus 277 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 348 (729)
+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44555555555555 555666666666555543 34455555555555 555555555555555543 34
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHhh
Q 004814 349 ATYNILIYGLCK----WGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR----SGNIGEAFLLFDELRSRNLVPTVVT 420 (729)
Q Consensus 349 ~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~ 420 (729)
..+..|...|.. .+++++|.+.|++....| +...+..+...|.. .++.++|++.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444445555554 455555555555555432 33444444444444 444555555555544433 3444
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 004814 421 YNTLIDGLCR----YGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIA 496 (729)
Q Consensus 421 ~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~ 496 (729)
+..+...|.. .++.++|.+++++..+.+ +...+..+...|...
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g------------------------------ 232 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG------------------------------ 232 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT------------------------------
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC------------------------------
Confidence 4444444444 444555555555444432 333444444444430
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-
Q 004814 497 GELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCK----LGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEM- 571 (729)
Q Consensus 497 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~- 571 (729)
....+++++|...++...+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|...
T Consensus 233 -~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~ 305 (490)
T 2xm6_A 233 -IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA 305 (490)
T ss_dssp -SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC
Confidence 001444444544444444432 33334444444444 455555555555554432 233444444444444
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 004814 572 ----GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG---RLELAFMYFSEMQVKGIRPNVITYNALINGLCR---- 640 (729)
Q Consensus 572 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~---- 640 (729)
+++++|...+++..+.+ +...+..+...|...| +.++|++.|++..+.| +...+..+...|..
T Consensus 306 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~ 379 (490)
T 2xm6_A 306 EGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGV 379 (490)
T ss_dssp TTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 45555555555555443 3334444555554433 4555555555555542 44455555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 004814 641 LRRIDQAYGLFIDMEEEGILPNKYTYTILINENCN----AGNWQEALRLYKEMLDR 692 (729)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~ 692 (729)
.++.++|...|++..+.| +...+..|...|.. .+++++|...|+++.+.
T Consensus 380 ~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 380 KKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 455555555555555543 34445555555554 45555555555555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3.2e-19 Score=184.65 Aligned_cols=331 Identities=12% Similarity=0.030 Sum_probs=226.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 004814 347 TLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLID 426 (729)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~ 426 (729)
++..+..+...+...|++++|...|++++...+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 345566666667777777777777777666543 445666666666666677777776666666543 224455666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 004814 427 GLCRYGDLEVAQQLKENMINQGIL--PDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT 504 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 504 (729)
.+...|++++|...++++.+.... .+...+..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666666654210 12223322211100 00122234567777888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 505 SEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 505 ~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888777663 5567778888888888888888888888887764 336677888888888888888888888888
Q ss_pred HHCCCCCChhhHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 004814 585 LRKGLSPTLVTYT------------VLIHAHAARGRLELAFMYFSEMQVKGIRPNV----ITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 585 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~----~~~~~l~~~~~~~g~~~~A~ 648 (729)
.+.. +.+...+. .++..+.+.|++++|...++++.+.... +. ..+..++.++.+.|++++|.
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 7763 33344333 2366788999999999999999885322 33 23556788999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 004814 649 GLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL 709 (729)
Q Consensus 649 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l 709 (729)
..++++.+.. +.+..++..++.++...|++++|.+.+++++ .+.|+.......+..+.
T Consensus 293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~--~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ--EHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCCChHHHHHHHHHH
Confidence 9999999863 5578899999999999999999999999999 77787655444434443
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=3.3e-19 Score=184.54 Aligned_cols=314 Identities=8% Similarity=-0.039 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
+..+..++..+...|++++|...+++++..+|. +...+..++.+|...|++++|+..|+++++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 67 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK 67 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 455666666666677777777777666666554 34556666666666677777777766666654
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIK---PSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 280 (729)
+. +...+..+..++...|++++|...|+++.+.. + .+...+..+..... ...
T Consensus 68 ~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~ 122 (359)
T 3ieg_A 68 MD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQR 122 (359)
T ss_dssp TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHH
T ss_pred CC-cchHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHH
Confidence 33 45556666666666666666666666666543 2 23333333310000 000
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK 360 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 360 (729)
+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+..+. +...+..+...+..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 1111344444455555555555544432 223444444555555555555555555554443221 34444555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHH------------HHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH----hhHHHH
Q 004814 361 WGRVSDARHRFFEMLRKNVIPDIISY------------NTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV----VTYNTL 424 (729)
Q Consensus 361 ~g~~~~A~~~~~~~~~~~~~~~~~~~------------~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~~~~l 424 (729)
.|++++|.+.+++..+..+ .+...+ ..+...+.+.|++++|...++++.+.... +. ..+..+
T Consensus 201 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~l 278 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERI 278 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Confidence 5555555555555544332 122211 12245566667777777777666654311 22 223445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
..++...|++++|...++++++.. +.+..++..+...+.+.|++++|.+.|+++.+.
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 666667777777777777776653 345666777777777777777777777777765
No 16
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.88 E-value=6.5e-18 Score=182.95 Aligned_cols=371 Identities=14% Similarity=0.048 Sum_probs=269.6
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHH
Q 004814 225 VKAREVYRMMGEFGIKPSIVTYNTMLDSFCK----EGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSR----NGELEQ 296 (729)
Q Consensus 225 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~ 296 (729)
..+...+....+. .+...+..+...|.. .+++++|...|++..+.| +...+..|...|.. .++.++
T Consensus 24 ~~~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 24 NVNLEQLKQKAES---GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp -CCHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred hHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 3456677777664 478888999999998 899999999999998874 67788889999998 899999
Q ss_pred HHHHHHHHHhCCCccChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004814 297 ARGLIRDMLKLGLKVSAHSYNPIICGYSE----KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCK----WGRVSDAR 368 (729)
Q Consensus 297 A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~ 368 (729)
|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 98 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 98 AVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 999999999876 67788889999988 899999999999999875 67788888988887 88999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHH
Q 004814 369 HRFFEMLRKNVIPDIISYNTLLYGYCR----SGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCR----YGDLEVAQQL 440 (729)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~ 440 (729)
+.|++..+.+ +...+..+...|.. .++.++|++.|++..+.+ +...+..+...|.. .++.++|..+
T Consensus 172 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 172 EWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999999864 67888899999988 899999999999998876 56778888888876 7899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 441 KENMINQGILPDVITYTIMVNGSCK----MGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLA 516 (729)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~ 516 (729)
+++..+.+ +...+..+...|.. .++.++|.+.|++..+.| +...+..+...|....
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~-------------- 305 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGA-------------- 305 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCB--------------
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCC--------------
Confidence 99988765 55667777777766 677777777777776543 3334444444444330
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCh
Q 004814 517 KGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMG---DLRRGRDLFNNMLRKGLSPTL 593 (729)
Q Consensus 517 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~ 593 (729)
....+++++|...+++..+.+ +...+..+...|...| ++++|.+.|++..+.| +.
T Consensus 306 ----------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~ 363 (490)
T 2xm6_A 306 ----------------EGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EK 363 (490)
T ss_dssp ----------------TTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CH
T ss_pred ----------------CCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CH
Confidence 000145555555555555443 2334444444444433 4556666666655543 45
Q ss_pred hhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004814 594 VTYTVLIHAHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 594 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 658 (729)
..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .++.++|...|++..+.|
T Consensus 364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 555566666655 566666666666666643 45555666666665 566666666666666654
No 17
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.86 E-value=6.9e-16 Score=174.09 Aligned_cols=377 Identities=13% Similarity=0.092 Sum_probs=231.3
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFG--IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFS 289 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 289 (729)
...++.|...|.+.+|+++++++...+ +..+...-+.++....+. +..+..+...+.... + ..-+...+.
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai 1060 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAI 1060 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHH
Confidence 345556666777777777777666321 012334445555555554 445555555544422 1 222556666
Q ss_pred hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 290 RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARH 369 (729)
Q Consensus 290 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 369 (729)
..|.+++|..+|++... .....+.++ ...|++++|.++.++.. +..+|..+..++.+.|++++|.+
T Consensus 1061 ~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred hCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHH
Confidence 67777777777776421 112222222 25667777777766441 46667777777777777777777
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 370 RFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGI 449 (729)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 449 (729)
.|.+. .|...|..++..+.+.|++++|.+.|...++.. ++....+.++.+|++.+++++..... +
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---
Confidence 77543 456667777777777777777777777666543 23333334777777777766533332 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL 529 (729)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l 529 (729)
.++...|..+...|...|++++|..+|..+ ..|..+..++.+.|++++|++.+++. .+..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHH
Confidence 335556666777777777777777777664 36677777777777777777777654 256777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc--C
Q 004814 530 VHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR--G 607 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g 607 (729)
..+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++..+... +.....|+-+...|++- +
T Consensus 1257 ~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 77777777777776655432 2345556677777777788888888877776554 34455666666666553 3
Q ss_pred CHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 004814 608 RLELAFMYFSEMQVKGIRP------NVITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~A~ 648 (729)
+..++.++|..-.. +++ +...|..++..|.+.|+++.|.
T Consensus 1331 klmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1331 KMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 45555555543322 222 4556777777777778877777
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=5.7e-19 Score=180.53 Aligned_cols=294 Identities=11% Similarity=0.000 Sum_probs=204.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 004814 416 PTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQI 495 (729)
Q Consensus 416 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li 495 (729)
.+...+..+...+...|++++|.++++++.+.. +.+...+..++..+...|++++|...++++.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 344455556666666666666666666666553 334445555556666666666666666666665322 445566666
Q ss_pred HHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 496 AGELKLG-DTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDL 574 (729)
Q Consensus 496 ~~~~~~g-~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (729)
..+...| ++++|...++.+.+.. +.+...|..+...+...|++++|...++++.+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 6666666 6777777777666653 445666777777788888888888888877776432 445566677788888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 004814 575 RRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKG--------IRPNVITYNALINGLCRLRRIDQ 646 (729)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g--------~~p~~~~~~~l~~~~~~~g~~~~ 646 (729)
++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+.. .+.+...+..++.+|...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888887764 5567778888888888888888888888877631 13345678888888889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhh-ccchhhcH
Q 004814 647 AYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL-DKDYKVHA 717 (729)
Q Consensus 647 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l-~~~g~~~a 717 (729)
|...++++.+.. +.+...+..++.++.+.|++++|.+.+++++ .+.|+.......++.++ ...|+.++
T Consensus 255 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 255 ALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL--GLRRDDTFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT--TTCSCCHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH--ccCCCchHHHHHHHHHHHHHhCchhc
Confidence 999999888864 4567788888888999999999999999888 67776555455547777 45555543
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.8e-17 Score=181.36 Aligned_cols=420 Identities=10% Similarity=0.010 Sum_probs=265.9
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...|..++. +.+.|++++|..+|+++++..+. +...|...+..+.+.|++++|..+|+++++.. |+...|...+.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~-~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS-SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5677888887 47889999999999999987644 67789999999999999999999999999864 67777877775
Q ss_pred HH-HhcCCHHHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHhCCCccChhh
Q 004814 252 SF-CKEGEMQEALE----LLWEMQG-RGCSP-NGVTYNVLITGFSR---------NGELEQARGLIRDMLKLGLKVSAHS 315 (729)
Q Consensus 252 ~~-~~~g~~~~A~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~ 315 (729)
.. ...|++++|.+ +|++... .|..| +...|...+....+ .|++++|+.+|++.++.........
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 43 34577776665 6766654 24443 45677777776654 6788999999999887311111123
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC---CCCC----
Q 004814 316 YNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEM------LRKN---VIPD---- 382 (729)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~~~---- 382 (729)
|..........|. .+...++. .+.++++.|..++.++ .+.. +.|+
T Consensus 168 ~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~ 225 (530)
T 2ooe_A 168 WRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225 (530)
T ss_dssp HHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CC
T ss_pred HHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChh
Confidence 3222221100010 00011110 0123445555544442 1111 1222
Q ss_pred ----HhHHHHHHHHHHHc----CCH----HHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-------cCCHH-------H
Q 004814 383 ----IISYNTLLYGYCRS----GNI----GEAFLLFDELRSRNLVPTVVTYNTLIDGLCR-------YGDLE-------V 436 (729)
Q Consensus 383 ----~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~ 436 (729)
...|...+...... ++. ..+..+|++..... +.+...|..++..+.+ .|+++ +
T Consensus 226 ~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 304 (530)
T 2ooe_A 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDE 304 (530)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHH
Confidence 23454444333221 122 35666777766542 3355666666666654 57765 7
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 437 AQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD--RFAYTTQIAGELKLGDTSEAYRLQEEM 514 (729)
Q Consensus 437 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~ 514 (729)
|..++++.++.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ ...|...+..+.+.|+.++|..+|+..
T Consensus 305 A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 305 AANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp HHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 7777777775222445777777777777788888888888887775 333 246777777777777788888888877
Q ss_pred HHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC
Q 004814 515 LAKGFPPDLITYNVLVHG-LCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKG-LSPT 592 (729)
Q Consensus 515 ~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 592 (729)
.+.. +.+...|...+.. +...|+.++|..+|++.++..+ .+...|..++..+.+.|+.++|..+|++.+..+ ..|+
T Consensus 383 l~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 383 REDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred Hhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 7652 2223333322222 2357888888888888777542 356777788888888888888888888887763 1221
Q ss_pred --hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 593 --LVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 593 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
...|...+......|+.+.+..+++++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 336777777777788888888888887764
No 20
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=3e-15 Score=168.95 Aligned_cols=444 Identities=14% Similarity=0.114 Sum_probs=283.1
Q ss_pred ChHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCC
Q 004814 89 DPELLVRVLNRIREKPRIALRFFRWVETQ-PGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGL 167 (729)
Q Consensus 89 ~~~~~~~vl~~~~~~~~~al~~f~~~~~~-~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~ 167 (729)
||++=..||.. +-..-..+.+|...- -.-..++.--...++.+...|.+.+|+.++++++.. +..+
T Consensus 952 d~~lW~~vl~~---~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~-~s~f--------- 1018 (1630)
T 1xi4_A 952 DPELWGSVLLE---SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD-NSVF--------- 1018 (1630)
T ss_pred CHHHHHHHhcC---CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC-CCcc---------
Confidence 55555555532 223445677785431 112445566678888899999999999999998833 2200
Q ss_pred CCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHH
Q 004814 168 SSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYN 247 (729)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 247 (729)
+ .+..+-+.|+..-.+. +..+..+...+.-.. + ...++..+...|.+++|..+|++.. -.....+
T Consensus 1019 s--~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~ 1083 (1630)
T 1xi4_A 1019 S--EHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQ 1083 (1630)
T ss_pred c--ccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHH
Confidence 0 1233444455555444 334444444443321 1 2346777778888888888888753 1222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCC
Q 004814 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKG 327 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 327 (729)
.++. ..|++++|.++.++.. +..+|..+..++...|++++|.+.|.+. .|...|..++..+.+.|
T Consensus 1084 VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lG 1148 (1630)
T 1xi4_A 1084 VLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSG 1148 (1630)
T ss_pred HHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcC
Confidence 3333 5577888888877542 4667778888888888888888888553 36677777888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 004814 328 LLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFD 407 (729)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 407 (729)
++++|.+.+....+.. ++....+.++.+|++.+++++..... . + ++...|..+...|...|++++|..+|.
T Consensus 1149 kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~--~n~ad~~~iGd~le~eg~YeeA~~~Y~ 1219 (1630)
T 1xi4_A 1149 NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-G--PNNAHIQQVGDRCYDEKMYDAAKLLYN 1219 (1630)
T ss_pred CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-C--CCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888888887766654 23333334778888888777533322 1 1 566667778888888888888888887
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 408 ELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPD 487 (729)
Q Consensus 408 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~ 487 (729)
.. ..|..+..++++.|+++.|.+.+++. .+..+|..+..+|...|++..|......+ ..+
T Consensus 1220 kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~ 1279 (1630)
T 1xi4_A 1220 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVH 1279 (1630)
T ss_pred hh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcC
Confidence 74 36777888888888888888888766 25677888888888888888777766542 225
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCC----CCCCHHHH
Q 004814 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKL--GSLEEANELLRKMVGDG----FIPDHITY 561 (729)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~----~~p~~~~~ 561 (729)
+..+..++..|.+.|.+++|+.+++..+... +.....|+.+...+++. ++..++.+.|..-.... ..-+...|
T Consensus 1280 ~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW 1358 (1630)
T 1xi4_A 1280 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLW 1358 (1630)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHH
Confidence 6666677888888888888888887777654 44455666666666654 34445555554332210 00134567
Q ss_pred HHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCChhhHHHHHHHHHHcC
Q 004814 562 TSIIHASLEMGDLRRGRDLF-------------NNMLRKGLSPTLVTYTVLIHAHAARG 607 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~g 607 (729)
..+...|.+.|+++.|.... ++.+.+ ..|...|...+.-|....
T Consensus 1359 ~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1359 AELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 77777888888888777322 222212 456667766666666444
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=6.4e-17 Score=177.00 Aligned_cols=431 Identities=12% Similarity=0.021 Sum_probs=306.6
Q ss_pred HHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004814 196 FNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS 275 (729)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 275 (729)
|++.++..+. |...|..++. +.+.|++++|..+|+++++.. |.+...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 4555665544 7788888888 478899999999999999864 667778999999999999999999999999886 4
Q ss_pred CCHHHHHHHHHHH-HhCCCHHHHHH----HHHHHHhC-CCc-cChhhHHHHHHHHHh---------CCCHHHHHHHHHHH
Q 004814 276 PNGVTYNVLITGF-SRNGELEQARG----LIRDMLKL-GLK-VSAHSYNPIICGYSE---------KGLLVEALNLEEEM 339 (729)
Q Consensus 276 p~~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 339 (729)
|+...|...+... ...|+.++|.+ +|++.++. |.. .+...|...+..... .|++++|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6877777777533 45677776665 66666543 433 345677777776554 67788888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH------hhCC
Q 004814 340 VTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDEL------RSRN 413 (729)
Q Consensus 340 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m------~~~~ 413 (729)
.+....+....|..........|. ..+..+ +. ...+++++|..++.++ .+..
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred HhchhhhHHHHHHHHHHHHHhhch-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 773111111223222221111111 111111 11 1234566777766652 2221
Q ss_pred ---CCCC--------HhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cC
Q 004814 414 ---LVPT--------VVTYNTLIDGLCRY----GDL----EVAQQLKENMINQGILPDVITYTIMVNGSCK-------MG 467 (729)
Q Consensus 414 ---~~~~--------~~~~~~ll~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g 467 (729)
++|+ ...|...+...... ++. ..+..+|++++... +.+...|..++..+.+ .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 2343 24555555433322 232 47888999998863 5678899999888876 79
Q ss_pred CHH-------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 004814 468 NLS-------MAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDL-ITYNVLVHGLCKLGSL 539 (729)
Q Consensus 468 ~~~-------~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~-~~~~~li~~~~~~g~~ 539 (729)
+++ +|..++++.++.-.+.+...+..++..+.+.|++++|..+++.+++.. +.+. ..|..++..+.+.|++
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~ 372 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGI 372 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCH
Confidence 987 999999999873223357788889999999999999999999999863 3343 5899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHA-SLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSE 618 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 618 (729)
++|.++|++.++.... +...|...+.. +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|++
T Consensus 373 ~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 373 KSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999999986432 33333332222 346899999999999998874 55688999999999999999999999999
Q ss_pred HHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 619 MQVKGI-RP--NVITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 619 ~~~~g~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
+...+. .| ....|...+......|+.+.+..+++++.+.
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998642 22 2447888888889999999999999999875
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.5e-18 Score=175.72 Aligned_cols=287 Identities=11% Similarity=-0.005 Sum_probs=177.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+...+..++..+...|++++|..+++++++.+|. +...+..++..+...|++++|...++++.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 83 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---------------HASCLPVHIGTLVELNKANELFYLSHKLV 83 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CTTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------ChhhHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345555666777777777777777777777776654 23344455666677777777777777777
Q ss_pred HCCCCCChHhHHHHHHHHHHCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNG-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGV 279 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 279 (729)
+..+. +...+..+...+...| ++++|...|+++.+.. +.+..+|..+...+...|++++|.+.|+++.+.. +.+..
T Consensus 84 ~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 160 (330)
T 3hym_B 84 DLYPS-NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHL 160 (330)
T ss_dssp HHCTT-STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSH
T ss_pred HhCcC-CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHH
Confidence 76543 5566667777777777 7777777777777654 4456667777777777777777777777776652 22345
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCCCHHHH
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRG--------VAPTLATY 351 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------~~p~~~~~ 351 (729)
.+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+.. .+....++
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 239 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHH
Confidence 55666677777777777777777776654 3355666666666666677776666666665521 02233455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 004814 352 NILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGL 428 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~ 428 (729)
..+...+.+.|++++|.+.+++..+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 240 ~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 240 NNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 5566666666666666666666555433 344555555555555555555555555554432 12334444444443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=2.5e-18 Score=178.78 Aligned_cols=304 Identities=15% Similarity=0.022 Sum_probs=142.8
Q ss_pred HcCCCHHHHHH-HHHHHHHCCCC---CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 184 TKKSMVEQCLL-VFNKMLRNGLL---PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 184 ~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
...|++++|+. .|++..+..+. .+...+..+...+.+.|++++|...|+++.+.. +.+..++..++..+.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34456666666 66655543221 123445666666667777777777777766654 44566666666777777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 260 QEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEM 339 (729)
Q Consensus 260 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (729)
++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+... .. .
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------h
Confidence 77777776666552 335566666666667777777777777766665322 22221111000 00 0
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH
Q 004814 340 VTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-DIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV 418 (729)
Q Consensus 340 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~ 418 (729)
.. ....+..+.. +...|++++|.+.|+++....+.. +..++..+...+...|++++|+..++++.... +.+.
T Consensus 179 ----~~-~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~ 251 (368)
T 1fch_A 179 ----AG-LGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDY 251 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred ----hc-ccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCH
Confidence 00 0000001111 114444444544444444433211 24444444445555555555555554444432 1233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------CH
Q 004814 419 VTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQP----------DR 488 (729)
Q Consensus 419 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~----------~~ 488 (729)
.++..+...+...|++++|...++++++.. +.+..++..+...|.+.|++++|...++++.+..... ..
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 444445555555555555555555544432 2334445555555555555555555555544431110 13
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQE 512 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~ 512 (729)
.++..+..++...|+.++|..++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 444555555555555555554443
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=6.7e-18 Score=175.60 Aligned_cols=263 Identities=13% Similarity=-0.015 Sum_probs=163.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 004814 421 YNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK 500 (729)
Q Consensus 421 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 500 (729)
+..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|.+.++++.+... .+..++..+...+..
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTN 144 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 4444444444444444444444444432 23344444444444444444444444444444321 133444444444444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH----------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 004814 501 LGDTSEAYRLQEEMLAKGFPPDLITYN----------------VLVHGLCKLGSLEEANELLRKMVGDGFIP-DHITYTS 563 (729)
Q Consensus 501 ~g~~~~A~~l~~~~~~~~~~~~~~~~~----------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~ 563 (729)
.|++++|...++.+.+.. +.+...+. .+.. +...|++++|...++++++..+.. +..++..
T Consensus 145 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGS-LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHH-HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHH-HhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 444444444444444432 11111111 2222 337788888888888887764321 4677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR 643 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 643 (729)
+...+...|++++|...++++.+.. +.+..+|..++..+...|++++|+..++++.+.. +.+...+..++.+|.+.|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 8888888888888888888887764 4567788888888888888888888888887753 2356778888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 644 IDQAYGLFIDMEEEGILPN-----------KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 644 ~~~A~~~~~~m~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+++|...++++.+.. +.+ ..+|..++.++...|++++|..++++.+
T Consensus 301 ~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 301 HREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 888888888887642 112 5678888888888888888888776544
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=1.2e-17 Score=173.59 Aligned_cols=266 Identities=11% Similarity=-0.021 Sum_probs=188.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..++..+.+.|++++|...+++++..+|. +..++..++.+|.+.|++++|+..|+++++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 128 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG---------------DAEAWQFLGITQAENENEQAAIVALQRCLEL 128 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4556888899999999999999999999888776 4677888999999999999999999999887
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhH----------HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTY----------NTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
.+. +..++..++.+|...|++++|...|+++.+.. +.+...+ ..+...+.+.|++++|.+.|+++.+.
T Consensus 129 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 129 QPN-NLKALMALAVSYTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 654 67788888889999999999999999887753 2222222 33467777788888888888887765
Q ss_pred CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 273 GCS-PNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATY 351 (729)
Q Consensus 273 ~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 351 (729)
... ++..++..+...+.+.|++++|.+.++++++.. +.+..+|..+...|...|++++|++.|+++.+..+. +..++
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~ 284 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSR 284 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHH
Confidence 211 156677777777888888888888888877764 335667777777777777777777777777765332 46677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CCHhHHHHHHHHHHHcCCHHHHHHHHH
Q 004814 352 NILIYGLCKWGRVSDARHRFFEMLRKNVI-----------PDIISYNTLLYGYCRSGNIGEAFLLFD 407 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~ 407 (729)
..+...|.+.|++++|.+.|+++++..+. .+...|..+..++...|+.+.+..+..
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777777776653210 024556666666666666665555443
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=3.6e-17 Score=169.96 Aligned_cols=275 Identities=11% Similarity=-0.045 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 384 ISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGS 463 (729)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (729)
..+..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++++.. +.+..++..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555555555555555555432 2244455555555555555555555555555442 23445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 464 CKMGNLSMAREFFNEMLRKGLQPDRF-AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEA 542 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 542 (729)
...|++++|+..++++.+.. |+.. .+..+ ......+..+...+...|++++|
T Consensus 144 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHHHH
Confidence 55555555555555554431 1100 00000 01123344557778888888999
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 543 NELLRKMVGDGFI-PDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 543 ~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
...++++++..+. ++..++..+...+...|++++|.+.++++.+.. +.+..+|..++.+|...|++++|+..|+++.+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999888876432 157788888888889999999999999888774 55688888999999999999999999999888
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 622 KGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI---L--------PNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 622 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
.. +.+..++..++.+|.+.|++++|...++++.+... . .+...|..+..++...|+.+.|....++-
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 53 23577888899999999999999999998887320 0 02567888899999999998888876653
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=3.1e-17 Score=166.68 Aligned_cols=378 Identities=12% Similarity=0.089 Sum_probs=125.7
Q ss_pred HCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 004814 220 DNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARG 299 (729)
Q Consensus 220 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 299 (729)
+.|+.++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 444455555555554 12235555555555555555555555331 244455555555555555555555
Q ss_pred HHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 300 LIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNV 379 (729)
Q Consensus 300 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 379 (729)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~---------------------------------- 119 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------G---------------------------------- 119 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------C----------------------------------
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------C----------------------------------
Confidence 44444332 2234444455555555555555444442 1
Q ss_pred CCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 380 IPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIM 459 (729)
Q Consensus 380 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 459 (729)
|+..+|+.++..|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..+
T Consensus 120 -pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v 183 (449)
T 1b89_A 120 -PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 183 (449)
T ss_dssp -C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHH
Confidence 33344444444444444455554444433 24444555555555555555555444 144455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 004814 460 VNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLG-- 537 (729)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-- 537 (729)
+.+|...|+++.|......+ ...+.....++..|.+.|.+++|+.+++..+... +....+|+.+...|++-.
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHH
Confidence 55555555555553332221 1122223344455555555555555555554433 333444555544444431
Q ss_pred CHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHCCCCCChhhHHH
Q 004814 538 SLEEANELLRKMVGDGFIP------DHITYTSIIHASLEMGDLRRGRDLF-------------NNMLRKGLSPTLVTYTV 598 (729)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~~ 598 (729)
+..+.++.|..-+ +++| +...|..+...|...++++.|.... .+++.+ ..+...|-.
T Consensus 258 k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~k--v~n~elyYk 333 (449)
T 1b89_A 258 KMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYR 333 (449)
T ss_dssp HHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHH--CSSTHHHHH
T ss_pred HHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhc--hhHHHHHHH
Confidence 2222222222111 1111 2234555555556666666554432 222211 345556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGN 678 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 678 (729)
.+..|... .+ +++.-+...... +.|. +..+..+.+.|.+.-+..++..+...+ +..+-.++-+.|....+
T Consensus 334 ai~fyl~~-~p-~~l~~ll~~l~~--~ld~---~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed 403 (449)
T 1b89_A 334 AIQFYLEF-KP-LLLNDLLMVLSP--RLDH---TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 403 (449)
T ss_dssp HHHHHHHH-CG-GGHHHHHHHHGG--GCCH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-CH-HHHHHHHHHHHh--ccCc---HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhh
Confidence 66666521 12 222222222221 1222 455566677777777777776666532 45555667777788888
Q ss_pred HHHHHHHHHH
Q 004814 679 WQEALRLYKE 688 (729)
Q Consensus 679 ~~~A~~~~~~ 688 (729)
++.-+..++.
T Consensus 404 ~~~lr~si~~ 413 (449)
T 1b89_A 404 YQALRTSIDA 413 (449)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7765555443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.4e-16 Score=161.94 Aligned_cols=221 Identities=11% Similarity=0.106 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+.+++...+. .+++.+.+.++.+|
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y 104 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHH
Confidence 35555666666666666666666442 24445555555555566666666655444442 23345555566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHH
Q 004814 254 CKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEAL 333 (729)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 333 (729)
.+.|+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.
T Consensus 105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV 168 (449)
T 1b89_A 105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 168 (449)
T ss_dssp ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence 66666665555552 244455566666666666666666666544 24555566666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCC
Q 004814 334 NLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRN 413 (729)
Q Consensus 334 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 413 (729)
+.++++ .++.+|..++.+|+..|+++.|...... +..++.-...++..|.+.|++++|..+++......
T Consensus 169 ea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le 237 (449)
T 1b89_A 169 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 237 (449)
T ss_dssp HHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST
T ss_pred HHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc
Confidence 655555 1455555555666666665555333322 11222223345555555555555555555554432
Q ss_pred CCCCHhhHHHHHHHHHh
Q 004814 414 LVPTVVTYNTLIDGLCR 430 (729)
Q Consensus 414 ~~~~~~~~~~ll~~~~~ 430 (729)
+.....|+-|.-.|++
T Consensus 238 -~ah~~~ftel~il~~k 253 (449)
T 1b89_A 238 -RAHMGMFTELAILYSK 253 (449)
T ss_dssp -TCCHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 2233444444444433
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=6.4e-17 Score=164.94 Aligned_cols=265 Identities=11% Similarity=-0.031 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
...+..++..+...|++++|...++++++.+|. +...+..++.+|.+.|++++|...|+++.+..
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---------------REEAWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345667778888889999999999888887665 46677788888888999999999999888875
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM--------------LD-SFCKEGEMQEALELLWE 268 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~ 268 (729)
+. +..++..+...+...|++++|.+.|+++.+.. +.+...+..+ .. .+...|++++|.+.+++
T Consensus 86 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 163 (327)
T 3cv0_A 86 PK-DIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163 (327)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHH
Confidence 44 67778888888888888888888888888764 3334444433 22 35566677777777777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 004814 269 MQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTL 348 (729)
Q Consensus 269 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 348 (729)
+.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+..+. +.
T Consensus 164 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 240 (327)
T 3cv0_A 164 ALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YV 240 (327)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 76652 3356666677777777777777777777776654 234566666666777777777777777666654322 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 349 ATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP-----------DIISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
..+..+...+.+.|++++|.+.++++....+.. +...|..+..++.+.|+.++|..++++
T Consensus 241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 566666666666666666666666665543211 345556666666666666666665543
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.2e-15 Score=164.55 Aligned_cols=298 Identities=11% Similarity=-0.073 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHH----cCCHH
Q 004814 328 LLVEALNLEEEMVTRGVAPTLATYNILIYG---LCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCR----SGNIG 400 (729)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 400 (729)
++++|++.|++..+..+. +...+..+... +...++.++|++.+++.++.++ .+...+..+...+.. .|+++
T Consensus 153 ~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------C
T ss_pred cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHH
Confidence 344555555554443221 22333322222 2233444555555555544332 233333333333322 34455
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 401 EAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEML 480 (729)
Q Consensus 401 ~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (729)
+|.+.+++..... +.+..++..+...+...|++++|...++++++.. +.+..++..+...|...+....+...
T Consensus 231 ~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~----- 303 (472)
T 4g1t_A 231 EGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE----- 303 (472)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH-----
Confidence 5666665554432 2244455555666666666666666666665543 33444555444444321111000000
Q ss_pred HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-
Q 004814 481 RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHI- 559 (729)
Q Consensus 481 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~- 559 (729)
..........+..++|...++...+.+ +.+...+..+...+...|++++|.+.|++.++....+...
T Consensus 304 -----------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 304 -----------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred -----------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 000000111122445555555555542 4445556666666666666666666666666553332211
Q ss_pred -HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004814 560 -TYTSIIH-ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALING 637 (729)
Q Consensus 560 -~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 637 (729)
.+..+.. .....|+.++|+..+++.++. .|+..... +....+.+++++..+.. +.+..+|..++.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~ 439 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKN-GADSEALHVLAFL 439 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1222222 233556667777777666664 23322211 11233344455554432 2345567777777
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 004814 638 LCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~~g 658 (729)
|...|++++|++.|++.++.|
T Consensus 440 ~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 440 QELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHCC-------------
T ss_pred HHHcCCHHHHHHHHHHHHhcC
Confidence 777777777777777776643
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=1.6e-16 Score=161.89 Aligned_cols=279 Identities=10% Similarity=-0.048 Sum_probs=183.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 384 ISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGS 463 (729)
Q Consensus 384 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (729)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 344555555666666666666666655542 2244555555556666666666666666665543 33455555555566
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHH
Q 004814 464 CKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL-VH-GLCKLGSLEE 541 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~ 541 (729)
...|++++|.+.++++.+.... +...+..+... .++......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 6666666666666665554211 11111111000 0011111112 22 3667788889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 542 ANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 542 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
|...++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+
T Consensus 157 A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 157 CRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999988887653 367788888888999999999999999888764 55678888899999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 622 KGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILP-----------NKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 622 ~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.. +.+...+..++.+|...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++.+
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 63 3367788899999999999999999999988753111 36688889999999999999999887654
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.2e-15 Score=164.40 Aligned_cols=395 Identities=10% Similarity=-0.057 Sum_probs=256.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
.+....|+.++.++...|++++|+..++++++..+.. ...........+|..++.+|...|++++|...++++.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~------~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~ 121 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE------HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVK 121 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc------CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4456789999999999999999999999998753321 0000111245678899999999999999999999887
Q ss_pred HCC-----C-CC-ChHhHHHHHHHHHH--CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHH
Q 004814 201 RNG-----L-LP-DVKNCNRIIKVLRD--NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSF---CKEGEMQEALELLWE 268 (729)
Q Consensus 201 ~~~-----~-~~-~~~~~~~ll~~l~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~ 268 (729)
+.. . .+ ...++..+..++.+ .+++++|+..|++..+.. |.+...+..+..++ ...++.++|++.+++
T Consensus 122 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 122 HVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred HHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 531 1 11 24456666656655 456899999999998865 45566666666554 346778889999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 004814 269 MQGRGCSPNGVTYNVLITGFSR----NGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGV 344 (729)
Q Consensus 269 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (729)
..+.. +.+...+..+...+.. .|+.++|.+.+++..+.. +.+..++..+...|...|++++|.+.+++..+..+
T Consensus 201 al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 278 (472)
T 4g1t_A 201 AIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP 278 (472)
T ss_dssp HHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC
Confidence 87752 3356666666655544 467889999999988775 44778889999999999999999999999988644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHH
Q 004814 345 APTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTL 424 (729)
Q Consensus 345 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~l 424 (729)
. +..++..+...|...+....+.. ...........+..++|...+++..+.+ +.+..++..+
T Consensus 279 ~-~~~~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 340 (472)
T 4g1t_A 279 N-NAYLHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSIL 340 (472)
T ss_dssp T-CHHHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHH
T ss_pred C-hHHHHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhH
Confidence 3 56667777666643221111100 0001111112234677888888877654 3356678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 004814 425 IDGLCRYGDLEVAQQLKENMINQGILPDV--ITYTIMVN-GSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKL 501 (729)
Q Consensus 425 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 501 (729)
...+...|++++|...|++.++....+.. ..+..+.. .+...|+.++|+..|++.++. .|+......
T Consensus 341 g~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~-------- 410 (472)
T 4g1t_A 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK-------- 410 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH--------
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH--------
Confidence 88999999999999999998886533322 12233332 234678999999999999886 344322222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 004814 502 GDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGF 554 (729)
Q Consensus 502 g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 554 (729)
....+.++++..++.+ |.+..+|..+...|...|++++|++.|++.++.+.
T Consensus 411 -~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 411 -MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp -HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred -HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2234455566655553 67788999999999999999999999999988653
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=2.9e-16 Score=156.59 Aligned_cols=268 Identities=11% Similarity=0.035 Sum_probs=145.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 004814 429 CRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAY 508 (729)
Q Consensus 429 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 508 (729)
...|++..|+...+........+.......+.++|...|+++.|+..++.. -.|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 344555555555544332211111123344455555555555555544321 1334445555555555555666666
Q ss_pred HHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 509 RLQEEMLAKGF-PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 509 ~l~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 587 (729)
+.+++++..+. |.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 66666555442 33455555555666666666666666655 235556666666666666666666666666655
Q ss_pred CCCCChhhH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 004814 588 GLSPTLVTY---TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY 664 (729)
Q Consensus 588 ~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 664 (729)
. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|...++++++.. +.+..
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 3 332211 11122233346677777777776665 23456666666667777777777777777766653 44555
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCCCHHHHHHHHHhhhccchhhc
Q 004814 665 TYTILINENCNAGNWQE-ALRLYKEMLDREIEPDYCTHSALLLKQLDKDYKVH 716 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~pd~~~~~~ll~~~l~~~g~~~ 716 (729)
++..++..+...|+.++ +.+++++++ .+.|+.... .+...+.+.++
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~--~~~P~~~~~----~d~~~~~~~fd 282 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLK--DAHRSHPFI----KEYRAKENDFD 282 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH--HHCTTCHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH--HhCCCChHH----HHHHHHHHHHH
Confidence 66666666666666654 456666666 455654432 22344555554
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.73 E-value=1.3e-15 Score=151.82 Aligned_cols=275 Identities=14% Similarity=0.066 Sum_probs=175.3
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 392 GYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSM 471 (729)
Q Consensus 392 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (729)
-....|++.+|+..++................+.++|...|+++.|...++. .-+|+..++..+...+...++.++
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445666777766666554432111122334556667777777776665433 124556666666777777777777
Q ss_pred HHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 472 AREFFNEMLRKGLQPD-RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 472 A~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 550 (729)
|++.++++...+..|+ ...+..+...+.+.|++++|++.++. +.+...+..++..+.+.|++++|.+.++++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777766554343 34445555667777777777777765 4567777777778888888888888888877
Q ss_pred hCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 004814 551 GDGFIPDHITY---TSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN 627 (729)
Q Consensus 551 ~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 627 (729)
+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.++.++.+.|++++|...++++.+.. +-+
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~ 233 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGH 233 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 753 332211 122333444578888888888888763 6677788888888888888888888888887753 236
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQ-AYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRL 685 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 685 (729)
..++..++..+...|+.++ +.++++++.+. .|+.... .+...+.+.++++..-
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~---~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFI---KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHH---HHHHHHHHHHHHHHHH
Confidence 6777888888888888765 46788888774 3443322 2234455555555443
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=181.56 Aligned_cols=119 Identities=14% Similarity=0.108 Sum_probs=80.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHH
Q 004814 242 SIVTYNTMLDSFCKEGEMQEALELLWEMQG---RGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNP 318 (729)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 318 (729)
-..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345677777777777777777777766543 35677777777777777777777777777777777777777777777
Q ss_pred HHHHHHhCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 319 IICGYSEKGLL-VEALNLEEEMVTRGVAPTLATYNILIYGLCK 360 (729)
Q Consensus 319 li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 360 (729)
+|.++|+.|+. ++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 77777766663 5666677777766766676666666654443
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=182.37 Aligned_cols=153 Identities=14% Similarity=0.163 Sum_probs=128.4
Q ss_pred CChHhHHHHHHHHHHCCChhHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGE---FGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 206 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
.-..+||+++.+|++.|++++|.++|++|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||++|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467899999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 004814 283 VLITGFSRNGE-LEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT------LATYNILI 355 (729)
Q Consensus 283 ~li~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li 355 (729)
+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+.+ .++..+++ ..+..|+ +.+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 99999999998 5789999999999999999999999997666543 33333333 2344443 44555666
Q ss_pred HHHHhcCC
Q 004814 356 YGLCKWGR 363 (729)
Q Consensus 356 ~~~~~~g~ 363 (729)
+.|.+.+.
T Consensus 280 dl~s~d~~ 287 (1134)
T 3spa_A 280 DVYAKDGR 287 (1134)
T ss_dssp HHHCCCSC
T ss_pred HHHccCCC
Confidence 76666553
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.70 E-value=3e-15 Score=159.43 Aligned_cols=346 Identities=12% Similarity=-0.004 Sum_probs=194.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCCh---hHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFS---VKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
++..+.+.|++++|++.|+++.+.| +..++..+...|...|+. ++|..+|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666778888899999999888865 445556667777777777 8888888888753 56667777775555
Q ss_pred cC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCCCccChhhHHHHHHHHHhCC
Q 004814 256 EG-----EMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQ---ARGLIRDMLKLGLKVSAHSYNPIICGYSEKG 327 (729)
Q Consensus 256 ~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 327 (729)
.| ++++|...|++..+.|.. ..+..|...|...+..++ +.+.+......| +...+..+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 55 678888888888876532 256667777766654333 344444444433 4556667777777766
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc----CCHH
Q 004814 328 LLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWG---RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS----GNIG 400 (729)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~ 400 (729)
.++++.+......+.-...++..+..|...|.+.| +.++|++.|++..+.|. ++...+..+...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 44444333222222111123336667777777777 77777777777777765 5555555566666443 5777
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 004814 401 EAFLLFDELRSRNLVPTVVTYNTLIDG-L--CRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMG-----NLSMA 472 (729)
Q Consensus 401 ~A~~l~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 472 (729)
+|+..|++.. .| +...+..+... + ...++.++|..+|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 33 44555555555 3 34667777777777777665 5566666666665 44 67777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 004814 473 REFFNEMLRKGLQPDRFAYTTQIAGELK----LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCK----LGSLEEANE 544 (729)
Q Consensus 473 ~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~ 544 (729)
.+.|++.. . -+......+...|.. ..+.++|...++...+.| +......+...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 77776666 2 244555555555544 336666666666666554 23334444444443 235666666
Q ss_pred HHHHHHhCC
Q 004814 545 LLRKMVGDG 553 (729)
Q Consensus 545 ~~~~~~~~~ 553 (729)
+|+...+.|
T Consensus 380 ~~~~A~~~g 388 (452)
T 3e4b_A 380 FSQLAKAQD 388 (452)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHCC
Confidence 666666554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=8.1e-15 Score=143.59 Aligned_cols=240 Identities=13% Similarity=0.080 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC----HHHHH
Q 004814 454 ITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG--FPPD----LITYN 527 (729)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~~~~----~~~~~ 527 (729)
..+..+...+...|++++|+..++++.+.. .+...+..+..++...|++++|...++...+.. ..++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455555555555555555555555554 345555555555555555555555555554431 0111 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG 607 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 607 (729)
.+...+...|++++|...++++.+.. |+. ..+...|++++|...++++.... +.+...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 77888888888888888888887753 342 34566678888999988888764 445677888888899999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 608 RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYK 687 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 687 (729)
++++|...++++.+.. +.+...+..++.+|...|++++|...++++.+.. +.+...|..++.++.+.|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999988863 3367788899999999999999999999998864 5567788899999999999999999999
Q ss_pred HHHHCC----CCCCHHHHHHHHHh
Q 004814 688 EMLDRE----IEPDYCTHSALLLK 707 (729)
Q Consensus 688 ~m~~~~----~~pd~~~~~~ll~~ 707 (729)
++++.. ..|+.......+..
T Consensus 232 ~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 232 AARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHhChhhcCCCchHHHHHHHHH
Confidence 988321 22666555444343
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.67 E-value=3.1e-15 Score=142.34 Aligned_cols=199 Identities=14% Similarity=-0.027 Sum_probs=124.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+++...+..++.++.+.|++++|...++++++.+|. +...+..++.+|.+.|++++|+..|++++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al 66 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ---------------DPEALYWLARTQLKLGLVNPALENGKTLV 66 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677777788888888888888888888777766 46677777777888888888888888877
Q ss_pred HCCCCCChHhHHHHHHHHHHC-----------CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDN-----------GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEM 269 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 269 (729)
+..+. +...+..+..++.+. |++++|+..|++.++.. |.+..++..+..++...|++++|+..|++.
T Consensus 67 ~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 67 ARTPR-YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp HHCTT-CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCC-cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 76644 566677777777777 66666666666666543 344556666666666666666666666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 270 QGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEM 339 (729)
Q Consensus 270 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (729)
.+.. .+...+..+...+...|++++|...|+++++.. +.+...+..+...+...|++++|.+.+++.
T Consensus 145 l~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 145 LALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred Hhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6554 455666666666666666666666666666553 234555556666666666666666655543
No 40
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=7.2e-15 Score=156.48 Aligned_cols=378 Identities=10% Similarity=0.017 Sum_probs=185.9
Q ss_pred HHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 214 IIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM---QEALELLWEMQGRGCSPNGVTYNVLITGFSR 290 (729)
Q Consensus 214 ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 290 (729)
+...+.+.|++++|.++|++..+.| +..++..|...|...|+. ++|...|++..+. +...+..|...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5556666777777777777776644 344445555556666666 6777777666543 34444555554444
Q ss_pred CC-----CHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 291 NG-----ELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE---ALNLEEEMVTRGVAPTLATYNILIYGLCKWG 362 (729)
Q Consensus 291 ~g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 362 (729)
.| +.++|...|++..+.| +...+..|...|...+..++ +.+.+......| +...+..|...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 43 5566666666666654 22355555555554433222 222222222222 2223333334443333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC---CHHHHHH
Q 004814 363 RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYG---DLEVAQQ 439 (729)
Q Consensus 363 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~ 439 (729)
.++++. +++..+++..... ++..+..|...|...| +.++|.+
T Consensus 156 ~~~~~~-------------------------------~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~ 200 (452)
T 3e4b_A 156 TYDQHL-------------------------------DDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLK 200 (452)
T ss_dssp CGGGGH-------------------------------HHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcccCH-------------------------------HHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHH
Confidence 322222 2222222222221 2224555555555555 5566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHH
Q 004814 440 LKENMINQGILPDVITYTIMVNGSCKM----GNLSMAREFFNEMLRKGLQPDRFAYTTQIAG-E--LKLGDTSEAYRLQE 512 (729)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~ 512 (729)
.|++..+.| +++...+..+...|... ++.++|.+.|++.. . -+...+..+... + ...+++++|+..++
T Consensus 201 ~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 201 QMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred HHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 666666655 33444444455555433 46666666666655 2 233444444444 2 34666667777776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 004814 513 EMLAKGFPPDLITYNVLVHGLCKLG-----SLEEANELLRKMVGDGFIPDHITYTSIIHASLE----MGDLRRGRDLFNN 583 (729)
Q Consensus 513 ~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 583 (729)
+..+.| +...+..+...|. .| ++++|.+.|++.. .| +......+...|.. ..++++|...|++
T Consensus 276 ~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 276 NGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 666655 5556666666665 34 6777777777766 32 45556666665554 3377777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 584 MLRKGLSPTLVTYTVLIHAHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 584 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..+.| +......|...|.. ..+.++|...|+...+.|.. +.......+......++.++|..+.++..+
T Consensus 348 Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 348 AARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 77665 34455566666653 35777888888877776532 222222222222233456667777666554
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=1.6e-14 Score=137.35 Aligned_cols=197 Identities=17% Similarity=0.034 Sum_probs=111.8
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHA 567 (729)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (729)
...+..+...+.+.|++++|+..++..++.. |.+...+..+...+.+.|++++|...+++.++..+ .+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHH
Confidence 3344444444455555555555555554442 44455555555555555555555555555555432 244455555555
Q ss_pred HHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 568 SLEM-----------GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALIN 636 (729)
Q Consensus 568 ~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 636 (729)
+... |++++|...+++.++.. |.+...+..+..+|...|++++|+..|+++.+.. .+...+..++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 5555 77777777777776653 4456667777777777777777777777777665 46667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 637 GLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 637 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+|...|++++|+..++++.+.. +.+...+..+..++.+.|++++|+..+++..
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777653 4455666777777777777777777776654
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=5e-14 Score=145.18 Aligned_cols=249 Identities=8% Similarity=-0.017 Sum_probs=204.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCC-HHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSM-VEQCLLVFNKMLR 201 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~ 201 (729)
+..+|..+..++.+.|++++|+..+++++..+|. +..+|..+..+|.+.|+ +++|+..|+++++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---------------~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~ 160 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---------------NYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---------------CHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence 4577888888999999999999999999999887 57788999999999997 9999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
..+. +...|+.+..++...|++++|+..|+++++.. +.+..+|..+..++.+.|++++|+..|+++.+.. +-+...|
T Consensus 161 l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~ 237 (382)
T 2h6f_A 161 EQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVW 237 (382)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHH
Confidence 8766 78889999999999999999999999999876 6688899999999999999999999999999873 3477889
Q ss_pred HHHHHHHHh-CCCHHHH-----HHHHHHHHhCCCccChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 282 NVLITGFSR-NGELEQA-----RGLIRDMLKLGLKVSAHSYNPIICGYSEKG--LLVEALNLEEEMVTRGVAPTLATYNI 353 (729)
Q Consensus 282 ~~li~~~~~-~g~~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ 353 (729)
+.+...+.+ .|..++| .+.+++.++.. +-+..+|+.+...+...| ++++|++.+.++ +.. ..+...+..
T Consensus 238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~ 314 (382)
T 2h6f_A 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAF 314 (382)
T ss_dssp HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHH
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHH
Confidence 999999998 6665777 48888888765 336778888888888888 588888888887 332 336677888
Q ss_pred HHHHHHhcC---------CHHHHHHHHHHH-HHCCCCCCHhHHHHHHHHH
Q 004814 354 LIYGLCKWG---------RVSDARHRFFEM-LRKNVIPDIISYNTLLYGY 393 (729)
Q Consensus 354 li~~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~ 393 (729)
++..|.+.| ..++|+++|+++ .+.++ .....|..+...+
T Consensus 315 La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l 363 (382)
T 2h6f_A 315 LVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 888888764 257888888888 55442 3344555555444
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=4.8e-14 Score=138.00 Aligned_cols=225 Identities=13% Similarity=0.051 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCC--CC----hhhH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIK--PS----IVTY 246 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 246 (729)
...+..++..|...|++++|+..|+++++.. .+...+..+..++...|++++|...|+++.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567778888889999999999999988877 57788888888888999999999888888764311 11 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC
Q 004814 247 NTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK 326 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 326 (729)
..+...+.+.|++++|...|+++.+. .|+. ..+.+.|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888888888888888888888775 3442 23455567777777777777653 23455666667777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 004814 327 GLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLF 406 (729)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 406 (729)
|++++|.+.++++.+..+. +...+..+...+.+.|++++|.+.+++.++..+ .+...|..+...+...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 7777777777776665332 456666666666666666666666666665443 34555666666666666666666666
Q ss_pred HHHhh
Q 004814 407 DELRS 411 (729)
Q Consensus 407 ~~m~~ 411 (729)
++..+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=4e-14 Score=140.00 Aligned_cols=248 Identities=14% Similarity=0.002 Sum_probs=161.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHH
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPP--DLITYNVLVHGL 533 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~~~~~li~~~ 533 (729)
+......+...|++++|+..++++.+.... +...+..+..++...|++++|+..++..++....+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 334455556666666666666666655321 33355555566666666666666666666532111 123466777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 004814 534 CKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAF 613 (729)
Q Consensus 534 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 613 (729)
...|++++|.+.++++.+..+. +..++..+...+...|++++|.+.+++..+.. +.+...|..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777765432 55677777788888888888888888777663 455666777763444455888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCHHHHH
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRR---IDQAYGLFIDMEEEG-ILPN------KYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~l~~~~~~~g~~~~A~ 683 (729)
+.++++.+.. +.+...+..+..++...|+ .++|...++++.+.. -.|+ ..+|..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887753 2246677777777777777 777888888877631 1133 146777888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHhhh
Q 004814 684 RLYKEMLDREIEPDYCTHSALLLKQL 709 (729)
Q Consensus 684 ~~~~~m~~~~~~pd~~~~~~ll~~~l 709 (729)
+.+++++ .+.|+.......+....
T Consensus 242 ~~~~~al--~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 242 AAWKNIL--ALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHH--HHCTTCHHHHHHHC---
T ss_pred HHHHHHH--hcCccHHHHHHHhhhhh
Confidence 8888888 56676655555434333
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.62 E-value=8.5e-14 Score=143.44 Aligned_cols=250 Identities=10% Similarity=0.028 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 453 VITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGD-TSEAYRLQEEMLAKGFPPDLITYNVLVH 531 (729)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~~li~ 531 (729)
...|..+...+.+.|++++|++.++++++.... +...|..+...+...|+ +++|+..++++++.. |.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 345555556666666666666666666665322 35555666666666664 677777776666653 556777777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH-cCCHH
Q 004814 532 GLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA-RGRLE 610 (729)
Q Consensus 532 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 610 (729)
++...|++++|+..|+++++..+. +...|..+..++.+.|++++|++.++++++.. +.+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 777778888888888887776533 66777777777888888888888888887765 4567778888777777 55546
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------
Q 004814 611 LA-----FMYFSEMQVKGIRPNVITYNALINGLCRLR--RIDQAYGLFIDMEEEGILPNKYTYTILINENCNAG------ 677 (729)
Q Consensus 611 ~A-----~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g------ 677 (729)
+| +..++++++... -+...|+.+..++.+.| ++++|++.+.++ +. -+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477777777532 25667777777777777 578888888777 43 2445667778888887764
Q ss_pred ---CHHHHHHHHHHH-HHCCCCCCHHHHHHHHHhhhcc
Q 004814 678 ---NWQEALRLYKEM-LDREIEPDYCTHSALLLKQLDK 711 (729)
Q Consensus 678 ---~~~~A~~~~~~m-~~~~~~pd~~~~~~ll~~~l~~ 711 (729)
.+++|+++|+++ + .+.|+...+...++..|..
T Consensus 330 ~~~~~~~A~~~~~~l~~--~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAK--EKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--TTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH--HhCchhHHHHHHHHHHHHH
Confidence 258888888888 6 6777655444443555543
No 46
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.2e-12 Score=129.45 Aligned_cols=222 Identities=12% Similarity=-0.022 Sum_probs=147.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK----LGDTSEAYRLQEEMLAKGFPPDLITYN 527 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~~~~~~~~~~~~ 527 (729)
+..++..+...+...|++++|.+.|++..+. .+...+..+...+.. .+++++|+..+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555566666666666666666666652 234455555556666 666666666666666654 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004814 528 VLVHGLCK----LGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE----MGDLRRGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 528 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
.+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 677777777777776653 55666666667776 777777777777777654 45566666
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 600 IHAHAA----RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 600 ~~~~~~----~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 667766 777777777777777653 45666677777777 777777777777777754 2556667777
Q ss_pred HHHh----cCCHHHHHHHHHHHHH
Q 004814 672 ENCN----AGNWQEALRLYKEMLD 691 (729)
Q Consensus 672 ~~~~----~g~~~~A~~~~~~m~~ 691 (729)
.|.. .|++++|++.|+++++
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHcCCCcccCHHHHHHHHHHHHH
Confidence 7777 7777777777777773
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=2.7e-14 Score=141.37 Aligned_cols=251 Identities=12% Similarity=-0.020 Sum_probs=153.0
Q ss_pred HhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 135 IESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
...|++++|...++++++..+. +.+.+..++..++..|...|++++|+..|+++++..+. +..++..+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l 83 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRAL-----------TDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYL 83 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccc-----------cCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 3446677777777777665211 00124566777778888888888888888888776544 56777777
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 004814 215 IKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGEL 294 (729)
Q Consensus 215 l~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 294 (729)
+.++...|++++|...|+++.+.. +.+..++..+...+.+.|++++|...|+++.+. .|+.......+..+...|++
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCH
Confidence 777888888888888888777754 445677777777788888888888888777764 33433333444444556777
Q ss_pred HHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 295 EQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAP---TLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 295 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
++|...+++..... +++...+ .++..+...++.++|.+.+++........ +...+..+...+.+.|++++|...|
T Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777666553 2233333 35566666666777777776665432110 1345555666666666666666666
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHH
Q 004814 372 FEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLF 406 (729)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 406 (729)
++.+... |+. +.....++...|++++|++.+
T Consensus 239 ~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 239 KLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 6665543 211 122233444555555555443
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.61 E-value=1.7e-11 Score=134.78 Aligned_cols=454 Identities=9% Similarity=-0.014 Sum_probs=268.3
Q ss_pred HHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHH
Q 004814 189 VEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE---MQEALEL 265 (729)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~ 265 (729)
..+-+..|++.+..++. |..+|..++..+.+.+.++.+..+|++++..- |.....|...+..-.+.|+ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~np~-d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPT-DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34455666777776665 88888888888888888888888888888753 5667778888888888888 8888888
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhCCCH--------HHHHHHHHHHHh-CCC-cc-ChhhHHHHHHHHHh--------
Q 004814 266 LWEMQGRG-CSPNGVTYNVLITGFSRNGEL--------EQARGLIRDMLK-LGL-KV-SAHSYNPIICGYSE-------- 325 (729)
Q Consensus 266 ~~~m~~~~-~~p~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~~-~~~~~~~li~~~~~-------- 325 (729)
|++..... ..|++..|...+....+.++. +...++|+..+. .|. .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 88888762 137777777777655554443 334467776664 354 33 34577777765432
Q ss_pred -CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHH
Q 004814 326 -KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 326 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 404 (729)
.++++.+.++|+.++......-..+|......--..+. ..+.+++.+. ..+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHHH
Confidence 33456677777777753111111223221111100011 0111111110 112223333
Q ss_pred HHHHHhh--CCC----C-----------C--C------HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCC
Q 004814 405 LFDELRS--RNL----V-----------P--T------VVTYNTLIDGLCRYG-------DLEVAQQLKENMINQGILPD 452 (729)
Q Consensus 405 l~~~m~~--~~~----~-----------~--~------~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~~~ 452 (729)
.+.++.. .++ + | + ...|...+.---..+ ..+.+..+|++++.. ++-+
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~ 342 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFA 342 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTC
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCC
Confidence 3332211 000 0 0 0 012222222211111 123445667777665 3556
Q ss_pred HHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----------CCC
Q 004814 453 VITYTIMVNGSCKMGNLSMAR-EFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG----------FPP 521 (729)
Q Consensus 453 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~----------~~~ 521 (729)
...|...+..+.+.|+.++|. ++|++.... ++.+...+...+....+.|+++.|..+|+.++... .|.
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 777777777777778777785 888887764 22344455666777777888888888888776531 121
Q ss_pred -----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 004814 522 -----------DLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEM-GDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 522 -----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 589 (729)
...+|...+....+.|..+.|..+|.++++.........|...+..-.+. ++.+.|.++|+..++. .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-F 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-H
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-C
Confidence 12357777777777788888888888887751111223333333333333 4478888888888776 3
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004814 590 SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667 (729)
Q Consensus 590 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 667 (729)
+.+...|...++.....|+.+.|..+|+++......+ ....|...+..-.+.|+.+.+.++.+++.+. .|+.....
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~ 578 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLE 578 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHH
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHH
Confidence 4566667777777777888888888888887763221 2346777777777888888888888888875 34433444
Q ss_pred HHHH
Q 004814 668 ILIN 671 (729)
Q Consensus 668 ~l~~ 671 (729)
.+++
T Consensus 579 ~f~~ 582 (679)
T 4e6h_A 579 EFTN 582 (679)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.60 E-value=1e-13 Score=136.98 Aligned_cols=228 Identities=11% Similarity=-0.004 Sum_probs=98.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHH
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV----TYNTMLDSFC 254 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~ 254 (729)
.+..|...|++++|+..|+++++..+. +...+..+..++...|++++|+..|+++.+.+ ++.. +|..+...+.
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHH
Confidence 334444444444444444444443322 23344444444444444444444444444421 1111 2444444444
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
..|++++|.+.|++..+.. +.+..++..+...+...|++++|.+.+++.++.. +.+..++..+...+...+++++|.+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444431 1233344444444444444444444444444432 2233344444412222235555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HhHHHHHHHHHHHcCCHHHHHH
Q 004814 335 LEEEMVTRGVAPTLATYNILIYGLCKWGR---VSDARHRFFEMLRKN-VIPD------IISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 335 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~g~~~~A~~ 404 (729)
.|+++.+..+. +...+..+...+...|+ +++|...+++..+.. ..|+ ..+|..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 55544443221 23444444444444444 444554444444321 0011 1344455555555555555555
Q ss_pred HHHHHhhC
Q 004814 405 LFDELRSR 412 (729)
Q Consensus 405 l~~~m~~~ 412 (729)
.+++..+.
T Consensus 243 ~~~~al~~ 250 (272)
T 3u4t_A 243 AWKNILAL 250 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 55555543
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=1.9e-12 Score=127.96 Aligned_cols=222 Identities=11% Similarity=-0.001 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHc----CCCHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTK----KSMVEQCLLVFNK 198 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 198 (729)
++.++..+...+...|++++|...|+++++.+ +...+..+...|.. .|++++|+..|++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 67 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAK 67 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence 44555555555555555555555555555421 12344445555555 5555555555555
Q ss_pred HHHCCCCCChHhHHHHHHHHHH----CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 004814 199 MLRNGLLPDVKNCNRIIKVLRD----NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK----EGEMQEALELLWEMQ 270 (729)
Q Consensus 199 ~~~~~~~~~~~~~~~ll~~l~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~ 270 (729)
..+.+ +..++..+...+.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|...|++..
T Consensus 68 a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 68 ACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 55543 44455555555555 555555555555555532 44455555555555 555555555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHC
Q 004814 271 GRGCSPNGVTYNVLITGFSR----NGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSE----KGLLVEALNLEEEMVTR 342 (729)
Q Consensus 271 ~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 342 (729)
+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|++.+++..+.
T Consensus 142 ~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 443 33444444444444 455555555555555443 23444444444444 45555555555544443
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 004814 343 GVAPTLATYNILIYGLCK----WGRVSDARHRFFEMLR 376 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~ 376 (729)
+ +...+..+...|.+ .+++++|.+.|++..+
T Consensus 216 ~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 216 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 2 13334444444444 4444444444444444
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=4.4e-14 Score=139.85 Aligned_cols=246 Identities=11% Similarity=-0.007 Sum_probs=196.2
Q ss_pred CChHHHHHHHHHhhhCCCC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHH
Q 004814 102 EKPRIALRFFRWVETQPGV--KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLL 179 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~--~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 179 (729)
++++.|+..|+.+...... +.+..++..++.++...|++++|...+++++..+|. +..++..+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~l 83 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---------------MPEVFNYL 83 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---------------CHHHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---------------cHHHHHHH
Confidence 5688999999988765221 236788999999999999999999999999998776 46788899
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 004814 180 LLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEM 259 (729)
Q Consensus 180 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (729)
+.+|...|++++|+..|+++++..+. +..++..+..++.+.|++++|...|+++.+.. |+.......+..+...|++
T Consensus 84 a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 84 GIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCH
Confidence 99999999999999999999997654 67889999999999999999999999998864 4444445555666778999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc---cChhhHHHHHHHHHhCCCHHHHHHHH
Q 004814 260 QEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK---VSAHSYNPIICGYSEKGLLVEALNLE 336 (729)
Q Consensus 260 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (729)
++|...+++.... .+++...+. ++..+...++.++|.+.++++.+.... .+..++..+...|...|++++|.+.|
T Consensus 161 ~~A~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 238 (275)
T 1xnf_A 161 KQAKEVLKQHFEK-SDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238 (275)
T ss_dssp HHHHHHHHHHHHH-SCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999888775 244444444 677788888999999999998765321 12578899999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 337 EEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 337 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
+++....+. + +......+...|++++|++.+
T Consensus 239 ~~al~~~p~-~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 239 KLAVANNVH-N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHTTCCT-T---CHHHHHHHHHHHHHHHC----
T ss_pred HHHHhCCch-h---HHHHHHHHHHHHHHHhhHHHH
Confidence 999986422 3 233455677888888888765
No 52
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=3.5e-11 Score=132.27 Aligned_cols=443 Identities=8% Similarity=-0.016 Sum_probs=245.5
Q ss_pred ChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHH
Q 004814 139 LLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVL 218 (729)
Q Consensus 139 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l 218 (729)
...+-...+++.+..+|. +...|..++..+.+.+.++.+..+|++++..-+. ....|...+..-
T Consensus 47 ~~~d~i~~lE~~l~~np~---------------d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~-~~~lW~~Yi~~E 110 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT---------------DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL-MANIWCMRLSLE 110 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC---------------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 345566778888888876 6888999999999999999999999999987443 677788888888
Q ss_pred HHCCC---hhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-CCC-HHHHHH
Q 004814 219 RDNGF---SVKAREVYRMMGEFG-IKPSIVTYNTMLDSFCKEGEM--------QEALELLWEMQG-RGC-SPN-GVTYNV 283 (729)
Q Consensus 219 ~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~ 283 (729)
.+.|. ++.+..+|++.+... .+|++..|...+....+.++. +...++|+.... .|. .++ ...|..
T Consensus 111 ~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~ 190 (679)
T 4e6h_A 111 FDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNE 190 (679)
T ss_dssp HTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred HhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 88898 999999999999864 138888999888877666553 334578877654 455 554 467877
Q ss_pred HHHHHH---------hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 284 LITGFS---------RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNIL 354 (729)
Q Consensus 284 li~~~~---------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 354 (729)
.+.... ..++++.++.+|++++.........+|......--..+.. .+.+++.+
T Consensus 191 Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~-~a~~~~~e---------------- 253 (679)
T 4e6h_A 191 YLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQL-TARRHIGE---------------- 253 (679)
T ss_dssp HHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTT-THHHHHHH----------------
T ss_pred HHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcc-hHHHHHHH----------------
Confidence 776543 2345788999999998642221123332222111110100 01111100
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--CCC----C-----------C--C------HhHHHHHHHHHHHcC-------CHHHH
Q 004814 355 IYGLCKWGRVSDARHRFFEMLR--KNV----I-----------P--D------IISYNTLLYGYCRSG-------NIGEA 402 (729)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~~~~--~~~----~-----------~--~------~~~~~~li~~~~~~g-------~~~~A 402 (729)
...+++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+
T Consensus 254 -----~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv 328 (679)
T 4e6h_A 254 -----LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARM 328 (679)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHH
T ss_pred -----hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHH
Confidence 00112222222222110 000 0 0 0 122333333222221 01233
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 403 FLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQ-QLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLR 481 (729)
Q Consensus 403 ~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (729)
..+|++.... .+-+...|...+..+...|+.++|. +++++.+.. ++.+...|...+....+.|++++|.++|+++++
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455555443 2224455555555555556655564 666666553 244455555555555666666666666666554
Q ss_pred CCC---------CCC------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CH
Q 004814 482 KGL---------QPD------------RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLG-SL 539 (729)
Q Consensus 482 ~g~---------~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g-~~ 539 (729)
... .|+ ...|...+....+.|..+.|..+|....+.-.......|...+..-.+.+ +.
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCH
Confidence 210 021 22455555555566666666666666665410112223332222222333 36
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHH
Q 004814 540 EEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSP--TLVTYTVLIHAHAARGRLELAFMYFS 617 (729)
Q Consensus 540 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 617 (729)
+.|..+|+..++.- ..+...+...+......|+.+.|..+|+..+....++ ....|...+..-.+.|+.+.+..+.+
T Consensus 487 e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666542 2244455555665566666666666666666553111 23456666665566666666766666
Q ss_pred HHHHC
Q 004814 618 EMQVK 622 (729)
Q Consensus 618 ~~~~~ 622 (729)
++.+.
T Consensus 566 R~~~~ 570 (679)
T 4e6h_A 566 RFFEK 570 (679)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66664
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.9e-13 Score=130.46 Aligned_cols=202 Identities=14% Similarity=0.018 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
..++..++..|...|++++|+..|+++++..+. +...+..+...+...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 566777788888888888888888888876543 56677777788888888888888888877654 4466777777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE 331 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 331 (729)
+...|++++|.+.|+++.+.+..| +...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888887777632233 34566667777777777777777777777654 2345666667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 332 ALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 332 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 378 (729)
|.+.++++.+... .+...+..+...+.+.|+.++|.+.++++.+..
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 7777777665433 245556666666666677777766666666543
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=6.3e-13 Score=129.68 Aligned_cols=202 Identities=10% Similarity=-0.071 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
...|..++.++...|++++|...+++++..+|. +..++..++.+|.+.|++++|++.|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---------------SADAHAALAVVFQTEMEPKLADEEYRKALASD 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 567788888999999999999999999988765 46788899999999999999999999999876
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP-SIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
+. +...+..+...+...|++++|.+.|+++.+.+..| +...+..+...+.+.|++++|.+.|+++.+.. +.+...+.
T Consensus 102 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 179 (252)
T 2ho1_A 102 SR-NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVAL 179 (252)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred cC-cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHH
Confidence 54 77888899999999999999999999998832233 56788999999999999999999999998863 34678899
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 004814 283 VLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRG 343 (729)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (729)
.+...+...|++++|...++++.+.. +.+...+..+...+...|+.++|.+.++++.+..
T Consensus 180 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 180 EMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999999999999999998865 3577888999999999999999999999998864
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.58 E-value=9.4e-14 Score=134.62 Aligned_cols=205 Identities=16% Similarity=0.156 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 489 FAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHAS 568 (729)
Q Consensus 489 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 568 (729)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHH
Confidence 344445555666666666666666666542 44566677777777777777777777777766542 3566677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 648 (729)
...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.+.|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777888877777777664 4566677777777788888888888888777652 235667777778888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 649 GLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 649 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
..++++.+.. +.+..++..++.++...|++++|.+.+++++ ...|+...
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~--~~~p~~~~ 228 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI--DIQPDHML 228 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH--HHCTTCHH
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH--ccCcchHH
Confidence 8888877753 4456677778888888888888888888887 45565443
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=1.1e-12 Score=125.18 Aligned_cols=203 Identities=11% Similarity=-0.004 Sum_probs=145.7
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+..++..++..|...|++++|+..|+++.+..+. +...+..+...+...|++++|.+.|+++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 5667778888888888888888888888876543 56677778888888888888888888887754 456777788888
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 252 SFCKE-GEMQEALELLWEMQGRGCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 252 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
.+... |++++|...++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 888888888888777322333 4567777777778888888888887777654 23466666777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRK 377 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 377 (729)
++|.+.++++.+..+..+...+..+...+...|+.++|...++.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 777777777666533135555666666666666666666666666543
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=1e-13 Score=134.44 Aligned_cols=201 Identities=11% Similarity=0.003 Sum_probs=106.9
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+..+|..++..+...|++++|...+++++..+|. +..++..++..|.+.|++++|+..|+++.+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 86 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---------------DAIPYINFANLLSSVNELERALAFYDKALEL 86 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4455566666666677777777777766665544 3455666666666677777777777666665
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
.+. +...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.+.++++.+. .+.+...+.
T Consensus 87 ~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~ 163 (243)
T 2q7f_A 87 DSS-AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL-NENDTEARF 163 (243)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred CCc-chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccHHHHH
Confidence 433 45556666666666666666666666665543 345555666666666666666666666666554 123455555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 283 VLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
.+...+.+.|++++|.+.++++.+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 164 QFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55566666666666666666655543 223445555555555555555555555555543
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=8.4e-13 Score=126.06 Aligned_cols=205 Identities=10% Similarity=-0.063 Sum_probs=176.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+..++..++..+...|++++|...+++++...|. +..++..++..|...|++++|...++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 69 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---------------NELAWLVRAEIYQYLKVNDKAQESFRQAL 69 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---------------chHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 346788899999999999999999999999988765 46678889999999999999999999999
Q ss_pred HCCCCCChHhHHHHHHHHHHC-CChhHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDN-GFSVKAREVYRMMGEFGI-KPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNG 278 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~-g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 278 (729)
+..+. +..++..++..+... |++++|...|+++.+.+. +.+..++..+...+.+.|++++|...|+++.+.. +.+.
T Consensus 70 ~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 147 (225)
T 2vq2_A 70 SIKPD-SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFP 147 (225)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HhCCC-ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCc
Confidence 87654 677888899999999 999999999999988322 2336788899999999999999999999998762 3457
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 279 VTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 279 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
..+..+...+.+.|++++|.+.++++.+.....+...+..+...+...|+.++|...++.+.+.
T Consensus 148 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 148 PAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8889999999999999999999999988753257778888888899999999999999998765
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=4.7e-13 Score=140.72 Aligned_cols=278 Identities=15% Similarity=0.109 Sum_probs=148.1
Q ss_pred CCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-C
Q 004814 381 PDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPT----VVTYNTLIDGLCRYGDLEVAQQLKENMINQ----GIL-P 451 (729)
Q Consensus 381 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-~ 451 (729)
.....+......+...|++++|...|+++.+.+. .+ ...+..+...+...|++++|...++++++. +.. .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 3445556666677777777777777777666431 12 245566666677777777777777665432 111 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 452 DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ-PDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLV 530 (729)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li 530 (729)
...++..+...+...|++++|...++++.+.... ++. .....++..+.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~ 134 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLG 134 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHH
Confidence 2345556666666667777776666665543100 010 00022334444
Q ss_pred HHHHhcCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 531 HGLCKLGS--------------------LEEANELLRKMVGD----GFIP-DHITYTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 531 ~~~~~~g~--------------------~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
..+...|+ +++|...+++.++. +..+ ...++..+...+...|++++|.+.+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44444444 55555554443321 1011 12345555566666666666666666555
Q ss_pred HCCC-CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 586 RKGL-SPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIR-PN----VITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 586 ~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
+... .++ ..++..+...|...|++++|...++++.+.... ++ ..++..++..|...|++++|...++++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 011 225556666666666666666666665542100 01 3355666666666677777776666665
Q ss_pred HcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 656 EEGI-LPN----KYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 656 ~~g~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+..- .++ ..++..+...|...|++++|.+.+++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4210 011 3355566666666777777777766665
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=5.2e-13 Score=140.81 Aligned_cols=276 Identities=16% Similarity=0.082 Sum_probs=168.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHH
Q 004814 385 SYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTV----VTYNTLIDGLCRYGDLEVAQQLKENMINQ----G-ILPDVIT 455 (729)
Q Consensus 385 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~ 455 (729)
.+..+...+...|++++|+..|+++.+.+.. +. ..+..+...+...|++++|...++++++. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444555666666666666666666654211 22 34555666666666666666666665542 1 0112344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCK 535 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 535 (729)
+..+...|...|++++|...++++.+.... . .+.+....++..+...|..
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---------------~---------------~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQ---------------L---------------GDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------H---------------TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH---------------h---------------hchHHHHHHHHHHHHHHHH
Confidence 555555556666666666665555432000 0 0001123345556666666
Q ss_pred cCC-----------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC
Q 004814 536 LGS-----------------LEEANELLRKMVGD----GF-IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL-SPT 592 (729)
Q Consensus 536 ~g~-----------------~~~A~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 592 (729)
.|+ +++|.+.+++.++. +. .....++..+...+...|++++|.+.+++..+... .++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 66666666655432 11 11234667777778888888888888887765410 011
Q ss_pred ----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC
Q 004814 593 ----LVTYTVLIHAHAARGRLELAFMYFSEMQVKGI--R---PNVITYNALINGLCRLRRIDQAYGLFIDMEEE----GI 659 (729)
Q Consensus 593 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~--~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~ 659 (729)
..++..+...|...|++++|...++++.+... . ....++..++..|...|++++|..++++..+. +.
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 23677788888888999999888888765311 0 11456778888899999999999999888763 10
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 660 LP-NKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 660 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.+ ...++..+..+|.+.|++++|.+.++++++
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 134677888889999999999999999883
No 61
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=6.5e-13 Score=140.09 Aligned_cols=243 Identities=12% Similarity=0.002 Sum_probs=162.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
....+..++..+...|++++|...++++++..+.... ....++..++..|...|++++|+..|+++++.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR-----------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh-----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455667788899999999999999999988665210 11357888999999999999999999998763
Q ss_pred ----CCC-CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCC--------------
Q 004814 203 ----GLL-PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG-----IKPSIVTYNTMLDSFCKEGE-------------- 258 (729)
Q Consensus 203 ----~~~-~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~-------------- 258 (729)
+.. ....++..+...+...|++++|...|+++.+.. .+....++..+...+...|+
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 116 AKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 111 134567788888999999999999998876531 12234577888888888888
Q ss_pred ---HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc-cC----hhhHHHHHHHHHh
Q 004814 259 ---MQEALELLWEMQGR----GCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK-VS----AHSYNPIICGYSE 325 (729)
Q Consensus 259 ---~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~ 325 (729)
+++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..+.... .+ ..++..+...|..
T Consensus 196 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (411)
T 4a1s_A 196 KEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 88888887776442 1111 2236667777778888888888888777653211 01 1256666666777
Q ss_pred CCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 326 KGLLVEALNLEEEMVTRGVA-----PTLATYNILIYGLCKWGRVSDARHRFFEMLR 376 (729)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 376 (729)
.|++++|.+.+++....... ....++..+...+...|++++|.+.+++.+.
T Consensus 276 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777766665542110 0133455555555666666666655555443
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.50 E-value=3.5e-12 Score=117.60 Aligned_cols=173 Identities=13% Similarity=0.042 Sum_probs=145.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 004814 522 DLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIH 601 (729)
Q Consensus 522 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 601 (729)
+..+|..+...+.+.|++++|++.|++.++..+. +..++..+..++.+.|++++|...++...... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678888899999999999999999998887543 67788888899999999999999999888764 556777888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 004814 602 AHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQE 681 (729)
Q Consensus 602 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 681 (729)
.+...++++.|...+.++.+.. +.+...+..++.+|.+.|++++|++.|++..+.. +.+..+|..++.+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 8889999999999999988763 3367788889999999999999999999998864 5567788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHH
Q 004814 682 ALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 682 A~~~~~~m~~~~~~pd~~~ 700 (729)
|++.|++++ .+.|+...
T Consensus 160 A~~~~~~al--~~~p~~a~ 176 (184)
T 3vtx_A 160 AVKYFKKAL--EKEEKKAK 176 (184)
T ss_dssp HHHHHHHHH--HTTHHHHH
T ss_pred HHHHHHHHH--hCCccCHH
Confidence 999999998 56676543
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=1.2e-11 Score=124.65 Aligned_cols=219 Identities=9% Similarity=-0.041 Sum_probs=160.5
Q ss_pred hhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH-------cCCCH-------HHHHHHHHHHHH-CCCC
Q 004814 141 RSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT-------KKSMV-------EQCLLVFNKMLR-NGLL 205 (729)
Q Consensus 141 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~ 205 (729)
++|...|++++..+|. ++.+|..++..+. +.|++ ++|..+|+++++ ..+.
T Consensus 33 ~~a~~~~~~al~~~p~---------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~ 97 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 97 (308)
T ss_dssp HHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHcCC---------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc
Confidence 6788899999998876 5777777777765 35775 899999999998 4543
Q ss_pred CChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004814 206 PDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIV-TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVL 284 (729)
Q Consensus 206 ~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 284 (729)
+...|..++..+.+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +++...|...
T Consensus 98 -~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~ 174 (308)
T 2ond_A 98 -NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTA 174 (308)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHH
T ss_pred -cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence 66688888888999999999999999998853 22343 78888888888899999999998888763 2344445433
Q ss_pred HHHHH-hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHh
Q 004814 285 ITGFS-RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRG-VAP--TLATYNILIYGLCK 360 (729)
Q Consensus 285 i~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~ 360 (729)
+.... ..|+.++|.++|++.++.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+
T Consensus 175 a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 175 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp HHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 33322 2688888888888887753 2366777777777777788888888888777752 233 35567777777777
Q ss_pred cCCHHHHHHHHHHHHHCC
Q 004814 361 WGRVSDARHRFFEMLRKN 378 (729)
Q Consensus 361 ~g~~~~A~~~~~~~~~~~ 378 (729)
.|+.++|..+++++.+..
T Consensus 254 ~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHc
Confidence 777777777777776644
No 64
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.48 E-value=8.8e-13 Score=138.62 Aligned_cols=203 Identities=14% Similarity=0.022 Sum_probs=125.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CC-CCC
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD----VKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GI-KPS 242 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~-~~~ 242 (729)
....+..++..+.+.|++++|+..|+++++.++. + ...+..+...+...|++++|...|+++.+. +- +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455667788889999999999999999887543 3 346777888888999999999988876542 11 122
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCC--------------------HHHH
Q 004814 243 IVTYNTMLDSFCKEGEMQEALELLWEMQGRGC-SPN----GVTYNVLITGFSRNGE--------------------LEQA 297 (729)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~A 297 (729)
..++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45677788888888888888888877654310 011 3366677777777777 7777
Q ss_pred HHHHHHHHhC----CC-ccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHH
Q 004814 298 RGLIRDMLKL----GL-KVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGV-APT----LATYNILIYGLCKWGRVSDA 367 (729)
Q Consensus 298 ~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A 367 (729)
.+.+++..+. +. +....++..+...|...|++++|.+.+++..+... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 7776665432 10 11123455555555556666666655555543210 001 12344444555555555555
Q ss_pred HHHHHHHH
Q 004814 368 RHRFFEML 375 (729)
Q Consensus 368 ~~~~~~~~ 375 (729)
...+++..
T Consensus 247 ~~~~~~al 254 (406)
T 3sf4_A 247 SEYYKKTL 254 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.46 E-value=4.6e-11 Score=120.27 Aligned_cols=217 Identities=14% Similarity=0.107 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 470 SMAREFFNEMLRKGLQPDRFAYTTQIAGEL-------KLGDT-------SEAYRLQEEMLAKGFPPDLITYNVLVHGLCK 535 (729)
Q Consensus 470 ~~A~~~~~~~~~~g~~~~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 535 (729)
++|..+|+++++... .+...|..++..+. +.|++ ++|..++++.++.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 455555655555421 13444444444433 24554 6777777777763124456677777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH-HcCCHHHHH
Q 004814 536 LGSLEEANELLRKMVGDGFIPDHI-TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA-ARGRLELAF 613 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~ 613 (729)
.|++++|.++|+++++..+. +.. +|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777765322 232 67777777777777888888887777653 334444443333322 257788888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG-ILP--NKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+|+++++.. +-+...|..++..+.+.|++++|..+|+++++.. ++| ....|..++..+.+.|+.++|..++++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888777652 2256677777777777788888888888877752 344 34567777777777788888888888777
No 66
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=8.4e-12 Score=115.05 Aligned_cols=167 Identities=11% Similarity=0.026 Sum_probs=89.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
++..|..++.++.+.|++++|...|+++++.+|. +..++..++.+|.+.|++++|+..+.++...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---------------NVETLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 4455555666666666666666666666555554 3445555555555566666666555555554
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYN 282 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 282 (729)
.+. +...+..+...+...++++.|...+.+..+.. +.+..++..+...+.+.|++++|++.|++..+.. +.+..+|.
T Consensus 69 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~ 145 (184)
T 3vtx_A 69 DTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQ 145 (184)
T ss_dssp CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred Cch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHH
Confidence 433 34444445555555555555555555555433 3344455555555555555555555555555431 22344455
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 283 VLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 283 ~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
.+...|.+.|++++|.+.|++.++.
T Consensus 146 ~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 146 SIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 5555555555555555555555543
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=9.8e-13 Score=134.08 Aligned_cols=206 Identities=16% Similarity=0.070 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN- 202 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 202 (729)
...+...+..+...|++++|...++++++..|... .....++..++..|...|++++|+..++++++.
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 34566678888899999999999999988765521 012457778889999999999999998887653
Q ss_pred ---CCCC-ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHHHHHhcCC---------------
Q 004814 203 ---GLLP-DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI-KPS----IVTYNTMLDSFCKEGE--------------- 258 (729)
Q Consensus 203 ---~~~~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~--------------- 258 (729)
+..+ ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|+
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 1111 244566777788888888888888887654210 011 3367777777777777
Q ss_pred -----HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc-----cChhhHHHHHHHH
Q 004814 259 -----MQEALELLWEMQGR----GCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK-----VSAHSYNPIICGY 323 (729)
Q Consensus 259 -----~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~~~~~li~~~ 323 (729)
+++|.+.+++.... +..+ ....+..+...+...|++++|.+.+++..+.... ....++..+...+
T Consensus 154 ~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 233 (338)
T 3ro2_A 154 DVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 233 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 77777777665431 1111 1234555666666666666666666665532100 0112444445555
Q ss_pred HhCCCHHHHHHHHHHHH
Q 004814 324 SEKGLLVEALNLEEEMV 340 (729)
Q Consensus 324 ~~~g~~~~A~~~~~~m~ 340 (729)
...|++++|.+.+++..
T Consensus 234 ~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 234 IFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555554443
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.9e-12 Score=131.92 Aligned_cols=277 Identities=14% Similarity=0.031 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC----hHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CC-CCChh
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD----VKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GI-KPSIV 244 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 244 (729)
..+...+..+...|++++|+..|+++++..+. + ...+..+...+...|++++|...+++..+. +- +....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556778888999999999999999987543 3 356777888889999999999998887542 11 12255
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCC--------------------HHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGC-SPN----GVTYNVLITGFSRNGE--------------------LEQARG 299 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~ 299 (729)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 677788888888888888888877654210 112 2356667777777777 677776
Q ss_pred HHHHHHhC----C-CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 300 LIRDMLKL----G-LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVA-PTLATYNILIYGLCKWGRVSDARHRFFE 373 (729)
Q Consensus 300 ~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (729)
.+++..+. + ......++..+...+...|++++|.+.+++..+.... ++
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-------------------------- 218 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-------------------------- 218 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC--------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC--------------------------
Confidence 66665432 1 0111224444555555555555555555544431000 00
Q ss_pred HHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 374 MLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSR----NLVP-TVVTYNTLIDGLCRYGDLEVAQQLKENMINQG 448 (729)
Q Consensus 374 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 448 (729)
......++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++.++..
T Consensus 219 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 219 -----KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0001224444555555555555555555544321 1000 13345556666666666666666666655421
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 449 -----ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRK 482 (729)
Q Consensus 449 -----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (729)
......++..+...|.+.|++++|...+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 0111345666777777777777777777777664
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=8.3e-12 Score=130.18 Aligned_cols=230 Identities=11% Similarity=0.016 Sum_probs=160.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRK----GLQP-DRFAYTTQIAGELKLGDTSEAYRLQEEMLAKG--F----PPDLITYN 527 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~----~~~~~~~~ 527 (729)
....+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444556667777777777766653 1111 12455566666777777777777776665431 1 11235677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChhhHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGDGFI-PD----HITYTSIIHASLEMGDLRRGRDLFNNMLRK----GL-SPTLVTYT 597 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~ 597 (729)
.+...|...|++++|.+.+++.++.... ++ ..++..+..+|...|++++|.+.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888889999999999988887753111 11 247888889999999999999999988772 22 33466788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 004814 598 VLIHAHAARGRLELAFMYFSEMQVK----GIRPNVITYNALINGLCRLRR---IDQAYGLFIDMEEEGILPN-KYTYTIL 669 (729)
Q Consensus 598 ~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l 669 (729)
.++..|.+.|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 8999999999999999999988763 111112235678888888998 77788877766 22333 3467788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004814 670 INENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 670 ~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+..|...|++++|...++++++
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999873
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=6.3e-12 Score=134.60 Aligned_cols=215 Identities=10% Similarity=-0.053 Sum_probs=150.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 469 LSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDT-SEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLR 547 (729)
Q Consensus 469 ~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 547 (729)
+++++..+++..... ..+...+..+...+...|++ ++|+..+++.++.. +.+...|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444443331 12444555555555566666 66666666655543 4456677777777777778888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc--------CCHH
Q 004814 548 KMVGDGFIPDHITYTSIIHASLEM---------GDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR--------GRLE 610 (729)
Q Consensus 548 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 610 (729)
++++.. |+...+..+...+... |++++|.+.++++++.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 777753 5567777777777777 88888888888887764 55677888888888877 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 004814 611 LAFMYFSEMQVKGIR--PNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKE 688 (729)
Q Consensus 611 ~A~~~~~~~~~~g~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 688 (729)
+|+..|+++.+.... .+...|..++.+|...|++++|.+.|+++.+.. +.+...+..+..++...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888875210 267788888888888888888888888888763 44566788888888888888888876544
Q ss_pred H
Q 004814 689 M 689 (729)
Q Consensus 689 m 689 (729)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.42 E-value=5e-12 Score=135.39 Aligned_cols=214 Identities=9% Similarity=-0.050 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 004814 189 VEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFS-VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLW 267 (729)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 267 (729)
+++++..+++.....+ .+...+..+...+...|++ ++|++.|++.++.. +.+..+|..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5677777777766543 3677788888888889999 99999999888765 5567888889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC--------CCHH
Q 004814 268 EMQGRGCSPNGVTYNVLITGFSRN---------GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK--------GLLV 330 (729)
Q Consensus 268 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--------g~~~ 330 (729)
+..+. .|+...+..+...+... |++++|.+.+++.++.. +.+...|..+...|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88876 46677888888888888 88889999998888875 34677888888888887 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHH
Q 004814 331 EALNLEEEMVTRGVA--PTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDE 408 (729)
Q Consensus 331 ~A~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 408 (729)
+|++.|++..+..+. .+...|..+...|...|++++|.+.|++..+..+ .+...+..+...+...|++++|++.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888888888875331 2677788888888888888888888888877654 4566777788888888888888765543
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.41 E-value=1.9e-11 Score=127.39 Aligned_cols=228 Identities=11% Similarity=-0.008 Sum_probs=176.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----CHHHHH
Q 004814 494 QIAGELKLGDTSEAYRLQEEMLAK----GFPP-DLITYNVLVHGLCKLGSLEEANELLRKMVGDGFI-P-----DHITYT 562 (729)
Q Consensus 494 li~~~~~~g~~~~A~~l~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-----~~~~~~ 562 (729)
....+...|++++|...+++..+. +.++ ...++..+...+...|++++|...+++.++.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 456678899999999999999874 2111 3467889999999999999999999988753111 1 235788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKGL-SPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVK----GI-RPNVITYN 632 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~-~p~~~~~~ 632 (729)
.+...|...|++++|.+.+++.++... .++ ..++..++..|...|++++|++.+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 889999999999999999998875410 111 247888999999999999999999999872 22 33466789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 004814 633 ALINGLCRLRRIDQAYGLFIDMEEE----GILPNKYTYTILINENCNAGN---WQEALRLYKEMLDREIEPDYCTHSALL 705 (729)
Q Consensus 633 ~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~pd~~~~~~ll 705 (729)
.++..|.+.|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++. +..|+.......+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999998763 111122345678888889999 78888887776 5566655555566
Q ss_pred Hhhhccchhhc-HHHHHHHh
Q 004814 706 LKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 706 ~~~l~~~g~~~-a~~~l~~l 724 (729)
+..+.+.|+.+ |.+++++-
T Consensus 346 a~~y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 99999999998 98888654
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=2.4e-12 Score=129.80 Aligned_cols=244 Identities=15% Similarity=0.097 Sum_probs=131.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 004814 418 VVTYNTLIDGLCRYGDLEVAQQLKENMINQ-------GILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFA 490 (729)
Q Consensus 418 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~ 490 (729)
..++..+...+...|++++|..+++++.+. ..+....++..+...|...|++++|...++++.+..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 344555556666666666666666665542 112234445555555556666666666555554320
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHH
Q 004814 491 YTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD------GFIP-DHITYTS 563 (729)
Q Consensus 491 ~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~ 563 (729)
+.......+....++..+...+...|++++|...++++++. +..| ....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000111222345555666666666666666666665543 1111 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC--
Q 004814 564 IIHASLEMGDLRRGRDLFNNMLRK------G-LSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK-------GIRPN-- 627 (729)
Q Consensus 564 l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p~-- 627 (729)
+...+...|++++|.+.++++.+. + .+....++..+...|...|++++|...++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 667777777777777777776653 1 1122446667777777777877777777777652 01111
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 628 -----VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 628 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
...+..+...+...+.+.+|...+++..... +.+..++..++.+|.+.|++++|.+.+++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1122333344455566667777777766532 3345678888999999999999999999987
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=3.5e-12 Score=128.50 Aligned_cols=174 Identities=18% Similarity=0.143 Sum_probs=127.1
Q ss_pred CCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-------CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC---
Q 004814 168 SSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN-------GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF--- 237 (729)
Q Consensus 168 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~--- 237 (729)
+.+....++..++..|...|++++|+..|+++.+. .......++..+...+...|++++|...|+++.+.
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33456788899999999999999999999999873 22224556778888899999999999999888753
Q ss_pred ---C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 238 ---G-IKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR------GCSP-NGVTYNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 238 ---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
+ .+....++..+...+...|++++|...|+++.+. +..| ....+..+...+...|++++|.+.++++.+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 1234567788888888888888888888887653 1222 344567777888888888888888888775
Q ss_pred C------C-CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 004814 307 L------G-LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVT 341 (729)
Q Consensus 307 ~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (729)
. + .+....++..+...|...|++++|.+.++++.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 1 122344666777777777777777777777665
No 75
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=1.4e-10 Score=120.60 Aligned_cols=229 Identities=10% Similarity=-0.030 Sum_probs=159.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---C-CCHHHHH
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRKGL-QPD----RFAYTTQIAGELKLGDTSEAYRLQEEMLAKG--F---P-PDLITYN 527 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~--~---~-~~~~~~~ 527 (729)
....+...|++++|+..++++.+... .++ ..++..+...+...|++++|...+++..+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455667777777777777765311 112 3355566667777777777777777665421 0 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhhHHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMVGD----GFI-PDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPTLVTYTV 598 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~ 598 (729)
.+...|...|++++|.+.+++.++. +.. ....++..+..+|...|++++|.+.+++.... +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888888899999998888877653 111 12346778888899999999999999988761 22334677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGI---RP-NVITYNALINGLCRLRR---IDQAYGLFIDMEEEGILPN-KYTYTILI 670 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 670 (729)
++..|.+.|++++|...+++..+... .+ ....+..+...|...|+ +++|+.++++. +..|+ ...+..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHH
Confidence 88999999999999999999887411 12 23356667777777888 77787777762 22222 34667888
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~ 690 (729)
..|...|++++|...|++++
T Consensus 344 ~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999987
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.33 E-value=3.4e-11 Score=134.03 Aligned_cols=168 Identities=10% Similarity=0.042 Sum_probs=143.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+..+|+.++.++.+.|++++|...|+++++.+|+ +...+..|+.+|.+.|++++|+..|++++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---------------~~~a~~nLg~~l~~~g~~~eA~~~~~~Al 70 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---------------FAAAHSNLASVLQQQGKLQEALMHYKEAI 70 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346788999999999999999999999999998886 46788889999999999999999999999
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVT 280 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 280 (729)
+..+. +..+|+.+..+|.+.|++++|++.|++.++.. +.+..+|+.+..+|.+.|++++|++.|++..+.. +-+...
T Consensus 71 ~l~P~-~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a 147 (723)
T 4gyw_A 71 RISPT-FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDA 147 (723)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 87655 67888889999999999999999999988865 5567889999999999999999999999988762 335678
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 281 YNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 281 ~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
+..+...+...|++++|.+.++++++
T Consensus 148 ~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 148 YCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 88888999999999998888887765
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.32 E-value=1.1e-10 Score=111.84 Aligned_cols=207 Identities=11% Similarity=0.022 Sum_probs=160.1
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 486 PDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSII 565 (729)
Q Consensus 486 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 565 (729)
.|+..+......+...|++++|+..|+..++...+++...+..+..++...|++++|++.+++.++..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888899999999999999999988753378888888999999999999999999999987533 567888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTL-------VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN---VITYNALI 635 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~---~~~~~~l~ 635 (729)
.++...|++++|.+.+++.++.. +.+. ..|..+...+...|++++|++.|+++.+. .|+ ...+..++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 99999999999999999998874 4445 45788888889999999999999999885 455 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLL 706 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~ 706 (729)
.+|...| ...++++...+ ..+...|.... ....|.+++|+..+++++ .+.|+......++.
T Consensus 161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~--~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV--TLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHH
Confidence 7776544 44456665543 33445554443 345677899999999999 66787665555533
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=6.5e-10 Score=115.28 Aligned_cols=167 Identities=10% Similarity=-0.012 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChH----hHHHHHHHHHHCCChhHHHHHHHHHHhCCC-CCC----hh
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVK----NCNRIIKVLRDNGFSVKAREVYRMMGEFGI-KPS----IV 244 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 244 (729)
.+...+...+...|++++|...+++.+......+.. +++.+...+...|++++|...+++..+... ..+ ..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344556677788899999999999988765433322 345566677778888888888877654210 011 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc----Ch
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGR----GCS--P-NGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV----SA 313 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----~~ 313 (729)
++..+...+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++..+..... ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 3455666677777777777777665432 111 2 12344555666666777777777766665432110 12
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 314 HSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
.++..+...+...|++++|...+++..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234444455555555555555555544
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.31 E-value=7.8e-10 Score=114.66 Aligned_cols=163 Identities=15% Similarity=-0.001 Sum_probs=77.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHH
Q 004814 388 TLLYGYCRSGNIGEAFLLFDELRSRNLVPTVV----TYNTLIDGLCRYGDLEVAQQLKENMINQGI-LPDV----ITYTI 458 (729)
Q Consensus 388 ~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~ 458 (729)
.....+...|++++|...+++........+.. .++.+...+...|++++|...+++..+... ..+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556677777777777665543211211 344455556666666666666666554210 0111 22344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHH
Q 004814 459 MVNGSCKMGNLSMAREFFNEMLRK----GLQ--PD-RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFP----PDLITYN 527 (729)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~----g~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~----~~~~~~~ 527 (729)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+++....... ....++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 555566666666666666655542 111 11 122333344445555555555555544432110 0122334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~~ 550 (729)
.+...+...|++++|...+++..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444555555555554443
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=2.4e-10 Score=104.90 Aligned_cols=165 Identities=19% Similarity=0.104 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHA 602 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 602 (729)
...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34566777788888999999998888877643 367788888888889999999999999888764 5567788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988763 3467788888899999999999999999998864 55677888899999999999999
Q ss_pred HHHHHHHHH
Q 004814 683 LRLYKEMLD 691 (729)
Q Consensus 683 ~~~~~~m~~ 691 (729)
...++++++
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999873
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=4.1e-10 Score=116.98 Aligned_cols=229 Identities=8% Similarity=-0.078 Sum_probs=158.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CHhhHH
Q 004814 424 LIDGLCRYGDLEVAQQLKENMINQGI-LP----DVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQ-P-----DRFAYT 492 (729)
Q Consensus 424 ll~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~-----~~~~~~ 492 (729)
....+...|++++|...++++.+... .+ ...++..+...|...|+++.|...+++..+.... + ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34455677778888888777765410 11 2446677777778888888888887777653110 1 134556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 004814 493 TQIAGELKLGDTSEAYRLQEEMLAK----GFP-PDLITYNVLVHGLCKLGSLEEANELLRKMVG-----DGFIPDHITYT 562 (729)
Q Consensus 493 ~li~~~~~~g~~~~A~~l~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 562 (729)
.+...+...|++++|...+++.++. +.+ ....++..+...|...|++++|.+.+++.++ .... ...++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence 6677788888888888888776553 111 1234677888889999999999999988877 4322 366788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKG----LSPTLVTYTVLIHAHAARGR---LELAFMYFSEMQVKGIRP-NVITYNAL 634 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p-~~~~~~~l 634 (729)
.+...+.+.|++++|...+++..+.. .+.....+..+...|...|+ +.+|+..+++. +..| ....+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 88899999999999999999887652 12223345666666777788 77777777762 2222 23456788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 004814 635 INGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 635 ~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
+..|...|++++|...|+++.+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999998875
No 82
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.30 E-value=8.1e-11 Score=131.03 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=140.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVL 599 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 599 (729)
|.+..+|+.+...+.+.|++++|++.|++.++..+. +..++..+..+|.+.|++++|++.|+++++.. +.+...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 445678888889999999999999999988886533 57788888999999999999999999988875 5567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 004814 600 IHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNW 679 (729)
Q Consensus 600 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 679 (729)
..+|...|++++|++.|+++++... -+...|+.++.+|...|++++|++.|+++++.. +-+...|..++.++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999888532 257788999999999999999999999998863 44567888899999999999
Q ss_pred HHHHHHHHHHH
Q 004814 680 QEALRLYKEML 690 (729)
Q Consensus 680 ~~A~~~~~~m~ 690 (729)
++|.+.+++++
T Consensus 162 ~~A~~~~~kal 172 (723)
T 4gyw_A 162 TDYDERMKKLV 172 (723)
T ss_dssp TTHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888877
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2.5e-10 Score=104.78 Aligned_cols=165 Identities=13% Similarity=0.042 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
...+..++..|...|++++|+..++++.+..+. +...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 456667777888888888888888888776543 56667777777888888888888888877654 4566677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEA 332 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 332 (729)
+...|++++|.+.++++.+. .+.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 77778888888877777665 23456666777777777777777777777776654 23456666666666666666666
Q ss_pred HHHHHHHHH
Q 004814 333 LNLEEEMVT 341 (729)
Q Consensus 333 ~~~~~~m~~ 341 (729)
.+.++++.+
T Consensus 164 ~~~~~~~~~ 172 (186)
T 3as5_A 164 LPHFKKANE 172 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666654
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=7.7e-10 Score=105.76 Aligned_cols=206 Identities=9% Similarity=-0.054 Sum_probs=160.2
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
++..+..++..|.+.|++++|+..|+++++..+.++...+..+..++...|++++|+..|++..+.. +.+..+|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4577888999999999999999999999998765677888889999999999999999999999875 556788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHH
Q 004814 252 SFCKEGEMQEALELLWEMQGRGCSPNG-------VTYNVLITGFSRNGELEQARGLIRDMLKLGLKV--SAHSYNPIICG 322 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~ 322 (729)
.+...|++++|.+.|++..+.. +.+. ..|..+...+...|++++|.+.|+++++.+ +. +..++..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 9999999999999999998862 2344 457888889999999999999999999874 22 35677788888
Q ss_pred HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 004814 323 YSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTL 389 (729)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 389 (729)
|...| ...++++...+.. +...|.... ....+.+++|+..+++..+..+ .+..+...+
T Consensus 163 ~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l 220 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ 220 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 76554 3445555554322 444454443 3345678999999999988663 334444333
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=5.5e-10 Score=111.28 Aligned_cols=174 Identities=11% Similarity=-0.059 Sum_probs=116.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC-CC----
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGF---IP--DHITYTSIIHASLEM-GDLRRGRDLFNNMLRKGLS-PT---- 592 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~---- 592 (729)
.+|+.+...|.+.|++++|+..+++.++... .+ -..++..+...|... |++++|...+++.++.... .+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4556666666667777777766666654210 01 134677788888885 9999999988888764200 01
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNV------ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKY-- 664 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-- 664 (729)
..++..++..|...|++++|+..|+++.+....... ..|..++.++...|++++|+..+++..+. .|+..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~ 235 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCc
Confidence 346788888899999999999999998886332221 15677888888999999999999988763 34321
Q ss_pred ----HHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 004814 665 ----TYTILINENC--NAGNWQEALRLYKEMLDREIEPDYCTH 701 (729)
Q Consensus 665 ----~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~pd~~~~ 701 (729)
.+..++.++. ..+++++|+..|+++. .+.|+....
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~--~l~~~~~~~ 276 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM--RLDKWKITI 276 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS--CCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC--ccHHHHHHH
Confidence 2444555554 4577999999998876 566655433
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=2.8e-10 Score=112.60 Aligned_cols=227 Identities=13% Similarity=-0.005 Sum_probs=149.8
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 004814 464 CKMGNLSMAREFFNEMLRK-------GLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAK------GF-PPDLITYNVL 529 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~-~~~~~~~~~l 529 (729)
...|++++|+..+++.++. .......++..+...+...|++++|...++++++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777766652 11223456777788888999999999999888764 21 2335678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCChhh
Q 004814 530 VHGLCKLGSLEEANELLRKMVGD------GF-IPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK------G-LSPTLVT 595 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~~~------~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~ 595 (729)
...+...|++++|.+.++++++. .. .....++..+...+...|++++|.+.++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88899999999999999888764 11 223557788888889999999999999888765 1 1223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---c-C-C-CC
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVK-------GIRP-NVITYNALINGLCRLRRIDQAYGLFIDMEE---E-G-I-LP 661 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~---~-g-~-~p 661 (729)
+..+...|...|++++|..+++++.+. ...+ ....+..+...+...+....+..+ .++.. . + . +.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 788888889999999999999888763 1112 222344444444443333322222 11111 1 1 1 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 662 NKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 662 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
...++..++.+|...|++++|...++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234677888999999999999999998873
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.15 E-value=5.5e-10 Score=110.44 Aligned_cols=229 Identities=14% Similarity=0.125 Sum_probs=157.2
Q ss_pred HHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHH
Q 004814 105 RIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYT 184 (729)
Q Consensus 105 ~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 184 (729)
+.|+..+..+.. ...+....++..++.++...|++++|...+++++..... .. +.+......++..++.+|.
T Consensus 25 ~~al~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~--~~~~~~~~~~~~~l~~~~~ 96 (283)
T 3edt_B 25 KQALEDLEKTSG-HDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK-----TL--GKDHPAVAATLNNLAVLYG 96 (283)
T ss_dssp HHHHHHHHHHHC-SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HT--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH-----Hc--CCcchHHHHHHHHHHHHHH
Confidence 345555544432 122446788999999999999999999999998876311 00 0111235678899999999
Q ss_pred cCCCHHHHHHHHHHHHHC-----CC-CC-ChHhHHHHHHHHHHCCChhHHHHHHHHHHhC------C-CCCChhhHHHHH
Q 004814 185 KKSMVEQCLLVFNKMLRN-----GL-LP-DVKNCNRIIKVLRDNGFSVKAREVYRMMGEF------G-IKPSIVTYNTML 250 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~li 250 (729)
..|++++|+..|+++++. +. .| ...++..+...+...|++++|...|+++.+. + .+....++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 176 (283)
T 3edt_B 97 KRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLA 176 (283)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 999999999999999875 11 12 3566788999999999999999999998764 1 123456888999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhCCCH------HHHHHHHHHHHhCCCccChhhH
Q 004814 251 DSFCKEGEMQEALELLWEMQGR-------GCSPN-GVTYNVLITGFSRNGEL------EQARGLIRDMLKLGLKVSAHSY 316 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~-------~~~p~-~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~~~~~ 316 (729)
..+.+.|++++|...+++..+. ...+. ...|..+...+...+.. ..+...++.... ..+....++
T Consensus 177 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 255 (283)
T 3edt_B 177 SCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTL 255 (283)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence 9999999999999999988753 11222 22333333333333332 222222222111 123345678
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 317 NPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
..+...|...|++++|.+.+++..+.
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999988753
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.15 E-value=1.1e-09 Score=109.23 Aligned_cols=171 Identities=9% Similarity=-0.076 Sum_probs=102.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
|...+.++...|++++|...+++++...+.. .+.......+..++.+|.+.|++++|+..|++.++.....
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKA---------GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 3334567788899999999998888764320 0111135677888888888888888888888887632110
Q ss_pred -C----hHhHHHHHHHHHHC-CChhHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 004814 207 -D----VKNCNRIIKVLRDN-GFSVKAREVYRMMGEFGIKP-S----IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS 275 (729)
Q Consensus 207 -~----~~~~~~ll~~l~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 275 (729)
+ ..+++.+..+|... |++++|+..|++..+..... + ..+++.+...+.+.|++++|+..|++..+....
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 190 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMG 190 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 1 23456666666664 77777777776665431000 0 234566666666666666666666666654221
Q ss_pred CCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 276 PNG------VTYNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 276 p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
... ..|..+...+...|++++|...+++.++
T Consensus 191 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 191 NRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp CTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred CCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 111 1344555556666666666666666554
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.14 E-value=2.4e-09 Score=100.60 Aligned_cols=181 Identities=12% Similarity=0.053 Sum_probs=121.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHh-hcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLI-GGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
+...+...+..+...|++++|...|++++..+|........ +........+.+...++.+|.+.|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556667778889999999999999999998873111111 11111222344444488888888888888888888888
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHH
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE--MQEALELLWEMQGRGCSPNGV 279 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 279 (729)
..+. +...+..+..++...|++++|...|+++++.. |.+..+|..+...|...|+ .+.+...+..... ..|...
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 7655 67778888888888888888888888888765 5567788888877766553 3344555554432 122223
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
.+..+..++...|++++|...|++.++.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344455556667777888888777765
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.10 E-value=1.3e-08 Score=99.24 Aligned_cols=184 Identities=15% Similarity=0.136 Sum_probs=101.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 507 AYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGF-IPDHITYTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 507 A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
|+..+++.+..+ +++...+..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445555554443 34444445666666666777777776666655443 1244555666666667777777777776666
Q ss_pred HCCCCC-----ChhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 586 RKGLSP-----TLVTYTVLIHA--HAARG--RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 586 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
+. .| +..+...|+.+ ....| ++.+|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 23444444444 22233 667777777776554 24422223333366666777777777665543
Q ss_pred c-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 657 E-----G----ILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 657 ~-----g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
. + -+.|..++..+|......|+ +|.++++++. ...|+.+
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~--~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLV--KLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHH--HTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHH--HhCCCCh
Confidence 2 0 02244455455555555565 6667777766 4556554
No 91
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.09 E-value=1.7e-07 Score=100.08 Aligned_cols=390 Identities=12% Similarity=-0.002 Sum_probs=191.9
Q ss_pred HCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHH
Q 004814 220 DNG-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGE-LEQA 297 (729)
Q Consensus 220 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A 297 (729)
+.| +++.|..+|+.+... -|. |+++.+..+|++.... .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 377888888887763 233 8899999999988875 5688888887777666653 4556
Q ss_pred HHHHHHHHhC-CC-ccChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 298 RGLIRDMLKL-GL-KVSAHSYNPIICGYSE----KGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRF 371 (729)
Q Consensus 298 ~~~~~~m~~~-~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~ 371 (729)
..+|+..+.. |. ..+...|...+..+.. .|+.+.+.++|+..+......-...|......- +......+.+++
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~ 146 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHH
Confidence 6777777653 42 2355677777665542 356667777777777631110111121111111 111111222222
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC--C-----HHHHHHHHHHH
Q 004814 372 FEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYG--D-----LEVAQQLKENM 444 (729)
Q Consensus 372 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g--~-----~~~A~~~~~~~ 444 (729)
.+.. +.+..|..+++++...-...+...|...+.--...+ - .+.+..+|+++
T Consensus 147 ~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 147 GDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 1111 123334444444332100012234443333321110 0 23455666666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 445 INQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLI 524 (729)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 524 (729)
+... +.+...|...+..+.+.|+.++|..++++.... |....+.. .|....+.++. ++.+.+.
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~------- 268 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRK------- 268 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHH-------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHH-------
Confidence 6642 445666666666666677777777777777665 33222111 11111111111 1111110
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 004814 525 TYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHA 604 (729)
Q Consensus 525 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 604 (729)
+.. ...+.+ .. .. .......|...+....+.++.+.|..+|+++ ... +.+..+|...+..-.
T Consensus 269 --------~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 269 --------YSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY 330 (493)
T ss_dssp --------TC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred --------HHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence 000 000000 00 00 0011234555555555666777777777777 221 123333332222222
Q ss_pred H-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 605 A-RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 605 ~-~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
. .++.+.|..+|+...+.- +-++..+...++...+.|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 235777777777777642 2234445556666667777777777777752 23556666666656677777777
Q ss_pred HHHHHHH
Q 004814 684 RLYKEML 690 (729)
Q Consensus 684 ~~~~~m~ 690 (729)
.+++++.
T Consensus 405 ~v~~~~~ 411 (493)
T 2uy1_A 405 ELVDQKM 411 (493)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777766
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.08 E-value=2e-07 Score=99.54 Aligned_cols=391 Identities=11% Similarity=0.001 Sum_probs=237.8
Q ss_pred cCC-CHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHH
Q 004814 185 KKS-MVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE-MQEA 262 (729)
Q Consensus 185 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A 262 (729)
+.| +++.|..+|++++..- |. |+++.+..+|++.+.. .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 567 4888999999988742 33 8999999999999985 5799999999988888774 4567
Q ss_pred HHHHHHHHhC-CCC-CCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHH
Q 004814 263 LELLWEMQGR-GCS-PNGVTYNVLITGFS----RNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLE 336 (729)
Q Consensus 263 ~~~~~~m~~~-~~~-p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (729)
..+|+..... |.. .+...|...+..+. ..|+.+.+.++|+++++.. +. .+..+-..|
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P--~~--~~~~lw~~Y------------- 130 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTP--MG--SLSELWKDF------------- 130 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSC--CT--THHHHHHHH-------------
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhCh--hh--hHHHHHHHH-------------
Confidence 7888887653 433 36677887776654 2467889999999999842 11 112222222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcC--C-----HHHHHHHHHHH
Q 004814 337 EEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSG--N-----IGEAFLLFDEL 409 (729)
Q Consensus 337 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~l~~~m 409 (729)
..+... .+..+...++... .+.+..|+.++.++...-...+...|...+..-...+ - .+.+..+|+++
T Consensus 131 ~~fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 131 ENFELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHHHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 111111 0111222222221 1234555555555443111024456766665533321 1 34567789988
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 004814 410 RSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQGILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRF 489 (729)
Q Consensus 410 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~ 489 (729)
.... +.+...|...+..+.+.|+.+.|..++++.+.. +.+...|.. |....+.++ +++.+.+.
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~---~~~~l~~~------- 268 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEA---VYGDLKRK------- 268 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTH---HHHHHHHH-------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhH---HHHHHHHH-------
Confidence 8753 445778888888888999999999999999987 444433332 222211111 13322221
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 004814 490 AYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASL 569 (729)
Q Consensus 490 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 569 (729)
+.. ...+.+ .. .. .......|...+....+.+..+.|..+|+++ +. ...+...|......-.
T Consensus 269 --------~~~-~~~~~~-----~~-~~-~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~ 330 (493)
T 2uy1_A 269 --------YSM-GEAESA-----EK-VF-SKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEY 330 (493)
T ss_dssp --------TC-----------------C-HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHH
T ss_pred --------HHh-hccchh-----hh-hc-ccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHH
Confidence 100 000000 00 00 0112345667777777778899999999998 32 1234444443333222
Q ss_pred h-cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 570 E-MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 570 ~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 648 (729)
. .++.+.|..+|+...+.. +.+...+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+.
T Consensus 331 ~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 331 YATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp HHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence 2 336999999999998863 3345566677777788999999999999973 25677888888778889999999
Q ss_pred HHHHHHHH
Q 004814 649 GLFIDMEE 656 (729)
Q Consensus 649 ~~~~~m~~ 656 (729)
.+++++.+
T Consensus 405 ~v~~~~~~ 412 (493)
T 2uy1_A 405 ELVDQKMD 412 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888875
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.07 E-value=5.1e-09 Score=98.30 Aligned_cols=136 Identities=10% Similarity=0.032 Sum_probs=101.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 563 SIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR 642 (729)
Q Consensus 563 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 642 (729)
.+..++.+.|++++|...+++.++.. |.+...+..+..+|...|++++|+..|+++++... .+...+..++.+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHh
Confidence 37888899999999999999998875 56788899999999999999999999999988632 26778888888887665
Q ss_pred C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 643 R--IDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 643 ~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+ .+.+...+++... ..|....+..+..++...|++++|+..|++++ .+.|+......+
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al--~l~P~~~~~~~l 196 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVI--LRFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHT--TTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCHHHHHHH
Confidence 4 3445555655542 23333345556677788899999999999998 788886544433
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=4.9e-09 Score=102.49 Aligned_cols=191 Identities=9% Similarity=-0.027 Sum_probs=116.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+...+...+..+.+.|++++|...|++++...|.. .....++..++.+|.+.|++++|+..|++++
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l 79 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTH------------EWAADAQFYLARAYYQNKEYLLAASEYERFI 79 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC------------cchHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3567777788888888899999999888888876651 1126677788888888899999999998888
Q ss_pred HCCCC-CC-hHhHHHHHHHHHH--------CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 201 RNGLL-PD-VKNCNRIIKVLRD--------NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 201 ~~~~~-~~-~~~~~~ll~~l~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
+..+. |. ..++..+..++.. .|++++|+..|+++++.. +.+......+... ..+.
T Consensus 80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~ 144 (261)
T 3qky_A 80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELR 144 (261)
T ss_dssp HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHH
T ss_pred HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHH
Confidence 86542 22 3456677777877 888888888888887753 2233333222110 0000
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHHhC----------CCHHHHHHHHHH
Q 004814 271 GRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV--SAHSYNPIICGYSEK----------GLLVEALNLEEE 338 (729)
Q Consensus 271 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~ 338 (729)
.. -...+..+...|.+.|++++|...|+++++..... ....+..+..+|... |++++|...+++
T Consensus 145 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~ 220 (261)
T 3qky_A 145 AK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER 220 (261)
T ss_dssp HH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence 00 00113344555555666666666666655542211 123444555555543 556666666666
Q ss_pred HHHC
Q 004814 339 MVTR 342 (729)
Q Consensus 339 m~~~ 342 (729)
+.+.
T Consensus 221 ~~~~ 224 (261)
T 3qky_A 221 LLQI 224 (261)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.07 E-value=6.7e-09 Score=89.31 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLC 639 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 639 (729)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 35556666777777777777777776654 4456667777777777777888887777777653 235666777777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 640 RLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 640 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
..|++++|.+.++++.+.. +.+...+..++..+.+.|++++|...+++++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 8888888888888877753 4456677777788888888888888888777
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.07 E-value=2.2e-09 Score=120.14 Aligned_cols=173 Identities=11% Similarity=-0.008 Sum_probs=101.6
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 499 LKLGDTSEAYRLQEEML--------AKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLE 570 (729)
Q Consensus 499 ~~~g~~~~A~~l~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 570 (729)
...|++++|++.+++.+ +. .+.+...+..+...+.+.|++++|++.++++++... .+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence 55666666666666665 32 244455666666666666666666666666665532 245566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 571 MGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGL 650 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~ 650 (729)
.|++++|.+.|+++++.. +.+...|..+..+|.+.|++++ ++.|+++.+... .+...|..++.++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666553 3345566666666666666666 666666665421 2455666666666666666666666
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 004814 651 FIDMEEEGILPN-KYTYTILINENCNAGN 678 (729)
Q Consensus 651 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 678 (729)
|+++.+. .|+ ...+..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 6666553 333 3455555555555444
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.05 E-value=9.4e-08 Score=94.22 Aligned_cols=218 Identities=7% Similarity=-0.053 Sum_probs=142.9
Q ss_pred hhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCCChHhHHHHHHH
Q 004814 140 LRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS--MVEQCLLVFNKMLRNGLLPDVKNCNRIIKV 217 (729)
Q Consensus 140 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 217 (729)
.++|+.++++++..+|. ...+|+.-..++...| ++++++..++.++...+. +..+|+.-..+
T Consensus 49 s~~aL~~t~~~L~~nP~---------------~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~i 112 (306)
T 3dra_A 49 SERALHITELGINELAS---------------HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLI 112 (306)
T ss_dssp SHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcH---------------HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHH
Confidence 35788888888888876 3556666666777777 888888888888887765 66677766555
Q ss_pred H----HHC---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 218 L----RDN---GFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ--EALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 218 l----~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
+ ... +++++++++++.+.+.. +-|..+|+--..++.+.|.++ ++++.++++.+.. +-|...|+.-...+
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll 190 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5 555 67888888888888765 567777877777777777777 8888888887763 33666776666556
Q ss_pred HhCCC------HHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHH
Q 004814 289 SRNGE------LEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVE-ALNLEEEMVTRG--VAPTLATYNILIYGLC 359 (729)
Q Consensus 289 ~~~g~------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~~~ 359 (729)
.+.|. ++++.+.+++++... +-|..+|+-+...+.+.|+..+ +.++..++.+.+ -..+...+..+++.|.
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 56555 666777777666654 3366666666666666665333 333444433321 1124455555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 004814 360 KWGRVSDARHRFFEMLR 376 (729)
Q Consensus 360 ~~g~~~~A~~~~~~~~~ 376 (729)
+.|+.++|.++++.+.+
T Consensus 270 ~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHh
Confidence 55666666666665554
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.04 E-value=8.3e-09 Score=100.84 Aligned_cols=81 Identities=15% Similarity=0.133 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCC
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEGILPN----KYTYTILINENCNA----------GNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~pd 697 (729)
..++..|.+.|++++|+..|+++++.. |+ ...+..++.+|... |++++|+..|+++++ ..|+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~--~~p~ 227 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ--IFPD 227 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH--HCCC
Confidence 566788888999999999999988753 32 34677777788766 888999999999883 4454
Q ss_pred H---HHHHHHHHhhhccchhhc
Q 004814 698 Y---CTHSALLLKQLDKDYKVH 716 (729)
Q Consensus 698 ~---~~~~~ll~~~l~~~g~~~ 716 (729)
. .....++..++.+.++.+
T Consensus 228 ~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 228 SPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHhh
Confidence 3 233334355555544443
No 99
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.02 E-value=4.5e-10 Score=99.29 Aligned_cols=144 Identities=10% Similarity=-0.066 Sum_probs=88.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 645 (729)
..+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|+++++... -+...|..++.+|.+.|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchH
Confidence 33445566677777766665542 22344555666777777777777777777766422 25666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHhhhccchh
Q 004814 646 QAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRL-YKEMLDREIEPDYCTHSALLLKQLDKDYK 714 (729)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~pd~~~~~~ll~~~l~~~g~ 714 (729)
+|+..|+++++.. +-+...|..++..|.+.|++++|.+. +++++ .+.|+......+....+.+.|+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al--~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAA--KLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH--HHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777777653 33456677777777777777665544 46666 4566555444444555555553
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.02 E-value=1e-08 Score=88.19 Aligned_cols=130 Identities=16% Similarity=0.183 Sum_probs=84.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..|...|++++|...++++.+.++. +...+..++..+...|++++|...|+++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3455666777777777777777777765433 55566666667777777777777777766544 345556666666677
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 307 (729)
..|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 7777777777776666542 234555666666666666666666666666553
No 101
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.02 E-value=1.4e-07 Score=92.95 Aligned_cols=233 Identities=12% Similarity=0.070 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCC--ChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNG--FSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
.+++.+.....+...-++|+..+++++..++. +..+|+.-..++...| ++++++++++.++... +-+..+|+.-..
T Consensus 34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~ 111 (306)
T 3dra_A 34 QIMGLLLALMKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQL 111 (306)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHH
Confidence 34444444455555667899999999987755 6667888888888888 8899999999888765 556667776555
Q ss_pred HH----Hhc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHhCCCccChhhHHHHHHH
Q 004814 252 SF----CKE---GEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELE--QARGLIRDMLKLGLKVSAHSYNPIICG 322 (729)
Q Consensus 252 ~~----~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~~~~~~~li~~ 322 (729)
.+ .+. +++++++++++++.+.. +-+-.+|+.-.-.+.+.|.++ ++.+.++++++.++ -|..+|+.-...
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 55 444 67888888888887762 336667776666666777776 77777777777653 366666666555
Q ss_pred HHhCCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHhHHHHHHHHH
Q 004814 323 YSEKGL------LVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSD-ARHRFFEMLRKN--VIPDIISYNTLLYGY 393 (729)
Q Consensus 323 ~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~li~~~ 393 (729)
+...|+ ++++++.++++....+. |...|+-+...+.+.|+..+ +.....++...+ -..+...+..+...|
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 555554 55566666555554433 55555555555555555332 222333332211 113444455555555
Q ss_pred HHcCCHHHHHHHHHHHhh
Q 004814 394 CRSGNIGEAFLLFDELRS 411 (729)
Q Consensus 394 ~~~g~~~~A~~l~~~m~~ 411 (729)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 555555555555555443
No 102
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.01 E-value=1.2e-07 Score=92.47 Aligned_cols=243 Identities=12% Similarity=-0.032 Sum_probs=136.6
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 004814 181 LIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ 260 (729)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (729)
+-..-.|.+..++.-..++ ........-.-+.+++...|++... ..-.|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 3345678888888743332 2222222333355777777777642 11133333333333332 222
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-ccChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 261 EALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGL-KVSAHSYNPIICGYSEKGLLVEALNLEEEM 339 (729)
Q Consensus 261 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (729)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667777766654 44555556677777777888888888777766543 124556667777777777777777777777
Q ss_pred HHCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Q 004814 340 VTRGVAP-----TLATYNILIYG--LCKWG--RVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDELR 410 (729)
Q Consensus 340 ~~~g~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 410 (729)
.+. .| +..+...|+.+ ....| ++++|..+|+++.... |+..+-..++.++.+.|++++|...++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 664 33 23444444444 22223 6777777777765543 443333344446667777777777776554
Q ss_pred hCC---------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 004814 411 SRN---------LVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ 447 (729)
Q Consensus 411 ~~~---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 447 (729)
+.. -+-+..+...+|......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 320 02244555444444444555 666666666665
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=3.1e-09 Score=96.85 Aligned_cols=162 Identities=14% Similarity=0.066 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 004814 126 VFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL 205 (729)
Q Consensus 126 ~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (729)
.+...+..+.+.|++++|...++++++.+|. +...+..++.+|.+.|++++|+..|+++.+..+
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---------------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p- 71 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS---------------RGDVKLAKADCLLETKQFELAQELLATIPLEYQ- 71 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT---------------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-
Confidence 3455666777778888888877777777665 466677777777777888888777777766543
Q ss_pred CChHhHHHHHHH-HHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 004814 206 PDVKNCNRIIKV-LRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSP-NGVTYNV 283 (729)
Q Consensus 206 ~~~~~~~~ll~~-l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ 283 (729)
+...+...... +...+...+|...|++..+.. +.+...+..+...+...|++++|...|+++.+....+ +...+..
T Consensus 72 -~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 72 -DNSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred -ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 33332222211 122223344566666666543 3456666666777777777777777777666653221 2445666
Q ss_pred HHHHHHhCCCHHHHHHHHHHHH
Q 004814 284 LITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 284 li~~~~~~g~~~~A~~~~~~m~ 305 (729)
+...+...|+.++|...|++.+
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHH
Confidence 6666666666666666666554
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.01 E-value=1.6e-09 Score=95.62 Aligned_cols=143 Identities=10% Similarity=-0.043 Sum_probs=83.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhH
Q 004814 132 EILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNC 211 (729)
Q Consensus 132 ~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 211 (729)
.++...|++++|+..+++++..+|. ++..+..++.+|.+.|++++|++.|+++++..+. +..+|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~---------------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~ 68 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQ---------------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAH 68 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHH---------------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 3344455666666666666655554 2334455666677777777777777777666544 56666
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHh
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALEL-LWEMQGRGCSPNGVTYNVLITGFSR 290 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~~p~~~~~~~li~~~~~ 290 (729)
..+..++.+.|++++|+..|++.++.. +.+..+|..+...+.+.|++++|.+. +++..+.. +-+..+|......+.+
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 666666666666666666666666654 34556666666666666666554443 35555431 2244455555555444
Q ss_pred CC
Q 004814 291 NG 292 (729)
Q Consensus 291 ~g 292 (729)
.|
T Consensus 147 ~G 148 (150)
T 4ga2_A 147 EG 148 (150)
T ss_dssp CC
T ss_pred hC
Confidence 44
No 105
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=4.5e-08 Score=93.14 Aligned_cols=191 Identities=10% Similarity=-0.038 Sum_probs=125.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..++..+.+.|++++|...|++++...|.. ......+..++.+|.+.|++++|+..|+++++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFG------------PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 45667777888999999999999999998876652 123567778889999999999999999999987
Q ss_pred CCCCCh--HhHHHHHHHHHH------------------CCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 004814 203 GLLPDV--KNCNRIIKVLRD------------------NGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA 262 (729)
Q Consensus 203 ~~~~~~--~~~~~ll~~l~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (729)
.+.... .++..+..++.+ .|++++|...|+++++.. |.+..++.......
T Consensus 71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~--------- 140 (225)
T 2yhc_A 71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV--------- 140 (225)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH---------
T ss_pred CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH---------
Confidence 654221 244455555544 456667777777666643 22222222111100
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc--ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 263 LELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV--SAHSYNPIICGYSEKGLLVEALNLEEEMV 340 (729)
Q Consensus 263 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (729)
.+...+ ......+...|.+.|++++|...|+++++..+.. ...++..+..+|.+.|+.++|.+.++.+.
T Consensus 141 -~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 141 -FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp -HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 000000 0011345667788888888888888888764221 12467778888888888888888888887
Q ss_pred HCCC
Q 004814 341 TRGV 344 (729)
Q Consensus 341 ~~g~ 344 (729)
..++
T Consensus 212 ~~~~ 215 (225)
T 2yhc_A 212 ANSS 215 (225)
T ss_dssp HCCS
T ss_pred hhCC
Confidence 7654
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=9.2e-09 Score=115.15 Aligned_cols=173 Identities=10% Similarity=-0.004 Sum_probs=145.8
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 464 CKMGNLSMAREFFNEML--------RKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCK 535 (729)
Q Consensus 464 ~~~g~~~~A~~~~~~~~--------~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~ 535 (729)
...|++++|++.++++. +.. ..+...+..+...+.+.|++++|+..++++++.+ +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67899999999999998 432 2255678888899999999999999999999874 6688899999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 004814 536 LGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMY 615 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 615 (729)
.|++++|.+.|+++++..+. +...+..+..++.+.|++++ .+.|+++++.+ +.+...|..+..++.+.|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999987533 66788899999999999999 99999999875 56788999999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 004814 616 FSEMQVKGIRPN-VITYNALINGLCRLRR 643 (729)
Q Consensus 616 ~~~~~~~g~~p~-~~~~~~l~~~~~~~g~ 643 (729)
|+++.+. .|+ ...+..++.++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9999875 455 5577778888776665
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.97 E-value=6.4e-08 Score=90.99 Aligned_cols=176 Identities=14% Similarity=0.030 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 004814 506 EAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMG----DLRRGRDLF 581 (729)
Q Consensus 506 ~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 581 (729)
+|++.|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666654 66666677777777777777777777777654 45566666666666 5 777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 004814 582 NNMLRKGLSPTLVTYTVLIHAHAA----RGRLELAFMYFSEMQVKGIR-PNVITYNALINGLCR----LRRIDQAYGLFI 652 (729)
Q Consensus 582 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 652 (729)
++..+.| +...+..|...|.. .+++++|+++|++..+.|.. .+...+..|...|.. .++.++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 55666777777765 67788888888887775421 015667777777777 677888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 004814 653 DMEEEGILPNKYTYTILINENCNA-G-----NWQEALRLYKEMLDRE 693 (729)
Q Consensus 653 ~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~ 693 (729)
+..+. +.+...+..|...|... | ++++|+..|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88775 23445666677766653 3 7888888888877554
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.94 E-value=2.1e-08 Score=99.43 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=119.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...+..+...+.+.|++++|...+++++..+|+ +...+..++.+|.+.|++++|...++++..
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---------------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---------------NGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---------------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---------------chhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 45667777888888888888888888888888776 466777788888888888888888888876
Q ss_pred CCCCCChHhHH-HHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHH
Q 004814 202 NGLLPDVKNCN-RIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCS-PNGV 279 (729)
Q Consensus 202 ~~~~~~~~~~~-~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~ 279 (729)
..+ +..... .....+.+.++.++|...|++..+.. +.+...+..+...+...|++++|...|.++.+.... .+..
T Consensus 180 ~~p--~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 QDQ--DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp GGC--SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred hhc--chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 543 333322 23334666777777888888777665 556777778888888888888888888887775211 1245
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 280 TYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 280 ~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
.+..++..+...|+.++|...+++.+
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 67777777777777777777776654
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.92 E-value=6.5e-08 Score=91.98 Aligned_cols=186 Identities=10% Similarity=-0.062 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--hHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCCh---hhHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--VKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSI---VTYN 247 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~ 247 (729)
+..+..++..+.+.|++++|+..|+++++..+... ...+..++.++.+.|++++|+..|+++++.. +.+. .++.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 45566778889999999999999999998654322 3567788999999999999999999998764 2222 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004814 248 TMLDSFCK------------------EGEMQEALELLWEMQGRGCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLG 308 (729)
Q Consensus 248 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 308 (729)
.+..++.+ .|++++|...|+++.+. .|+ ...+.+..... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----------~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----------FLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----------HHHHHH----
Confidence 55555554 45677777777777665 232 22222211100 000000
Q ss_pred CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 309 LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT--LATYNILIYGLCKWGRVSDARHRFFEMLRKNV 379 (729)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 379 (729)
......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123567889999999999999999998643311 25688899999999999999999999988764
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.91 E-value=1.4e-07 Score=88.57 Aligned_cols=175 Identities=16% Similarity=0.054 Sum_probs=93.5
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 004814 472 AREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLG----SLEEANELLR 547 (729)
Q Consensus 472 A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 547 (729)
|.+.|++..+.| ++..+..+...|...+++++|+..|+...+.| +...+..+...|.. + ++++|.+.|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 334444444432 34444444444444455555555555544443 34444445555544 4 5566666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHH----cCCHHHHHHHHHH
Q 004814 548 KMVGDGFIPDHITYTSIIHASLE----MGDLRRGRDLFNNMLRKGLS-PTLVTYTVLIHAHAA----RGRLELAFMYFSE 618 (729)
Q Consensus 548 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 618 (729)
+..+.| +...+..+...|.. .+++++|.+.|++..+.|.. .+...+..|...|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 655543 34455555555554 55666666666666655410 015556666666666 5666777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 004814 619 MQVKGIRPNVITYNALINGLCRL-R-----RIDQAYGLFIDMEEEG 658 (729)
Q Consensus 619 ~~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g 658 (729)
..+. ..+...+..|...|... | +.++|...|++..+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 6664 12344555566665543 2 6677777777776665
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.89 E-value=8.8e-09 Score=93.77 Aligned_cols=159 Identities=12% Similarity=-0.044 Sum_probs=79.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH-HHh
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS-FCK 255 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~~~ 255 (729)
..++..+.+.|++++|+..|+++++..+. +...+..+..++.+.|++++|...|+++.+.. |+...+..+... +.+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 34555666667777777777666654433 45556666666666666666666666665442 233322222111 111
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCcc-ChhhHHHHHHHHHhCCCHHHHHH
Q 004814 256 EGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKV-SAHSYNPIICGYSEKGLLVEALN 334 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 334 (729)
.+...+|...+++..+.. +.+...+..+...+...|++++|...|+++++..+.+ +...+..+...+...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 122223455555554431 1234455555555555555555555555555443221 23344445555555555555555
Q ss_pred HHHHH
Q 004814 335 LEEEM 339 (729)
Q Consensus 335 ~~~~m 339 (729)
.|++.
T Consensus 166 ~y~~a 170 (176)
T 2r5s_A 166 KYRRQ 170 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=3.5e-08 Score=97.78 Aligned_cols=165 Identities=9% Similarity=-0.012 Sum_probs=102.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH-H
Q 004814 520 PPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYT-V 598 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 598 (729)
+.+...+..+...+.+.|++++|...|+++++..+. +...+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 344555556666666777777777777776665422 45566666667777777777777776665542 3333222 2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPN---KYTYTILINENCN 675 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~ 675 (729)
....+...++.++|...++++.+.. +.+...+..+...|...|++++|+..+.++++.. |+ ...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHHHHHHH
Confidence 2223555666666777777766652 2255666677777777777777777777777643 22 4466677777777
Q ss_pred cCCHHHHHHHHHHHH
Q 004814 676 AGNWQEALRLYKEML 690 (729)
Q Consensus 676 ~g~~~~A~~~~~~m~ 690 (729)
.|+.++|...|++.+
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 777777777776654
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.88 E-value=3.1e-08 Score=108.88 Aligned_cols=154 Identities=8% Similarity=-0.073 Sum_probs=113.2
Q ss_pred cCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 004814 137 SGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIK 216 (729)
Q Consensus 137 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 216 (729)
.|++++|...++++++.+|. +...+..++..|.+.|++++|++.|++.++..+. +...+..+..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 65 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ---------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGR 65 (568)
T ss_dssp -------------------C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 46788888888888887765 4667888889999999999999999999987654 6778888888
Q ss_pred HHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CC
Q 004814 217 VLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRN---GE 293 (729)
Q Consensus 217 ~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~ 293 (729)
++...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.. +.+...+..+...+... |+
T Consensus 66 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~ 143 (568)
T 2vsy_A 66 VRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRA 143 (568)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhcccc
Confidence 9999999999999999988765 5567788889999999999999999999888762 33567788888888888 89
Q ss_pred HHHHHHHHHHHHhCC
Q 004814 294 LEQARGLIRDMLKLG 308 (729)
Q Consensus 294 ~~~A~~~~~~m~~~~ 308 (729)
.++|.+.+++.++.+
T Consensus 144 ~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 144 LDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999888765
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=4.5e-08 Score=107.57 Aligned_cols=154 Identities=12% Similarity=0.053 Sum_probs=96.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 004814 501 LGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDL 580 (729)
Q Consensus 501 ~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 580 (729)
.|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+++.++... .+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 366777777777776653 45567777777777777777777777777776643 2566777777777777777777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 004814 581 FNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL---RRIDQAYGLFIDMEEE 657 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 657 (729)
+++..+.. +.+...+..+..+|...|++++|.+.++++.+.. +.+...+..+..++... |+.++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77777664 4456677777777777777777777777777653 22456677777777777 7777777777777775
Q ss_pred C
Q 004814 658 G 658 (729)
Q Consensus 658 g 658 (729)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 115
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.85 E-value=1.1e-06 Score=87.41 Aligned_cols=172 Identities=13% Similarity=0.001 Sum_probs=126.0
Q ss_pred CChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCCChHhHHHHHH
Q 004814 138 GLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS-MVEQCLLVFNKMLRNGLLPDVKNCNRIIK 216 (729)
Q Consensus 138 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 216 (729)
+..++|+.++++++..+|. +..+|+.-..++...| .+++++..++.++...++ +..+|+.-..
T Consensus 68 e~se~AL~lt~~~L~~nP~---------------~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~w 131 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA---------------HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLL 131 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCch---------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3345788888888888886 4556666666666777 599999999999988766 7778888877
Q ss_pred HHHHC-C-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHH
Q 004814 217 VLRDN-G-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQ--------EALELLWEMQGRGCSPNGVTYNVLIT 286 (729)
Q Consensus 217 ~l~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~li~ 286 (729)
++.+. + ++++++++++.+++.. +.|..+|+--..++.+.|.++ ++++.++++.+.. .-|...|+....
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~ 209 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWY 209 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77776 6 8889999999998876 567778877666666666665 7888888887763 336777777777
Q ss_pred HHHhCCC-------HHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC
Q 004814 287 GFSRNGE-------LEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL 328 (729)
Q Consensus 287 ~~~~~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 328 (729)
.+.+.++ ++++.+.+++++... +-|..+|+-+-..+.+.|+
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 7766665 577777777777665 3366777766666655554
No 116
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.82 E-value=7.5e-08 Score=81.81 Aligned_cols=113 Identities=15% Similarity=0.098 Sum_probs=81.4
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 672 (729)
...+...+..|.+.|++++|++.|+++++.. +.+...|..++.+|.+.|++++|+..+++.++.+ +.+...|..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3456667777888888888888888877753 2366777778888888888888888888887764 4456677888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhhh
Q 004814 673 NCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQL 709 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~l 709 (729)
+...|++++|++.|++++ .+.|+......-|..+|
T Consensus 91 ~~~~~~~~~A~~~~~~al--~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDAL--QVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHH--HHCcCCHHHHHHHHHhc
Confidence 888888888888888887 56676554444334443
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=1.3e-07 Score=82.84 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...+..++..|.+.|++++|+..|+++++..+. +...|..+..+|...|++++|+..|++..+.. |.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 4556677777777888888888888888776654 66777777777788888888888888777765 456677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 004814 252 SFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+|.+.|++++|...|++..+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888777765
No 118
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.79 E-value=2.2e-06 Score=85.24 Aligned_cols=184 Identities=12% Similarity=-0.001 Sum_probs=134.1
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNG-FSVKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
+++.+.....+.+..++|++.+++++..++. +..+|+.-..++...| .+++++++++.++... +-+..+|+.-...+
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3334444445556668999999999998765 6777998888888888 5999999999999876 66788888888877
Q ss_pred Hhc-C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHhCCCccChhhHHHHHHHH
Q 004814 254 CKE-G-EMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELE--------QARGLIRDMLKLGLKVSAHSYNPIICGY 323 (729)
Q Consensus 254 ~~~-g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~ 323 (729)
.+. + ++++++++++++.+.. +-|..+|+.-.-.+.+.|.++ ++.+.++++++..+ -|..+|+.....+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL 211 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLR 211 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 776 7 8899999999998873 346777776555555555555 78888888887753 3777787777777
Q ss_pred HhCCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 004814 324 SEKGL-------LVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGR 363 (729)
Q Consensus 324 ~~~g~-------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 363 (729)
.+.++ ++++++.++++....+. |...|+-+-..+.+.|+
T Consensus 212 ~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 212 VSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 77665 56777777777665443 66666665555555554
No 119
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.79 E-value=9.3e-08 Score=95.80 Aligned_cols=132 Identities=8% Similarity=-0.010 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC-C----hHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CCCC-Ch
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP-D----VKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GIKP-SI 243 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~~~-~~ 243 (729)
..|...+..|...|++++|...|.++.+..... + ..+++.+..+|.+.|++++|+..|++.++. |-+. -.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 116 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAA 116 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344455566677777777777777766531110 1 234556666666666777666666665432 1000 12
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 004814 244 VTYNTMLDSFCKEGEMQEALELLWEMQGRG----CSP-NGVTYNVLITGFSRNGELEQARGLIRDMLK 306 (729)
Q Consensus 244 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 306 (729)
.+++.+...|.. |++++|+..|++..+.. ..+ ...+++.+...|.+.|++++|.+.|++.++
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555 55655555555544320 000 022344444555555555555555554443
No 120
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=1.5e-07 Score=94.31 Aligned_cols=171 Identities=10% Similarity=-0.008 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL 204 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 204 (729)
..|...+.++...|++++|...+.+++...+.. .+.......+..++.+|.+.|++++|+..|++.++.-.
T Consensus 37 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~ 107 (307)
T 2ifu_A 37 SEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN---------RSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYV 107 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 356677788999999999999999988765431 01112356788899999999999999999999876311
Q ss_pred ---CC--ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--
Q 004814 205 ---LP--DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP-----SIVTYNTMLDSFCKEGEMQEALELLWEMQGR-- 272 (729)
Q Consensus 205 ---~~--~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 272 (729)
.+ -..+++.+..+|.. |++++|+..|++.++..... ...+++.+...+.+.|++++|+..|++..+.
T Consensus 108 ~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 108 ENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp TTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 13467788888888 99999999999987632111 1457888999999999999999999998763
Q ss_pred --CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 273 --GCSPN-GVTYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 273 --~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
+..+. ...+..++..+...|++++|...|++.+
T Consensus 187 ~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 187 EMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 11111 2256666677777899999999998887
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.75 E-value=1.6e-07 Score=79.70 Aligned_cols=94 Identities=11% Similarity=-0.073 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCK 255 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (729)
+..++..|.+.|++++|++.|+++++..+. +...|..+..++.+.|++++|+..|++.++.+ +.+..+|..+..++..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 333444444444444444444444444332 34444444444444555555555554444433 3334444455555555
Q ss_pred cCCHHHHHHHHHHHHh
Q 004814 256 EGEMQEALELLWEMQG 271 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~ 271 (729)
.|++++|.+.|++..+
T Consensus 94 ~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ 109 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 122
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=2.5e-07 Score=88.96 Aligned_cols=203 Identities=10% Similarity=-0.035 Sum_probs=150.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHhccchhhhHHHh-hc-C--CCC
Q 004814 101 REKPRIALRFFRWVETQPGVKRDEFVFCTI-------LEILIESGLLRSAYWVVETVVCVNMHGILDVLI-GG-G--LSS 169 (729)
Q Consensus 101 ~~~~~~al~~f~~~~~~~~~~~~~~~~~~l-------~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~-~~-~--~~~ 169 (729)
.+++..|+..|..+.+.. +-....|..+ ...|.+.++..+++..+.+.+...|..+...+- .+ + +..
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578999999999987644 3578889888 788888888899998899988877763211111 11 1 111
Q ss_pred --cchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC--hhh
Q 004814 170 --CVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS--IVT 245 (729)
Q Consensus 170 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 245 (729)
.....+...++..+...|++++|.+.|+.+...++ +......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 12466777788889999999999999999887663 33366667778899999999999998665532 111 236
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004814 246 YNTMLDSFCKEGEMQEALELLWEMQGRGCSPN--GVTYNVLITGFSRNGELEQARGLIRDMLKLG 308 (729)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 308 (729)
+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77788889999999999999998875433254 3356667778888899999999999998864
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.73 E-value=3.7e-08 Score=97.18 Aligned_cols=99 Identities=13% Similarity=-0.108 Sum_probs=67.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..++..+.+.|++++|...+++++..+|. +..++..++.+|.+.|++++|+..++++++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4566667777777777777777777777766654 3556666777777777777777777777766
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
.+. +...+..+..++...|++++|...|++..+.
T Consensus 68 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 68 DGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 543 5566666677777777777777777666553
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=4.1e-07 Score=85.41 Aligned_cols=132 Identities=9% Similarity=-0.045 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAH 603 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 603 (729)
..+..+...+...|++++|...+++.+ .|+...+..+...+...|++++|.+.+++..+.. +.+...|..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 344556666777777777777777663 4466677777777777777777777777777654 44566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 004814 604 AARGRLELAFMYFSEMQVKGIRPNV----------------ITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNK 663 (729)
Q Consensus 604 ~~~g~~~~A~~~~~~~~~~g~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 663 (729)
...|++++|+..|+++.+.... +. ..+..++.+|.+.|++++|...++++.+. .|+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 7777777777777777765221 22 56666777777777777777777777663 4554
No 125
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.72 E-value=1.7e-07 Score=90.02 Aligned_cols=189 Identities=10% Similarity=-0.071 Sum_probs=142.8
Q ss_pred cCCCHHHHHHHHHHHHHCCCCCChHhHHHH-------HHHHHHCCChhHHHHHHHHHHhCCCCCC---------------
Q 004814 185 KKSMVEQCLLVFNKMLRNGLLPDVKNCNRI-------IKVLRDNGFSVKAREVYRMMGEFGIKPS--------------- 242 (729)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------l~~l~~~g~~~~A~~~~~~~~~~~~~~~--------------- 242 (729)
..++.++|.+.|.++.+..+. ....|+.+ ..++.+.++..++...+..-.+. .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 689999999999999998765 77889888 67888888888888777776652 221
Q ss_pred -------hhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccC--h
Q 004814 243 -------IVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVS--A 313 (729)
Q Consensus 243 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~ 313 (729)
...+..+...+...|++++|.+.|+.+... .|+......+...+.+.|++++|+..|+...+.. .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 122345667788899999999999988775 3444466666778889999999999998665432 111 3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 314 HSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPT--LATYNILIYGLCKWGRVSDARHRFFEMLRKNV 379 (729)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 379 (729)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....+
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4677888889999999999999998875432243 33566677888889999999999999888653
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=5.3e-06 Score=82.27 Aligned_cols=162 Identities=14% Similarity=0.012 Sum_probs=119.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHH
Q 004814 529 LVHGLCKLGSLEEANELLRKMVGDGF-IPDH----ITYTSIIHASLEMGDLRRGRDLFNNMLRKGLS-PT----LVTYTV 598 (729)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 598 (729)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...++++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788899999999888876432 2221 13334666677778999999999998874222 22 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVK-----GIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEE----GILPN-KYTYT 667 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~-----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~ 667 (729)
++..|...|++++|+..++++.+. +..+. ..++..++..|.+.|++++|..++++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 899999999999999999998741 11122 336788899999999999999999988762 22222 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 004814 668 ILINENCNAG-NWQEALRLYKEML 690 (729)
Q Consensus 668 ~l~~~~~~~g-~~~~A~~~~~~m~ 690 (729)
.++.++.+.| ++++|.+.+++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 8999999999 4799999999987
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.70 E-value=2.9e-08 Score=87.17 Aligned_cols=104 Identities=13% Similarity=-0.026 Sum_probs=86.0
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
+...+..+...+.+.|++++|+..|+++.+.. +.+...|..++.+|...|++++|+..|+++.+.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 45577788888889999999999999998863 2367788889999999999999999999998864 556778888999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 672 ENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 672 ~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+|.+.|++++|+..|++++ .+.||..
T Consensus 113 ~~~~lg~~~eA~~~~~~al--~l~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVI--QHSNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCCCHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HhCCCHH
Confidence 9999999999999999998 4566654
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.69 E-value=4.5e-07 Score=81.06 Aligned_cols=128 Identities=12% Similarity=-0.075 Sum_probs=64.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..|...|++++|...|++.++..+. +...+..+..++...|++++|...|++..+.. +.+..++..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3444445555555555555555555544322 34445555555555555555555555555443 334455555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhCCCHHHHHHHHHHHH
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNV--LITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 305 (729)
..|++++|.+.|++..+.. +.+...+.. ++..+.+.|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 5556666655555555431 112333322 2222445556666665555543
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=1.2e-06 Score=82.17 Aligned_cols=129 Identities=13% Similarity=-0.012 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..|...|++++|+..|+++. .|+...+..+..++.+.|++++|...|++..+.. +.+..++..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34557778889999999999999885 4578889999999999999999999999998865 567888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNG----------------VTYNVLITGFSRNGELEQARGLIRDMLKLGL 309 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 309 (729)
+.|++++|.+.|++..+.. +.+. ..+..+...+.+.|++++|.+.+++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999998752 2222 6778888899999999999999999988653
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.65 E-value=1e-06 Score=78.66 Aligned_cols=129 Identities=8% Similarity=-0.018 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 004814 559 ITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGL 638 (729)
Q Consensus 559 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 638 (729)
..+..+...+...|++++|...+++..+.. +.+..++..++.++...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666777778888888888888877764 4567778888888888888888888888887753 23567788888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 004814 639 CRLRRIDQAYGLFIDMEEEGILPNKYTYT--ILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 639 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
...|++++|...++++.+.. +.+...+. .++..+.+.|++++|++.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888753 33455553 33444677888888888887764
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.65 E-value=4.9e-07 Score=77.29 Aligned_cols=120 Identities=13% Similarity=-0.006 Sum_probs=81.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
+.+..++..++.++...|++++|...+++++..+|. +..++..++.+|...|++++|+..++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 77 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---------------DAKLYSNRAACYTKLLEFQLALKDCEECI 77 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---------------CHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------cHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445677777777777788888888777777776654 35566677777777777777777777777
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG 257 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (729)
+..+. +...+..+..++.+.|++++|.+.|++..+.. +.+...+..+...+.+.|
T Consensus 78 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 78 QLEPT-FIKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HhCCC-chHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 75543 55666667777777777777777777766543 334455555555555444
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.63 E-value=7.9e-08 Score=84.40 Aligned_cols=107 Identities=14% Similarity=-0.053 Sum_probs=73.0
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 004814 581 FNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGIL 660 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 660 (729)
+++++... +.+...+..+...+...|++++|+..|+++.... +.+...|..++.+|...|++++|+..|+++++.+ +
T Consensus 10 ~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p 86 (148)
T 2vgx_A 10 IAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-I 86 (148)
T ss_dssp HHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 44444432 2345566666777777777777777777777653 2256677777777777777777777777777753 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 661 PNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 661 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+...+..++.+|...|++++|+..|++++
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455677777777777777777777777777
No 133
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.63 E-value=2.5e-06 Score=84.68 Aligned_cols=165 Identities=13% Similarity=-0.007 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--hhh
Q 004814 526 YNVLVHGLCKLGSLEEANELLRKMVGDGFIPDH-----ITYTSIIHASLEMGDLRRGRDLFNNMLRKGL---SPT--LVT 595 (729)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~~ 595 (729)
+...+..+...|++++|.+.+.+.++....... ..+..+...+...|++++|...+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334555666777777777777766664322111 1233455566777888888888888775421 111 347
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HH
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVK-GIRPN-----VITYNALINGLCRLRRIDQAYGLFIDMEEEG----ILPN-KY 664 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~ 664 (729)
|+.++..|...|++++|...++++.+. ...|+ ..++..++..|...|++++|+.++++..+.. .... ..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 788888888889999998888888731 00122 2577888888999999999999998887531 1111 45
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEA-LRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A-~~~~~~m~ 690 (729)
+|..++.+|.+.|++++| ...+++++
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788888899999999999 77788876
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.62 E-value=2.2e-07 Score=81.49 Aligned_cols=99 Identities=15% Similarity=0.024 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...+..++..|.+.|++++|+..|+++++..+. +...|..+..++...|++++|+..|++.++.. +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4556667777788888888888888888776654 66677777777788888888888888777654 455667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 004814 252 SFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~ 272 (729)
++...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777777654
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=1.1e-07 Score=96.33 Aligned_cols=132 Identities=12% Similarity=-0.011 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--------------hHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD--------------VKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
....+..++..|.+.|++++|+..|+++++..+... ...|..+..++.+.|++++|+..|+++++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456778888889999999999999999988664422 356667777777777777777777777665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHH
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQA-RGLIRDML 305 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~ 305 (729)
. +.+..+|..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.|+.++| ..+++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4456667777777777777777777777766652 23455666666666666666666 33455443
No 136
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.61 E-value=2.4e-06 Score=84.81 Aligned_cols=168 Identities=13% Similarity=0.050 Sum_probs=74.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLL- 205 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 205 (729)
+...+..+...|++++|...+++++...+...... .....+..++..|...|++++|+..++++++....
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ---------QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH---------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH---------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence 33445555566666666666665555432210000 01122333445555556666666666665542211
Q ss_pred --CC--hHhHHHHHHHHHHCCChhHHHHHHHHHHh---CC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 004814 206 --PD--VKNCNRIIKVLRDNGFSVKAREVYRMMGE---FG-IKP--SIVTYNTMLDSFCKEGEMQEALELLWEMQGR--- 272 (729)
Q Consensus 206 --~~--~~~~~~ll~~l~~~g~~~~A~~~~~~~~~---~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 272 (729)
+. ..+++.+...|...|++++|...|+++.+ .. -.+ ...+++.++..|.+.|++++|...+++..+.
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 11 22445555555555555555555555441 10 000 0134445555555555555555555544321
Q ss_pred -CCCCC-HHHHHHHHHHHHhCCCHHHH-HHHHHH
Q 004814 273 -GCSPN-GVTYNVLITGFSRNGELEQA-RGLIRD 303 (729)
Q Consensus 273 -~~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~ 303 (729)
+.... ..+|..+...|.+.|++++| ...+++
T Consensus 229 ~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 00000 23444444445555555554 333443
No 137
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=2.3e-07 Score=84.34 Aligned_cols=120 Identities=10% Similarity=0.111 Sum_probs=82.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--H
Q 004814 569 LEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALING-LCRLRRI--D 645 (729)
Q Consensus 569 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~-~~~~g~~--~ 645 (729)
...|++++|...+++..+.. +.+...|..+...|...|++++|...|+++.+.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776654 4566777777777777788888888877777653 2256666777777 6677777 8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 646 QAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+|...++++.+.. +.+...+..++.++...|++++|...++++++
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 8888888777753 44566777777778888888888888888773
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.60 E-value=2.3e-07 Score=91.53 Aligned_cols=98 Identities=12% Similarity=-0.038 Sum_probs=57.4
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 004814 488 RFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHA 567 (729)
Q Consensus 488 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 567 (729)
...+..+...+.+.|++++|+..++..++.. +.+...|..+...+.+.|++++|...++++++... .+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 3445555556666666666666666665542 34555666666666666666666666666665432 244555566666
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 004814 568 SLEMGDLRRGRDLFNNMLRK 587 (729)
Q Consensus 568 ~~~~g~~~~A~~~~~~~~~~ 587 (729)
+...|++++|...|++..+.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666665543
No 139
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.60 E-value=1.2e-06 Score=73.77 Aligned_cols=113 Identities=15% Similarity=0.111 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
...+..++..|...|++++|.+.|+++.+..+. +...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 456667777777788888888888877765433 55666677777777777777777777776654 4456666677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 004814 253 FCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGF 288 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 288 (729)
+.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 777777777777777766542 22344444444433
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.60 E-value=2.2e-07 Score=84.45 Aligned_cols=121 Identities=11% Similarity=0.063 Sum_probs=86.8
Q ss_pred HhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHH
Q 004814 135 IESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRI 214 (729)
Q Consensus 135 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 214 (729)
...|++++|...+++++..+|. +...+..++.+|...|++++|+..|+++.+..+. +...+..+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 84 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ---------------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAAL 84 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 4467777788888887777665 4567777888888888888888888888776543 56666677
Q ss_pred HHH-HHHCCCh--hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 215 IKV-LRDNGFS--VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 215 l~~-l~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
..+ +...|++ ++|...|+++.+.. +.+...+..+...+...|++++|...|+++.+.
T Consensus 85 a~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 85 ATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777 6677777 88888888877754 445667777778888888888888888877765
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.60 E-value=5.4e-07 Score=76.64 Aligned_cols=116 Identities=11% Similarity=-0.084 Sum_probs=57.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFC 254 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (729)
.+..++..+...|++++|+..|+++.+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444444555555555555555555443322 34444455555555555555555555554432 333445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 004814 255 KEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGE 293 (729)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 293 (729)
+.|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus 92 ~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 5555555555555554431 2234444445555544443
No 142
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.59 E-value=8.6e-07 Score=74.58 Aligned_cols=96 Identities=20% Similarity=0.219 Sum_probs=55.6
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 672 (729)
...+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+..++..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555555666666666666666655542 2244555566666666666666666666665542 3345555666666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004814 673 NCNAGNWQEALRLYKEML 690 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~ 690 (729)
+...|++++|...+++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 666666666666666665
No 143
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.58 E-value=2.4e-05 Score=77.47 Aligned_cols=174 Identities=10% Similarity=-0.031 Sum_probs=125.1
Q ss_pred HHhcCChh-hHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHC
Q 004814 134 LIESGLLR-SAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKS----------MVEQCLLVFNKMLRN 202 (729)
Q Consensus 134 l~~~g~~~-~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~ 202 (729)
..+.|.++ +|+.+++.++..+|.. ..+|+.-..++...| .+++++.+++.++..
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~nP~~---------------ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~ 103 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGANPDF---------------ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV 103 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTCTTC---------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchh---------------HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh
Confidence 34566665 7899999999998873 223332222222222 268999999999998
Q ss_pred CCCCChHhHHHHHHHHHHCCC--hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHH
Q 004814 203 GLLPDVKNCNRIIKVLRDNGF--SVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGE-MQEALELLWEMQGRGCSPNGV 279 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~ 279 (729)
.+. +..+|+.-..++.+.++ +++++.+++.+.+.. +-|..+|+--..++...|. ++++++.++++.+.. +-|..
T Consensus 104 ~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~S 180 (331)
T 3dss_A 104 NPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYS 180 (331)
T ss_dssp CTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHH
T ss_pred CCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHH
Confidence 766 88889988888888884 889999999999876 6688889888888888888 689999999998874 44777
Q ss_pred HHHHHHHHHHhC--------------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC
Q 004814 280 TYNVLITGFSRN--------------GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK 326 (729)
Q Consensus 280 ~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 326 (729)
.|+.....+.+. +.++++.+.+...+... +-|..+|+-+-..+.+.
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 887776666554 34667777777777665 33666666554444443
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=3.5e-06 Score=83.61 Aligned_cols=165 Identities=5% Similarity=-0.022 Sum_probs=104.2
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-CChH----hHHHHHHHHHHCCChhHHHHHHHHHHhCCCC-CC----hhh
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLL-PDVK----NCNRIIKVLRDNGFSVKAREVYRMMGEFGIK-PS----IVT 245 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~-~~----~~~ 245 (729)
+...+..+...|++++|...+++..+.... |+.. .+..+...+...|++++|+..|+++.+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 334567788899999999999998874322 2211 2334566666777888888888888763222 22 225
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----Ccc-Chh
Q 004814 246 YNTMLDSFCKEGEMQEALELLWEMQG----R-GCSPN-GVTYNVLITGFSRNGELEQARGLIRDMLKLG----LKV-SAH 314 (729)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~-~~~ 314 (729)
++.+...|...|++++|...|+++.+ . +..+. ..++..+...|.+.|++++|...+++.++.. ..+ -..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 77788888888888888888877763 1 11122 2256667777777777777777777766421 111 134
Q ss_pred hHHHHHHHHHhCCC-HHHHHHHHHHHH
Q 004814 315 SYNPIICGYSEKGL-LVEALNLEEEMV 340 (729)
Q Consensus 315 ~~~~li~~~~~~g~-~~~A~~~~~~m~ 340 (729)
+|..+...|.+.|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55666666666663 466666665554
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=5.3e-07 Score=83.82 Aligned_cols=156 Identities=10% Similarity=-0.015 Sum_probs=98.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHHcCCH
Q 004814 535 KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLS-PTLVTYTVLIHAHAARGRL 609 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 609 (729)
..|++++|.+.++.+... ......++..+...+...|++++|...+++.... +.. ....++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456677777644443331 2224556666777777777777777777766652 111 2245667777778888888
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC
Q 004814 610 ELAFMYFSEMQVK----GIRP--NVITYNALINGLCRLRRIDQAYGLFIDMEEEGI-LPN----KYTYTILINENCNAGN 678 (729)
Q Consensus 610 ~~A~~~~~~~~~~----g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~l~~~~~~~g~ 678 (729)
++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+..- ..+ ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888776653 1111 133567777888888888888888887764210 112 2245677788888888
Q ss_pred HHHHHHHHHHHHH
Q 004814 679 WQEALRLYKEMLD 691 (729)
Q Consensus 679 ~~~A~~~~~~m~~ 691 (729)
+++|.+.++++++
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888773
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.55 E-value=7.8e-07 Score=75.99 Aligned_cols=97 Identities=11% Similarity=0.046 Sum_probs=58.6
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 34455556666666666666666666666542 1245556666666666666666666666666542 334556666666
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 004814 672 ENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 672 ~~~~~g~~~~A~~~~~~m~ 690 (729)
++.+.|++++|++.+++++
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 6666666666666666666
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.1e-06 Score=74.53 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=69.7
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 672 (729)
...|..++..+.+.|++++|+..|++.++.. +.+...|..++.+|.+.|++++|+..+++.++.+ +.+...|..++.+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456666677777777777777777777653 2356677777777778888888888887777753 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 004814 673 NCNAGNWQEALRLYKEML 690 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~ 690 (729)
+...|++++|+..|++++
T Consensus 82 ~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 82 QIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHH
Confidence 888888888888888777
No 148
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.53 E-value=2e-06 Score=72.98 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 004814 561 YTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR 640 (729)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 640 (729)
+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3333444444444444444444444332 2233344444444444444444444444444321 1123344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 004814 641 LRRIDQAYGLFIDMEE 656 (729)
Q Consensus 641 ~g~~~~A~~~~~~m~~ 656 (729)
.|++++|...+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444444
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.52 E-value=1.1e-06 Score=89.00 Aligned_cols=146 Identities=10% Similarity=-0.077 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhh-HHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGIL-DVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
+...+..++.++.+.|++++|...|++++...|.... +.-. ..........++..++.+|.+.|++++|+..|+++++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~-~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE-AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5678889999999999999999999999998776200 0000 0000001257888999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEA-LELLWEMQG 271 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 271 (729)
..+. +..++..+..+|...|++++|+..|+++.+.. +.+..++..+..++.+.|++++| ...|..|..
T Consensus 225 ~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 LDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8765 78889999999999999999999999999875 56788999999999999999988 456666643
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.49 E-value=8.2e-07 Score=77.22 Aligned_cols=99 Identities=9% Similarity=0.014 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...+..++..+.+.|++++|+..|+++++..+. +...|..+..++.+.|++++|+..|++..+.+ +.+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 4556667888888999999999999999887654 77778888888999999999999999888865 566778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 004814 252 SFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~ 272 (729)
++...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 888999999999998888764
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=4e-06 Score=69.58 Aligned_cols=103 Identities=16% Similarity=0.061 Sum_probs=70.0
Q ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 004814 593 LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE 672 (729)
Q Consensus 593 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 672 (729)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...+++..+.. +.+...+..++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3455666666777777777777777776642 2256666777777777777777777777777653 3456667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 673 NCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 673 ~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+...|++++|.+.+++++ ...|+..
T Consensus 82 ~~~~~~~~~A~~~~~~~~--~~~~~~~ 106 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGL--KHEANNP 106 (118)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTCTTCH
T ss_pred HHHHhhHHHHHHHHHHHH--HcCCCCH
Confidence 777777777777777777 4555443
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.46 E-value=1.4e-06 Score=80.89 Aligned_cols=156 Identities=12% Similarity=-0.069 Sum_probs=84.5
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCC
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF----GI-KPSIVTYNTMLDSFCKEGE 258 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~ 258 (729)
...|++++|.+.++.+.. .+.....++..+...+...|++++|...|++..+. +. +....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356777888775544433 22224556667777777778888777777776551 11 1224456666777777777
Q ss_pred HHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCc-cChhhHHHHHHHHHhCC
Q 004814 259 MQEALELLWEMQGR----GCSP--NGVTYNVLITGFSRNGELEQARGLIRDMLKL----GLK-VSAHSYNPIICGYSEKG 327 (729)
Q Consensus 259 ~~~A~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g 327 (729)
+++|.+.+++..+. +..| ....+..+...+...|++++|...+++..+. +.. ....++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777665432 1111 1234555666666667777776666665532 100 00122344445555555
Q ss_pred CHHHHHHHHHHHH
Q 004814 328 LLVEALNLEEEMV 340 (729)
Q Consensus 328 ~~~~A~~~~~~m~ 340 (729)
++++|.+.+++..
T Consensus 162 ~~~~A~~~~~~al 174 (203)
T 3gw4_A 162 NLLEAQQHWLRAR 174 (203)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.46 E-value=1.1e-06 Score=76.31 Aligned_cols=101 Identities=8% Similarity=-0.082 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...+..++..+.+.|++++|...|++++..+|. +...+..++.+|.+.|++++|+..|+++++
T Consensus 16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 80 (142)
T 2xcb_A 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---------------DARYFLGLGACRQSLGLYEQALQSYSYGAL 80 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---------------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35566777888899999999999999999998886 577888999999999999999999999999
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
..+. +...+..+..++...|++++|...|+...+..
T Consensus 81 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 81 MDIN-EPRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8765 77788889999999999999999999988753
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=1.3e-06 Score=74.19 Aligned_cols=103 Identities=13% Similarity=0.048 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHH
Q 004814 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG--ILPN----KYTYT 667 (729)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~ 667 (729)
..+..++..+.+.|++++|+..|+++++.. +-+...|..++.+|.+.|++++|++.+++.++.+ ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 345566777777777777777777777642 2246667777777777777777777777776531 1111 13566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 668 ILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
.++.++...|++++|++.|++.+. ..||..
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~ 117 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPE 117 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHH
Confidence 677777778888888888888773 345543
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.45 E-value=0.00013 Score=72.14 Aligned_cols=188 Identities=9% Similarity=0.016 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 004814 504 TSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLG--SLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGD-LRRGRDL 580 (729)
Q Consensus 504 ~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 580 (729)
+++++.+++.++... |.+..+|+.-...+.+.+ .+++++.+++++++..+. +..+|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456666666666543 556666666666666666 367777777777766533 66666666666666666 4677777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----
Q 004814 581 FNNMLRKGLSPTLVTYTVLIHAHAAR--------------GRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL----- 641 (729)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~----- 641 (729)
++++++.. +.|...|+.....+... +.++++++.+.+++...+ -|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccc
Confidence 77777664 45666666666555544 346778888887777532 2566666555555554
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHH---HHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 642 ------RRIDQAYGLFIDMEEEGILPNK-YTYTILIN---ENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 642 ------g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~---~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+.++++++.++++.+. .||. -++.+++. +....|..+++...+.+++ .+.|...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~Dp~r~ 309 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLK--AVDPMRA 309 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH--HHCGGGH
T ss_pred cchHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHH--HhCcchh
Confidence 4578888888888885 4543 23333322 2224677888888888888 6777544
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.45 E-value=4.6e-06 Score=69.15 Aligned_cols=94 Identities=10% Similarity=-0.104 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKE 256 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (729)
..++..+...|++++|...|+++.+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..++.+.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33444444444444444444444443322 33444444444444455555555554444432 22344444455555555
Q ss_pred CCHHHHHHHHHHHHhC
Q 004814 257 GEMQEALELLWEMQGR 272 (729)
Q Consensus 257 g~~~~A~~~~~~m~~~ 272 (729)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 5555555555554443
No 157
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.41 E-value=4.6e-07 Score=84.03 Aligned_cols=128 Identities=9% Similarity=-0.117 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTL----------------VTYTVLIHAHAARGRLELAFMYFSEMQVKG 623 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 623 (729)
.+..+...+...|++++|...|++.++.. +.+. ..|..+..+|...|++++|+..++++.+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 45555556666666666666666666542 1121 556666666777777777777777776642
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 004814 624 IRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEAL-RLYKEML 690 (729)
Q Consensus 624 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~ 690 (729)
+.+...+..++.+|...|++++|...|++..+.. +.+...+..+..++...|+.+++. ..++.+.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2355666667777777777777777777776642 334556666666666666666655 4444444
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.41 E-value=2.7e-06 Score=72.16 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCC--CCC----hhhHHHH
Q 004814 176 LDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGI--KPS----IVTYNTM 249 (729)
Q Consensus 176 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 249 (729)
+..|+..|.+.|++++|+..|+++++..+. +...|+.+..+|.+.|++++|++.|++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 334444555555555555555555554332 444455555555555555555555555443210 000 1245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 004814 250 LDSFCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~ 271 (729)
..++...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 5666666666666666666554
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.40 E-value=8.7e-07 Score=82.17 Aligned_cols=124 Identities=12% Similarity=0.000 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC---------------hHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD---------------VKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
...+..++..|.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34555667777788888888888888877543211 145556666666666666666666666654
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQAR 298 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 298 (729)
. +.+..++..+..++...|++++|.+.|++..+.. +.+...+..+...+...++.+++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3 4455566666666666666666666666665541 224445555555555444444443
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=5.4e-06 Score=72.18 Aligned_cols=112 Identities=10% Similarity=-0.039 Sum_probs=76.9
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPN----VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 667 (729)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+..+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556667777777777777777777777764 344 4567777777778888888888888777753 34566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHhh
Q 004814 668 ILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSALLLKQ 708 (729)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~ll~~~ 708 (729)
.+..++...|++++|...+++++ .+.|+.......+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCV--SLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH--HHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHH
Confidence 77778888888888888888877 4455544333332433
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.39 E-value=3.3e-06 Score=72.58 Aligned_cols=100 Identities=13% Similarity=-0.110 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...+..++..+...|++++|...+++++..+|. +..++..++.+|...|++++|+..++++++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 71 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---------------VAVYYTNRALCYLKMQQPEQALADCRRALE 71 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677777777777777777777777777776654 355666777777777777777777777776
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
..+. +...+..+..++...|++++|...|++..+.
T Consensus 72 ~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 72 LDGQ-SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCch-hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6543 5566666777777777777777777766553
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.39 E-value=6.9e-06 Score=69.46 Aligned_cols=98 Identities=15% Similarity=0.004 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDS 252 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 252 (729)
...+..++..|.+.|++++|+..|++.++..+. +...|..+..++.+.|++++|+..|++.++.. +.+..+|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 445667778888889999999999988887654 67778888888888888888888888888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 004814 253 FCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~ 272 (729)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888887764
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.39 E-value=3.1e-06 Score=75.57 Aligned_cols=99 Identities=11% Similarity=-0.111 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..+..++.+.|++++|...|++++..+|. +..++..++.+|.+.|++++|+..|+++++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 74 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---------------NPIYLSNRAAAYSASGQHEKAAEDAELATVV 74 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4455666666666666666666666666666554 3455666666666666666666666666665
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
.+. +...|..+..++...|++++|...|++.++.
T Consensus 75 ~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 75 DPK-YSKAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 443 4555666666666666666666666666554
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.38 E-value=1.9e-06 Score=77.08 Aligned_cols=97 Identities=14% Similarity=0.023 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 004814 558 HITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALING 637 (729)
Q Consensus 558 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 637 (729)
...+..+...+.+.|++++|.+.|++.++.. +.+...|..+..+|...|++++|+..++++++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3345555555555555555555555555543 3345555555555555555555555555555532 1134455555555
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004814 638 LCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~ 656 (729)
|...|++++|...|++.++
T Consensus 89 ~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 5555555555555555554
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.35 E-value=4.2e-06 Score=71.93 Aligned_cols=98 Identities=9% Similarity=-0.018 Sum_probs=63.9
Q ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 591 PTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 591 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
.+...+..+...+...|++++|...|++..+.. +.+...+..++.++...|++++|...+++..+.+ +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566666666666777777777776666642 2245566666667777777777777777766653 33555666677
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~ 690 (729)
.++...|++++|+..|++++
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 77777777777777777766
No 166
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=4.7e-06 Score=69.93 Aligned_cols=100 Identities=14% Similarity=-0.021 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENC 674 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 674 (729)
.+..+...+.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..+++.++.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45566777888888888888888888753 2267778888888888888888888888888864 446677888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 675 NAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 675 ~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
..|++++|+..+++++ ...|+.
T Consensus 97 ~~g~~~~A~~~~~~al--~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWL--LSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHH--C-----
T ss_pred HcCCHHHHHHHHHHHH--HhCcCC
Confidence 8888888888888888 566653
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.33 E-value=4e-06 Score=71.09 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 004814 594 VTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGI--LPN----KYTYT 667 (729)
Q Consensus 594 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~~~~ 667 (729)
..+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345555556666666666666666665542 22455566666666666666666666666655320 111 44566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 668 ILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 668 ~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.++.++...|++++|.+.++++++
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 666666667777777777776663
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=5e-06 Score=68.24 Aligned_cols=97 Identities=12% Similarity=-0.038 Sum_probs=66.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILP--NKYTYTIL 669 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l 669 (729)
+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|...+++..+.. +. +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 44556666677777777777777777776652 2355666777777777777777777777777653 33 46667777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHH
Q 004814 670 INENCNA-GNWQEALRLYKEML 690 (729)
Q Consensus 670 ~~~~~~~-g~~~~A~~~~~~m~ 690 (729)
..++.+. |++++|.+.+++++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHHHhCCHHHHHHHHHHHh
Confidence 7777777 77777777777776
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.30 E-value=4.2e-06 Score=70.23 Aligned_cols=95 Identities=11% Similarity=-0.090 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP 206 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (729)
+..++..+.+.|++++|...++++++.+|. +...+..++.+|.+.|++++|+..|+++++..+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~- 83 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE---------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK- 83 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 334555666667777777777776666655 3555666666666666666666666666665543
Q ss_pred ChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 207 DVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 207 ~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
+...+..+..++...|++++|+..|++.++.
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 84 DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555566666666666666666666666543
No 170
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=1.4e-05 Score=69.49 Aligned_cols=103 Identities=12% Similarity=-0.098 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+...+..++..+...|++++|...++++++..|.. .....++..++.+|...|++++|+..++++++
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 466777777777778888888888887777765541 00145666677777777777777777777776
Q ss_pred CCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 202 NGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 202 ~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
..+. +...+..+..++...|++++|...|++..+.
T Consensus 94 ~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 94 KDGG-DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HTSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hCcc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 5433 4556666666677777777777777766654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=6.6e-06 Score=69.72 Aligned_cols=108 Identities=16% Similarity=0.086 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC-------hhh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS-------IVT 245 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~-------~~~ 245 (729)
...+..++..|...|++++|...|+++.+..+. +...+..+...+...|++++|...|+++.+.. +.+ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 445667788888888888888888888876543 66677778888888888888888888877643 122 566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 004814 246 YNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVL 284 (729)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 284 (729)
+..+...+.+.|++++|.+.|++..+. .|+......+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 777777777788888888888777764 3454444433
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=6.8e-06 Score=67.40 Aligned_cols=96 Identities=13% Similarity=-0.047 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKP--SIVTYNTMLDS 252 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~ 252 (729)
.+..++..|.+.|++++|...|+++.+..+. +...+..+..++...|++++|.+.|++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 4445666677777777777777777765543 45566666666677777777777777666653 33 45566666666
Q ss_pred HHhc-CCHHHHHHHHHHHHhC
Q 004814 253 FCKE-GEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~-g~~~~A~~~~~~m~~~ 272 (729)
+.+. |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 6666 6666666666666654
No 173
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=5.7e-05 Score=79.48 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=17.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC
Q 004814 460 VNGSCKMGNLSMAREFFNEMLRKG 483 (729)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~g 483 (729)
...+.+.|++++|++.|.++.+..
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~ 34 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKD 34 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC
Confidence 445667788888888888777753
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=1.1e-05 Score=71.80 Aligned_cols=79 Identities=11% Similarity=0.006 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC-THSALLL 706 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~-~~~~ll~ 706 (729)
...|..+..+|.+.|++++|+..++++++.+ +.+...|..++.+|...|++++|+..|++++ .+.|+.. .....+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al--~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL--RNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH--hcCCCCHHHHHHHHH
Confidence 3567777778888888888888888887764 4456677888888888888888888888887 5566654 4343333
Q ss_pred hhh
Q 004814 707 KQL 709 (729)
Q Consensus 707 ~~l 709 (729)
.+.
T Consensus 140 ~~~ 142 (162)
T 3rkv_A 140 IVT 142 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.17 E-value=2.1e-05 Score=83.22 Aligned_cols=143 Identities=12% Similarity=-0.052 Sum_probs=97.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhh--hHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGI--LDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKML 200 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 200 (729)
....|..+...+.+.|++++|...|++++...|... .+.... ........+|..++.+|.+.|++++|+..|++++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~--~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK--ASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHH--HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 356788899999999999999999999999876520 000000 0000114567777888888888888888888888
Q ss_pred HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH-HHHHH
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALE-LLWEM 269 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~m 269 (729)
+..+. +..+|..+..+|...|++++|+..|+++++.. +.+..++..+..++.+.++.++|.+ .+..|
T Consensus 345 ~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 345 GLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76654 66777777778888888888888888877764 4456677777777777777766653 34444
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.16 E-value=2.6e-05 Score=79.79 Aligned_cols=137 Identities=11% Similarity=-0.120 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHH-HhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDV-LIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
..+..+...+.+.|++++|...++++++..+...... .............++..++.+|.+.|++++|+..++++++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 4578889999999999999999999987432210000 000000001245667777778888888888888888887765
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
+. +..++..+..+|...|++++|+..|++..+.. +.+...+..+...+.+.++.+++.
T Consensus 304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 43 56667777777777777777777777777654 345566666666666666655554
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.15 E-value=1.9e-05 Score=70.24 Aligned_cols=111 Identities=11% Similarity=-0.092 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCC-------CcchHHHHHHHHHHHHcCCCHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLS-------SCVSIKILDLLLLIYTKKSMVEQCLLV 195 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 195 (729)
....+...+..+.+.|++++|...|.+++..-+.... ..... .+....++..++.+|.+.|++++|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLIL----REKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH----TSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcc----cCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3466788899999999999999999999886221000 00000 112456788888888899999999999
Q ss_pred HHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 196 FNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
++++++..+. +..+|..+..++...|++++|...|++..+..
T Consensus 86 ~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 86 SSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 9988887654 67778888888888888888888888888764
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=3.6e-05 Score=65.09 Aligned_cols=96 Identities=10% Similarity=0.038 Sum_probs=48.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-
Q 004814 129 TILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPD- 207 (729)
Q Consensus 129 ~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~- 207 (729)
.++..+...|++++|...+++++...|.. ......+..++.+|.+.|++++|+..|+++++..+...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 74 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNG------------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK 74 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSS------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCC------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc
Confidence 34445555566666666665555544431 01123444555555555555555555555555433210
Q ss_pred -hHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 208 -VKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 208 -~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
..++..+..++.+.|++++|...|+.+.+
T Consensus 75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33344455555555555555555555544
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.15 E-value=6.9e-06 Score=68.43 Aligned_cols=86 Identities=12% Similarity=-0.113 Sum_probs=62.1
Q ss_pred hcCChhhHHHHHHHHHhc---cchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHH
Q 004814 136 ESGLLRSAYWVVETVVCV---NMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCN 212 (729)
Q Consensus 136 ~~g~~~~A~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (729)
..|++++|...++++++. +|. +..++..++.+|.+.|++++|+..|+++++..+. +...+.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~ 65 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRV 65 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 357788888888888877 343 4667777888888888888888888888877654 566677
Q ss_pred HHHHHHHHCCChhHHHHHHHHHHhC
Q 004814 213 RIIKVLRDNGFSVKAREVYRMMGEF 237 (729)
Q Consensus 213 ~ll~~l~~~g~~~~A~~~~~~~~~~ 237 (729)
.+..++.+.|++++|+..|++..+.
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777888888888888888877664
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.15 E-value=2.5e-05 Score=82.64 Aligned_cols=151 Identities=13% Similarity=0.036 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------hhhHHHHHHH
Q 004814 538 SLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPT---------------LVTYTVLIHA 602 (729)
Q Consensus 538 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~ 602 (729)
++++|...++...+.. .-....+..+...+.+.|++++|...|+++++.. +.+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444333321 1135578888889999999999999999998763 223 4788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A 682 (729)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++.. +.+...+..+..++.+.|++++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988863 2367788888889999999999999999988853 34556788888888888888877
Q ss_pred H-HHHHHHHHC
Q 004814 683 L-RLYKEMLDR 692 (729)
Q Consensus 683 ~-~~~~~m~~~ 692 (729)
. ..+++|..+
T Consensus 405 ~~~~~~~~f~k 415 (457)
T 1kt0_A 405 DRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHhh
Confidence 6 456666643
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.13 E-value=1.5e-06 Score=92.56 Aligned_cols=86 Identities=13% Similarity=-0.043 Sum_probs=38.8
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEAL 263 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (729)
.+.|++++|++.|+++++..+. +..++..+..++.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444444443322 33444444444444444444444444444432 233444444444444444444444
Q ss_pred HHHHHHHh
Q 004814 264 ELLWEMQG 271 (729)
Q Consensus 264 ~~~~~m~~ 271 (729)
+.|++..+
T Consensus 95 ~~~~~al~ 102 (477)
T 1wao_1 95 RDYETVVK 102 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.7e-05 Score=70.02 Aligned_cols=132 Identities=16% Similarity=0.122 Sum_probs=82.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRKGL-SPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVK----GIRP-NVI 629 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~ 629 (729)
++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...++++.+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555556666666666666665554310 011 135666677777777777777777776542 1000 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEEE----GILP-NKYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
.+..+...+...|++++|...+++..+. +.++ ...++..+...+...|++++|.+.+++.++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5667777788888888888888877652 1111 123567778888888888888888888763
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=5.4e-06 Score=88.25 Aligned_cols=119 Identities=8% Similarity=-0.014 Sum_probs=78.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRID 645 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 645 (729)
..+.+.|++++|.+.++++++.. +.+..+|..+..+|.+.|++++|++.++++.+.. +.+...+..++.+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34556677777777777777663 4456777777777777777777777777777753 225667777777777778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 004814 646 QAYGLFIDMEEEGILPNKYTYTILINE--NCNAGNWQEALRLYK 687 (729)
Q Consensus 646 ~A~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~ 687 (729)
+|.+.++++.+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888877777753 3334455555544 667777888887777
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.11 E-value=6.9e-05 Score=63.29 Aligned_cols=94 Identities=13% Similarity=-0.067 Sum_probs=70.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh---HhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC---hhhHHHHH
Q 004814 177 DLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV---KNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS---IVTYNTML 250 (729)
Q Consensus 177 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li 250 (729)
..++..+.+.|++++|...|+++.+..+. +. ..+..+..++.+.|++++|...|+++.+.. +.+ ..++..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 34566778888888888888888876543 33 466677788888888888888888887754 333 55677778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 004814 251 DSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
.++.+.|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888887765
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.10 E-value=7.1e-05 Score=81.06 Aligned_cols=171 Identities=8% Similarity=-0.028 Sum_probs=127.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHc
Q 004814 537 GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGD----------LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAAR 606 (729)
Q Consensus 537 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 606 (729)
...++|++.++++++..+. +..+|+.-..++...|+ ++++++.++.+++.. +.+..+|+.-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3456778888888876533 55667766666666666 888888888888875 56778888888888888
Q ss_pred C--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------
Q 004814 607 G--RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR-RIDQAYGLFIDMEEEGILPNKYTYTILINENCNA------- 676 (729)
Q Consensus 607 g--~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~------- 676 (729)
| ++++++++++++.+...+ |...|+.-...+.+.| .++++++.++++++.. +-|...|.....++.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence 8 668999999998886533 7778888888888888 8888999988888864 55777888777776663
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHhhhccchh
Q 004814 677 -------GNWQEALRLYKEMLDREIEPD-YCTHSALLLKQLDKDYK 714 (729)
Q Consensus 677 -------g~~~~A~~~~~~m~~~~~~pd-~~~~~~ll~~~l~~~g~ 714 (729)
+.+++|++.+++++ .+.|+ ...|..+ ...|.+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai--~~~P~~~saW~y~-~~ll~~~~~ 241 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAF--FTDPNDQSAWFYH-RWLLGRAEP 241 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHH--HHCSSCSHHHHHH-HHHHSCCCC
T ss_pred ccccccHHHHHHHHHHHHHHH--hhCCCCccHHHHH-HHHHhcCCC
Confidence 56899999999998 55664 3445555 667766655
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.10 E-value=3.5e-05 Score=67.94 Aligned_cols=103 Identities=14% Similarity=-0.064 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
..++..+..++...|++++|...+++++...+.. .+......++..++..|...|++++|...+++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---------GDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3466777777888888888888888877654321 0000123456667777777777777777777766421
Q ss_pred CC-CC----hHhHHHHHHHHHHCCChhHHHHHHHHHH
Q 004814 204 LL-PD----VKNCNRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 204 ~~-~~----~~~~~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
.. .+ ...+..+..++...|++++|...+++..
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 10 01 2234445555555566666655555544
No 187
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=0.00016 Score=76.03 Aligned_cols=166 Identities=11% Similarity=-0.063 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 004814 456 YTIMVNGSCKMGNLSMAREFFNEMLRKGLQ-PDRF----AYTTQIAGELKLGDTSEAYRLQEEMLAK----GFPP-DLIT 525 (729)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~----~~~~li~~~~~~g~~~~A~~l~~~~~~~----~~~~-~~~~ 525 (729)
+..++..|.+.|++++|.+.+.++.+.-.. ++.. ..+.+...+...|+.++|..+++..... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 344555555666666666655554432100 1111 1111222233455666666666554331 1111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hh
Q 004814 526 YNVLVHGLCKLGSLEEANELLRKMVGDG----FIP-DHITYTSIIHASLEMGDLRRGRDLFNNMLRK----GLSPT--LV 594 (729)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~ 594 (729)
+..+...+...|++++|..+++++...- ..+ ...++..++..|...|++++|..++++.... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 5666777777777777777776655321 111 1345666677777777777777777766542 11111 23
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
.+..++..+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455555666667777777777666643
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.08 E-value=1.4e-05 Score=69.15 Aligned_cols=95 Identities=13% Similarity=0.009 Sum_probs=66.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVKGIRP------N-----VITYNALINGLCRLRRIDQAYGLFIDMEEE-----GI 659 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~ 659 (729)
+......+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344455555666666666666665531110 1 237888888888888888888888888874 11
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 660 LPN-KYTY----TILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 660 ~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.|+ ...| .....++...|++++|+..|++++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 454 4477 888899999999999999999998
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.04 E-value=0.00019 Score=77.72 Aligned_cols=174 Identities=10% Similarity=-0.021 Sum_probs=133.3
Q ss_pred hcCCh-hhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCC
Q 004814 136 ESGLL-RSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSM----------VEQCLLVFNKMLRNGL 204 (729)
Q Consensus 136 ~~g~~-~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~ 204 (729)
+.|.+ ++|+..+++++..+|. +..+|+.-..++.+.|+ ++++++.++++++..+
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~---------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPD---------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HcCCCCHHHHHHHHHHHHHCch---------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC
Confidence 34444 6789999999999887 35556655555555566 8999999999999887
Q ss_pred CCChHhHHHHHHHHHHCC--ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHH
Q 004814 205 LPDVKNCNRIIKVLRDNG--FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEG-EMQEALELLWEMQGRGCSPNGVTY 281 (729)
Q Consensus 205 ~~~~~~~~~ll~~l~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~ 281 (729)
+ +..+|+.-..++.+.+ +++++++.++++.+.. +-|..+|+.-..++.+.| .++++++.++++.+.. +-|..+|
T Consensus 105 K-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW 181 (567)
T 1dce_A 105 K-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSW 181 (567)
T ss_dssp T-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHH
T ss_pred C-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHH
Confidence 6 8888999999999999 6699999999999977 668889999888888888 8999999999998874 3477888
Q ss_pred HHHHHHHHhC--------------CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC
Q 004814 282 NVLITGFSRN--------------GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL 328 (729)
Q Consensus 282 ~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 328 (729)
+.....+.+. +.++++.+.+++++... +-+..+|+-+...+.+.++
T Consensus 182 ~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 182 HYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 8877776653 34566677776666654 3356666666655555554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.04 E-value=4.3e-06 Score=69.70 Aligned_cols=84 Identities=13% Similarity=0.144 Sum_probs=43.5
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 004814 606 RGRLELAFMYFSEMQVKGI--RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
.|++++|+..|+++++.+. +.+...+..++.+|...|++++|+..++++++.. +.+...+..++.++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 3455555555555555320 1123345555555666666666666666665542 334455555566666666666666
Q ss_pred HHHHHHH
Q 004814 684 RLYKEML 690 (729)
Q Consensus 684 ~~~~~m~ 690 (729)
..+++++
T Consensus 82 ~~~~~al 88 (117)
T 3k9i_A 82 ELLLKII 88 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.02 E-value=5.5e-05 Score=77.37 Aligned_cols=91 Identities=13% Similarity=-0.005 Sum_probs=55.8
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
+..+|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34556666666666777777777777666642 1245566666666777777777777777666642 334555556666
Q ss_pred HHHhcCCHHHHHH
Q 004814 672 ENCNAGNWQEALR 684 (729)
Q Consensus 672 ~~~~~g~~~~A~~ 684 (729)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
No 192
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.00 E-value=2e-05 Score=79.76 Aligned_cols=149 Identities=9% Similarity=-0.063 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 004814 124 EFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNG 203 (729)
Q Consensus 124 ~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 203 (729)
...+..+...+.+.|++++|...|++++...+... .+...|+.+++...+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----------------------~~~~~~~~~~~~~~l~------ 229 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----------------------MFQLYGKYQDMALAVK------ 229 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----------------------HHTCCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----------------------hhhhcccHHHHHHHHH------
Confidence 45577788889999999999999999998876521 0112222333322211
Q ss_pred CCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 004814 204 LLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNV 283 (729)
Q Consensus 204 ~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 283 (729)
...|+.+..+|.+.|++++|+..|++.++.. +.+..+|..+..+|...|++++|...|++..+.. +.+...+..
T Consensus 230 ----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~ 303 (338)
T 2if4_A 230 ----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRE 303 (338)
T ss_dssp ----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 1244555666666666666666666665543 3455566666666666666666666666665431 112333333
Q ss_pred HHHH-HHhCCCHHHHHHHHHHHHhC
Q 004814 284 LITG-FSRNGELEQARGLIRDMLKL 307 (729)
Q Consensus 284 li~~-~~~~g~~~~A~~~~~~m~~~ 307 (729)
+... ....+..+++.+.|..|...
T Consensus 304 L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 304 LRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3333 22334555666666666544
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.98 E-value=1.5e-05 Score=80.75 Aligned_cols=153 Identities=13% Similarity=0.002 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 004814 523 LITYNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHA 602 (729)
Q Consensus 523 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 602 (729)
...+..+...+.+.|++++|...|++.++. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 455666667777777777777777777664 233221 122233333332221 1367778888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHH
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINE-NCNAGNWQE 681 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~ 681 (729)
|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...|+++.+.. +.+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888753 2367788888888888888888888888887642 2234455555544 334567778
Q ss_pred HHHHHHHHHHCCCCCCH
Q 004814 682 ALRLYKEMLDREIEPDY 698 (729)
Q Consensus 682 A~~~~~~m~~~~~~pd~ 698 (729)
+...|++|+ +..|+.
T Consensus 318 a~~~~~~~l--~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIF--KGKDEG 332 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHhh--CCCCCC
Confidence 888888887 555543
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.98 E-value=0.00021 Score=61.33 Aligned_cols=110 Identities=11% Similarity=0.025 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAY 648 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~ 648 (729)
++++|.+.|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566666666666655 22222 5555555566666666666666653 55566666666665 56667777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 004814 649 GLFIDMEEEGILPNKYTYTILINENCN----AGNWQEALRLYKEMLDRE 693 (729)
Q Consensus 649 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 693 (729)
+.|++..+.| +...+..|...|.. .+++++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7777666654 45556666666666 666777777777766543
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.92 E-value=9.3e-05 Score=64.03 Aligned_cols=96 Identities=6% Similarity=-0.150 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCC------Ch-----HhHHHHHHHHHHCCChhHHHHHHHHHHhC-----
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLP------DV-----KNCNRIIKVLRDNGFSVKAREVYRMMGEF----- 237 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~ll~~l~~~g~~~~A~~~~~~~~~~----- 237 (729)
..+...+..+.+.|++++|+..|+++++..+.. +. ..|+.+..++.+.|++++|+..|++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345566777888999999999999999865431 11 25666666666666666666666666553
Q ss_pred --CCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 238 --GIKPSIVTY----NTMLDSFCKEGEMQEALELLWEMQ 270 (729)
Q Consensus 238 --~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~ 270 (729)
. +.+...| .....++...|++++|+..|++..
T Consensus 92 e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 92 ELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2233344 444455555555555555554443
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.92 E-value=1.7e-05 Score=64.95 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDY------CT 700 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~------~~ 700 (729)
+...+..++..+...|++++|+..|++.++.. +.+...|..+..++.+.|++++|++.+++++ .+.|+. ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGL--RYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HhCCCccHHHHHHH
Confidence 34456666677777777777777777777653 4456667777777777777777777777777 555553 22
Q ss_pred HHHHHHhhhccchhhc-HHHHHHHh
Q 004814 701 HSALLLKQLDKDYKVH-AVEYLESL 724 (729)
Q Consensus 701 ~~~ll~~~l~~~g~~~-a~~~l~~l 724 (729)
....++.++...|+.+ |.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 2222255555555554 54444443
No 197
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.76 E-value=8.9e-05 Score=78.27 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCC-CC
Q 004814 595 TYTVLIHAHAARGRLELAFMYFSEMQVK-----GI-RPN-VITYNALINGLCRLRRIDQAYGLFIDMEE-----EGI-LP 661 (729)
Q Consensus 595 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~-~p 661 (729)
+++.|+.+|...|++++|..+++++++- |. .|+ ..+++.|+..|..+|++++|..+++++.+ .|- .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 4455555555555555555555554321 11 111 22455555666666666666666655543 120 01
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 662 N-KYTYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 662 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
+ ..+...+..++...|++++|...|+++.+
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11233444555566666666666666653
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.75 E-value=0.00084 Score=57.45 Aligned_cols=111 Identities=13% Similarity=-0.068 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHH----cCCHHHH
Q 004814 537 GSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAA----RGRLELA 612 (729)
Q Consensus 537 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 612 (729)
+++++|.+.|++..+.| .++.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35667777777777766 23333 5555666666777777777777654 56666777777776 6777788
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 004814 613 FMYFSEMQVKGIRPNVITYNALINGLCR----LRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 613 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g 658 (729)
.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88887777764 56667777777777 677888888888777765
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.74 E-value=5.4e-05 Score=65.33 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 004814 645 DQAYGLFIDMEEEGILPNKYTYTILINENCNA-----------GNWQEALRLYKEMLDREIEPDYCTHSA 703 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~~~~pd~~~~~~ 703 (729)
++|+..|++.++.+ +.+..+|..+..+|... |++++|++.|++++ .+.|+...|..
T Consensus 63 ~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl--~l~P~~~~y~~ 129 (158)
T 1zu2_A 63 QEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV--DEQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH--HHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH--HhCCCCHHHHH
Confidence 35555555555532 22344555555555544 35666666666666 45555444433
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.72 E-value=0.00029 Score=54.93 Aligned_cols=83 Identities=14% Similarity=0.054 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 004814 172 SIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLD 251 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 251 (729)
+...+..++..|.+.|++++|+..|++.++..+. +...+..+..++.+.|++++|...|++..+.. +.+..++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4556667777788888888888888888776543 55666677777777777777777777776653 345555665555
Q ss_pred HHHhc
Q 004814 252 SFCKE 256 (729)
Q Consensus 252 ~~~~~ 256 (729)
++.+.
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.71 E-value=3.6e-05 Score=63.00 Aligned_cols=94 Identities=7% Similarity=-0.041 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC------hhhH
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS------IVTY 246 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~------~~~~ 246 (729)
...+..++..|.+.|++++|+..|+++++..+. +...+..+..++.+.|++++|+..|++.++.. +.+ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 456777888888999999999999998887654 67778888888888899999998888888764 223 4455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 004814 247 NTMLDSFCKEGEMQEALELLWE 268 (729)
Q Consensus 247 ~~li~~~~~~g~~~~A~~~~~~ 268 (729)
..+..++...|++++|...+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 5566666666665555544433
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00061 Score=71.89 Aligned_cols=131 Identities=7% Similarity=-0.065 Sum_probs=81.8
Q ss_pred HHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCC-CC
Q 004814 134 LIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR-----NGLL-PD 207 (729)
Q Consensus 134 l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~ 207 (729)
+...|++++|..++++++..... .-+.+......+++.|+.+|...|++++|..+++++++ .|.. |+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~-------~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 391 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEP-------VFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQ 391 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTT-------TBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 55789999999999998875322 01122233567888999999999999999999888764 2322 22
Q ss_pred h-HhHHHHHHHHHHCCChhHHHHHHHHHHh-----CCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 004814 208 V-KNCNRIIKVLRDNGFSVKAREVYRMMGE-----FGI--KPSIVTYNTMLDSFCKEGEMQEALELLWEMQG 271 (729)
Q Consensus 208 ~-~~~~~ll~~l~~~g~~~~A~~~~~~~~~-----~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (729)
+ .+++.|...|..+|++++|..+|++..+ .|. +....+.+.+..++...|.+++|..+|.++++
T Consensus 392 ~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 392 LGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3366677777777777777777766543 121 11122334444555555555666555555543
No 203
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=0.00028 Score=58.20 Aligned_cols=63 Identities=14% Similarity=0.044 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHh
Q 004814 173 IKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGE 236 (729)
Q Consensus 173 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~ 236 (729)
...+..++.+|...|++++|+..|+++++..+. +...+..+..++...|++++|...|++..+
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444555555555555555555555555554332 344444455555555555555555554443
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.61 E-value=0.00036 Score=54.37 Aligned_cols=83 Identities=8% Similarity=0.030 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
+...+..+..++...|++++|...+++++..+|. +..++..++.+|.+.|++++|+..|+++.+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---------------NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---------------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4677888999999999999999999999988765 4667888999999999999999999999987
Q ss_pred CCCCChHhHHHHHHHHHHC
Q 004814 203 GLLPDVKNCNRIIKVLRDN 221 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~ 221 (729)
.+. +...+..+..++.+.
T Consensus 73 ~p~-~~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 73 DPN-NAEAKQNLGNAKQKQ 90 (91)
T ss_dssp CTT-CHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHhc
Confidence 654 566677777666554
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.58 E-value=0.00019 Score=59.18 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=43.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 612 AFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 612 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
|+..|+++.+.. +.+...+..++..|...|++++|+..+++.++.. +.+...|..+..++...|++++|...|++++
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555432 1244555556666666666666666666665542 3344455566666666666666666666655
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.52 E-value=0.00019 Score=61.98 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=76.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCCh----------hHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 004814 184 TKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFS----------VKAREVYRMMGEFGIKPSIVTYNTMLDSF 253 (729)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 253 (729)
.+.+.+++|++.+++.++..+. +...|+.+..++.+.+++ ++|+..|++.++.. +.+..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 3556789999999999998876 888899888899888765 48999999988875 55677888888888
Q ss_pred HhcC-----------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 004814 254 CKEG-----------EMQEALELLWEMQGRGCSPNGVTYNVLI 285 (729)
Q Consensus 254 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~li 285 (729)
...| ++++|++.|++..+. .|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 8764 788888888888775 56655554333
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.42 E-value=0.00041 Score=55.50 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 627 NVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 627 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+...+..++.+|...|++++|+..|+++++.+ +.+...|..+..+|...|++++|++.|++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555566666666666666655543 3334455555566666666666666666555
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.34 E-value=0.00062 Score=54.41 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=45.8
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
.+..++..++.++...|++++|...|+++++.+|. +..+|..++.+|.+.|++++|+..|++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD---------------YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45667777777777777777777777777776665 344666677777777777777777777665
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.26 E-value=0.0031 Score=62.56 Aligned_cols=76 Identities=16% Similarity=0.072 Sum_probs=62.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 625 RPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~~~~l 704 (729)
+.++.+|..+...+...|++++|...++++++.+ |+...|..+...+.-.|++++|.+.|++++ .+.|...++..+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Al--rL~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAF--NLRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCcChHHHH
Confidence 4577788888777777899999999999999864 787788888888999999999999999998 678887776555
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.96 E-value=0.0051 Score=48.06 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=46.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 626 PNVITYNALINGLCRLRR---IDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 626 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
.|+..+..+..++...++ .++|..++++.++.+ +.+......++..+.+.|++++|+..|++++ ...|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l--~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLL--DSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--TCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCC
Confidence 456666666666654444 577777777777754 4455667777777777777777777777777 34444
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.94 E-value=0.0092 Score=59.20 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=60.9
Q ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 004814 590 SPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYT 667 (729)
Q Consensus 590 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 667 (729)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|+.++|.+.++++... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5677788888777777899999999999998864 78778888888899999999999999988884 57766654
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0061 Score=63.13 Aligned_cols=61 Identities=8% Similarity=-0.103 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 630 TYNALINGLCRLRRIDQAYGLFIDMEE-----EG-ILPNK-YTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 630 ~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
+++.|+.+|...|++++|..+++++++ .| -.|+. .+++.|+..|..+|++++|+.++++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 344555555555555555555555443 11 01111 245555555555666666665555554
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.79 E-value=0.0024 Score=50.55 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=41.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCCChH-hHHHHHHHHHHCCChhHHHHHHHHHHhCC
Q 004814 179 LLLIYTKKSMVEQCLLVFNKMLRNGLLPDVK-NCNRIIKVLRDNGFSVKAREVYRMMGEFG 238 (729)
Q Consensus 179 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~l~~~g~~~~A~~~~~~~~~~~ 238 (729)
.+..|.+.|++++|+..|+++++..+. +.. .+..+..++...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 345566777788888888877776543 455 66677777777777777777777777654
No 214
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.78 E-value=0.29 Score=46.50 Aligned_cols=83 Identities=12% Similarity=0.068 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhC-----CCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhC-CCHH
Q 004814 260 QEALELLWEMQGRGCSPN---GVTYNVLITGFSRN-----GELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEK-GLLV 330 (729)
Q Consensus 260 ~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~ 330 (729)
..|...+++..+. .|+ ...|..+...|.+. |+.++|++.|++.++.+..-+..++......++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444445554443 333 33455555555552 55555555555555543222344444455555542 5555
Q ss_pred HHHHHHHHHHHCCC
Q 004814 331 EALNLEEEMVTRGV 344 (729)
Q Consensus 331 ~A~~~~~~m~~~g~ 344 (729)
+|.+.+++.+...+
T Consensus 258 ~a~~~L~kAL~a~p 271 (301)
T 3u64_A 258 GFDEALDRALAIDP 271 (301)
T ss_dssp HHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHcCCC
Confidence 55555555555433
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.77 E-value=0.0083 Score=46.82 Aligned_cols=70 Identities=7% Similarity=-0.083 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004814 121 KRDEFVFCTILEILIESGL---LRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFN 197 (729)
Q Consensus 121 ~~~~~~~~~l~~~l~~~g~---~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 197 (729)
+.|+..+..+..++...+. .++|..+++++++.+|. +++....++..+.+.|++++|+..|+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---------------~~rA~~~lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---------------NEAALSLIANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3566777777777764443 57788888888877776 46666677777777777777777777
Q ss_pred HHHHCCCC
Q 004814 198 KMLRNGLL 205 (729)
Q Consensus 198 ~~~~~~~~ 205 (729)
++++..+.
T Consensus 68 ~~l~~~p~ 75 (93)
T 3bee_A 68 LLLDSNDP 75 (93)
T ss_dssp HHHTCCCT
T ss_pred HHHhhCCC
Confidence 77776543
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.0057 Score=63.44 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=27.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC---CCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 565 IHASLEMGDLRRGRDLFNNMLRKG---LSPT----LVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 565 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
+..+.+.|++++|.+++++.++.. +.|+ ..+++.++.+|...|++++|+.++++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344455566666666666655431 1111 2344445555555555555555555443
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.62 E-value=0.23 Score=47.17 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHh-cC
Q 004814 609 LELAFMYFSEMQVKGIRPN---VITYNALINGLCRL-----RRIDQAYGLFIDMEEEGILP--NKYTYTILINENCN-AG 677 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~-~g 677 (729)
..+|...++++++. .|+ ...|..++..|.+. |+.++|.+.|++.++. .| +..++....+.++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 57788888888884 566 55788888888884 9999999999999995 45 36788888888888 49
Q ss_pred CHHHHHHHHHHHHHCCCC--CCHH
Q 004814 678 NWQEALRLYKEMLDREIE--PDYC 699 (729)
Q Consensus 678 ~~~~A~~~~~~m~~~~~~--pd~~ 699 (729)
+.++|.+.+++.+..... |+..
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CHHHHHHHHHHHHcCCCCCCCChh
Confidence 999999999999966555 5543
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.62 E-value=0.012 Score=50.15 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004814 609 LELAFMYFSEMQVKGIRPNVITYNALINGLCRLR---RIDQAYGLFIDMEEEGILP--NKYTYTILINENCNAGNWQEAL 683 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 683 (729)
...+.+.|.+..+.|. ++..+...+.+++++.+ ++++++.++++..+.+ .| +...+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455566666666554 57777777788888877 5668888888887764 24 3445666777778888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHH
Q 004814 684 RLYKEMLDREIEPDYCTHSAL 704 (729)
Q Consensus 684 ~~~~~m~~~~~~pd~~~~~~l 704 (729)
+.++.++ .++|+..-...+
T Consensus 92 ~y~~~lL--~ieP~n~QA~~L 110 (152)
T 1pc2_A 92 KYVRGLL--QTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHH--HHCTTCHHHHHH
T ss_pred HHHHHHH--hcCCCCHHHHHH
Confidence 8888888 667765443333
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.61 E-value=0.0037 Score=64.76 Aligned_cols=85 Identities=9% Similarity=-0.088 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHHHH
Q 004814 572 GDLRRGRDLFNNMLRK---GLSPT----LVTYTVLIHAHAARGRLELAFMYFSEMQVK-----GI-RPN-VITYNALING 637 (729)
Q Consensus 572 g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----g~-~p~-~~~~~~l~~~ 637 (729)
|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|+.+++++++- |. .|+ ..+++.|+..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554432 11111 345666666677777777777666666532 21 122 3356777777
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 004814 638 LCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 638 ~~~~g~~~~A~~~~~~m~~ 656 (729)
|..+|++++|..+++++.+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777777777654
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.56 E-value=0.0067 Score=47.88 Aligned_cols=58 Identities=17% Similarity=0.126 Sum_probs=34.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVKGIRPNVI-TYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.+..+...|++++|+..++++.+.. +.+.. .+..++.+|...|++++|...|++.++.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445556666666666666666542 12444 5666666666666666666666666664
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.46 E-value=6e-07 Score=89.98 Aligned_cols=268 Identities=12% Similarity=0.089 Sum_probs=169.0
Q ss_pred cchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 170 CVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 170 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
+..+.+|..|+.++.+.|++.+|++.|-+.. |+..|..++.+..+.|.+++-++++....+. ..++..=+.|
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteL 122 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETEL 122 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHH
Confidence 4457788899999999999999987764332 5556778899999999999998888777654 3345556788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCH
Q 004814 250 LDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLL 329 (729)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 329 (729)
+-+|++.++..+-.+++ ..||..-...+..-|...|.++.|.-+|..+. -|..|...+.+.|++
T Consensus 123 i~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~y 186 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGG
T ss_pred HHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHH
Confidence 88999988876543332 24677667778888888998888877775432 244455556666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 330 VEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNIGEAFLLFDEL 409 (729)
Q Consensus 330 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 409 (729)
..|.+.-++ ..++.||..+-.+|...+++.-|.-.--.++-. ..-...++..|-..|.+++-+.+++.-
T Consensus 187 q~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 187 QAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp GSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred HHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 666554322 236677777777888777776665443333321 111223455677777777777777765
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CCHHHHHHHHHHHHhcCCHHHHHH
Q 004814 410 RSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMINQ-GIL------PDVITYTIMVNGSCKMGNLSMARE 474 (729)
Q Consensus 410 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 474 (729)
.... ......|+-|.-.|++-. +++..+.++....+ +++ -....|.-++-.|++..++|.|..
T Consensus 256 lglE-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 256 LGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTST-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred hCCC-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 5321 335566666666666543 34444433322111 211 123445666666666666665543
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.45 E-value=0.011 Score=61.43 Aligned_cols=86 Identities=9% Similarity=0.041 Sum_probs=39.8
Q ss_pred HcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC-CCCCH-HHHHHHH
Q 004814 605 ARGRLELAFMYFSEMQVK---GIRPN----VITYNALINGLCRLRRIDQAYGLFIDMEE-----EG-ILPNK-YTYTILI 670 (729)
Q Consensus 605 ~~g~~~~A~~~~~~~~~~---g~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g-~~p~~-~~~~~l~ 670 (729)
.+|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++ .| ..|+. .+++.|.
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 445555555555555432 01111 22445555555555555555555555443 11 01111 2344555
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~~m~ 690 (729)
..|..+|++++|+.++++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 55555555555555555554
No 223
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.43 E-value=0.21 Score=56.85 Aligned_cols=103 Identities=16% Similarity=0.059 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHc
Q 004814 317 NPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRS 396 (729)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 396 (729)
..++..+.+.|..++|+++.+... .-.......|++++|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 555566666666666665542111 1123344567777776654322 4556677777777777
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 397 GNIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQQLKENMIN 446 (729)
Q Consensus 397 g~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 446 (729)
|+++.|.+.|.++.. |..+...+...|+.+...++-+....
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777666533 22344444445555554444444443
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.32 E-value=0.2 Score=57.06 Aligned_cols=25 Identities=4% Similarity=-0.122 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHH
Q 004814 314 HSYNPIICGYSEKGLLVEALNLEEE 338 (729)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~ 338 (729)
..|..+...+.+.|+++.|.+.|..
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444443
No 225
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.95 E-value=2.9 Score=46.92 Aligned_cols=256 Identities=13% Similarity=0.030 Sum_probs=115.4
Q ss_pred HHHHcCCHHHHHHHHHHHhhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHH
Q 004814 392 GYCRSGNIGEAFLLFDELRSRNLVPTVV--TYNTLIDGLCRYGDLEVAQQLKENMINQGI-------LPDVITYTIMVNG 462 (729)
Q Consensus 392 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~ 462 (729)
+....|+.++++.+++.....+-..+.. .-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3455666667766666544321011222 222223334444544456665555544311 0111222233333
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHhh--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH--HHHHh
Q 004814 463 SCKMGN-LSMAREFFNEMLRKGLQPDRFA--YT--TQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLV--HGLCK 535 (729)
Q Consensus 463 ~~~~g~-~~~A~~~~~~~~~~g~~~~~~~--~~--~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li--~~~~~ 535 (729)
+.-.|. -+++.+.+..++... +... .. ++...+...|+.+....++..+.+.. +......++ -++..
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 332332 134455555555431 2111 11 22233445666666666666655431 222222233 33335
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 004814 536 LGSLEEANELLRKMVGDGFIPDHIT--YTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAF 613 (729)
Q Consensus 536 ~g~~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 613 (729)
.|+.+.+..+.+.+.... .|.... -..+.-+|+..|+.....++++.+.+.. ..+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence 667666666666665531 122111 1123344566677666666777666542 222222233333444456666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 004814 614 MYFSEMQVKGIRPNVITYNALINGLCRLRRI-DQAYGLFIDMEE 656 (729)
Q Consensus 614 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 656 (729)
++++.+.+.+ .|....-..+.-+....|+. .+|+..+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 6666555542 33333333333344434433 566677777654
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.85 E-value=0.091 Score=41.83 Aligned_cols=76 Identities=13% Similarity=0.074 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 122 RDEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 122 ~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
-+..-+..|+..+.+.|++..|...++.+++..+.. .........++..|+.+|.+.|++++|+..++++++
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~--------~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEG--------EISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhcc--------CCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 467778899999999999999999999998764221 001123578889999999999999999999999998
Q ss_pred CCCC
Q 004814 202 NGLL 205 (729)
Q Consensus 202 ~~~~ 205 (729)
..+.
T Consensus 75 l~P~ 78 (104)
T 2v5f_A 75 LDPE 78 (104)
T ss_dssp HCTT
T ss_pred cCCC
Confidence 6544
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.77 E-value=0.041 Score=43.94 Aligned_cols=59 Identities=14% Similarity=-0.014 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEG------ILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
..++..+...|+++.|...++++.+.- -.+...++..+..++.+.|++++|+.++++++
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 344444444444444444444443310 01123344445555555555555555555554
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.69 E-value=0.65 Score=37.97 Aligned_cols=63 Identities=21% Similarity=0.210 Sum_probs=36.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 526 YNVLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGL 589 (729)
Q Consensus 526 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 589 (729)
....++.+...|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 334455555666666666666664432 245566666666666666666666666666666653
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.68 E-value=0.067 Score=45.49 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 004814 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG---RLELAFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQAY 648 (729)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~ 648 (729)
+..+.+-|.+....+ +++..+...+..++++.+ +.++++.++++..+.. .| +...+..+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344455555555544 356666666666666666 4556777777666643 13 2344555556667777777777
Q ss_pred HHHHHHHHc
Q 004814 649 GLFIDMEEE 657 (729)
Q Consensus 649 ~~~~~m~~~ 657 (729)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777777763
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.47 E-value=0.33 Score=42.38 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=54.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHH
Q 004814 533 LCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELA 612 (729)
Q Consensus 533 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 612 (729)
..+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566666666665543 2556666666666666666666666655432 23333445555665555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 613 FMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFI 652 (729)
Q Consensus 613 ~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 652 (729)
.++-+.....| + ++.....+...|+++++++++.
T Consensus 80 ~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHH
Confidence 55544444433 1 2344444555666666666663
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.27 E-value=1 Score=36.90 Aligned_cols=139 Identities=13% Similarity=0.022 Sum_probs=86.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 004814 535 KLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFM 614 (729)
Q Consensus 535 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 614 (729)
-.|..++..++..+..+.. +..-||-++--....-+-+-..++++.+-+. -|. ..+|+......
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence 3456666666666655531 3333444443333344444444444443322 111 13444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 004814 615 YFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREI 694 (729)
Q Consensus 615 ~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 694 (729)
.+-.+- -+....+..++.+..+|+-|+-.+++.++... .+|++.....+..+|.+-|+..+|.++++++-++|+
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 444332 24455677778888999999988888886543 478888899999999999999999999999988887
Q ss_pred C
Q 004814 695 E 695 (729)
Q Consensus 695 ~ 695 (729)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.14 E-value=0.093 Score=42.87 Aligned_cols=90 Identities=19% Similarity=0.141 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004814 608 RLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQ---AYGLFIDMEEEGILP--NKYTYTILINENCNAGNWQEA 682 (729)
Q Consensus 608 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 682 (729)
....+.+-|.+....|. ++..+--.+.+++.+..+..+ ++.++++....+ .| .......|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34455555555555443 667777777778888776655 777777777653 23 233455666778888888888
Q ss_pred HHHHHHHHHCCCCCCHHHH
Q 004814 683 LRLYKEMLDREIEPDYCTH 701 (729)
Q Consensus 683 ~~~~~~m~~~~~~pd~~~~ 701 (729)
++.++.++ .+.|+..-.
T Consensus 94 ~~~~~~lL--~~eP~n~QA 110 (126)
T 1nzn_A 94 LKYVRGLL--QTEPQNNQA 110 (126)
T ss_dssp HHHHHHHH--HHCTTCHHH
T ss_pred HHHHHHHH--HhCCCCHHH
Confidence 88888888 566755433
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.81 E-value=1.9 Score=37.64 Aligned_cols=23 Identities=13% Similarity=0.063 Sum_probs=9.0
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHH
Q 004814 315 SYNPIICGYSEKGLLVEALNLEE 337 (729)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~ 337 (729)
.|..|.......|+++-|.+.|.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHH
Confidence 33333333333333333333333
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.58 E-value=0.27 Score=41.22 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH-HHHHHHH------HHHhcCCHHHHHHHHHHHHH
Q 004814 520 PPDLITYNVLVHGLCKLGSL------EEANELLRKMVGDGFIPDHI-TYTSIIH------ASLEMGDLRRGRDLFNNMLR 586 (729)
Q Consensus 520 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~~~~~~~~p~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 586 (729)
+.|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+. .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44666666666666666666 6666777766654 233311 1111111 11233566677777776655
Q ss_pred CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004814 587 KGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 587 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 626 (729)
.+ +.=..+|.....--.++|+...|.+++.+.+..+.+|
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 42 2225555555555556677777777777766665443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.26 E-value=0.73 Score=38.61 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=36.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 641 LRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEP 696 (729)
Q Consensus 641 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 696 (729)
.++.++|.++|+.++..+ +-=...|.....--.++|+...|.+++.+++..+.+|
T Consensus 73 i~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 367777777777776532 1115566666666677888888888888888444443
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.31 E-value=13 Score=41.83 Aligned_cols=259 Identities=12% Similarity=0.042 Sum_probs=132.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHhhHHHHHHH
Q 004814 427 GLCRYGDLEVAQQLKENMINQG--ILPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGL-------QPDRFAYTTQIAG 497 (729)
Q Consensus 427 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-------~~~~~~~~~li~~ 497 (729)
+....|+.+++..+++..+..+ -.+....-..+.-+....|..+++..++...+...- .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4566777777877776655421 112233334444445556665667777766655311 0111112223333
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 498 ELKLGD-TSEAYRLQEEMLAKGFPPDLITYN--VLVHGLCKLGSLEEANELLRKMVGDGFIPDHITYTSIIHASLEMGDL 574 (729)
Q Consensus 498 ~~~~g~-~~~A~~l~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 574 (729)
+.-.|. -+++.+.+..++...- +...... ++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 333332 2455666666655421 1111122 23333445677777777777666542 11222223333444567888
Q ss_pred HHHHHHHHHHHHCCCCCChhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 575 RRGRDLFNNMLRKGLSPTLVTY--TVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFI 652 (729)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 652 (729)
+.+..+.+.+.... .|....- .++.-+|+..|+.....+++..+.+. ...+......+.-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 88888888777642 2222211 23445566778877777788887764 12223233333344555676666667776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHH
Q 004814 653 DMEEEGILPNKYTYTILINENCNAGNW-QEALRLYKEML 690 (729)
Q Consensus 653 ~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~ 690 (729)
.+.+.+ .|....-..+.-+....|+. .+|+..+..+.
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 665543 33333333333344444443 67777888776
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.03 E-value=1.3 Score=36.36 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 004814 623 GIRPNVITYNALINGLCRLRRI---DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYC 699 (729)
Q Consensus 623 g~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~ 699 (729)
+-.|+..+--.+.+++.+..+. .+++.+++++.+.+..-....+..|.-++.+.|++++|++..+.++ .+.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL--~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--TTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH--hhCCCCH
Confidence 4457777777788888888765 4688888888876511234466777888999999999999999999 7888765
Q ss_pred HHHHH
Q 004814 700 THSAL 704 (729)
Q Consensus 700 ~~~~l 704 (729)
-...+
T Consensus 113 QA~~L 117 (134)
T 3o48_A 113 QVGAL 117 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.94 E-value=1.9 Score=35.76 Aligned_cols=74 Identities=14% Similarity=0.121 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 004814 625 RPNVITYNALINGLCRLRRI---DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEMLDREIEPDYCT 700 (729)
Q Consensus 625 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~~~ 700 (729)
.|+..+--.+.+++.+..+. .+++.+++++...+..-.......|.-++.+.|++++|+++.+.++ .+.|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL--~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF--EHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--HTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH--hcCCCcHH
Confidence 56777777777888877754 4677788888775421233455566778888888888888888888 66776543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.66 E-value=0.56 Score=38.26 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 004814 573 DLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLEL---AFMYFSEMQVKGIRP--NVITYNALINGLCRLRRIDQA 647 (729)
Q Consensus 573 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~g~~p--~~~~~~~l~~~~~~~g~~~~A 647 (729)
.+..+.+-+.+....| .++..+-..+..++.+...... ++.++++..+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3445555555555444 3566666666667776665544 677777766653 12 233445566677778888888
Q ss_pred HHHHHHHHHc
Q 004814 648 YGLFIDMEEE 657 (729)
Q Consensus 648 ~~~~~~m~~~ 657 (729)
.++++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777774
No 240
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.61 E-value=0.00079 Score=67.97 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=160.3
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRN 202 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 202 (729)
.+..|..++.+..+.++..+|+..|-++ . ++..|..++....+.|.+++-+..+.-.++.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~------------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~ 112 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--D------------------DPSSYMEVVQAANTSGNWEELVKYLQMARKK 112 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC--S------------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC--C------------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 4567889999999999888886544221 1 2223555677777888888888887766655
Q ss_pred CCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------
Q 004814 203 GLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRG--------- 273 (729)
Q Consensus 203 ~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------- 273 (729)
.- ++..=+.|+-+|++.++..+-.++.. .||..-...+++-|...|.++.|.-+|..+....
T Consensus 113 ~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L 183 (624)
T 3lvg_A 113 AR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHL 183 (624)
T ss_dssp CC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSC
T ss_pred hc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHH
Confidence 33 33344678889999888766443322 4777777788888888888888877766543210
Q ss_pred -----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 004814 274 -----------CSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTR 342 (729)
Q Consensus 274 -----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (729)
-.-+..||-.+-.+|...+.+.-|.-.--.++-. +.-...++..|-..|.+++-+.+++.....
T Consensus 184 ~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 184 GEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp SGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 0235667888888888888877665544443321 222335667788889999888888877642
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC------CCHhHHHHHHHHHHHcCCHHHHHH
Q 004814 343 GVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRK-NVI------PDIISYNTLLYGYCRSGNIGEAFL 404 (729)
Q Consensus 343 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~A~~ 404 (729)
-......|+-|.-.|++- +.++-.+.++....+ +++ -....|.-++-.|++-.+++.|..
T Consensus 259 -ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 -ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp -TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred -CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 234677788888888765 344444444332222 221 134568888888888888887654
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.28 E-value=9.6 Score=39.29 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--hhh
Q 004814 527 NVLVHGLCKLGSLEEANELLRKMVGD--GFIPD---HITYTSIIHASLEMGDLRRGRDLFNNMLR----KGLSPT--LVT 595 (729)
Q Consensus 527 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~~ 595 (729)
..|...+...|++.+|..++..+... +.... ...+...+..|...+++.+|..++.++.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45667777778888888887776532 21111 23556667778888888888888877642 221222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVK-GIRPNVITYN----ALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
+...+..+...+++.+|.+.|.++.+. ....|...+. .++.+..-.+...+--.+.........-++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566677777888888888887777542 0111222221 11111112222222223333333222234566788888
Q ss_pred HHHHhc--CCHHHHHHHHHHHH
Q 004814 671 NENCNA--GNWQEALRLYKEML 690 (729)
Q Consensus 671 ~~~~~~--g~~~~A~~~~~~m~ 690 (729)
.+|... .+|+.+.+.|+..+
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhchHhhhHHHHHHHHHHh
Confidence 887653 46777777766554
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.17 E-value=0.49 Score=40.54 Aligned_cols=58 Identities=12% Similarity=-0.003 Sum_probs=34.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 599 LIHAHAARGRLELAFMYFSEMQVK-GIRPN-------VITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 599 l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
-+..+...|.++.|+-+.+.+... +..|+ ..++..+++++...|++..|...|++.++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 345566677777777666664432 11223 12445566677777777777777777643
No 243
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=89.76 E-value=15 Score=35.45 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 004814 451 PDVITYTIMVNGSCKMGNLSMAREFFN 477 (729)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (729)
-++.....+...|.+.|++.+|...|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 367777888888888888888777663
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.20 E-value=22 Score=36.57 Aligned_cols=189 Identities=8% Similarity=0.052 Sum_probs=101.0
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcC
Q 004814 467 GNLSMAREFFNEMLRK-----GLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGL----CKLG 537 (729)
Q Consensus 467 g~~~~A~~~~~~~~~~-----g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~----~~~g 537 (729)
|+++.|++.+..+.+. +..........++..+...|+++...+.+..+.+.. ..-......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCC
Confidence 6788888877666542 223345567777788888888888877776655442 11122223333322 2222
Q ss_pred CHHHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---hhhHHHHHHHHH
Q 004814 538 SLEEAN--ELLRKMVG--DG-FIP---DHITYTSIIHASLEMGDLRRGRDLFNNMLRK--GLSPT---LVTYTVLIHAHA 604 (729)
Q Consensus 538 ~~~~A~--~~~~~~~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~ 604 (729)
..+... .+.+.... .| +.. .......|...+...|++.+|.+++..+... |..+. ...+...+..|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 222211 11111100 01 111 1123345666677777777777777776543 21111 235555666677
Q ss_pred HcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 605 ARGRLELAFMYFSEMQV----KGIRPN--VITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 605 ~~g~~~~A~~~~~~~~~----~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
..+++..|..++.++.. ....|+ ...+...+..+...+++.+|.+.|.++.+
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777776542 111222 22455666666677777777776666654
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.16 E-value=2.4 Score=43.02 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHH
Q 004814 632 NALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML-----DREIEPDYCT 700 (729)
Q Consensus 632 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~pd~~~ 700 (729)
..++..+...|+.++|+..+..+.... +-+...|..++.++.+.|+..+|++.|+++. +.|+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 345556666677777776666666543 4455666677777777777777766666653 2366666554
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=88.83 E-value=3.9 Score=44.98 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=34.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 004814 636 NGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEM 689 (729)
Q Consensus 636 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 689 (729)
+.|...|+++-|+++.++.+.. .+-+..+|..|..+|...|+|+.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3445566777777777777664 2444557777777777777777777666665
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.50 E-value=7.9 Score=45.58 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=98.7
Q ss_pred CChHHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhc-cchh-------hhHHHhhcCCCCcchH
Q 004814 102 EKPRIALRFFRWVETQPGVKRDEFVFCTILEILIESGLLRSAYWVVETVVCV-NMHG-------ILDVLIGGGLSSCVSI 173 (729)
Q Consensus 102 ~~~~~al~~f~~~~~~~~~~~~~~~~~~l~~~l~~~g~~~~A~~~~~~~~~~-~~~~-------~~~~l~~~~~~~~~~~ 173 (729)
+.++.|..+..|+. .+..+.-.++.++...|++++|...|+++-.. ..+. -+..+.........-.
T Consensus 826 ~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 899 (1139)
T 4fhn_B 826 KQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLS 899 (1139)
T ss_dssp SCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSH
T ss_pred hhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHH
Confidence 56778888888875 35555568899999999999999999876421 1110 0111111111111234
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCh----HhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 004814 174 KILDLLLLIYTKKSMVEQCLLVFNKMLRNGLLPDV----KNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTM 249 (729)
Q Consensus 174 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 249 (729)
..|..++..|-+.|.++.++++...+++....-+. ..|..+.+.+.+.|++++|...+-.+..... -......+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 56777888888888888888888877764322222 1466778888888888888888877765432 24456667
Q ss_pred HHHHHhcCCHHH
Q 004814 250 LDSFCKEGEMQE 261 (729)
Q Consensus 250 i~~~~~~g~~~~ 261 (729)
+..+|..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777776666544
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.96 E-value=2 Score=47.30 Aligned_cols=132 Identities=12% Similarity=0.065 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCCChHhHHHHHHHHHHCCC-hhHHHHHHHHHHhC------CCCC-C
Q 004814 172 SIKILDLLLLIYTKKSM-VEQCLLVFNKMLRNGLLPDVKNCNRIIKVLRDNGF-SVKAREVYRMMGEF------GIKP-S 242 (729)
Q Consensus 172 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~~l~~~g~-~~~A~~~~~~~~~~------~~~~-~ 242 (729)
+-.+-+.|+..+...|+ ++.|+.+|+++.+..+.-+......++..+.+.+. --+|.++..+.++. ..++ +
T Consensus 247 ~N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 247 NNYLMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp SSHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred cHHHHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 33455666666666666 58899999999886533222222223333333322 22455555444321 1111 1
Q ss_pred h----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 004814 243 I----------VTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDM 304 (729)
Q Consensus 243 ~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 304 (729)
. ...+.-.+.+...|+++-|+++-++.... .+-+-.+|..|...|...|+++.|+-.+..+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 11222234455677888888887777765 2334567888888888888888887776665
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.25 E-value=9.4 Score=44.96 Aligned_cols=145 Identities=9% Similarity=0.084 Sum_probs=82.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----C---------------
Q 004814 248 TMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKL----G--------------- 308 (729)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--------------- 308 (729)
.++..+.+.+.++-|.++..-. +.+...--.+...|...|++++|.+.|++.... +
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3444555556665555443222 123333334455666666666666666554210 0
Q ss_pred ---CccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 004814 309 ---LKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTL----ATYNILIYGLCKWGRVSDARHRFFEMLRKNVIP 381 (729)
Q Consensus 309 ---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 381 (729)
...-..-|..++..+.+.|.++.+.++-+...+.....+. ..|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0001123667777888888888888777666653221121 2467778888888888888888877766443
Q ss_pred CHhHHHHHHHHHHHcCCH
Q 004814 382 DIISYNTLLYGYCRSGNI 399 (729)
Q Consensus 382 ~~~~~~~li~~~~~~g~~ 399 (729)
-......|+..+|..|..
T Consensus 970 r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhCCCh
Confidence 244556666666665543
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.07 E-value=3.9 Score=35.04 Aligned_cols=127 Identities=9% Similarity=0.041 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-C
Q 004814 127 FCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFNKMLRNGL-L 205 (729)
Q Consensus 127 ~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~ 205 (729)
+-.-+..+...|.|+.|+.+...++...... ........-..++..+++++...|.+..|...|+++++..- -
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~------~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNN------PELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS------TTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCC------cccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3334555788899999888777655542110 00001112355778899999999999999999999865321 0
Q ss_pred C-ChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 206 P-DVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 206 ~-~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+ ...+...+.. ...... ......+...--.+..+|.+.+++++|+.+++.+..+
T Consensus 97 ~k~~s~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 97 SKTSKVRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred hcCCCccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 1 1111111100 000000 0011234445555778888899999999988887544
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.29 E-value=25 Score=33.93 Aligned_cols=80 Identities=13% Similarity=-0.039 Sum_probs=43.5
Q ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 004814 592 TLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRL---RRIDQAYGLFIDMEEEGILPNKYTYTI 668 (729)
Q Consensus 592 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ 668 (729)
++.....+...|.+.|++.+|...|-.- -.-+...+..++.-+... |...++--++- .+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~--------------Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAEFFS--------------RL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH--------------HH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHHHHH--------------HH
Confidence 6677778888888888888877765411 111234444444333333 33333222111 11
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 669 LINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 669 l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
++ -|...|+...|..+++...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 22 2456778888887777664
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.28 E-value=2.8 Score=42.49 Aligned_cols=53 Identities=15% Similarity=0.044 Sum_probs=22.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 004814 566 HASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEM 619 (729)
Q Consensus 566 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 619 (729)
..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|++.|++.
T Consensus 179 ~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 179 EAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444443332 333444444444444444444444444443
No 253
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.23 E-value=6.9 Score=32.05 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 556 PDHITYTSIIHASLEMGD---LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 556 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
|+..+--.+..++.+..+ ..+++.+++++.+.+.......+-.|.-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444444444444432 234455555544433101133333444445555555555555555544
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.93 E-value=30 Score=33.65 Aligned_cols=133 Identities=11% Similarity=-0.013 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHhccchhhhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHH----HHHH
Q 004814 125 FVFCTILEILIESGLLRSAYWVVETVVCVNMHGILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVF----NKML 200 (729)
Q Consensus 125 ~~~~~l~~~l~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~ 200 (729)
+.|-++..-|.+.+++++|..++-.... .+.+.|....|.++. +-..
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA~-----------------------------~ll~~~Q~~sg~DL~~llvevy~ 86 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVSQ-----------------------------TLLRSGQGGSGGDLAVLLVDTFR 86 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------------HHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH-----------------------------HHHHCCCcchHHHHHHHHHHHHH
Confidence 4566777778999999999887654322 122223333322222 2223
Q ss_pred HCCCCCChHhHHHHHHHHHHCCCh--------hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 201 RNGLLPDVKNCNRIIKVLRDNGFS--------VKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 201 ~~~~~~~~~~~~~ll~~l~~~g~~--------~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (729)
+.+..+|......++..+.....- ++|+++=.+.- ....-++.....+...|.+.+++.+|...|- .
T Consensus 87 ~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l-- 161 (336)
T 3lpz_A 87 QAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L-- 161 (336)
T ss_dssp HHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--
Confidence 344445555555555554443321 12222222211 1123456677778888888888888887772 2
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 004814 273 GCSPNGVTYNVLITGFSRN 291 (729)
Q Consensus 273 ~~~p~~~~~~~li~~~~~~ 291 (729)
|..+....+..++.-+...
T Consensus 162 g~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 162 GTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp SCTTHHHHHHHHHHHHHHT
T ss_pred cCCchHHHHHHHHHHHHHh
Confidence 3333335554444444333
No 255
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.75 E-value=30 Score=33.59 Aligned_cols=82 Identities=12% Similarity=0.066 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 004814 450 LPDVITYTIMVNGSCKMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELKLGDTSEAYRLQEEMLAKGFPPDLITYNVL 529 (729)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~l 529 (729)
.-|+.....+...|.+.+++.+|...|- . |-.+....+..++.-+.+.+...+ .+...-.++
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV 194 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV 194 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence 3467777778888888888888877762 1 223333455444433333222111 122222233
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 004814 530 VHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 530 i~~~~~~g~~~~A~~~~~~~~ 550 (729)
+ .|...++...|..+++...
T Consensus 195 L-~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 195 L-PYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H-HHHHTTCHHHHHHHHHHHH
T ss_pred H-HHHHhCCHHHHHHHHHHHH
Confidence 3 3445677777777665554
No 256
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.26 E-value=8.2 Score=29.71 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 610 ELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 610 ~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
-+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+++++-...+ ..+...+|..++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 344444555555555566666666666666666666666666655543 222233444443
No 257
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.59 E-value=46 Score=33.34 Aligned_cols=166 Identities=11% Similarity=-0.043 Sum_probs=85.0
Q ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHHhhC-CCCC---CHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 004814 383 IISYNTLLYGYCRSGNIGEAFLLFDELRSR-NLVP---TVVTYNTLIDGLCRY-GDLEVAQQLKENMINQGILPDVITY- 456 (729)
Q Consensus 383 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-~~~~---~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~- 456 (729)
......|...|.+.|+.++..+++...... +..+ .......+++.+... +..+.-.++..+.++.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 456677888899999999888888776432 1111 123345566666543 33344444444443311 0011122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHH
Q 004814 457 -----TIMVNGSCKMGNLSMAREFFNEMLRKGLQPDR-----FAYTTQIAGELKLGDTSEAYRLQEEMLAK--GFPPDLI 524 (729)
Q Consensus 457 -----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~ 524 (729)
..++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...++..++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25666777777777777777776653111121 12333345566666666666666655332 1212222
Q ss_pred HHH----HHHHHHH-hcCCHHHHHHHHHHH
Q 004814 525 TYN----VLVHGLC-KLGSLEEANELLRKM 549 (729)
Q Consensus 525 ~~~----~li~~~~-~~g~~~~A~~~~~~~ 549 (729)
... .-...+. ..+++..|...|-+.
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 211 1122333 456666666655544
No 258
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=80.58 E-value=12 Score=33.24 Aligned_cols=53 Identities=21% Similarity=0.092 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004814 609 LELAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEEGILP 661 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (729)
..++..+|..|..+|+.-. +..|......+...|++++|.++|+.-++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4455555555555444332 3344445555555555555555555555544343
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.61 E-value=15 Score=28.34 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 004814 575 RRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 621 (729)
-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++++-...
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34444445555445555555555555555555555555555555544
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=77.10 E-value=14 Score=28.22 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=41.3
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004814 223 FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIR 302 (729)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (729)
..++|..+-+.+...+. ...+-.+-+..+...|+|++|..+.+.+ +.||.+.|.+|-. .+.|.-+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 34555555555555431 2222222334455667777777665443 3567666665543 24566666666665
Q ss_pred HHHhCC
Q 004814 303 DMLKLG 308 (729)
Q Consensus 303 ~m~~~~ 308 (729)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555544
No 261
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.76 E-value=23 Score=28.89 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 004814 611 LAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILIN 671 (729)
Q Consensus 611 ~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 671 (729)
+..+-++.+....+.|++.+..+.+.+|.+.+++.-|+++++-...+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 44555555555666777777777777777777777777777776654 2334445655553
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=76.29 E-value=32 Score=28.53 Aligned_cols=66 Identities=11% Similarity=-0.015 Sum_probs=32.8
Q ss_pred CChhhHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 591 PTLVTYTVLIHAHAARGR---LELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEE 656 (729)
Q Consensus 591 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 656 (729)
|+..+--.+..++.+..+ ..+++.++++....+..-.....-.|.-++.+.|++++|.++.+.+.+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444445554443 234555555555432211233334445556666666666666666665
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.69 E-value=14 Score=28.28 Aligned_cols=78 Identities=14% Similarity=0.039 Sum_probs=44.5
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 004814 223 FSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIR 302 (729)
Q Consensus 223 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 302 (729)
..++|..+-+.+...+. ...+-.+-+..+...|+|++|..+.+.+ +.||.+.|.+|-. .+.|.-+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45566666666555431 2222223334556677777777665443 3677777766543 36676777766666
Q ss_pred HHHhCC
Q 004814 303 DMLKLG 308 (729)
Q Consensus 303 ~m~~~~ 308 (729)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 666555
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=75.08 E-value=13 Score=34.65 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=39.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 567 ASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 567 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
...+.|++++|++....-++.. |.|...-..|+..+|-.|+++.|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3456677777777777766664 566777777777777777777777777777664
No 265
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=74.72 E-value=73 Score=31.89 Aligned_cols=27 Identities=7% Similarity=-0.188 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 419 VTYNTLIDGLCRYGDLEVAQQLKENMI 445 (729)
Q Consensus 419 ~~~~~ll~~~~~~g~~~~A~~~~~~~~ 445 (729)
.....|...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345566677777777777776666553
No 266
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=72.77 E-value=1.1e+02 Score=32.92 Aligned_cols=137 Identities=10% Similarity=0.086 Sum_probs=69.2
Q ss_pred HHHCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 004814 218 LRDNGFSVKAREVYRMMGEFGIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQA 297 (729)
Q Consensus 218 l~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 297 (729)
..+.|++..+..+-..+...-+.| -..|..+...+ .....++...++.+-... +.....-+.-+..+.+.+++...
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~-yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~--p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYP-YLEYRQITDDL-MNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHH-HHHHHHHHHTG-GGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHH-HHHHHHHHhCc-ccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhCCCHHHH
Confidence 445677777766655553321111 11232222211 122455555555443221 11112223344556667777665
Q ss_pred HHHHHHHHhCCCccChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 298 RGLIRDMLKLGLKVSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRV 364 (729)
Q Consensus 298 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 364 (729)
...+.. .+.+...-.....+....|+..+|......+-..|.. .......++..+.+.|.+
T Consensus 92 l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 92 LAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCS
T ss_pred HHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCC
Confidence 554322 2334444455666677778877777776666655532 444556666666666654
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.77 E-value=26 Score=28.62 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 004814 575 RRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 575 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
-+..+-++.+....+.|++.+....+.+|-+.+++..|.++|+-.+.+
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 344444555555555566666666666666666666666666655544
No 268
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.69 E-value=55 Score=33.33 Aligned_cols=61 Identities=7% Similarity=0.032 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 004814 560 TYTSIIHASLEMGDLRRGRDLFNNMLRK--GLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQ 620 (729)
Q Consensus 560 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 620 (729)
+...+...|.+.|++++|.+.+.++... +...-...+-.++..+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4455556666666666666666666543 112223445555555666666666666665554
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.81 E-value=29 Score=29.18 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 645 DQAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+++..+|..|..+|+--.. ..|......+...|++++|.++|+..++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4478888888887765544 35677778888888888888888888888888844
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.67 E-value=24 Score=36.09 Aligned_cols=99 Identities=9% Similarity=-0.041 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHH-
Q 004814 524 ITYNVLVHGLCKLGSLEEANELLRKMVGDG--FIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRK-GLSPTLVTYTVL- 599 (729)
Q Consensus 524 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l- 599 (729)
.+...+...|.+.|++++|.+.+.++.... ...-...+-.++..+...+++..+...++++... .-.++....+.+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 366789999999999999999999998642 2233557888899999999999999999987643 112233222221
Q ss_pred ---HHHHHHcCCHHHHHHHHHHHHHC
Q 004814 600 ---IHAHAARGRLELAFMYFSEMQVK 622 (729)
Q Consensus 600 ---~~~~~~~g~~~~A~~~~~~~~~~ 622 (729)
+-.+...+++.+|.+.|-++...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 22234678899998888777654
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=65.82 E-value=87 Score=29.21 Aligned_cols=55 Identities=25% Similarity=0.327 Sum_probs=41.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 004814 497 GELKLGDTSEAYRLQEEMLAKGFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGD 552 (729)
Q Consensus 497 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 552 (729)
...+.|+.++|+.....-++.. |.|...-..++..+|-.|++++|.+-++...+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 4556777788877777777764 667777777888888888888888888777665
No 272
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.07 E-value=51 Score=29.19 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 004814 571 MGDLRRGRDLFNNMLRKGLSPT-LVTYTVLIHAHAARGRLELAFMYFSEMQVKGIRP 626 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 626 (729)
.+...++.++|..|..+|+... ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446788888888887765443 5567777777788888888888888888877666
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=65.01 E-value=41 Score=28.76 Aligned_cols=54 Identities=17% Similarity=0.264 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 004814 645 DQAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQEALRLYKEMLDREIEPDY 698 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd~ 698 (729)
+++..+|..|...|+--.. ..|......+...|++.+|.++|+..++.+-.|-.
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 3466677777777655443 35667777777788888888888888877777754
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.90 E-value=37 Score=26.04 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=20.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
+...|++++|..+.+.. ..||...|.+| +-.+.|..+++..-+.++..+
T Consensus 50 LmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 50 LMNRGDYASALQQGNKL----AYPDLEPWLAL--CEYRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHTTCHHHHHHHHTTS----CCGGGHHHHHH--HHHHHTCHHHHHHHHHHHTTC
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhC
Confidence 34444555444443332 23444444433 223444444444444444333
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=61.86 E-value=36 Score=26.05 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=22.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 004814 603 HAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEG 658 (729)
Q Consensus 603 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 658 (729)
+...|++++|..+.+.. ..||...|.+| +-.+.|..+++..-+.++..+|
T Consensus 49 LmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHHHHHTCS
T ss_pred HHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHHhCC
Confidence 44455555555443332 23454444444 2244455555544444444443
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=57.27 E-value=2.1e+02 Score=30.70 Aligned_cols=144 Identities=11% Similarity=0.072 Sum_probs=78.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHH
Q 004814 245 TYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYS 324 (729)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 324 (729)
.|..... ..+.|++..+..+...+....+. .-..|..|...+ .....++....+++-. +.+.....-..-+..+.
T Consensus 9 ~~~~a~~-a~~~~~~~~~~~l~~~l~~~pL~-~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 9 RYAQIKQ-AWDNRQMDVVEQMMPGLKDYPLY-PYLEYRQITDDL-MNQPAVTVTNFVRANP--TLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHSGGGTTSTTH-HHHHHHHHHHTG-GGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHhhcCCCcH-HHHHHHHHHhCc-ccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHH
Confidence 3444444 34568888888777666443221 122344333222 1123444444333211 12222233445566677
Q ss_pred hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHHcCCH
Q 004814 325 EKGLLVEALNLEEEMVTRGVAPTLATYNILIYGLCKWGRVSDARHRFFEMLRKNVIPDIISYNTLLYGYCRSGNI 399 (729)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 399 (729)
+.+++...+..+.. .+.+...-.....+....|+.++|......+-..|. .....+..++..+.+.|.+
T Consensus 84 ~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS
T ss_pred hCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC
Confidence 77777776664432 233555555667777788888888877777766554 4455666677777666654
No 277
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=54.13 E-value=1e+02 Score=26.33 Aligned_cols=26 Identities=15% Similarity=0.137 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.|+.++..|.+.|+.+||++.+..--
T Consensus 116 Fy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 116 FESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 34555556666666666666666554
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=52.47 E-value=1e+02 Score=25.92 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004814 612 AFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEEGILP 661 (729)
Q Consensus 612 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (729)
+.++|..|..+|+.-. +..|......+...|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5666666666654433 3345566666666666666666666666655444
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.43 E-value=1.3e+02 Score=29.62 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHH
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR--IDQAYGLFIDMEEEGILPNKYT 665 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~~ 665 (729)
...++.-|...|+.++|.+.++++..-... .......+..++-+.++ .+...+++..+...|+-+....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~ 290 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 290 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 456777788888888888888887532111 13344555555555433 3456677777776665443333
No 280
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.21 E-value=21 Score=32.24 Aligned_cols=53 Identities=21% Similarity=0.178 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 004814 645 DQAYGLFIDMEEEGILPNK-YTYTILINENCNAGNWQEALRLYKEMLDREIEPD 697 (729)
Q Consensus 645 ~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~pd 697 (729)
+++..+|..|...|+--.. ..|......+...|++++|..+|+..++.+-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 4566677777766554443 3556666666777777777777777776666663
No 281
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.44 E-value=80 Score=29.28 Aligned_cols=8 Identities=13% Similarity=-0.267 Sum_probs=3.3
Q ss_pred HHHHCCCh
Q 004814 217 VLRDNGFS 224 (729)
Q Consensus 217 ~l~~~g~~ 224 (729)
..++.|+.
T Consensus 11 ~A~~~g~~ 18 (285)
T 1wdy_A 11 KAVQNEDV 18 (285)
T ss_dssp HHHHTTCH
T ss_pred HHHHcCCH
Confidence 33444443
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=50.28 E-value=90 Score=28.08 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=8.5
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 004814 253 FCKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~ 272 (729)
.++.|+.+....+++.+.+.
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~ 35 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQG 35 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 33444444444444443333
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=49.35 E-value=58 Score=29.32 Aligned_cols=6 Identities=0% Similarity=0.146 Sum_probs=2.3
Q ss_pred HhcCCH
Q 004814 254 CKEGEM 259 (729)
Q Consensus 254 ~~~g~~ 259 (729)
++.|+.
T Consensus 50 ~~~~~~ 55 (240)
T 3eu9_A 50 AINNRI 55 (240)
T ss_dssp HHTTCH
T ss_pred HHhCCH
Confidence 333443
No 284
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.75 E-value=2.2e+02 Score=28.94 Aligned_cols=165 Identities=11% Similarity=0.040 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHh
Q 004814 503 DTSEAYRLQEEMLAK--------GFPPDLITYNVLVHGLCKLGSLEEANELLRKMVGDGFIP----DHITYTSIIHASLE 570 (729)
Q Consensus 503 ~~~~A~~l~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~ 570 (729)
..++...+++..... +...+......++.. ..|+..++..+++.+....... ...+.
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~--------- 234 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKP--------- 234 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCH---------
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCH---------
Confidence 456666666666553 223455555555554 3677777777777765432100 01111
Q ss_pred cCCHHHHHHHHHHHHHCCC---CCChhhHHHHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 004814 571 MGDLRRGRDLFNNMLRKGL---SPTLVTYTVLIHAHA---ARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI 644 (729)
Q Consensus 571 ~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 644 (729)
+.++++..... ..+......+++++. +.++.+.|+..+.+|.+.|..|....-..+..+...-|.-
T Consensus 235 --------e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a 306 (447)
T 3pvs_A 235 --------ELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNA 306 (447)
T ss_dssp --------HHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGG
T ss_pred --------HHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCC
Confidence 11122222110 111222333444443 4678999999999999988777665555556666665642
Q ss_pred -----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 004814 645 -----DQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLY 686 (729)
Q Consensus 645 -----~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 686 (729)
.-|...++.....|.+-........+--++.+-+-..+...+
T Consensus 307 ~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pksn~~~~a~ 353 (447)
T 3pvs_A 307 DPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAF 353 (447)
T ss_dssp CTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 345555666666674333333333333334444433333333
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.45 E-value=99 Score=32.08 Aligned_cols=198 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHH---hccchh--hhHHHhhcCCCCcchHHHHHHHHHHHHcCCCHHHHHHHHH
Q 004814 123 DEFVFCTILEILIESGLLRSAYWVVETVV---CVNMHG--ILDVLIGGGLSSCVSIKILDLLLLIYTKKSMVEQCLLVFN 197 (729)
Q Consensus 123 ~~~~~~~l~~~l~~~g~~~~A~~~~~~~~---~~~~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 197 (729)
+.+.+..++--|...+++++|..+-...+ ...... .+|.+ +.++|.-....|-..|+..+......
T Consensus 135 ~~y~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l---------~ak~~fY~s~~~e~~~~~~~~~~~~~ 205 (523)
T 4b4t_S 135 NCFMHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLI---------NAKLWFYIYLSHETLARSSEEINSDN 205 (523)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHH---------HHHHHHHHHHHHHHhccccccccccc
Q ss_pred HHH---------------HCCCCCChHhHHHHHHHHHHCCChhHHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHh
Q 004814 198 KML---------------RNGLLPDVKNCNRIIKVLRDNGFSVKAREVYRMMGEFGIKPS-------IVTYNTMLDSFCK 255 (729)
Q Consensus 198 ~~~---------------~~~~~~~~~~~~~ll~~l~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~li~~~~~ 255 (729)
... +.+...-...+|.+++.|...+.+++|..+..+..- +.+ ..-+-.++..+.-
T Consensus 206 ~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~f---P~~~~sn~q~~rY~YY~GRI~a~ 282 (523)
T 4b4t_S 206 QNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEY---PHTDVSSSLEARYFFYLSKINAI 282 (523)
T ss_dssp HHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCS---CTTTSCHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcC---CcccCCHHHHHHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCccChhhHHHHHHHHHhCCC
Q 004814 256 EGEMQEALELLWEMQGRGCSPNGV-------TYNVLITGFSRNGELEQARGLIRDMLKLGLKVSAHSYNPIICGYSEKGL 328 (729)
Q Consensus 256 ~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 328 (729)
++++.+|.+.|...... ++++.. .+..++-.-.-.|+..+ ...+.+.+.......|..|..++ +.|+
T Consensus 283 q~~Y~eA~~~L~~A~rk-ap~~~~a~gfr~~a~K~lI~V~LLlG~iP~----r~lf~q~~l~~~L~pY~~Lv~Av-r~Gd 356 (523)
T 4b4t_S 283 QLDYSTANEYIIAAIRK-APHNSKSLGFLQQSNKLHCCIQLLMGDIPE----LSFFHQSNMQKSLLPYYHLTKAV-KLGD 356 (523)
T ss_dssp TTCHHHHHHHHHHHTSS-CSCSSSCSHHHHHHHHHHHHHHHHHTCCCC----HHHHTTTSCHHHHHHHHHHHHHH-HHTC
T ss_pred hccHHHHHHHHHHHHHh-CCcchhhhhHHHHHHHHHHhHHhhcCCCCC----hHHhhchhHHHHHHHHHHHHHHH-HcCC
Q ss_pred HHHHHHHHHH
Q 004814 329 LVEALNLEEE 338 (729)
Q Consensus 329 ~~~A~~~~~~ 338 (729)
+.+-...++.
T Consensus 357 L~~F~~~L~~ 366 (523)
T 4b4t_S 357 LKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
No 286
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.74 E-value=1.4e+02 Score=25.40 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=29.4
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004814 612 AFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEEGILP 661 (729)
Q Consensus 612 A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (729)
+..+|..|..+|+.-. +..|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4556666666655433 3345556666666666666666666666655455
No 287
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.52 E-value=77 Score=31.16 Aligned_cols=27 Identities=7% Similarity=0.098 Sum_probs=21.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 004814 175 ILDLLLLIYTKKSMVEQCLLVFNKMLR 201 (729)
Q Consensus 175 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 201 (729)
....++.-|...|+.++|...++++..
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~ 82 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNL 82 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCC
Confidence 345677788889999999999988653
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.01 E-value=95 Score=27.91 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=13.6
Q ss_pred HHHHHHCCChhHHHHHHHHHHhCCCC
Q 004814 215 IKVLRDNGFSVKAREVYRMMGEFGIK 240 (729)
Q Consensus 215 l~~l~~~g~~~~A~~~~~~~~~~~~~ 240 (729)
+...++.|+.+....+++.+.+.|..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 44445556666555555555544433
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=41.46 E-value=1.4e+02 Score=27.88 Aligned_cols=19 Identities=21% Similarity=-0.169 Sum_probs=8.5
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 004814 355 IYGLCKWGRVSDARHRFFE 373 (729)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~ 373 (729)
+...+..|..+-+.-+++.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHc
Confidence 3344455555444444433
No 290
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=40.74 E-value=85 Score=29.06 Aligned_cols=14 Identities=7% Similarity=0.015 Sum_probs=6.2
Q ss_pred HHHHHhcCCHHHHH
Q 004814 250 LDSFCKEGEMQEAL 263 (729)
Q Consensus 250 i~~~~~~g~~~~A~ 263 (729)
+...++.|+.+...
T Consensus 9 L~~A~~~g~~~~v~ 22 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQ 22 (285)
T ss_dssp HHHHHHTTCHHHHH
T ss_pred HHHHHHcCCHHHHH
Confidence 33444455544333
No 291
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=40.07 E-value=1.5e+02 Score=25.52 Aligned_cols=51 Identities=10% Similarity=0.004 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 004814 574 LRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARGRLELAFMYFSEMQVKGIR 625 (729)
Q Consensus 574 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 625 (729)
.+....+++.+.+.|.-.|...-...+....+.|.+ ....+-.++..+|+.
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 344455555555555544444444444444433322 123344455555553
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.78 E-value=1e+02 Score=27.52 Aligned_cols=46 Identities=15% Similarity=0.100 Sum_probs=21.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhCCCHHHHHHHH
Q 004814 252 SFCKEGEMQEALELLWEMQGRGCSPNGV--TYNVLITGFSRNGELEQARGLI 301 (729)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~ 301 (729)
..++.|+.+....+++ .|..++.. .-.+.+...++.|+.+-+.-++
T Consensus 15 ~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 15 KATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 3456677665554443 33333221 1123445556677765444333
No 293
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=39.60 E-value=2e+02 Score=25.36 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=48.8
Q ss_pred HHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHH
Q 004814 599 LIHAHA---ARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI-----DQAYGLFIDMEEEGILPNKYTYTILI 670 (729)
Q Consensus 599 l~~~~~---~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~~~l~ 670 (729)
+|+++. +..+.+.|+-.+-+|++.| .|....-..++.+....|.- .-|...++.....|.+.-.......+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444443 4567888888888888887 55555555555566555542 34555555556667555444444444
Q ss_pred HHHHhcCCHHHHHHHHH
Q 004814 671 NENCNAGNWQEALRLYK 687 (729)
Q Consensus 671 ~~~~~~g~~~~A~~~~~ 687 (729)
--++.+-+-..+...++
T Consensus 96 iyLA~aPKSNs~y~A~~ 112 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALD 112 (204)
T ss_dssp HHHHHSCCCCHHHHHHH
T ss_pred HHHHcCCccHHHHHHHH
Confidence 44444444333333333
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.43 E-value=1.8e+02 Score=26.57 Aligned_cols=30 Identities=20% Similarity=0.009 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 004814 276 PNGVTYNVLITGFSRNGELEQARGLIRDML 305 (729)
Q Consensus 276 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 305 (729)
++...-...+..+.+.|+-++|.++|-+..
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 344445555667777777777777775554
No 295
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=36.77 E-value=2.9e+02 Score=26.48 Aligned_cols=52 Identities=19% Similarity=0.121 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 004814 258 EMQEALELLWEMQGRGCSPNG--VTYNVLITGFSRNGELEQARGLIRDMLKLGL 309 (729)
Q Consensus 258 ~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 309 (729)
+..+..++-.-+..-..+|.- -+....+....+.+++..|..+-+++++.+.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 344455555555544444432 2455566777788888888888888887764
No 296
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=33.59 E-value=2.9e+02 Score=25.47 Aligned_cols=133 Identities=17% Similarity=0.065 Sum_probs=61.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHH
Q 004814 541 EANELLRKMVGDGFIPDHITYTSIIHASLEMGDLRRGRDLFNNMLRKGLSPTLVTYTVLIHAHAARG-RLELAFMYFSEM 619 (729)
Q Consensus 541 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 619 (729)
.+...+..+.. .++..+-...+.++...|+.+ +...+..+.. .++..+-...+.++...| ....+...+..+
T Consensus 128 ~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~ 200 (280)
T 1oyz_A 128 KIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYDNSDIRDCFVEM 200 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 34444444433 245555455555555555432 3334434433 244444444555555444 234455555555
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 620 QVKGIRPNVITYNALINGLCRLRRIDQAYGLFIDMEEEGILPNKYTYTILINENCNAGNWQEALRLYKEML 690 (729)
Q Consensus 620 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 690 (729)
.+ .++...-...+.++.+.|.. ++...+.++.+. ++ .-...+.++.+.|. +++...+.+++
T Consensus 201 l~---d~~~~vR~~A~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l 261 (280)
T 1oyz_A 201 LQ---DKNEEVRIEAIIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTML 261 (280)
T ss_dssp TT---CSCHHHHHHHHHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHH
T ss_pred hc---CCCHHHHHHHHHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHH
Confidence 43 24555555666666666643 344444444432 22 12233445555555 35555555555
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=32.77 E-value=2.8e+02 Score=25.17 Aligned_cols=22 Identities=18% Similarity=-0.059 Sum_probs=14.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 004814 529 LVHGLCKLGSLEEANELLRKMV 550 (729)
Q Consensus 529 li~~~~~~g~~~~A~~~~~~~~ 550 (729)
-++.+....++++|..++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 4566666777777777776554
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=32.34 E-value=2.3e+02 Score=26.36 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=9.8
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 004814 424 LIDGLCRYGDLEVAQQLKEN 443 (729)
Q Consensus 424 ll~~~~~~g~~~~A~~~~~~ 443 (729)
.+...+..|+.+-+.-+++.
T Consensus 164 ~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 164 CIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHc
Confidence 34444555555555444443
No 299
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=31.99 E-value=1.8e+02 Score=24.92 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 628 VITYNALINGLCRLRRIDQAYGLFIDME 655 (729)
Q Consensus 628 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 655 (729)
...|+.++..|...|+.+||+..+..--
T Consensus 114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 114 EFFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 3456778888889999999999887543
No 300
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=31.77 E-value=2e+02 Score=23.16 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=11.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 004814 562 TSIIHASLEMGDLRRGRDLFNNM 584 (729)
Q Consensus 562 ~~l~~~~~~~g~~~~A~~~~~~~ 584 (729)
..++.-|...|+.++|.+.++++
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL 33 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKEL 33 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 34444455555555555555544
No 301
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.63 E-value=3.4e+02 Score=25.87 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 004814 528 VLVHGLCKLGSLEEANELLRKM 549 (729)
Q Consensus 528 ~li~~~~~~g~~~~A~~~~~~~ 549 (729)
.++.-|...|+.++|.+.++++
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL 192 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKEL 192 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHc
Confidence 3444444455555555555544
No 302
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.63 E-value=1.4e+02 Score=28.55 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 004814 596 YTVLIHAHAARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRR--IDQAYGLFIDMEEEGILPN 662 (729)
Q Consensus 596 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 662 (729)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+...+++..+.+.|+-+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 345666777778888888888777521111 12334444455554332 3445566777766554433
No 303
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.48 E-value=2.8e+02 Score=24.40 Aligned_cols=34 Identities=9% Similarity=0.187 Sum_probs=17.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 004814 466 MGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK 500 (729)
Q Consensus 466 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 500 (729)
..+.+.|+-.+-+|++.| .|....-..++.+...
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsED 60 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYED 60 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhh
Confidence 455666666666666665 4444444444444433
No 304
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.38 E-value=2.3e+02 Score=24.87 Aligned_cols=37 Identities=11% Similarity=0.146 Sum_probs=16.7
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 004814 606 RGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLR 642 (729)
Q Consensus 606 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 642 (729)
..+.+.|+-.+-+|++.|-.|....-..++.+....|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455555555555555554443333333333333333
No 305
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.72 E-value=2.2e+02 Score=23.85 Aligned_cols=25 Identities=12% Similarity=0.266 Sum_probs=16.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 561 YTSIIHASLEMGDLRRGRDLFNNML 585 (729)
Q Consensus 561 ~~~l~~~~~~~g~~~~A~~~~~~~~ 585 (729)
...++.-|...|+.++|.+.++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4556666666777777777776653
No 306
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=28.38 E-value=1.5e+02 Score=26.62 Aligned_cols=51 Identities=16% Similarity=0.092 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 004814 611 LAFMYFSEMQVKGIRPN-VITYNALINGLCRLRRIDQAYGLFIDMEEEGILP 661 (729)
Q Consensus 611 ~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~p 661 (729)
++..+|..|..+|+.-. ...|......+...|++++|.++|+.-++.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44455555555544432 3345555555566666666666666655554444
No 307
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.19 E-value=3.2e+02 Score=24.28 Aligned_cols=69 Identities=14% Similarity=0.134 Sum_probs=37.8
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHHHH
Q 004814 598 VLIHAHA---ARGRLELAFMYFSEMQVKGIRPNVITYNALINGLCRLRRI-----DQAYGLFIDMEEEGILPNKYTY 666 (729)
Q Consensus 598 ~l~~~~~---~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~-----~~A~~~~~~m~~~g~~p~~~~~ 666 (729)
-+|+++. +..+.+.|+-.+-+|++.|-.|....-..++.+.-.-|.- .-|...++.....|.+--....
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~L 113 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFL 113 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3444443 3466777777777777776655554445555555555542 3444555555556654444433
No 308
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=27.48 E-value=3.1e+02 Score=23.85 Aligned_cols=10 Identities=10% Similarity=0.003 Sum_probs=3.7
Q ss_pred HHHHHHHHcC
Q 004814 388 TLLYGYCRSG 397 (729)
Q Consensus 388 ~li~~~~~~g 397 (729)
..+.++.+.+
T Consensus 162 ~a~~aL~~~~ 171 (211)
T 3ltm_A 162 SAADALGEIG 171 (211)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 3333333333
No 309
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=26.93 E-value=44 Score=30.89 Aligned_cols=19 Identities=16% Similarity=0.032 Sum_probs=8.5
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 004814 254 CKEGEMQEALELLWEMQGR 272 (729)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~ 272 (729)
++.|+.+....+++.+.+.
T Consensus 13 ~~~g~~~~v~~ll~~l~~~ 31 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTH 31 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 3445554444444444333
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.91 E-value=4.8e+02 Score=29.69 Aligned_cols=27 Identities=15% Similarity=0.073 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 004814 665 TYTILINENCNAGNWQEALRLYKEMLD 691 (729)
Q Consensus 665 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 691 (729)
-|..++..+.+.|-++-++++.+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 456666666666666666666666664
No 311
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=26.39 E-value=3e+02 Score=23.32 Aligned_cols=52 Identities=12% Similarity=0.017 Sum_probs=29.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHH-H-----HHHcCCHHHHHHHHHHHHH
Q 004814 570 EMGDLRRGRDLFNNMLRKGLSP--TLVTYTVLIH-A-----HAARGRLELAFMYFSEMQV 621 (729)
Q Consensus 570 ~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~A~~~~~~~~~ 621 (729)
..|++-+|.++++..-...-.+ ....|-.||+ . ..+.|+...|..++.+...
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3467777777777666553233 3445555555 1 1245666666666666544
No 312
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.20 E-value=3e+02 Score=31.31 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=63.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCc------------------
Q 004814 249 MLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLGLK------------------ 310 (729)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------------ 310 (729)
++..+...|.++-|.++..- ++.+...--.+..+|...|++++|.+.|+++-. |+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~-----~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGG-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhh-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccchhhhhhccCc
Confidence 44555556666555443211 222333323455666677777777777765431 110
Q ss_pred -----cChhhHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcC
Q 004814 311 -----VSAHSYNPIICGYSEKGLLVEALNLEEEMVTRGVAPTL----ATYNILIYGLCKWG 362 (729)
Q Consensus 311 -----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g 362 (729)
....-|..++..+-+.+.++.+.++-+...+.--.-|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 01125788999999999999999988888874222233 35667777776655
No 313
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.08 E-value=2.6e+02 Score=22.53 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=12.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 004814 353 ILIYGLCKWGRVSDARHRFFEML 375 (729)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~~~ 375 (729)
.++.-|...|+.++|.+.++++.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~ 34 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELE 34 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC
Confidence 34555555555555555555543
No 314
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=26.06 E-value=2e+02 Score=24.77 Aligned_cols=12 Identities=17% Similarity=0.410 Sum_probs=4.9
Q ss_pred hcCCHHHHHHHH
Q 004814 255 KEGEMQEALELL 266 (729)
Q Consensus 255 ~~g~~~~A~~~~ 266 (729)
..|+.+....++
T Consensus 14 ~~g~~~~v~~ll 25 (201)
T 3hra_A 14 NQRDTKKVKEIL 25 (201)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhccHHHHHHHH
Confidence 334444444333
No 315
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.70 E-value=2.5e+02 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 004814 352 NILIYGLCKWGRVSDARHRFFEML 375 (729)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~~~ 375 (729)
+.++.-|...|+.++|.+.++++.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 334555555555555555555553
No 316
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=25.44 E-value=45 Score=30.76 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=33.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCccChh-------hHHHHHHHHH--hCCCHHHHHHHHHHHH
Q 004814 285 ITGFSRNGELEQARGLIRDMLKLGLKVSAH-------SYNPIICGYS--EKGLLVEALNLEEEMV 340 (729)
Q Consensus 285 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~--~~g~~~~A~~~~~~m~ 340 (729)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|..+-+.-+++...
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 444567788888888888777766554432 2233433332 5577666666665543
No 317
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=24.09 E-value=3e+02 Score=24.19 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=8.6
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 004814 251 DSFCKEGEMQEALELLWE 268 (729)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~ 268 (729)
...++.|+.+....+++.
T Consensus 11 ~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 11 CNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHh
Confidence 334445555555554443
No 318
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=23.15 E-value=4.5e+02 Score=26.79 Aligned_cols=70 Identities=11% Similarity=0.110 Sum_probs=31.0
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 004814 238 GIKPSIVTYNTMLDSFCKEGEMQEALELLWEMQGRGCSPNGVTYNVLITGFSRNGELEQARGLIRDMLKLG 308 (729)
Q Consensus 238 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 308 (729)
|++--...|..-.+.+...|++++|-++-..... |+--+..|.+.+-..=..-|+..--...|..+.+.|
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 3333344455555556666666666665544433 233344443332222222233333444444444443
No 319
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=22.66 E-value=97 Score=22.81 Aligned_cols=17 Identities=24% Similarity=0.513 Sum_probs=10.2
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004814 674 CNAGNWQEALRLYKEML 690 (729)
Q Consensus 674 ~~~g~~~~A~~~~~~m~ 690 (729)
-+.|++++|+.+|.+.+
T Consensus 22 D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 35666666666666554
No 320
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.28 E-value=4e+02 Score=23.39 Aligned_cols=35 Identities=14% Similarity=0.077 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 004814 465 KMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGEL 499 (729)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~ 499 (729)
+..+.+.|+-.+-+|++.|-.|....-..++.+..
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsE 53 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASE 53 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34566666666667766665554444444444433
No 321
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=22.11 E-value=4.8e+02 Score=25.53 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=14.0
Q ss_pred HHHHHHHHHCCChhHHHHHHHHHH
Q 004814 212 NRIIKVLRDNGFSVKAREVYRMMG 235 (729)
Q Consensus 212 ~~ll~~l~~~g~~~~A~~~~~~~~ 235 (729)
..++.-|...|+.++|...++++.
T Consensus 16 ~~ii~EY~~~~D~~Ea~~~l~eL~ 39 (364)
T 3l6a_A 16 ETVVTEYLNSGNANEAVNGVREMR 39 (364)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhC
Confidence 445555566666666666666553
No 322
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.64 E-value=1.7e+02 Score=21.47 Aligned_cols=17 Identities=35% Similarity=0.511 Sum_probs=11.7
Q ss_pred HhcCCHHHHHHHHHHHH
Q 004814 674 CNAGNWQEALRLYKEML 690 (729)
Q Consensus 674 ~~~g~~~~A~~~~~~m~ 690 (729)
-+.|++++|+.+|.+.+
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 46777777777776665
No 323
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.67 E-value=4.5e+02 Score=23.34 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=20.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 004814 465 KMGNLSMAREFFNEMLRKGLQPDRFAYTTQIAGELK 500 (729)
Q Consensus 465 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~li~~~~~ 500 (729)
+..+.+.|+-.+-+|++.|-.|....-..++.+...
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsED 82 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACED 82 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence 345666666666666666655544444444444433
No 324
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.66 E-value=2.4e+02 Score=21.37 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 004814 398 NIGEAFLLFDELRSRNLVPTVVTYNTLIDGLCRYGDLEVAQ 438 (729)
Q Consensus 398 ~~~~A~~l~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 438 (729)
..++|.++++.+..+| ...|..++.++...|+..-|.
T Consensus 52 ~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 52 RRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp HHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 4556666666665554 345555555555555544443
No 325
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.41 E-value=1.7e+02 Score=28.49 Aligned_cols=22 Identities=14% Similarity=-0.010 Sum_probs=10.5
Q ss_pred HHHHHHHHCCChhHHHHHHHHH
Q 004814 213 RIIKVLRDNGFSVKAREVYRMM 234 (729)
Q Consensus 213 ~ll~~l~~~g~~~~A~~~~~~~ 234 (729)
.++.-|...|+.++|...++++
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHc
Confidence 3444444445555554444444
No 326
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=20.16 E-value=3.1e+02 Score=24.46 Aligned_cols=49 Identities=10% Similarity=0.074 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--H-----HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 004814 609 LELAFMYFSEMQVKGIRPNVI--T-----YNALINGLCRLRRIDQAYGLFIDMEEE 657 (729)
Q Consensus 609 ~~~A~~~~~~~~~~g~~p~~~--~-----~~~l~~~~~~~g~~~~A~~~~~~m~~~ 657 (729)
.+.|+.+|+.+.+.-.-++.. . -...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 567777887776642211111 0 123344567777777777777776653
Done!