BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004815
(729 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 169 bits (429), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 157/569 (27%), Positives = 250/569 (43%), Gaps = 38/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ +EL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 DLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT 185
Query: 289 QDLIIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 342
D +R +SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 186 ADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKAS 245
Query: 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 401
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 PEHQPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
Query: 402 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 457
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAI 361
Query: 458 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXXX 513
R + I+G D SS+R GS GE N + + W + + PV++
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGG 420
Query: 514 XXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571
L A L A S P G + ++ N+G PQ G L ++ G + TL
Sbjct: 421 FMITPLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLF 478
Query: 572 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629
+ YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 689
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVEKEIG 588
Query: 690 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 169 bits (428), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 157/569 (27%), Positives = 250/569 (43%), Gaps = 38/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ +EL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 DLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT 185
Query: 289 QDLIIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 342
D +R +SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 186 ADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKAS 245
Query: 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 401
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 PEHQPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
Query: 402 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 457
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAI 361
Query: 458 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXXX 513
R + I+G D SS+R GS GE N + + W + + PV++
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGG 420
Query: 514 XXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571
L A L A S P G + ++ N+G PQ G L ++ G + TL
Sbjct: 421 FMITPLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLF 478
Query: 572 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629
+ YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 689
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIG 588
Query: 690 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 157/569 (27%), Positives = 250/569 (43%), Gaps = 38/569 (6%)
Query: 169 QWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN 228
+W +N A NCL + + + D I W EGD K ++ +EL +V A L
Sbjct: 68 KWYEDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLL 125
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
LG+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T
Sbjct: 126 DLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVIT 185
Query: 289 QDLIIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVR 342
D +R +SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 186 ADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKAS 245
Query: 343 KLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIV 401
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 246 PEHQPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIY 301
Query: 402 AWPTNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIV 457
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +
Sbjct: 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAI 361
Query: 458 RTW--KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXXX 513
R + I+G D SS+R GS GE N + + W + + PV++
Sbjct: 362 RALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGG 420
Query: 514 XXXXSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571
L A L A S P G + ++ N+G PQ G L ++ G + TL
Sbjct: 421 FMITPLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLF 478
Query: 572 NANHY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629
+ YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 479 GDHERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIE 533
Query: 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLN 689
A + E A +G+P G V + +P +L + V+K++
Sbjct: 534 SALVA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIG 588
Query: 690 PLFKVSHVVPLPSLPRTATNKVMRRVLRK 718
PL + SLP+T + K+MRR+LRK
Sbjct: 589 PLATPDVLHWTDSLPKTRSGKIMRRILRK 617
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 169/626 (26%), Positives = 271/626 (43%), Gaps = 46/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y +K +N+ T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 345
+R +SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 346 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWP 404
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 249 QPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304
Query: 405 TNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 461 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXXXXXX 516
+ I+G D SS+R GS GE N + + W + + PV++
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMI 423
Query: 517 XSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 424 TPLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 575 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692
A + E A +G+P G V + +P +L + V K++ PL
Sbjct: 537 VA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVAKEIGPLA 591
Query: 693 KVSHVVPLPSLPRTATNKVMRRVLRK 718
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 169/626 (26%), Positives = 271/626 (43%), Gaps = 46/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y +K +N+ T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 345
+R SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 189 GVRAGASIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 346 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWP 404
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 249 QPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304
Query: 405 TNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 461 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXXXXXX 516
+ I+G D SS+R GS GE N + + W + + PV++
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMI 423
Query: 517 XSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 424 TPLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 575 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692
A + E A +G+P G V + +P +L + V+K++ PL
Sbjct: 537 VA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIGPLA 591
Query: 693 KVSHVVPLPSLPRTATNKVMRRVLRK 718
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 168/626 (26%), Positives = 271/626 (43%), Gaps = 46/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y +K +N+ T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ ++ R+ S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 345
+R +SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 346 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWP 404
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 249 QPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304
Query: 405 TNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 461 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXXXXXX 516
+ I+G D SS+R GS GE N + + W + + PV++
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMI 423
Query: 517 XSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 424 TPLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 575 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692
A + E A +G+P G V + +P +L + V+K++ PL
Sbjct: 537 VA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIGPLA 591
Query: 693 KVSHVVPLPSLPRTATNKVMRRVLRK 718
+ SLP+T + +MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGAIMRRILRK 617
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 168/626 (26%), Positives = 271/626 (43%), Gaps = 46/626 (7%)
Query: 120 SNFQEFSVSNPEVY---WKTVLNEMSTSFSVPPQCILRENP--NGENHLSNPGG---QWL 171
+N + + NPE Y +K +N+ T + + + P +N PG +W
Sbjct: 11 ANIADRCLINPEQYETKYKQSINDPDTFWGEQGKILDWITPYQKVKNTSFAPGNVSIKWY 70
Query: 172 PGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALG 231
+N A NCL + + + D I W EGD K ++ +EL +V A L LG
Sbjct: 71 EDGTLNLAANCLDRHLQENGDRTAIIW--EGDDTSQSKHISYRELHRDVCRFANTLLDLG 128
Query: 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291
+ KG +AI MPM + V LA G + I F+ ++ + S ++ + T D
Sbjct: 129 IKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADE 188
Query: 292 IIRGDKSIPLYSRVIDA-----QAPLAIVIPAKGSSFSMKLRDG-DISWLDFLERVRKLK 345
+R +SIPL V DA + VI K + + ++G D+ W D +E+
Sbjct: 189 GVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEH 248
Query: 346 ENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM-DIRKADIVAWP 404
+ E E P+ IL++SG+TG+PK + T AA + ++ D DI
Sbjct: 249 QPEAMNAEDPL----FILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCT 304
Query: 405 TNLGWMMG-PWLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460
++GW+ G +L+Y L GA+ ++ G P + + V +V +L P+ +R
Sbjct: 305 ADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRAL 364
Query: 461 --KSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK--PVIEYCXXXXXXXXXXX 516
+ I+G D SS+R GS GE N + + W + + PV++
Sbjct: 365 MAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD-TWWQTETGGFMI 423
Query: 517 XSLLQAQSLAAFST--PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574
L A L A S P G + ++ N+G PQ G L ++ G + TL +
Sbjct: 424 TPLPGAIELKAGSATRPFFGVQPALVDNEGH--PQEGATEGNLVITDSWPGQARTLFGDH 481
Query: 575 HY--DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERIC 632
YFS + + GD R GYY GR DD +N+ G ++ + EIE
Sbjct: 482 ERFEQTYFSTFKN-----MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESAL 536
Query: 633 NAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF 692
A + E A +G+P G V + +P +L + V+K++ PL
Sbjct: 537 VA-HPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSP----ELYAEVRNWVRKEIGPLA 591
Query: 693 KVSHVVPLPSLPRTATNKVMRRVLRK 718
+ SLP+T + K+MRR+LRK
Sbjct: 592 TPDVLHWTDSLPKTRSGKIMRRILRK 617
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 146/589 (24%), Positives = 246/589 (41%), Gaps = 64/589 (10%)
Query: 170 WLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN- 228
W +N NC+ ++ ++ + I + EGD S+T KEL EV VA L
Sbjct: 75 WFLNGQLNACYNCVDRHALKTPNKKAIIF--EGDEPGQGYSITYKELLEEVCQVAQVLTY 132
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
++G+ KG +A+ MPM +++ LAI G I + F+S + R+ +K + T
Sbjct: 133 SMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVIT 192
Query: 289 QDLIIRGDKSIPLYSRVIDA--QAP--LAIVIPAKGSSFSMKLRD-GDISWLDFLERVRK 343
D RG K I V DA + P +++ K ++ S+ D+ W ++ +
Sbjct: 193 TDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKT 252
Query: 344 LKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MDIRKADIVA 402
E P+ +L++SG+TG PK + + A A + D + D+
Sbjct: 253 YYPCTPVDSEDPL----FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFF 308
Query: 403 WPTNLGWMMG-PWLVYASLLNGASIALYNGSPLGSGFAKF---VQDAKVTMLGVVPSIVR 458
++GW+ G ++VY LL G + ++ G+P ++++ + + KVT V P+ +R
Sbjct: 309 TAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALR 368
Query: 459 TWKST--NCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCXXXXXXXXXXX 516
K + I+ + S+RC GS GE + + W Y
Sbjct: 369 LLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEW------------YSEKIGKNEIPIV 416
Query: 517 XSLLQAQSLAAFSTP-AMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANH 575
+ Q +S + TP A G G+ P G+ + L P + LN +H
Sbjct: 417 DTYWQTESGSHLVTPLAGGVTPMKPGSASFPF----FGIDAVVLDP----NTGEELNTSH 468
Query: 576 YDVYF---SGMPSRNGQILRRH-----------------GDVFERTSGGYYRAHGRADDT 615
+ + PS I + H GD + GY GR DD
Sbjct: 469 AEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDV 528
Query: 616 MNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNY---TPPD 672
+N+ G ++S+ EIE D V E A +G G VV+ S++ T +
Sbjct: 529 VNVSGHRLSTAEIEAAI-IEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDE 587
Query: 673 LNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
L ++ V+K + P ++ + LP+T + K+MRR+LRK LA
Sbjct: 588 LQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILA 636
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 121/562 (21%), Positives = 210/562 (37%), Gaps = 60/562 (10%)
Query: 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGS 236
N A + + V ++ S + + + WCD+ K T K+L+ A G+ KG
Sbjct: 56 NFAYDVVDVYARDSPEKLAMIWCDDYGNE---KIFTFKDLKYYSDKAANFFVKHGIGKGD 112
Query: 237 AIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGD 296
+ + + + L + G I V + +I R+ + K I + +
Sbjct: 113 YVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMI-----VCIAE 167
Query: 297 KSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF---LERVRKLKENEFAAVE 353
+P +V +A A IP K + + +G W+DF LE + E V
Sbjct: 168 DDVP--EQVDEAHAECGD-IPLKKAKVGGDVLEG---WIDFRKELEESSPIFERPTGEVS 221
Query: 354 QPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP 413
E + FSSGT G PK + N P A ++ + + GW
Sbjct: 222 TKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCV 281
Query: 414 W-LVYASLLNGASIALYNGSPL-GSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDW 471
W +Y + G ++ +Y+ + VT P+I R + + Y++
Sbjct: 282 WGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNF 340
Query: 472 SSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCXXXXXXXXXXXXSLLQAQSL------ 525
S+++ GE N + ++ +E+ +++ +
Sbjct: 341 STLKYAVVAGEPLNPE---------VFNRFLEFTGIKLMEGFGQTETVVTIATFPWMEPK 391
Query: 526 -AAFSTPAMGCKLFILGNDG--CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG 582
+ P G K+ ++ DG C + + GE+ ++ + G L V++
Sbjct: 392 PGSIGKPTPGYKIELMDRDGRLCEVGEE----GEIVINTME-GKPVGLF------VHYGK 440
Query: 583 MPSRNGQILR----RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 638
P R + GD+ GY GRADD + G KV E+E
Sbjct: 441 DPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESAL-IQHPA 499
Query: 639 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVV 698
VLE A GVP P G +V+ KD YTP D L+ V+ P +K ++
Sbjct: 500 VLECAITGVPDPVRGQVIKATIVLTKD--YTPSD--SLKNELQDHVKNVTAP-YKYPRII 554
Query: 699 P-LPSLPRTATNKVMRRVLRKQ 719
+P LP+T + K+ R +R +
Sbjct: 555 EFVPELPKTISGKIRRVEIRDK 576
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 120/512 (23%), Positives = 197/512 (38%), Gaps = 48/512 (9%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
MT ++ A A L ALG+ KG +A+ MP +V ++ G + V I A
Sbjct: 44 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 103
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330
+ E+S L S +K ++I G S P+ + P V G+
Sbjct: 104 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD-------- 149
Query: 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW 390
ER+R +E AVE + I+++SGTTG PK + T+ + AA+
Sbjct: 150 -----SLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWA 203
Query: 391 CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA---SIALYNGSPLGSGFAKFVQDAKV 447
+D+R D + P + + V S + G S+ ++ + + S + + +V
Sbjct: 204 STIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWS----LIVEERV 259
Query: 448 TMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCXX 507
+ G VP+I+ + D R F TG A + + + + V Y
Sbjct: 260 CIGGAVPAILNFMRQVPEFAELDAPDFRYF-ITGGAPMPEALIKIYAAKNIEVVQGYALT 318
Query: 508 XXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS 567
S + + M + + G+DG I ++ G GE+ + S
Sbjct: 319 ESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV-IREH--GEGEVVIK------S 369
Query: 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVE 627
LL + NG R GD+ E GY R D + GG V E
Sbjct: 370 DILLKEYWNRPEATRDAFDNGWF--RTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAE 427
Query: 628 IERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK 687
IE + V V E A IG+P G ++ +V D N Q+ + + +
Sbjct: 428 IESVIIGV-PGVSEVAVIGLPDEKWG--EIAAAIVVADQNEVSE--QQIVEYCGTRLARY 482
Query: 688 LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 719
P V+ ++PR T K+++ VLR+Q
Sbjct: 483 KLP----KKVIFAEAIPRNPTGKILKTVLREQ 510
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 6/127 (4%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R GD + R G Y GR+DD + + G VS VE+E + D+ VLE A +GV G
Sbjct: 409 RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDA-VLEAAVVGV--DHG 465
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
G + VV K + P ++ L + V+ +L P +V + LP+TAT K+
Sbjct: 466 GLVKTRAFVVLK-REFAPSEI--LAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQ 522
Query: 713 RRVLRKQ 719
R LR+Q
Sbjct: 523 RFKLREQ 529
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 115/523 (21%), Positives = 193/523 (36%), Gaps = 73/523 (13%)
Query: 210 SMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSF 269
+T L +A+ L LG+ G+ + + + + VV LA++ AG + F
Sbjct: 100 ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTMLDPQF 159
Query: 270 ASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRD 329
++ L + A + T S PL R+ + ++ + D
Sbjct: 160 PVERLALSLEDTGAPLLVT---------SRPLSGRLT--------------GTTTLYVED 196
Query: 330 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA 389
E A P E ++F+SG+TG PK + +P +A
Sbjct: 197 ---------EAASDAPAGNLATGVGP-EDVACVMFTSGSTGRPKGV----MSPHRALTGT 242
Query: 390 WCHMD---IRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS---PLGSGFAKFVQ 443
+ D ++ + + W ++ +LL GA L +G PL G + V
Sbjct: 243 YLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQSGQNPDPLEIG--ELVA 300
Query: 444 DAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV--------DEYLWLMGR 495
VTML + S+ + + ++ +R + GE ++V D +G
Sbjct: 301 RHGVTMLQLSASLF-NFLVDEVPEAFE--GVRYAITGGEPASVPHVAKARRDHPALRLGN 357
Query: 496 ALYKPVIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 555
Y P S + P G + ++L +D P G
Sbjct: 358 G-YGPAESMGFTTHHAVVAGDLS----GTALPIGVPLAGKRAYVLDDDLKPAANGALGEL 412
Query: 556 ELALSPLIFG-ASSTLLNANHYDVY-FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRAD 613
+A + L G S L A + F+G G+ + R GD+ R + G GRAD
Sbjct: 413 YVAGAGLAHGYVSRPALTAERFVADPFAGP---GGERMYRTGDLARRRADGVLEYVGRAD 469
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673
D + + G +V E+E V + AA+ G +QL VV + ++ PPD
Sbjct: 470 DQVKIRGFRVEPGEVE--ARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERAD-APPDA 526
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 716
+LR A+ + P+ VP+ LPRT K+ RR L
Sbjct: 527 AELRRHVAEALPAYMVPV----ECVPVDELPRTPNGKLDRRAL 565
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/274 (24%), Positives = 112/274 (40%), Gaps = 27/274 (9%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
MT ++ A A L ALG+ KG +A+ MP +V ++ G + V I A
Sbjct: 30 MTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRLA 89
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330
+ E+S L S +K ++I G S P+ + P V G+
Sbjct: 90 APEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGAD-------- 135
Query: 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW 390
ER+R +E AVE + I+++SGTTG PK + T+ + AA+
Sbjct: 136 -----SLAERLRSAAADE-PAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWA 189
Query: 391 CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGA---SIALYNGSPLGSGFAKFVQDAKV 447
+D+R D + P + + V S + G S+ ++ + + S + + +V
Sbjct: 190 STIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWS----LIVEERV 245
Query: 448 TMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
+ G VP+I+ + D R F + G
Sbjct: 246 CIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG 279
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 113/529 (21%), Positives = 195/529 (36%), Gaps = 67/529 (12%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
++++ +EL E +A L G KGS +A+ ++ V+ L ++ AG + +
Sbjct: 488 QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPK 547
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLR 328
IS L S A + T + A +P G++
Sbjct: 548 LPEDRISYMLADSAAACLLTHQEM-----------------KEQAAELPYTGTTL----- 585
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD 388
++D R + + A++ A+ I+++SGTTG+PK T+A +
Sbjct: 586 -----FIDDQTRFEEQASDPATAIDPNDPAY--IMYTSGTTGKPKGNITTHAN-IQGLVK 637
Query: 389 AWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVT 448
+M D +N + + YAS+LN A + + + L + ++T
Sbjct: 638 HVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTL-------LDTERLT 690
Query: 449 MLGVVPSIVRTWKSTNCID-----GYDW-SSIRCFGSTGEAS---NVDEYLWLMGRALYK 499
L + ++ + +T + G DW +RC GE + +V + L +MG
Sbjct: 691 DLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLI 750
Query: 500 PVIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELAL 559
L + S P ++IL P +GEL +
Sbjct: 751 NCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP--FGAVGELCI 808
Query: 560 SPLIFGASSTLLN-ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNL 618
S + G S +N A+ F P + G+ L R GD+ G GR DD + +
Sbjct: 809 SGM--GVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI 866
Query: 619 GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRM 678
G ++ EIE+ ++ A + + G + +V + QL
Sbjct: 867 RGHRIELEEIEKQLQEYPG--VKDAVVVADRHESGDASINAYLVNR---------TQLSA 915
Query: 679 SFNSAVQKKLNPLFKVSHVVP-LPSLPRTATNKVMRRVLRK----QLAQ 722
A KK P + V L LP T KV +R+L K QLA+
Sbjct: 916 EDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLLPKPDQDQLAE 964
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 114/533 (21%), Positives = 197/533 (36%), Gaps = 65/533 (12%)
Query: 208 VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD 267
V T E+ + L ALG+ G +A + + Y A+ G ++ +
Sbjct: 45 VHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANP 104
Query: 268 SFASLEISARLRISKAKAI-FTQDLI-----IRGDKSIPLYSRVIDAQAPLAIVIPAKGS 321
+ EI+ L ++ K + F +L+ IRG+ + V+D +AP
Sbjct: 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGELKTVQHFVVMDEKAP---------- 154
Query: 322 SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTN-A 380
+G +++ + L E V P A + +++GTTG PK + +++ A
Sbjct: 155 -------EGYLAYEEALG-------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHRA 200
Query: 381 TPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNGSPLGSGFA 439
+ A + V P + + W L YA+ L GA L +
Sbjct: 201 LVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLV 260
Query: 440 KFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVD-----EYLWLMG 494
+ VT VP++ G+ ++R G A+ E + +
Sbjct: 261 ELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARFERMGVEV 320
Query: 495 RALYKPVIEYCXXXXXXXXXXXXSLLQAQSL---AAFSTPAMGCKLFILGNDGCPIPQNV 551
R Y SL + + L A P +L + +G P+P++
Sbjct: 321 RQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDG 380
Query: 552 PGMGELALS-PLI----FGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYY 606
+GE+ L P I +G +A D +F R GD+ GY
Sbjct: 381 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFF------------RTGDIAVWDEEGYV 428
Query: 607 RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDS 666
R D + GG +SSV++E V E A + +P P E+ VVV +
Sbjct: 429 EIKDRLKDLIKSGGEWISSVDLENALMG-HPKVKEAAVVAIPHPK-WQERPLAVVVPRGE 486
Query: 667 NYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 719
TP +LN+ + A + +L + + +PRT+ K ++R LR+Q
Sbjct: 487 KPTPEELNEHLLKAGFA-KWQLPDAYVFAE-----EIPRTSAGKFLKRALREQ 533
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 109/515 (21%), Positives = 184/515 (35%), Gaps = 67/515 (13%)
Query: 217 RAEVW--LVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEI 274
R + W VA L A G+ G +A+ M ++V LAI+ G A + +
Sbjct: 65 RLDAWSDAVARTLLAEGVRPGDRVALRMSPGAEAIVAILAILKCGA---------AYVPV 115
Query: 275 SARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISW 334
R +S++ I D+ A I P +G + + +R ++
Sbjct: 116 DLRNPVSRSDFILA------------------DSGASALIGEPHEGCAVTRVVRTAAVA- 156
Query: 335 LDFLERVRKLKENEFAAVEQP----VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW 390
+ K+ E V E ++++SGTTG PK +P +A A A
Sbjct: 157 --------ECKDAEPGPVTGAPGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAP 208
Query: 391 CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIAL--YNGSPLGSGFAKFVQDAKVT 448
D D +L + W ++ + GA + + + + + + D VT
Sbjct: 209 SVFDFSGDDRWLLFHSLSFDFSVWEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVT 268
Query: 449 MLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYL-WLMGRALYKPV------ 501
++ P+ G D S +R GE W L +P
Sbjct: 269 VINQTPTAFLALTEAAVRGGRDVSGLRYVIFGGEKLTAPMLRPWAKAFGLDRPRLVNGYG 328
Query: 502 IEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPG-MGELALS 560
I L Q S+ + P+ G + ++G+DG + PG GEL LS
Sbjct: 329 ITETTVFTTFEEITEAYLAQDASIIGRALPSFGTR--VVGDDGRDV---APGETGELWLS 383
Query: 561 PLIFGASSTLLNANHYDVYFSGMPSRNGQILR--RHGDVFERTSGGYYRAHGRADDTMNL 618
+ + + G+ +R R GD+ G + GRAD + L
Sbjct: 384 GAQLAEGYLRRPELTAEKFPEVTDEKTGESVRYYRTGDLVSELPDGRFAYEGRADLQIKL 443
Query: 619 GGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRM 678
G ++ +IE AV + A+ V + P L +V + + +LR
Sbjct: 444 RGYRIELSDIE---TAVRRHDDVVDAV-VTVREFKPGDLRLVCAYVAREGSATTARELRN 499
Query: 679 SFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMR 713
+ + ++P + +PLP LPRT KV R
Sbjct: 500 HIKTLLPAYMHP----ARYLPLPGLPRTVNGKVDR 530
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDG 652
GD + GY++ GRADD +N G ++ E+E NA+ + V+ETA I P P
Sbjct: 438 GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVE---NALMEHPAVVETAVISSPDPVR 494
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
G VV+ S + D QL V+ P + + +LP+T T K+
Sbjct: 495 GEVVKAFVVL--ASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQ 552
Query: 713 RRVLRKQ 719
R LR +
Sbjct: 553 RAKLRDK 559
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 26/199 (13%)
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
A GL +G +A+ +P ++ L + AG I + S +I RL++SKAKA
Sbjct: 93 ACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKA--- 149
Query: 289 QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENE 348
I+ GD+ I V L I + S K DG WL+F +++
Sbjct: 150 ---IVAGDEVIQEVDTVASECPSLRIKL-----LVSEKSCDG---WLNF-KKLLNEASTT 197
Query: 349 FAAVEQPVEAFTNILFSSGTTGEPKAIPWT-NATPFKAAADA-WCHMDIRKADIVAWPTN 406
VE + + I F+SGT+G PK + ++ KA DA W ++ +DI+ ++
Sbjct: 198 HHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT--GLQASDIMWTISD 255
Query: 407 LGW-------MMGPWLVYA 418
GW +M PW + A
Sbjct: 256 TGWILNILCSLMEPWALGA 274
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN--VLETAAIGVPPPDG 652
GD + GY++ GRADD +N G ++ E+E NA+ + V+ETA I P P
Sbjct: 438 GDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVE---NALMEHPAVVETAVISSPDPVR 494
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
G VV+ S + D QL V+ P + + +LP+T T K+
Sbjct: 495 GEVVKAFVVL--ASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQ 552
Query: 713 RRVLRKQ 719
R LR +
Sbjct: 553 RAKLRDK 559
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 26/199 (13%)
Query: 229 ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFT 288
A GL +G +A+ +P ++ L + AG I + S +I RL++SKAKA
Sbjct: 93 ACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKA--- 149
Query: 289 QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENE 348
I+ GD+ I V L I + S K DG WL+F +++
Sbjct: 150 ---IVAGDEVIQEVDTVASECPSLRIKL-----LVSEKSCDG---WLNF-KKLLNEASTT 197
Query: 349 FAAVEQPVEAFTNILFSSGTTGEPKAIPWT-NATPFKAAADA-WCHMDIRKADIVAWPTN 406
VE + + I F+SGT+G PK + ++ KA DA W ++ +DI+ ++
Sbjct: 198 HHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDAGWT--GLQASDIMWTISD 255
Query: 407 LGW-------MMGPWLVYA 418
GW +M PW + A
Sbjct: 256 TGWILNILCSLMEPWALGA 274
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 112/268 (41%), Gaps = 32/268 (11%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS-LEISARLRIS 281
VA LN +G+ +G I + +P + V+ +L G I+ + A+ F++ E++ + S
Sbjct: 62 VASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITA-ANPFSTPAELAKHAKAS 120
Query: 282 KAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV 341
+AK + TQ Y +V D A+ S + D +
Sbjct: 121 RAKLLITQAC---------YYEKVKDF---------ARESDVKVMCVDSAPDGCLHFSEL 162
Query: 342 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 401
+ ENE V+ + + +SSGTTG PK + T+ + A +D ++
Sbjct: 163 TQADENEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQ---QVDGDNPNLY 219
Query: 402 AWPTNLGWMMGPWL-VYA-------SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVV 453
++ + P +YA L GA I + +GS ++ KV++ VV
Sbjct: 220 FHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGS-LLGLIEKYKVSIAPVV 278
Query: 454 PSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
P ++ + + +D +D SS+R S G
Sbjct: 279 PPVMMSIAKSPDLDKHDLSSLRMIKSGG 306
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 8/124 (6%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ + GY GR D + GG V EIE +A V+E+A IGVP D G
Sbjct: 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEIDAX-PGVVESAVIGVPHADFG- 438
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714
E +T VVV +D T D Q+ + + K P V+ + LPR KV +
Sbjct: 439 EGVTAVVV-RDKGAT-IDEAQVLHGLDGQLAKFKXP----KKVIFVDDLPRNTXGKVQKN 492
Query: 715 VLRK 718
VLR+
Sbjct: 493 VLRE 496
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 584 PSRNGQILRRH-----GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 638
P N Q+ GD+ +RT G R GR D +N GG K++S EIE++ +
Sbjct: 405 PEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLI-LLHPE 463
Query: 639 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVV 698
V+ A + + G E+ +V ++ L + M A Q KL K+
Sbjct: 464 VMHAALVAIVDEQFG-EKSCAFIVSRNPELKAVVLRRHLMELGIA-QYKLPDQIKL---- 517
Query: 699 PLPSLPRTATNKVMRRVLRKQL 720
+ SLP TA KV ++ LR L
Sbjct: 518 -IESLPLTAVGKVDKKQLRSIL 538
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 92/249 (36%), Gaps = 32/249 (12%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRI-- 280
+A L GL KG + +P +++ A++ AG +V++ S E++A ++
Sbjct: 68 LATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQ 127
Query: 281 ------SKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISW 334
S+ +F+ + I + L +I + + D
Sbjct: 128 PKLLIGSRQHEVFSNNQFIDSLHDVNLSPEII----------------LMLNHQATDFGL 171
Query: 335 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWT-NATPFKAAADA-WCH 392
LD++E E P + S G+TG PK IP T N + A A C
Sbjct: 172 LDWIETP---AETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICG 228
Query: 393 MDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY-NGSPLGSGFAKFVQDAKVTMLG 451
++ + A P +M+ L G + + N PL +Q +V M
Sbjct: 229 LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMAPNPEPLNC--FSIIQRHQVNMAS 286
Query: 452 VVPSIVRTW 460
+VPS V W
Sbjct: 287 LVPSAVIMW 295
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 150/378 (39%), Gaps = 52/378 (13%)
Query: 362 ILFSSGTTGEPKA--IPWTN-ATPFKAAADAW--CHMDIRKADIVAWPTNLGWMMGPWLV 416
++++SGTTG PK IP AT A ADAW D+ + + + G ++G +
Sbjct: 160 VVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVH-GLVLG---I 215
Query: 417 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID---GYDWSS 473
L G S+ + G G A+ + D TML VP++ T D +
Sbjct: 216 LGPLRRGGSVR-HLGRFSTEGAARELNDG-ATMLFGVPTMYHRIAETLPADPELAKALAG 273
Query: 474 IRCFGSTGEASNVDEYLWLMGRALYKPVIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAM 533
R S A V ++ + A + VIE + + ++ P
Sbjct: 274 ARLLVSGSAALPVHDHERIAA-ATGRRVIERYGMTETLMNTSVRADGEPRA-GTVGVPLP 331
Query: 534 GCKLFILGNDGCPIPQ-NVPGMGELAL-SPLIFGASSTLLN-------ANHYDVYFSGMP 584
G +L ++ DG PI + +GE+ + P +F + LN A D +F
Sbjct: 332 GVELRLVEEDGTPIAALDGESVGEIQVRGPNLF---TEYLNRPDATAAAFTEDGFF---- 384
Query: 585 SRNGQILRRHGDVFERTSGGYYRAHGR-ADDTMNLGGIKVSSVEIERICNAV--DSNVLE 641
R GD+ R GY R GR A D + GG K+ + EIE NA+ V E
Sbjct: 385 --------RTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIE---NALLEHPEVRE 433
Query: 642 TAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLP 701
A G P PD G E++ +V D + V +L P + V L
Sbjct: 434 AAVTGEPDPDLG-ERIVAWIVPADPAAP-----PALGTLADHVAARLAPHKRPRVVRYLD 487
Query: 702 SLPRTATNKVMRRVLRKQ 719
++PR K+M+R L +
Sbjct: 488 AVPRNDMGKIMKRALNRD 505
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 5/129 (3%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ GY GR D + GG V EIE +A+ V+E+A IGVP D G
Sbjct: 381 GDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM-PGVVESAVIGVPHADFGE 439
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714
VV+ ++ + P ++ L + V +L V+ + LPR V
Sbjct: 440 GVTAFVVLXRE--FAPSEI--LAEELXAFVXDRLAXFXMPXXVIFVDDLPRNTMGAVQXN 495
Query: 715 VLRKQLAQL 723
VLR+ +
Sbjct: 496 VLRETYXDI 504
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 198/528 (37%), Gaps = 71/528 (13%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T ELRA V VA L+A GL +A+ P + + V+ LA+ G + +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK---L 327
S E++ +LI RG+ + + + + Q AI G+ +
Sbjct: 90 SAELA--------------ELIKRGEMTAAVIA--VGRQVADAIFQSGSGARIIFLGDLV 133
Query: 328 RDGD-ISWLDFLERVRKLKENEFAAVEQPVE-AFTNILFSSGTTGEPKA--IPWTNATPF 383
RDG+ S+ +E ++ +P + AF I ++SGTTG PKA IP A
Sbjct: 134 RDGEPYSYGPPIEDPQR----------EPAQPAF--IFYTSGTTGLPKAAIIPQRAAESR 181
Query: 384 KAAADAWCHMDIRKADIVAWPTNLGWMMGPW--LVYASLLNGASIALYNGSPLGSGFAKF 441
+ + ++V L ++G + LV A L+G + + P+ + +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDA--LQL 239
Query: 442 VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 501
VQ +VT L P+ + + G SS++ + ++ G + V
Sbjct: 240 VQQEQVTSLFATPTHLDALAAAAAHAG---SSLKL--------DSLRHVTFAGATMPDAV 288
Query: 502 IEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS- 560
+E +A + P G ++ I + G+ E+ +
Sbjct: 289 LETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANG 348
Query: 561 ---PLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRAD 613
LI AS + V + P + L+ R DV T G R GR D
Sbjct: 349 EEGELIVAASDSAF------VGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVD 402
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673
D + GG + EIER+ V E IG+ G VV + L
Sbjct: 403 DMIISGGENIHPSEIERVLGTA-PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADAL 461
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
+ S A K+ F L LP+ A NKV+RR L +Q++
Sbjct: 462 DTFCRSSELADFKRPKRYFI------LDQLPKNALNKVLRRQLVQQVS 503
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 198/528 (37%), Gaps = 71/528 (13%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T ELRA V VA L+A GL +A+ P + + V+ LA+ G + +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK---L 327
S E++ +LI RG+ + + + + Q AI G+ +
Sbjct: 90 SAELA--------------ELIKRGEMTAAVIA--VGRQVADAIFQSGSGARIIFLGDLV 133
Query: 328 RDGD-ISWLDFLERVRKLKENEFAAVEQPVE-AFTNILFSSGTTGEPKA--IPWTNATPF 383
RDG+ S+ +E ++ +P + AF I ++SGTTG PKA IP A
Sbjct: 134 RDGEPYSYGPPIEDPQR----------EPAQPAF--IFYTSGTTGLPKAAIIPQRAAESR 181
Query: 384 KAAADAWCHMDIRKADIVAWPTNLGWMMGPW--LVYASLLNGASIALYNGSPLGSGFAKF 441
+ + ++V L ++G + LV A L+G + + P+ + +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA--LQL 239
Query: 442 VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 501
VQ +VT L P+ + + G SS++ + ++ G + V
Sbjct: 240 VQQEQVTSLFATPTHLDALAAAAAHAG---SSLKL--------DSLRHVTFAGATMPDAV 288
Query: 502 IEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS- 560
+E +A + P G ++ I + G+ E+ +
Sbjct: 289 LETVHQHLPGEKVNAYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANG 348
Query: 561 ---PLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRAD 613
LI AS + V + P + L+ R DV T G R GR D
Sbjct: 349 EEGELIVAASDSAF------VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVD 402
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673
D + GG + EIER+ V E IG+ G VV + L
Sbjct: 403 DMIISGGENIHPSEIERVLGTA-PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADAL 461
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
+ S A K+ F L LP+ A NKV+RR L +Q++
Sbjct: 462 DTFCRSSELADFKRPKRYFI------LDQLPKNALNKVLRRQLVQQVS 503
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 30/269 (11%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISK 282
+A + LG+++ + + +P V+ +LA G + F EI+ + + S
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 283 AKAIFTQDLIIRGDKSIPLYSRVIDAQAPL----AIVIPAKGSSFSMKLRDGDISWLDFL 338
K I T+ +R +D PL +VI + S+ + +G + + +
Sbjct: 161 TKLIITE-------------ARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELT 207
Query: 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKA 398
+ + E +VE + + +SSGTTG PK + T+ + A +D
Sbjct: 208 QSTTEASE-VIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ---QVDGENP 263
Query: 399 DIVAWPTNLGWMMGPWL-VYA-------SLLNGASIALYNGSPLGSGFAKFVQDAKVTML 450
++ ++ + P +YA L GA+I + + + +Q KVT+
Sbjct: 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINL-LLELIQRCKVTVA 322
Query: 451 GVVPSIVRTWKSTNCIDGYDWSSIRCFGS 479
+VP IV ++ + YD SSIR S
Sbjct: 323 PMVPPIVLAIAKSSETEKYDLSSIRVVKS 351
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 198/528 (37%), Gaps = 71/528 (13%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T ELRA V VA L+A GL +A+ P + + V+ LA+ G + +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK---L 327
S E++ +LI RG+ + + + + Q AI G+ +
Sbjct: 90 SAELA--------------ELIKRGEMTAAVIA--VGRQVADAIFQSGSGARIIFLGDLV 133
Query: 328 RDGD-ISWLDFLERVRKLKENEFAAVEQPVE-AFTNILFSSGTTGEPKA--IPWTNATPF 383
RDG+ S+ +E ++ +P + AF I ++SGTTG PKA IP A
Sbjct: 134 RDGEPYSYGPPIEDPQR----------EPAQPAF--IFYTSGTTGLPKAAIIPQRAAESR 181
Query: 384 KAAADAWCHMDIRKADIVAWPTNLGWMMGPW--LVYASLLNGASIALYNGSPLGSGFAKF 441
+ + ++V L ++G + LV A L+G + + P+ + +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA--LQL 239
Query: 442 VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 501
VQ +VT L P+ + + G SS++ + ++ G + V
Sbjct: 240 VQQEQVTSLFATPTHLDALAAAAAHAG---SSLKL--------DSLRHVTFAGATMPDAV 288
Query: 502 IEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS- 560
+E +A + P G ++ I + G+ E+ +
Sbjct: 289 LETVHQHLPGEKVNGYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANG 348
Query: 561 ---PLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRAD 613
LI AS + V + P + L+ R DV T G R GR D
Sbjct: 349 EEGELIVAASDSAF------VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVD 402
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673
D + GG + EIER+ V E IG+ G VV + L
Sbjct: 403 DMIISGGENIHPSEIERVLGTA-PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADAL 461
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
+ S A K+ F L LP+ A NKV+RR L +Q++
Sbjct: 462 DTFCRSSELADFKRPKRYFI------LDQLPKNALNKVLRRQLVQQVS 503
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 586 RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 645
G+ R GDV G+ R + + G ++ E+E + ++ V + A I
Sbjct: 412 EKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEA-VXDVAVI 470
Query: 646 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPR 705
G P + G E +V K D + V+++++ +V V + LPR
Sbjct: 471 GKPDEEAG-EVPKAFIVLKPEYRGKVDEEDII----EWVRERISGYKRVREVEFVEELPR 525
Query: 706 TATNKVMRRVLRKQLAQ 722
TA+ K++RR+LR++ A+
Sbjct: 526 TASGKLLRRLLREKEAE 542
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 121/528 (22%), Positives = 198/528 (37%), Gaps = 71/528 (13%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T ELRA V VA L+A GL +A+ P + + V+ LA+ G + +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK---L 327
S E++ +LI RG+ + + + + Q AI G+ +
Sbjct: 90 SAELA--------------ELIKRGEMTAAVIA--VGRQVADAIFQSGSGARIIFLGDLV 133
Query: 328 RDGD-ISWLDFLERVRKLKENEFAAVEQPVE-AFTNILFSSGTTGEPKA--IPWTNATPF 383
RDG+ S+ +E ++ +P + AF I ++SGTTG PKA IP A
Sbjct: 134 RDGEPYSYGPPIEDPQR----------EPAQPAF--IFYTSGTTGLPKAAIIPQRAAESR 181
Query: 384 KAAADAWCHMDIRKADIVAWPTNLGWMMGPW--LVYASLLNGASIALYNGSPLGSGFAKF 441
+ + ++V L ++G + LV A L+G + + P+ + +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA--LQL 239
Query: 442 VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 501
VQ +VT L P+ + + G SS++ + ++ G + V
Sbjct: 240 VQQEQVTSLFATPTHLDALAAAAAHAG---SSLKL--------DSLRHVTFAGATMPDAV 288
Query: 502 IEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS- 560
+E +A + P G ++ I + G+ E+ +
Sbjct: 289 LETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANG 348
Query: 561 ---PLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRAD 613
LI AS + V + P + L+ R DV T G R GR D
Sbjct: 349 EEGELIVAASDSAF------VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVD 402
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673
D + GG + EIER+ V E IG+ G VV + L
Sbjct: 403 DMIISGGENIHPSEIERVLGTA-PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADAL 461
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
+ S A K+ F L LP+ A NKV+RR L +Q++
Sbjct: 462 DTFCRSSELADFKRPKRYFI------LDQLPKNALNKVLRRQLVQQVS 503
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R GD+ T GY GRA D +N GG KV++ E+E A V + A + +P
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA-HPAVHDAAMVSMPDQFL 468
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVP-LPSLPRTATNKV 711
G ++ P D + ++++ +K+ V + S P+T KV
Sbjct: 469 GERSCVFII--------PRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKV 520
Query: 712 MRRVLRKQLAQ 722
++ LR+ +++
Sbjct: 521 SKKALREAISE 531
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 102/276 (36%), Gaps = 26/276 (9%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
+ +EL +A LG+ + + + +P + A+ G + V S S
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 272 LEISARLRISKAKAIFTQDLIIRGD-KSIPLYSRVIDAQAPLA--IVIPAKGSSFSMKLR 328
EI+ ++A A D D +S+ +R + ++ P I++ + F
Sbjct: 112 SEITYFCEFAEAAAYIIPDAYSGFDYRSL---ARQVQSKLPTLKNIIVAGEAEEF----- 163
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT---PFKA 385
+ D KL E + + V AF + S G+TG K IP T+ K
Sbjct: 164 ---LPLEDLHTEPVKLPEVKSSDV-----AFLQL--SGGSTGLSKLIPRTHDDYIYSLKR 213
Query: 386 AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDA 445
+ + C +D + A P + + V L G + L + SP ++
Sbjct: 214 SVEV-CWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL-SPSPSPDDAFPLIERE 271
Query: 446 KVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
KVT+ +VP + W D SS++ G
Sbjct: 272 KVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGG 307
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ GY GR D + GG V EIE +A+ V+E+A IGVP D G
Sbjct: 381 GDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM-PGVVESAVIGVPHADFG- 438
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714
E +T VVV +D T + L + +L V+ + LPR V
Sbjct: 439 EGVTAVVV-RDXGATIDEAQVLH-----GLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXN 492
Query: 715 VLRKQLAQL 723
VLR+ +
Sbjct: 493 VLRETYXDI 501
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R GD+ T GY GRA D +N GG KV++ E+E A V + A + P
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLA-HPAVHDAAXVSXPDQFL 468
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVP-LPSLPRTATNKV 711
G ++ P D + ++++ +K+ V + S P+T KV
Sbjct: 469 GERSCVFII--------PRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKV 520
Query: 712 MRRVLRKQLAQ 722
++ LR+ +++
Sbjct: 521 SKKALREAISE 531
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 102/276 (36%), Gaps = 26/276 (9%)
Query: 212 TLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271
+ +EL +A LG+ + + + +P + A+ G + V S S
Sbjct: 52 SYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRS 111
Query: 272 LEISARLRISKAKAIFTQDLIIRGD-KSIPLYSRVIDAQAPLA--IVIPAKGSSFSMKLR 328
EI+ ++A A D D +S+ +R + ++ P I++ + F
Sbjct: 112 SEITYFCEFAEAAAYIIPDAYSGFDYRSL---ARQVQSKLPTLKNIIVAGEAEEF----- 163
Query: 329 DGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNAT---PFKA 385
+ D KL E + + V AF + S G+TG K IP T+ K
Sbjct: 164 ---LPLEDLHTEPVKLPEVKSSDV-----AFLQL--SGGSTGLSKLIPRTHDDYIYSLKR 213
Query: 386 AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDA 445
+ + C +D + A P + + V L G + L + SP ++
Sbjct: 214 SVEV-CWLDHSTVYLAALPXAHNYPLSSPGVLGVLYAGGRVVL-SPSPSPDDAFPLIERE 271
Query: 446 KVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
KVT+ +VP + W D SS++ G
Sbjct: 272 KVTITALVPPLAXVWXDAASSRRDDLSSLQVLQVGG 307
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 8/124 (6%)
Query: 595 GDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654
GD+ GY GR D + GG V EIE +A+ V+E+A IGVP D G
Sbjct: 381 GDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDAM-PGVVESAVIGVPHADFGE 439
Query: 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRR 714
VV+ ++ + P + L + +L V+ + LPR V
Sbjct: 440 GVTAFVVLXRE--FAPSEAQVLH-----GLDGQLAXFXMPXXVIFVDDLPRNTMGAVQXN 492
Query: 715 VLRK 718
VLR+
Sbjct: 493 VLRE 496
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/252 (17%), Positives = 103/252 (40%), Gaps = 33/252 (13%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+ +T EL + +A G+ K + + I M +++ + LA++ AG V I
Sbjct: 63 EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDIE 122
Query: 269 FASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRV-IDAQAPLAIVIPAKGSSFSMKL 327
+ I L S+A+ + TQ ++ +I +V I + + I +G++ +
Sbjct: 123 YPKERIQYILDDSQARMLLTQKHLVHLIHNIQFNGQVEIFEEDTIKI---REGTNLHVPS 179
Query: 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA 387
+ D+++ ++++SGTTG PK +
Sbjct: 180 KSTDLAY---------------------------VIYTSGTTGNPKGTMLEHKGISNLKV 212
Query: 388 DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGS--GFAKFVQDA 445
+++ + D + ++ + W ++ +LL GAS+ + + F +++
Sbjct: 213 FFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQK 272
Query: 446 KVTMLGVVPSIV 457
++T++ + P+ V
Sbjct: 273 EITVITLPPTYV 284
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 120/528 (22%), Positives = 197/528 (37%), Gaps = 71/528 (13%)
Query: 211 MTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270
+T ELRA V VA L+A GL +A+ P + + V+ LA+ G + +
Sbjct: 30 LTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRLK 89
Query: 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMK---L 327
S E++ +LI RG+ + + + + Q AI G+ +
Sbjct: 90 SAELA--------------ELIKRGEMTAAVIA--VGRQVADAIFQSGSGARIIFLGDLV 133
Query: 328 RDGD-ISWLDFLERVRKLKENEFAAVEQPVE-AFTNILFSSGTTGEPKA--IPWTNATPF 383
RDG+ S+ +E ++ +P + AF I ++SGTTG PKA IP A
Sbjct: 134 RDGEPYSYGPPIEDPQR----------EPAQPAF--IFYTSGTTGLPKAAIIPQRAAESR 181
Query: 384 KAAADAWCHMDIRKADIVAWPTNLGWMMGPW--LVYASLLNGASIALYNGSPLGSGFAKF 441
+ + ++V L ++G + LV A L+G + + P+ + +
Sbjct: 182 VLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDA--LQL 239
Query: 442 VQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPV 501
VQ +VT L P+ + + G SS++ + ++ G + V
Sbjct: 240 VQQEQVTSLFATPTHLDALAAAAAHAG---SSLKL--------DSLRHVTFAGATMPDAV 288
Query: 502 IEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALS- 560
+E +A + P G ++ I + G+ E+ +
Sbjct: 289 LETVHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANG 348
Query: 561 ---PLIFGASSTLLNANHYDVYFSGMPSRNGQILR----RHGDVFERTSGGYYRAHGRAD 613
LI AS + V + P + L+ R DV T G R GR
Sbjct: 349 EEGELIVAASDSAF------VGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVP 402
Query: 614 DTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL 673
D + GG + EIER+ V E IG+ G VV + L
Sbjct: 403 DMIISGGENIHPSEIERVLGTA-PGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADAL 461
Query: 674 NQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721
+ S A K+ F L LP+ A NKV+RR L +Q++
Sbjct: 462 DTFCRSSELADFKRPKRYFI------LDQLPKNALNKVLRRQLVQQVS 503
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 593 RHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652
R DV T G R GR DD + GG + EIER+ V E IG+
Sbjct: 382 RTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTA-PGVTEVVVIGLADQRW 440
Query: 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVM 712
G VV + L+ S A K+ F L LP+ A NKV+
Sbjct: 441 GQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFI------LDQLPKNALNKVL 494
Query: 713 RRVLRKQLA 721
RR L +Q++
Sbjct: 495 RRQLVQQVS 503
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 114/279 (40%), Gaps = 45/279 (16%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA---DSFASLEISARLR 279
+A A+ GL+ I + + NS+ ++ ++ A +I V++A D + E+ +
Sbjct: 68 LAEAMKRYGLNTNHRIVVS---SENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMN 124
Query: 280 ISKAKAIFTQ----DLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWL 335
IS+ +F I+ K +P+ ++I ++ +K G S
Sbjct: 125 ISQPTVVFVSKKGLQKILNVQKKLPIIQKII--------IMDSKTD------YQGFQSMY 170
Query: 336 DFLERVRKLKENEFAAVEQPVE---AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH 392
F+ NE+ V + + I+ SSG+TG PK + A P +A A + H
Sbjct: 171 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGV----ALPHRALAVRFSH 226
Query: 393 ---------MDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIAL-YNGSPLGSGFAKFV 442
+ A + P + G+ M L Y L++G + L Y F + +
Sbjct: 227 ARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGY--LISGFRVVLMYRFEE--ELFLRSL 282
Query: 443 QDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
QD K+ +VP++ + ID YD S++ S G
Sbjct: 283 QDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGG 321
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 80/385 (20%), Positives = 139/385 (36%), Gaps = 35/385 (9%)
Query: 347 NEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--WCHMDIRKADIVAWP 404
+F A P + S GTTG PK IP T+ + + + C + + A P
Sbjct: 174 EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIP 233
Query: 405 TNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN 464
+ M L G ++ L P + ++ +V + +VP V W
Sbjct: 234 AAHNYAMSSPGSLGVFLAGGTVVL-AADPSATLCFPLIEKHQVNVTALVPPAVSLWLQA- 291
Query: 465 CIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCXXXXXXXXXXXXSLLQAQS 524
I+G + + + L + G L + + A+
Sbjct: 292 LIEGESRAQLASL----------KLLQVGGARLSATLAARIPAEIGCQLQQVFGM--AEG 339
Query: 525 LAAFSTPAMGCKLFILGNDGCPI-PQNVPGMGELALSPLIFGASSTLLNANHYDVY-FSG 582
L ++ + I+ G P+ P + + + +PL G L+ Y +
Sbjct: 340 LVNYTRLDDSAEK-IIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYK 398
Query: 583 MPSRNGQILRRHG-----DVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637
P N +G D+ GY GR D +N GG K+++ EIE +
Sbjct: 399 SPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLL-LRHP 457
Query: 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SH 696
V+ A + + G + +VV + P Q+R ++++ FK+
Sbjct: 458 AVIYAALVSMEDELMGEKSCAYLVVKE-----PLRAVQVR----RFLREQGIAEFKLPDR 508
Query: 697 VVPLPSLPRTATNKVMRRVLRKQLA 721
V + SLP TA KV ++ LR+ LA
Sbjct: 509 VECVDSLPLTAVGKVDKKQLRQWLA 533
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 357 EAFTNILFSSGTTGEPKAIPWTN---ATPFKAAADAWCHMDIR--KADIVAWPTNLGWMM 411
E I+ SSG+TG PK + T+ T F A D + A + P + G+ M
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 412 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDW 471
L Y L+ G + + + F K +QD K T + +VP++ + ++ YD
Sbjct: 252 FTTLGY--LICGFRVVMLTKFDEET-FLKTLQDYKCTSVILVPTLFAILNKSELLNKYDL 308
Query: 472 SSIRCFGSTG 481
S++ S G
Sbjct: 309 SNLVEIASGG 318
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 357 EAFTNILFSSGTTGEPKAIPWTN---ATPFKAAADAWCHMDIR--KADIVAWPTNLGWMM 411
E I+ SSG+TG PK + T+ T F A D + A + P + G+ M
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 412 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDW 471
L Y L+ G + + + F K +QD K T + +VP++ + ++ YD
Sbjct: 252 FTTLGY--LICGFRVVMLTKFDEET-FLKTLQDYKCTSVILVPTLFAILNKSELLNKYDL 308
Query: 472 SSIRCFGSTG 481
S++ S G
Sbjct: 309 SNLVEIASGG 318
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 37/275 (13%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA---DSFASLEISARLR 279
+A A+ GL+ I + + NS+ ++ ++ A +I V++A D + E+ +
Sbjct: 68 LAEAMKRYGLNTNHRIVV---CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 124
Query: 280 ISKAKAIFTQ----DLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWL 335
IS+ +F I+ K +P+ ++I ++ +K G S
Sbjct: 125 ISQPTVVFVSKKGLQKILNVQKKLPIIQKII--------IMDSKTD------YQGFQSMY 170
Query: 336 DFLERVRKLKENEFAAVEQPVE---AFTNILFSSGTTGEPKAIPWTNATP---FKAAADA 389
F+ NE+ V + + I+ SSG+TG PK + + T F A D
Sbjct: 171 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDP 230
Query: 390 WCHMDI--RKADIVAWPTNLGWMMGPWLVYASLLNGASIAL-YNGSPLGSGFAKFVQDAK 446
I A + P + G+ M L Y L+ G + L Y F + +QD K
Sbjct: 231 IFGNQIIPDTAILSVVPFHHGFGMFTTLGY--LICGFRVVLMYRFEE--ELFLRSLQDYK 286
Query: 447 VTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
+ +VP++ + + ID YD S++ S G
Sbjct: 287 IQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 321
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 37/275 (13%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA---DSFASLEISARLR 279
+A A+ GL+ I + + NS+ ++ ++ A +I V++A D + E+ +
Sbjct: 63 LAEAMKRYGLNTNHRIVV---CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 119
Query: 280 ISKAKAIFTQ----DLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWL 335
IS+ +F I+ K +P+ ++I ++ +K G S
Sbjct: 120 ISQPTVVFVSKKGLQKILNVQKKLPIIQKII--------IMDSKTD------YQGFQSMY 165
Query: 336 DFLERVRKLKENEFAAVEQPVE---AFTNILFSSGTTGEPKAIPWTNATP---FKAAADA 389
F+ NE+ V + + I+ SSG+TG PK + + T F A D
Sbjct: 166 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDP 225
Query: 390 WCHMDI--RKADIVAWPTNLGWMMGPWLVYASLLNGASIAL-YNGSPLGSGFAKFVQDAK 446
I A + P + G+ M L Y L+ G + L Y F + +QD K
Sbjct: 226 IFGNQIIPDTAILSVVPFHHGFGMFTTLGY--LICGFRVVLMYRFEE--ELFLRSLQDYK 281
Query: 447 VTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
+ +VP++ + + ID YD S++ S G
Sbjct: 282 IQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 37/275 (13%)
Query: 223 VAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA---DSFASLEISARLR 279
+A A+ GL+ I + + NS+ ++ ++ A +I V++A D + E+ +
Sbjct: 63 LAEAMKRYGLNTNHRIVV---CSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMN 119
Query: 280 ISKAKAIFTQ----DLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWL 335
IS+ +F I+ K +P+ ++I ++ +K G S
Sbjct: 120 ISQPTVVFVSKKGLQKILNVQKKLPIIQKII--------IMDSKTD------YQGFQSMY 165
Query: 336 DFLERVRKLKENEFAAVEQPVE---AFTNILFSSGTTGEPKAIPWTNATP---FKAAADA 389
F+ NE+ V + + I+ SSG+TG PK + + T F A D
Sbjct: 166 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDP 225
Query: 390 WCHMDI--RKADIVAWPTNLGWMMGPWLVYASLLNGASIAL-YNGSPLGSGFAKFVQDAK 446
I A + P + G+ M L Y L+ G + L Y F + +QD K
Sbjct: 226 IFGNQIIPDTAILSVVPFHHGFGMFTTLGY--LICGFRVVLMYRFEE--ELFLRSLQDYK 281
Query: 447 VTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTG 481
+ +VP++ + + ID YD S++ S G
Sbjct: 282 IQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGG 316
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 357 EAFTNILFSSGTTGEPKAIPWTN---ATPFKAAADAWCHMDIR--KADIVAWPTNLGWMM 411
E I+ SSG+TG PK + T+ T F A D + A + P + G+ M
Sbjct: 192 EQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGM 251
Query: 412 GPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDW 471
L Y L+ G + + + F K +QD K T + +VP++ + ++ YD
Sbjct: 252 FTTLGY--LICGFRVVMLTKFDEET-FLKTLQDYKCTNVILVPTLFAILNKSELLNKYDL 308
Query: 472 SSIRCFGSTG 481
S++ S G
Sbjct: 309 SNLVEIASGG 318
>pdb|4GS5|A Chain A, The Crystal Structure Of Acyl-Coa Synthetase
(Amp-Forming)AMP-Acid Ligase Ii-Like Protein From
Dyadobacter Fermentans Dsm 18053
Length = 358
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 587 NGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNV-LETAAI 645
NGQ ++ + D+ E G ++ GRAD+ +N GG+K+ +I++ AV ++ + A
Sbjct: 226 NGQTVQTN-DLVE-IHGNAFQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFF 283
Query: 646 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQ-LRMSFNSAVQKKLNPLFKVSHVVPLPSLP 704
PD Q ++V+ N P L + L S V NP H+ +
Sbjct: 284 CWWEPDAKLGQKLVLVI---ENAXPEALTERLTAEIRSRVSTYENP----KHIYFAKAFA 336
Query: 705 RTATNKVMRRVLRKQLA 721
+T T+K+ +R ++L+
Sbjct: 337 KTQTDKIDKRATFQKLS 353
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 527 AFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN-HY-DVYFSGMP 584
A TP C+ ++ P +N G G P FGA S LLN++ HY ++ ++ +P
Sbjct: 576 ALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNSSRHYLNIRYTLLP 635
Query: 585 SRNGQILRRH--GDVFER 600
R H GD R
Sbjct: 636 YLYTLFFRAHSRGDTVAR 653
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 527 AFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN-HY-DVYFSGMP 584
A TP C+ ++ P +N G G P FGA S LLN++ HY ++ ++ +P
Sbjct: 576 ALDTPEELCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNSSRHYLNIRYTLLP 635
Query: 585 SRNGQILRRH--GDVFER 600
R H GD R
Sbjct: 636 YLYTLFFRAHSRGDTVAR 653
>pdb|1TEY|A Chain A, Nmr Structure Of Human Histone Chaperone, Asf1a
pdb|2IIJ|A Chain A, Structure Of Human Asf1a In Complex With Histone H3
Length = 158
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 15 YDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSFHQLLYYGCY 74
Y+ I + E L E L + G+A + + +L +P H ++
Sbjct: 21 YNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADA 80
Query: 75 KDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGY 112
+ P IPD +A VT V RG+EF+ GY
Sbjct: 81 PN-----PGLIPDADAVGVTVVLITCTYRGQEFIRVGY 113
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 350 AAVEQPVEAFTNIL---FSSGTTGEPKAIPWTNATPFK-AAADAWCHMDIRKADIVAWPT 405
A+V +P A I FSSGTTG PKAI T+A + ++ + +V P
Sbjct: 154 ASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLAFAPQMRFLVNSP- 212
Query: 406 NLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAK 440
L + ++ +LLNG L + PL G +
Sbjct: 213 -LSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLR 246
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 217 RAEVWLVAYALNALGLDKGSAIAIDMPM-NVNSVVIYLAIVLAGYIVVSIADSFASLEIS 275
RAE+W A L +G+ +A++ P V + V++ V G++ +S A L +
Sbjct: 713 RAELWAHPETARAEALPEGAQVAVETPFGRVEARVVHREDVPKGHLYLSALGPAAGLRVE 772
Query: 276 ARLRI 280
R+ +
Sbjct: 773 GRVLV 777
>pdb|2I32|A Chain A, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
pdb|2I32|B Chain B, Structure Of A Human Asf1a-Hira Complex And Insights Into
Specificity Of Histone Chaperone Complex Assembly
Length = 182
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 15 YDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSFHQLLYYGCY 74
Y+ I + E L E L + G+A + + +L +P H ++
Sbjct: 44 YNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADA 103
Query: 75 KDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGY 112
+ P IPD +A VT V RG+EF+ GY
Sbjct: 104 PN-----PGLIPDADAVGVTVVLITCTYRGQEFIRVGY 136
>pdb|3AAD|B Chain B, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
pdb|3AAD|D Chain D, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 158
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 5/98 (5%)
Query: 15 YDIEALGIPSKLAEQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSFHQLLYYGCY 74
Y+ I + E L E L + G+A + + +L +P H ++
Sbjct: 22 YNPFQFEITFECIEDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADA 81
Query: 75 KDFGPDPPAWIPDPEAAKVTNVGKLLQTRGEEFLGSGY 112
+ P IPD +A VT V RG+EF+ GY
Sbjct: 82 PN-----PGLIPDADAVGVTVVLITCTYRGQEFIRVGY 114
>pdb|2IO5|A Chain A, Crystal Structure Of The Cia- Histone H3-H4 Complex
Length = 175
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)
Query: 28 EQLHEKLAEIVNTHGAATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPDPPAWIPD 87
E L E L + G+A + + +L +P H ++ + P IPD
Sbjct: 35 EDLSEDLEWKIIYVGSAESEEYDQVLDSVLVGPVPAGRHMFVFQADAPN-----PGLIPD 89
Query: 88 PEAAKVTNVGKLLQTRGEEFLGSGY 112
+A VT V RG+EF+ GY
Sbjct: 90 ADAVGVTVVLITCTYRGQEFIRVGY 114
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 67/159 (42%), Gaps = 27/159 (16%)
Query: 235 GSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIR 294
G AIA+ + ++ + I + I +G V I + S LR S+A F D
Sbjct: 79 GRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPNDRKSFLLRDSRAAXAFVCDNNFD 138
Query: 295 GDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQ 354
G + +P ++V+D K SF L D S D L EN
Sbjct: 139 GVE-LPPETKVLDT----------KNQSFIENLSTQDTS--DILN---NYPEN------- 175
Query: 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHM 393
++A+ +L++SG+TG PK + + + +DAW +
Sbjct: 176 -LDAY--LLYTSGSTGTPKGVRVSRHN-LSSFSDAWGKL 210
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 105/530 (19%), Positives = 196/530 (36%), Gaps = 79/530 (14%)
Query: 209 KSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS 268
+S T + L E L+A L A + S + + + ++ S+++ A LA + I
Sbjct: 25 ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLANIEIAMINTR 81
Query: 269 FASLEISARLRISKAKAIF-TQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKL 327
E++ ++R + IF T L +RG + + L ++
Sbjct: 82 LTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL---------------------DDIEF 120
Query: 328 RDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNIL-------------FSSGTTGEPKA 374
DI+ L+ ++ + P E+ +NIL F+SGTTG KA
Sbjct: 121 AGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKA 180
Query: 375 IPWTNATPFKAAADAWCHMDIRKADIVAWPTNL--GWMMGPWLVYASLLNGASIALYNGS 432
+P T + +A C + W + L + G ++ +++ G ++ + +
Sbjct: 181 VPQTFRNHYASAIG--CKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKF 238
Query: 433 PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWL 492
+++ ++T + +VP + + Y+ I G+ A+ ++ L
Sbjct: 239 N-AEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAKLSATMIETALQY 297
Query: 493 MGRALYKP--VIEYCXXXXXXXXXXXXSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQN 550
+Y + E C +L A+ P+ + I N
Sbjct: 298 -NLPIYNSFGMTETCSQFLTATP----EMLHARP-DTVGMPSANVDVKIKN-------PN 344
Query: 551 VPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHG 610
G GEL +I GA+ ++N Y +G NG GD+ E GY +
Sbjct: 345 KEGHGEL----MIKGAN--VMNGYLYPTDLTG-TFENGYF--NTGDIAEIDHEGYVMIYD 395
Query: 611 RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP 670
R D + GG + +IE + + A+ V PD Q+ + +S+ +
Sbjct: 396 RRKDLIISGGENIYPYQIETVAKQFPG---ISDAVCVGHPDDTWGQVPKLYFVSESDISK 452
Query: 671 PDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQ 719
L A K +KV H + +LP T+T K+ R L ++
Sbjct: 453 AQL--------IAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYRE 494
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,650,576
Number of Sequences: 62578
Number of extensions: 994825
Number of successful extensions: 2192
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2062
Number of HSP's gapped (non-prelim): 102
length of query: 729
length of database: 14,973,337
effective HSP length: 106
effective length of query: 623
effective length of database: 8,340,069
effective search space: 5195862987
effective search space used: 5195862987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)