Query 004815
Match_columns 729
No_of_seqs 347 out of 3325
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:39:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004815.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004815hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 4E-94 1.4E-98 891.8 28.0 637 18-721 302-959 (1304)
2 1pg4_A Acetyl-COA synthetase; 100.0 3.4E-88 1.2E-92 782.3 55.7 581 118-722 23-621 (652)
3 1ry2_A Acetyl-coenzyme A synth 100.0 5.9E-88 2E-92 780.7 56.4 592 112-722 19-637 (663)
4 3etc_A AMP-binding protein; ad 100.0 1E-82 3.5E-87 726.6 50.6 523 168-722 47-579 (580)
5 4dg8_A PA1221; ANL superfamily 100.0 2.8E-82 9.6E-87 727.0 42.8 479 178-722 28-513 (620)
6 3ni2_A 4-coumarate:COA ligase; 100.0 2.8E-81 9.6E-86 710.0 50.4 503 178-722 23-535 (536)
7 3g7s_A Long-chain-fatty-acid-- 100.0 5.4E-82 1.8E-86 717.9 44.5 516 179-727 21-547 (549)
8 4fuq_A Malonyl COA synthetase; 100.0 1.3E-80 4.5E-85 698.6 48.0 496 181-723 4-501 (503)
9 3e7w_A D-alanine--poly(phospho 100.0 4.9E-80 1.7E-84 695.9 48.7 497 180-726 4-507 (511)
10 3rg2_A Enterobactin synthase c 100.0 9.6E-80 3.3E-84 708.6 51.0 499 179-722 29-534 (617)
11 3fce_A D-alanine--poly(phospho 100.0 2.6E-80 8.8E-85 698.6 44.4 498 180-725 4-507 (512)
12 3c5e_A Acyl-coenzyme A synthet 100.0 3.4E-79 1.2E-83 696.6 52.4 522 167-726 28-566 (570)
13 1amu_A GRSA, gramicidin synthe 100.0 7E-80 2.4E-84 701.2 45.4 482 178-720 40-527 (563)
14 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.1E-80 1E-84 701.6 41.8 500 179-722 27-531 (539)
15 3r44_A Fatty acyl COA syntheta 100.0 7.8E-80 2.7E-84 694.6 43.8 495 177-722 16-513 (517)
16 3l8c_A D-alanine--poly(phospho 100.0 3.8E-79 1.3E-83 690.8 44.4 499 179-724 6-514 (521)
17 4gr5_A Non-ribosomal peptide s 100.0 1.5E-80 5.1E-85 709.0 32.6 488 178-720 76-569 (570)
18 1t5h_X 4-chlorobenzoyl COA lig 100.0 3E-78 1E-82 680.2 48.7 487 179-721 4-503 (504)
19 3o83_A Peptide arylation enzym 100.0 1E-79 3.5E-84 698.1 35.1 505 179-723 32-541 (544)
20 2d1s_A Luciferase, luciferin 4 100.0 4.9E-78 1.7E-82 684.5 48.8 502 179-722 27-543 (548)
21 3tsy_A Fusion protein 4-coumar 100.0 2.5E-79 8.4E-84 741.2 37.0 561 118-722 12-582 (979)
22 3ivr_A Putative long-chain-fat 100.0 3.7E-79 1.3E-83 688.7 34.7 497 179-727 8-506 (509)
23 1v25_A Long-chain-fatty-acid-C 100.0 7.4E-79 2.5E-83 690.6 36.0 501 179-723 20-537 (541)
24 3rix_A Luciferase, luciferin 4 100.0 4.9E-79 1.7E-83 693.8 34.4 512 178-723 21-542 (550)
25 2v7b_A Benzoate-coenzyme A lig 100.0 2.9E-77 9.8E-82 676.5 47.8 503 174-718 21-528 (529)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 1.6E-76 5.4E-81 665.4 37.5 473 177-718 22-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 1.8E-75 6.2E-80 657.5 44.5 493 180-722 4-497 (501)
28 3ite_A SIDN siderophore synthe 100.0 1.7E-75 5.9E-80 666.9 33.8 503 180-724 23-545 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 4E-74 1.4E-78 660.1 38.3 505 179-722 13-567 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 1.3E-71 4.4E-76 637.7 41.0 494 178-724 22-565 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 1.3E-58 4.5E-63 517.8 28.3 396 178-611 25-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 3.8E-56 1.3E-60 476.3 25.4 317 356-723 36-355 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.1E-49 7.2E-54 437.2 26.5 325 353-714 81-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 2.3E-48 7.9E-53 429.8 26.3 330 353-715 88-437 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 4.1E-48 1.4E-52 427.0 25.0 328 353-715 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 7.1E-32 2.4E-36 290.4 17.0 238 353-621 87-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 1.6E-15 5.4E-20 131.6 7.1 96 610-713 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 7.3E-15 2.5E-19 127.2 9.2 97 610-714 1-102 (109)
39 4epl_A Jasmonic acid-amido syn 98.8 2.8E-07 9.6E-12 101.5 19.7 162 471-665 301-489 (581)
40 4b2g_A GH3-1 auxin conjugating 98.7 3.5E-07 1.2E-11 101.1 18.8 42 592-633 412-457 (609)
41 4eql_A 4-substituted benzoates 98.7 1.3E-07 4.3E-12 104.6 14.2 133 471-635 296-447 (581)
42 2jgp_A Tyrocidine synthetase 3 98.2 4.6E-08 1.6E-12 109.4 -5.9 129 18-155 375-516 (520)
43 4hvm_A Tlmii; PSI-biology, mid 97.5 2E-06 6.7E-11 95.4 -6.3 131 18-159 300-471 (493)
44 1l5a_A Amide synthase, VIBH; n 97.5 1.2E-06 4.2E-11 95.3 -7.8 119 18-142 279-405 (436)
45 2xhg_A Tyrocidine synthetase A 95.3 0.00051 1.7E-08 75.1 -6.2 118 18-141 310-453 (466)
46 2y27_A Phenylacetate-coenzyme 90.2 2.2 7.6E-05 45.4 12.9 101 189-291 87-191 (437)
47 2y4o_A Phenylacetate-coenzyme 89.6 2.5 8.5E-05 45.1 12.7 100 190-291 90-193 (443)
48 3qov_A Phenylacetate-coenzyme 89.1 2.2 7.6E-05 45.4 11.8 98 192-291 86-187 (436)
49 1q9j_A PAPA5, polyketide synth 83.8 0.023 7.8E-07 60.8 -7.7 100 27-141 297-413 (422)
50 3hgu_A EHPF; phenazine, antibi 74.2 13 0.00044 38.3 10.1 99 190-291 89-214 (369)
51 3rix_A Luciferase, luciferin 4 74.1 8.4 0.00029 42.3 9.1 100 356-460 34-136 (550)
52 3ipl_A 2-succinylbenzoate--COA 71.6 40 0.0014 36.1 13.8 98 189-291 160-260 (501)
53 1v25_A Long-chain-fatty-acid-C 70.5 24 0.00083 38.4 11.8 100 355-460 31-133 (541)
54 3g7s_A Long-chain-fatty-acid-- 70.2 22 0.00076 38.8 11.4 103 355-460 32-138 (549)
55 3ivr_A Putative long-chain-fat 68.6 17 0.00058 39.3 9.9 95 355-459 19-116 (509)
56 1mdb_A 2,3-dihydroxybenzoate-A 67.5 51 0.0017 35.8 13.6 98 189-291 179-281 (539)
57 3o83_A Peptide arylation enzym 66.5 49 0.0017 35.9 13.3 98 189-291 188-290 (544)
58 1t5h_X 4-chlorobenzoyl COA lig 66.2 31 0.0011 37.1 11.4 98 355-460 15-117 (504)
59 3ni2_A 4-coumarate:COA ligase; 66.1 19 0.00063 39.3 9.7 97 355-459 35-134 (536)
60 2d1s_A Luciferase, luciferin 4 65.6 26 0.0009 38.2 10.8 97 192-291 192-292 (548)
61 3t5a_A Long-chain-fatty-acid-- 64.3 41 0.0014 35.7 11.9 105 355-463 37-149 (480)
62 3c5e_A Acyl-coenzyme A synthet 63.4 36 0.0012 37.4 11.4 101 355-460 56-160 (570)
63 3etc_A AMP-binding protein; ad 61.7 33 0.0011 37.8 10.7 95 355-454 69-166 (580)
64 1pg4_A Acetyl-COA synthetase; 61.0 34 0.0012 38.3 10.8 96 355-454 89-187 (652)
65 1ry2_A Acetyl-coenzyme A synth 60.6 41 0.0014 37.7 11.4 97 355-455 95-195 (663)
66 1amu_A GRSA, gramicidin synthe 60.2 38 0.0013 37.1 10.8 96 355-460 52-150 (563)
67 4fuq_A Malonyl COA synthetase; 59.2 36 0.0012 36.6 10.3 80 376-456 28-110 (503)
68 2v7b_A Benzoate-coenzyme A lig 56.3 36 0.0012 36.8 9.8 95 355-459 36-133 (529)
69 3kxw_A Saframycin MX1 syntheta 55.5 72 0.0025 34.9 12.2 101 355-461 24-130 (590)
70 3rg2_A Enterobactin synthase c 54.7 90 0.0031 34.5 12.9 98 189-291 181-283 (617)
71 4gr5_A Non-ribosomal peptide s 54.4 49 0.0017 36.2 10.5 92 355-456 88-182 (570)
72 3fce_A D-alanine--poly(phospho 53.2 40 0.0014 36.3 9.4 99 189-291 141-244 (512)
73 3e7w_A D-alanine--poly(phospho 51.9 69 0.0024 34.4 11.1 99 189-291 140-243 (511)
74 3r44_A Fatty acyl COA syntheta 51.7 50 0.0017 35.6 9.9 95 355-457 29-126 (517)
75 3nyq_A Malonyl-COA ligase; A/B 46.4 1.4E+02 0.005 31.7 12.5 97 189-291 152-252 (505)
76 3tsy_A Fusion protein 4-coumar 44.5 36 0.0012 40.3 7.8 95 355-457 74-171 (979)
77 3ite_A SIDN siderophore synthe 37.4 1.5E+02 0.0053 32.0 11.1 97 355-454 33-134 (562)
78 4h1h_A LMO1638 protein; MCCF-l 36.3 90 0.0031 31.4 8.2 72 231-302 8-98 (327)
79 3l8c_A D-alanine--poly(phospho 36.3 76 0.0026 34.1 8.2 79 375-454 28-109 (521)
80 3gqw_A Fatty acid AMP ligase; 36.0 1.2E+02 0.0042 32.8 10.0 86 374-460 47-142 (576)
81 3tbh_A O-acetyl serine sulfhyd 34.3 1.4E+02 0.0046 30.1 9.2 65 226-290 61-126 (334)
82 4gs5_A Acyl-COA synthetase (AM 32.8 1.2E+02 0.0042 30.6 8.7 93 191-290 36-131 (358)
83 1yj7_A ESCJ; mixed alpha/beta, 32.3 1.3E+02 0.0044 27.0 7.5 72 625-702 92-164 (171)
84 2zbc_A 83AA long hypothetical 32.3 1E+02 0.0035 23.2 6.2 46 625-684 15-60 (83)
85 3ju7_A Putative PLP-dependent 31.3 1.1E+02 0.0037 31.3 8.0 62 225-289 68-136 (377)
86 3ezx_A MMCP 1, monomethylamine 30.3 3.3E+02 0.011 25.2 11.6 93 398-492 92-195 (215)
87 3tla_A MCCF; serine protease, 29.2 1.3E+02 0.0045 30.8 8.0 72 231-302 39-129 (371)
88 3sr3_A Microcin immunity prote 27.9 1.8E+02 0.0061 29.3 8.7 72 231-302 9-99 (336)
89 4e5s_A MCCFLIKE protein (BA_56 27.4 1.7E+02 0.0057 29.4 8.3 72 231-302 8-98 (331)
90 3vc3_A Beta-cyanoalnine syntha 27.0 2.1E+02 0.0071 28.8 9.1 70 221-290 72-141 (344)
91 2cvi_A 75AA long hypothetical 27.0 90 0.0031 23.8 5.0 46 625-684 15-60 (83)
92 4dg8_A PA1221; ANL superfamily 25.4 1.6E+02 0.0054 32.5 8.5 89 355-453 40-131 (620)
93 4eez_A Alcohol dehydrogenase 1 21.9 1.7E+02 0.0058 29.2 7.4 77 210-289 136-215 (348)
94 3ijw_A Aminoglycoside N3-acety 21.2 1.2E+02 0.0041 29.4 5.5 23 221-243 18-40 (268)
95 3ri6_A O-acetylhomoserine sulf 20.8 3.3E+02 0.011 28.3 9.5 57 232-290 118-175 (430)
96 4e4g_A Methylmalonate-semialde 20.7 2.6E+02 0.0088 30.1 8.7 76 400-483 165-250 (521)
97 1o69_A Aminotransferase; struc 20.2 4.1E+02 0.014 26.8 10.0 61 227-290 64-130 (394)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=4e-94 Score=891.80 Aligned_cols=637 Identities=16% Similarity=0.144 Sum_probs=520.2
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCCCCchhheeeeeecCCC-C-CCCCCccCC------
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDF-G-PDPPAWIPD------ 87 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r~~~~~~~~f~~~~~~~-~-~~~~~~~~~------ 87 (729)
+++++..+++.+|.++|++++++.++ +||++||+++++.++ .+|+|++||+.+++.. + .......++
T Consensus 302 lplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~i~~~l~---~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 378 (1304)
T 2vsq_A 302 VPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQAD---QPKLIDHIIVFENYPLQDAKNEESSENGFDMVDV 378 (1304)
T ss_dssp EEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHHHHHSSS---CSSSCCCEEEECSSCHHHHSCCCHHHHSEEEEEE
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHHHHHHhC---CCcccceeEEEeecccccccccccccCCceeEee
Confidence 46777778889999999999999888 999999999999986 6799999999887643 0 000000000
Q ss_pred -hhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCC-CCC
Q 004815 88 -PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGEN-HLS 164 (729)
Q Consensus 88 -~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~ 164 (729)
.....+|||++.+.. ++++...+ |++ ++|++.+++++.++|.++|+++ ...|+..+...++..+ ++.
T Consensus 379 ~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l----~~~p~~~~~~~~~l~~~e~~ 448 (1304)
T 2vsq_A 379 HVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQL----IQNPDQPVSTINLVDDRERE 448 (1304)
T ss_dssp EECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHH----HHSTTSBGGGCCCCCHHHHH
T ss_pred ecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHh----ccCccccccccCCCCHHHHH
Confidence 012467788776543 56677788 988 9999999999999999999997 3445555555444332 222
Q ss_pred CCCCCcCCCCcc---hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEE
Q 004815 165 NPGGQWLPGAFV---NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAID 241 (729)
Q Consensus 165 ~~~~~~~~~~~~---~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~ 241 (729)
..+..|+..... ....++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++|++|+|+
T Consensus 449 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~ 520 (1304)
T 2vsq_A 449 FLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSVVALY 520 (1304)
T ss_dssp HHHTTTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEC
T ss_pred HHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEE
Confidence 334566654322 3456788889999999999999877 99999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCC
Q 004815 242 MPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGS 321 (729)
Q Consensus 242 ~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 321 (729)
++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++ .....++...
T Consensus 521 ~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~---------~~~~~~~~~~-- 589 (1304)
T 2vsq_A 521 TKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP---------YTGTTLFIDD-- 589 (1304)
T ss_dssp CCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC---------CCSEEEESSC--
T ss_pred eCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC---------CCCcEEEecc--
Confidence 99999999999999999999999999999999999999999999999875432111111 0011111100
Q ss_pred CcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEE
Q 004815 322 SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 401 (729)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 401 (729)
... .. .....+.....++++|||+|||||||+||||+++|+++.+. .+....++++++|++
T Consensus 590 ---------~~~-------~~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~ 650 (1304)
T 2vsq_A 590 ---------QTR-------FE--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTF 650 (1304)
T ss_dssp ---------GGG-------GG--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEE
T ss_pred ---------ccc-------cc--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEE
Confidence 000 00 01112233457899999999999999999999999999876 555667899999999
Q ss_pred EEccCcchhhhHHHHHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEe
Q 004815 402 AWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 479 (729)
Q Consensus 402 l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~ 479 (729)
+++++++|+.+.+++|.+|+.|+++++.+.. .++..+.+.|++++||+++++|++++.|.+.. ...+++||.+++
T Consensus 651 l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~ 727 (1304)
T 2vsq_A 651 LSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILF 727 (1304)
T ss_dssp EECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEE
T ss_pred EEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEE
Confidence 9999999999999999999999999998743 47889999999999999999999999998653 223678999999
Q ss_pred ecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcc---cccccccccCCCCCcEEEEEcCCCCccCCCCCceeE
Q 004815 480 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 556 (729)
Q Consensus 480 gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGe 556 (729)
|||++++++.+++.+.+++++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.|++ ||
T Consensus 728 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GE 805 (1304)
T 2vsq_A 728 GGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV--GE 805 (1304)
T ss_dssp ESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCC--EE
T ss_pred ecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCc--eE
Confidence 99999999999988888778999999999999865543322 22345789999999999999999999999997 99
Q ss_pred EEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCC
Q 004815 557 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 636 (729)
Q Consensus 557 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~ 636 (729)
|+|++..+..+ |+++++.|+++|+.+|+.+|.+||||||+|+|++||+|+|+||+|+|||+||+||+|+|||++|. +|
T Consensus 806 l~i~G~~v~~G-Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~-~~ 883 (1304)
T 2vsq_A 806 LCISGMGVSKG-YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQ-EY 883 (1304)
T ss_dssp EEEEETTCCCC-BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHH-HS
T ss_pred EEEeccccCcc-ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHH-hC
Confidence 99977666554 46789999999999998889999999999999999999999999999999999999999999995 99
Q ss_pred CCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHH
Q 004815 637 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 716 (729)
Q Consensus 637 p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L 716 (729)
|+|++|+|++.++..++ +.++||++.+. ..+.+++++ +|+++||.||+|+.|+++++||+|+||||||++|
T Consensus 884 p~V~~a~V~~~~~~~~~-~~l~a~vv~~~----~~~~~~l~~----~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L 954 (1304)
T 2vsq_A 884 PGVKDAVVVADRHESGD-ASINAYLVNRT----QLSAEDVKA----HLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954 (1304)
T ss_dssp SSCCEEEEEEECCSSSC-CEEEEEEECSS----SSCHHHHHH----HHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCC
T ss_pred CCCceEEEEEEecCCCC-EEEEEEEeCCC----CCCHHHHHH----HHHHhChHhhhccEEEEecccCCCCCcccCHhhc
Confidence 99999999999887766 89999999776 356666665 5788999999999999999999999999999999
Q ss_pred HHHHH
Q 004815 717 RKQLA 721 (729)
Q Consensus 717 ~~~~~ 721 (729)
++...
T Consensus 955 ~~~~~ 959 (1304)
T 2vsq_A 955 PKPDQ 959 (1304)
T ss_dssp CCCCG
T ss_pred CCcch
Confidence 76543
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=3.4e-88 Score=782.34 Aligned_cols=581 Identities=26% Similarity=0.402 Sum_probs=477.2
Q ss_pred CHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEEE
Q 004815 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (729)
Q Consensus 118 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~ 197 (729)
+|..+.+++++++++||.++++. +.|.++++++++.... ......+||+++..|.++++|+++++++||++|++
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~ 96 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFA----PGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAII 96 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECC----TTCCEEEESTTCEECHHHHHTGGGHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccc----cCCCCCEECCCCChhHHHHHHHHHhccCCCceEEE
Confidence 46888999999999999999885 6788888888754210 00234689999999999999999998999999999
Q ss_pred EeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHH
Q 004815 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (729)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~ 277 (729)
+.+. ..+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++
T Consensus 97 ~~~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~ 174 (652)
T 1pg4_A 97 WEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGC 174 (652)
T ss_dssp EECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHH
T ss_pred EEcC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Confidence 8543 12234689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecceecCCccccchhhHHhhcC-------CcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccc
Q 004815 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA-------PLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 350 (729)
Q Consensus 278 l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (729)
++++++++||+++.....++.++....+.+.+. ..++++...+..... ......+|.+++.... ...+
T Consensus 175 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~ 249 (652)
T 1pg4_A 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKAS----PEHQ 249 (652)
T ss_dssp HHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSC----SCCC
T ss_pred HHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcC----CCCC
Confidence 999999999999987776666655444433221 234444432211110 0123456777765322 1122
Q ss_pred cccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHH-HHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEE
Q 004815 351 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 428 (729)
Q Consensus 351 ~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl 428 (729)
.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|++++ +.++.+|++|+++++
T Consensus 250 ~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 3345689999999999999999999999999876653 44567899999999999999999998 788999999999999
Q ss_pred eCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccC--CCCe
Q 004815 429 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKPV 501 (729)
Q Consensus 429 ~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~--~~~l 501 (729)
+++. .++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++++++.+.++ ++++
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i 409 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPV 409 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCE
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcE
Confidence 9864 478899999999999999999999999987643 34567899999999999999999999987765 3789
Q ss_pred eecccccccccccccCCc-ccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCC-cccccccccccc
Q 004815 502 IEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGAS-STLLNANHYDVY 579 (729)
Q Consensus 502 ~~~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~-~~~~~~~~~~~~ 579 (729)
+|.||+||+++.++.... ..+...+++|+|++|++++|+|++|+++|.|+. |||+|++.+.+.. .|+++++.+...
T Consensus 410 ~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~ 487 (652)
T 1pg4_A 410 VDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQT 487 (652)
T ss_dssp EEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHH
T ss_pred EccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhh
Confidence 999999999876555433 223456899999999999999999999999986 9999966322211 235566655444
Q ss_pred cccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEE
Q 004815 580 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 659 (729)
Q Consensus 580 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a 659 (729)
|... .+| ||+|||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++|
T Consensus 488 ~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a 561 (652)
T 1pg4_A 488 YFST--FKN--MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYA 561 (652)
T ss_dssp HHSS--STT--SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hhhc--CCC--EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEE
Confidence 3221 123 9999999999999999999999999999999999999999995 9999999999999988777 89999
Q ss_pred EEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 660 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 660 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
||++++ +. . ..+++.+.|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.+
T Consensus 562 ~Vv~~~-~~-~-~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 562 YVTLNH-GE-E-PSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp EEEECT-TC-C-CCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEECC-CC-C-CCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 999987 54 2 234567778888999999999999999999999999999999999999875
No 3
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.9e-88 Score=780.67 Aligned_cols=592 Identities=24% Similarity=0.378 Sum_probs=476.7
Q ss_pred CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCC
Q 004815 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSL 191 (729)
Q Consensus 112 y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 191 (729)
++..+.+|..++++++++++.||.++++.. +.|.++++++++.... .........+||.++..|.++++|+++++++|
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~p 96 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPK-TGRPSFQNNAWFLNGQLNACYNCVDRHALKTP 96 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSS-SCSBCSTTCCBSTTCEECHHHHHTHHHHTTCT
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccc-cccCCCCCCCcCCCCCccHHHHHHHHHhccCC
Confidence 556667889999999999999999999862 5899999988865410 00001223689999999999999999999999
Q ss_pred CCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCC
Q 004815 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270 (729)
Q Consensus 192 d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~ 270 (729)
|++|+++.+. ..+..+++||+||+++++++|+.|+ ++||++||+|+|+++|++++++++|||+++|++++|++|.++
T Consensus 97 d~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~ 174 (663)
T 1ry2_A 97 NKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174 (663)
T ss_dssp TSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSC
T ss_pred CceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 9999998643 1233468999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhc---C--CcEEEEcCCCC-CcccccCCCCcCHHHHHHHhhcc
Q 004815 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQ---A--PLAIVIPAKGS-SFSMKLRDGDISWLDFLERVRKL 344 (729)
Q Consensus 271 ~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 344 (729)
.+++.++++++++++||+++...+.++.++....+.+.+ + ..++++..... .... ......+|.++.....
T Consensus 175 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 251 (663)
T 1ry2_A 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAF-HAPRDLDWATEKKKYK-- 251 (663)
T ss_dssp HHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCCC-CSSSEEEHHHHHTTSC--
T ss_pred HHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCcccc-CCCccccHHHHHhhcC--
Confidence 999999999999999999998777666666554444332 2 23444443221 1100 1123456777664321
Q ss_pred ccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHH-HHHhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhc
Q 004815 345 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLN 422 (729)
Q Consensus 345 ~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~ 422 (729)
...+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|++++ +.++++|+.
T Consensus 252 --~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~ 329 (663)
T 1ry2_A 252 --TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLY 329 (663)
T ss_dssp --SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHH
T ss_pred --CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHh
Confidence 12233455689999999999999999999999999876654 44567899999999999999999998 788999999
Q ss_pred CceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC--CCCCCCCCccEEEeecCCCCHhHHHHHHhccC
Q 004815 423 GASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (729)
Q Consensus 423 G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~--~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 497 (729)
|++++++++. +++..++++|++++||+++++|++++.|.+... ....++++||.+++|||++++++++++.+.++
T Consensus 330 G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g 409 (663)
T 1ry2_A 330 GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIG 409 (663)
T ss_dssp TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999864 477899999999999999999999999987654 34567899999999999999999999988765
Q ss_pred --CCCeeecccccccccccccCCc--ccccccccccCCCCCcEEEEEcC-CCCccCC-CCCceeEEEeeccccCCC-ccc
Q 004815 498 --YKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQ-NVPGMGELALSPLIFGAS-STL 570 (729)
Q Consensus 498 --~~~l~~~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~-g~~giGel~v~~~~~~~~-~~~ 570 (729)
+++++|.||+||+++.++.... ..+...+++|+|++|++++|+|+ +|++++. |+. |||+|.+...+.. .|+
T Consensus 410 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~gy~ 487 (663)
T 1ry2_A 410 KNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFARTIW 487 (663)
T ss_dssp CSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCEET
T ss_pred CCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcccc
Confidence 4789999999999876555433 23456689999999999999999 8999988 875 9999965322211 245
Q ss_pred ccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 571 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 571 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++++.+.+.|... .+| ||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++
T Consensus 488 ~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 488 KNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDD 562 (663)
T ss_dssp TCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCC
T ss_pred cChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecC
Confidence 6666665544321 124 9999999999999999999999999999999999999999995 9999999999999988
Q ss_pred CCCceeEEEEEEecCCCCCC---CChH---HHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 651 DGGPEQLTIVVVFKDSNYTP---PDLN---QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~---~~~~---~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
..| +.++|||++++ +. . ...+ ++.+.|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.+
T Consensus 563 ~~g-~~~~a~Vv~~~-~~-~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 563 LTG-QAVAAFVVLKN-KS-SWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp TTS-CCCEEEEEEC--------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred CCC-eEEEEEEEEcC-CC-ccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 777 88999999987 43 1 1011 467778888999999999999999999999999999999999998765
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=1e-82 Score=726.59 Aligned_cols=523 Identities=20% Similarity=0.251 Sum_probs=416.0
Q ss_pred CCcCCCCcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Q 004815 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (729)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (729)
..|......|.+.++|+++++++||++|+++.+. .+..+++||+||+++++++|++|+++|+++||+|+|+++|+++
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e 123 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYARDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD 123 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHHHHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH
T ss_pred CCCCCcccchHHHHHHHHHHhhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence 3466667789999999999999999999998654 2344689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC---CcEEEEcCCCCCcc
Q 004815 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVIPAKGSSFS 324 (729)
Q Consensus 248 ~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~ 324 (729)
+++++|||+|+|+++||++|.++.+++.+++++++++++|++.... .......+...++ ...+.+...
T Consensus 124 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----- 194 (580)
T 3etc_A 124 FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD----- 194 (580)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS-----
T ss_pred HHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc-----
Confidence 9999999999999999999999999999999999999999987521 0122223333332 233333221
Q ss_pred cccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEc
Q 004815 325 MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWP 404 (729)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 404 (729)
...+...+.+.+.................++++|||+|||||||.||||+++|.+++..+......+++.+++++++.
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (580)
T 3etc_A 195 --VLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTV 272 (580)
T ss_dssp --CCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEEC
T ss_pred --cccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 112345566665543321111111134678999999999999999999999999998888777777899999999999
Q ss_pred cCcchhhhHHH-HHHHhhcCceEEEeC-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecC
Q 004815 405 TNLGWMMGPWL-VYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 482 (729)
Q Consensus 405 ~~~~~~~~~~~-i~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe 482 (729)
++++|+.+.+. ++.++..|+++++.+ ...++..+++.|+++++|+++++|++++.|++.. ....++++||.+++|||
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe 351 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGE 351 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSS
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccC
Confidence 99999999864 788999999999985 4568889999999999999999999999998763 34567899999999999
Q ss_pred CCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeec-
Q 004815 483 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSP- 561 (729)
Q Consensus 483 ~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~- 561 (729)
++++++.+++.+.++ ++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+. |||+|.+
T Consensus 352 ~l~~~~~~~~~~~~g-~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~~~ 427 (580)
T 3etc_A 352 PLNPEVFNRFLEFTG-IKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVINTM 427 (580)
T ss_dssp CCCHHHHHHHHHHHS-CCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEECT
T ss_pred CCCHHHHHHHHHHhC-CeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEecC
Confidence 999999999987664 89999999999987554433 334566899999999999999999999999997 9999963
Q ss_pred ----cccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCC
Q 004815 562 ----LIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDS 637 (729)
Q Consensus 562 ----~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p 637 (729)
..+. ..|+++++.|++.|.. | ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||
T Consensus 428 ~g~~~~~~-~gY~~~p~~t~~~f~~-----g--wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p 498 (580)
T 3etc_A 428 EGKPVGLF-VHYGKDPERTEETWHD-----G--YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHP 498 (580)
T ss_dssp TCCCTTCC-CEETTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT-TST
T ss_pred CCCCCeee-ccccCCHhHHHhhcCC-----C--EEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCC
Confidence 1121 1256788888888852 3 9999999999999999999999999999999999999999995 999
Q ss_pred CeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHH
Q 004815 638 NVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLR 717 (729)
Q Consensus 638 ~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~ 717 (729)
+|.+|+|++++++..| +.++|+|++++ +. ...+++.+.|+++++++||+||+|..|+++++||+|+||||+|++|+
T Consensus 499 ~V~~a~Vvg~~~~~~g-~~~~a~vv~~~-~~--~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr 574 (580)
T 3etc_A 499 AVLECAITGVPDPVRG-QVIKATIVLTK-DY--TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIR 574 (580)
T ss_dssp TEEEEEEEEEEETTTE-EEEEEEEEECT-TC--CCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC---------------
T ss_pred CeeeEEEEeeeccCCC-cEEEEEEEECC-CC--CCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHH
Confidence 9999999999998887 89999999987 54 23456777888899999999999999999999999999999999999
Q ss_pred HHHHh
Q 004815 718 KQLAQ 722 (729)
Q Consensus 718 ~~~~~ 722 (729)
++..+
T Consensus 575 ~~~~~ 579 (580)
T 3etc_A 575 DKDQS 579 (580)
T ss_dssp -----
T ss_pred hHhhc
Confidence 98653
No 5
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.8e-82 Score=726.97 Aligned_cols=479 Identities=18% Similarity=0.145 Sum_probs=398.7
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailk 99 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILL 99 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 456788899999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|++|||+||.+|.+++.+++++++++++++++.........+ ...+..
T Consensus 100 aGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~------------~~~~~~------------------- 148 (620)
T 4dg8_A 100 SGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP------------CVPVRH------------------- 148 (620)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSC------------EEEGGG-------------------
T ss_pred hCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCc------------eeeecc-------------------
Confidence 9999999999999999999999999999997664221100000 000000
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
.. ............++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+++++++|
T Consensus 149 ---~~-~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 223 (620)
T 4dg8_A 149 ---LP-AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIW 223 (620)
T ss_dssp ---CC-CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHH
T ss_pred ---CC-cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHH
Confidence 00 001111223346899999999999999999999999999887765 4568899999999999999999999999
Q ss_pred HHhhcCceEEEeC-CCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 418 ASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 418 ~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
.+|+.|+++++.+ ...++..++++|+++++|++.++|++++.|.+.. ..++++||.+++|||+++++..+++...+
T Consensus 224 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~ 300 (620)
T 4dg8_A 224 GALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRH 300 (620)
T ss_dssp HHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhC
Confidence 9999999999975 3458889999999999999999999999998753 34578999999999999999988888777
Q ss_pred CCCCeeecccccccccccccCCc---ccccccccccCCCCCcEEEEEcCCCCc-cCCCCCceeEEEeeccccCCCccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSL---LQAQSLAAFSTPAMGCKLFILGNDGCP-IPQNVPGMGELALSPLIFGASSTLLN 572 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~v~d~~g~~-~p~g~~giGel~v~~~~~~~~~~~~~ 572 (729)
++++++|.||+||++++++.... .......++|+|++|++++|+|+++++ +|.|++ |||+|++..+..+ |+++
T Consensus 301 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~G-Y~~~ 377 (620)
T 4dg8_A 301 PRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQG-YRND 377 (620)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSE-ETTC
T ss_pred CCeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccc-cCCC
Confidence 78899999999999976543322 222345789999999999999999988 799997 9999976665543 4678
Q ss_pred ccccccccccccCCCCc--eeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 573 ANHYDVYFSGMPSRNGQ--ILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 573 ~~~~~~~f~~~p~~~g~--~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++.|+++|..+|. .|. +||||||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++
T Consensus 378 p~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~ 455 (620)
T 4dg8_A 378 AARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERN 455 (620)
T ss_dssp HHHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEET
T ss_pred hhhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCC
Confidence 8999999998884 344 89999999999999999999999999999999999999999995 9999999999998876
Q ss_pred CCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 651 DGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
.. ..++++++... . .. ++ .|+++||.||+|+.|+++++||+|+||||||++|++++.+
T Consensus 456 ~~--~~lv~~~~~~~-~---~~----~~----~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 456 GV--KQLLCAWTGKA-D---AS----PQ----ALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp TE--EEEEEEEEECT-T---CC----CH----HHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred Cc--eEEEEEEecCh-H---HH----HH----HHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 43 46666666543 1 12 22 3667899999999999999999999999999999987654
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.8e-81 Score=709.95 Aligned_cols=503 Identities=18% Similarity=0.217 Sum_probs=421.9
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|.++++++||++|+++...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 23 ~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~ 96 (536)
T 3ni2_A 23 PLHSYVLENLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASH 96 (536)
T ss_dssp CHHHHHTTTGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 3567788899999999999986321 2899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|++++|++|.++.+++.+++++++++++|+++... .............++.+... ..+...+.++
T Consensus 97 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 162 (536)
T 3ni2_A 97 RGAIITAANPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSEL 162 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHH
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHH
Confidence 999999999999999999999999999999987532 22222222222233332211 1233445555
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh----hCCCCCCCEEEEccCcchhhhH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~ 413 (729)
...... ..+.....++++|||+|||||||.||||+++|+++++.+.+... .+++.++|++++.+|++|++++
T Consensus 163 ~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~ 238 (536)
T 3ni2_A 163 TQADEN----EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYAL 238 (536)
T ss_dssp HTSCGG----GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHH
T ss_pred hhcccc----ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHH
Confidence 443221 22334567899999999999999999999999999888776543 4578899999999999999998
Q ss_pred -HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHH
Q 004815 414 -WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWL 492 (729)
Q Consensus 414 -~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~ 492 (729)
..++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++
T Consensus 239 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~ 317 (536)
T 3ni2_A 239 NSIMLCGLRVGAPILIMPK-FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTV 317 (536)
T ss_dssp HHTHHHHHHHTCCEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEcCC-CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHH
Confidence 567899999999999864 678899999999999999999999999998876667789999999999999999999999
Q ss_pred HhccCCCCeeecccccccccccccCC----cccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCC
Q 004815 493 MGRALYKPVIEYCGGTEIGGGFITGS----LLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGAS 567 (729)
Q Consensus 493 ~~~~~~~~l~~~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~ 567 (729)
++.+++++++|.||+||++..++... .......+++|+|++|++++|+| ++|+++|.|++ |||+|++..+..+
T Consensus 318 ~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G 395 (536)
T 3ni2_A 318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKG 395 (536)
T ss_dssp HHHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE
T ss_pred HHHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchh
Confidence 98888899999999999986544332 12233567899999999999999 56999999997 9999976655543
Q ss_pred cccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEee
Q 004815 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 647 (729)
Q Consensus 568 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~ 647 (729)
|+++++.|++.|..+ +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|+++
T Consensus 396 -Y~~~p~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~ 467 (536)
T 3ni2_A 396 -YLNDPEATSRTIDKE------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGL 467 (536)
T ss_dssp -ETTCHHHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEE
T ss_pred -hcCChhHHHhhccCC------CceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEee
Confidence 467888888888532 39999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 648 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 648 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+++..| +.++|||+..+ +. ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++++++
T Consensus 468 ~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 468 KDEDAG-EVPVAFVVKSE-KS-QATEDEIKQ----YISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp EETTTE-EEEEEEEEECT-TC-CCCHHHHHH----HHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred ecCCCC-ceeEEEEEecC-CC-CCCHHHHHH----HHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 988887 88999999887 54 456666665 5788999999999999999999999999999999998765
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=5.4e-82 Score=717.95 Aligned_cols=516 Identities=18% Similarity=0.199 Sum_probs=390.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|+++++++||++|+++.+.....+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 21 l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 100 (549)
T 3g7s_A 21 LADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRV 100 (549)
T ss_dssp TTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 45678888899999999999874322334459999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|+++||+||.++.+++.+++++++++++|+++... .....+........+++.. .....+.++.
T Consensus 101 G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~ 164 (549)
T 3g7s_A 101 AATPVPINPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVM 164 (549)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHH
T ss_pred CCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHH
Confidence 99999999999999999999999999999997532 2222222222222222221 1234566665
Q ss_pred HHhhccccCccccccCCC-CCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 339 ERVRKLKENEFAAVEQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~-~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
..... ........+ +++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++
T Consensus 165 ~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~ 240 (549)
T 3g7s_A 165 DSGSE----DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVN 240 (549)
T ss_dssp HHSCS----CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHT
T ss_pred hcCcc----ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHH
Confidence 54321 122223334 8999999999999999999999999999998888889999999999999999999987788
Q ss_pred HHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCC--CCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 418 ASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 418 ~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~--~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|++..... ..++++||.+++||+++++++.+++.+.
T Consensus 241 ~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~ 319 (549)
T 3g7s_A 241 LMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKL 319 (549)
T ss_dssp THHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHH
T ss_pred HHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHH
Confidence 9999999999987 468889999999999999999999999998764322 2568999999999999999999988766
Q ss_pred ----cC--CCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCc
Q 004815 496 ----AL--YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 496 ----~~--~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
++ +++++|.||+||++++++...........++|+|++|++++|+| ++|+++|.|+. |||+|++..+..+
T Consensus 320 ~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G- 396 (549)
T 3g7s_A 320 AAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKG- 396 (549)
T ss_dssp HHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSE-
T ss_pred HHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhh-
Confidence 33 37899999999999876666554445678999999999999999 88999999997 9999976655443
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.|++.|..++ +|.+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 397 Y~~~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~ 473 (549)
T 3g7s_A 397 YWKREKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKP 473 (549)
T ss_dssp ETTCTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCC
T ss_pred hCCChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeE
Confidence 4678899999886443 47789999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceeEEEEEEecCCCC-CCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhhcC
Q 004815 649 PPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 727 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~~~ 727 (729)
++..| +.++|+|++++ +. ...+.+++++ +|+++||.||+|..|+++++||+|+||||||++|+++..+-++++
T Consensus 474 ~~~~g-~~~~a~vv~~~-~~~~~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 474 DEEAG-EVPKAFIVLKP-EYRGKVDEEDIIE----WVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHH 547 (549)
T ss_dssp C-------CEEEEEECS-TTTTSCCHHHHHH----HHHTTCC-----CCCCEEEECC-----------------------
T ss_pred ccccC-ceEEEEEEECC-CccCcCCHHHHHH----HHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccccc
Confidence 88877 88999999987 41 1355566655 688899999999999999999999999999999999988755443
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.3e-80 Score=698.57 Aligned_cols=496 Identities=20% Similarity=0.190 Sum_probs=415.0
Q ss_pred hhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC
Q 004815 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (729)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa 260 (729)
++|+++++++||++|++.....+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhCCCCceEEEecCCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 46778888999999988633211 3899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHH
Q 004815 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 340 (729)
Q Consensus 261 ~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 340 (729)
++||+||.++.+++.+++++++++++|+++... .....+.......+..+... ....+.+....
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~ 142 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKR------DGIAAIAAKVGATVETLGPD----------GRGSLTDAAAG 142 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGT------TTTHHHHHHHTCEEEECCTT----------SCSHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhh------HHHHHHHhhcCceEEEecCC----------cccccchhhhc
Confidence 999999999999999999999999999987532 22233333333322222111 11112221111
Q ss_pred hhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-HHHHHH
Q 004815 341 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYAS 419 (729)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~ 419 (729)
...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++ ..++.+
T Consensus 143 ----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~ 218 (503)
T 4fuq_A 143 ----ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVT 218 (503)
T ss_dssp ----SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHH
T ss_pred ----CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHH
Confidence 112223345678999999999999999999999999999999998899999999999999999999987 457789
Q ss_pred hhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCC
Q 004815 420 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 499 (729)
Q Consensus 420 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~ 499 (729)
++.|+++++.+. .++..+++.++ ++|++.++|+++..|++.......++++||.+++||+++++++.+++...++ .
T Consensus 219 l~~g~~~~~~~~-~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~ 294 (503)
T 4fuq_A 219 LFARGSMIFLPK-FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-H 294 (503)
T ss_dssp HHTTCEEEECSS-CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-C
T ss_pred HHhCCEEEEcCC-CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-C
Confidence 999999999874 68888999997 8999999999999999887666677899999999999999999999887765 7
Q ss_pred CeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 500 PVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 500 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
+++|.||+||+++.++ .........+++|+|++|++++|+| ++|+++|.|+. |||+|++..+..+ |+++++.|++
T Consensus 295 ~~~~~YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~~t~~ 370 (503)
T 4fuq_A 295 AVLERYGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKG-YWRMPEKTKS 370 (503)
T ss_dssp CEEECCEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCC-BTTCHHHHHH
T ss_pred CccceEcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhh-hcCChhhhHh
Confidence 8999999999987643 3333344567899999999999999 78999999997 9999976655543 4678888998
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
.|..++ ||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..+ +.++
T Consensus 371 ~f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 442 (503)
T 4fuq_A 371 EFRDDG------FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVT 442 (503)
T ss_dssp TBCTTS------CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred hhCCCC------CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeE
Confidence 887433 9999999999999999999999999999999999999999995 9999999999999998877 8899
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 659 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
|+|+.++ +. ..+.+++++ +++++||.||+|..|+++++||+|+||||||++|++++.++
T Consensus 443 a~v~~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 443 AVVVRDK-GA-TIDEAQVLH----GLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEEECT-TC-CCCHHHHHH----HHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEEeCC-CC-CCCHHHHHH----HHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 9999887 54 466666655 58889999999999999999999999999999999998764
No 9
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=4.9e-80 Score=695.88 Aligned_cols=497 Identities=17% Similarity=0.143 Sum_probs=425.8
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
.++|.++++++||++|+++.++ ++||+||+++++++|++|+++ |+++|++|+++++|++++++++|||+++
T Consensus 4 ~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 4 LHAIQTHAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 3567888999999999999776 999999999999999999885 8899999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|++++|++|.++.+++.+++++++++++|+++...... .. .......+.++.
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~------------~~----------------~~~~~~~~~~~~ 127 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA------------VG----------------QQIQTVSAEELL 127 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC------------CC----------------CSSCEEEHHHHH
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh------------cc----------------cccceecHhhhh
Confidence 99999999999999999999999999999976421000 00 001123344443
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~ 418 (729)
..... .........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.
T Consensus 128 ~~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 204 (511)
T 3e7w_A 128 ENEGG---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYP 204 (511)
T ss_dssp TSCSC---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHH
T ss_pred ccccC---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHH
Confidence 32211 112233457899999999999999999999999999999999888999999999999999999999999999
Q ss_pred HhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 419 SLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 419 ~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
+|..|+++++.+.. .++..+++.|+++++|++.++|+++..++.........++++|.+++||+++++++.+++.+.+
T Consensus 205 ~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~ 284 (511)
T 3e7w_A 205 CLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERF 284 (511)
T ss_dssp HHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHC
T ss_pred HHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHC
Confidence 99999999998643 3678899999999999999999999999987766667789999999999999999999999988
Q ss_pred CCCCeeecccccccccccccCCcc----cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 572 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~ 572 (729)
++++++|.||+||+++.++..... ......++|+|++|++++|+|++|+++|.|++ |||+|.+..+..+ |+++
T Consensus 285 ~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~ 361 (511)
T 3e7w_A 285 PKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRG-YLGE 361 (511)
T ss_dssp TTCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCC-BTTC
T ss_pred CCcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChh-hCCC
Confidence 889999999999998765543221 12345679999999999999999999999997 9999976655443 4678
Q ss_pred ccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004815 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652 (729)
Q Consensus 573 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~ 652 (729)
++.|++.|...+ |.+||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 362 ~~~t~~~f~~~~---g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 436 (511)
T 3e7w_A 362 PELTEKAFFSHE---GQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGT 436 (511)
T ss_dssp HHHHHHHEEESS---SSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSS
T ss_pred cccchhhhcCCC---CCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCC
Confidence 888988886533 6678999999999 59999999999999999999999999999995 899999999999988777
Q ss_pred CceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhhc
Q 004815 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 726 (729)
Q Consensus 653 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~~ 726 (729)
+ +.++|+|++++ +. ..+..++.+.|+++++++||.||+|..|+++++||+|+||||||++|++++.+...+
T Consensus 437 ~-~~~~a~vv~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 507 (511)
T 3e7w_A 437 V-EYLIAAIVPEE-HE-FEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRSHH 507 (511)
T ss_dssp C-CEEEEEEEECC-CC-CSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHHTC
T ss_pred c-eEEEEEEEecc-cc-ccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhccc
Confidence 7 88999999887 44 345566778888899999999999999999999999999999999999999875443
No 10
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=9.6e-80 Score=708.57 Aligned_cols=499 Identities=17% Similarity=0.202 Sum_probs=414.5
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++ ||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+|+
T Consensus 29 l~~~~~~~a~--pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 29 LTDILTRHAA--SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp TTHHHHTTTT--CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 4567888876 99999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++|||++|.+|.+++.++++++++++++++........ ......+...... ..+.+... .....+.+.
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 168 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSG-DDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDA 168 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSS-SHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHH
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEeccccccccc-HHHHHHHhhcCCccceeeeccc---------ccccchhhh
Confidence 999999999999999999999999999999975321000 0111222222222 22222111 112233333
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH--HH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP--WL 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~ 415 (729)
..... .........++++|||+|||||||+||||+++|+++++.+.+....++++++|++++.+|++|.++. ++
T Consensus 169 ~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 244 (617)
T 3rg2_A 169 INHPA----EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPG 244 (617)
T ss_dssp HHSCC----SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hcccc----cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHH
Confidence 32211 1223345578999999999999999999999999999999999889999999999999998777665 47
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC--CCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~--~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++.
T Consensus 245 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 323 (617)
T 3rg2_A 245 SLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP 323 (617)
T ss_dssp HHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHH
Confidence 9999999999999865 5778899999999999999999999998775322 233689999999999999999999988
Q ss_pred hccCCCCeeecccccccccccccCCcccccccccccCCC-CCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 572 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~ 572 (729)
..+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++|+++|.|++ |||+|++..+..+ |+++
T Consensus 324 ~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~G-Y~~~ 399 (617)
T 3rg2_A 324 AEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRG-YYKS 399 (617)
T ss_dssp HHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSC-CTTC
T ss_pred HHh-CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccch-hcCC
Confidence 776 48999999999998765544333333456899997 78899999999999999997 9999977766544 4678
Q ss_pred ccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004815 573 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 652 (729)
Q Consensus 573 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~ 652 (729)
++.|+++|..++ ||||||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 400 p~~t~~~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~ 472 (617)
T 3rg2_A 400 PQHNASAFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELM 472 (617)
T ss_dssp HHHHHHHBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTT
T ss_pred hhhhhhccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCccc
Confidence 899999997554 9999999999999999999999999999999999999999995 999999999999988877
Q ss_pred CceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 653 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 653 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+ +.++||++..+ ..+..+++++ +++ .||.||+|+.|+++++||+|+||||||++|++++.+
T Consensus 473 ~-~~~~a~vv~~~----~~~~~~l~~~----l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 473 G-EKSCAYLVVKE----PLRAVQVRRF----LREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp E-EEEEEEEEESS----CCCHHHHHHH----HHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred C-eeEEEEEEeCC----CCCHHHHHHH----HHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 7 88999999887 4566776664 666 699999999999999999999999999999998765
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.6e-80 Score=698.60 Aligned_cols=498 Identities=16% Similarity=0.180 Sum_probs=419.8
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 4 LEQIEKWAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 3567888899999999999877 99999999999999999999999999999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 339 (729)
+++||++|.++.+++.+++++++++++|++....... .. ..++. ...+.++..
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~--~~~~~-------------~~~~~~~~~ 128 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD------------LP--VRIVS-------------EDNLKDIFF 128 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CS--SEEEE-------------THHHHHHHH
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc------------cc--cceec-------------hhhhhhhcc
Confidence 9999999999999999999999999999986421100 00 00000 011222222
Q ss_pred HhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHH
Q 004815 340 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~ 419 (729)
... .....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+
T Consensus 129 ~~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 206 (512)
T 3fce_A 129 THK--GNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPS 206 (512)
T ss_dssp HTT--TCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHH
T ss_pred ccc--ccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHH
Confidence 111 111223345678999999999999999999999999999999998889999999999999999999999999999
Q ss_pred hhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccC
Q 004815 420 LLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 497 (729)
Q Consensus 420 L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~ 497 (729)
++.|+++++.+.. .++..+++.|+++++|++.++|+++..++........++++||.+++||+++++++.+++.+.++
T Consensus 207 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~ 286 (512)
T 3fce_A 207 LVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFP 286 (512)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred HhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCC
Confidence 9999999998753 36788999999999999999999999998876666677899999999999999999999999888
Q ss_pred CCCeeecccccccccccccCCcc----cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 498 YKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 498 ~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
+++++|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+|.+..+..+ |++++
T Consensus 287 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~ 363 (512)
T 3fce_A 287 KATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVG-YLGSP 363 (512)
T ss_dssp TCEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSC-BTTCH
T ss_pred CCEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChh-hcCCc
Confidence 89999999999998765443321 12245689999999999999999999999997 9999976655443 46788
Q ss_pred cccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 574 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
+.|++.|... +|++||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|+++++...+
T Consensus 364 ~~t~~~f~~~---~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~ 438 (512)
T 3fce_A 364 ELTEKAFTMI---DGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY 438 (512)
T ss_dssp HHHHHHEEEE---TTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE
T ss_pred hhhhhccccC---CCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc
Confidence 8888888632 36779999999999 79999999999999999999999999999995 9999999999999887776
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhh
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 725 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~ 725 (729)
+.++|+|++.+ +. ..+..++.+.++++|+++||.||+|..|+++++||+|++|||||++|++.+.+..+
T Consensus 439 -~~~~a~vv~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 439 -DYLLAVVVPGE-HS-FEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp -EEEEEEEEECS-CC-CSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred -eEEEEEEecCC-cc-ccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence 88999999887 43 34555677788889999999999999999999999999999999999999987544
No 12
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=3.4e-79 Score=696.56 Aligned_cols=522 Identities=21% Similarity=0.268 Sum_probs=427.5
Q ss_pred CCCcCCCCcchHHhhhhccccCC-----CCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEE
Q 004815 167 GGQWLPGAFVNPAKNCLSVNSKR-----SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAI 240 (729)
Q Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~-----~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai 240 (729)
+..|+.....|...++|++++++ +||++|+++.+. .+..+++||+||+++++++|++|+++ |+++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~---~g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNG---KGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECS---SSCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcC---CCceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 45677677778888889888877 999999998542 11234899999999999999999999 9999999999
Q ss_pred ECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcC
Q 004815 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPA 318 (729)
Q Consensus 241 ~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~ 318 (729)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|+++... +....+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 122222222222 2333321
Q ss_pred CCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHH--HHHHHHhhCCCC
Q 004815 319 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK--AAADAWCHMDIR 396 (729)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~--~~~~~~~~~~~~ 396 (729)
.. ..+...+.+++..... ..+.....++++|||+|||||||.||||+++|+ ++. ...+. ..++++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~~~~ 245 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWTGLQ 245 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTTSCC
T ss_pred cC-------ccccccHHHHhhcccc----cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhcCCC
Confidence 11 1123456666543221 122234568999999999999999999999999 444 44444 678899
Q ss_pred CCCEEEEccCcchhhhHH-HHHHHhhcCceEEEeCC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCc
Q 004815 397 KADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSI 474 (729)
Q Consensus 397 ~~d~~l~~~~~~~~~~~~-~i~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sL 474 (729)
++|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|.+.. ....++++|
T Consensus 246 ~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~l 324 (570)
T 3c5e_A 246 ASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHL 324 (570)
T ss_dssp TTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTC
T ss_pred CCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccc
Confidence 999999999999999985 68899999999999874 468889999999999999999999999998763 334568899
Q ss_pred cEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCce
Q 004815 475 RCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGM 554 (729)
Q Consensus 475 r~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~gi 554 (729)
|.+++|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+.
T Consensus 325 r~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~-- 400 (570)
T 3c5e_A 325 QNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE-- 400 (570)
T ss_dssp CEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC--
T ss_pred eEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC--
Confidence 9999999999999999988776 488999999999986554432 223456789999999999999999999999997
Q ss_pred eEEEee-----ccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHH
Q 004815 555 GELALS-----PLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIE 629 (729)
Q Consensus 555 Gel~v~-----~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE 629 (729)
|||+|. +..+.. .|+++++.|++.|.. +||+|||+|++++||+++|+||+|||||++|+||+|.|||
T Consensus 401 GEl~v~~~~~~g~~v~~-GY~~~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE 472 (570)
T 3c5e_A 401 GDIGIRVKPIRPIGIFS-GYVDNPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVE 472 (570)
T ss_dssp EEEEEECSSBCCTTCCC-EETTCHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHH
T ss_pred CeeEEeccCCCCchhhc-cccCChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHH
Confidence 999996 333322 246788888888852 3999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCC
Q 004815 630 RICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATN 709 (729)
Q Consensus 630 ~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 709 (729)
++|. +||+|.+|+|++.+++..| +.++|||++.+ +....+.+.+.+.|+++|+++||+||+|..|+++++||+|+||
T Consensus 473 ~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~G 549 (570)
T 3c5e_A 473 NALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLAS-QFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTG 549 (570)
T ss_dssp HHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECG-GGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTC
T ss_pred HHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECC-cccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCc
Confidence 9995 9999999999999988777 88999999876 3211344567778888999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhhhhc
Q 004815 710 KVMRRVLRKQLAQLDQN 726 (729)
Q Consensus 710 KidR~~L~~~~~~~~~~ 726 (729)
||+|++|++.+...+.+
T Consensus 550 Ki~R~~L~~~~~~~s~~ 566 (570)
T 3c5e_A 550 KIQRAKLRDKEWKMSGK 566 (570)
T ss_dssp CBCHHHHHHHHTC----
T ss_pred CCcHHHHHHHHHhhhhc
Confidence 99999999998776544
No 13
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=7e-80 Score=701.17 Aligned_cols=482 Identities=19% Similarity=0.201 Sum_probs=404.3
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 40 ~l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 40 TIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 356778888999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC--CcEEEEcCCCCCcccccCCCCcCHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+|+++||++|.++.+++.+++++++++++|+++.... ...... ..+..+.. . . +
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~----------~~~~~~~~~~~~~~~~--~---------~--~- 167 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH----------LIHNIQFNGQVEIFEE--D---------T--I- 167 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH----------HHTTSCCCSEEEECCC--S---------T--T-
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh----------hhhhccccCceeeecc--h---------h--h-
Confidence 9999999999999999999999999999999874321 111111 11111110 0 0 0
Q ss_pred HHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHH
Q 004815 336 DFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWL 415 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~ 415 (729)
.. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.
T Consensus 168 ---~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~ 240 (563)
T 1amu_A 168 ---KI----REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWE 240 (563)
T ss_dssp ---TT----SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHH
T ss_pred ---cc----ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHH
Confidence 00 00011123446789999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHH
Q 004815 416 VYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 493 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~ 493 (729)
++.+|+.|+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++||+++++++.+++.
T Consensus 241 ~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~ 314 (563)
T 1amu_A 241 MFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWK 314 (563)
T ss_dssp HHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHT
T ss_pred HHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHH
Confidence 99999999999998643 4678899999999999999999999877432 368899999999999999999887
Q ss_pred hccCCCCeeecccccccccccccCCcc--cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccc
Q 004815 494 GRALYKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 571 (729)
Q Consensus 494 ~~~~~~~l~~~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~ 571 (729)
+. ++++|.||+||++++++..... ......++|+|++|++++|+|++|+++|.|+. |||+|++..+..+ |++
T Consensus 315 ~~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~ 388 (563)
T 1amu_A 315 EK---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARG-YWK 388 (563)
T ss_dssp TT---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCE-ETT
T ss_pred hC---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChh-hCC
Confidence 53 6899999999998755443221 12345689999999999999999999999996 9999966554433 467
Q ss_pred cccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004815 572 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 651 (729)
Q Consensus 572 ~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 651 (729)
+++.|++.|..+|+.+|++||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++.
T Consensus 389 ~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~ 467 (563)
T 1amu_A 389 RPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQ 467 (563)
T ss_dssp CHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTT
T ss_pred CchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCC
Confidence 88899999998888778899999999999999999999999999999999999999999995 99999999999999887
Q ss_pred CCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 652 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 652 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
.+ +.++|||+... ..+.+++++ +++++||.||+|..|+++++||+|+||||||++|++..
T Consensus 468 ~~-~~~~a~vv~~~----~~~~~~l~~----~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 468 EQ-PYLCAYFVSEK----HIPLEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp SC-EEEEEEEEESS----CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred CC-eEEEEEEEeCC----CCCHHHHHH----HHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 77 88999999865 356666665 57789999999999999999999999999999998754
No 14
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.1e-80 Score=701.59 Aligned_cols=500 Identities=18% Similarity=0.194 Sum_probs=413.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 27 l~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 98 (539)
T 1mdb_A 27 FGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRL 98 (539)
T ss_dssp HHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHc
Confidence 45678888899999999998766 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|+++||++|.++.+++.+++++++++++|+++.... .........+....+. ..+++..... .+.++
T Consensus 99 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~ 166 (539)
T 1mdb_A 99 GALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEAE-----------EFLPL 166 (539)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCCT-----------TSEEG
T ss_pred CeEEecCCCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCcc-----------chhhh
Confidence 999999999999999999999999999999875310 0000112222222222 1122211100 01111
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH--H
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW--L 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~ 415 (729)
... ...........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++. .
T Consensus 167 ~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 242 (539)
T 1mdb_A 167 EDL----HTEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPG 242 (539)
T ss_dssp GGC----CCCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhc----cccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHH
Confidence 110 0111122345689999999999999999999999999999988888889999999999999999999885 6
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.
T Consensus 243 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~ 321 (539)
T 1mdb_A 243 VLGVLYAGGRVVLSPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAV 321 (539)
T ss_dssp HHHHHHTTCEEEECSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHH
T ss_pred HHHHHHhCCEEEECCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999864 678899999999999999999999999987654445678999999999999999999988877
Q ss_pred cCCCCeeecccccccccccccCCcccccccccccCCCCC-cEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMG-CKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~-~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
+ +++++|.||+||+++.+............++|+|+++ .+++|+|++|+++|.|+. |||+|++..+..+ |+++++
T Consensus 322 ~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~ 397 (539)
T 1mdb_A 322 F-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRG-YYKAEE 397 (539)
T ss_dssp T-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSS-CTTCHH
T ss_pred h-CCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchh-hcCChh
Confidence 6 4889999999997654333222222345789999976 489999999999999997 9999976655443 467888
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.|++.|..++ ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..|
T Consensus 398 ~t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g- 469 (539)
T 1mdb_A 398 HNAASFTEDG------FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG- 469 (539)
T ss_dssp HHHHHBCTTS------CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-
T ss_pred hhhhhccCCC------CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-
Confidence 8888887433 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHhh-CCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.++|||++++ . ..+.+++++ +++++ ||.||+|+.|+++++||+|+||||||++|++++.+
T Consensus 470 ~~~~a~vv~~~-~--~~~~~~l~~----~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 470 ERSCVFIIPRD-E--APKAAELKA----FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp EEEEEEEEESS-S--CCCHHHHHH----HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred ceEEEEEEECC-C--CCCHHHHHH----HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 88999999875 2 356666666 46676 99999999999999999999999999999999876
No 15
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=7.8e-80 Score=694.64 Aligned_cols=495 Identities=22% Similarity=0.207 Sum_probs=410.4
Q ss_pred hHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
....++|.++++++||++|+++.+.. .++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 34567788899999999999986542 489999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC--cEEEEcCCCCCcccccCCCCcCH
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISW 334 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 334 (729)
++|+++||+||.++.+++.+++++++++++|+++... +....+...... ..+.+. ....+
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~ 151 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSL 151 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHH
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccH
Confidence 9999999999999999999999999999999987532 112222211110 000000 01122
Q ss_pred HHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH
Q 004815 335 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 414 (729)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 414 (729)
.+..... ....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.++.
T Consensus 152 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 152 AERLRSA----AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHC----CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH
T ss_pred HHHhhcc----CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH
Confidence 3332221 122334456789999999999999999999999999999999888899999999999999999999998
Q ss_pred HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 415 ~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
.++.+++.|+++++.+. .++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||++++++.+++..
T Consensus 228 ~~~~~~~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~ 306 (517)
T 3r44_A 228 TVIFSAMRGVTLISMPQ-FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA 306 (517)
T ss_dssp HHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCeEEEEeCC-CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHh
Confidence 76666669999999864 68899999999999999999999999998765444566889999999999999999998876
Q ss_pred ccCCCCeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
. +++++|.||+||+++.++..... .....+++|+|+++++++|+|++|++++.| . |||+|++..+..+ |++++
T Consensus 307 ~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~G-Y~~~p 380 (517)
T 3r44_A 307 K--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKE-YWNRP 380 (517)
T ss_dssp T--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSE-ETTCH
T ss_pred c--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhh-hCCCh
Confidence 5 58999999999998765443332 234567899999999999999999999998 4 9999976655543 46788
Q ss_pred cccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004815 574 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 653 (729)
Q Consensus 574 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g 653 (729)
+.|++.|.. +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++..|
T Consensus 381 ~~t~~~f~~-------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g 452 (517)
T 3r44_A 381 EATRDAFDN-------GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG 452 (517)
T ss_dssp HHHHHTEET-------TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE
T ss_pred hhhHhhhcC-------CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC
Confidence 889888842 39999999999999999999999999999999999999999995 9999999999999988877
Q ss_pred ceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 654 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 654 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
+.++++| ..+ +. ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++++.+
T Consensus 453 -~~~~a~v-~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 513 (517)
T 3r44_A 453 -EIAAAIV-VAD-QN-EVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSA 513 (517)
T ss_dssp -EEEEEEE-EEC-TT-TCCHHHHHH----HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGG
T ss_pred -ceEEEEE-ECC-CC-CCCHHHHHH----HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHh
Confidence 7788888 444 33 456666665 5778899999999999999999999999999999999876
No 16
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=3.8e-79 Score=690.81 Aligned_cols=499 Identities=16% Similarity=0.131 Sum_probs=410.1
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..+.|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 6 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 6 MIDSIEQFAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp HHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 34668888899999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|+++||++|.++.+++.+++++++++++|+++......... ....+.++.
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~------------------------------~~~~~~~~~ 127 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI------------------------------SLVSLSEIE 127 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS------------------------------EEEEHHHHH
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC------------------------------cccchhhhh
Confidence 99999999999999999999999999999987532111000 011223322
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh--CCCCCCCEEEEccCcchhhhHHHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNLGWMMGPWLV 416 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~i 416 (729)
..... ...........++++|||+|||||||.||||+++|+++++.+.+.... +++.+++++++..+++|+.+.+.+
T Consensus 128 ~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 206 (521)
T 3l8c_A 128 SAKLA-EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYW 206 (521)
T ss_dssp HHHHH-TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHH
T ss_pred hcccc-cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHH
Confidence 22111 111222345678999999999999999999999999999888777665 788899999999999999999989
Q ss_pred HHHhhcCceEEEeCCC--CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 417 YASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 417 ~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
+.++..|+++++.+.. .++..+++.|.++++|++.++|+++..+.........++++||.+++||+++++++.+++.+
T Consensus 207 ~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~ 286 (521)
T 3l8c_A 207 APTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFE 286 (521)
T ss_dssp HHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHH
Confidence 9999999999998753 36788999999999999999999999998876656677899999999999999999999998
Q ss_pred ccCCCCeeecccccccccccccCCcc----cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTL 570 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~ 570 (729)
.+++++++|.||+||+++.++..... ......++|+|++|++++|+|++|+++|.|+. |||+|.+..+..+ |+
T Consensus 287 ~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~ 363 (521)
T 3l8c_A 287 RFPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKG-YL 363 (521)
T ss_dssp HCTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSC-BT
T ss_pred HCCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChh-hc
Confidence 88889999999999998765443221 12245689999999999999999999999997 9999976655443 46
Q ss_pred ccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCC
Q 004815 571 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 650 (729)
Q Consensus 571 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~ 650 (729)
++++.|++.|... ++.+||+|||+|++++||+++|+||+||+||++|++|+|.|||++|. +||+|.+|+|++.++.
T Consensus 364 ~~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~ 439 (521)
T 3l8c_A 364 NNPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNK 439 (521)
T ss_dssp TCHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSS
T ss_pred CCchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecC
Confidence 7888888888643 35679999999999999999999999999999999999999999995 9999999999998765
Q ss_pred CCCceeEEEEEEecCCCCCC--CChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhh
Q 004815 651 DGGPEQLTIVVVFKDSNYTP--PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 651 ~~g~~~l~a~vv~~~~~~~~--~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~ 724 (729)
..+.+.++|+|++++ +... ....++.+.|+++|+++||.||+|..|+++++||+|+||||||++|++++.+..
T Consensus 440 ~~~~~~~~a~vv~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 440 EHKVQNLLAYIVVKD-GVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp SCC---CEEEEEECT-TSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred CCCceEEEEEEEecC-ccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 544478999999987 4311 122356777888999999999999999999999999999999999999987633
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.5e-80 Score=709.01 Aligned_cols=488 Identities=20% Similarity=0.227 Sum_probs=322.6
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 147 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLK 147 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 456788999999999999999776 999999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|+++||++|.++.+++.+++++++++++|+++..... +.....++... . .
T Consensus 148 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~-~---------------~ 198 (570)
T 4gr5_A 148 AGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGR-------------LTGTTTLYVED-E---------------A 198 (570)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTS-------------SCSSEEEECCC------------------
T ss_pred HCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhc-------------ccCCcceeeec-c---------------c
Confidence 99999999999999999999999999999998753211 11111111000 0 0
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHH
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVY 417 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~ 417 (729)
... ...........++++|||+|||||||.||||+++|+++.+.+.+ ...++++++|++++.+|++|+.+.+.++
T Consensus 199 ~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~ 273 (570)
T 4gr5_A 199 ASD----APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELF 273 (570)
T ss_dssp ---------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHH
T ss_pred ccc----ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHH
Confidence 000 01112233467899999999999999999999999999876654 3567899999999999999999988999
Q ss_pred HHhhcCceEEEeCC-CCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhcc
Q 004815 418 ASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 496 (729)
Q Consensus 418 ~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~ 496 (729)
.+|+.|+++++.+. ..++..+++.|+++++|++.++|+++..|++... .++++||.+++|||+++++..+++.+.+
T Consensus 274 ~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~ 350 (570)
T 4gr5_A 274 GALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDH 350 (570)
T ss_dssp HHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHC
T ss_pred HHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhC
Confidence 99999999999864 3578899999999999999999999999987642 3478999999999999999999988888
Q ss_pred CCCCeeecccccccccccccCCcc---cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccc
Q 004815 497 LYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 573 (729)
Q Consensus 497 ~~~~l~~~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~ 573 (729)
++++++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|+. |||+|.+..+..+ |++++
T Consensus 351 ~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~G-Y~~~~ 427 (570)
T 4gr5_A 351 PALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHG-YVSRP 427 (570)
T ss_dssp TTCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCE-ETTCH
T ss_pred CCcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchh-cCCCc
Confidence 888999999999998755433221 12334679999999999999999999999996 9999966555433 46788
Q ss_pred cccccccccccC--CCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004815 574 NHYDVYFSGMPS--RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 651 (729)
Q Consensus 574 ~~~~~~f~~~p~--~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~ 651 (729)
+.|++.|..+|+ .+|.+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++.
T Consensus 428 ~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~ 506 (570)
T 4gr5_A 428 ALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRL 506 (570)
T ss_dssp HHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC----------------------------------------
T ss_pred hhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCC
Confidence 899999988775 346789999999999999999999999999999999999999999995 99999999999998877
Q ss_pred CCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHH
Q 004815 652 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 720 (729)
Q Consensus 652 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~ 720 (729)
++ +.++|||+.+..+. ..+.+++++ +|+++||.||+|..|+++++||+|++|||||++|++.-
T Consensus 507 ~~-~~~~a~vv~~~~~~-~~~~~~l~~----~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~g 569 (570)
T 4gr5_A 507 GD-KQLVAYVVAERADA-PPDAAELRR----HVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGSG 569 (570)
T ss_dssp ---------------------------------------------------------------------
T ss_pred CC-eEEEEEEEecCCCC-CcCHHHHHH----HHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhccC
Confidence 77 88999999875122 234445544 67888999999999999999999999999999998753
No 18
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=3e-78 Score=680.19 Aligned_cols=487 Identities=20% Similarity=0.191 Sum_probs=401.0
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.+.+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 4 l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 4 VNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp HHHHHHHHHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 456788888999999999986211 38999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEE--ecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFT--QDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|++++|+||.++.+++.+++++++++++|+ ++.. ...+........ ++ .+.+
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~ 131 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGD 131 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGG
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------Eecc
Confidence 999999999999999999999999999999 5431 111111111111 11 1111
Q ss_pred HHHHhhcc-ccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCC--CCCCEEEEccCcchhhhH
Q 004815 337 FLERVRKL-KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI--RKADIVAWPTNLGWMMGP 413 (729)
Q Consensus 337 ~~~~~~~~-~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~ 413 (729)
+....... .....+.....++++|||+|||||||.||||+++|+++.+.+.+....+++ +++|++++.+|++|++++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~ 211 (504)
T 1t5h_X 132 LVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGF 211 (504)
T ss_dssp TEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHH
T ss_pred hhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchH
Confidence 11110000 001111134568999999999999999999999999999988888778888 889999999999999998
Q ss_pred -HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcC-C-CCCCCCCCccEEEeecCCCCHhHHH
Q 004815 414 -WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN-C-IDGYDWSSIRCFGSTGEASNVDEYL 490 (729)
Q Consensus 414 -~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~-~-~~~~~l~sLr~v~~gGe~l~~~~~~ 490 (729)
..++.+|+.|+++++.+. .++..+++.|+++++|++.++|++++.|.+.. . ....++++||.+++|||++++++.+
T Consensus 212 ~~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~ 290 (504)
T 1t5h_X 212 FAVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLE 290 (504)
T ss_dssp TTTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHH
T ss_pred HHHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHH
Confidence 678899999999999875 68889999999999999999999999998764 2 2345689999999999999999999
Q ss_pred HHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCC---CccCCCCCceeEEEee-ccccCC
Q 004815 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG---CPIPQNVPGMGELALS-PLIFGA 566 (729)
Q Consensus 491 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g---~~~p~g~~giGel~v~-~~~~~~ 566 (729)
++.+.++ .+++|.||+||+++.+. .. ....+++|.|+++++++|+|+++ +++|.|+. |||+|+ +..+..
T Consensus 291 ~~~~~~~-~~~~~~YG~TE~~~~~~--~~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~ 363 (504)
T 1t5h_X 291 TVHQHLP-GEKVNIYGTTEAMNSLY--MR--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFV 363 (504)
T ss_dssp HHHHHCC-SEEEEEEEETTTEEEEE--EE--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCC
T ss_pred HHHHhcC-cceeeeecccccccccc--cc--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeec
Confidence 9988775 78999999999843221 11 23457899999999999999888 99999997 999997 544432
Q ss_pred CcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEe
Q 004815 567 SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 646 (729)
Q Consensus 567 ~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~ 646 (729)
.|+++++.|++.|.. | ||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++
T Consensus 364 -GY~~~~~~t~~~f~~-----g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~ 434 (504)
T 1t5h_X 364 -GYLNQPQATAEKLQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIG 434 (504)
T ss_dssp -CBTTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEE
T ss_pred -eecCCchhhhhhhcC-----C--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEE
Confidence 256788888888831 3 9999999999999999999999999999999999999999995 999999999999
Q ss_pred ecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 647 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 647 ~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
.+++..| +.++|||++++ +. ..+.+++++ ++++ +||.||+|+.|+++++||+|+||||||++|++++.
T Consensus 435 ~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 435 LADQRWG-QSVTACVVPRL-GE-TLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp EECSSSS-EEEEEEEEECT-TC-CCCHHHHHH----HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred eecCCCC-cEEEEEEEecC-Cc-CcCHHHHHH----HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 9998887 89999999987 54 456666665 5777 89999999999999999999999999999998864
No 19
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1e-79 Score=698.10 Aligned_cols=505 Identities=19% Similarity=0.186 Sum_probs=327.7
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 32 l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 32 LTRILTVGVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp TTHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 34678888899999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
|++++|++|.++.+++.+++++++++++|+++..... ........+...... ..+.+.... .....+.++
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~ 174 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDW 174 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHH
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhh
Confidence 9999999999999999999999999999998753210 000112222222222 222222111 012233444
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHH--H
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW--L 415 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~ 415 (729)
...... .........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.++.. .
T Consensus 175 ~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~ 251 (544)
T 3o83_A 175 IETPAE---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPG 251 (544)
T ss_dssp HHSCCS---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hhcccc---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHH
Confidence 332211 11122345689999999999999999999999999999999998999999999999999998887764 6
Q ss_pred HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhc
Q 004815 416 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 495 (729)
Q Consensus 416 i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~ 495 (729)
++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++||+++++++.+++.+.
T Consensus 252 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~ 330 (544)
T 3o83_A 252 ALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEV 330 (544)
T ss_dssp HHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHH
T ss_pred HHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999875 578899999999999999999999999988765555668899999999999999999998877
Q ss_pred cCCCCeeecccccccccccccCCcccccccccccCCC-CCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccc
Q 004815 496 ALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 574 (729)
Q Consensus 496 ~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~ 574 (729)
+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++|+++|.|+. |||+|++..+..+ |+++++
T Consensus 331 ~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~ 406 (544)
T 3o83_A 331 L-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCG-YYQSPE 406 (544)
T ss_dssp H-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSC-CTTCHH
T ss_pred h-CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchh-hcCChh
Confidence 6 48999999999998655443333333457899996 89999999999999999997 9999976655443 467888
Q ss_pred ccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004815 575 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 654 (729)
Q Consensus 575 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~ 654 (729)
.|++.|..+ +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..|
T Consensus 407 ~t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g- 478 (544)
T 3o83_A 407 HNSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG- 478 (544)
T ss_dssp HHHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC-----------------------------------------
T ss_pred hhhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-
Confidence 898888643 39999999999999999999999999999999999999999995 9999999999999998887
Q ss_pred eeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 655 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 655 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+.++|+|+.++ . ..+.+++++ ++++ .||.||+|..|+++++||+|+||||||++|++++...
T Consensus 479 ~~~~a~vv~~~-~--~~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 541 (544)
T 3o83_A 479 EKSCAFIVSRN-P--ELKAVVLRR----HLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTS 541 (544)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ceEEEEEEeCC-C--CCCHHHHHH----HHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhc
Confidence 88999999876 2 234455555 4666 7999999999999999999999999999999998753
No 20
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=4.9e-78 Score=684.55 Aligned_cols=502 Identities=18% Similarity=0.150 Sum_probs=415.5
Q ss_pred Hhh-hhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 179 AKN-CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 179 ~~~-~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
..+ +|.++++++ |++|+++.+.+ +++||+||+++++++|+.|+++|+++||+|+|+++|++++++++|||++
T Consensus 27 l~~~~l~~~~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 27 TQLRKYMERYAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred HHHHHHHhhhccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 345 566677778 99999984211 2899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC--CcEEEEcCCCCCcccccCCCCcCHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
+|++++|++|.++.+++.+++++++++++|+++... .....+....+ ..++.+... . ...+...|.
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~ 167 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILDSK--V----DYRGYQCLD 167 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETTCS--S----CBTTBCBHH
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeCCc--c----cccccccHH
Confidence 999999999999999999999999999999987532 22222222332 122222111 0 001233566
Q ss_pred HHHHHhhccccCccccccC------CCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh---CCCCCCCEEEEccC
Q 004815 336 DFLERVRKLKENEFAAVEQ------PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTN 406 (729)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~ 406 (729)
++...... ...+.... .++++|||+|||||||.||||+++|+++.+.+.+.... ++++++|++++.+|
T Consensus 168 ~~~~~~~~---~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 168 TFIKRNTP---PGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244 (548)
T ss_dssp HHHHHTSC---TTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred HHHhcCcc---ccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEecc
Confidence 66654321 00111122 23899999999999999999999999999988877666 78899999999999
Q ss_pred cchhhhHHH-HHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCC
Q 004815 407 LGWMMGPWL-VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485 (729)
Q Consensus 407 ~~~~~~~~~-i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~ 485 (729)
++|+++++. ++.++ .|+++++.+. .++..+++.|+++++|++.++|++++.|.+.......++++||.+++||++++
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLTK-FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECCC-CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcCC-CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCC
Confidence 999999865 56677 9999999864 68899999999999999999999999999876555567899999999999999
Q ss_pred HhHHHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeecccc
Q 004815 486 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIF 564 (729)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~ 564 (729)
+++.+++.+.+++++++|.||+||++..++... ......+++|+|+++++++|+| ++|+++|.|+. |||+|++..+
T Consensus 323 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v 399 (548)
T 2d1s_A 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPML 399 (548)
T ss_dssp HHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTS
T ss_pred HHHHHHHHHHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHH
Confidence 999999998887789999999999987655432 2234567999999999999999 78999999997 9999976655
Q ss_pred CCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEE
Q 004815 565 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 644 (729)
Q Consensus 565 ~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~V 644 (729)
..+ |+++++.|++.|..+ +||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|
T Consensus 400 ~~G-Y~~~~~~t~~~f~~~------g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V 471 (548)
T 2d1s_A 400 MKG-YVNNPEATKELIDEE------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGV 471 (548)
T ss_dssp CSE-ETTCHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEE
T ss_pred hhh-hcCChHHhhhcccCC------cEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEE
Confidence 443 467888888888532 39999999999999999999999999999999999999999995 9999999999
Q ss_pred EeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccc-eEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 645 IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVS-HVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 645 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~-~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++.+++..| +.++|+|++++ +. ..+.+++++ +++++|+.|++|. .|+++++||+|++||++|++|++++.+
T Consensus 472 ~~~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 472 AGVPDPVAG-ELPGAVVVLES-GK-NMTEKEVMD----YVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp EEEEETTTE-EEEEEEEEECT-TC-CCCHHHHHH----HHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred EEEEcCCCC-eeeEEEEEEcC-CC-CCCHHHHHH----HHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 999988777 88999999887 54 456666655 5788999999999 999999999999999999999999875
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2.5e-79 Score=741.23 Aligned_cols=561 Identities=17% Similarity=0.160 Sum_probs=336.8
Q ss_pred CHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecCCCCCCCCCCCCCCCcCCCCcchHHhhhhccccCCCCCCeEEE
Q 004815 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (729)
Q Consensus 118 ~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pd~~Al~ 197 (729)
+.++.++.+|++|..++..+++.+......+.....-.+. ..... -.......++|.++++++||++|++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~p~~~tl~~~l~~~a~~~pd~~Al~ 81 (979)
T 3tsy_A 12 SGLVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK---------LPDIY-IPNHLSLHDYIFQNISEFATKPCLI 81 (979)
T ss_dssp ---------------------------------CCCBCCS---------SCCCC-CCTTSCHHHHHTTTGGGTTTSEEEE
T ss_pred cCcccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC---------CCCCC-CCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 3499999999999999999988764333322222111111 01111 1112345678889999999999999
Q ss_pred EeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHH
Q 004815 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (729)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~ 277 (729)
+...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||+||.++.+++.++
T Consensus 82 ~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~ 155 (979)
T 3tsy_A 82 NGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQ 155 (979)
T ss_dssp ETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHH
T ss_pred ECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHH
Confidence 86321 289999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHHhhccccCccccccCCCC
Q 004815 278 LRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVE 357 (729)
Q Consensus 278 l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (729)
++++++++||+++... +....+.......++.+... . ......+...+.++...... .....+.....++
T Consensus 156 l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 225 (979)
T 3tsy_A 156 AKASNTKLIITEARYV------DKIKPLQNDDGVVIVCIDDN-E--SVPIPEGCLRFTELTQSTTE-ASEVIDSVEISPD 225 (979)
T ss_dssp HHHHTEEEEEECSTTT------TTSHHHHHTSCCEEEECCCC-T--TSCCCTTEEEGGGTSSCCSG-GGGGSCCSCCCTT
T ss_pred HHHcCCeEEEEChHHH------HHHHHHhhcCCceEEEeCCc-c--cccCCcccccHHHHhhcccc-ccccCCcCCCCcc
Confidence 9999999999998543 22233332222223332211 1 11111223334433322111 1112233456789
Q ss_pred CeeEEEeccCCCCCCceEEeCCchHHHHHHHHHh----hCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEEEeCCC
Q 004815 358 AFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIALYNGS 432 (729)
Q Consensus 358 ~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~ 432 (729)
++|||+|||||||+||||+++|+++++.+.+... .+++.++|++++.+|++|++++ ..++.+|..|+++++.+.
T Consensus 226 d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~- 304 (979)
T 3tsy_A 226 DVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPK- 304 (979)
T ss_dssp SEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSS-
T ss_pred ceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCC-
Confidence 9999999999999999999999999988776543 4578899999999999999998 457899999999999864
Q ss_pred CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccccccccc
Q 004815 433 PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGG 512 (729)
Q Consensus 433 ~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~ 512 (729)
.++..+++.|+++++|++.++|+++..|.+.......++++||.+++||+++++++.+++.+.+++++++|.||+||+++
T Consensus 305 ~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~ 384 (979)
T 3tsy_A 305 FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGP 384 (979)
T ss_dssp CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGGCS
T ss_pred CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhhhH
Confidence 67889999999999999999999999999887666777899999999999999999999998888899999999999987
Q ss_pred ccccCC----cccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCC
Q 004815 513 GFITGS----LLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRN 587 (729)
Q Consensus 513 ~~~~~~----~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~ 587 (729)
+++... .......+++|+|++|++++|+| ++|+++|.|++ |||+|++..+..+ |+++++.|++.|..+
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~G-Y~~~p~~t~~~f~~~---- 457 (979)
T 3tsy_A 385 VLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKG-YLNNPAATAETIDKD---- 457 (979)
T ss_dssp EEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSE-ETTCHHHHHHHBCTT----
T ss_pred HHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCcccc-ccCChhhhhhhccCC----
Confidence 544332 12234567899999999999999 55999999997 9999976665543 467888898888643
Q ss_pred CceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCC
Q 004815 588 GQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSN 667 (729)
Q Consensus 588 g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~ 667 (729)
+||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++++..| +.++|||+..+ +
T Consensus 458 --g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv~~~-~ 532 (979)
T 3tsy_A 458 --GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVVKSK-D 532 (979)
T ss_dssp --SCEEEEEEEEECTTSCEEEEEESCC-----------------------------------------------------
T ss_pred --CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEEECC-C
Confidence 39999999999999999999999999999999999999999995 9999999999999988777 88999999876 4
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 668 YTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 668 ~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
. ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++++.+
T Consensus 533 ~-~~~~~~l~~----~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 533 S-ELSEDDVKQ----FVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp -------------------------------------------------------
T ss_pred C-CCCHHHHHH----HHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence 3 345555555 6788999999999999999999999999999999998875
No 22
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=3.7e-79 Score=688.66 Aligned_cols=497 Identities=17% Similarity=0.153 Sum_probs=316.7
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|+++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 8 l~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 79 (509)
T 3ivr_A 8 LADVYRRNAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALI 79 (509)
T ss_dssp HHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 45778889999999999999776 9999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 338 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 338 (729)
|++++|+||.++.+++.+++++++++++|+++... ...............++.... ....+.++.
T Consensus 80 Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 144 (509)
T 3ivr_A 80 GAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFK 144 (509)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGG
T ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHh
Confidence 99999999999999999999999999999987532 111111122222111111111 111111111
Q ss_pred HHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHH
Q 004815 339 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 418 (729)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~ 418 (729)
... .....+.....+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.
T Consensus 145 ~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~ 221 (509)
T 3ivr_A 145 DLA---SDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT 221 (509)
T ss_dssp GTC---CCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hcc---CCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHH
Confidence 100 11122334567899999999999999999999999999999999989999999999999999999999987777
Q ss_pred HhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCC
Q 004815 419 SLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 498 (729)
Q Consensus 419 ~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~ 498 (729)
+++.|++.++.. ..++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ +..+++...+++
T Consensus 222 ~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~ 295 (509)
T 3ivr_A 222 LQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPN 295 (509)
T ss_dssp HHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTT
T ss_pred HHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCC
Confidence 777777777766 578899999999999999999999999998875 44568899999999987 777788888878
Q ss_pred CCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 499 KPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 499 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
++++|.||+||++++++..... ....++|+|++|++++|+|++|+++|.|+. |||+|++..+..+ |+++++.|++
T Consensus 296 ~~~~~~YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g-Y~~~~~~t~~ 370 (509)
T 3ivr_A 296 ATFWATFGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKG-YWNNAAATQH 370 (509)
T ss_dssp CEEEEEEEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCE-ETTCHHHHHH
T ss_pred CeEEcccCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCcccc-ccCCHHHhHH
Confidence 9999999999998765543322 223459999999999999999999999997 9999976655443 4678888888
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEccc--CCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCcee
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA--DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQ 656 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~--d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~ 656 (729)
.|.. +||+|||+|++++||+++|+||. ||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.
T Consensus 371 ~f~~-------g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~ 441 (509)
T 3ivr_A 371 AFRN-------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EA 441 (509)
T ss_dssp HTGG-------GSEEEEEEEEECTTSCEEEEEEC----------------------------------------------
T ss_pred Hhhc-------CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cE
Confidence 8852 39999999999999999999999 999999999999999999995 9999999999999988877 88
Q ss_pred EEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhhhhcC
Q 004815 657 LTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNS 727 (729)
Q Consensus 657 l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~~~~~ 727 (729)
++|+|++.+ +. ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++++.+..++.
T Consensus 442 ~~a~v~~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~ 506 (509)
T 3ivr_A 442 IKAVCVCKP-GE-SIAADALAE----FVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHH 506 (509)
T ss_dssp -----------------------------------------------------------------------
T ss_pred EEEEEEeCC-CC-CCCHHHHHH----HHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccccc
Confidence 999999876 44 345555555 677889999999999999999999999999999999998866554
No 23
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=7.4e-79 Score=690.58 Aligned_cols=501 Identities=20% Similarity=0.210 Sum_probs=375.8
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|+++++++||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 20 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 20 LWDFLERAAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp THHHHHHHHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 45678888889999999996321 12248999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-c-EEEEcCCCCCcccccCCCCcCHHH
Q 004815 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-L-AIVIPAKGSSFSMKLRDGDISWLD 336 (729)
Q Consensus 259 Ga~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~~~~~~~~~~ 336 (729)
|+++||++|.++.+++.+++++++++++|+++... +....+...++. . ++++.... ..+...+.+
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 162 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEE 162 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHH
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHH
Confidence 99999999999999999999999999999987532 122222222222 1 22222110 012234444
Q ss_pred HHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHH--HhhCCCCCCCEEEEccCcchhhhHH
Q 004815 337 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--WCHMDIRKADIVAWPTNLGWMMGPW 414 (729)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~ 414 (729)
+..... ......+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++.
T Consensus 163 ~~~~~~-------~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 235 (541)
T 1v25_A 163 ALGEEA-------DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC 235 (541)
T ss_dssp HCCSCC-------CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT
T ss_pred HhhccC-------CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH
Confidence 432111 1134567899999999999999999999999998776653 3457889999999999999999987
Q ss_pred HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHh
Q 004815 415 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 494 (729)
Q Consensus 415 ~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~ 494 (729)
.++.+++.|+++++.+...++..+++.|+++++|++.++|+++..|++.......++++||.+++||+++++++.+++ .
T Consensus 236 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~ 314 (541)
T 1v25_A 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-E 314 (541)
T ss_dssp HHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-H
T ss_pred HHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-H
Confidence 788999999999998765688999999999999999999999999987643344568899999999999999999988 4
Q ss_pred ccCCCCeeecccccccccccccCCccc----------ccccccccCCCCCcEEEEEcCCCCccCCC--CCceeEEEeecc
Q 004815 495 RALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGNDGCPIPQN--VPGMGELALSPL 562 (729)
Q Consensus 495 ~~~~~~l~~~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~v~d~~g~~~p~g--~~giGel~v~~~ 562 (729)
.+ +++++|.||+||++..++...... .....++|+|++|++++|+|++|+++|.+ +. |||+|++.
T Consensus 315 ~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~--GEl~v~g~ 391 (541)
T 1v25_A 315 RM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKAL--GEVQLKGP 391 (541)
T ss_dssp HT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCC--EEEEEEST
T ss_pred Hh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcc--eEEEEeCc
Confidence 44 588999999999987655443221 12347899999999999999999999853 44 99999766
Q ss_pred ccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeee
Q 004815 563 IFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLET 642 (729)
Q Consensus 563 ~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a 642 (729)
.+..+ |+++++.|++.|..+ | ||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. .||+|.+|
T Consensus 392 ~v~~G-Y~~~p~~t~~~f~~~----g--~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a 463 (541)
T 1v25_A 392 WITGG-YYGNEEATRSALTPD----G--FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEA 463 (541)
T ss_dssp TSBSS-CBTCHHHHHTTBCTT----S--CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------
T ss_pred chhcc-ccCChhhhhhhccCC----C--CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEE
Confidence 55443 467888898888642 2 9999999999999999999999999999999999999999995 99999999
Q ss_pred EEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHh-hCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHH
Q 004815 643 AAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 721 (729)
Q Consensus 643 ~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~ 721 (729)
+|++.+++..+ +.++|||+++. . ..+.+++++ ++++ +||.||+|+.|+++++||+|+||||+|++|++++.
T Consensus 464 ~Vv~~~~~~~~-~~~~a~vv~~~-~--~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 535 (541)
T 1v25_A 464 AVVAIPHPKWQ-ERPLAVVVPRG-E--KPTPEELNE----HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYK 535 (541)
T ss_dssp CEEEEECSSSS-EEEEECC--------------------------CCCTTTSCSBC--------------CCTTHHHHST
T ss_pred EEEEecCCCcC-ceEEEEEEECC-C--CCCHHHHHH----HHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHH
Confidence 99999998887 88999998763 2 234455555 4667 89999999999999999999999999999999876
Q ss_pred hh
Q 004815 722 QL 723 (729)
Q Consensus 722 ~~ 723 (729)
+.
T Consensus 536 ~~ 537 (541)
T 1v25_A 536 NY 537 (541)
T ss_dssp TS
T ss_pred Hh
Confidence 53
No 24
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.9e-79 Score=693.76 Aligned_cols=512 Identities=18% Similarity=0.155 Sum_probs=323.0
Q ss_pred HHhhhhccccCCCCCCeEEEEe-ecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWC-DEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~-~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
...++|.++++++|+++|++.. +. ...+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 21 tl~~~l~~~a~~~p~~~a~~a~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~ 96 (550)
T 3rix_A 21 TAGEQLHKAMKRYALVPGTIAFTDA----HIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGAL 96 (550)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEEEET----TTCCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCceEEEeeec----CCCcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHH
Confidence 3456788888899999997621 11 011389999999999999999999999999999999999999999999999
Q ss_pred HcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCHH
Q 004815 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWL 335 (729)
Q Consensus 257 ~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 335 (729)
++|++++|++|.++.+++.+++++++++++|+++... .....+....+. ..+++...... ..+...+.
T Consensus 97 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 165 (550)
T 3rix_A 97 FIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKTD-----YQGFQSMY 165 (550)
T ss_dssp HHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSSC-----BTTBCBHH
T ss_pred HcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCcc-----ccCcccHH
Confidence 9999999999999999999999999999999987532 223333333332 22222211111 12345666
Q ss_pred HHHHHhhcccc--Cc-cccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh---CCCCCCCEEEEccCcch
Q 004815 336 DFLERVRKLKE--NE-FAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTNLGW 409 (729)
Q Consensus 336 ~~~~~~~~~~~--~~-~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~ 409 (729)
++......... .. .+.....++++|||+|||||||.||||+++|+++++.+.+.... +++.++|++++.+|++|
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 245 (550)
T 3rix_A 166 TFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHH 245 (550)
T ss_dssp HHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTS
T ss_pred HHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHH
Confidence 66654432111 01 11122346789999999999999999999999999887776554 57889999999999999
Q ss_pred hhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHH
Q 004815 410 MMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (729)
Q Consensus 410 ~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~ 489 (729)
+++++.++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.
T Consensus 246 ~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~ 324 (550)
T 3rix_A 246 GFGMFTTLGYLICGFRVVLMYR-FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVG 324 (550)
T ss_dssp HHHHHHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHH
Confidence 9999888999999999999864 678899999999999999999999999998876667778999999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCc
Q 004815 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 490 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
+++.+.++...++|.||+||+++.++.... .....+++|+|+++++++|+| ++|+++|.|+. |||+|++..+..+
T Consensus 325 ~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 400 (550)
T 3rix_A 325 EAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSG- 400 (550)
T ss_dssp HHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE-
T ss_pred HHHHHHcCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchh-
Confidence 999888875569999999999976554433 334568999999999999999 56999999997 9999976655443
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.|+..|..+ +||+|||+|++++||+++|+||+|||||++|+||+|.|||++|. +||+|.+|+|++++
T Consensus 401 Y~~~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~ 473 (550)
T 3rix_A 401 YVNNPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLP 473 (550)
T ss_dssp ETTCHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC---------------------------------------
T ss_pred hcCChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEee
Confidence 467888888888543 39999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCcc-ceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P-~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
++..| +.++|+|+.++ +. ..+.+++++ +++++|++|+.| ..|+++++||+|+||||||++|++++.+.
T Consensus 474 ~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 542 (550)
T 3rix_A 474 DDDAG-ELPAAVVVLEH-GK-TMTEKEIVD----YVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKA 542 (550)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cCCCC-ceEEEEEEecC-CC-CCCHHHHHH----HHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhh
Confidence 98887 88999999887 54 355555655 567778887655 57999999999999999999999999873
No 25
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=2.9e-77 Score=676.53 Aligned_cols=503 Identities=23% Similarity=0.241 Sum_probs=401.9
Q ss_pred CcchHHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHH
Q 004815 174 AFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253 (729)
Q Consensus 174 ~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~L 253 (729)
...|...++|+++++ +||++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344677788998888 999999998765 99999999999999999999999999999999999999999999
Q ss_pred HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcC---CcEEEEcCCCCCcccccCCC
Q 004815 254 AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQA---PLAIVIPAKGSSFSMKLRDG 330 (729)
Q Consensus 254 A~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~ 330 (729)
||+++|+++||++|.++.+++.+++++++++++|+++... .......+... ..++++...... ...
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRESE-----PRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEecccccc-----ccc
Confidence 9999999999999999999999999999999999987532 11222222111 222222211100 001
Q ss_pred CcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchH-HHHHHHHHhhCCCCCCCEEEEccCcch
Q 004815 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATP-FKAAADAWCHMDIRKADIVAWPTNLGW 409 (729)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~~ 409 (729)
...++++..... ...+.....++++|||+|||||||.||||+++|+++ .+...+....++++++|++++.+|++|
T Consensus 161 ~~~~~~~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 161 APLFEELIDAAA----PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFF 236 (529)
T ss_dssp CCBHHHHHHTSC----CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTS
T ss_pred ccchhhhhccCC----CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHH
Confidence 224666554221 122233457899999999999999999999999998 566555555678999999999999999
Q ss_pred hhhHH-HHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhH
Q 004815 410 MMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 488 (729)
Q Consensus 410 ~~~~~-~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~ 488 (729)
++++. .++.+|..|+++++.+...++..+++.|+++++|++.++|+++..+++..........+||.+++|||++++++
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~ 316 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREI 316 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHH
Confidence 99985 56789999999999865678899999999999999999999999998765333321248999999999999999
Q ss_pred HHHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCc
Q 004815 489 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 489 ~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
.+++.+.+ +++++|.||+||++..++..... ....+++|+|++|++++|+|++|+++|.|+. |||+|++..+..+
T Consensus 317 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g- 391 (529)
T 2v7b_A 317 GERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM- 391 (529)
T ss_dssp HHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC-
T ss_pred HHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc-
Confidence 99998776 48999999999996554443322 2456789999999999999999999999997 9999976555433
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeec
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 648 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~ 648 (729)
|+++++.|+..|.. +||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.
T Consensus 392 Y~~~~~~t~~~f~~-------~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~- 462 (529)
T 2v7b_A 392 YWNNREKSRATFLG-------EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEAAVVGV- 462 (529)
T ss_dssp BTTCHHHHHHHEET-------TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEEEEEEE-
T ss_pred cCCChHHHHHhhhc-------CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEEe-
Confidence 46788888888852 29999999999999999999999999999999999999999995 9999999999998
Q ss_pred CCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 649 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 649 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
++..+ +.++|+|++.+ +. ...+.+.+.|+++++++||+||+|..|+++++||+|+|||++|++|++
T Consensus 463 ~~~~~-~~~~a~vv~~~-~~--~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 463 DHGGL-VKTRAFVVLKR-EF--APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EETTE-EEEEEEEEECT-TC--CCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred cCCCc-eEEEEEEEecC-CC--CcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 55555 78999999876 33 112334556777899999999999999999999999999999999985
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=1.6e-76 Score=665.41 Aligned_cols=473 Identities=22% Similarity=0.224 Sum_probs=375.4
Q ss_pred hHHhhhhccccCCCCC-CeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHH
Q 004815 177 NPAKNCLSVNSKRSLD-DIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (729)
Q Consensus 177 ~~~~~~l~~~~~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~ 255 (729)
....+.|.++++++|+ ++|+++.++ ++||+||+++++++|++|+ .|++|+|+++|++++++++|||
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 3445667778888887 999999877 9999999999999998875 3889999999999999999999
Q ss_pred HHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-cEEEEcCCCCCcccccCCCCcCH
Q 004815 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-LAIVIPAKGSSFSMKLRDGDISW 334 (729)
Q Consensus 256 l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~ 334 (729)
+++|+++||+||.++.+++.+++++++++++|++.... ... .... ..+.+...
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~~------~~~~~~~~~~~~~--------------- 142 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LPP------ALGALERVDVDVR--------------- 142 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CCG------GGTTSEEEECCTT---------------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cch------hhccccccccccc---------------
Confidence 99999999999999999999999999999999987421 000 0001 01111000
Q ss_pred HHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhH-
Q 004815 335 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP- 413 (729)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~- 413 (729)
.....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|..+.
T Consensus 143 ----------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~ 212 (505)
T 3nyq_A 143 ----------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLV 212 (505)
T ss_dssp ----------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHT
T ss_pred ----------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHH
Confidence 000112234568899999999999999999999999999999998888999999999999999999887
Q ss_pred HHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCC---CCCCCCCccEEEeecCCCCHhHHH
Q 004815 414 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI---DGYDWSSIRCFGSTGEASNVDEYL 490 (729)
Q Consensus 414 ~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~---~~~~l~sLr~v~~gGe~l~~~~~~ 490 (729)
+.++.+|..|+++++.+. .++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++||+++++++.+
T Consensus 213 ~~~~~~l~~G~~~~~~~~-~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~ 290 (505)
T 3nyq_A 213 LGILGPLRRGGSVRHLGR-FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHE 290 (505)
T ss_dssp TTTHHHHHHTCEEEECSS-CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHH
T ss_pred HHHHHHHhcCCEEEECCC-CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHH
Confidence 578999999999999754 6778888888 88999999999999999874221 123467899999999999999999
Q ss_pred HHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcCCCCccCC---CCCceeEEEeeccccCCC
Q 004815 491 WLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ---NVPGMGELALSPLIFGAS 567 (729)
Q Consensus 491 ~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~---g~~giGel~v~~~~~~~~ 567 (729)
++...+ +++++|.||+||+++.++... .......++|+|++|++++|+|++|++++. |+. |||+|++..+..+
T Consensus 291 ~~~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~G 366 (505)
T 3nyq_A 291 RIAAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTE 366 (505)
T ss_dssp HHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCE
T ss_pred HHHHhc-CCeeecccchhhcccccccCC-CCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhh
Confidence 888766 489999999999987654433 334456789999999999999999999886 775 9999976655543
Q ss_pred cccccccccccccccccCCCCceeEEeCceEEEecCceEEEEccc-CCeeecCceeechHHHHHHHhcCCCCeeeeEEEe
Q 004815 568 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIG 646 (729)
Q Consensus 568 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~-d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~ 646 (729)
|+++++.|++.|..++ ||+|||+|++++||+++|+||+ |++||++|+||+|.|||++|. +||+|.+|+|++
T Consensus 367 -Y~~~~~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~ 438 (505)
T 3nyq_A 367 -YLNRPDATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTG 438 (505)
T ss_dssp -ETTCHHHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEE
T ss_pred -hCCChhHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEe
Confidence 4678889999997543 9999999999999999999997 699999999999999999995 999999999999
Q ss_pred ecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHH
Q 004815 647 VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 718 (729)
Q Consensus 647 ~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~ 718 (729)
.+++..| +.++|||++.+.+. ..+.+++++ +|+++||+||+|+.|+++++||+|+||||||++|++
T Consensus 439 ~~~~~~g-~~l~a~vv~~~~~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 439 EPDPDLG-ERIVAWIVPADPAA-PPALGTLAD----HVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp EEETTTE-EEEEEEEEESSTTS-CCCHHHHHH----HHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred eECCCCC-cEEEEEEEECCCCC-CCCHHHHHH----HHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 9998887 89999999886222 345555555 678889999999999999999999999999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.8e-75 Score=657.46 Aligned_cols=493 Identities=17% Similarity=0.174 Sum_probs=377.1
Q ss_pred hhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aG 259 (729)
.++|.++++++||++|+++.++ ++||+||+++++++|++|+++ +||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 4 DFWLYKQAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCHHHHHHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 3567788899999999999877 999999999999999999987 89999999999999999999999999
Q ss_pred CEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004815 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 339 (729)
Q Consensus 260 a~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 339 (729)
++++|++|.++.+++.+++++++++++|++...............+.. ............................
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEF----AGRDITTNGLLDNTMGIQYDTSNETVVP 148 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC-----------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccccccee----eeeecccccccccccccccccchhhccc
Confidence 999999999999999999999999999999864432211110000000 0000000000000000000000011110
Q ss_pred HhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHH
Q 004815 340 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 419 (729)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~ 419 (729)
.. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+
T Consensus 149 ~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~ 225 (501)
T 3ipl_A 149 KE---SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRA 225 (501)
T ss_dssp -C---CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHH
T ss_pred cC---CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHH
Confidence 00 001112234578999999999999999999999999999999988889999999999999999999999889999
Q ss_pred hhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCC
Q 004815 420 LLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYK 499 (729)
Q Consensus 420 L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~ 499 (729)
++.|+++++.+. .++..+++.|+++++|++.++|++++.|.+...... .+||.+++|||++++++.+++.+. ++
T Consensus 226 l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~ 299 (501)
T 3ipl_A 226 VIEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NL 299 (501)
T ss_dssp HHHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TC
T ss_pred HHcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CC
Confidence 999999999874 688999999999999999999999999988754332 389999999999999999888763 58
Q ss_pred CeeecccccccccccccCCcc-cccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCccccccccccc
Q 004815 500 PVIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDV 578 (729)
Q Consensus 500 ~l~~~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~ 578 (729)
+++|.||+||+++.++..... ......++|+|++|++++|+|++ .|.. |||+|.+..+..+ |+++++.++.
T Consensus 300 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~--GEl~v~g~~~~~g-Y~~~~~~t~~ 371 (501)
T 3ipl_A 300 PIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGH--GELMIKGANVMNG-YLYPTDLTGT 371 (501)
T ss_dssp CEEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCC--EEEEEESTTSCSC-CSBSTTCCCS
T ss_pred CEeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCc--cEEEEeccchhhh-hCcChhhcch
Confidence 999999999998754443332 22355789999999999999986 3444 9999976655443 3567777765
Q ss_pred ccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 579 YFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 579 ~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
|. .+||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++
T Consensus 372 -~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~ 441 (501)
T 3ipl_A 372 -FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPK 441 (501)
T ss_dssp -EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred -hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEE
Confidence 42 239999999999999999999999999999999999999999995 9999999999999998877 8899
Q ss_pred EEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 659 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 659 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
++++... ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++....
T Consensus 442 a~v~~~~----~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~ 497 (501)
T 3ipl_A 442 LYFVSES----DISKAQLIA----YLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHH 497 (501)
T ss_dssp EEEEESS----CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCC------------------
T ss_pred EEEEeCC----CCCHHHHHH----HHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhcccc
Confidence 9998765 456666666 5778899999999999999999999999999999987654
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.7e-75 Score=666.91 Aligned_cols=503 Identities=16% Similarity=0.185 Sum_probs=309.1
Q ss_pred hhhhccccCCCCCCeEEEEeecC--CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 180 KNCLSVNSKRSLDDIVIRWCDEG--DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~--~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
.++|+++++++||++|+++.+.. ......+++||+||+++++++|++|++.|+ +||+|+|+++|++++++++|||++
T Consensus 23 ~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~ 101 (562)
T 3ite_A 23 SHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMK 101 (562)
T ss_dssp THHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHH
Confidence 46688899999999999986531 011223589999999999999999999999 799999999999999999999999
Q ss_pred cCCEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004815 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 337 (729)
Q Consensus 258 aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 337 (729)
+|+++||++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.
T Consensus 102 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~ 159 (562)
T 3ite_A 102 SGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIEN 159 (562)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHH
T ss_pred hCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhh
Confidence 9999999999999999999999999999999875321110 0011111110 11122222
Q ss_pred HHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh--------CCCCCCCEEEEccCcch
Q 004815 338 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--------MDIRKADIVAWPTNLGW 409 (729)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~d~~l~~~~~~~ 409 (729)
..... .........++++|||+|||||||.||||+++|+++.+.+.+.... +.+...+++++.++++|
T Consensus 160 ~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 160 LSTQD----TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHSC----CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred ccccc----ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 22211 1122234567889999999999999999999999998877654432 45788999999999999
Q ss_pred hhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHH
Q 004815 410 MMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 489 (729)
Q Consensus 410 ~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~ 489 (729)
+.++..++.++..|+++++.+....+..+.+.|+++++|++.++|++++.+... ..++++||.+++||+++++++.
T Consensus 236 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~ 311 (562)
T 3ite_A 236 DVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQ 311 (562)
T ss_dssp THHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHH
T ss_pred hhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHH
Confidence 999999999999999999876433456788999999999999999999887432 3457899999999999999999
Q ss_pred HHHHhccCCCCeeecccccccccccccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCc
Q 004815 490 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASS 568 (729)
Q Consensus 490 ~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~ 568 (729)
+++.+.+ +++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|.|++ |||+|.+..+..+
T Consensus 312 ~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 387 (562)
T 3ite_A 312 QIWSSSD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANG- 387 (562)
T ss_dssp HHHTTCS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCE-
T ss_pred HHHhhCC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchh-
Confidence 9887654 589999999999987665544444455678999999999999996 5788999997 9999976655443
Q ss_pred ccccccccccccccccCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeechHHHHHHHhcCC-CCeeeeEEEee
Q 004815 569 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD-SNVLETAAIGV 647 (729)
Q Consensus 569 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~-p~V~~a~Vv~~ 647 (729)
|+++++.++..|. +|.+||+|||+|++|+||+++|+||+|||||++|+||+|.|||++|. +| |.|.+++|++.
T Consensus 388 Y~~~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 388 YLNRPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLL 461 (562)
T ss_dssp ESSCTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------
T ss_pred hCCCccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEe
Confidence 4567777664433 36789999999999999999999999999999999999999999996 65 88999999998
Q ss_pred cCCCCCceeEEEEEEecCCCCCC-------CChHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCC-CCChhhHHHHHHH
Q 004815 648 PPPDGGPEQLTIVVVFKDSNYTP-------PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT-ATNKVMRRVLRKQ 719 (729)
Q Consensus 648 ~~~~~g~~~l~a~vv~~~~~~~~-------~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t-~~GKidR~~L~~~ 719 (729)
+++..++..++++++... .... .....+.+.|+++|+++||.||+|+.|+++++||+| ++||+||++|+++
T Consensus 462 ~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~~ 540 (562)
T 3ite_A 462 NHPGTSKQFLVSFVASSG-AAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEHM 540 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcceEEEEEEeccc-ccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHHH
Confidence 888777334444444332 1100 011223456777889999999999999999999998 9999999999999
Q ss_pred HHhhh
Q 004815 720 LAQLD 724 (729)
Q Consensus 720 ~~~~~ 724 (729)
+.++.
T Consensus 541 ~~~~~ 545 (562)
T 3ite_A 541 FHTLS 545 (562)
T ss_dssp -----
T ss_pred HhccC
Confidence 98754
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=4e-74 Score=660.14 Aligned_cols=505 Identities=15% Similarity=0.117 Sum_probs=401.4
Q ss_pred HhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHc
Q 004815 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (729)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~a 258 (729)
..++|.++++++||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 13 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 13 LVDVVRLRALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 45678888999999999998652 12249999999999999999999999999999999999999999999999999
Q ss_pred CCEEEecCCCCC---HHHHHHHHHhcCceEEEEecceecCCccccchhhHH-hhcC--CcEEEEcCCCCCcccccCCCCc
Q 004815 259 GYIVVSIADSFA---SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVI-DAQA--PLAIVIPAKGSSFSMKLRDGDI 332 (729)
Q Consensus 259 Ga~~vpldp~~~---~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~~~~~~ 332 (729)
|+++||++|.++ .+++.++++++++++++++...... ..... ...+ .....+.
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~------~~~~~~~~~~~~~~~~~~~--------------- 147 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKK------FTADELNTNPKFLKIPAIA--------------- 147 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHH------HCC-----CCEETTEEEEE---------------
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHH------HHHhhhhhcccccccceee---------------
Confidence 999999999884 5789999999999999998753210 00000 0000 0001110
Q ss_pred CHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhh
Q 004815 333 SWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMG 412 (729)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~ 412 (729)
.+++... ...........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|+++
T Consensus 148 -~~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g 222 (590)
T 3kxw_A 148 -LESIELN----RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMG 222 (590)
T ss_dssp -GGGCCGG----GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHH
T ss_pred -chhcccc----ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchh
Confidence 0000000 11122334567899999999999999999999999999999999989999999999999999999999
Q ss_pred HHH-HHHHhhcCceEEEeCCCC---ChhhHHHHHHHcCCcEEEecHHHHHHHHhcC---CCCCCCCCCccEEEeecCCCC
Q 004815 413 PWL-VYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKSTN---CIDGYDWSSIRCFGSTGEASN 485 (729)
Q Consensus 413 ~~~-i~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~---~~~~~~l~sLr~v~~gGe~l~ 485 (729)
+.. ++.+|+.|+++++.+... ++..+++.|+++++|++.++|+++..+.+.. .....++++||.+++||++++
T Consensus 223 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~ 302 (590)
T 3kxw_A 223 LIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVR 302 (590)
T ss_dssp HHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCC
T ss_pred hHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCC
Confidence 875 889999999999976432 6788999999999999999999999987752 234567899999999999999
Q ss_pred HhHHHHHHhccC-----CCCeeecccccccccccccCCcc--------------------------cccccccccCCCCC
Q 004815 486 VDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLL--------------------------QAQSLAAFSTPAMG 534 (729)
Q Consensus 486 ~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~ 534 (729)
+++.+++.+.++ +.+++|.||+||+++.++..... ......++|+|+++
T Consensus 303 ~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~ 382 (590)
T 3kxw_A 303 EETMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE 382 (590)
T ss_dssp HHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE
T ss_pred HHHHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC
Confidence 999999887763 35799999999999865543211 11234689999998
Q ss_pred cEEEEEcCC-CCccCCCCCceeEEEeeccccCCCcccccccccccccccccCC--CCceeEEeCceEEEecCceEEEEcc
Q 004815 535 CKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR--NGQILRRHGDVFERTSGGYYRAHGR 611 (729)
Q Consensus 535 ~~~~v~d~~-g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~--~g~~~y~TGDl~~~~~dG~l~~~GR 611 (729)
++|+|++ ++++|.|++ |||+|++..+..+ |+++++.|++.|..++.. .|.+||+|||+|+++ ||+|+|+||
T Consensus 383 --v~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR 456 (590)
T 3kxw_A 383 --VKIIDPDTLIPCDFDQV--GEIWVQSNSVAKG-YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGR 456 (590)
T ss_dssp --EEEECTTTCCBCCTTBC--EEEEEESTTSCCC-BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEE
T ss_pred --eEEEcCCCCcCCCCCCE--EEEEEeCCccccc-ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcC
Confidence 8899987 899999997 9999976655543 467889999999876543 255699999999999 999999999
Q ss_pred cCCeeecCceeechHHHHHHHhcCCCCee--eeEEEeecCCCCCceeEEEEEEecCCCC-CCCChHHHHHHHHHHHHhhC
Q 004815 612 ADDTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKL 688 (729)
Q Consensus 612 ~d~~iki~G~ri~~~eIE~~L~~~~p~V~--~a~Vv~~~~~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~L 688 (729)
+|||||++|+||+|.|||++|+..||+|. +|+|++++++. + +.++++++..+ +. ...+.+++++++++.|...+
T Consensus 457 ~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~-~~~~~~~~~~l~~~l~~~l~~~~ 533 (590)
T 3kxw_A 457 IKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKN-RFMDDVAQDNLFNEIFELVYENH 533 (590)
T ss_dssp SSCHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESC-TTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEecc-ccccchhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999944899998 89999988765 4 78999998876 32 12345667777666665543
Q ss_pred CCCCccceEEeCCCCCCCCCChhhHHHHHHHHHh
Q 004815 689 NPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 722 (729)
Q Consensus 689 ~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~ 722 (729)
...+.+..++.+++||+|+||||+|++|++++.+
T Consensus 534 ~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 534 QLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp SCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred CCceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 2223334556668999999999999999999876
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.3e-71 Score=637.68 Aligned_cols=494 Identities=16% Similarity=0.156 Sum_probs=389.6
Q ss_pred HHhhhhccccCCCCCCeEEEEeecCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~ 257 (729)
...++|+++++++|+.+++..... ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 22 tl~~~l~~~a~~~p~~~~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 96 (576)
T 3gqw_A 22 TLVDALDYAALSSAGMNFYDRRCQ-----LEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQY 96 (576)
T ss_dssp SHHHHHHHHTTSSCEEEEECTTSC-----EEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhCCCCeEEeCCCCC-----ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 456788889999999888754211 224899999999999999999999999999999999999999999999999
Q ss_pred cCCEEEecCCCCC-------HHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCCcEEEEcCCCCCcccccCCC
Q 004815 258 AGYIVVSIADSFA-------SLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAPLAIVIPAKGSSFSMKLRDG 330 (729)
Q Consensus 258 aGa~~vpldp~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 330 (729)
+|+++||+++.++ .+++.+++++++++++|+++... +............. ++.
T Consensus 97 ~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~-~~~------------- 156 (576)
T 3gqw_A 97 AGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPELH-VLS------------- 156 (576)
T ss_dssp TTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTCE-EEE-------------
T ss_pred hCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCcce-ecc-------------
Confidence 9999999999999 89999999999999999987532 11111111111111 110
Q ss_pred CcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhh-CCCCCCCEEEEccCcch
Q 004815 331 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MDIRKADIVAWPTNLGW 409 (729)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~ 409 (729)
. ...... ...........++++|||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|++|
T Consensus 157 ---~-~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h 229 (576)
T 3gqw_A 157 ---H-AWFKAL---PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYH 229 (576)
T ss_dssp ---H-HHHHTS---CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTS
T ss_pred ---h-hhhhcc---cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccc
Confidence 0 111111 111122234568999999999999999999999999999888776554 89999999999999999
Q ss_pred hhhHHH-HHHHhhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhcCC---CCCCCCCCccEEEeecC
Q 004815 410 MMGPWL-VYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC---IDGYDWSSIRCFGSTGE 482 (729)
Q Consensus 410 ~~~~~~-i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~---~~~~~l~sLr~v~~gGe 482 (729)
+++++. ++.++..|+++++.+.. .++..+++.|+++++|++.++|+++..+.+... ....++++||.+++|||
T Consensus 230 ~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 309 (576)
T 3gqw_A 230 DMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAE 309 (576)
T ss_dssp HHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSS
T ss_pred cccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCc
Confidence 999854 67889999999887532 367889999999999999999999988866432 23456899999999999
Q ss_pred CCCHhHHHHHHhccC-----CCCeeecccccccccccccCCcccc---------------------------cccccccC
Q 004815 483 ASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA---------------------------QSLAAFST 530 (729)
Q Consensus 483 ~l~~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~ 530 (729)
++++++.+++.+.++ +.+++|.||+||+++.++....... ....++|+
T Consensus 310 ~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~ 389 (576)
T 3gqw_A 310 PISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGK 389 (576)
T ss_dssp CCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCE
T ss_pred cCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCC
Confidence 999999999887764 5789999999999976554322110 11238999
Q ss_pred CCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecCceEEEEc
Q 004815 531 PAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHG 610 (729)
Q Consensus 531 p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~G 610 (729)
|++|++++|+|++|+++|.|++ |||+|++..+..+ |+++++.++..|. .+||+|||+|++ +||+++|+|
T Consensus 390 p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g-Y~~~~~~~~~~~~-------~g~~~TGDl~~~-~dG~l~~~G 458 (576)
T 3gqw_A 390 ALPEHGIEIRNEAGMPVAERVV--GHICISGPSLMSG-YFGDQVSQDEIAA-------TGWLDTGDLGYL-LDGYLYVTG 458 (576)
T ss_dssp ECTTCEEEEECTTSCBCCTTBC--EEEEEESTTSCCC-BTTCHHHHHHHHH-------HSCEEEEEEEEE-ETTEEEEEE
T ss_pred cCCCCeEEEECCCCCCCCCCCe--EEEEEeCcccccc-ccCCccccccccC-------CCeeeccceEEE-ECCEEEEEe
Confidence 9999999999999999999997 9999976655443 3556666665443 239999999999 799999999
Q ss_pred ccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhC-C
Q 004815 611 RADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL-N 689 (729)
Q Consensus 611 R~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L-~ 689 (729)
|+|||||++|+||+|.|||++|. +||+|.+|+|++..++.. .++++++... + .+.....+++.++++| +
T Consensus 459 R~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~~~~---~~~~~~~~~~-~-----~~~~~~~l~~~l~~~l~~ 528 (576)
T 3gqw_A 459 RIKDLIIIRGRNIWPQDIEYIAE-QEPEIHSGDAIAFVTAQE---KIILQIQCRI-S-----DEERRGQLIHALAARIQS 528 (576)
T ss_dssp ETTTCEEETTEEECHHHHHHHHT-TSSSCCTTSEEEEECTTS---CEEEEEECCC-C-----CHHHHHHHHHHHHHHHHH
T ss_pred cCcceEEECCEEECHHHHHHHHH-hCcccccccEEEEEcCCc---cEEEEEEEec-C-----chhHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 999999999998877643 3555555443 1 1223334444565666 5
Q ss_pred CCCccceEEeCC--CCCCCCCChhhHHHHHHHHHhhh
Q 004815 690 PLFKVSHVVPLP--SLPRTATNKVMRRVLRKQLAQLD 724 (729)
Q Consensus 690 ~~~~P~~i~~v~--~lP~t~~GKidR~~L~~~~~~~~ 724 (729)
.|++|..+.+++ +||+|++||+||++|++++.+..
T Consensus 529 ~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~ 565 (576)
T 3gqw_A 529 EFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAY 565 (576)
T ss_dssp HHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHH
T ss_pred HhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHHh
Confidence 789998888877 99999999999999999998743
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=1.3e-58 Score=517.79 Aligned_cols=396 Identities=17% Similarity=0.120 Sum_probs=310.5
Q ss_pred HHhhhhccccCCCCCCeEEEEeecC-CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHH
Q 004815 178 PAKNCLSVNSKRSLDDIVIRWCDEG-DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (729)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l 256 (729)
...++|.++++++||++|+++.+.. +.++..+++||+||+++++++|++|+++|+ +||+|+|+++|++++++++|||+
T Consensus 25 tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~ 103 (480)
T 3t5a_A 25 SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGAL 103 (480)
T ss_dssp CHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHH
Confidence 3457788889999999999998721 112334599999999999999999999996 99999999999999999999999
Q ss_pred HcCCEEEecCC---CCCHHHHHHHHHhcCceEEEEecceecCCccccchhhHHhhcCC-------cEEEEcCCCCCcccc
Q 004815 257 LAGYIVVSIAD---SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYSRVIDAQAP-------LAIVIPAKGSSFSMK 326 (729)
Q Consensus 257 ~aGa~~vpldp---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~ 326 (729)
++|+++|||++ .++.+++.+++++++++++|+++... ..+.+.... ..+.+....
T Consensus 104 ~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~------ 168 (480)
T 3t5a_A 104 QAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIEVDLLD------ 168 (480)
T ss_dssp HTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEEGGGSC------
T ss_pred HhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeEecccc------
Confidence 99999999999 88899999999999999999987532 112111110 111110000
Q ss_pred cCCCCcCHHHHHHHhhccccCccccccCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCC------CCE
Q 004815 327 LRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK------ADI 400 (729)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~ 400 (729)
.............++++|||+|||||||.||||+++|+++++.+.+....+++.+ +|+
T Consensus 169 ----------------~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~ 232 (480)
T 3t5a_A 169 ----------------LDAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSA 232 (480)
T ss_dssp ----------------TTCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEE
T ss_pred ----------------cccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCe
Confidence 0011112334457889999999999999999999999999999888888888877 999
Q ss_pred EEEccCcchhhhH-HHHHHHhhcCceEEEeCCC---CChhhHHHHHHHcCCcEEEecHHHHHHHHhc----CCCCCCCCC
Q 004815 401 VAWPTNLGWMMGP-WLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKST----NCIDGYDWS 472 (729)
Q Consensus 401 ~l~~~~~~~~~~~-~~i~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~----~~~~~~~l~ 472 (729)
+++.+|++|++++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..++.. ......+++
T Consensus 233 ~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~ 311 (480)
T 3t5a_A 233 LVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLG 311 (480)
T ss_dssp EEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCT
T ss_pred EEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchh
Confidence 9999999999996 5789999999999998643 3778899999999999 78889888877653 223456789
Q ss_pred CccEEEeecCCCCHhHHHHHHhccC-----CCCeeecccccccccccccCCccc------------------------cc
Q 004815 473 SIRCFGSTGEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQ------------------------AQ 523 (729)
Q Consensus 473 sLr~v~~gGe~l~~~~~~~~~~~~~-----~~~l~~~YG~TE~~~~~~~~~~~~------------------------~~ 523 (729)
+||.+++|||++++++.+++.+.++ +++++|.||+||+++.++...... ..
T Consensus 312 ~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 391 (480)
T 3t5a_A 312 NILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGAT 391 (480)
T ss_dssp TCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCE
T ss_pred hhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcc
Confidence 9999999999999999999988763 457999999999998665544321 12
Q ss_pred ccccccCCCCCcEEEEEcCC-CCccCCCCCceeEEEeeccccCCCcccccccccccccccccC-----CCCceeEEeCce
Q 004815 524 SLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPS-----RNGQILRRHGDV 597 (729)
Q Consensus 524 ~~~~iG~p~~~~~~~v~d~~-g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~-----~~g~~~y~TGDl 597 (729)
...++|+|++ ++++|+|++ |+++|.|++ |||+|++..+..+ |+++++.|++.|..++. .++++||+|||+
T Consensus 392 ~~~~~G~p~~-~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDl 467 (480)
T 3t5a_A 392 SLISYMLPRS-PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANG-YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDS 467 (480)
T ss_dssp EEECEECCSS-SEEEEEETTTTEECCTTBC--EEEEEESTTSCCC-BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEE
T ss_pred eeeecCcccC-CEEEEEcCCCCcCCCCCCE--EEEEEeCCccccc-cccCcchhHHHHhhhhccccCCCCCCCeeeccce
Confidence 3468999999 999999977 799999997 9999976655443 46788999998864332 235679999999
Q ss_pred EEEecCceEEEEcc
Q 004815 598 FERTSGGYYRAHGR 611 (729)
Q Consensus 598 ~~~~~dG~l~~~GR 611 (729)
|+++ ||+|+|+||
T Consensus 468 g~~d-dG~l~~~GR 480 (480)
T 3t5a_A 468 GFVT-DGKMFIIGR 480 (480)
T ss_dssp EEEE-TTEEEECC-
T ss_pred eeEE-CCEEEEeCC
Confidence 9997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=3.8e-56 Score=476.32 Aligned_cols=317 Identities=17% Similarity=0.162 Sum_probs=267.5
Q ss_pred CCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCCh
Q 004815 356 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLG 435 (729)
Q Consensus 356 ~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~ 435 (729)
.+++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 4789999999999999999999999999999999899999999999999999999999999999999999999875443
Q ss_pred hhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecccccccccccc
Q 004815 436 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI 515 (729)
Q Consensus 436 ~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~ 515 (729)
+++.|+++++|++.++|++++.|++... ...++++||.+++||+++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567899999999999999999988753 34568999999999999999999988753 589999999999987655
Q ss_pred cCCcccccccccccCCCCCcEEEEEcCCCCccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeC
Q 004815 516 TGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 595 (729)
Q Consensus 516 ~~~~~~~~~~~~iG~p~~~~~~~v~d~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TG 595 (729)
.... .....+++|.|.||+++.+.+ . |||++.+.... .+||+||
T Consensus 190 ~~~~-~~~~~g~~~~~~pgv~~~~~~----------~--Gel~~~g~~~~-----------------------~g~~~TG 233 (358)
T 4gs5_A 190 LKAL-NGPEASELYVFLPGIQYGVDE----------R--GCLHISGAVTN-----------------------GQTVQTN 233 (358)
T ss_dssp EEEC-SSTTCCSCEEECTTCEEEECT----------T--SEEEEESGGGT-----------------------TCCEEEE
T ss_pred cccc-cccccceeeccCCCeEEEecC----------c--CceEEeccccc-----------------------CcceecC
Confidence 4333 334457889999999887643 2 89998643221 2399999
Q ss_pred ceEEEecCceEEEEcccCCeeecCceeechHHHHHHHh--cCCCCeeeeEEE-eecCCCCCceeEEEEEEecCCCCCCCC
Q 004815 596 DVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN--AVDSNVLETAAI-GVPPPDGGPEQLTIVVVFKDSNYTPPD 672 (729)
Q Consensus 596 Dl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~--~~~p~V~~a~Vv-~~~~~~~g~~~l~a~vv~~~~~~~~~~ 672 (729)
|+|++|+|| ++|+||+||+||++|+||+|.|||++|. ..||+|.+|+|+ +.+|+..| +.++|+|+... +
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~-~----- 305 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAM-P----- 305 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCC-C-----
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCC-C-----
Confidence 999999999 6778999999999999999999998773 158999999887 56677777 78888887554 1
Q ss_pred hHHHHHHHHHHHHhhCCCCCccceEEeCCCCCCCCCChhhHHHHHHHHHhh
Q 004815 673 LNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 723 (729)
Q Consensus 673 ~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidR~~L~~~~~~~ 723 (729)
+...+.|+++|+++||.||+|+.|+++++||+|+||||||++|++++++.
T Consensus 306 -~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 306 -EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp -HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred -CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 33445566678899999999999999999999999999999999988764
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.1e-49 Score=437.18 Aligned_cols=325 Identities=20% Similarity=0.210 Sum_probs=257.7
Q ss_pred cCCC-CCeeEEEeccCCCCCCceEEeCCchHHHHHHHH---HhhCCCCCCCEEEEccCcchhhhH-HHHHHHhhcCceEE
Q 004815 353 EQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 427 (729)
Q Consensus 353 ~~~~-~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~L~~G~~lv 427 (729)
..++ ++++||+|||||||.||||+++|+++.+...+. ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3456 899999999999999999999999997766554 345689999999999998765554 56788999999999
Q ss_pred EeCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC--CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeecc
Q 004815 428 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 505 (729)
Q Consensus 428 l~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 505 (729)
+.+. .++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAAA-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCCS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCCC-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 8764 4788999999999999999999999999876432222 378999999999999999999998877 58999999
Q ss_pred cccccccccccCCcccccccccccCCCCCcEEEEEc-CCCCccCCCCCceeEEEeeccccCCCccccccccccccccccc
Q 004815 506 GGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (729)
Q Consensus 506 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d-~~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p 584 (729)
|+||+++.++..... ....+|.|.+++.++|+| ++|+++|.|+. |||+|++.. +..| |
T Consensus 239 G~TE~~~~~~~~~~~---~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~~-------------~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFECQ---EQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTLD-------------REMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEECT---TCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEESS-------------CCSS---C
T ss_pred cchhhcCCeeEEecC---CCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEeccC-------------cCCc---e
Confidence 999995432222211 122367788899999999 78999999997 999996421 1122 1
Q ss_pred CCCCceeEEeCceEEEecCc------e---EEEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004815 585 SRNGQILRRHGDVFERTSGG------Y---YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 655 (729)
Q Consensus 585 ~~~g~~~y~TGDl~~~~~dG------~---l~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~ 655 (729)
..||+|||+|++++|| + ++|+||.||+||++|++|+|.|||++|. +||+|.+++|++.+++..+ +
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 1299999999999998 5 6999999999999999999999999995 9999999999999887666 8
Q ss_pred eEEEEEEecCCCCCCCC----hHHHHHHHHHHHHhhCCCC-CccceEEeCC--CCCCCCCChhhHH
Q 004815 656 QLTIVVVFKDSNYTPPD----LNQLRMSFNSAVQKKLNPL-FKVSHVVPLP--SLPRTATNKVMRR 714 (729)
Q Consensus 656 ~l~a~vv~~~~~~~~~~----~~~l~~~l~~~l~~~L~~~-~~P~~i~~v~--~lP~t~~GKidR~ 714 (729)
.++|+|++++ .. .+ .++++++|++.| +.+ ++|..+++++ +||+|+ ||++|.
T Consensus 372 ~l~a~v~~~~-~~--~~~~~~~~~l~~~l~~~l----~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 372 EMIVEVELSD-LS--TDNYIELEKIRRDIIRQL----KDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEECT-TC--CCCHHHHHHHHHHHHHHH----HHHHSSCCEEEEECTTCCC--------CE
T ss_pred EEEEEEEEcC-cc--ccchhhHHHHHHHHHHHH----HHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 8999999873 32 33 455666555444 455 7888899988 999999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.3e-48 Score=429.78 Aligned_cols=330 Identities=20% Similarity=0.171 Sum_probs=261.0
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH---hhCCCCCCCEEEEccCcc-hhhhHHHHHHHhhcCceEEE
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLG-WMMGPWLVYASLLNGASIAL 428 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~i~~~L~~G~~lvl 428 (729)
...++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..+++ |..+...++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 45678999999999999999999999999877654433 368899999999999985 56666778899999999988
Q ss_pred eCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC--CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccc
Q 004815 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (729)
Q Consensus 429 ~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 506 (729)
.+. .++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 765 4788999999999999999999999999875322222 257999999999999999999998777 588999999
Q ss_pred ccccccc-cccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCccccccccccccccccc
Q 004815 507 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (729)
Q Consensus 507 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p 584 (729)
+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+. |||+|++. ++..| |
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9997432 2221111 1112455778999999995 6999999997 99999642 11223 2
Q ss_pred CCCCceeEEeCceEEEecC-ceE-----EEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 585 SRNGQILRRHGDVFERTSG-GYY-----RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 585 ~~~g~~~y~TGDl~~~~~d-G~l-----~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
..||+|||+|++++| |++ +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 129999999999999 997 899999999999999999999999995 9999999999998876665 7899
Q ss_pred EEEEecC--CCC-CCCChHHHHHHHHHHHHhhCCCCC-ccceEEeC--CCCCCCCCChhhHHH
Q 004815 659 IVVVFKD--SNY-TPPDLNQLRMSFNSAVQKKLNPLF-KVSHVVPL--PSLPRTATNKVMRRV 715 (729)
Q Consensus 659 a~vv~~~--~~~-~~~~~~~l~~~l~~~l~~~L~~~~-~P~~i~~v--~~lP~t~~GKidR~~ 715 (729)
++|++++ ... ...+.+++++ .|+++|+.|+ +|..|.++ ++||+|++||++|+.
T Consensus 379 a~v~~~~~~~~~~~~~~~~~l~~----~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAALAR----ELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHHHHH----HHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred EEEEECCcccccchhhHHHHHHH----HHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 9998763 100 0122344555 4555666654 77777766 699999999999975
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=4.1e-48 Score=426.99 Aligned_cols=328 Identities=20% Similarity=0.163 Sum_probs=261.8
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH---hhCCCCCCCEEEEccCc-chhhhHHHHHHHhhcCceEEE
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 428 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~i~~~L~~G~~lvl 428 (729)
...++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|+ .|..+...++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 45678999999999999999999999999877654432 36889999999999998 566666778899999999987
Q ss_pred eCCCCChhhHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCC--CCCCccEEEeecCCCCHhHHHHHHhccCCCCeeeccc
Q 004815 429 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 506 (729)
Q Consensus 429 ~~~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~--~l~sLr~v~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 506 (729)
.+. .++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 664 4788999999999999999999999999875322222 247899999999999999999988777 488999999
Q ss_pred ccccccc-cccCCcccccccccccCCCCCcEEEEEcC-CCCccCCCCCceeEEEeeccccCCCccccccccccccccccc
Q 004815 507 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 584 (729)
Q Consensus 507 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~v~d~-~g~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p 584 (729)
+||+++. +....... ...++.|.+++.++|+|+ +|+++|.|+. |||+|++. +++.| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 22222111 112566778999999995 5999999997 99999641 12223 2
Q ss_pred CCCCceeEEeCceEEEec-CceE-----EEEcccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEE
Q 004815 585 SRNGQILRRHGDVFERTS-GGYY-----RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 658 (729)
Q Consensus 585 ~~~g~~~y~TGDl~~~~~-dG~l-----~~~GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~ 658 (729)
..||+|||+|++++ ||++ +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12999999999999 6996 899999999999999999999999995 9999999999998876666 7899
Q ss_pred EEEEecCCCCCC--CChHHHHHHHHHHHHhhCCCC-CccceEEeC--CCCCCCCCChhhHHH
Q 004815 659 IVVVFKDSNYTP--PDLNQLRMSFNSAVQKKLNPL-FKVSHVVPL--PSLPRTATNKVMRRV 715 (729)
Q Consensus 659 a~vv~~~~~~~~--~~~~~l~~~l~~~l~~~L~~~-~~P~~i~~v--~~lP~t~~GKidR~~ 715 (729)
|+|++++ +... .+.+++++ .|+++|+.| .+|..|.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~-~~~~~~~~~~~l~~----~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCP-ETAPDTAAIQVAKQ----ALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCT-TTTTCHHHHHHHHH----HHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECC-CccchhhhHHHHHH----HHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999876 4300 12244444 566666666 488888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=7.1e-32 Score=290.35 Aligned_cols=238 Identities=14% Similarity=0.039 Sum_probs=180.6
Q ss_pred cCCCCCeeEEEeccCCCCCCceEEeCCchHHHHHHHHH---hhCCCCCCCEEEEccCc-chhhhHHHHHHHhhcCceEEE
Q 004815 353 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 428 (729)
Q Consensus 353 ~~~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~i~~~L~~G~~lvl 428 (729)
..+++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++.+|+ .|+.+....+.++..|+ +++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 34788999999999999999999999999998887543 55688999999999999 88888887778899999 444
Q ss_pred eCCCCChh-----------------------hHHHHHHHcCCcEEEecHHHHHHHHhcCCCCCCCCCCccEEEeecCCCC
Q 004815 429 YNGSPLGS-----------------------GFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 485 (729)
Q Consensus 429 ~~~~~~~~-----------------------~l~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~~l~sLr~v~~gGe~l~ 485 (729)
.. ..++. .++++|+++++|++.++|+++..|++.......++++||.+++|||+++
T Consensus 166 ~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 166 SI-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CC-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred Cc-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 43 24555 6777999999999999999999998763322345688999999999999
Q ss_pred HhHHHHHH-hccCCCCeeecccccccccccccCCcccccccccccCC------CCCcEEEEEcC-CCCccCCCCCceeEE
Q 004815 486 VDEYLWLM-GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP------AMGCKLFILGN-DGCPIPQNVPGMGEL 557 (729)
Q Consensus 486 ~~~~~~~~-~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~v~d~-~g~~~p~g~~giGel 557 (729)
+++.+++. +.+++++++|.||+||+++++.... ..++|+| +++++++|+|+ +|+++|.|++ |||
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl 316 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLL------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNV 316 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceeccc------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEE
Confidence 99999999 8887899999999999886542211 1158999 99999999998 8999999997 999
Q ss_pred EeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEecC---------ceEEEEcccCCeeecCce
Q 004815 558 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG---------GYYRAHGRADDTMNLGGI 621 (729)
Q Consensus 558 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~d---------G~l~~~GR~d~~iki~G~ 621 (729)
+|++.. +..|.. .|+|||++++.+. ..+..++|.|+++||+|.
T Consensus 317 ~vt~l~-------------~~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLS-------------PWAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEE-------------TTEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcC-------------cccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 996421 112211 5999999988542 346778999999999885
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.58 E-value=1.6e-15 Score=131.65 Aligned_cols=96 Identities=19% Similarity=0.316 Sum_probs=73.5
Q ss_pred cccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCCh---HHHHHHHHHHHHh
Q 004815 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL---NQLRMSFNSAVQK 686 (729)
Q Consensus 610 GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~---~~l~~~l~~~l~~ 686 (729)
.|.|||||++|+||+|.|||++|. +||+|.+++|++++++.++ +.++++|+..+ +. ..+. +++.+.++++++.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~-~~-~~~~~~~~~l~~~i~~~l~~ 76 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQ-LF-TDDYGRLQALTREITRQLKD 76 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECT-TC-CCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEee-cc-ccccchhhhhHHHHHHHHHH
Confidence 499999999999999999999995 9999999999999988777 88999998887 44 2332 4566677777766
Q ss_pred hCCCCCccceEEeC--CCCCCCCCChhhH
Q 004815 687 KLNPLFKVSHVVPL--PSLPRTATNKVMR 713 (729)
Q Consensus 687 ~L~~~~~P~~i~~v--~~lP~t~~GKidR 713 (729)
.+. +|..+.++ ++||+| +||++|
T Consensus 77 ~~g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 77 EIL---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHS---SCCEEEEECTTCSCCC----CCC
T ss_pred HhC---CccceEEEcCCeecCC-CCCcch
Confidence 652 33344444 589999 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.56 E-value=7.3e-15 Score=127.19 Aligned_cols=97 Identities=20% Similarity=0.317 Sum_probs=75.8
Q ss_pred cccCCeeecCceeechHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCC---CChHHHHHHHHHHHHh
Q 004815 610 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP---PDLNQLRMSFNSAVQK 686 (729)
Q Consensus 610 GR~d~~iki~G~ri~~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~---~~~~~l~~~l~~~l~~ 686 (729)
||.||+||++|++|+|.|||++|. .||+|.++++++++++.++ +.+++++++ + +... .+.+++.+.|++++++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~-~~p~v~~~~~v~v~~~~~~-e~l~~~ve~-~-~~~~~~~~~~~~l~~~i~~~l~~ 76 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVEL-S-QLFTDDYGRLQALTREITRQLKD 76 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEE-C-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHH-hCCCcCCcEEEEEEcCCCc-eEEEEEEEE-c-CccccchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999996 8999999998888877655 889999998 5 4311 1346788888888887
Q ss_pred hCCCCCccceEEeCC--CCCCCCCChhhHH
Q 004815 687 KLNPLFKVSHVVPLP--SLPRTATNKVMRR 714 (729)
Q Consensus 687 ~L~~~~~P~~i~~v~--~lP~t~~GKidR~ 714 (729)
.+. ++..+.+++ +||+| +||++|.
T Consensus 77 ~~~---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 77 EIL---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHS---SCCEEEEECTTCSCCC----CCCE
T ss_pred hhC---CceEEEEECCCCccCC-CCceEEE
Confidence 653 333677777 89999 9999873
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.76 E-value=2.8e-07 Score=101.48 Aligned_cols=162 Identities=12% Similarity=0.011 Sum_probs=91.6
Q ss_pred CCCccE--EEeecCCCCHhHHHHHHhccCCCCee-ecccccccccccccCCccccccccccc-CCCCCc-EEEEE--cCC
Q 004815 471 WSSIRC--FGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFS-TPAMGC-KLFIL--GND 543 (729)
Q Consensus 471 l~sLr~--v~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~iG-~p~~~~-~~~v~--d~~ 543 (729)
+++|+. ++++|. + ..-..+++..+++.+++ ..|+.||+-+.+-.. +..+ ....+ ..+|+. -...+ |+.
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~-p~~~--~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVT-PRLS--PEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEEEECCC-TTSC--TTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceeeeeecC-CCCC--ccccceeecCCcEEEEEEecccc
Confidence 577753 344552 2 22224444445667877 999999964432111 1111 11111 122332 12233 322
Q ss_pred C---------CccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEec----CceEEEEc
Q 004815 544 G---------CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS----GGYYRAHG 610 (729)
Q Consensus 544 g---------~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~----dG~l~~~G 610 (729)
+ ..|..|+. +||+|+... | +. -|++||++++.. ...+.|+|
T Consensus 376 ~~~~~~~v~l~eve~G~~--YelviTt~~-G--------------L~---------RYr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEE--YEVVITNYA-G--------------LY---------RYRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTCE--EEEEEESTT-S--------------CS---------SEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCCe--EEEEEeecc-c--------------ee---------eEEcCCEEEEecccCCCcEEEEEe
Confidence 1 24567775 899985331 1 00 399999999864 26799999
Q ss_pred ccCCeeecCceeechHHHHHHHhcC-----CC--CeeeeEEEeecCCCCCceeEEEEEEecC
Q 004815 611 RADDTMNLGGIKVSSVEIERICNAV-----DS--NVLETAAIGVPPPDGGPEQLTIVVVFKD 665 (729)
Q Consensus 611 R~d~~iki~G~ri~~~eIE~~L~~~-----~p--~V~~a~Vv~~~~~~~g~~~l~a~vv~~~ 665 (729)
|.|+++++.|.++...+||++|... .. .|.|-.+..- ..... ..-+.|+..+.
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d-~~~~p-~hyv~~wE~~~ 489 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYID-VSTDP-GHYAIFWEISG 489 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEE-CSSSS-CEEEEEEEESS
T ss_pred ecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecC-CCCCC-CcEEEEEeecC
Confidence 9999999999999999999998632 22 3666655542 22211 23444456654
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.71 E-value=3.5e-07 Score=101.10 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=39.3
Q ss_pred EEeCceEEEec----CceEEEEcccCCeeecCceeechHHHHHHHh
Q 004815 592 RRHGDVFERTS----GGYYRAHGRADDTMNLGGIKVSSVEIERICN 633 (729)
Q Consensus 592 y~TGDl~~~~~----dG~l~~~GR~d~~iki~G~ri~~~eIE~~L~ 633 (729)
|++||++++.. ...+.|+||.+++++++|.+|.+.+||++|.
T Consensus 412 Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~ 457 (609)
T 4b2g_A 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD 457 (609)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence 99999999973 5889999999999999999999999999996
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.68 E-value=1.3e-07 Score=104.56 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=81.5
Q ss_pred CCC---ccEEEeecCCCCHhHHHHHHhccCCCCee-ecccccccccccccCCcccccccccccC-CCCCc-EEEEEcCC-
Q 004815 471 WSS---IRCFGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST-PAMGC-KLFILGND- 543 (729)
Q Consensus 471 l~s---Lr~v~~gGe~l~~~~~~~~~~~~~~~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~-~~~v~d~~- 543 (729)
+++ +.+++.||- ..-..+++..+++.+++ ..|+.||+-+.+-. .+..+ ....|. .+++. -...++.+
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~-~p~~~--~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINL-DPLCK--PEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECS-CTTSC--GGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeecc-CCCCC--cccCceeecCCcEEEEEEeccc
Confidence 566 555566663 22234444445667887 89999996433211 11111 011121 12332 23344321
Q ss_pred ---C-----CccCCCCCceeEEEeeccccCCCcccccccccccccccccCCCCceeEEeCceEEEec----CceEEEEcc
Q 004815 544 ---G-----CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS----GGYYRAHGR 611 (729)
Q Consensus 544 ---g-----~~~p~g~~giGel~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~----dG~l~~~GR 611 (729)
. ..|..|+. +||+|+... | + --|++||++++.. ...+.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~~-G--------------L---------~RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNFA-G--------------L---------YRMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECSS-S--------------C---------CSEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeecc-c--------------e---------eeEEcCCEEEEcccCCCCcEEEEEEe
Confidence 1 23446665 899885321 1 0 0399999999975 478999999
Q ss_pred cCCeeecCceeechHHHHHHHhcC
Q 004815 612 ADDTMNLGGIKVSSVEIERICNAV 635 (729)
Q Consensus 612 ~d~~iki~G~ri~~~eIE~~L~~~ 635 (729)
.+++++++|.+|...+||++|...
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a 447 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQA 447 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC
T ss_pred cCCEEEeeeeECCHHHHHHHHHHH
Confidence 999999999999999999999643
No 42
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.16 E-value=4.6e-08 Score=109.43 Aligned_cols=129 Identities=12% Similarity=-0.018 Sum_probs=98.8
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCC---CCchhheeeeeecCCCCC----C-CCCccCC
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDL---PFSFHQLLYYGCYKDFGP----D-PPAWIPD 87 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r---~~~~~~~~f~~~~~~~~~----~-~~~~~~~ 87 (729)
.++++..+...+|.++|+++++...+ +||+|||+++++.+++.| ++|+|++||..++..... + .....+.
T Consensus 375 lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~i~~~l~~~r~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
T 2jgp_A 375 LAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARDLSRNPLFDTVFTFQNSTEEVMTLPECTLAPFMT 454 (520)
T ss_dssp EEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHHHHHHTCCCCCTTSCSSCSEEEEEECCCCSCCCCSSEEEEECSS
T ss_pred eeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCCCCCCCCcEEEEEEEecCCCccccCCCceeEEeec
Confidence 46677777888999999999998877 999999999999999876 478999999998765310 0 0001111
Q ss_pred hhh--hhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcccceecCCceeecC
Q 004815 88 PEA--AKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRE 155 (729)
Q Consensus 88 ~~~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (729)
... ..++||.+.+...++++...+ |+. ++|++.+++++.++|.++|+.+ .+.|+..+..
T Consensus 455 ~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l----~~~p~~~l~~ 516 (520)
T 2jgp_A 455 DETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASI----VQNPHIRLGE 516 (520)
T ss_dssp CSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHH----HHCTTCBGGG
T ss_pred CCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHH----HhCccCchhh
Confidence 112 578898888777778888888 988 9999999999999999999986 3444444443
No 43
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=97.54 E-value=2e-06 Score=95.41 Aligned_cols=131 Identities=6% Similarity=-0.095 Sum_probs=84.1
Q ss_pred HHcCCChHH--HHHHHHHHHHHHHhcCC--CCccchHHHHHh---hcCCCC---CCchhheeeeeecCCCCCC-----CC
Q 004815 18 EALGIPSKL--AEQLHEKLAEIVNTHGA--ATPATWQNITTH---ILSPDL---PFSFHQLLYYGCYKDFGPD-----PP 82 (729)
Q Consensus 18 ~~~~~~~~~--~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~---~l~~~r---~~~~~~~~f~~~~~~~~~~-----~~ 82 (729)
.++++..++ ..+|.++|+++++...+ +| ++||+++++ +|++.| ..|+|++||++++....+. ..
T Consensus 300 lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~i~~~~~~l~~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~ 378 (493)
T 4hvm_A 300 VVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHDVVDLAVDLGVVTPPRVAARWDVAVHLCRNAPSSSLTRGERT 378 (493)
T ss_dssp EEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHTTSCBTTBTTGGGCEEECC---------------
T ss_pred eEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHhhhCcccCCCCCcceeEEEEEEecCCcccccccccc
Confidence 455666667 78999999999998877 99 999999999 888765 5789999998886553100 00
Q ss_pred CccCCh----------------------hhhhhCc---HHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHH
Q 004815 83 AWIPDP----------------------EAAKVTN---VGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKT 136 (729)
Q Consensus 83 ~~~~~~----------------------~~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~ 136 (729)
+..++. ...++|| +.+.+...++++...+ |+. ++| +.+++++.++|.+
T Consensus 379 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~~~~ 452 (493)
T 4hvm_A 379 LAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDGLDA 452 (493)
T ss_dssp -----CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHHHHH
T ss_pred ccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHHHHH
Confidence 000000 0114577 7777777788888888 988 899 9999999999999
Q ss_pred HHhhcccceecCCceeecCCCCC
Q 004815 137 VLNEMSTSFSVPPQCILRENPNG 159 (729)
Q Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~ 159 (729)
+|+++ .+.|+..+...++.
T Consensus 453 ~L~~~----~~~p~~~l~~l~ll 471 (493)
T 4hvm_A 453 AMAQA----VADPSAPLPHSTVD 471 (493)
T ss_dssp HHHHH----HHCTTSBCCC----
T ss_pred HHHHH----HhCCCCccccCCCC
Confidence 99997 35556666555543
No 44
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=97.54 E-value=1.2e-06 Score=95.32 Aligned_cols=119 Identities=6% Similarity=-0.130 Sum_probs=90.0
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC--CCccchHHHHHhhcCCCC-CCchhheeeeeecCCCC--CCCCC-ccCChhhh
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDL-PFSFHQLLYYGCYKDFG--PDPPA-WIPDPEAA 91 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~Pfe~lv~~l~~~r-~~~~~~~~f~~~~~~~~--~~~~~-~~~~~~~~ 91 (729)
.++++..++..+|.++|+++++...+ +||++||+++++.++..+ .+|+|++||+.+++... ++... ........
T Consensus 279 lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~i~~~l~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (436)
T 1l5a_A 279 LPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFESPHFADCQTELKVLASGS 358 (436)
T ss_dssp EEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCTTCCBCCCSEEEEECCCCCCCTTCEEEEEEEEECC
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHhcccccCCCccceEEEeeccCccccCCCeeEEEecCCCC
Confidence 46777778888999999999998877 999999999999998876 57999999999876531 00000 00000111
Q ss_pred hhCcHHHHHH-HhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhcc
Q 004815 92 KVTNVGKLLQ-TRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMS 142 (729)
Q Consensus 92 ~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 142 (729)
.. ||.+.+. ..++++...+ |+. ++|.+.+++++.++|..+|+++.
T Consensus 359 ~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~ 405 (436)
T 1l5a_A 359 AE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLL 405 (436)
T ss_dssp CC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHH
Confidence 23 6666665 3567788888 988 99999999999999999999874
No 45
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=95.30 E-value=0.00051 Score=75.12 Aligned_cols=118 Identities=10% Similarity=0.001 Sum_probs=79.9
Q ss_pred HHcCCChHHHHHHHHHHHHHHHhcCC-CCccchHHHHHhhcCCC-----CC-CchhheeeeeecCCCC----CC-CCCcc
Q 004815 18 EALGIPSKLAEQLHEKLAEIVNTHGA-ATPATWQNITTHILSPD-----LP-FSFHQLLYYGCYKDFG----PD-PPAWI 85 (729)
Q Consensus 18 ~~~~~~~~~~~~f~~~l~~~~~~~~~-~hq~~Pfe~lv~~l~~~-----r~-~~~~~~~f~~~~~~~~----~~-~~~~~ 85 (729)
.++++..+.+.+|.++|+++++...+ .||++||+ +++.|+.. +. ...++++|+++..... ++ .....
T Consensus 310 lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~~ 388 (466)
T 2xhg_A 310 YPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYD-ILKHVTLPENRGSLSFRVQPEVTFNYLGQFDADMRTELFTRSPY 388 (466)
T ss_dssp EEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHH-HHHHTSCGGGSTTCCCCCCCSEEEEEEEECCTTCSSSSCEECTT
T ss_pred ccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccc-eeeecccccccccccccCCCeEEEeecCcccccccCCceecccc
Confidence 45666666778999999999988755 89999999 56777653 22 2334577776642110 00 00000
Q ss_pred CC-------------hhhhhhCcHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhChHHHHHHHHhhc
Q 004815 86 PD-------------PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (729)
Q Consensus 86 ~~-------------~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 141 (729)
+. ......++|.+.+...++++...+ |+. ++|++.+|+++.++|.++|+.+
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l 453 (466)
T 2xhg_A 389 SGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAI 453 (466)
T ss_dssp CTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHH
Confidence 00 011136677776655677788888 988 9999999999999999999986
No 46
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.20 E-value=2.2 Score=45.42 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=78.2
Q ss_pred CCCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEe
Q 004815 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVS 264 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vv~~LA~l~aGa~~vp 264 (729)
..++.+|.+....| .+|. ...+|.+.+...+..+++.+...|+.++|++..+++-+ ...+..+++.+..|+..++
T Consensus 87 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35677776554432 2332 35789999998888888888889999999999999853 4445567888999999998
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 265 IADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 265 ldp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
+++. ..+++...+++.++.+++..+.
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHH
Confidence 7654 7888999999999999988764
No 47
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=89.60 E-value=2.5 Score=45.13 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=77.7
Q ss_pred CCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEec
Q 004815 190 SLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVSI 265 (729)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vv~~LA~l~aGa~~vpl 265 (729)
.++.+|.+....| .+|. ...+|.+.+...+..+++.+...|++++|++..+++-+ ...+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 5667775554432 2333 35789999998888888888889999999999998863 44455678889999999988
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 266 ADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 266 dp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
++. ..+++...+++.++++++....
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 664 7888999999999999988764
No 48
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=89.06 E-value=2.2 Score=45.42 Aligned_cols=98 Identities=17% Similarity=0.051 Sum_probs=78.1
Q ss_pred CCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC--CHHHHHHHHHHHHcCCEEEecCC
Q 004815 192 DDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM--NVNSVVIYLAIVLAGYIVVSIAD 267 (729)
Q Consensus 192 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~--s~~~vv~~LA~l~aGa~~vpldp 267 (729)
+.+|.+....| .+|. ...+|.+.+...+..+++.+...|+.++|++..+++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSG-TTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSG-TTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSC-SSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCC-cCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 77887665443 2332 3578999999999999998989999999999999874 44556677889999999998765
Q ss_pred CCCHHHHHHHHHhcCceEEEEecc
Q 004815 268 SFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
. ..+++...+++.++++++....
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHH
Confidence 4 6688899999999999888764
No 49
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=83.82 E-value=0.023 Score=60.79 Aligned_cols=100 Identities=9% Similarity=-0.060 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHhcCC--CCccch-----HHHHHhhcCCCCCCchhheeeeeecCCCCCCCCCccCCh--------hh-
Q 004815 27 AEQLHEKLAEIVNTHGA--ATPATW-----QNITTHILSPDLPFSFHQLLYYGCYKDFGPDPPAWIPDP--------EA- 90 (729)
Q Consensus 27 ~~~f~~~l~~~~~~~~~--~hq~~P-----fe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~~~~~~~~~--------~~- 90 (729)
+.+|.++++++++...+ +||++| |+++++.+++ ..|+ +++|. |+...+. ....++. ..
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~--~~pl-~~~~~--n~~~~~~-~~~~~~~~~~~~~~~~~~ 370 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPP--GLPP-LVFCT--DATSFPT-MRTPPGLEIEDIKGQFYC 370 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGGGGGCCCS--SSCC-CEEEE--CCCCCCS-CCCCTTCEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHHHhcccCC--CCCc-eEEEe--cCCcCCC-CCCCCCceeEeeeccccc
Confidence 35789999999998877 999994 9999999874 3455 56542 3221000 0000100 11
Q ss_pred hhhCcHHHH-HHHhccccccCCCCCCCCCHHHHHHHHhhChHHHHHHHHhhc
Q 004815 91 AKVTNVGKL-LQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (729)
Q Consensus 91 ~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 141 (729)
...++|.+. +...++++...+|+. + .+++++.++|.++|+++
T Consensus 371 ~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l 413 (422)
T 1q9j_A 371 SISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTV 413 (422)
T ss_dssp BSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHh
Confidence 345666655 444555555555766 3 78899999999999986
No 50
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=74.20 E-value=13 Score=38.31 Aligned_cols=99 Identities=9% Similarity=-0.034 Sum_probs=68.9
Q ss_pred CCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCCEEEec
Q 004815 190 SLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVSI 265 (729)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vv~~LA~l~aGa~~vpl 265 (729)
.++.+|.+....| ..|. ...+|.+.+...+..+++.+...|+.++|++..+++-+ .--+...++++..|+.+++.
T Consensus 89 ~~~~~a~i~~TSG-TTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESGG-TTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEECC----CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECCC-CCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4666676655443 2333 34679999988888777778888999999999999862 23334445558899966664
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCceEEEEecc
Q 004815 266 ADSFASL-----------------------EISARLRISKAKAIFTQDL 291 (729)
Q Consensus 266 dp~~~~~-----------------------~l~~~l~~~~~~~vl~~~~ 291 (729)
+ +.+. ++...+++.++.+++....
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps 214 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPP 214 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHH
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHH
Confidence 4 3333 6666889999999988764
No 51
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=74.09 E-value=8.4 Score=42.31 Aligned_cols=100 Identities=13% Similarity=0.052 Sum_probs=72.2
Q ss_pred CCCeeEEEeccCCCCCCceEEeCCchHHHHHH---HHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCC
Q 004815 356 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAA---DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS 432 (729)
Q Consensus 356 ~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~ 432 (729)
|+.+|++.+..+.++ ..+|++.+...+. ......++.++|++...++-+... +..+++.+..|+..+..+..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCc
Confidence 344555544444333 3578877654433 333456999999998888877653 44567999999999998877
Q ss_pred CChhhHHHHHHHcCCcEEEecHHHHHHH
Q 004815 433 PLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (729)
Q Consensus 433 ~~~~~l~~~i~~~~vt~~~~~P~~l~~l 460 (729)
...+.+...++..++.+++.....+..+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7778899999999999999887766554
No 52
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=71.57 E-value=40 Score=36.13 Aligned_cols=98 Identities=19% Similarity=0.234 Sum_probs=73.2
Q ss_pred CCCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCCEEEec
Q 004815 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN-SVVIYLAIVLAGYIVVSI 265 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~-~vv~~LA~l~aGa~~vpl 265 (729)
..|+.+|++.-..| ..|. ...+|.+.+...+..+.. ..|+.++|++...+|-... .+..+++.+..|+..+..
T Consensus 160 ~~~~d~a~i~~TSG-TTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 160 FNLDDIASIMFTSG-TTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CCTTSEEEEEECCT-TTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEECCC-CCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46788998776553 2222 357899988776655543 4589999999999886533 334467888999998887
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 266 ADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 266 dp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
+ ....+.+...+++.+++++.....
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~ 260 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQ 260 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHH
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHH
Confidence 6 467889999999999999988764
No 53
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=70.53 E-value=24 Score=38.43 Aligned_cols=100 Identities=15% Similarity=-0.014 Sum_probs=72.8
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++....+ .+..+|++.+...+ .......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCc
Confidence 4566776543211 24568887765443 3334557999999999888877654 3456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~l~~l 460 (729)
....+.+..++++.++.+++..+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 77778899999999999999887765543
No 54
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=70.22 E-value=22 Score=38.84 Aligned_cols=103 Identities=14% Similarity=-0.013 Sum_probs=73.2
Q ss_pred CCCCeeEEEeccC-CCCCCceEEeCCchHHHH---HHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeC
Q 004815 355 PVEAFTNILFSSG-TTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 430 (729)
Q Consensus 355 ~~~~~a~i~~TSG-STG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~ 430 (729)
.|+.+|++....+ ..+. .-.+|++.+... +.......++.++|++...++-+..+ +..+++.+..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccC
Confidence 4567776654321 1121 235677766443 33444557999999999888877654 345679999999999988
Q ss_pred CCCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 004815 431 GSPLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (729)
Q Consensus 431 ~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l 460 (729)
.....+.+..++++.+++++...+.....+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 777778899999999999999887765544
No 55
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=68.60 E-value=17 Score=39.29 Aligned_cols=95 Identities=15% Similarity=0.002 Sum_probs=71.8
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHHH---HHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA---DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++. .+..+|++.+...+. ......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 467777653 124688887755443 334456999999999888877653 4556799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 459 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~l~~ 459 (729)
....+++..++++-++.++...+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7777889999999999999988776554
No 56
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=67.50 E-value=51 Score=35.78 Aligned_cols=98 Identities=15% Similarity=0.005 Sum_probs=72.3
Q ss_pred CCCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHH-HHHHHHHcCCEEE
Q 004815 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN--SVV-IYLAIVLAGYIVV 263 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~--~vv-~~LA~l~aGa~~v 263 (729)
..|+.+|++.-..| ..|. ...+|.+.+...+..... ..++.++|++...+|-+.. +.. .+++.+..|+..+
T Consensus 179 ~~~~d~a~i~~TSG-TTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 179 VKSSDVAFLQLSGG-STGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCTTSEEEEEECCC-SSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CCcCceEEEEeCCC-cCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 46788888765543 2222 357899988776655443 3478999999999886643 333 5788999999998
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 264 SIADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 264 pldp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
..+ ....+.+...+++.+++++.....
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~ 281 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPP 281 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHH
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHH
Confidence 765 467888999999999999988764
No 57
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=66.52 E-value=49 Score=35.95 Aligned_cols=98 Identities=15% Similarity=0.082 Sum_probs=71.9
Q ss_pred CCCCCeEEEEeecCCCCC--CceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HH-HHHHHHHcCCEEE
Q 004815 189 RSLDDIVIRWCDEGDGGL--PVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS--VV-IYLAIVLAGYIVV 263 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~--vv-~~LA~l~aGa~~v 263 (729)
..|+.+|++.-..| ..| +...+|.+.+...+...+.. .|+.++|++...+|-+..+ .. .+++.+..|+..+
T Consensus 188 ~~~~d~a~i~~TSG-TTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 188 TPADEVAFFQLSGG-STGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CCTTSEEEEEECCC---CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CCccceEEEEECCC-cccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 45788888765543 222 23578999988776665543 5899999999998865433 32 4788999999988
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 264 SIADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 264 pldp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
..+. .....+...+++.+++.+.....
T Consensus 264 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 264 MAPN-PEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHH
T ss_pred ECCC-CCHHHHHHHHHHHCCCEEEechH
Confidence 7754 57788888999999999988764
No 58
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=66.20 E-value=31 Score=37.14 Aligned_cols=98 Identities=13% Similarity=0.013 Sum_probs=70.0
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHHH---HHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA---DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++.. .+ +..+|++.+...+. ......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 15 ~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 4667776542 11 25688887654433 333457999999999888877664 4456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEe--cHHHHHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGV--VPSIVRTW 460 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~--~P~~l~~l 460 (729)
...++++..++++.+++.+.. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 777788999999999999888 55554443
No 59
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=66.13 E-value=19 Score=39.32 Aligned_cols=97 Identities=14% Similarity=0.035 Sum_probs=70.8
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHH---HHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++.. .+| -.+|++.+... +.......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 5677776532 222 35788776443 33334557999999998888877653 4556799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 459 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~l~~ 459 (729)
...++.+...+++.++.++...+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 7777889999999999999887655443
No 60
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=65.59 E-value=26 Score=38.25 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH--HHHHHHHHHcCCEEEecCC
Q 004815 192 DDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS--VVIYLAIVLAGYIVVSIAD 267 (729)
Q Consensus 192 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~--vv~~LA~l~aGa~~vpldp 267 (729)
+.+|++....| .+|. ...+|.+.+...+......+...++.++|++..++|-+..+ ...+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~TSG-TTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~- 268 (548)
T 2d1s_A 192 EQVALIMNSSG-STGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT- 268 (548)
T ss_dssp TCEEEEECCSS-CSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-
T ss_pred CCEEEEEeCCC-CCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-
Confidence 78888775543 2222 35789998877666555443336889999999988866433 33467777 999988875
Q ss_pred CCCHHHHHHHHHhcCceEEEEecc
Q 004815 268 SFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
.+..+.+...+++.++++++....
T Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~ 292 (548)
T 2d1s_A 269 KFDEETFLKTLQDYKCTSVILVPT 292 (548)
T ss_dssp CCCHHHHHHHHHHTTEEEEEECHH
T ss_pred CCCHHHHHHHHHHcCCcEEEecHH
Confidence 567889999999999999988764
No 61
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=64.34 E-value=41 Score=35.72 Aligned_cols=105 Identities=11% Similarity=0.023 Sum_probs=73.7
Q ss_pred CCCCeeEEEecc--CCCCCCceEEeCCchHHHHHHHH---HhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEe
Q 004815 355 PVEAFTNILFSS--GTTGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY 429 (729)
Q Consensus 355 ~~~~~a~i~~TS--GSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~ 429 (729)
.|+.+|++.... +.+| ....+|.+.+...+... ....+. ++|++...++-+..+ +..+++.+..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 567787765542 2222 34678888775544433 344565 899998887777654 44567999999999988
Q ss_pred CC---CCChhhHHHHHHHcCCcEEEecHHHHHHHHhc
Q 004815 430 NG---SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKST 463 (729)
Q Consensus 430 ~~---~~~~~~l~~~i~~~~vt~~~~~P~~l~~l~~~ 463 (729)
+. ....+++..++++.++.+++..+.....+.+.
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 65 33456899999999999999988877766543
No 62
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=63.39 E-value=36 Score=37.37 Aligned_cols=101 Identities=9% Similarity=-0.016 Sum_probs=72.4
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHHHH---HHhhC-CCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAAD---AWCHM-DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 430 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~~---~~~~~-~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~ 430 (729)
.|+.+|++.... .| ....+|.+.+...+.. ..... ++.++|++...++-+..+ +..+++.+..|+..+..+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 467777765421 12 2356888776544333 33344 999999999888877654 345679999999999988
Q ss_pred CCCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 004815 431 GSPLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (729)
Q Consensus 431 ~~~~~~~l~~~i~~~~vt~~~~~P~~l~~l 460 (729)
....++.+..++++.++.+++..+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 777778899999999999999877665544
No 63
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=61.71 E-value=33 Score=37.76 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=70.6
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHH---HHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++.... .| ....+|.+.+... +.......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 578888776532 12 2466888776543 33444567999999999888877664 3456799999999998887
Q ss_pred CCChhhHHHHHHHcCCcEEEecH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVP 454 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P 454 (729)
...++++...+++.++.++...+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 77778899999999999988754
No 64
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=61.03 E-value=34 Score=38.32 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=69.9
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHHH---HHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA---DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.++.+|++.. +..+| .+..+|.+.+...+. ......++.++|++...++-+..+ +..+++++..|+..+.++.
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 4577777643 22222 245688887654443 333456999999999888887664 4456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVP 454 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P 454 (729)
...++.+...+++.++.++++..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77788899999999999888753
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=60.59 E-value=41 Score=37.73 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=71.4
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHH---HHHHHh-hCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWC-HMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 430 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~ 430 (729)
.|+.+|++.. +..+| .+..+|.+.+... +..... ..++.++|++...++-+... +..+++++..|+..+.++
T Consensus 95 ~pd~~Al~~~-~~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEE-cCCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 5677777644 22222 2356888776443 333444 68999999999999888664 345679999999999988
Q ss_pred CCCChhhHHHHHHHcCCcEEEecHH
Q 004815 431 GSPLGSGFAKFVQDAKVTMLGVVPS 455 (729)
Q Consensus 431 ~~~~~~~l~~~i~~~~vt~~~~~P~ 455 (729)
....++.+...|++-++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7777888999999999999987653
No 66
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=60.16 E-value=38 Score=37.07 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=70.5
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++. . +-.+|++.+...+ .......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 466777653 1 2357887765443 3333456999999998888877654 3456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRTW 460 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~l~~l 460 (729)
....+.+..++++.++.+++..+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 77778899999999999999887655443
No 67
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=59.22 E-value=36 Score=36.64 Aligned_cols=80 Identities=20% Similarity=0.101 Sum_probs=62.2
Q ss_pred EeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEEe
Q 004815 376 PWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGV 452 (729)
Q Consensus 376 ~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~ 452 (729)
.+|.+.+...+ .......++.++|++...++-+..+ +..+++.+..|+..+..+.....+++..++++.++.++..
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 57887765443 3334556999999999888877654 4456799999999999887777788999999999999998
Q ss_pred cHHH
Q 004815 453 VPSI 456 (729)
Q Consensus 453 ~P~~ 456 (729)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7653
No 68
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=56.35 E-value=36 Score=36.81 Aligned_cols=95 Identities=11% Similarity=-0.000 Sum_probs=69.0
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++.. | ..+|++.+...+ .......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 36 ~p~~~A~~~~--~-------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD--T-------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS--S-------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC--C-------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4667776521 1 347877665443 3334557999999998888877654 3456799999999998887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 459 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~l~~ 459 (729)
...++++..++++.++.+++..+.....
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 133 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQN 133 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhH
Confidence 7777889999999999998887665443
No 69
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=55.48 E-value=72 Score=34.90 Aligned_cols=101 Identities=11% Similarity=0.038 Sum_probs=72.6
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++....+ .+-.+|++.+...+ .......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 24 ~p~~~a~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLNKE-----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPL-IQAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEETT-----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEcCC-----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhH-HHHHHHHHHhCcEEEEecC
Confidence 5677777654411 24568888765443 3344557999999999888877663 4456799999999998865
Q ss_pred CC---ChhhHHHHHHHcCCcEEEecHHHHHHHH
Q 004815 432 SP---LGSGFAKFVQDAKVTMLGVVPSIVRTWK 461 (729)
Q Consensus 432 ~~---~~~~l~~~i~~~~vt~~~~~P~~l~~l~ 461 (729)
.. ..+.+..+++..++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 2356788899999999999888777653
No 70
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=54.74 E-value=90 Score=34.46 Aligned_cols=98 Identities=13% Similarity=0.004 Sum_probs=71.1
Q ss_pred CCCCCeEEEEeecCCCCC--CceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCC--HHHHH-HHHHHHHcCCEEE
Q 004815 189 RSLDDIVIRWCDEGDGGL--PVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVV-IYLAIVLAGYIVV 263 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~--~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vv-~~LA~l~aGa~~v 263 (729)
..|+.+|++.-..| ..| +...+|.+.+...+...... .++.++|++...++-+ ..+.+ .+++.+..|+..+
T Consensus 181 ~~~~~~a~ii~TSG-STG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v 256 (617)
T 3rg2_A 181 SPADEVAYFQLSGG-TTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256 (617)
T ss_dssp CCTTSEEEEEECCC-SSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred CCCCCeEEEEECCC-cCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence 35788888765543 222 23578999887766555443 4789999999998854 44443 5788899999988
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 264 SIADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 264 pldp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
..+. .....+...+++.+++++.....
T Consensus 257 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~ 283 (617)
T 3rg2_A 257 LAAD-PSATLCFPLIEKHQVNVTALVPP 283 (617)
T ss_dssp ECSS-CCHHHHHHHHHHTTCCEEEECHH
T ss_pred EeCC-CCHHHHHHHHHHhCCcEEEcchH
Confidence 7754 56778888999999999888764
No 71
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=54.38 E-value=49 Score=36.19 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=68.4
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++. . +-.+|.+.+...+ .......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 467777653 1 2357887765443 3334557999999999888877664 3456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSI 456 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~ 456 (729)
....+.+..++++.++.++......
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7777889999999999998887654
No 72
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=53.24 E-value=40 Score=36.28 Aligned_cols=99 Identities=14% Similarity=0.074 Sum_probs=71.5
Q ss_pred CCCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCCEEEec
Q 004815 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN-SVVIYLAIVLAGYIVVSI 265 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~-~vv~~LA~l~aGa~~vpl 265 (729)
..|+.+|++.-..| .+|. ...+|++.+...+...+. ..++.++|++..++|-+.. .+..+++.+..|+..+.+
T Consensus 141 ~~~~d~a~i~~TSG-TTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 141 VKGDENFYIIYTSG-STGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCCeEEEEECCC-CCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 45788888765543 2222 357899988776554443 4589999999999986643 245578889999999988
Q ss_pred CCC--CCHHHHHHHHHhcCceEEEEecc
Q 004815 266 ADS--FASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 266 dp~--~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
++. ...+.+...+++.++++++....
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 244 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPS 244 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHH
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHH
Confidence 653 46778889999999999888764
No 73
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=51.94 E-value=69 Score=34.35 Aligned_cols=99 Identities=9% Similarity=0.045 Sum_probs=72.2
Q ss_pred CCCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCCEEEec
Q 004815 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN-SVVIYLAIVLAGYIVVSI 265 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~-~vv~~LA~l~aGa~~vpl 265 (729)
..++.+|++....| .+|. ...+|.+.+...+..++ ...++.++|++...++-+.. .+..+++++..|+..+.+
T Consensus 140 ~~~~~~a~i~~TSG-TTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 140 VKEHETFYIIYTSG-STGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CCTTSEEEEEEECC-TTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCCeEEEEECCC-CCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35678888765543 2333 35789998877665544 34588999999999886643 345578899999998887
Q ss_pred CCC--CCHHHHHHHHHhcCceEEEEecc
Q 004815 266 ADS--FASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 266 dp~--~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
+.. ...+.+...+++.++++++....
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 243 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPS 243 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHH
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHH
Confidence 653 46778888999999999888764
No 74
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=51.71 E-value=50 Score=35.61 Aligned_cols=95 Identities=17% Similarity=0.034 Sum_probs=69.8
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++.. | +...+|.+.+...+ .......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF-CCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCc
Confidence 4677776643 1 12468888765443 3344557999999999888877654 3456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSIV 457 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~l 457 (729)
....+++..++++-++.++...+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 77778899999999999988766543
No 75
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=46.39 E-value=1.4e+02 Score=31.74 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=70.0
Q ss_pred CCCCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH--HHHHHHHHHHcCCEEEe
Q 004815 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN--SVVIYLAIVLAGYIVVS 264 (729)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~--~vv~~LA~l~aGa~~vp 264 (729)
..|+.+|++.-..| ..|. ...+|.+.+...+..++..+ ++.++|++...++-... ++..+++.+..|+..+.
T Consensus 152 ~~~~d~a~i~~TSG-TTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 152 ADDGDPALVVYTSG-TTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CCTTSEEEEEEECC-SSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCCeEEEEeCCC-CcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46778888766543 2333 35789999988777666554 78999999988886533 34467899999999887
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecc
Q 004815 265 IADSFASLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 265 ldp~~~~~~l~~~l~~~~~~~vl~~~~ 291 (729)
.+ ....+.+...+ ..++..++....
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~ 252 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPT 252 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHH
Confidence 74 46667777777 678888887764
No 76
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=44.51 E-value=36 Score=40.25 Aligned_cols=95 Identities=15% Similarity=0.024 Sum_probs=70.4
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHH---HHHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++.- .+| ..+|++.+... +.......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEeeCC
Confidence 5777876542 222 35787766543 33334557999999999888877553 4456799999999999987
Q ss_pred CCChhhHHHHHHHcCCcEEEecHHHH
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVVPSIV 457 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~P~~l 457 (729)
...++++...+++.++.+++..+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 77788899999999999998876544
No 77
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=37.39 E-value=1.5e+02 Score=31.97 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=66.0
Q ss_pred CCCCeeEEEeccCCCCCCc--eEEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEe
Q 004815 355 PVEAFTNILFSSGTTGEPK--AIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY 429 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PK--gV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~ 429 (729)
.|+.+|++.. .|..+..+ .-.+|++.+...+ .......++ ++|++...++-+..+ +..+++.+..|+..+..
T Consensus 33 ~p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEec
Confidence 5677776644 23333332 3567887764433 333344577 799998888877664 34567999999999998
Q ss_pred CCCCChhhHHHHHHHcCCcEEEecH
Q 004815 430 NGSPLGSGFAKFVQDAKVTMLGVVP 454 (729)
Q Consensus 430 ~~~~~~~~l~~~i~~~~vt~~~~~P 454 (729)
+.....+.+..++++.++.+++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 8777778899999999999877653
No 78
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=36.32 E-value=90 Score=31.38 Aligned_cols=72 Identities=24% Similarity=0.204 Sum_probs=45.8
Q ss_pred CCCCCCEEEEECCCCH------HHHHHHHHHH-HcCCEEEecCCC---------CC---HHHHHHHHHhcCceEEEEecc
Q 004815 231 GLDKGSAIAIDMPMNV------NSVVIYLAIV-LAGYIVVSIADS---------FA---SLEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 231 Gv~~gd~Vai~~~~s~------~~vv~~LA~l-~aGa~~vpldp~---------~~---~~~l~~~l~~~~~~~vl~~~~ 291 (729)
-+++||+|+|++|.+. +.+-.-+..+ ..|.-++.-..- .+ .+++..++.|-.++.|++..+
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999752 3333333333 346665543221 12 234677888899999999987
Q ss_pred eecCCccccch
Q 004815 292 IIRGDKSIPLY 302 (729)
Q Consensus 292 ~~~~~~~~~~~ 302 (729)
.+...+.++.+
T Consensus 88 G~g~~rlL~~L 98 (327)
T 4h1h_A 88 GFNSNQLLPYL 98 (327)
T ss_dssp CSCGGGGGGGC
T ss_pred chhHHHHhhhc
Confidence 76655555543
No 79
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=36.26 E-value=76 Score=34.11 Aligned_cols=79 Identities=10% Similarity=-0.066 Sum_probs=59.8
Q ss_pred EEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCChhhHHHHHHHcCCcEEE
Q 004815 375 IPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLG 451 (729)
Q Consensus 375 V~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~ 451 (729)
-.+|.+.+...+ .......++.++|++...++-+... +..+++.+..|+..+..+....++.+..+++..++.+++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 347887765443 3334557999999998877776553 345679999999999988777778899999999999887
Q ss_pred ecH
Q 004815 452 VVP 454 (729)
Q Consensus 452 ~~P 454 (729)
...
T Consensus 107 ~~~ 109 (521)
T 3l8c_A 107 AIE 109 (521)
T ss_dssp ESS
T ss_pred ecC
Confidence 654
No 80
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=36.03 E-value=1.2e+02 Score=32.81 Aligned_cols=86 Identities=9% Similarity=-0.040 Sum_probs=63.1
Q ss_pred eEEeCCchHHHHHH---HHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCCCCC-------hhhHHHHHH
Q 004815 374 AIPWTNATPFKAAA---DAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL-------GSGFAKFVQ 443 (729)
Q Consensus 374 gV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~~~~-------~~~l~~~i~ 443 (729)
+-.+|++.+...+. ......++.++|++...++-+..+ +..+++.+..|+..+..+.... ...+..+++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 35678887654443 334557999999999888877654 3456799999999998865443 467888999
Q ss_pred HcCCcEEEecHHHHHHH
Q 004815 444 DAKVTMLGVVPSIVRTW 460 (729)
Q Consensus 444 ~~~vt~~~~~P~~l~~l 460 (729)
..++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999877655443
No 81
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=34.30 E-value=1.4e+02 Score=30.09 Aligned_cols=65 Identities=25% Similarity=0.238 Sum_probs=45.7
Q ss_pred HHHHcCC-CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 004815 226 ALNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (729)
Q Consensus 226 ~L~~~Gv-~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~ 290 (729)
.+.+.|. ++|+.|.+....+=.-...-+++.+.|.-++.+-|...+..-..+++..++++++++.
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 3445664 8898865555566666777777888898766555554444556678899999999875
No 82
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=32.79 E-value=1.2e+02 Score=30.64 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=60.1
Q ss_pred CCCeEEEEeecCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH-HHHHHHHHHHcCCEEEecCC
Q 004815 191 LDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN-SVVIYLAIVLAGYIVVSIAD 267 (729)
Q Consensus 191 pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~-~vv~~LA~l~aGa~~vpldp 267 (729)
.|.+|++.-..| ..|. ...+|++.|...+..++. ..+++++|++..++|-+.. -+..++..+.+|+..+..++
T Consensus 36 ~d~~a~Il~TSG-TTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSG-STGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HTCSEEEEEEEC-TTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCEEEEECCc-ccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 466777654432 2333 357999998776655544 4589999999999886633 33445666777888777665
Q ss_pred CCCHHHHHHHHHhcCceEEEEec
Q 004815 268 SFASLEISARLRISKAKAIFTQD 290 (729)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~vl~~~ 290 (729)
... ....+++.++..+....
T Consensus 112 ~~~---~~~~i~~~~~t~~~~~P 131 (358)
T 4gs5_A 112 TAN---PLAGLDHADFDFVAMVP 131 (358)
T ss_dssp CSC---TTTTCSSCCCSEEEECH
T ss_pred ccc---HHHHHHHhCCeEEEcCh
Confidence 432 23456677777776655
No 83
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=32.33 E-value=1.3e+02 Score=27.02 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=43.9
Q ss_pred hHHHHHHHhcCCCCeeeeEEEe-ecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHHHhhCCCCCccceEEeCCC
Q 004815 625 SVEIERICNAVDSNVLETAAIG-VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPS 702 (729)
Q Consensus 625 ~~eIE~~L~~~~p~V~~a~Vv~-~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~ 702 (729)
-+|+++.|. ..++|..|-|-. .|........--.++.+++ |. ..+..+ . .|++.+....|. +.|..+.++++
T Consensus 92 egELartI~-~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~-g~-~l~~~q-~-~I~~LVa~SV~g-L~~enVtVvdq 164 (171)
T 1yj7_A 92 EQDIERLLS-KIPGVIDCSVSLNVNNNESQPSSAAVLVISSP-EV-NLAPSV-I-QIKNLVKNSVDD-LKLENISVVIK 164 (171)
T ss_dssp HHHHHHHHT-TSTTEEEEEEEEEC-------CEEEEEEEECT-TC-CCGGGH-H-HHHHHHHHHSTT-CCGGGEEEEEE
T ss_pred HHHHHHHHH-cCCCeeEEEEEEECCCCCCCCceEEEEEEeCC-CC-CCcHhH-H-HHHHHHHHhcCC-CCcccEEEEeC
Confidence 679999994 999999998744 4433222122233444555 55 455554 2 488788888875 67877777654
No 84
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=32.28 E-value=1e+02 Score=23.25 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=30.1
Q ss_pred hHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 004815 625 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAV 684 (729)
Q Consensus 625 ~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l 684 (729)
..++++.| +..|+|.+|..+.- +.-+++-+..+ +.+++.+.+.+.+
T Consensus 15 ~~~~~~~l-~~~peV~~~~~vtG------~~d~l~~v~~~-------d~~~l~~~~~~~l 60 (83)
T 2zbc_A 15 EDEVFERL-KSMSEVTEVHVVYG------VYDIVVKVEAD-------SMDKLKDFVTNTI 60 (83)
T ss_dssp HHHHHHHH-TTCTTEEEEEECSS------SCSEEEEEECS-------SHHHHHHHHHHTG
T ss_pred HHHHHHHH-hCCCCeEEEEEEec------cCCEEEEEEEC-------CHHHHHHHHHHHh
Confidence 36888989 59999999987642 23455555543 4567776654434
No 85
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=31.33 E-value=1.1e+02 Score=31.32 Aligned_cols=62 Identities=15% Similarity=0.028 Sum_probs=41.6
Q ss_pred HHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCC-----CCHHHHHHHHHhcC--ceEEEEe
Q 004815 225 YALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS-----FASLEISARLRISK--AKAIFTQ 289 (729)
Q Consensus 225 ~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~-----~~~~~l~~~l~~~~--~~~vl~~ 289 (729)
..|...++++||.|.+-.+...... -++...|+.++.++.+ ...+.+...+...+ +++|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 3455568899999988877665543 3456789876655432 36788888774444 7777643
No 86
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=30.29 E-value=3.3e+02 Score=25.18 Aligned_cols=93 Identities=14% Similarity=-0.024 Sum_probs=52.3
Q ss_pred CCEEEEccCc--chhhhHHHHHHHhh-cCceEEEeCCCCChhhHHHHHHHcCCcEEEe------cHHH--HHHHHhcCCC
Q 004815 398 ADIVAWPTNL--GWMMGPWLVYASLL-NGASIALYNGSPLGSGFAKFVQDAKVTMLGV------VPSI--VRTWKSTNCI 466 (729)
Q Consensus 398 ~d~~l~~~~~--~~~~~~~~i~~~L~-~G~~lvl~~~~~~~~~l~~~i~~~~vt~~~~------~P~~--l~~l~~~~~~ 466 (729)
..+++..++- .|+.|...+-..|- .|-.++-......++.+.+.+.++++.++.+ ++++ ++.+++....
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~ 171 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNE 171 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHH
Confidence 3455544443 48888755444444 5555554444456778999999999987777 2222 2222222111
Q ss_pred CCCCCCCccEEEeecCCCCHhHHHHH
Q 004815 467 DGYDWSSIRCFGSTGEASNVDEYLWL 492 (729)
Q Consensus 467 ~~~~l~sLr~v~~gGe~l~~~~~~~~ 492 (729)
... ...++ +++||.+++++..+.+
T Consensus 172 ~~~-~~~v~-v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 172 EKL-RDSVK-CMFGGAPVSDKWIEEI 195 (215)
T ss_dssp TTC-GGGSE-EEEESSSCCHHHHHHH
T ss_pred cCC-CCCCE-EEEECCCCCHHHHHHh
Confidence 110 01233 7889999997755443
No 87
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=29.20 E-value=1.3e+02 Score=30.77 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=47.1
Q ss_pred CCCCCCEEEEECCCCH------HHHHHHHHHHH-cCCEEEecCCC---------CCHH---HHHHHHHhcCceEEEEecc
Q 004815 231 GLDKGSAIAIDMPMNV------NSVVIYLAIVL-AGYIVVSIADS---------FASL---EISARLRISKAKAIFTQDL 291 (729)
Q Consensus 231 Gv~~gd~Vai~~~~s~------~~vv~~LA~l~-aGa~~vpldp~---------~~~~---~l~~~l~~~~~~~vl~~~~ 291 (729)
-+++||+|+|++|.+. +.+-.-+..++ .|.-++.-... .+.+ ++..++.|-.++.|++..+
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 5899999999999874 23333344443 57666543221 1233 4666777888999999988
Q ss_pred eecCCccccch
Q 004815 292 IIRGDKSIPLY 302 (729)
Q Consensus 292 ~~~~~~~~~~~ 302 (729)
.+...+.++.+
T Consensus 119 Gyga~rlLp~L 129 (371)
T 3tla_A 119 GDNSNSLLPFL 129 (371)
T ss_dssp CSCGGGGGGGS
T ss_pred cccHHHHHhhc
Confidence 76666666654
No 88
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=27.94 E-value=1.8e+02 Score=29.29 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=46.6
Q ss_pred CCCCCCEEEEECCCCH------HHHHHHHHHHH-cCCEEEecCC---------CCCH---HHHHHHHHhcCceEEEEecc
Q 004815 231 GLDKGSAIAIDMPMNV------NSVVIYLAIVL-AGYIVVSIAD---------SFAS---LEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 231 Gv~~gd~Vai~~~~s~------~~vv~~LA~l~-aGa~~vpldp---------~~~~---~~l~~~l~~~~~~~vl~~~~ 291 (729)
-+++||+|+|++|.+. +.+-.-+..++ .|.-++.-.. ..+. +++..++.|-.++.|++..+
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4789999999999883 23333344443 5766654221 1122 34666778889999999988
Q ss_pred eecCCccccch
Q 004815 292 IIRGDKSIPLY 302 (729)
Q Consensus 292 ~~~~~~~~~~~ 302 (729)
.+...+.++.+
T Consensus 89 G~g~~rlL~~l 99 (336)
T 3sr3_A 89 GMNSNSLLPYI 99 (336)
T ss_dssp CSCGGGGGGGS
T ss_pred cccHHHHhhhc
Confidence 76655665554
No 89
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=27.38 E-value=1.7e+02 Score=29.43 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=47.2
Q ss_pred CCCCCCEEEEECCCCH------HHHHHHHHHHH-cCCEEEecCCC---------CCH---HHHHHHHHhcCceEEEEecc
Q 004815 231 GLDKGSAIAIDMPMNV------NSVVIYLAIVL-AGYIVVSIADS---------FAS---LEISARLRISKAKAIFTQDL 291 (729)
Q Consensus 231 Gv~~gd~Vai~~~~s~------~~vv~~LA~l~-aGa~~vpldp~---------~~~---~~l~~~l~~~~~~~vl~~~~ 291 (729)
-+++||+|+|++|.+. +.+-.-...++ .|.-++.-... .+. +++..++.|-.++.|++..+
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4789999999999874 23333344444 57666643221 123 34666778889999999988
Q ss_pred eecCCccccch
Q 004815 292 IIRGDKSIPLY 302 (729)
Q Consensus 292 ~~~~~~~~~~~ 302 (729)
.+...+.++.+
T Consensus 88 G~g~~rlL~~l 98 (331)
T 4e5s_A 88 GYNSNGLLKYL 98 (331)
T ss_dssp CSCGGGGGGGC
T ss_pred cccHHHHHhhc
Confidence 76666666654
No 90
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=27.04 E-value=2.1e+02 Score=28.84 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=51.1
Q ss_pred HHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 004815 221 WLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (729)
Q Consensus 221 ~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~ 290 (729)
+.+.....+.-+++|.+..|....+=.-+..-+++.++|.-++.+-|...+..-...++..++++++++.
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 3444444333368887777787778777888888899998777666665556667788999999999875
No 91
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=26.96 E-value=90 Score=23.79 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=30.4
Q ss_pred hHHHHHHHhcCCCCeeeeEEEeecCCCCCceeEEEEEEecCCCCCCCChHHHHHHHHHHH
Q 004815 625 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAV 684 (729)
Q Consensus 625 ~~eIE~~L~~~~p~V~~a~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l 684 (729)
..++++.| +..|.|.+|..+.- +.-+++-+..+ +.+++.+.+.+.+
T Consensus 15 ~~~~~~~l-~~~peV~e~~~vtG------~~D~ll~v~~~-------d~~~l~~~i~~~l 60 (83)
T 2cvi_A 15 EREVMEKL-LAMPEVKEAYVVYG------EYDLIVKVETD-------TLKDLDQFITEKI 60 (83)
T ss_dssp HHHHHHHH-HTSTTEEEEEECBS------SCSEEEEEEES-------SHHHHHHHHHTTG
T ss_pred HHHHHHHH-hCCCCeeEEEEEcc------cCCEEEEEEEC-------CHHHHHHHHHHHh
Confidence 36899999 59999999987752 23455555544 3567776554333
No 92
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=25.42 E-value=1.6e+02 Score=32.55 Aligned_cols=89 Identities=8% Similarity=-0.130 Sum_probs=64.7
Q ss_pred CCCCeeEEEeccCCCCCCceEEeCCchHHHHH---HHHHhhCCCCCCCEEEEccCcchhhhHHHHHHHhhcCceEEEeCC
Q 004815 355 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 431 (729)
Q Consensus 355 ~~~~~a~i~~TSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~L~~G~~lvl~~~ 431 (729)
.|+.+|++. . .-.+|++.+...+ .......++.++|++...++-+..+ +..+++.+..|+..+..+.
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRES-ITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCc
Confidence 567777653 1 1247887765443 3334456899999998888877654 3456799999999999887
Q ss_pred CCChhhHHHHHHHcCCcEEEec
Q 004815 432 SPLGSGFAKFVQDAKVTMLGVV 453 (729)
Q Consensus 432 ~~~~~~l~~~i~~~~vt~~~~~ 453 (729)
....+++..++++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 6667788999999999888744
No 93
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=21.92 E-value=1.7e+02 Score=29.24 Aligned_cols=77 Identities=13% Similarity=0.045 Sum_probs=48.9
Q ss_pred eecHHHHHHHHHH--HH-HHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCCCCHHHHHHHHHhcCceEE
Q 004815 210 SMTLKELRAEVWL--VA-YALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAI 286 (729)
Q Consensus 210 ~lTY~eL~~~a~~--lA-~~L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~v 286 (729)
.+++.+...-... .| +.|+..++++|++|.|...-+.-..+++++....|+-.+-++. +.++ ..+....++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEE
Confidence 5677664332222 22 3355669999999999987666677766666655666665554 3444 345667788777
Q ss_pred EEe
Q 004815 287 FTQ 289 (729)
Q Consensus 287 l~~ 289 (729)
+..
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 653
No 94
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=21.17 E-value=1.2e+02 Score=29.44 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.3
Q ss_pred HHHHHHHHHcCCCCCCEEEEECC
Q 004815 221 WLVAYALNALGLDKGSAIAIDMP 243 (729)
Q Consensus 221 ~~lA~~L~~~Gv~~gd~Vai~~~ 243 (729)
+.|+..|+++||++||.|.|...
T Consensus 18 ~~l~~~L~~LGi~~Gd~llVHsS 40 (268)
T 3ijw_A 18 KTITNDLRKLGLKKGMTVIVHSS 40 (268)
T ss_dssp HHHHHHHHHHTCCTTCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCEEEEEec
Confidence 45677899999999999999987
No 95
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=20.80 E-value=3.3e+02 Score=28.32 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=35.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHH-HHHHcCCEEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 004815 232 LDKGSAIAIDMPMNVNSVVIYL-AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (729)
Q Consensus 232 v~~gd~Vai~~~~s~~~vv~~L-A~l~aGa~~vpldp~~~~~~l~~~l~~~~~~~vl~~~ 290 (729)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.+ ..+.++..++. ++++|+.+.
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~ 175 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLET 175 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEES
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEEC
Confidence 6788888666555544443332 455678777777665 56666666654 567776553
No 96
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=20.71 E-value=2.6e+02 Score=30.12 Aligned_cols=76 Identities=14% Similarity=0.130 Sum_probs=45.4
Q ss_pred EEEEccCcchhhhH--HHHHHHhhcCceEEEeCCCCCh---hhHHHHHHHcCC-----cEEEecHHHHHHHHhcCCCCCC
Q 004815 400 IVAWPTNLGWMMGP--WLVYASLLNGASIALYNGSPLG---SGFAKFVQDAKV-----TMLGVVPSIVRTWKSTNCIDGY 469 (729)
Q Consensus 400 ~~l~~~~~~~~~~~--~~i~~~L~~G~~lvl~~~~~~~---~~l~~~i~~~~v-----t~~~~~P~~l~~l~~~~~~~~~ 469 (729)
+++..+|+.|-..+ +-+..+|.+|.++|+-+....| ..+.+++.+... +++.........|+++
T Consensus 165 VV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~eaGlP~gvv~vv~g~~~~~~~L~~~------ 238 (521)
T 4e4g_A 165 IGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEAGLPAGILNVVNGDKGAVDAILTH------ 238 (521)
T ss_dssp EEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHTTCCTTSEEECCCCHHHHHHHHTC------
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHhCCCcCeEEEEeCChHHHHHHHhC------
Confidence 55666777766554 5677899999999997755544 246677776532 2222223344555543
Q ss_pred CCCCccEEEeecCC
Q 004815 470 DWSSIRCFGSTGEA 483 (729)
Q Consensus 470 ~l~sLr~v~~gGe~ 483 (729)
+.++.|.+.|+.
T Consensus 239 --p~vd~I~FTGS~ 250 (521)
T 4e4g_A 239 --PDIAAVSFVGST 250 (521)
T ss_dssp --TTCCEEEEESCH
T ss_pred --CCcCEEEEECCH
Confidence 235556666643
No 97
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.16 E-value=4.1e+02 Score=26.81 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=40.4
Q ss_pred HHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEecCCC----CCHHHHHHHHHhc--CceEEEEec
Q 004815 227 LNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS----FASLEISARLRIS--KAKAIFTQD 290 (729)
Q Consensus 227 L~~~Gv~~gd~Vai~~~~s~~~vv~~LA~l~aGa~~vpldp~----~~~~~l~~~l~~~--~~~~vl~~~ 290 (729)
++..++++||.|.+..+....... ++...|+.++.++.+ ...+.+...++.. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 444467899999888887665543 334578776665532 4678888888764 566666654
Done!