Query 004816
Match_columns 729
No_of_seqs 597 out of 4616
Neff 9.7
Searched_HMMs 46136
Date Thu Mar 28 13:23:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1506 DAP2 Dipeptidyl aminop 100.0 6.7E-49 1.5E-53 441.8 58.2 581 79-713 4-619 (620)
2 PRK10115 protease 2; Provision 100.0 3.6E-46 7.8E-51 421.3 60.8 570 92-714 75-679 (686)
3 KOG2281 Dipeptidyl aminopeptid 100.0 6.5E-41 1.4E-45 344.3 32.2 546 139-709 145-866 (867)
4 KOG2100 Dipeptidyl aminopeptid 100.0 9.1E-34 2E-38 320.6 51.2 523 165-712 127-749 (755)
5 COG1770 PtrB Protease II [Amin 100.0 2E-32 4.4E-37 287.1 49.7 561 99-712 85-680 (682)
6 PF00326 Peptidase_S9: Prolyl 100.0 3.1E-32 6.8E-37 268.0 17.9 205 509-713 2-212 (213)
7 COG1505 Serine proteases of th 100.0 1.2E-27 2.7E-32 247.9 34.0 321 377-712 318-648 (648)
8 KOG2237 Predicted serine prote 100.0 1.6E-25 3.5E-30 233.1 37.0 491 196-712 143-707 (712)
9 PRK01029 tolB translocation pr 99.9 5.2E-23 1.1E-27 221.9 29.6 248 154-437 146-411 (428)
10 PRK01029 tolB translocation pr 99.9 6E-23 1.3E-27 221.5 29.2 264 90-398 138-415 (428)
11 PRK03629 tolB translocation pr 99.9 4.6E-22 9.9E-27 215.7 29.4 244 155-437 164-414 (429)
12 PRK05137 tolB translocation pr 99.9 4.3E-22 9.3E-27 217.3 29.2 245 154-437 165-420 (435)
13 PRK04043 tolB translocation pr 99.9 1.2E-21 2.5E-26 209.9 28.7 251 95-397 152-411 (419)
14 PRK04043 tolB translocation pr 99.9 1.6E-21 3.6E-26 208.7 29.5 230 165-436 169-407 (419)
15 PRK04792 tolB translocation pr 99.9 1.5E-21 3.3E-26 212.4 29.6 242 156-436 184-432 (448)
16 PRK03629 tolB translocation pr 99.9 3E-21 6.6E-26 209.2 30.2 251 99-396 163-416 (429)
17 PRK13604 luxD acyl transferase 99.9 4.1E-22 8.9E-27 198.8 21.4 213 462-692 13-247 (307)
18 PRK05137 tolB translocation pr 99.9 4.2E-21 9.1E-26 209.5 29.3 250 99-395 165-421 (435)
19 PRK02889 tolB translocation pr 99.9 5.4E-21 1.2E-25 207.6 29.4 243 155-436 164-410 (427)
20 PRK04792 tolB translocation pr 99.9 8.3E-21 1.8E-25 206.6 30.8 252 99-397 182-436 (448)
21 PRK00178 tolB translocation pr 99.9 5.5E-21 1.2E-25 209.0 28.7 243 155-436 163-413 (430)
22 PRK04922 tolB translocation pr 99.9 6.2E-21 1.3E-25 207.8 28.6 244 155-437 168-419 (433)
23 PRK04922 tolB translocation pr 99.9 2E-20 4.2E-25 203.9 30.0 253 99-398 167-423 (433)
24 PF00930 DPPIV_N: Dipeptidyl p 99.9 2.2E-21 4.8E-26 205.2 21.2 245 165-437 23-324 (353)
25 PRK02889 tolB translocation pr 99.9 2.5E-20 5.4E-25 202.3 29.9 249 100-398 164-415 (427)
26 PRK00178 tolB translocation pr 99.9 3.3E-20 7.2E-25 202.8 30.5 251 99-396 162-416 (430)
27 PRK10566 esterase; Provisional 99.9 7.3E-21 1.6E-25 192.3 21.1 226 472-711 12-249 (249)
28 PLN02442 S-formylglutathione h 99.9 3.5E-20 7.6E-25 189.4 20.8 241 457-712 17-282 (283)
29 PRK05077 frsA fermentation/res 99.9 8.6E-20 1.9E-24 195.7 24.5 231 457-711 167-413 (414)
30 PLN02298 hydrolase, alpha/beta 99.9 5.9E-20 1.3E-24 193.7 22.5 243 457-712 31-319 (330)
31 TIGR02821 fghA_ester_D S-formy 99.9 1E-19 2.2E-24 185.8 23.3 242 457-711 12-275 (275)
32 PF01738 DLH: Dienelactone hyd 99.8 1.4E-20 3E-25 185.7 15.4 204 472-711 1-218 (218)
33 PRK01742 tolB translocation pr 99.8 1.5E-18 3.3E-23 188.7 28.3 238 154-437 168-412 (429)
34 PF05448 AXE1: Acetyl xylan es 99.8 1.2E-19 2.6E-24 186.2 17.9 237 457-710 55-320 (320)
35 TIGR02800 propeller_TolB tol-p 99.8 5.3E-18 1.1E-22 185.3 28.6 244 154-436 155-404 (417)
36 PRK10749 lysophospholipase L2; 99.8 7.4E-19 1.6E-23 184.8 20.5 241 456-710 28-329 (330)
37 PRK01742 tolB translocation pr 99.8 8.2E-18 1.8E-22 183.0 28.7 246 99-398 168-416 (429)
38 PLN02385 hydrolase; alpha/beta 99.8 1.1E-18 2.3E-23 185.3 20.7 240 459-712 62-347 (349)
39 KOG1455 Lysophospholipase [Lip 99.8 9.7E-19 2.1E-23 168.9 17.9 238 458-710 27-312 (313)
40 PHA02857 monoglyceride lipase; 99.8 9.2E-19 2E-23 179.9 19.2 225 468-710 9-273 (276)
41 COG0412 Dienelactone hydrolase 99.8 3E-18 6.5E-23 168.7 21.5 215 459-712 3-235 (236)
42 PRK10162 acetyl esterase; Prov 99.8 4.9E-18 1.1E-22 176.7 24.1 230 458-712 57-317 (318)
43 TIGR02800 propeller_TolB tol-p 99.8 2.1E-17 4.6E-22 180.5 29.1 251 99-397 155-408 (417)
44 PLN02652 hydrolase; alpha/beta 99.8 4.3E-18 9.2E-23 181.0 20.8 237 459-712 111-389 (395)
45 PRK05371 x-prolyl-dipeptidyl a 99.8 3.6E-17 7.8E-22 186.6 27.8 207 513-725 271-535 (767)
46 COG1647 Esterase/lipase [Gener 99.8 4E-18 8.7E-23 156.2 14.8 203 493-708 16-242 (243)
47 COG0823 TolB Periplasmic compo 99.8 5.3E-17 1.2E-21 172.4 24.2 239 109-394 167-410 (425)
48 COG0823 TolB Periplasmic compo 99.8 5.2E-17 1.1E-21 172.4 23.5 230 165-432 173-405 (425)
49 KOG1552 Predicted alpha/beta h 99.8 1.5E-17 3.2E-22 157.8 16.0 220 457-712 34-254 (258)
50 KOG4391 Predicted alpha/beta h 99.7 2.5E-17 5.4E-22 149.3 14.9 231 455-712 51-284 (300)
51 COG3458 Acetyl esterase (deace 99.7 1.2E-17 2.6E-22 157.2 13.3 235 459-710 57-317 (321)
52 PRK11460 putative hydrolase; P 99.7 7.3E-17 1.6E-21 159.8 19.6 185 489-711 13-209 (232)
53 COG2267 PldB Lysophospholipase 99.7 6.7E-17 1.4E-21 165.2 19.2 235 459-712 10-296 (298)
54 TIGR00976 /NonD putative hydro 99.7 4.6E-16 9.9E-21 174.4 22.8 246 464-727 2-321 (550)
55 PRK10985 putative hydrolase; P 99.7 5.5E-16 1.2E-20 162.4 21.6 235 461-712 34-322 (324)
56 TIGR01840 esterase_phb esteras 99.7 1.3E-16 2.7E-21 156.5 15.2 189 474-674 1-197 (212)
57 PF00930 DPPIV_N: Dipeptidyl p 99.7 1.5E-15 3.3E-20 160.8 23.7 275 116-421 24-353 (353)
58 COG0657 Aes Esterase/lipase [L 99.7 1.2E-15 2.6E-20 159.3 20.7 223 468-709 60-309 (312)
59 PLN02511 hydrolase 99.7 1.6E-15 3.5E-20 162.1 21.3 239 459-712 72-367 (388)
60 PF06500 DUF1100: Alpha/beta h 99.7 5.1E-16 1.1E-20 159.7 16.2 229 457-711 164-410 (411)
61 PF12695 Abhydrolase_5: Alpha/ 99.7 1.2E-15 2.6E-20 140.1 15.1 145 494-689 1-145 (145)
62 PF02129 Peptidase_S15: X-Pro 99.7 4.7E-16 1E-20 158.6 13.5 209 468-689 1-271 (272)
63 TIGR03100 hydr1_PEP hydrolase, 99.7 7.3E-15 1.6E-19 150.0 21.6 231 459-708 3-273 (274)
64 TIGR03611 RutD pyrimidine util 99.7 2.7E-15 5.8E-20 152.0 17.9 202 490-708 11-256 (257)
65 TIGR03343 biphenyl_bphD 2-hydr 99.7 1.8E-15 4E-20 155.9 16.2 202 493-708 31-281 (282)
66 COG2945 Predicted hydrolase of 99.6 2.6E-15 5.6E-20 134.8 14.1 178 489-708 25-205 (210)
67 TIGR01607 PST-A Plasmodium sub 99.6 4.9E-15 1.1E-19 155.3 18.2 233 463-708 2-331 (332)
68 PF07859 Abhydrolase_3: alpha/ 99.6 1.5E-15 3.3E-20 149.2 12.7 183 495-691 1-210 (211)
69 COG0429 Predicted hydrolase of 99.6 1.7E-14 3.8E-19 141.6 19.3 233 462-712 53-342 (345)
70 PRK00870 haloalkane dehalogena 99.6 3.2E-14 6.9E-19 148.1 21.5 206 492-710 46-301 (302)
71 PF02230 Abhydrolase_2: Phosph 99.6 1.2E-14 2.5E-19 142.9 16.0 189 489-711 11-216 (216)
72 PLN02824 hydrolase, alpha/beta 99.6 4.3E-14 9.2E-19 146.6 20.1 207 493-710 30-294 (294)
73 KOG1515 Arylacetamide deacetyl 99.6 5.7E-14 1.2E-18 143.2 20.0 226 468-710 70-335 (336)
74 PLN03087 BODYGUARD 1 domain co 99.6 5.6E-14 1.2E-18 151.4 20.9 226 461-709 178-478 (481)
75 TIGR02240 PHA_depoly_arom poly 99.6 3.5E-14 7.6E-19 145.8 18.5 216 468-712 10-268 (276)
76 TIGR02427 protocat_pcaD 3-oxoa 99.6 1.6E-14 3.4E-19 145.5 15.7 199 491-707 12-250 (251)
77 PLN02872 triacylglycerol lipas 99.6 1.4E-14 3.1E-19 153.3 15.4 249 454-712 40-391 (395)
78 PRK11071 esterase YqiA; Provis 99.6 3E-14 6.5E-19 136.3 16.0 180 493-708 2-189 (190)
79 PRK03592 haloalkane dehalogena 99.6 5.9E-14 1.3E-18 145.6 19.3 215 468-711 15-290 (295)
80 TIGR03056 bchO_mg_che_rel puta 99.6 8E-14 1.7E-18 143.3 20.1 200 492-708 28-278 (278)
81 TIGR01250 pro_imino_pep_2 prol 99.6 7.2E-14 1.6E-18 144.0 19.5 203 492-708 25-288 (288)
82 PRK10673 acyl-CoA esterase; Pr 99.6 5.7E-14 1.2E-18 142.4 18.1 200 490-709 14-254 (255)
83 PLN02965 Probable pheophorbida 99.6 8.2E-14 1.8E-18 141.1 18.3 200 494-709 5-252 (255)
84 PF12697 Abhydrolase_6: Alpha/ 99.6 4.3E-14 9.4E-19 139.8 15.6 181 495-690 1-217 (228)
85 TIGR01392 homoserO_Ac_trn homo 99.6 1.5E-13 3.3E-18 145.9 20.6 231 468-708 14-351 (351)
86 PRK07581 hypothetical protein; 99.6 1.3E-13 2.7E-18 146.1 19.3 213 491-712 40-338 (339)
87 PLN00021 chlorophyllase 99.6 1.3E-13 2.9E-18 141.6 18.2 218 470-727 37-307 (313)
88 COG4946 Uncharacterized protei 99.6 2.5E-13 5.4E-18 136.4 19.2 243 154-438 50-304 (668)
89 PLN02679 hydrolase, alpha/beta 99.6 2.8E-13 6.1E-18 144.0 20.7 204 493-709 89-356 (360)
90 PF12715 Abhydrolase_7: Abhydr 99.6 7E-15 1.5E-19 148.4 7.9 213 457-685 87-343 (390)
91 PRK06489 hypothetical protein; 99.5 2.4E-13 5.1E-18 144.9 19.9 212 492-712 69-359 (360)
92 PLN02894 hydrolase, alpha/beta 99.5 3.3E-13 7.1E-18 145.0 21.0 209 491-715 104-390 (402)
93 PRK00175 metX homoserine O-ace 99.5 2.6E-13 5.6E-18 145.3 20.1 234 468-711 31-375 (379)
94 KOG4178 Soluble epoxide hydrol 99.5 3.9E-13 8.3E-18 132.7 19.4 208 490-711 42-321 (322)
95 TIGR03695 menH_SHCHC 2-succiny 99.5 1.5E-13 3.2E-18 138.1 17.0 198 493-707 2-250 (251)
96 PRK10349 carboxylesterase BioH 99.5 1.8E-13 3.9E-18 138.9 17.6 195 491-708 12-254 (256)
97 TIGR01249 pro_imino_pep_1 prol 99.5 2.4E-13 5.2E-18 141.6 18.9 220 462-711 8-306 (306)
98 TIGR01738 bioH putative pimelo 99.5 9E-14 2E-18 139.4 15.1 192 493-707 5-245 (245)
99 PF10503 Esterase_phd: Esteras 99.5 2.5E-13 5.3E-18 130.7 16.2 191 473-674 2-198 (220)
100 TIGR01836 PHA_synth_III_C poly 99.5 4E-13 8.6E-18 142.6 18.9 206 492-709 63-349 (350)
101 COG4099 Predicted peptidase [G 99.5 1E-13 2.3E-18 132.1 12.4 208 460-709 162-384 (387)
102 TIGR03101 hydr2_PEP hydrolase, 99.5 1.7E-12 3.6E-17 129.7 21.2 209 461-686 3-243 (266)
103 KOG1838 Alpha/beta hydrolase [ 99.5 2.1E-12 4.6E-17 132.0 22.1 243 458-711 93-389 (409)
104 COG0400 Predicted esterase [Ge 99.5 4.4E-13 9.5E-18 127.5 15.7 186 489-711 15-206 (207)
105 PRK14875 acetoin dehydrogenase 99.5 5.7E-13 1.2E-17 143.2 18.0 197 492-709 131-370 (371)
106 PRK03204 haloalkane dehalogena 99.5 2E-12 4.3E-17 133.2 20.6 198 493-707 35-285 (286)
107 PLN02578 hydrolase 99.5 1.3E-12 2.8E-17 138.8 17.8 196 493-708 87-353 (354)
108 KOG3043 Predicted hydrolase re 99.5 1.7E-12 3.6E-17 119.9 15.7 166 511-712 57-242 (242)
109 PF14583 Pectate_lyase22: Olig 99.4 2E-11 4.4E-16 124.3 23.7 301 91-429 38-383 (386)
110 COG3509 LpqC Poly(3-hydroxybut 99.4 2.4E-12 5.2E-17 124.3 16.0 229 460-712 37-309 (312)
111 PLN02211 methyl indole-3-aceta 99.4 7.3E-12 1.6E-16 127.7 20.8 201 490-706 16-266 (273)
112 PRK11126 2-succinyl-6-hydroxy- 99.4 3.3E-12 7.3E-17 128.3 17.4 191 493-709 3-241 (242)
113 KOG4667 Predicted esterase [Li 99.4 1.9E-12 4.1E-17 118.0 13.4 215 457-694 9-244 (269)
114 PF02897 Peptidase_S9_N: Proly 99.4 5E-11 1.1E-15 129.9 27.3 313 93-437 73-412 (414)
115 PRK08775 homoserine O-acetyltr 99.4 4.9E-12 1.1E-16 133.9 18.5 185 510-710 85-339 (343)
116 COG4946 Uncharacterized protei 99.4 2.1E-11 4.6E-16 122.8 21.5 249 80-374 217-509 (668)
117 PF08840 BAAT_C: BAAT / Acyl-C 99.4 1.1E-12 2.4E-17 127.6 12.3 159 553-712 4-212 (213)
118 PLN03084 alpha/beta hydrolase 99.4 2E-11 4.3E-16 129.3 21.2 216 468-708 113-382 (383)
119 PF14583 Pectate_lyase22: Olig 99.4 1.5E-10 3.3E-15 118.0 26.1 275 126-437 21-336 (386)
120 KOG1454 Predicted hydrolase/ac 99.4 1.7E-11 3.6E-16 126.9 19.7 207 490-711 56-325 (326)
121 KOG4627 Kynurenine formamidase 99.4 3.7E-12 8E-17 115.1 11.1 203 453-689 40-247 (270)
122 KOG4409 Predicted hydrolase/ac 99.4 8.8E-12 1.9E-16 123.4 14.7 207 490-709 88-363 (365)
123 PRK06765 homoserine O-acetyltr 99.3 7E-11 1.5E-15 125.4 20.2 230 470-709 41-387 (389)
124 PF12740 Chlorophyllase2: Chlo 99.3 4.5E-11 9.8E-16 116.3 17.0 175 475-689 7-205 (259)
125 PF03583 LIP: Secretory lipase 99.3 4.4E-11 9.4E-16 122.0 16.4 196 512-717 17-288 (290)
126 COG2936 Predicted acyl esteras 99.3 5.2E-11 1.1E-15 127.2 17.4 236 458-712 19-319 (563)
127 PRK10439 enterobactin/ferric e 99.3 1.2E-10 2.7E-15 124.1 20.0 218 458-707 180-406 (411)
128 PLN02980 2-oxoglutarate decarb 99.3 1.1E-10 2.4E-15 145.0 21.8 215 491-712 1370-1641(1655)
129 PF08450 SGL: SMP-30/Gluconola 99.3 8.7E-10 1.9E-14 110.9 22.7 216 91-338 2-221 (246)
130 COG3386 Gluconolactonase [Carb 99.2 2.1E-09 4.5E-14 109.4 24.4 242 91-376 27-278 (307)
131 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 1.2E-08 2.6E-13 105.8 31.1 244 148-433 36-283 (300)
132 PRK05855 short chain dehydroge 99.2 1.4E-10 2.9E-15 132.8 17.0 217 468-711 11-293 (582)
133 PF08538 DUF1749: Protein of u 99.2 9.3E-11 2E-15 116.2 13.2 210 491-708 32-303 (303)
134 TIGR03866 PQQ_ABC_repeats PQQ- 99.2 7.2E-09 1.6E-13 107.5 28.0 252 90-394 32-288 (300)
135 PF00756 Esterase: Putative es 99.2 1.4E-11 3.1E-16 124.4 7.0 219 468-707 4-251 (251)
136 PF03403 PAF-AH_p_II: Platelet 99.2 1.2E-10 2.6E-15 122.8 13.1 190 490-712 98-360 (379)
137 KOG2984 Predicted hydrolase [G 99.2 8.2E-11 1.8E-15 106.2 8.9 203 493-709 43-275 (277)
138 TIGR01838 PHA_synth_I poly(R)- 99.2 5.5E-10 1.2E-14 121.8 17.1 211 457-689 163-455 (532)
139 PRK11028 6-phosphogluconolacto 99.2 5.8E-08 1.3E-12 102.4 30.7 257 150-434 42-311 (330)
140 PF00561 Abhydrolase_1: alpha/ 99.1 2.7E-10 5.9E-15 113.1 12.0 159 522-690 1-216 (230)
141 COG2706 3-carboxymuconate cycl 99.1 1.2E-07 2.5E-12 94.1 29.7 284 79-395 30-332 (346)
142 PRK07868 acyl-CoA synthetase; 99.1 1.4E-09 3.1E-14 130.7 19.7 216 492-720 67-371 (994)
143 COG3571 Predicted hydrolase of 99.1 2.1E-09 4.5E-14 93.5 14.4 183 491-709 13-210 (213)
144 PF05728 UPF0227: Uncharacteri 99.1 3.6E-09 7.8E-14 99.6 17.2 179 495-707 2-186 (187)
145 COG2706 3-carboxymuconate cycl 99.1 6.4E-08 1.4E-12 95.9 26.4 218 194-437 92-331 (346)
146 PRK13616 lipoprotein LpqB; Pro 99.1 8.8E-09 1.9E-13 114.5 23.1 171 192-395 351-536 (591)
147 COG4757 Predicted alpha/beta h 99.1 4.7E-10 1E-14 103.9 10.7 229 461-707 8-280 (281)
148 COG4188 Predicted dienelactone 99.1 2.7E-10 5.7E-15 114.9 8.4 218 458-689 38-294 (365)
149 KOG3101 Esterase D [General fu 99.1 9.2E-10 2E-14 100.1 10.1 206 471-691 27-263 (283)
150 PF10282 Lactonase: Lactonase, 99.1 1.3E-07 2.8E-12 100.0 28.0 273 88-394 36-332 (345)
151 PF06821 Ser_hydrolase: Serine 99.0 5.8E-09 1.3E-13 97.2 15.1 152 495-690 1-154 (171)
152 PF02273 Acyl_transf_2: Acyl t 99.0 3.4E-08 7.5E-13 92.6 19.7 207 463-692 7-240 (294)
153 KOG2624 Triglyceride lipase-ch 99.0 8.8E-09 1.9E-13 107.7 16.8 246 453-711 43-399 (403)
154 PF10282 Lactonase: Lactonase, 99.0 3.8E-07 8.3E-12 96.4 28.1 259 154-437 48-332 (345)
155 cd00312 Esterase_lipase Estera 99.0 1.8E-09 3.9E-14 120.5 10.8 130 470-607 77-215 (493)
156 PRK11028 6-phosphogluconolacto 98.9 8.3E-07 1.8E-11 93.6 29.0 266 90-394 36-314 (330)
157 PF07224 Chlorophyllase: Chlor 98.9 7.1E-09 1.5E-13 98.3 11.5 178 472-689 33-230 (307)
158 COG0627 Predicted esterase [Ge 98.9 7.3E-09 1.6E-13 105.4 12.3 218 489-712 51-313 (316)
159 PRK13616 lipoprotein LpqB; Pro 98.9 3.8E-08 8.2E-13 109.5 18.6 165 147-336 354-533 (591)
160 KOG3847 Phospholipase A2 (plat 98.9 2.4E-08 5.2E-13 96.7 14.1 192 488-712 114-373 (399)
161 TIGR01839 PHA_synth_II poly(R) 98.9 5.2E-08 1.1E-12 105.1 18.0 165 511-689 237-481 (560)
162 TIGR02658 TTQ_MADH_Hv methylam 98.9 4E-06 8.7E-11 86.7 29.8 252 150-433 53-334 (352)
163 PF02897 Peptidase_S9_N: Proly 98.9 4.6E-07 1E-11 98.8 23.8 218 193-433 126-362 (414)
164 KOG2564 Predicted acetyltransf 98.8 4.8E-08 1E-12 93.4 13.4 129 455-602 47-179 (343)
165 KOG2112 Lysophospholipase [Lip 98.8 9.2E-08 2E-12 88.6 14.1 115 566-709 88-203 (206)
166 cd00200 WD40 WD40 domain, foun 98.8 4.5E-06 9.8E-11 84.8 28.3 264 89-415 10-280 (289)
167 PF06342 DUF1057: Alpha/beta h 98.8 3.2E-07 7E-12 89.0 17.5 104 489-604 32-136 (297)
168 COG3208 GrsT Predicted thioest 98.8 9.2E-08 2E-12 91.0 13.4 196 490-707 6-233 (244)
169 COG2819 Predicted hydrolase of 98.8 1.4E-06 3.1E-11 84.5 21.0 115 554-689 119-244 (264)
170 KOG0279 G protein beta subunit 98.8 6.7E-06 1.5E-10 78.6 24.8 230 156-432 29-265 (315)
171 KOG2382 Predicted alpha/beta h 98.8 1.2E-07 2.7E-12 94.2 13.5 208 489-710 49-313 (315)
172 KOG2055 WD40 repeat protein [G 98.7 9.2E-07 2E-11 89.8 19.7 213 90-338 215-429 (514)
173 cd00707 Pancreat_lipase_like P 98.7 4.9E-08 1.1E-12 99.2 10.5 111 491-605 35-147 (275)
174 PRK10115 protease 2; Provision 98.7 1.3E-06 2.8E-11 100.1 23.0 218 191-437 127-354 (686)
175 COG2021 MET2 Homoserine acetyl 98.7 9.8E-07 2.1E-11 89.2 19.1 113 490-604 49-181 (368)
176 PF08450 SGL: SMP-30/Gluconola 98.7 2.7E-06 5.9E-11 85.5 22.8 223 150-415 7-245 (246)
177 COG2382 Fes Enterochelin ester 98.7 3.4E-07 7.5E-12 89.9 15.2 221 457-711 68-296 (299)
178 PF09752 DUF2048: Uncharacteri 98.7 6.3E-07 1.4E-11 90.6 17.0 200 472-689 77-328 (348)
179 KOG0318 WD40 repeat stress pro 98.7 8.2E-06 1.8E-10 84.4 25.1 229 163-432 79-353 (603)
180 cd00200 WD40 WD40 domain, foun 98.7 8.2E-06 1.8E-10 82.9 25.7 226 156-432 22-252 (289)
181 PF08662 eIF2A: Eukaryotic tra 98.7 9.1E-07 2E-11 84.8 16.6 122 166-315 40-162 (194)
182 KOG2055 WD40 repeat protein [G 98.7 2.1E-06 4.6E-11 87.3 19.2 242 146-429 215-467 (514)
183 KOG0315 G-protein beta subunit 98.6 6.7E-06 1.4E-10 77.3 20.5 202 89-336 84-294 (311)
184 COG2272 PnbA Carboxylesterase 98.6 7.3E-08 1.6E-12 100.7 8.4 128 470-606 78-218 (491)
185 PF03959 FSH1: Serine hydrolas 98.6 1.5E-07 3.2E-12 91.9 9.4 168 491-692 3-204 (212)
186 COG0596 MhpC Predicted hydrola 98.6 1.4E-06 3.1E-11 87.6 16.7 99 493-604 22-122 (282)
187 TIGR01849 PHB_depoly_PhaZ poly 98.6 1.3E-06 2.7E-11 91.9 16.3 70 641-710 333-406 (406)
188 KOG0293 WD40 repeat-containing 98.6 3E-06 6.6E-11 84.9 17.4 201 190-432 224-428 (519)
189 PF00135 COesterase: Carboxyle 98.6 4.2E-08 9.2E-13 111.0 5.1 127 470-604 107-244 (535)
190 PF08662 eIF2A: Eukaryotic tra 98.6 3.4E-06 7.4E-11 80.8 17.5 161 194-383 9-178 (194)
191 TIGR03502 lipase_Pla1_cef extr 98.6 1.7E-06 3.7E-11 97.7 17.0 99 490-590 447-574 (792)
192 KOG0272 U4/U6 small nuclear ri 98.5 7.5E-06 1.6E-10 82.5 18.9 226 146-415 221-449 (459)
193 PTZ00420 coronin; Provisional 98.5 2.1E-05 4.6E-10 86.9 24.4 205 148-394 78-301 (568)
194 COG3386 Gluconolactonase [Carb 98.5 2.1E-05 4.4E-10 80.4 22.4 230 149-419 31-279 (307)
195 PTZ00421 coronin; Provisional 98.5 9.5E-05 2.1E-09 81.2 29.0 119 191-335 76-203 (493)
196 PRK04940 hypothetical protein; 98.5 2.8E-06 6.1E-11 78.2 14.3 116 571-708 60-178 (180)
197 TIGR03230 lipo_lipase lipoprot 98.5 6E-07 1.3E-11 95.4 11.2 111 491-605 40-154 (442)
198 KOG2551 Phospholipase/carboxyh 98.5 6.7E-06 1.5E-10 76.8 16.3 122 555-712 92-222 (230)
199 TIGR02658 TTQ_MADH_Hv methylam 98.5 8.8E-05 1.9E-09 76.9 26.1 129 201-336 11-142 (352)
200 KOG0293 WD40 repeat-containing 98.5 3.7E-06 8E-11 84.3 14.7 198 191-433 270-474 (519)
201 PF10340 DUF2424: Protein of u 98.5 6.6E-06 1.4E-10 84.8 16.9 196 474-689 108-349 (374)
202 KOG0266 WD40 repeat-containing 98.5 4E-05 8.6E-10 84.2 24.2 231 152-432 169-412 (456)
203 KOG0645 WD40 repeat protein [G 98.4 0.00022 4.9E-09 68.1 24.5 194 156-383 28-224 (312)
204 PF11144 DUF2920: Protein of u 98.4 2.9E-05 6.2E-10 80.2 19.3 164 547-712 158-369 (403)
205 PF07433 DUF1513: Protein of u 98.4 0.00028 6E-09 70.6 24.9 229 156-409 19-269 (305)
206 PTZ00421 coronin; Provisional 98.3 6.7E-05 1.4E-09 82.4 22.6 151 155-332 88-247 (493)
207 KOG0271 Notchless-like WD40 re 98.3 4.7E-05 1E-09 75.9 18.9 130 157-317 129-266 (480)
208 KOG0266 WD40 repeat-containing 98.3 0.00016 3.5E-09 79.4 25.5 160 146-333 205-367 (456)
209 KOG0272 U4/U6 small nuclear ri 98.3 1.2E-05 2.5E-10 81.1 14.6 222 156-425 188-416 (459)
210 PF10647 Gmad1: Lipoprotein Lp 98.3 0.00011 2.4E-09 73.7 21.9 189 177-398 10-209 (253)
211 KOG0286 G-protein beta subunit 98.3 0.00049 1.1E-08 66.6 24.7 231 150-414 61-333 (343)
212 COG1073 Hydrolases of the alph 98.3 2.5E-06 5.4E-11 88.3 10.3 78 632-711 218-298 (299)
213 PF10142 PhoPQ_related: PhoPQ- 98.3 2.6E-05 5.6E-10 80.9 17.5 150 561-717 162-327 (367)
214 TIGR02171 Fb_sc_TIGR02171 Fibr 98.3 3.3E-05 7.2E-10 86.8 19.0 263 155-438 319-596 (912)
215 PF11339 DUF3141: Protein of u 98.3 2.9E-05 6.4E-10 81.5 16.9 49 641-689 293-348 (581)
216 PF02239 Cytochrom_D1: Cytochr 98.3 5.2E-05 1.1E-09 80.3 19.1 198 158-393 9-209 (369)
217 PLN02919 haloacid dehalogenase 98.3 0.00048 1E-08 82.9 29.4 222 89-338 568-841 (1057)
218 PTZ00420 coronin; Provisional 98.3 0.001 2.2E-08 73.8 29.5 211 190-438 74-302 (568)
219 PLN02919 haloacid dehalogenase 98.3 0.00061 1.3E-08 82.0 29.9 257 145-433 570-892 (1057)
220 COG3545 Predicted esterase of 98.3 4.6E-05 9.9E-10 68.8 15.1 137 547-708 38-177 (181)
221 PF10647 Gmad1: Lipoprotein Lp 98.2 0.0002 4.4E-09 71.8 21.4 165 148-338 29-205 (253)
222 PF06057 VirJ: Bacterial virul 98.2 1.2E-05 2.6E-10 74.3 11.2 166 511-708 19-190 (192)
223 KOG0296 Angio-associated migra 98.2 0.0012 2.7E-08 65.7 25.7 247 149-433 111-360 (399)
224 KOG0271 Notchless-like WD40 re 98.2 3.1E-05 6.8E-10 77.1 14.6 173 147-351 250-461 (480)
225 KOG1446 Histone H3 (Lys4) meth 98.2 0.0016 3.5E-08 63.9 25.7 249 89-395 15-271 (311)
226 KOG0279 G protein beta subunit 98.2 8E-05 1.7E-09 71.4 16.3 151 154-334 74-226 (315)
227 KOG2139 WD40 repeat protein [G 98.2 0.00037 8E-09 69.3 21.2 99 150-262 203-302 (445)
228 PF05677 DUF818: Chlamydia CHL 98.2 9.6E-05 2.1E-09 74.0 16.9 181 453-655 107-300 (365)
229 PF06028 DUF915: Alpha/beta hy 98.2 2.8E-05 6.1E-10 77.0 13.2 207 494-707 13-252 (255)
230 KOG1446 Histone H3 (Lys4) meth 98.2 0.0002 4.3E-09 70.1 18.3 179 88-308 100-286 (311)
231 PF07433 DUF1513: Protein of u 98.1 0.0011 2.3E-08 66.5 23.6 215 192-434 6-252 (305)
232 KOG0291 WD40-repeat-containing 98.1 0.00048 1E-08 74.7 22.4 230 153-430 318-551 (893)
233 PF10230 DUF2305: Uncharacteri 98.1 9.3E-05 2E-09 74.7 16.6 194 492-690 2-265 (266)
234 KOG1553 Predicted alpha/beta h 98.1 1.1E-05 2.5E-10 79.3 9.3 135 459-611 215-351 (517)
235 KOG4499 Ca2+-binding protein R 98.1 9.7E-05 2.1E-09 69.2 14.5 134 190-335 108-246 (310)
236 KOG0315 G-protein beta subunit 98.1 0.00032 6.8E-09 66.3 17.6 186 155-384 95-288 (311)
237 PF05705 DUF829: Eukaryotic pr 98.1 0.00016 3.4E-09 72.3 17.1 203 493-707 1-240 (240)
238 KOG0772 Uncharacterized conser 98.1 0.00013 2.8E-09 75.6 16.1 234 89-351 215-467 (641)
239 COG3490 Uncharacterized protei 98.1 0.0007 1.5E-08 65.5 19.6 154 155-320 81-247 (366)
240 COG3150 Predicted esterase [Ge 98.1 6.1E-05 1.3E-09 66.9 11.5 179 495-708 2-187 (191)
241 PF02239 Cytochrom_D1: Cytochr 98.1 0.0011 2.5E-08 70.2 23.5 158 151-338 45-210 (369)
242 PF12146 Hydrolase_4: Putative 98.0 6.3E-06 1.4E-10 65.7 4.7 58 469-536 1-58 (79)
243 KOG0645 WD40 repeat protein [G 98.0 0.0037 8.1E-08 60.0 23.6 176 190-403 14-201 (312)
244 COG4257 Vgb Streptogramin lyas 98.0 0.0028 6.1E-08 61.1 21.5 226 156-432 74-308 (353)
245 KOG4497 Uncharacterized conser 97.9 0.00092 2E-08 65.7 18.4 90 298-403 319-408 (447)
246 KOG1407 WD40 repeat protein [F 97.9 0.0045 9.7E-08 59.2 22.3 217 154-418 76-294 (313)
247 PLN00181 protein SPA1-RELATED; 97.9 0.0083 1.8E-07 71.2 30.7 143 155-330 545-690 (793)
248 KOG0286 G-protein beta subunit 97.9 0.0037 8.1E-08 60.7 21.9 201 191-431 56-261 (343)
249 KOG4840 Predicted hydrolases o 97.9 0.0002 4.4E-09 66.5 12.9 106 493-608 37-147 (299)
250 COG3243 PhaC Poly(3-hydroxyalk 97.9 0.00012 2.6E-09 75.3 12.5 89 511-607 129-219 (445)
251 KOG1445 Tumor-specific antigen 97.9 9.4E-05 2E-09 78.2 12.0 208 89-329 628-843 (1012)
252 KOG0291 WD40-repeat-containing 97.9 0.007 1.5E-07 66.1 25.7 204 90-337 309-517 (893)
253 PF00975 Thioesterase: Thioest 97.9 0.0002 4.3E-09 71.1 13.6 196 494-707 2-229 (229)
254 KOG3253 Predicted alpha/beta h 97.9 0.00024 5.1E-09 75.5 13.8 189 491-715 175-383 (784)
255 COG1770 PtrB Protease II [Amin 97.9 0.014 3E-07 63.8 27.3 220 191-437 129-356 (682)
256 KOG0296 Angio-associated migra 97.8 0.0072 1.6E-07 60.5 22.4 271 88-417 106-389 (399)
257 PF06433 Me-amine-dh_H: Methyl 97.8 0.0084 1.8E-07 61.0 23.3 212 194-433 98-324 (342)
258 KOG1407 WD40 repeat protein [F 97.8 0.0018 3.9E-08 61.8 17.2 183 192-415 66-250 (313)
259 KOG0275 Conserved WD40 repeat- 97.8 0.00044 9.6E-09 67.4 13.4 263 90-403 215-485 (508)
260 KOG1516 Carboxylesterase and r 97.8 3E-05 6.5E-10 87.8 6.5 128 470-605 95-232 (545)
261 KOG0318 WD40 repeat stress pro 97.7 0.023 5E-07 59.6 25.5 267 83-411 315-588 (603)
262 KOG2314 Translation initiation 97.7 0.028 6.1E-07 59.4 26.0 231 164-432 281-528 (698)
263 KOG1445 Tumor-specific antigen 97.7 0.0003 6.6E-09 74.5 11.9 99 221-332 700-800 (1012)
264 KOG2096 WD40 repeat protein [G 97.7 0.014 3E-07 57.4 22.0 219 77-329 75-309 (420)
265 KOG0973 Histone transcription 97.7 0.0024 5.3E-08 72.4 19.1 121 190-329 129-252 (942)
266 TIGR02171 Fb_sc_TIGR02171 Fibr 97.7 0.00035 7.6E-09 78.8 12.6 98 203-317 319-420 (912)
267 KOG0639 Transducin-like enhanc 97.7 0.0016 3.4E-08 67.5 15.6 226 156-426 432-662 (705)
268 KOG0306 WD40-repeat-containing 97.7 0.0072 1.6E-07 66.0 21.1 226 145-416 414-654 (888)
269 KOG0305 Anaphase promoting com 97.6 0.0033 7.2E-08 67.3 18.6 212 164-418 196-453 (484)
270 COG3490 Uncharacterized protei 97.6 0.009 2E-07 58.1 19.5 216 191-434 68-315 (366)
271 KOG1274 WD40 repeat protein [G 97.6 0.0033 7.1E-08 70.1 18.7 150 150-331 104-263 (933)
272 COG4257 Vgb Streptogramin lyas 97.6 0.021 4.5E-07 55.4 21.6 249 90-396 63-315 (353)
273 KOG2139 WD40 repeat protein [G 97.6 0.0016 3.4E-08 65.0 14.4 179 166-389 121-314 (445)
274 KOG0263 Transcription initiati 97.6 0.0011 2.5E-08 72.4 14.8 142 154-329 503-648 (707)
275 COG4947 Uncharacterized protei 97.6 0.00018 3.8E-09 64.0 6.9 117 556-689 88-215 (227)
276 KOG0273 Beta-transducin family 97.6 0.015 3.2E-07 60.3 21.4 246 146-433 237-486 (524)
277 PF12048 DUF3530: Protein of u 97.6 0.0041 8.8E-08 64.2 18.0 215 458-710 62-309 (310)
278 PF01674 Lipase_2: Lipase (cla 97.6 0.00016 3.6E-09 69.8 6.9 88 495-590 4-94 (219)
279 PF00151 Lipase: Lipase; Inte 97.6 9.7E-05 2.1E-09 76.6 5.6 112 490-605 69-187 (331)
280 KOG0288 WD40 repeat protein Ti 97.6 0.00095 2.1E-08 67.6 12.2 139 157-325 314-458 (459)
281 KOG0643 Translation initiation 97.6 0.045 9.7E-07 52.8 22.6 159 146-331 52-221 (327)
282 KOG0273 Beta-transducin family 97.5 0.026 5.7E-07 58.4 22.2 254 89-403 236-499 (524)
283 KOG1520 Predicted alkaloid syn 97.5 0.039 8.5E-07 56.6 23.3 146 149-310 121-277 (376)
284 KOG0772 Uncharacterized conser 97.5 0.02 4.4E-07 59.9 21.4 240 160-430 184-446 (641)
285 PF03096 Ndr: Ndr family; Int 97.5 0.0054 1.2E-07 61.0 16.4 219 469-708 8-277 (283)
286 KOG0263 Transcription initiati 97.5 0.0018 3.8E-08 71.0 14.0 195 142-381 447-646 (707)
287 PF07676 PD40: WD40-like Beta 97.5 0.00027 5.9E-09 47.8 5.2 38 234-274 2-39 (39)
288 KOG1273 WD40 repeat protein [G 97.4 0.03 6.5E-07 55.1 19.6 143 162-333 42-186 (405)
289 PTZ00472 serine carboxypeptida 97.4 0.00096 2.1E-08 72.9 10.8 133 468-608 59-219 (462)
290 PF06977 SdiA-regulated: SdiA- 97.4 0.04 8.6E-07 54.6 21.1 206 192-426 23-247 (248)
291 KOG1274 WD40 repeat protein [G 97.4 0.028 6.1E-07 63.0 21.7 146 161-334 72-222 (933)
292 PLN00181 protein SPA1-RELATED; 97.4 0.025 5.5E-07 67.1 23.7 193 191-429 484-690 (793)
293 KOG0284 Polyadenylation factor 97.4 0.0038 8.2E-08 63.3 13.6 264 91-417 99-371 (464)
294 COG3391 Uncharacterized conser 97.4 0.12 2.6E-06 55.3 26.3 205 194-433 77-287 (381)
295 KOG0289 mRNA splicing factor [ 97.3 0.046 1E-06 56.1 21.1 244 146-437 221-470 (506)
296 KOG2931 Differentiation-relate 97.3 0.02 4.3E-07 56.3 17.7 130 458-605 22-157 (326)
297 COG1506 DAP2 Dipeptidyl aminop 97.3 0.16 3.5E-06 58.2 28.3 193 165-385 149-343 (620)
298 COG4814 Uncharacterized protei 97.3 0.0043 9.3E-08 59.4 12.7 204 491-708 45-285 (288)
299 PF13360 PQQ_2: PQQ-like domai 97.3 0.045 9.8E-07 54.3 21.3 195 199-433 33-234 (238)
300 PF07819 PGAP1: PGAP1-like pro 97.3 0.0013 2.8E-08 64.5 9.8 101 493-604 5-122 (225)
301 KOG0282 mRNA splicing factor [ 97.3 0.004 8.7E-08 64.5 13.4 150 150-328 222-372 (503)
302 COG3204 Uncharacterized protei 97.2 0.054 1.2E-06 53.4 19.2 207 192-427 87-310 (316)
303 KOG2110 Uncharacterized conser 97.2 0.016 3.5E-07 58.2 15.8 151 152-329 95-249 (391)
304 KOG2919 Guanine nucleotide-bin 97.2 0.14 3E-06 50.8 21.6 146 156-330 124-281 (406)
305 PF05990 DUF900: Alpha/beta hy 97.2 0.0042 9.1E-08 61.3 11.6 140 490-659 16-167 (233)
306 KOG0305 Anaphase promoting com 97.2 0.015 3.4E-07 62.3 16.4 196 194-427 181-419 (484)
307 KOG4497 Uncharacterized conser 97.2 0.0028 6E-08 62.4 9.8 115 196-337 14-129 (447)
308 KOG0643 Translation initiation 97.1 0.17 3.6E-06 49.0 21.2 161 193-383 55-219 (327)
309 PF07519 Tannase: Tannase and 97.1 0.012 2.7E-07 64.4 15.9 128 471-608 16-153 (474)
310 KOG2048 WD40 repeat protein [G 97.1 0.12 2.6E-06 56.2 22.3 168 237-432 379-551 (691)
311 KOG0265 U5 snRNP-specific prot 97.1 0.34 7.3E-06 47.7 23.3 218 155-417 102-329 (338)
312 KOG0278 Serine/threonine kinas 97.1 0.016 3.4E-07 55.1 13.9 145 154-330 154-299 (334)
313 KOG1539 WD repeat protein [Gen 97.1 0.015 3.3E-07 64.3 15.8 146 149-328 498-646 (910)
314 KOG0303 Actin-binding protein 97.1 0.025 5.4E-07 57.4 16.0 160 149-331 88-250 (472)
315 KOG0973 Histone transcription 97.1 0.0069 1.5E-07 68.9 13.5 134 191-351 70-229 (942)
316 KOG0295 WD40 repeat-containing 97.1 0.02 4.4E-07 57.3 15.2 238 156-431 121-366 (406)
317 KOG0282 mRNA splicing factor [ 97.1 0.0052 1.1E-07 63.6 11.2 175 150-351 307-484 (503)
318 KOG0284 Polyadenylation factor 97.0 0.0094 2E-07 60.5 12.6 188 89-317 181-370 (464)
319 KOG1273 WD40 repeat protein [G 97.0 0.054 1.2E-06 53.4 17.3 117 194-338 27-145 (405)
320 KOG2315 Predicted translation 97.0 0.039 8.5E-07 58.5 17.4 121 165-314 251-371 (566)
321 PF00450 Peptidase_S10: Serine 97.0 0.0076 1.7E-07 65.7 13.1 139 461-608 16-184 (415)
322 PF06433 Me-amine-dh_H: Methyl 97.0 0.088 1.9E-06 53.7 19.2 194 221-436 17-220 (342)
323 COG3391 Uncharacterized conser 97.0 0.13 2.7E-06 55.2 21.8 205 150-392 81-289 (381)
324 PF04762 IKI3: IKI3 family; I 96.9 0.2 4.2E-06 59.7 24.6 210 91-331 24-290 (928)
325 KOG2394 WD40 protein DMR-N9 [G 96.9 0.007 1.5E-07 63.6 10.7 73 239-327 289-361 (636)
326 KOG0277 Peroxisomal targeting 96.9 0.049 1.1E-06 52.1 15.3 203 194-430 12-222 (311)
327 PLN02733 phosphatidylcholine-s 96.9 0.0016 3.6E-08 70.0 6.5 90 507-605 107-201 (440)
328 KOG0307 Vesicle coat complex C 96.9 0.0079 1.7E-07 68.8 11.6 255 89-384 65-327 (1049)
329 KOG2315 Predicted translation 96.8 0.23 4.9E-06 53.0 21.2 161 194-384 221-390 (566)
330 KOG2106 Uncharacterized conser 96.8 0.22 4.7E-06 52.4 20.7 92 221-329 428-520 (626)
331 PF07082 DUF1350: Protein of u 96.8 0.038 8.2E-07 53.6 14.4 175 494-689 18-204 (250)
332 KOG0289 mRNA splicing factor [ 96.8 0.26 5.7E-06 50.9 20.8 190 157-394 275-470 (506)
333 PF05577 Peptidase_S28: Serine 96.8 0.0028 6.1E-08 69.4 7.8 111 492-606 29-149 (434)
334 KOG0303 Actin-binding protein 96.8 0.15 3.2E-06 52.0 18.5 204 190-429 81-296 (472)
335 PRK13614 lipoprotein LpqB; Pro 96.8 0.13 2.8E-06 57.3 19.8 177 192-403 344-534 (573)
336 TIGR03300 assembly_YfgL outer 96.7 0.68 1.5E-05 49.7 24.8 234 152-433 63-301 (377)
337 KOG2394 WD40 protein DMR-N9 [G 96.7 0.0032 7E-08 66.0 6.3 58 193-259 293-351 (636)
338 KOG0269 WD40 repeat-containing 96.7 0.047 1E-06 60.1 15.1 201 92-331 91-297 (839)
339 KOG1539 WD repeat protein [Gen 96.7 0.0061 1.3E-07 67.2 8.5 90 166-276 557-646 (910)
340 PF06977 SdiA-regulated: SdiA- 96.6 0.11 2.4E-06 51.4 16.5 200 89-317 22-241 (248)
341 KOG0264 Nucleosome remodeling 96.6 0.12 2.5E-06 53.5 16.9 198 150-384 185-404 (422)
342 KOG0319 WD40-repeat-containing 96.6 0.1 2.2E-06 57.3 17.2 159 145-334 20-183 (775)
343 KOG2048 WD40 repeat protein [G 96.6 0.051 1.1E-06 58.9 14.9 156 149-333 389-551 (691)
344 KOG1063 RNA polymerase II elon 96.6 0.032 7E-07 60.5 13.1 122 190-328 525-648 (764)
345 KOG0319 WD40-repeat-containing 96.6 0.17 3.8E-06 55.5 18.5 227 156-429 162-397 (775)
346 PF07676 PD40: WD40-like Beta 96.6 0.0043 9.2E-08 41.9 4.3 38 180-225 2-39 (39)
347 KOG0265 U5 snRNP-specific prot 96.5 0.17 3.6E-06 49.8 16.0 120 191-337 48-170 (338)
348 KOG0310 Conserved WD40 repeat- 96.5 0.79 1.7E-05 48.2 21.8 147 154-332 79-227 (487)
349 KOG2096 WD40 repeat protein [G 96.5 0.13 2.9E-06 50.8 15.2 158 239-415 85-247 (420)
350 PF13360 PQQ_2: PQQ-like domai 96.4 0.56 1.2E-05 46.4 20.8 189 153-390 35-234 (238)
351 KOG0283 WD40 repeat-containing 96.4 0.12 2.5E-06 57.7 16.6 200 146-383 371-575 (712)
352 PRK11138 outer membrane biogen 96.4 1.7 3.8E-05 46.8 25.9 182 221-432 130-315 (394)
353 PRK11138 outer membrane biogen 96.4 1.9 4E-05 46.6 30.0 227 151-433 117-357 (394)
354 KOG0264 Nucleosome remodeling 96.4 0.28 6E-06 50.9 17.9 195 156-389 138-352 (422)
355 KOG2919 Guanine nucleotide-bin 96.4 0.31 6.7E-06 48.5 17.2 130 223-377 135-274 (406)
356 KOG2314 Translation initiation 96.3 0.49 1.1E-05 50.5 19.5 197 193-416 349-557 (698)
357 PRK13613 lipoprotein LpqB; Pro 96.3 0.52 1.1E-05 53.1 21.2 164 192-391 364-544 (599)
358 TIGR03300 assembly_YfgL outer 96.3 2 4.4E-05 46.0 32.4 227 151-433 102-342 (377)
359 KOG1007 WD repeat protein TSSC 96.3 0.2 4.4E-06 48.9 15.2 225 165-417 40-280 (370)
360 KOG0275 Conserved WD40 repeat- 96.3 0.079 1.7E-06 52.2 12.6 163 143-336 305-473 (508)
361 COG5354 Uncharacterized protei 96.3 0.41 9E-06 50.5 18.5 122 194-332 226-350 (561)
362 KOG0639 Transducin-like enhanc 96.2 0.074 1.6E-06 55.6 12.8 139 156-327 522-662 (705)
363 KOG0268 Sof1-like rRNA process 96.2 0.011 2.3E-07 59.2 6.4 144 156-329 201-346 (433)
364 PF08386 Abhydrolase_4: TAP-li 96.2 0.011 2.4E-07 50.0 5.7 59 645-708 34-92 (103)
365 PF04762 IKI3: IKI3 family; I 96.2 2.7 5.9E-05 50.3 27.5 60 191-259 76-139 (928)
366 KOG0295 WD40 repeat-containing 96.2 1.6 3.6E-05 44.2 21.3 220 158-423 165-402 (406)
367 KOG1524 WD40 repeat-containing 96.2 0.28 6.1E-06 51.9 16.6 124 162-316 82-205 (737)
368 COG4782 Uncharacterized protei 96.0 0.023 4.9E-07 57.8 7.9 111 492-611 116-240 (377)
369 COG5354 Uncharacterized protei 96.0 0.77 1.7E-05 48.6 19.0 228 166-430 109-349 (561)
370 KOG3975 Uncharacterized conser 96.0 0.24 5.1E-06 47.7 14.0 112 489-603 26-145 (301)
371 TIGR02604 Piru_Ver_Nterm putat 96.0 0.34 7.3E-06 51.7 17.3 135 194-339 17-181 (367)
372 PRK10252 entF enterobactin syn 95.9 0.11 2.4E-06 65.7 15.7 97 493-603 1069-1169(1296)
373 KOG4389 Acetylcholinesterase/B 95.9 0.0098 2.1E-07 62.3 5.0 126 471-606 120-256 (601)
374 KOG4378 Nuclear protein COP1 [ 95.9 0.061 1.3E-06 56.2 10.6 133 149-308 171-304 (673)
375 COG3319 Thioesterase domains o 95.8 0.038 8.2E-07 54.8 8.5 99 493-606 1-104 (257)
376 KOG4532 WD40-like repeat conta 95.8 0.71 1.5E-05 44.9 16.4 123 193-337 161-289 (344)
377 KOG0294 WD40 repeat-containing 95.8 1.9 4.2E-05 43.0 19.6 149 147-328 46-197 (362)
378 KOG0277 Peroxisomal targeting 95.8 0.29 6.4E-06 47.0 13.5 178 164-381 37-218 (311)
379 KOG2110 Uncharacterized conser 95.7 0.34 7.3E-06 49.1 14.5 140 221-386 106-250 (391)
380 PF03088 Str_synth: Strictosid 95.7 0.087 1.9E-06 42.7 8.6 77 195-278 2-87 (89)
381 PLN02209 serine carboxypeptida 95.7 0.047 1E-06 59.1 9.2 138 461-607 44-214 (437)
382 KOG0313 Microtubule binding pr 95.7 1.3 2.9E-05 45.1 18.3 131 241-403 261-395 (423)
383 KOG2281 Dipeptidyl aminopeptid 95.6 1 2.2E-05 49.4 18.5 69 364-432 514-586 (867)
384 KOG1538 Uncharacterized conser 95.6 2.2 4.8E-05 46.7 20.8 52 148-206 18-69 (1081)
385 KOG1551 Uncharacterized conser 95.6 0.22 4.7E-06 48.2 11.9 57 648-709 309-365 (371)
386 KOG2111 Uncharacterized conser 95.6 2.5 5.4E-05 42.3 19.4 111 146-278 138-256 (346)
387 PLN03016 sinapoylglucose-malat 95.5 0.088 1.9E-06 57.0 10.7 131 468-607 48-212 (433)
388 TIGR03712 acc_sec_asp2 accesso 95.5 0.53 1.1E-05 50.1 15.8 178 489-689 286-486 (511)
389 KOG1282 Serine carboxypeptidas 95.5 0.075 1.6E-06 57.1 9.7 140 461-607 49-215 (454)
390 PRK02888 nitrous-oxide reducta 95.4 2.2 4.7E-05 47.6 20.7 187 156-387 142-352 (635)
391 KOG1063 RNA polymerase II elon 95.4 0.68 1.5E-05 50.8 16.3 82 166-259 553-637 (764)
392 KOG0302 Ribosome Assembly prot 95.4 0.73 1.6E-05 46.9 15.5 135 165-327 234-377 (440)
393 PRK13613 lipoprotein LpqB; Pro 95.4 0.78 1.7E-05 51.7 17.8 162 150-334 370-543 (599)
394 PRK13614 lipoprotein LpqB; Pro 95.3 1.6 3.5E-05 48.7 19.7 161 150-335 350-523 (573)
395 KOG0283 WD40 repeat-containing 95.3 0.35 7.5E-06 54.0 14.2 148 150-327 417-575 (712)
396 PF11187 DUF2974: Protein of u 95.3 0.04 8.7E-07 53.8 6.4 75 529-604 43-122 (224)
397 KOG0306 WD40-repeat-containing 95.2 1.5 3.2E-05 48.8 18.3 230 143-415 372-611 (888)
398 COG3204 Uncharacterized protei 95.1 3.2 6.9E-05 41.4 18.7 201 148-377 91-306 (316)
399 KOG2106 Uncharacterized conser 95.1 5.5 0.00012 42.4 23.0 88 245-351 412-501 (626)
400 KOG0288 WD40 repeat protein Ti 95.0 0.72 1.6E-05 47.5 14.2 105 222-340 323-427 (459)
401 KOG0268 Sof1-like rRNA process 95.0 0.093 2E-06 52.8 7.9 153 193-385 190-346 (433)
402 PRK13615 lipoprotein LpqB; Pro 95.0 1.3 2.8E-05 49.3 17.6 156 149-332 340-504 (557)
403 KOG4328 WD40 protein [Function 95.0 5.7 0.00012 41.7 21.3 196 89-317 187-390 (498)
404 KOG0647 mRNA export protein (c 94.9 0.38 8.1E-06 47.5 11.6 97 239-351 26-123 (347)
405 KOG0771 Prolactin regulatory e 94.9 0.66 1.4E-05 47.9 13.8 162 74-260 172-344 (398)
406 PRK13615 lipoprotein LpqB; Pro 94.9 2.1 4.5E-05 47.7 18.8 167 194-399 337-514 (557)
407 PF03022 MRJP: Major royal jel 94.9 1.6 3.5E-05 44.6 17.0 127 191-338 61-227 (287)
408 cd00216 PQQ_DH Dehydrogenases 94.9 8.2 0.00018 43.0 32.1 61 270-335 256-324 (488)
409 KOG0316 Conserved WD40 repeat- 94.9 3.2 7E-05 39.7 17.1 82 163-259 37-120 (307)
410 KOG2521 Uncharacterized conser 94.7 0.62 1.3E-05 48.2 13.4 226 490-724 37-304 (350)
411 KOG0307 Vesicle coat complex C 94.7 0.21 4.5E-06 57.8 10.7 234 157-427 82-327 (1049)
412 KOG0771 Prolactin regulatory e 94.7 0.35 7.7E-06 49.7 11.3 92 194-309 148-241 (398)
413 KOG2565 Predicted hydrolases o 94.7 0.11 2.5E-06 52.7 7.7 126 463-603 127-262 (469)
414 KOG0290 Conserved WD40 repeat- 94.6 2 4.3E-05 42.3 15.6 153 148-330 154-318 (364)
415 KOG0294 WD40 repeat-containing 94.5 1.6 3.4E-05 43.6 14.7 186 158-389 100-286 (362)
416 KOG0278 Serine/threonine kinas 94.5 2.1 4.4E-05 41.3 15.0 155 191-385 144-298 (334)
417 KOG2100 Dipeptidyl aminopeptid 94.5 8 0.00017 45.3 23.3 106 302-420 344-462 (755)
418 PHA02713 hypothetical protein; 94.5 3.7 8.1E-05 46.4 20.3 240 166-436 273-540 (557)
419 smart00824 PKS_TE Thioesterase 94.4 0.25 5.3E-06 47.6 9.7 82 509-603 14-100 (212)
420 KOG1007 WD repeat protein TSSC 94.4 1.5 3.2E-05 43.1 14.2 109 191-325 124-242 (370)
421 PF07995 GSDH: Glucose / Sorbo 94.3 1.8 3.9E-05 45.4 16.3 66 192-259 115-199 (331)
422 KOG1009 Chromatin assembly com 94.3 0.42 9.2E-06 49.0 10.7 60 243-317 126-186 (434)
423 KOG1524 WD40 repeat-containing 94.3 2.7 5.8E-05 45.0 16.7 130 149-312 111-241 (737)
424 COG1075 LipA Predicted acetylt 94.3 0.12 2.7E-06 54.1 7.5 97 494-604 61-163 (336)
425 KOG1214 Nidogen and related ba 94.2 4.1 8.8E-05 45.9 18.7 197 154-393 990-1193(1289)
426 KOG3967 Uncharacterized conser 94.2 0.39 8.4E-06 44.9 9.3 96 492-593 101-213 (297)
427 TIGR03606 non_repeat_PQQ dehyd 94.1 4.3 9.2E-05 44.1 18.7 30 78-107 19-48 (454)
428 KOG2111 Uncharacterized conser 94.1 2.1 4.6E-05 42.8 14.7 153 147-329 97-257 (346)
429 KOG4378 Nuclear protein COP1 [ 94.1 3.1 6.7E-05 44.0 16.6 179 221-432 101-283 (673)
430 KOG0310 Conserved WD40 repeat- 94.0 0.87 1.9E-05 47.9 12.5 196 191-431 27-227 (487)
431 KOG4283 Transcription-coupled 94.0 4.2 9E-05 40.2 16.2 162 156-338 57-229 (397)
432 PF02450 LCAT: Lecithin:choles 93.9 0.15 3.2E-06 54.7 7.4 82 509-605 66-160 (389)
433 TIGR02604 Piru_Ver_Nterm putat 93.9 2.2 4.9E-05 45.4 16.4 65 193-259 126-201 (367)
434 KOG3724 Negative regulator of 93.9 0.12 2.7E-06 57.5 6.5 71 520-599 131-210 (973)
435 KOG1538 Uncharacterized conser 93.8 0.5 1.1E-05 51.4 10.7 57 191-257 13-70 (1081)
436 KOG0316 Conserved WD40 repeat- 93.8 6.1 0.00013 37.9 16.5 195 191-433 18-217 (307)
437 PF13449 Phytase-like: Esteras 93.8 4.6 9.9E-05 42.3 18.0 123 153-278 94-251 (326)
438 KOG0640 mRNA cleavage stimulat 93.8 3.1 6.7E-05 41.4 15.1 155 149-335 177-340 (430)
439 KOG0302 Ribosome Assembly prot 93.7 2.7 5.9E-05 42.9 14.9 141 221-386 234-380 (440)
440 KOG4388 Hormone-sensitive lipa 93.7 0.17 3.7E-06 54.2 6.9 65 646-712 788-856 (880)
441 KOG4499 Ca2+-binding protein R 93.6 7.1 0.00015 37.5 21.8 219 148-403 20-259 (310)
442 KOG0640 mRNA cleavage stimulat 93.6 1.3 2.8E-05 43.9 12.1 156 192-384 174-335 (430)
443 PHA03098 kelch-like protein; P 93.5 4.5 9.7E-05 45.7 18.7 192 221-434 311-516 (534)
444 PF05057 DUF676: Putative seri 93.4 0.12 2.5E-06 50.6 5.1 21 570-590 77-97 (217)
445 KOG2182 Hydrolytic enzymes of 93.3 0.47 1E-05 50.5 9.5 112 490-604 84-206 (514)
446 KOG0313 Microtubule binding pr 93.3 2.3 5E-05 43.5 13.8 110 191-325 261-373 (423)
447 KOG4283 Transcription-coupled 93.3 9.4 0.0002 37.9 22.2 155 90-261 45-209 (397)
448 KOG1920 IkappaB kinase complex 93.2 23 0.0005 42.2 23.5 60 192-260 70-129 (1265)
449 KOG1523 Actin-related protein 93.2 1.1 2.4E-05 44.7 11.2 98 194-312 14-115 (361)
450 PHA03098 kelch-like protein; P 93.1 7 0.00015 44.1 19.6 200 166-395 312-520 (534)
451 KOG2183 Prolylcarboxypeptidase 93.0 0.25 5.4E-06 51.1 6.7 85 518-602 108-199 (492)
452 KOG4547 WD40 repeat-containing 92.9 6.1 0.00013 42.8 17.0 144 158-331 73-223 (541)
453 PF11768 DUF3312: Protein of u 92.9 3 6.5E-05 45.4 14.9 142 166-329 185-330 (545)
454 KOG1009 Chromatin assembly com 92.8 7.2 0.00016 40.4 16.6 51 299-353 125-177 (434)
455 KOG3621 WD40 repeat-containing 92.8 10 0.00022 42.3 18.7 242 149-432 40-356 (726)
456 KOG1214 Nidogen and related ba 92.8 2.2 4.8E-05 47.9 13.8 200 92-334 1028-1230(1289)
457 PHA02713 hypothetical protein; 92.6 13 0.00028 42.1 20.6 215 153-396 302-543 (557)
458 KOG1520 Predicted alkaloid syn 92.5 1.9 4.1E-05 44.6 12.2 142 89-254 115-278 (376)
459 KOG0292 Vesicle coat complex C 92.4 25 0.00053 40.5 26.8 239 89-384 10-280 (1202)
460 PRK02888 nitrous-oxide reducta 92.3 5.8 0.00013 44.3 16.5 108 201-331 140-269 (635)
461 PLN02193 nitrile-specifier pro 92.2 22 0.00047 39.4 24.9 208 166-395 194-419 (470)
462 KOG2541 Palmitoyl protein thio 92.2 1.2 2.5E-05 43.7 9.7 99 492-602 24-125 (296)
463 KOG4328 WD40 protein [Function 92.1 15 0.00033 38.7 18.1 158 191-383 187-352 (498)
464 KOG0299 U3 snoRNP-associated p 92.1 18 0.00039 38.2 22.2 97 322-425 348-455 (479)
465 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.8 23 0.0005 39.7 21.1 206 155-390 69-337 (527)
466 PF03283 PAE: Pectinacetyleste 91.5 0.19 4.1E-06 53.0 4.0 38 552-589 137-174 (361)
467 COG2939 Carboxypeptidase C (ca 91.4 0.44 9.5E-06 51.1 6.5 110 472-590 87-217 (498)
468 KOG0650 WD40 repeat nucleolar 91.3 3.5 7.5E-05 44.8 12.9 148 241-417 522-670 (733)
469 PF02333 Phytase: Phytase; In 91.2 22 0.00048 37.5 18.9 94 157-260 70-178 (381)
470 PLN02633 palmitoyl protein thi 91.0 2 4.3E-05 43.5 10.3 102 490-603 24-129 (314)
471 PF05096 Glu_cyclase_2: Glutam 90.9 11 0.00025 37.4 15.3 152 153-338 54-211 (264)
472 KOG1523 Actin-related protein 90.7 2 4.3E-05 43.0 9.7 99 243-358 13-117 (361)
473 TIGR03606 non_repeat_PQQ dehyd 90.7 27 0.00058 38.1 19.3 103 156-261 42-165 (454)
474 KOG0285 Pleiotropic regulator 90.6 22 0.00048 36.4 17.1 234 147-431 154-391 (460)
475 PF01764 Lipase_3: Lipase (cla 90.5 0.46 1E-05 42.6 5.1 52 552-605 47-106 (140)
476 PF09910 DUF2139: Uncharacteri 90.4 7.5 0.00016 38.8 13.3 153 217-390 16-185 (339)
477 PF11288 DUF3089: Protein of u 90.2 0.54 1.2E-05 44.8 5.3 39 551-590 76-114 (207)
478 KOG0647 mRNA export protein (c 89.9 23 0.00049 35.5 21.0 63 192-263 74-138 (347)
479 KOG1920 IkappaB kinase complex 89.5 17 0.00037 43.3 17.3 51 153-210 79-129 (1265)
480 KOG0646 WD40 repeat protein [G 89.5 10 0.00022 40.0 14.1 117 193-333 84-209 (476)
481 COG3946 VirJ Type IV secretory 89.2 0.76 1.6E-05 47.6 5.8 68 512-590 278-345 (456)
482 KOG1332 Vesicle coat complex C 88.9 17 0.00036 35.3 14.0 212 202-434 23-248 (299)
483 PF03088 Str_synth: Strictosid 88.8 1.1 2.3E-05 36.5 5.3 52 164-229 36-87 (89)
484 COG4287 PqaA PhoPQ-activated p 88.7 0.95 2.1E-05 46.1 6.0 122 568-692 231-373 (507)
485 KOG1034 Transcriptional repres 88.7 2.3 5E-05 42.7 8.5 96 154-263 104-204 (385)
486 PF03022 MRJP: Major royal jel 88.6 19 0.00041 36.8 15.7 141 156-317 78-255 (287)
487 cd00741 Lipase Lipase. Lipase 88.6 1.1 2.3E-05 41.0 6.1 36 553-590 12-47 (153)
488 COG2319 FOG: WD40 repeat [Gene 88.6 35 0.00076 35.9 24.1 229 159-432 81-317 (466)
489 KOG4441 Proteins containing BT 88.3 31 0.00068 39.1 18.5 240 166-434 302-551 (571)
490 KOG0276 Vesicle coat complex C 88.2 46 0.001 36.8 20.9 201 88-333 13-218 (794)
491 PF05787 DUF839: Bacterial pro 88.0 7.9 0.00017 43.1 13.3 118 242-372 351-520 (524)
492 TIGR03032 conserved hypothetic 87.8 34 0.00074 34.9 20.6 75 222-317 186-260 (335)
493 KOG0269 WD40 repeat-containing 87.7 3.6 7.7E-05 46.1 10.0 197 193-429 90-296 (839)
494 PLN02153 epithiospecifier prot 87.6 40 0.00087 35.4 20.6 201 221-435 50-290 (341)
495 PF02089 Palm_thioest: Palmito 87.5 2.6 5.7E-05 42.2 8.3 105 491-603 5-114 (279)
496 PF13449 Phytase-like: Esteras 87.4 33 0.00073 35.8 17.1 182 90-276 86-324 (326)
497 KOG0650 WD40 repeat nucleolar 87.4 27 0.00059 38.3 15.9 55 191-254 401-455 (733)
498 KOG0641 WD40 repeat protein [G 87.3 23 0.00051 33.6 13.7 141 163-328 202-349 (350)
499 TIGR03032 conserved hypothetic 87.1 6.3 0.00014 39.9 10.6 74 152-233 210-294 (335)
500 KOG0270 WD40 repeat-containing 87.0 25 0.00054 37.0 15.0 146 156-331 257-407 (463)
No 1
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-49 Score=441.81 Aligned_cols=581 Identities=25% Similarity=0.344 Sum_probs=416.5
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCC---CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC
Q 004816 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPT---EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG 154 (729)
Q Consensus 79 lt~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~---~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 154 (729)
++++++... ..++.+..+| ++.++++....+ ...+..+|..+.. ..+.++... .. ....|++++
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~-~~-------~~~~~spdg 71 (620)
T COG1506 4 FDAEDLLAL-ARVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGK---TVRLLTFGG-GV-------SELRWSPDG 71 (620)
T ss_pred CCHHHHHhh-hcccCcccCCCCceeEEeeccccccccccccceEEEecc---cccccccCC-cc-------cccccCCCC
Confidence 456666666 6778999999 999999976421 3344455654322 122222222 11 123355666
Q ss_pred CEEEEEECCC---CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccC----CC------------
Q 004816 155 DTVIFSNYKD---QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR----QD------------ 215 (729)
Q Consensus 155 ~~i~~~~~~~---~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~----~~------------ 215 (729)
..++|..... .++|+++.. + .++.. .....+..|+|+|+.+++...... ..
T Consensus 72 ~~~~~~~~~~~~~~~l~l~~~~---g---~~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (620)
T COG1506 72 SVLAFVSTDGGRVAQLYLVDVG---G---LITKT----AFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWF 141 (620)
T ss_pred CEEEEEeccCCCcceEEEEecC---C---ceeee----ecccccceeCCCCCeEEEEecccccccCCceeeeecccceee
Confidence 6777776222 378888865 2 12221 233477889999999988321110 00
Q ss_pred -CC-CcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC
Q 004816 216 -AL-NSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD 293 (729)
Q Consensus 216 -~~-~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~ 293 (729)
.. ....++|++|.++ ....+..+......++|++|++.++.+.......+|. ...++.... ++.. ....++ .
T Consensus 142 ~~~g~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~--~~~~~~-~ 215 (620)
T COG1506 142 DGRGGERSDLYVVDIES-KLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWV-TNLYVLIEG-NGEL--ESLTPG-E 215 (620)
T ss_pred cCCCCcccceEEEccCc-ccccccCCCCceeeeeeCCCCceeEEeeeccccCCce-EeeEEEecC-CCce--EEEcCC-C
Confidence 00 1356788888775 4445555556666788888889888777555423343 223333223 4443 223333 2
Q ss_pred CCccccccCceeCCCCc-EEEEEecCC-Cc---eEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEE
Q 004816 294 PTIVESPTEPKWSSKGE-LFFVTDRKN-GF---WNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLI 368 (729)
Q Consensus 294 ~~~~~~~~~~~wspDG~-l~~~~~~~~-g~---~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l 368 (729)
.+...+.|.+||+ +++...... +. ..++.++.+.++.......... ....|.. ... . ++..+
T Consensus 216 ----~~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-~~~~~~~---~~~-~----~~~~~ 282 (620)
T COG1506 216 ----GSISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDD-TRGAWAV---EGG-L----DGDGL 282 (620)
T ss_pred ----ceeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCc-ccCcHHh---ccc-c----CCCcE
Confidence 4567889999999 777776522 21 2355555344443331111000 0111111 011 1 56667
Q ss_pred EEEEEE-CCeEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCC
Q 004816 369 ACSYRQ-NGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD 447 (729)
Q Consensus 369 ~~~s~~-~g~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~ 447 (729)
++...+ .|...++.++..++....+..+...+..+..+++.+++..+++..|.++|+++. ++..+++ ....
T Consensus 283 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~--~~~~~~~------~~~~ 354 (620)
T COG1506 283 LFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR--GEEAKLT------SSNN 354 (620)
T ss_pred EEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeCCCEEEEEecCCCCccceEEEcC--CCceEEe------eccc
Confidence 777766 777888888766666666666667777776688999999999999999999987 3333322 2233
Q ss_pred CccCCCCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEe
Q 004816 448 TLKYKSYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV 527 (729)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~ 527 (729)
..+....+.+++.+++++. ||.++++|++.|.+.+ +.+++|+||++||||..+....|....|.|+++||+|+.+
T Consensus 355 ~~~~~~~~~~~e~~~~~~~-dG~~i~~~l~~P~~~~----~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~G~~V~~~ 429 (620)
T COG1506 355 SGLKKVKLAEPEPVTYKSN-DGETIHGWLYKPPGFD----PRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASAGYAVLAP 429 (620)
T ss_pred ccccccccCCceEEEEEcC-CCCEEEEEEecCCCCC----CCCCCCEEEEeCCCCccccccccchhhHHHhcCCeEEEEe
Confidence 4455677889999999998 9999999999998854 4566999999999999888888999999999999999999
Q ss_pred cCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccCh
Q 004816 528 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADL 607 (729)
Q Consensus 528 d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~ 607 (729)
|||||+|||++|.....++||..+.+|+.++++++.+.+.+|++||+|+|+|+||||+++++++.++|+++++..+++++
T Consensus 430 n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~~~~~~~~ 509 (620)
T COG1506 430 NYRGSTGYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVAVAGGVDW 509 (620)
T ss_pred CCCCCCccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEeccCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999966699999999998777
Q ss_pred hHHhhhcchhhhhhhhhhcC----ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 608 SMLRAETHKFESRYIDNLVG----SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
..+......-.......... +.+.|...||+.+++++++|+|+|||++|.+||.+|+++|+++|+.+|+++++++|
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~g~~~~~~~~ 589 (620)
T COG1506 510 LLYFGESTEGLRFDPEENGGGPPEDREKYEDRSPIFYADNIKTPLLLIHGEEDDRVPIEQAEQLVDALKRKGKPVELVVF 589 (620)
T ss_pred hhhccccchhhcCCHHHhCCCcccChHHHHhcChhhhhcccCCCEEEEeecCCccCChHHHHHHHHHHHHcCceEEEEEe
Confidence 65543322211111222222 46789999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
|+++|++..+++....++.+++||+++++.
T Consensus 590 p~e~H~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (620)
T COG1506 590 PDEGHGFSRPENRVKVLKEILDWFKRHLKQ 619 (620)
T ss_pred CCCCcCCCCchhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999973
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=3.6e-46 Score=421.32 Aligned_cols=570 Identities=12% Similarity=0.075 Sum_probs=397.2
Q ss_pred CceEEcCCCcEEEEeecCCCCCceEEEEcCC-CCC--CCCcccCCCC-CcccccccccCCceEEEECCEEEEEECCCC--
Q 004816 92 GGTAVDGHGRLIWLESRPTEAGRGVLVKEPA-KAG--DEPSDITPKE-YAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-- 165 (729)
Q Consensus 92 ~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~-~~~--g~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 165 (729)
+.|... |++.||.....+ .++.||+... .+. +..+.|++.. .......+..++..++++++.|+|..+..|
T Consensus 75 ~~p~~~-g~~~y~~~~~~g--~~~~~~~r~~~~~~~~~~~~~llD~n~~a~~~~~~~l~~~~~Spdg~~la~~~d~~G~E 151 (686)
T PRK10115 75 SAPYIK-NGYRYRHIYEPG--CEYAIYQRQSAFSEEWDEWETLLDANKRAAHSEFYTLGGMAITPDNTIMALAEDFLSRR 151 (686)
T ss_pred CCCEEE-CCEEEEEEEcCC--CccEEEEEecCCCCCCCCCEEEEcchhhccCCCcEEEeEEEECCCCCEEEEEecCCCcE
Confidence 345544 888888876443 3567775443 211 1234555422 111111222334445556668888877665
Q ss_pred --cEEEEeCCCCCCC--CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--ceEEeeeC
Q 004816 166 --RLYKHSIDSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQVLVSG 239 (729)
Q Consensus 166 --~l~~~d~~~~~~~--~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~~~~lt~~ 239 (729)
+|++.++.+ |. ...+... . ..+.|++||+.|+|++.+... ....+||+.++.++ +.+.|..+
T Consensus 152 ~~~l~v~d~~t--g~~l~~~i~~~------~-~~~~w~~D~~~~~y~~~~~~~---~~~~~v~~h~lgt~~~~d~lv~~e 219 (686)
T PRK10115 152 QYGIRFRNLET--GNWYPELLDNV------E-PSFVWANDSWTFYYVRKHPVT---LLPYQVWRHTIGTPASQDELVYEE 219 (686)
T ss_pred EEEEEEEECCC--CCCCCccccCc------c-eEEEEeeCCCEEEEEEecCCC---CCCCEEEEEECCCChhHCeEEEee
Confidence 799999987 65 3444332 2 348899999999998874321 12378999999988 45556553
Q ss_pred CC--eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec-CCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEe
Q 004816 240 SD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 240 ~~--~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
.+ ......-+.||+++....... ..+++++++.+ .+++. ..+..... + .. ..+. ..++.+++.++
T Consensus 220 ~~~~~~~~~~~s~d~~~l~i~~~~~-----~~~~~~l~~~~~~~~~~--~~~~~~~~-~--~~-~~~~-~~~~~ly~~tn 287 (686)
T PRK10115 220 KDDTFYVSLHKTTSKHYVVIHLASA-----TTSEVLLLDAELADAEP--FVFLPRRK-D--HE-YSLD-HYQHRFYLRSN 287 (686)
T ss_pred CCCCEEEEEEEcCCCCEEEEEEECC-----ccccEEEEECcCCCCCc--eEEEECCC-C--CE-EEEE-eCCCEEEEEEc
Confidence 22 222233455999987444332 23567777753 13432 22332222 1 11 1111 11233777777
Q ss_pred cCCCceEEEEEEcC-CCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 317 RKNGFWNLHKWIES-NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 317 ~~~g~~~l~~~d~~-~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
.......|..+++. .++.+.|..+..+ +.. .++.+ .++.|++...++|...|+.++++++..+.|+.
T Consensus 288 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~-----~~i--~~~~~-----~~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~ 355 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQWEELIPPREN-----IML--EGFTL-----FTDWLVVEERQRGLTSLRQINRKTREVIGIAF 355 (686)
T ss_pred CCCCCceEEEecCCCcccCeEEECCCCC-----CEE--EEEEE-----ECCEEEEEEEeCCEEEEEEEcCCCCceEEecC
Confidence 64567789988887 4566666644211 111 12233 34589999999999999999988777777763
Q ss_pred C-CcceEE--ee--eeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCCCCCCcEEEEeeccCCCe
Q 004816 396 P-FTDIDN--IT--LGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQ 470 (729)
Q Consensus 396 ~-~~~v~~--~~--~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~ 470 (729)
+ ...+.. .. .+++.+++..++...|.++|.+|+++++.+.|+ ......+++..+ .++++++++. ||.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~~l~------~~~~~~~~~~~~-~~e~v~~~s~-DG~ 427 (686)
T PRK10115 356 DDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERRVLK------QTEVPGFDAANY-RSEHLWITAR-DGV 427 (686)
T ss_pred CCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEEEEE------ecCCCCcCcccc-EEEEEEEECC-CCC
Confidence 2 222222 22 445789999999999999999999988765554 222233555544 8899999998 999
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV 550 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~ 550 (729)
+|++++..+++.. ..++.|+||++|||++....+.|....+.|+++||+|+.+|+|||+|+|+.|++.....++..
T Consensus 428 ~Ip~~l~~~~~~~----~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~ 503 (686)
T PRK10115 428 EVPVSLVYHRKHF----RKGHNPLLVYGYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKN 503 (686)
T ss_pred EEEEEEEEECCCC----CCCCCCEEEEEECCCCCCCCCCccHHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCC
Confidence 9999666544321 135669999999999999999999999999999999999999999999999999988888889
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh--cchhhhhhhhhhcC
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE--THKFESRYIDNLVG 627 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~--~~~~~~~~~~~~~~ 627 (729)
+++|++++++||++++++|++|++|+|.|+||+++.+++. +|++|+|+|+..|++|+..+... ....... ...+|
T Consensus 504 ~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~--~~e~G 581 (686)
T PRK10115 504 TFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGE--FEEWG 581 (686)
T ss_pred cHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhH--HHHhC
Confidence 9999999999999999999999999999999999999998 89999999999999999876421 1111111 11223
Q ss_pred C------hhhhhhcCcccccCCCCCC-EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE---CCCCcccCC-cccH
Q 004816 628 S------EKDYYEKSPINFVDKFSCP-IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY---EGEQHGFRK-AENI 696 (729)
Q Consensus 628 ~------~~~~~~~sp~~~~~~i~~P-vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~---~~~gH~~~~-~~~~ 696 (729)
+ .+.+.++||+.++++++.| +|++||.+|.+||+.|+.+++++|++++++++++++ +++||+... ....
T Consensus 582 ~p~~~~~~~~l~~~SP~~~v~~~~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~ 661 (686)
T PRK10115 582 NPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKS 661 (686)
T ss_pred CCCCHHHHHHHHHcCchhccCccCCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHH
Confidence 2 2345679999999999999 677899999999999999999999999998888888 999998432 2233
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 004816 697 KFTLEQQMVFFARVVGHF 714 (729)
Q Consensus 697 ~~~~~~~~~fl~~~l~~~ 714 (729)
.+.....+.|+...++.-
T Consensus 662 ~~~~A~~~aFl~~~~~~~ 679 (686)
T PRK10115 662 YEGVAMEYAFLIALAQGT 679 (686)
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 445556789999888733
No 3
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.5e-41 Score=344.34 Aligned_cols=546 Identities=19% Similarity=0.236 Sum_probs=386.9
Q ss_pred cccccccCCceEEEECC--EEEEEECCCCcEEEEeCCCCC--CCCeecCCCC--CCCceeeecceecC-CCCEEEEEEec
Q 004816 139 RTTAQEYGGGAFRIFGD--TVIFSNYKDQRLYKHSIDSKD--SSPLPITPDY--GEPLVSYADGIFDP-RFNRYVTVRED 211 (729)
Q Consensus 139 ~~~~~~~~~~~~~~~~~--~i~~~~~~~~~l~~~d~~~~~--~~~~~lt~~~--~~~~~~~~~~~~SP-dG~~l~~~~~~ 211 (729)
|.|....|+.+|.+... ..+|....+ ||--. +++. -...+++... -.......+|+++| |+.+|+|+.+
T Consensus 145 RkR~~~~GItsYe~hk~sg~~lF~~~s~--l~~c~-d~g~~~~t~~p~~p~~v~t~~t~~~~dP~lcP~~~~fia~i~~- 220 (867)
T KOG2281|consen 145 RKRLGVTGITSYEIHKGSGKFLFQANSG--LYHCS-DGGPQGFTVSPLTPLPVKTSPTSTRMDPKLCPADPDFIAYIKV- 220 (867)
T ss_pred HhhhceeeeeeEEEEcCCccEEEEecCC--ccccc-cCCCcccccCCCCCccccCCCCCCccCcccCCCCccceeeeeh-
Confidence 44555567888877633 566665422 33221 1100 1112222110 00112236888888 5999999976
Q ss_pred cCCCCCCcceEEEEEEcCCCceEEeeeC------------------------CCeeeeeeeCCCC----CeEEEEEecCC
Q 004816 212 RRQDALNSTTEIVAIALNGQNIQVLVSG------------------------SDFYAFPRMDPRG----ERMAWIEWHHP 263 (729)
Q Consensus 212 ~~~~~~~~~~~l~~~dl~~g~~~~lt~~------------------------~~~~~~~~~SPDG----~~la~~~~~~~ 263 (729)
+.||+.++.+++.++||.. .+.+.+.+|||-. .+|+|...|++
T Consensus 221 ---------~dl~V~n~~~~~ekrlt~~h~g~sn~~dd~~saGVasyv~QEEfdR~~GyWW~p~s~~~~~rIlYeeVdes 291 (867)
T KOG2281|consen 221 ---------CDLWVLNILTGEEKRLTYIHNGSSNSKDDAISAGVASYVVQEEFDRFEGYWWSPPSGLKILRILYEEVDES 291 (867)
T ss_pred ---------hhhhhhhhhhchhhceeeeeccccccccchhhcCcchHHHHHHHHhhcceeecCCCCCceEEEEeeecChh
Confidence 5699999999999888742 1356789999732 45777765544
Q ss_pred -------------------------CCCCCCcEEEEEEecC--CCCeeee---EEecCC--CCCccccccCceeCCCCc-
Q 004816 264 -------------------------NMPWDKAELWVGYISE--NGDVYKR---VCVAGF--DPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 264 -------------------------~~~~~~~~l~~~d~~~--~g~~~~~---~~~~~~--~~~~~~~~~~~~wspDG~- 310 (729)
|.++....|-++.+.. .|+...+ .+.... .-.|..++.++.|.|||+
T Consensus 292 ev~V~h~~s~~~~~~~~d~~rYPrtGt~Nak~~Lkmv~~~~~~~gk~~~v~~kdlv~~~~~~f~~~EYI~Ragwtpdgky 371 (867)
T KOG2281|consen 292 EVEVIHVPSPVLGDRRVDSYRYPRTGTKNAKSTLKMVEFENDAEGKIYDVPLKDLVQPFHCLFEDVEYIARAGWTPDGKY 371 (867)
T ss_pred heEEEeccCcccCCCccccccCCcCCCCCceeeEEEEEEeeccccceeccchhhcccccccccccceeeeeccccCCCcE
Confidence 1122233444444431 1222111 111110 112346788899999999
Q ss_pred EEEEE-ecCCCceEEEEEEcCCCeE---------------------EEeeccCccccCCcccccCcceeeeee--cCCCC
Q 004816 311 LFFVT-DRKNGFWNLHKWIESNNEV---------------------LAIYSLDAEFSRPLWVFGINSYEIIQS--HGEKN 366 (729)
Q Consensus 311 l~~~~-~~~~g~~~l~~~d~~~g~~---------------------~~l~~~~~~~~~~~w~~~~~~~~~l~~--~~~~~ 366 (729)
++.+. ++.+.+.+|..++++.... ..+..+. ...|....+-+.+++- +....
T Consensus 372 vwvq~LdR~Q~~l~iilip~~~f~~~~dn~~~~~~~~~~v~~~~~~~viyee~----sd~winiHd~f~~~~~~~~e~~~ 447 (867)
T KOG2281|consen 372 VWVQVLDRSQQRLQIILIPPTLFIPKEDNLQLRTDLNMGVPDDVSPEVIYEEP----SDGWINIHDIFHPLPQSTHEASY 447 (867)
T ss_pred EEEEEecCCcceeEEEEECHHHcCCccccHhhhhhhhhcCCcCCCcceEEecC----CCceEEhhhcccccccCCcccee
Confidence 44333 3434455666777654332 1122222 3467665555665541 11334
Q ss_pred EEEEEEEECCeEEEEEEECCC----------------------CceEeeccCCcceEE---e-eeeCCEEEEEEeCCCCC
Q 004816 367 LIACSYRQNGRSYLGILDDFG----------------------HSLSLLDIPFTDIDN---I-TLGNDCLFVEGASGVEP 420 (729)
Q Consensus 367 ~l~~~s~~~g~~~ly~~d~~~----------------------g~~~~lt~~~~~v~~---~-~~~~~~~~~~~~~~~~~ 420 (729)
.++|++++.++.|||.+.... ++...||.+.|.|.. + +++-.+++|+.++.++|
T Consensus 448 ~fi~asE~~~Frhly~its~lk~ng~~~s~~~~p~~~d~~c~i~ee~altSgeweVl~r~Gi~VdE~~~LVYf~gt~d~P 527 (867)
T KOG2281|consen 448 PFIWASEETGFRHLYLITSLLKPNGYCLSLGSAPLDQDFKCRIKEEIALTSGEWEVLARHGIWVDEVRKLVYFVGTKDTP 527 (867)
T ss_pred eEEEecccccceEEEEEEeecccCCCcccccCCcccccccCcchhheeecccceeehhhcCeeecccceEEEEEccCCCC
Confidence 589999999999999886433 234567788887644 3 56678899999999999
Q ss_pred ce--EEEEEcC-CCcceeeee---------------------------eEEecCC---CCC---------------ccCC
Q 004816 421 SS--VAKVTLD-DHKLKAVDF---------------------------KVVWSSS---PDT---------------LKYK 452 (729)
Q Consensus 421 ~~--ly~~d~~-~~~~~~lt~---------------------------~~~~~~~---~~~---------------~~~~ 452 (729)
.+ ||.+... .|+..+||+ ...+-.. ... ...+
T Consensus 528 lE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~~~~l~~q~~~~~~l~~~~~~~ 607 (867)
T KOG2281|consen 528 LEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPENDPLPKQVSFWAILVSGAPPP 607 (867)
T ss_pred ceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCccCcccchhhHHHHHHhcCCCC
Confidence 88 8998888 788888886 1111100 000 0112
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cc----hhhhHHHhhCCcEEEEe
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL----NLSIQYWTSRGWAFVDV 527 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~----~~~~~~la~~G~~v~~~ 527 (729)
.++..++.+.+++. .|..+.+.+|+|.+.. +++++|+|++++|||.-+... .| ....+.|+++||.|+.+
T Consensus 608 Pdy~p~eif~fqs~-tg~~lYgmiyKPhn~~----pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~LaslGy~Vv~I 682 (867)
T KOG2281|consen 608 PDYVPPEIFSFQSK-TGLTLYGMIYKPHNFQ----PGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASLGYVVVFI 682 (867)
T ss_pred CccCChhheeeecC-CCcEEEEEEEccccCC----CCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhcceEEEEE
Confidence 34555677888987 8999999999999855 588999999999999754332 22 24567899999999999
Q ss_pred cCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 528 NYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 528 d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
|-|||.-.|..|...+..++|..+++|...++++|.++. ++|.+||+|.|+|+|||++++++. +|+.|+++|+.+|++
T Consensus 683 DnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~IfrvAIAGapVT 762 (867)
T KOG2281|consen 683 DNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRVAIAGAPVT 762 (867)
T ss_pred cCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeEEeccCcce
Confidence 999999999999999999999999999999999999984 899999999999999999999998 999999999999999
Q ss_pred ChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC---CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 606 DLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS---CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 606 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~---~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
+|..|.. .+.++||+.+-.++..|.+-|-..++.++. ..+|++||--|..|...+.-.+..+|-++|++.++++
T Consensus 763 ~W~~YDT---gYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlLvHGliDENVHF~Hts~Lvs~lvkagKpyeL~I 839 (867)
T KOG2281|consen 763 DWRLYDT---GYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLLVHGLIDENVHFAHTSRLVSALVKAGKPYELQI 839 (867)
T ss_pred eeeeecc---cchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEEEecccccchhhhhHHHHHHHHHhCCCceEEEE
Confidence 9987644 355777776655678888888888888775 3499999999999999999999999999999999999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
||++.|+..+++.....-.+++.|+.+
T Consensus 840 fP~ERHsiR~~es~~~yE~rll~FlQ~ 866 (867)
T KOG2281|consen 840 FPNERHSIRNPESGIYYEARLLHFLQE 866 (867)
T ss_pred ccccccccCCCccchhHHHHHHHHHhh
Confidence 999999999999888888899999875
No 4
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-34 Score=320.58 Aligned_cols=523 Identities=22% Similarity=0.261 Sum_probs=338.2
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-CCCcceEEEEEEcCCCceEEeeeCCC--
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-ALNSTTEIVAIALNGQNIQVLVSGSD-- 241 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-~~~~~~~l~~~dl~~g~~~~lt~~~~-- 241 (729)
...+++++.+ +. ..+....+ .....-+.|||.|++++|+.+++-.. .......+.++.- +++-.......+
T Consensus 127 ~~~~~~~~~~--~~-~~~~~~~~--~~~~~~~~wsp~~~~l~yv~~~niy~~~~~~~~~~~~~~~-~~~~~i~ng~~Dw~ 200 (755)
T KOG2100|consen 127 AKYHLYDLNT--GE-KLHPPEYE--GSKIQYASWSPLGNDLAYVLHNNIYYQSSEEDEDVRIVSN-GGEDVIFNGKPDWI 200 (755)
T ss_pred EEEEEEEcCC--CC-cccCcccC--CCeeEEEEEcCCCCEEEEEEecccccccCcCCCceEEEec-CCCceEEcCCCCce
Confidence 3567777776 43 22222211 23345678999999999998754211 0000111112221 111111111111
Q ss_pred -------eeeeeeeCCCCCeEEEEEecCCCC---------------------------CCCCcEEEEEEecCCCCeeeeE
Q 004816 242 -------FYAFPRMDPRGERMAWIEWHHPNM---------------------------PWDKAELWVGYISENGDVYKRV 287 (729)
Q Consensus 242 -------~~~~~~~SPDG~~la~~~~~~~~~---------------------------~~~~~~l~~~d~~~~g~~~~~~ 287 (729)
.....+|||||.+++|...++... +.....|++.|.. +..... .
T Consensus 201 yeeEv~~~~~a~wwsp~g~~la~~~~~dt~V~~~~~~~~~~~~~yp~~~~~~ypk~g~~np~v~l~v~~~~-~~~~~~-~ 278 (755)
T KOG2100|consen 201 YEEEVLSSDSAIWWSPDGDRLAYASFNDTKVETINLPGYTDDDQYPKSTNFHYPKAGAPNPAVSLFVVDLH-DPPRLG-I 278 (755)
T ss_pred eehhhcccCccceeCCCCceeEEEEecccccceEEeccccccccCcccceeecCCCCCCCCeEEEEEEeCC-Cceeec-c
Confidence 223568999999999987554321 1122344555533 111100 0
Q ss_pred EecCCCCCccccccCceeCCCCcEEEEEe-cCCCceEEEEEEcCCCeEEEeeccCccccCC-cccccCc-ceeeeeecCC
Q 004816 288 CVAGFDPTIVESPTEPKWSSKGELFFVTD-RKNGFWNLHKWIESNNEVLAIYSLDAEFSRP-LWVFGIN-SYEIIQSHGE 364 (729)
Q Consensus 288 ~~~~~~~~~~~~~~~~~wspDG~l~~~~~-~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~-~w~~~~~-~~~~l~~~~~ 364 (729)
......+.-..++....|..+.++.++.. +.+....+-..|.. +......... .. .|....+ .-.++. +
T Consensus 279 ~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~r~~~~~~~~~cd~~-~~~~~~~~~~----~~~~W~~~~~~~~~~~~---d 350 (755)
T KOG2100|consen 279 PPPTNQRSGEYYVTNVKWDTTEKVLVVWTNREQNISVETLCDTP-GICRVVYEES----SDGGWVEHQNVEPVFSS---D 350 (755)
T ss_pred CCccccccCceEEEEEEEecCccEEEEEEccCCCeeeeEEecCc-ccceeeEecc----ccccccccccccceEee---c
Confidence 00000000003445567877766444433 31222223333333 2222221111 22 3665433 122222 3
Q ss_pred C-CEEEEEEEECC-eEEEEEEECCCC-ceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCc--eEEEEEcCCCcceeee
Q 004816 365 K-NLIACSYRQNG-RSYLGILDDFGH-SLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPS--SVAKVTLDDHKLKAVD 437 (729)
Q Consensus 365 ~-~~l~~~s~~~g-~~~ly~~d~~~g-~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~--~ly~~d~~~~~~~~lt 437 (729)
+ ..+++.+..++ ..|+..+...++ ..+.++.+.|.+..+ ...+...+++.+....+. .+|.+++.+...++||
T Consensus 351 ~~~~~~~~~~~~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~~~~~~lt 430 (755)
T KOG2100|consen 351 GSSYLKVDSVSDGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGSGTVESLT 430 (755)
T ss_pred CCceeEEEeeccCCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEcccccccccc
Confidence 3 44555666666 889988888777 778899999988766 224445555555554443 4888888765544444
Q ss_pred e----------eEEecC---------C--CCC--ccCC------------------------CCCCCcEEEEeeccCCCe
Q 004816 438 F----------KVVWSS---------S--PDT--LKYK------------------------SYFSLPELIEFPTEVPGQ 470 (729)
Q Consensus 438 ~----------~~~~~~---------~--~~~--~~~~------------------------~~~~~~~~~~~~~~~dG~ 470 (729)
- ...+.. . ..+ .+.. ..+...+...+.. +|.
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~p~~~~~~i~~--~~~ 508 (755)
T KOG2100|consen 431 CSLITGPCTYLSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVALPIVEFGKIEI--DGI 508 (755)
T ss_pred ccCCCCcceEEEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccCCcceeEEEEe--ccE
Confidence 2 011110 0 001 0000 0111122222222 688
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc---chhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI---LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~---~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
...+.+..|++.. +.+++|+||.+||||++..... .++....+..+|++|+.+|+||++++|.+++....+++
T Consensus 509 ~~~~~~~lP~~~~----~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~~G~~~~~~~~~~l 584 (755)
T KOG2100|consen 509 TANAILILPPNFD----PSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGGYGWDFRSALPRNL 584 (755)
T ss_pred EEEEEEecCCCCC----CCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCCcchhHHHHhhhhc
Confidence 8899999998854 4779999999999997544332 23444567788999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CC-CcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FR-DTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~-~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
|..++.|...+++++++.+.+|.+||+|+|+|+|||+++.++. .+ +.|+|+++.+|++|+. +.... +..+|+...
T Consensus 585 G~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~-~yds~--~terymg~p 661 (755)
T KOG2100|consen 585 GDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL-YYDST--YTERYMGLP 661 (755)
T ss_pred CCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee-eeccc--ccHhhcCCC
Confidence 9999999999999999999999999999999999999999998 54 8899999999999998 54433 335555544
Q ss_pred cCChhhhhhcCcccccCCCCCCE-EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHH
Q 004816 626 VGSEKDYYEKSPINFVDKFSCPI-ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQM 704 (729)
Q Consensus 626 ~~~~~~~~~~sp~~~~~~i~~Pv-L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 704 (729)
..+...|.+.++..++..++.|. |++||+.|..|+.+|+.+++++|+.+|+++.+++||++.|++.........+..+.
T Consensus 662 ~~~~~~y~e~~~~~~~~~~~~~~~LliHGt~DdnVh~q~s~~~~~aL~~~gv~~~~~vypde~H~is~~~~~~~~~~~~~ 741 (755)
T KOG2100|consen 662 SENDKGYEESSVSSPANNIKTPKLLLIHGTEDDNVHFQQSAILIKALQNAGVPFRLLVYPDENHGISYVEVISHLYEKLD 741 (755)
T ss_pred ccccchhhhccccchhhhhccCCEEEEEcCCcCCcCHHHHHHHHHHHHHCCCceEEEEeCCCCcccccccchHHHHHHHH
Confidence 44455699999999999999886 99999999999999999999999999999999999999999999888889999999
Q ss_pred HHHHHHhC
Q 004816 705 VFFARVVG 712 (729)
Q Consensus 705 ~fl~~~l~ 712 (729)
.||..++.
T Consensus 742 ~~~~~~~~ 749 (755)
T KOG2100|consen 742 RFLRDCFG 749 (755)
T ss_pred HHHHHHcC
Confidence 99998776
No 5
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=2e-32 Score=287.08 Aligned_cols=561 Identities=13% Similarity=0.087 Sum_probs=385.7
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCC-CcccCCCCCccc-ccccccCCceEEEECCEEEEEECCCC----cEEEEeC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDE-PSDITPKEYAVR-TTAQEYGGGAFRIFGDTVIFSNYKDQ----RLYKHSI 172 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~-~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~d~ 172 (729)
+...|+.+.. +++.+.++......++. .+.|++...-+. ...+..|+.+.+++.+.++++.+..| .|.+.|+
T Consensus 85 ~~~~Yy~r~~--~g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL 162 (682)
T COG1770 85 GPYEYYSRTE--EGKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDL 162 (682)
T ss_pred CCeeEEEEec--CCCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEec
Confidence 5566665543 46677776653332333 455554321111 12233345555555667888776554 6777888
Q ss_pred CCCCCC--CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC--CceEEeee--CCCeeeee
Q 004816 173 DSKDSS--PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQVLVS--GSDFYAFP 246 (729)
Q Consensus 173 ~~~~~~--~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g~~~~lt~--~~~~~~~~ 246 (729)
.+ ++ +..++. ....++|.+||+.++|++.+....| ..||.-.+.+ ..-+.|.. +..+..+.
T Consensus 163 ~t--g~~~~d~i~~-------~~~~~~Wa~d~~~lfYt~~d~~~rp----~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v 229 (682)
T COG1770 163 AT--GEELPDEITN-------TSGSFAWAADGKTLFYTRLDENHRP----DKVWRHRLGTPGSSDELVYEEKDDRFFLSV 229 (682)
T ss_pred cc--ccccchhhcc-------cccceEEecCCCeEEEEEEcCCCCc----ceEEEEecCCCCCcceEEEEcCCCcEEEEe
Confidence 87 43 223332 2367899999999999988765443 7899988887 55555654 34455556
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC--CCc-EEEEEecCCC-ce
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGE-LFFVTDRKNG-FW 322 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp--DG~-l~~~~~~~~g-~~ 322 (729)
.=|-+.++|+....++ ..+++++++.+ +.+..+..+.+... ....+. -|. +++.++. .| .+
T Consensus 230 ~~s~s~~yi~i~~~~~-----~tsE~~ll~a~-~p~~~p~vv~pr~~--------g~eY~~eh~~d~f~i~sN~-~gknf 294 (682)
T COG1770 230 GRSRSEAYIVISLGSH-----ITSEVRLLDAD-DPEAEPKVVLPREN--------GVEYSVEHGGDRFYILSNA-DGKNF 294 (682)
T ss_pred eeccCCceEEEEcCCC-----cceeEEEEecC-CCCCceEEEEEcCC--------CcEEeeeecCcEEEEEecC-CCcce
Confidence 6677778776544333 45789999998 55544444544442 122222 255 6666766 45 67
Q ss_pred EEEEEEc--CCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcce
Q 004816 323 NLHKWIE--SNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDI 400 (729)
Q Consensus 323 ~l~~~d~--~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v 400 (729)
.|++... ....++.+++......-. ++.. -.++|++.....|...|++.+.++++...|.-+....
T Consensus 295 ~l~~ap~~~~~~~w~~~I~h~~~~~l~-------~~~~-----f~~~lVl~eR~~glp~v~v~~~~~~~~~~i~f~~~ay 362 (682)
T COG1770 295 KLVRAPVSADKSNWRELIPHREDVRLE-------GVDL-----FADHLVLLERQEGLPRVVVRDRKTGEERGIAFDDEAY 362 (682)
T ss_pred EEEEccCCCChhcCeeeeccCCCceee-------eeee-----eccEEEEEecccCCceEEEEecCCCceeeEEecchhh
Confidence 7876554 223345554333211111 1111 3467888888889999999999888887776553321
Q ss_pred E-Ee----eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCCCCCCcEEEEeeccCCCeEEEEE
Q 004816 401 D-NI----TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKSYFSLPELIEFPTEVPGQKAYAY 475 (729)
Q Consensus 401 ~-~~----~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dG~~l~~~ 475 (729)
. .+ -.+...+.+..++.++|.++|-+|+.+++.+.|.+..+.. .+++... ..+.+..... ||..|+..
T Consensus 363 ~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~-----g~dp~~Y-~s~riwa~a~-dgv~VPVS 435 (682)
T COG1770 363 SAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG-----GFDPEDY-VSRRIWATAD-DGVQVPVS 435 (682)
T ss_pred hccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC-----CCChhHe-EEEEEEEEcC-CCcEeeEE
Confidence 1 11 3556789999999999999999999999987666544432 2444333 3467777776 99999999
Q ss_pred EEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHH
Q 004816 476 YYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC 555 (729)
Q Consensus 476 l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~ 555 (729)
+..-++.. ...+.|++|+.+|..+......|+...-.|.++||+....+.||++.-|+.|.+........+...|+
T Consensus 436 Lvyrkd~~----~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DF 511 (682)
T COG1770 436 LVYRKDTK----LDGSAPLLLYGYGAYGISMDPSFSIARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDF 511 (682)
T ss_pred EEEecccC----CCCCCcEEEEEeccccccCCcCcccceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHH
Confidence 88776522 25677999999999889888999987788999999999999999999999999988776677889999
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCCh-----
Q 004816 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSE----- 629 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----- 629 (729)
++++++|+++++.++++|+++|.|+||+++..++. .|++|+++|+..|+.|...-...........-...||++
T Consensus 512 Ia~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT~~E~~EWGNP~d~e~ 591 (682)
T COG1770 512 IAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLTVTEWDEWGNPLDPEY 591 (682)
T ss_pred HHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCCccchhhhCCcCCHHH
Confidence 99999999999999999999999999999998888 999999999999999975433222211111112233432
Q ss_pred -hhhhhcCcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCC---CEEEEEECCCCcc-cCCcccHHHHHHHH
Q 004816 630 -KDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL---PVALVEYEGEQHG-FRKAENIKFTLEQQ 703 (729)
Q Consensus 630 -~~~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~gH~-~~~~~~~~~~~~~~ 703 (729)
+.+..+||+.++..-. +|+|++.|.+|++|.+.+..++.++|++.+. ++-+..-.++||+ .+..-...+-....
T Consensus 592 y~yikSYSPYdNV~a~~YP~ilv~~Gl~D~rV~YwEpAKWvAkLR~~~td~~plLlkt~M~aGHgG~SgRf~~lee~A~e 671 (682)
T COG1770 592 YDYIKSYSPYDNVEAQPYPAILVTTGLNDPRVQYWEPAKWVAKLRELKTDGNPLLLKTNMDAGHGGASGRFQRLEEIAFE 671 (682)
T ss_pred HHHHhhcCchhccccCCCCceEEEccccCCccccchHHHHHHHHhhcccCCCcEEEEecccccCCCCCCchHHHHHHHHH
Confidence 3446789999887754 5799999999999999999999999999753 5667776799996 33323333344445
Q ss_pred HHHHHHHhC
Q 004816 704 MVFFARVVG 712 (729)
Q Consensus 704 ~~fl~~~l~ 712 (729)
..|+.+.++
T Consensus 672 YaF~l~~~~ 680 (682)
T COG1770 672 YAFLLKLAG 680 (682)
T ss_pred HHHHhhhcc
Confidence 667766554
No 6
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=100.00 E-value=3.1e-32 Score=268.04 Aligned_cols=205 Identities=35% Similarity=0.578 Sum_probs=178.7
Q ss_pred cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHH
Q 004816 509 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAA 588 (729)
Q Consensus 509 ~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~ 588 (729)
.|+...++|+++||+|+.+||||++|+|..|.....++++..+++|+.+++++|++++.+|++||+|+|+|+||++++.+
T Consensus 2 ~f~~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~ 81 (213)
T PF00326_consen 2 SFNWNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLA 81 (213)
T ss_dssp --SHHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHH
T ss_pred eeeHHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hh-CCCcceEEEEeccccChhHHhhhcchhhh-hhhhhh--cCChhhhhhcCcccccCC--CCCCEEEEEeCCCCCCChH
Q 004816 589 LA-FRDTFKAGASLYGVADLSMLRAETHKFES-RYIDNL--VGSEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPPD 662 (729)
Q Consensus 589 ~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~sp~~~~~~--i~~PvL~i~G~~D~~vp~~ 662 (729)
+. +|++|+++|+.+|+.|+..+......+.. .+.... ....+.|...+|+..+.+ +++|+|++||++|.+||++
T Consensus 82 ~~~~~~~f~a~v~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~P~li~hG~~D~~Vp~~ 161 (213)
T PF00326_consen 82 ATQHPDRFKAAVAGAGVSDLFSYYGTTDIYTKAEYLEYGDPWDNPEFYRELSPISPADNVQIKPPVLIIHGENDPRVPPS 161 (213)
T ss_dssp HHHTCCGSSEEEEESE-SSTTCSBHHTCCHHHGHHHHHSSTTTSHHHHHHHHHGGGGGGCGGGSEEEEEEETTBSSSTTH
T ss_pred hcccceeeeeeeccceecchhcccccccccccccccccCccchhhhhhhhhccccccccccCCCCEEEEccCCCCccCHH
Confidence 99 99999999999999998776654332222 222211 125677888999999998 8899999999999999999
Q ss_pred HHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCC
Q 004816 663 QARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGH 713 (729)
Q Consensus 663 ~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~ 713 (729)
++.+++++|+++|+++++++||+++|++..+++..+..+.+++||+++|+.
T Consensus 162 ~s~~~~~~L~~~g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~~l~~ 212 (213)
T PF00326_consen 162 QSLRLYNALRKAGKPVELLIFPGEGHGFGNPENRRDWYERILDFFDKYLKK 212 (213)
T ss_dssp HHHHHHHHHHHTTSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhcCCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999998899999999999999999983
No 7
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-27 Score=247.87 Aligned_cols=321 Identities=21% Similarity=0.249 Sum_probs=255.2
Q ss_pred eEEEEEEECCCCceEeeccCCcc-eE--EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCCCccCCC
Q 004816 377 RSYLGILDDFGHSLSLLDIPFTD-ID--NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPDTLKYKS 453 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~lt~~~~~-v~--~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~~~~~~~ 453 (729)
...|-+.+..+-..+.|..+... +. ....++..+++..++-.+|..+|+.++.+++++.+. .....+++.
T Consensus 318 ~~~l~v~~~~g~~~~~v~l~~~ga~~~~~~~~~g~ev~l~~t~F~tP~~~~r~~~~~~eLe~ik-------~~p~~FDa~ 390 (648)
T COG1505 318 SGRLEVYDLKGERIEEVELPPPGALGMGSADKDGDEVFLAFTSFTTPSTLYRLDLFGGELEVIR-------EQPVQFDAD 390 (648)
T ss_pred cceEEEeccCceEeeecccCCccceeeccCCCCCcEEEEEeecccCCCceEEEecCCceehhhh-------hccCCcCcc
Confidence 33566666666555666654332 22 335667888999999999999999999999875543 224455655
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCC
Q 004816 454 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 454 ~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
++ .+++....+. ||.+|++++.. ++.. .+ +.|++|+-+||..-...+.|......|.++|...+..|.||+|
T Consensus 391 ~~-~veQ~~atSk-DGT~IPYFiv~-K~~~----~d-~~pTll~aYGGF~vsltP~fs~~~~~WLerGg~~v~ANIRGGG 462 (648)
T COG1505 391 NY-EVEQFFATSK-DGTRIPYFIVR-KGAK----KD-ENPTLLYAYGGFNISLTPRFSGSRKLWLERGGVFVLANIRGGG 462 (648)
T ss_pred Cc-eEEEEEEEcC-CCccccEEEEe-cCCc----CC-CCceEEEeccccccccCCccchhhHHHHhcCCeEEEEecccCC
Confidence 55 4677777787 99999999997 5533 13 6799999999988888899998789999999999999999999
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~ 612 (729)
.||.+|+++..+......++|+.++++.|+++++..+++++|.|.|-||.++..+++ +|+.|.|+|+..|+.|+..|..
T Consensus 463 EfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v~evPllDMlRYh~ 542 (648)
T COG1505 463 EFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAVCEVPLLDMLRYHL 542 (648)
T ss_pred ccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCceeeccchhhhhhhcc
Confidence 999999999887777788999999999999999999999999999999999988888 9999999999999999988754
Q ss_pred hcc--hhhhhhhhhhc-CChhhhhhcCcccccCCC-C-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCC
Q 004816 613 ETH--KFESRYIDNLV-GSEKDYYEKSPINFVDKF-S-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687 (729)
Q Consensus 613 ~~~--~~~~~~~~~~~-~~~~~~~~~sp~~~~~~i-~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~g 687 (729)
-.. .+...|.+.-. .+.....++||+++++.- + +|+||..+..|.+|.|.|+++|+.+|++.+.++-+.+--++|
T Consensus 543 l~aG~sW~~EYG~Pd~P~d~~~l~~YSPy~nl~~g~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~~pv~~~e~t~gG 622 (648)
T COG1505 543 LTAGSSWIAEYGNPDDPEDRAFLLAYSPYHNLKPGQKYPPTLITTSLHDDRVHPAHARKFAAKLQEVGAPVLLREETKGG 622 (648)
T ss_pred cccchhhHhhcCCCCCHHHHHHHHhcCchhcCCccccCCCeEEEcccccccccchHHHHHHHHHHhcCCceEEEeecCCc
Confidence 321 11122211100 122456789999998873 3 689999999999999999999999999999999999999999
Q ss_pred cccCCcccH-HHHHHHHHHHHHHHhC
Q 004816 688 HGFRKAENI-KFTLEQQMVFFARVVG 712 (729)
Q Consensus 688 H~~~~~~~~-~~~~~~~~~fl~~~l~ 712 (729)
|+-..+... .+....++.||.+.|+
T Consensus 623 H~g~~~~~~~A~~~a~~~afl~r~L~ 648 (648)
T COG1505 623 HGGAAPTAEIARELADLLAFLLRTLG 648 (648)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHhhC
Confidence 986554333 5566778899988774
No 8
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-25 Score=233.11 Aligned_cols=491 Identities=17% Similarity=0.146 Sum_probs=312.3
Q ss_pred ceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEE
Q 004816 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWV 274 (729)
Q Consensus 196 ~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~ 274 (729)
...|||-++|+|.....+.+ ...+ +.++...++.- +.........+|.- ||+.|.|...++.+ ...+||.
T Consensus 143 s~~spD~~~ia~~~~~~~~e----~~~~-v~~~~~~~~~~-~~~~~g~~y~~w~~~dg~~l~~~t~~~~~---r~hkvy~ 213 (712)
T KOG2237|consen 143 SESSPDHKYIAYTKDTEGKE----LFTV-VIDVKFSGPVW-THDGKGVSYLAWAKQDGEDLLYGTEDENN---RPHKVYY 213 (712)
T ss_pred cccCCCceEEEEEEcCCCCc----ccee-eeeeccCCcee-eccCCceEeeeecccCCceeeeeeecccc---CcceEEE
Confidence 34789999999987765433 2344 66666554322 22334455677877 99988888877655 3456999
Q ss_pred EEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC---ceEEEEEEcCC---CeEEEeec---------
Q 004816 275 GYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG---FWNLHKWIESN---NEVLAIYS--------- 339 (729)
Q Consensus 275 ~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g---~~~l~~~d~~~---g~~~~l~~--------- 339 (729)
..+. +.+-..+.+....+.. .......-+.+|.+.+.+.. .+ ...+|..|... |....+.+
T Consensus 214 h~~G-tdq~~Dvl~~~e~d~~--~~vf~~~~kD~~~~~i~si~-~t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~ 289 (712)
T KOG2237|consen 214 HTLG-TDQSEDVLLYEEKDEP--KHVFISETKDSGFYTINSIS-ETCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFV 289 (712)
T ss_pred Eecc-cCCCcceEEEecCCCC--eEEEEEEEecCceEEEEEee-ccCCccceEEEEecccccCCcchheeeccchhhhhh
Confidence 8887 3333445555555411 11111122333444333333 22 33666666532 21100110
Q ss_pred cCcc--------------ccCCcccccCccee----------eeeec---------CCCCEEEEEEEECCeEEEE--EEE
Q 004816 340 LDAE--------------FSRPLWVFGINSYE----------IIQSH---------GEKNLIACSYRQNGRSYLG--ILD 384 (729)
Q Consensus 340 ~~~~--------------~~~~~w~~~~~~~~----------~l~~~---------~~~~~l~~~s~~~g~~~ly--~~d 384 (729)
+..+ ...|.......++. |...+ -++..+++....+-. ++- +.-
T Consensus 290 eh~~fi~~~~t~~~~~tn~~~p~y~l~r~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~-~i~q~~~~ 368 (712)
T KOG2237|consen 290 EHYDFITNEGTEFYFLTNKDAPNYYLLRIDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLK-HILQVRDL 368 (712)
T ss_pred hhhhheeccCcceeeeccCCCCceeEEeeeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCch-hhcccccc
Confidence 0000 00010000000000 00000 011111111111110 111 011
Q ss_pred CCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeeeeEEecCCCC--CccCCCCCCCcEE
Q 004816 385 DFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDFKVVWSSSPD--TLKYKSYFSLPEL 460 (729)
Q Consensus 385 ~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~~~~~~~~~~--~~~~~~~~~~~~~ 460 (729)
+++...+.+..+-+.+... ..+...+.|..++.-+|+.+|.+|++.++++ ..++..... +.++.+.. ..++
T Consensus 369 l~g~~~~~fpLpv~sv~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e----~~vf~e~~~~lpg~~~s~y-~~~r 443 (712)
T KOG2237|consen 369 LDGSLLRSFPLPVGSVSGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANGKPE----PSVFREITVVLPGFDASDY-VVER 443 (712)
T ss_pred ccCceeeeecCCCCcccccccCCCCceEEEEEeccCCCCeEEEeeccCCCCC----CcceeeeccccCcccccce-EEEE
Confidence 2333444444444444444 3445678888999999999999999998652 223333221 34444433 5788
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
+++++. ||..++..+..-+... ...+.|++|+.||+.+-...+.|......|..+|+..+..|.||+|++|.+|+
T Consensus 444 ~~~~Sk-DGt~VPM~Iv~kk~~k----~dg~~P~LLygYGay~isl~p~f~~srl~lld~G~Vla~a~VRGGGe~G~~WH 518 (712)
T KOG2237|consen 444 IEVSSK-DGTKVPMFIVYKKDIK----LDGSKPLLLYGYGAYGISLDPSFRASRLSLLDRGWVLAYANVRGGGEYGEQWH 518 (712)
T ss_pred EEEecC-CCCccceEEEEechhh----hcCCCceEEEEecccceeeccccccceeEEEecceEEEEEeeccCcccccchh
Confidence 999998 9999999988754422 24578999999999888888888887777888999999999999999999999
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc--chh
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET--HKF 617 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~--~~~ 617 (729)
+........+..+|++++++||++++++.++|+++.|.|.||.++..++. +|++|+|+|+..|+.|+......+ +..
T Consensus 519 k~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt 598 (712)
T KOG2237|consen 519 KDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLT 598 (712)
T ss_pred hccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccc
Confidence 99887777788999999999999999999999999999999999988888 999999999999999987654322 222
Q ss_pred hhhhhhhhcCC---hhhhhhcCcccccCCCC-----CCEEEEEeCCCCCCChHHHHHHHHHHHhC-------CCCEEEEE
Q 004816 618 ESRYIDNLVGS---EKDYYEKSPINFVDKFS-----CPIILFQGLEDKVVPPDQARKIYKALKEN-------GLPVALVE 682 (729)
Q Consensus 618 ~~~~~~~~~~~---~~~~~~~sp~~~~~~i~-----~PvL~i~G~~D~~vp~~~~~~~~~~l~~~-------g~~~~~~~ 682 (729)
...| ..+++ .+.+...+|+...++++ +.+|+..+.+|.+|++.++.++.++|+.+ ..++-+.+
T Consensus 599 ~sd~--ee~g~p~~~~~~~~i~~y~pv~~i~~q~~YPS~lvtta~hD~RV~~~~~~K~vAklre~~~~~~~q~~pvll~i 676 (712)
T KOG2237|consen 599 TSDY--EEWGNPEDFEDLIKISPYSPVDNIKKQVQYPSMLVTTADHDDRVGPLESLKWVAKLREATCDSLKQTNPVLLRI 676 (712)
T ss_pred hhhh--cccCChhhhhhhheecccCccCCCchhccCcceEEeeccCCCcccccchHHHHHHHHHHhhcchhcCCCEEEEE
Confidence 2222 12233 34455566666666654 34899999999999999999999999875 13678999
Q ss_pred ECCCCcccCCccc-HHHHHHHHHHHHHHHhC
Q 004816 683 YEGEQHGFRKAEN-IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 683 ~~~~gH~~~~~~~-~~~~~~~~~~fl~~~l~ 712 (729)
..++||+...+.. ..+-.....+|+.+.+.
T Consensus 677 ~~~agH~~~~~~~k~~~E~a~~yaFl~K~~~ 707 (712)
T KOG2237|consen 677 ETKAGHGAEKPRFKQIEEAAFRYAFLAKMLN 707 (712)
T ss_pred ecCCccccCCchHHHHHHHHHHHHHHHHHhc
Confidence 9999998654322 23444567788888776
No 9
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=5.2e-23 Score=221.94 Aligned_cols=248 Identities=16% Similarity=0.158 Sum_probs=182.2
Q ss_pred CCEEEEEECC--------CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCE--EEEEEeccCCCCCCcceEE
Q 004816 154 GDTVIFSNYK--------DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR--YVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 154 ~~~i~~~~~~--------~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~--l~~~~~~~~~~~~~~~~~l 223 (729)
+.+|+|+... ..+||++|.++ +.+++||... .....|+|||||++ ++|++...+ ..+|
T Consensus 146 ~~~iayv~~~~~~~~~~~~~~l~~~d~dG--~~~~~lt~~~----~~~~sP~wSPDG~~~~~~y~S~~~g------~~~I 213 (428)
T PRK01029 146 SGKIIFSLSTTNSDTELKQGELWSVDYDG--QNLRPLTQEH----SLSITPTWMHIGSGFPYLYVSYKLG------VPKI 213 (428)
T ss_pred cCEEEEEEeeCCcccccccceEEEEcCCC--CCceEcccCC----CCcccceEccCCCceEEEEEEccCC------CceE
Confidence 6788888653 23899999998 8899999862 33478999999987 455765442 3689
Q ss_pred EEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEE--EecCCCCe-eeeEEecCCCCCccccc
Q 004816 224 VAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG--YISENGDV-YKRVCVAGFDPTIVESP 300 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~--d~~~~g~~-~~~~~~~~~~~~~~~~~ 300 (729)
|++++++|+.++|+...+....|+|||||++|+|+.. ..+ ..++|+. +++ ++.. ....++.+.. ...
T Consensus 214 ~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~-~~g----~~di~~~~~~~~-~g~~g~~~~lt~~~~----~~~ 283 (428)
T PRK01029 214 FLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISD-RYG----NPDLFIQSFSLE-TGAIGKPRRLLNEAF----GTQ 283 (428)
T ss_pred EEEECCCCCceEeecCCCCccceEECCCCCEEEEEEC-CCC----CcceeEEEeecc-cCCCCcceEeecCCC----CCc
Confidence 9999999999999876666677999999999999983 222 3457775 554 3211 1233443322 233
Q ss_pred cCceeCCCCc-EEEEEecCCCceEEEEEEcC--CCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 301 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIES--NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 301 ~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~--~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
..|.|||||+ |+|.++. .|..+||+++++ +++.+.|+........+.|++ |++.|++.....|.
T Consensus 284 ~~p~wSPDG~~Laf~s~~-~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP------------DG~~Laf~~~~~g~ 350 (428)
T PRK01029 284 GNPSFSPDGTRLVFVSNK-DGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP------------DGKKIAFCSVIKGV 350 (428)
T ss_pred CCeEECCCCCEEEEEECC-CCCceEEEEECcccccceEEeccCCCCccceeECC------------CCCEEEEEEcCCCC
Confidence 5789999999 9999887 677899999875 355777775555556788887 88999999888888
Q ss_pred EEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 378 SYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
.+||++|+++++.++|+.....+... +++++.++|. +.......||++++++++.++|+
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~-~~~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYS-AGNSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEE-ECCCCCceEEEEECCCCCEEEee
Confidence 89999999999999998764333333 4455555554 44455678999999999877665
No 10
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.92 E-value=6e-23 Score=221.48 Aligned_cols=264 Identities=13% Similarity=0.203 Sum_probs=192.8
Q ss_pred ccCceEEcCCCcEEEEeecCCC---CCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCE--EEEEECCC
Q 004816 90 RLGGTAVDGHGRLIWLESRPTE---AGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT--VIFSNYKD 164 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~---~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~ 164 (729)
-.+.+.+. +.++.|+..+.+. ..+..||..+.+| +.+++|+...... ....|+++++. ++|++..+
T Consensus 138 ~tg~~g~~-~~~iayv~~~~~~~~~~~~~~l~~~d~dG-~~~~~lt~~~~~~-------~sP~wSPDG~~~~~~y~S~~~ 208 (428)
T PRK01029 138 LTGVPGIS-SGKIIFSLSTTNSDTELKQGELWSVDYDG-QNLRPLTQEHSLS-------ITPTWMHIGSGFPYLYVSYKL 208 (428)
T ss_pred HcCCCccc-cCEEEEEEeeCCcccccccceEEEEcCCC-CCceEcccCCCCc-------ccceEccCCCceEEEEEEccC
Confidence 34567777 8999999765432 2366899998883 4788888643111 23568888776 56677655
Q ss_pred C--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE--EcCC---CceEEee
Q 004816 165 Q--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI--ALNG---QNIQVLV 237 (729)
Q Consensus 165 ~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~--dl~~---g~~~~lt 237 (729)
+ +||++++++ ++.++|+... .....++|||||++|+|+.+..+ ..++|+. ++++ ++.++|+
T Consensus 209 g~~~I~~~~l~~--g~~~~lt~~~----g~~~~p~wSPDG~~Laf~s~~~g------~~di~~~~~~~~~g~~g~~~~lt 276 (428)
T PRK01029 209 GVPKIFLGSLEN--PAGKKILALQ----GNQLMPTFSPRKKLLAFISDRYG------NPDLFIQSFSLETGAIGKPRRLL 276 (428)
T ss_pred CCceEEEEECCC--CCceEeecCC----CCccceEECCCCCEEEEEECCCC------CcceeEEEeecccCCCCcceEee
Confidence 4 899999998 8889998763 22356899999999999986432 2356664 5554 5678888
Q ss_pred eCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 238 SGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 238 ~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
.+. .....|+|||||++|+|++. +.+ ..+||+++++..+.. .+.+.... .....+.|||||+ |+|..
T Consensus 277 ~~~~~~~~~p~wSPDG~~Laf~s~-~~g----~~~ly~~~~~~~g~~--~~~lt~~~----~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 277 NEAFGTQGNPSFSPDGTRLVFVSN-KDG----RPRIYIMQIDPEGQS--PRLLTKKY----RNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred cCCCCCcCCeEECCCCCEEEEEEC-CCC----CceEEEEECcccccc--eEEeccCC----CCccceeECCCCCEEEEEE
Confidence 653 34567999999999999983 322 357999988622221 22222222 3446799999999 99988
Q ss_pred ecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 316 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
.. .+..+|+++|+++++.+.|+........+.|++ |++.|++.+...+...||++++++++.++|+.
T Consensus 346 ~~-~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSp------------DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 346 VI-KGVRQICVYDLATGRDYQLTTSPENKESPSWAI------------DSLHLVYSAGNSNESELYLISLITKKTRKIVI 412 (428)
T ss_pred cC-CCCcEEEEEECCCCCeEEccCCCCCccceEECC------------CCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence 77 677899999999999999986554556788886 88899999888888999999999999998886
Q ss_pred CCc
Q 004816 396 PFT 398 (729)
Q Consensus 396 ~~~ 398 (729)
...
T Consensus 413 ~~g 415 (428)
T PRK01029 413 GSG 415 (428)
T ss_pred CCC
Confidence 543
No 11
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=4.6e-22 Score=215.66 Aligned_cols=244 Identities=14% Similarity=0.163 Sum_probs=183.0
Q ss_pred CEEEEEECCC-----CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 155 DTVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 155 ~~i~~~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
++|+|+.... .+||++|.++ ...++++.. ......++|||||++|+|++.... ..+||+++++
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg--~~~~~lt~~----~~~~~~p~wSPDG~~la~~s~~~g------~~~i~i~dl~ 231 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDG--YNQFVVHRS----PQPLMSPAWSPDGSKLAYVTFESG------RSALVIQTLA 231 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCC--CCCEEeecC----CCceeeeEEcCCCCEEEEEEecCC------CcEEEEEECC
Confidence 5788876532 2899999997 788889876 345678999999999999875432 3579999999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+|+.++|+...+....|.|||||++|+|+.... ...+||++|++ +++. ..+... . .....+.|+|||
T Consensus 232 ~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-----g~~~I~~~d~~-tg~~--~~lt~~-~----~~~~~~~wSPDG 298 (429)
T PRK03629 232 NGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-----GSLNLYVMDLA-SGQI--RQVTDG-R----SNNTEPTWFPDS 298 (429)
T ss_pred CCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC-----CCcEEEEEECC-CCCE--EEccCC-C----CCcCceEECCCC
Confidence 999999887666667899999999999987332 23569999998 6765 333333 2 345689999999
Q ss_pred c-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC
Q 004816 310 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 388 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g 388 (729)
+ |+|.+++ .+..+||++|+++++.++++........+.|++ |++.|++....++..+||+++++++
T Consensus 299 ~~I~f~s~~-~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------DG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 299 QNLAYTSDQ-AGRPQVYKVNINGGAPQRITWEGSQNQDADVSS------------DGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred CEEEEEeCC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEEccCCCceEEEEECCCC
Confidence 9 9999887 677899999999998888875433344566765 8889998888888889999999999
Q ss_pred ceEeeccCCcce-EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 389 SLSLLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 389 ~~~~lt~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
+.+.|+...... ..+++++.. +++.+.......|++++++++..++|+
T Consensus 366 ~~~~Lt~~~~~~~p~~SpDG~~-i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 366 GVQVLTDTFLDETPSIAPNGTM-VIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CeEEeCCCCCCCCceECCCCCE-EEEEEcCCCceEEEEEECCCCCeEECc
Confidence 999998654222 223555544 445554555566999999887765553
No 12
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.91 E-value=4.3e-22 Score=217.26 Aligned_cols=245 Identities=15% Similarity=0.196 Sum_probs=186.7
Q ss_pred CCEEEEEECCCC------cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 154 GDTVIFSNYKDQ------RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 154 ~~~i~~~~~~~~------~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
..+|+|+....+ +||++|.++ ...++|+.. ......++|||||++|+|+..... ..+||++|
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg--~~~~~lt~~----~~~v~~p~wSpDG~~lay~s~~~g------~~~i~~~d 232 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDG--ANVRYLTDG----SSLVLTPRFSPNRQEITYMSYANG------RPRVYLLD 232 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCC--CCcEEEecC----CCCeEeeEECCCCCEEEEEEecCC------CCEEEEEE
Confidence 458888875433 899999987 888999976 345678999999999999976442 25899999
Q ss_pred cCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 228 LNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 228 l~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
+++|+.++++...+....|+|||||++|+|..... ...+||++|++ +++. .++.. .. .....+.|+|
T Consensus 233 l~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~--~~Lt~-~~----~~~~~~~~sp 299 (435)
T PRK05137 233 LETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG-----GNTDIYTMDLR-SGTT--TRLTD-SP----AIDTSPSYSP 299 (435)
T ss_pred CCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC-----CCceEEEEECC-CCce--EEccC-CC----CccCceeEcC
Confidence 99999999987666667899999999999987432 24679999998 6765 23332 22 3345799999
Q ss_pred CCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 308 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 308 DG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
||+ |+|.+++ .+..+||++|+++++.++|+........+.|++ +++.|++.....+..+|++++++
T Consensus 300 DG~~i~f~s~~-~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~Sp------------dG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 300 DGSQIVFESDR-SGSPQLYVMNADGSNPRRISFGGGRYSTPVWSP------------RGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred CCCEEEEEECC-CCCCeEEEEECCCCCeEEeecCCCcccCeEECC------------CCCEEEEEEcCCCceEEEEEECC
Confidence 999 9998877 677899999999999999986555556678887 88899888877777899999998
Q ss_pred CCceEeeccCCcceEE--eeeeCCEEEEEEeCCCCC--ceEEEEEcCCCcceeee
Q 004816 387 GHSLSLLDIPFTDIDN--ITLGNDCLFVEGASGVEP--SSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 387 ~g~~~~lt~~~~~v~~--~~~~~~~~~~~~~~~~~~--~~ly~~d~~~~~~~~lt 437 (729)
++..+.++.+. .+.. ++++++.++|........ ..||++++++++.++|+
T Consensus 367 ~~~~~~lt~~~-~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 367 GSGERILTSGF-LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred CCceEeccCCC-CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 88888887653 2332 355666666655544432 57999999888765543
No 13
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.2e-21 Score=209.87 Aligned_cols=251 Identities=10% Similarity=0.065 Sum_probs=185.2
Q ss_pred EEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCE-EEEEECC--CCcEEEEe
Q 004816 95 AVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDT-VIFSNYK--DQRLYKHS 171 (729)
Q Consensus 95 ~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~--~~~l~~~d 171 (729)
.|+ .+.+|++.... ..++.||..+.++. .++.++..... -...|+++++. ++|++.. ..+||++|
T Consensus 152 ~f~-~r~~~v~~~~~--~~~~~l~~~d~dg~-~~~~~~~~~~~--------~~p~wSpDG~~~i~y~s~~~~~~~Iyv~d 219 (419)
T PRK04043 152 DWM-KRKVVFSKYTG--PKKSNIVLADYTLT-YQKVIVKGGLN--------IFPKWANKEQTAFYYTSYGERKPTLYKYN 219 (419)
T ss_pred Cce-eeEEEEEEccC--CCcceEEEECCCCC-ceeEEccCCCe--------EeEEECCCCCcEEEEEEccCCCCEEEEEE
Confidence 455 56666665321 23678999988833 45556543211 13567777875 6776655 35999999
Q ss_pred CCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCC
Q 004816 172 IDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPR 251 (729)
Q Consensus 172 ~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPD 251 (729)
+.+ ++.++|+... .....+.|||||++|+|+....+ ..+||++++++++.++||........|.||||
T Consensus 220 l~t--g~~~~lt~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPD 287 (419)
T PRK04043 220 LYT--GKKEKIASSQ----GMLVVSDVSKDGSKLLLTMAPKG------QPDIYLYDTNTKTLTQITNYPGIDVNGNFVED 287 (419)
T ss_pred CCC--CcEEEEecCC----CcEEeeEECCCCCEEEEEEccCC------CcEEEEEECCCCcEEEcccCCCccCccEECCC
Confidence 998 8899998752 33356789999999999976532 36899999999999999987766678999999
Q ss_pred CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCC-----CceEEE
Q 004816 252 GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN-----GFWNLH 325 (729)
Q Consensus 252 G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~-----g~~~l~ 325 (729)
|++|+|++ ++. ...+||++|++ +|+..+ ++... . ..+.|||||+ |+|+..... +..+|+
T Consensus 288 G~~I~F~S-dr~----g~~~Iy~~dl~-~g~~~r--lt~~g-----~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~ 352 (419)
T PRK04043 288 DKRIVFVS-DRL----GYPNIFMKKLN-SGSVEQ--VVFHG-----K--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLY 352 (419)
T ss_pred CCEEEEEE-CCC----CCceEEEEECC-CCCeEe--CccCC-----C--cCceECCCCCEEEEEEcCCCcccCCCCcEEE
Confidence 99999998 433 34689999998 677533 33222 1 1358999999 888876521 337899
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCC
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 397 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~ 397 (729)
++|+++++.+.|+... ....|.|+| |++.|+|.+...+...|+.+++++.....|....
T Consensus 353 v~d~~~g~~~~LT~~~-~~~~p~~SP------------DG~~I~f~~~~~~~~~L~~~~l~g~~~~~l~~~~ 411 (419)
T PRK04043 353 LISTNSDYIRRLTANG-VNQFPRFSS------------DGGSIMFIKYLGNQSALGIIRLNYNKSFLFPLKV 411 (419)
T ss_pred EEECCCCCeEECCCCC-CcCCeEECC------------CCCEEEEEEccCCcEEEEEEecCCCeeEEeecCC
Confidence 9999999999998643 334688887 8999999998888889999999988777776533
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.6e-21 Score=208.69 Aligned_cols=230 Identities=10% Similarity=0.036 Sum_probs=172.0
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCE-EEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFY 243 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~-l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~ 243 (729)
.+||++|.++ ...++++.. . ....++|||||++ ++|++.... ..+||++|+++|+.++|+...+..
T Consensus 169 ~~l~~~d~dg--~~~~~~~~~----~-~~~~p~wSpDG~~~i~y~s~~~~------~~~Iyv~dl~tg~~~~lt~~~g~~ 235 (419)
T PRK04043 169 SNIVLADYTL--TYQKVIVKG----G-LNIFPKWANKEQTAFYYTSYGER------KPTLYKYNLYTGKKEKIASSQGML 235 (419)
T ss_pred ceEEEECCCC--CceeEEccC----C-CeEeEEECCCCCcEEEEEEccCC------CCEEEEEECCCCcEEEEecCCCcE
Confidence 4999999997 778888876 2 3467899999997 555554321 258999999999999998766666
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCce
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 322 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~ 322 (729)
..|.|||||++|+|+.... ...+||++|++ +++.++ ++... .....+.|+|||+ |+|++++ .+..
T Consensus 236 ~~~~~SPDG~~la~~~~~~-----g~~~Iy~~dl~-~g~~~~--LT~~~-----~~d~~p~~SPDG~~I~F~Sdr-~g~~ 301 (419)
T PRK04043 236 VVSDVSKDGSKLLLTMAPK-----GQPDIYLYDTN-TKTLTQ--ITNYP-----GIDVNGNFVEDDKRIVFVSDR-LGYP 301 (419)
T ss_pred EeeEECCCCCEEEEEEccC-----CCcEEEEEECC-CCcEEE--cccCC-----CccCccEECCCCCEEEEEECC-CCCc
Confidence 7799999999999988432 35789999998 676533 33222 2235789999999 9999988 7888
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC------CeEEEEEEECCCCceEeeccC
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN------GRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~------g~~~ly~~d~~~g~~~~lt~~ 396 (729)
+||++|+++|+.++++.... . .+.|++ +++.|++..... +..+||+++++++..++|+..
T Consensus 302 ~Iy~~dl~~g~~~rlt~~g~-~-~~~~SP------------DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 302 NIFMKKLNSGSVEQVVFHGK-N-NSSVST------------YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred eEEEEECCCCCeEeCccCCC-c-CceECC------------CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC
Confidence 99999999999988884321 1 346776 888888887654 447999999999999999976
Q ss_pred Ccce-EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 397 FTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 397 ~~~v-~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.... ..++++++.++|. +.......|+.+++++....+|
T Consensus 368 ~~~~~p~~SPDG~~I~f~-~~~~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 368 GVNQFPRFSSDGGSIMFI-KYLGNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred CCcCCeEECCCCCEEEEE-EccCCcEEEEEEecCCCeeEEe
Confidence 4332 3335666655555 4445556799999988765444
No 15
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=1.5e-21 Score=212.35 Aligned_cols=242 Identities=15% Similarity=0.176 Sum_probs=180.2
Q ss_pred EEEEEECCC-----CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 156 TVIFSNYKD-----QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 156 ~i~~~~~~~-----~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
+|+|+.... .+||++|.++ ...++|+.. ......++|||||++|+|++.... ..+||++|+++
T Consensus 184 riayv~~~~~~~~~~~l~i~d~dG--~~~~~l~~~----~~~~~~p~wSPDG~~La~~s~~~g------~~~L~~~dl~t 251 (448)
T PRK04792 184 RIAYVVVNDKDKYPYQLMIADYDG--YNEQMLLRS----PEPLMSPAWSPDGRKLAYVSFENR------KAEIFVQDIYT 251 (448)
T ss_pred EEEEEEeeCCCCCceEEEEEeCCC--CCceEeecC----CCcccCceECCCCCEEEEEEecCC------CcEEEEEECCC
Confidence 666765432 2899999987 777888876 345678999999999999976532 36899999999
Q ss_pred CceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 231 QNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 231 g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
|+.++++...+....|.|||||++|+|+.... ...+||++|++ +++... +.. .. .....+.|+|||+
T Consensus 252 g~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~dl~-tg~~~~--lt~-~~----~~~~~p~wSpDG~ 318 (448)
T PRK04792 252 QVREKVTSFPGINGAPRFSPDGKKLALVLSKD-----GQPEIYVVDIA-TKALTR--ITR-HR----AIDTEPSWHPDGK 318 (448)
T ss_pred CCeEEecCCCCCcCCeeECCCCCEEEEEEeCC-----CCeEEEEEECC-CCCeEE--Ccc-CC----CCccceEECCCCC
Confidence 99888887655556899999999999987433 24679999998 676532 322 22 3346789999999
Q ss_pred -EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 311 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 311 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
|+|.++. .+..+||++|+++++.+.|+........+.|++ |++.|++.+...+..+||++++++++
T Consensus 319 ~I~f~s~~-~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp------------DG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 319 SLIFTSER-GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP------------DGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred EEEEEECC-CCCceEEEEECCCCCEEEEecCCCCCcCeeECC------------CCCEEEEEEecCCceEEEEEECCCCC
Confidence 8898877 677899999999999888874332333466776 88899998887888899999999999
Q ss_pred eEeeccCCcceE-EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 390 LSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 390 ~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.+.|+....+.. .++++++.++|. +.......+|.++.+++..++|
T Consensus 386 ~~~lt~~~~d~~ps~spdG~~I~~~-~~~~g~~~l~~~~~~G~~~~~l 432 (448)
T PRK04792 386 MQVLTSTRLDESPSVAPNGTMVIYS-TTYQGKQVLAAVSIDGRFKARL 432 (448)
T ss_pred eEEccCCCCCCCceECCCCCEEEEE-EecCCceEEEEEECCCCceEEC
Confidence 988886543322 335555555544 4455556799999877765544
No 16
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.90 E-value=3e-21 Score=209.24 Aligned_cols=251 Identities=12% Similarity=0.092 Sum_probs=189.0
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~ 176 (729)
.++++|+..+.++..++.||.++.++ +..+.++.... ......|+++++.|+|..... .+||++++.+
T Consensus 163 ~~riayv~~~~~~~~~~~l~~~d~dg-~~~~~lt~~~~-------~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~-- 232 (429)
T PRK03629 163 RTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQ-------PLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN-- 232 (429)
T ss_pred CCeEEEEEeeCCCCcceeEEEEcCCC-CCCEEeecCCC-------ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 46788887655445577899998873 35666765431 122456888888999986543 4899999998
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++|+... .....+.|||||++|+|+....+ ..+||++|+++++.++++.+......|.|||||++|+
T Consensus 233 G~~~~l~~~~----~~~~~~~~SPDG~~La~~~~~~g------~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~ 302 (429)
T PRK03629 233 GAVRQVASFP----RHNGAPAFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 302 (429)
T ss_pred CCeEEccCCC----CCcCCeEECCCCCEEEEEEcCCC------CcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEE
Confidence 8888888652 23467899999999999865432 2479999999999999998766678899999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|++ ++.+ ..+||++|++ +++.. ++.... .....+.|||||+ |+|.... .+..+|+++|+++++.+
T Consensus 303 f~s-~~~g----~~~Iy~~d~~-~g~~~--~lt~~~-----~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 303 YTS-DQAG----RPQVYKVNIN-GGAPQ--RITWEG-----SQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ 368 (429)
T ss_pred EEe-CCCC----CceEEEEECC-CCCeE--EeecCC-----CCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeE
Confidence 998 3322 3579999998 66653 232221 3345789999999 8887766 66778999999999988
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
.|+.. .....|.|++ |++.|++.+.+.+...|++++++++..+.|+..
T Consensus 369 ~Lt~~-~~~~~p~~Sp------------DG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~ 416 (429)
T PRK03629 369 VLTDT-FLDETPSIAP------------NGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT 416 (429)
T ss_pred EeCCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCCeEECccC
Confidence 88843 2334677876 889999999887888899999998888888653
No 17
>PRK13604 luxD acyl transferase; Provisional
Probab=99.90 E-value=4.1e-22 Score=198.77 Aligned_cols=213 Identities=14% Similarity=0.110 Sum_probs=155.9
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCC-CCCchhHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFR 540 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs-~g~g~~~~ 540 (729)
-+.+. +|..|.||+..|.+.. .++.++||++||..... ..+..++.+|+++||+|+.+|+||+ |.++.++.
T Consensus 13 ~~~~~-dG~~L~Gwl~~P~~~~-----~~~~~~vIi~HGf~~~~--~~~~~~A~~La~~G~~vLrfD~rg~~GeS~G~~~ 84 (307)
T PRK13604 13 VICLE-NGQSIRVWETLPKENS-----PKKNNTILIASGFARRM--DHFAGLAEYLSSNGFHVIRYDSLHHVGLSSGTID 84 (307)
T ss_pred eEEcC-CCCEEEEEEEcCcccC-----CCCCCEEEEeCCCCCCh--HHHHHHHHHHHHCCCEEEEecCCCCCCCCCCccc
Confidence 35566 8999999999997521 45678999999974432 3477899999999999999999876 55554443
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchh---
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKF--- 617 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~--- 617 (729)
.... .. ...|+.++++|+.++ +.++|+|+||||||.+++.++..+ .++++|+.+|+.++..+......+
T Consensus 85 ~~t~-s~---g~~Dl~aaid~lk~~---~~~~I~LiG~SmGgava~~~A~~~-~v~~lI~~sp~~~l~d~l~~~~~~~~~ 156 (307)
T PRK13604 85 EFTM-SI---GKNSLLTVVDWLNTR---GINNLGLIAASLSARIAYEVINEI-DLSFLITAVGVVNLRDTLERALGYDYL 156 (307)
T ss_pred cCcc-cc---cHHHHHHHHHHHHhc---CCCceEEEEECHHHHHHHHHhcCC-CCCEEEEcCCcccHHHHHHHhhhcccc
Confidence 2211 11 279999999999886 346899999999999987666644 499999999999977554421111
Q ss_pred --hh----h---hh------hhhcCCh---hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 618 --ES----R---YI------DNLVGSE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 618 --~~----~---~~------~~~~~~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
.. . +. ..+..+. ..+...+|+..+++++.|+|+|||.+|..||++++++++++++. .+++
T Consensus 157 ~~p~~~lp~~~d~~g~~l~~~~f~~~~~~~~~~~~~s~i~~~~~l~~PvLiIHG~~D~lVp~~~s~~l~e~~~s--~~kk 234 (307)
T PRK13604 157 SLPIDELPEDLDFEGHNLGSEVFVTDCFKHGWDTLDSTINKMKGLDIPFIAFTANNDSWVKQSEVIDLLDSIRS--EQCK 234 (307)
T ss_pred cCcccccccccccccccccHHHHHHHHHhcCccccccHHHHHhhcCCCEEEEEcCCCCccCHHHHHHHHHHhcc--CCcE
Confidence 00 0 00 0000000 11123566677888999999999999999999999999999764 3679
Q ss_pred EEEECCCCcccCC
Q 004816 680 LVEYEGEQHGFRK 692 (729)
Q Consensus 680 ~~~~~~~gH~~~~ 692 (729)
++++||++|.+..
T Consensus 235 l~~i~Ga~H~l~~ 247 (307)
T PRK13604 235 LYSLIGSSHDLGE 247 (307)
T ss_pred EEEeCCCccccCc
Confidence 9999999999864
No 18
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=4.2e-21 Score=209.48 Aligned_cols=250 Identities=14% Similarity=0.183 Sum_probs=186.5
Q ss_pred CCcEEEEeecCC-CCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCC
Q 004816 99 HGRLIWLESRPT-EAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (729)
Q Consensus 99 g~~~~~~~~~~~-~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~ 175 (729)
..+++|+..... +..+..||.++.+ ++..++++.....+ ....|+++++.|+|..... .+||++++.+
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~d-g~~~~~lt~~~~~v-------~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~- 235 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQD-GANVRYLTDGSSLV-------LTPRFSPNRQEITYMSYANGRPRVYLLDLET- 235 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCC-CCCcEEEecCCCCe-------EeeEECCCCCEEEEEEecCCCCEEEEEECCC-
Confidence 678999876432 1226789988877 33567777543111 1345777788999987543 4899999998
Q ss_pred CCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeE
Q 004816 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERM 255 (729)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~l 255 (729)
++.++|+... .....++|||||++|+|+..... ..+||++|+++++.++|+........|.|||||++|
T Consensus 236 -g~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 236 -GQRELVGNFP----GMTFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred -CcEEEeecCC----CcccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCCCCccCceeEcCCCCEE
Confidence 8888888652 33467899999999999876442 367999999999999999877667789999999999
Q ss_pred EEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE
Q 004816 256 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
+|.+ ++.+ ..+||++|++ +++.. ++..+ . .....+.|||||+ |+|.... .+..+|+++|++++..
T Consensus 305 ~f~s-~~~g----~~~Iy~~d~~-g~~~~--~lt~~-~----~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~ 370 (435)
T PRK05137 305 VFES-DRSG----SPQLYVMNAD-GSNPR--RISFG-G----GRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE 370 (435)
T ss_pred EEEE-CCCC----CCeEEEEECC-CCCeE--EeecC-C----CcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce
Confidence 9988 3332 3579999988 66653 33332 2 3445789999999 8888765 5678999999988877
Q ss_pred EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe---EEEEEEECCCCceEeecc
Q 004816 335 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR---SYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 335 ~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~---~~ly~~d~~~g~~~~lt~ 395 (729)
+.++.. .....+.|++ |++.|++.+...+. ..||.++++++..+.|+.
T Consensus 371 ~~lt~~-~~~~~p~~sp------------DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~ 421 (435)
T PRK05137 371 RILTSG-FLVEGPTWAP------------NGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPT 421 (435)
T ss_pred EeccCC-CCCCCCeECC------------CCCEEEEEEccCCCCCcceEEEEECCCCceEEccC
Confidence 777643 3455678876 88899998876655 689999999988887764
No 19
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=5.4e-21 Score=207.55 Aligned_cols=243 Identities=14% Similarity=0.118 Sum_probs=178.6
Q ss_pred CEEEEEECCC--CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 155 DTVIFSNYKD--QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 155 ~~i~~~~~~~--~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
.+|+|..... .+||++|.++ ...++++.. ...+..++|||||++|+|+..... ..+||++|+++|+
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG--~~~~~l~~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~I~~~dl~~g~ 231 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADG--QNAQSALSS----PEPIISPAWSPDGTKLAYVSFESK------KPVVYVHDLATGR 231 (427)
T ss_pred cEEEEEEccCCccEEEEECCCC--CCceEeccC----CCCcccceEcCCCCEEEEEEccCC------CcEEEEEECCCCC
Confidence 5788887543 3899999987 777888765 345678999999999999875432 3579999999999
Q ss_pred eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-E
Q 004816 233 IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-L 311 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l 311 (729)
.++++...+....|+|||||++|+|....+ ...+||++|++ ++... .+.. .. .....+.|+|||+ |
T Consensus 232 ~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~--~lt~-~~----~~~~~~~wSpDG~~l 298 (427)
T PRK02889 232 RRVVANFKGSNSAPAWSPDGRTLAVALSRD-----GNSQIYTVNAD-GSGLR--RLTQ-SS----GIDTEPFFSPDGRSI 298 (427)
T ss_pred EEEeecCCCCccceEECCCCCEEEEEEccC-----CCceEEEEECC-CCCcE--ECCC-CC----CCCcCeEEcCCCCEE
Confidence 888876556667899999999999976332 24679999987 56542 2322 22 3345789999999 9
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
+|.+++ .+..+||.++.++++.++++........+.|++ +++.|++.+...+..+||++++++++.+
T Consensus 299 ~f~s~~-~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~s~~~g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 299 YFTSDR-GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP------------DGKLLAYISRVGGAFKLYVQDLATGQVT 365 (427)
T ss_pred EEEecC-CCCcEEEEEECCCCceEEEecCCCCcCceEECC------------CCCEEEEEEccCCcEEEEEEECCCCCeE
Confidence 998876 677899999998888888874333334567776 8889998888778789999999999999
Q ss_pred eeccCCcce-EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 392 LLDIPFTDI-DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 392 ~lt~~~~~v-~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
+++...... ..++++++.++| .+.......+|.+++++...++|
T Consensus 366 ~lt~~~~~~~p~~spdg~~l~~-~~~~~g~~~l~~~~~~g~~~~~l 410 (427)
T PRK02889 366 ALTDTTRDESPSFAPNGRYILY-ATQQGGRSVLAAVSSDGRIKQRL 410 (427)
T ss_pred EccCCCCccCceECCCCCEEEE-EEecCCCEEEEEEECCCCceEEe
Confidence 988653322 222455555544 44455556799999876554433
No 20
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=8.3e-21 Score=206.58 Aligned_cols=252 Identities=12% Similarity=0.123 Sum_probs=186.4
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC--cEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~d~~~~~ 176 (729)
..++.|+..+......+.|+..+.++ +..+.++..+. ......|+++++.|+|....++ +||++|+.+
T Consensus 182 ~~riayv~~~~~~~~~~~l~i~d~dG-~~~~~l~~~~~-------~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t-- 251 (448)
T PRK04792 182 LTRIAYVVVNDKDKYPYQLMIADYDG-YNEQMLLRSPE-------PLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT-- 251 (448)
T ss_pred cCEEEEEEeeCCCCCceEEEEEeCCC-CCceEeecCCC-------cccCceECCCCCEEEEEEecCCCcEEEEEECCC--
Confidence 45677776544333456788877763 34566665431 1124568888889999876543 899999998
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++++... .....++|||||++|+|+....+ ..+||++|+++++.++|+........|.|||||++|+
T Consensus 252 g~~~~lt~~~----g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~ 321 (448)
T PRK04792 252 QVREKVTSFP----GINGAPRFSPDGKKLALVLSKDG------QPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLI 321 (448)
T ss_pred CCeEEecCCC----CCcCCeeECCCCCEEEEEEeCCC------CeEEEEEECCCCCeEECccCCCCccceEECCCCCEEE
Confidence 8888888652 22357899999999999865432 3689999999999999988766667899999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|.+ +..+ ..+||++|++ +|+... +.... .....+.|+|||+ |+|.... .+..+|+++|+++++.+
T Consensus 322 f~s-~~~g----~~~Iy~~dl~-~g~~~~--Lt~~g-----~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~ 387 (448)
T PRK04792 322 FTS-ERGG----KPQIYRVNLA-SGKVSR--LTFEG-----EQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGAMQ 387 (448)
T ss_pred EEE-CCCC----CceEEEEECC-CCCEEE--EecCC-----CCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCCeE
Confidence 987 3322 3579999998 676533 32222 2234689999999 8887776 67789999999999988
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCC
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 397 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~ 397 (729)
.|+... ....|.|++ +++.|++.+..+|...||+++.+++..+.++.+.
T Consensus 388 ~lt~~~-~d~~ps~sp------------dG~~I~~~~~~~g~~~l~~~~~~G~~~~~l~~~~ 436 (448)
T PRK04792 388 VLTSTR-LDESPSVAP------------NGTMVIYSTTYQGKQVLAAVSIDGRFKARLPAGQ 436 (448)
T ss_pred EccCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCCC
Confidence 887442 233567776 8899999999889899999999888888886543
No 21
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=5.5e-21 Score=209.00 Aligned_cols=243 Identities=14% Similarity=0.201 Sum_probs=179.4
Q ss_pred CEEEEEECCC------CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 155 DTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 155 ~~i~~~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.+|+|+.... .+|+++|.++ +..++++.. ......++|||||++|+|++.... ..+||++++
T Consensus 163 ~~ia~v~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~----~~~~~~p~wSpDG~~la~~s~~~~------~~~l~~~~l 230 (430)
T PRK00178 163 TRILYVTAERFSVNTRYTLQRSDYDG--ARAVTLLQS----REPILSPRWSPDGKRIAYVSFEQK------RPRIFVQNL 230 (430)
T ss_pred eeEEEEEeeCCCCCcceEEEEECCCC--CCceEEecC----CCceeeeeECCCCCEEEEEEcCCC------CCEEEEEEC
Confidence 3677865322 1699999997 778888766 344678899999999999976532 358999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
++|+.++++...+....|+|||||++|+|..... ...+||++|++ +++.. .+. ... .....+.|+||
T Consensus 231 ~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-----g~~~Iy~~d~~-~~~~~--~lt-~~~----~~~~~~~~spD 297 (430)
T PRK00178 231 DTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD-----GNPEIYVMDLA-SRQLS--RVT-NHP----AIDTEPFWGKD 297 (430)
T ss_pred CCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC-----CCceEEEEECC-CCCeE--Ecc-cCC----CCcCCeEECCC
Confidence 9999999886655556799999999999987332 23679999998 67653 232 222 33467899999
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+ ++|.++. .+..+||++++.+++.++++........+.|++ +++.+++....++..+||++|+++
T Consensus 298 g~~i~f~s~~-~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp------------dg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 298 GRTLYFTSDR-GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA------------DGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CCEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccceEECC------------CCCEEEEEEccCCceEEEEEECCC
Confidence 99 9999877 678899999999999888874333334566766 888999988777888899999999
Q ss_pred CceEeeccCCcceEE-eeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 388 HSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 388 g~~~~lt~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
++.+.|+........ ++++++ .+++.+.......||.++++++..++|
T Consensus 365 g~~~~lt~~~~~~~p~~spdg~-~i~~~~~~~g~~~l~~~~~~g~~~~~l 413 (430)
T PRK00178 365 GSVRILTDTSLDESPSVAPNGT-MLIYATRQQGRGVLMLVSINGRVRLPL 413 (430)
T ss_pred CCEEEccCCCCCCCceECCCCC-EEEEEEecCCceEEEEEECCCCceEEC
Confidence 999999875433322 344554 555555555556799999877665443
No 22
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.89 E-value=6.2e-21 Score=207.84 Aligned_cols=244 Identities=16% Similarity=0.173 Sum_probs=180.3
Q ss_pred CEEEEEECCC------CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 155 DTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 155 ~~i~~~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.+|+|+.... .+||++|.++ +..++|+.. ......++|||||++|+|++.... ..+||++++
T Consensus 168 ~~ia~v~~~~~~~~~~~~l~i~D~~g--~~~~~lt~~----~~~v~~p~wSpDg~~la~~s~~~~------~~~l~~~dl 235 (433)
T PRK04922 168 TRIAYVTVSGAGGAMRYALQVADSDG--YNPQTILRS----AEPILSPAWSPDGKKLAYVSFERG------RSAIYVQDL 235 (433)
T ss_pred ceEEEEEEeCCCCCceEEEEEECCCC--CCceEeecC----CCccccccCCCCCCEEEEEecCCC------CcEEEEEEC
Confidence 3677765421 2799999987 778899876 345678999999999999975432 357999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
++|+.++++...+....|.|||||++|+|+.... ...+||++|++ +++... +.. .. .....+.|+||
T Consensus 236 ~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-----g~~~Iy~~d~~-~g~~~~--lt~-~~----~~~~~~~~spD 302 (433)
T PRK04922 236 ATGQRELVASFRGINGAPSFSPDGRRLALTLSRD-----GNPEIYVMDLG-SRQLTR--LTN-HF----GIDTEPTWAPD 302 (433)
T ss_pred CCCCEEEeccCCCCccCceECCCCCEEEEEEeCC-----CCceEEEEECC-CCCeEE--Ccc-CC----CCccceEECCC
Confidence 9999888876555556799999999999987433 23679999998 676532 222 22 23357899999
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+ ++|.+++ .+..+||++++++++.++++........+.|++ +++.|++.+..++..+|+++++++
T Consensus 303 G~~l~f~sd~-~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~Sp------------DG~~Ia~~~~~~~~~~I~v~d~~~ 369 (433)
T PRK04922 303 GKSIYFTSDR-GGRPQIYRVAASGGSAERLTFQGNYNARASVSP------------DGKKIAMVHGSGGQYRIAVMDLST 369 (433)
T ss_pred CCEEEEEECC-CCCceEEEEECCCCCeEEeecCCCCccCEEECC------------CCCEEEEEECCCCceeEEEEECCC
Confidence 99 9999887 677899999999998888874333334567776 888898887767778999999999
Q ss_pred CceEeeccCCcceE-EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 388 HSLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 388 g~~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
++.+.|+.+..... .++++++.+++ .+.......||.++++++..++|+
T Consensus 370 g~~~~Lt~~~~~~~p~~spdG~~i~~-~s~~~g~~~L~~~~~~g~~~~~l~ 419 (433)
T PRK04922 370 GSVRTLTPGSLDESPSFAPNGSMVLY-ATREGGRGVLAAVSTDGRVRQRLV 419 (433)
T ss_pred CCeEECCCCCCCCCceECCCCCEEEE-EEecCCceEEEEEECCCCceEEcc
Confidence 99999987643322 22445554544 444455667999999877665543
No 23
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=2e-20 Score=203.95 Aligned_cols=253 Identities=14% Similarity=0.148 Sum_probs=187.9
Q ss_pred CCcEEEEeecC-CCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC--cEEEEeCCCC
Q 004816 99 HGRLIWLESRP-TEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSK 175 (729)
Q Consensus 99 g~~~~~~~~~~-~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~d~~~~ 175 (729)
+.+++|+..+. .+..++.||.++.+ ++..+.++..... .....|+++++.|+|.....+ +||++++.+
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~-g~~~~~lt~~~~~-------v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~- 237 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSD-GYNPQTILRSAEP-------ILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT- 237 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCC-CCCceEeecCCCc-------cccccCCCCCCEEEEEecCCCCcEEEEEECCC-
Confidence 56788886543 23446778888876 3356777654311 124567788889999876543 799999998
Q ss_pred CCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeE
Q 004816 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERM 255 (729)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~l 255 (729)
++.++++..+ .....++|||||++|+|+....+ ..+||++++++++.++++........|+|||||++|
T Consensus 238 -g~~~~l~~~~----g~~~~~~~SpDG~~l~~~~s~~g------~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 238 -GQRELVASFR----GINGAPSFSPDGRRLALTLSRDG------NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred -CCEEEeccCC----CCccCceECCCCCEEEEEEeCCC------CceEEEEECCCCCeEECccCCCCccceEECCCCCEE
Confidence 8888888652 22357899999999999875442 257999999999999998766556779999999999
Q ss_pred EEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE
Q 004816 256 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
+|.+ ++.+ ..+||+++++ +++... +.... .+...+.|||||+ |+|.... .+..+|+++|+++++.
T Consensus 307 ~f~s-d~~g----~~~iy~~dl~-~g~~~~--lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 307 YFTS-DRGG----RPQIYRVAAS-GGSAER--LTFQG-----NYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSV 372 (433)
T ss_pred EEEE-CCCC----CceEEEEECC-CCCeEE--eecCC-----CCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCe
Confidence 9997 4332 3579999998 666432 32222 2345789999999 8887765 5677999999999998
Q ss_pred EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 335 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 335 ~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
+.|+... ....+.|++ +++.+++.++..+...||.++++++..++|+.+..
T Consensus 373 ~~Lt~~~-~~~~p~~sp------------dG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~~~g 423 (433)
T PRK04922 373 RTLTPGS-LDESPSFAP------------NGSMVLYATREGGRGVLAAVSTDGRVRQRLVSADG 423 (433)
T ss_pred EECCCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEEcccCCC
Confidence 8887543 334577776 88999999998889999999999888888876433
No 24
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.88 E-value=2.2e-21 Score=205.22 Aligned_cols=245 Identities=18% Similarity=0.178 Sum_probs=178.4
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC----
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS---- 240 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~---- 240 (729)
+.+|++|+.+ ++.++|+.. ......+.|||||+.|+|+++ .+||+.++.+++.++||.+.
T Consensus 23 ~~y~i~d~~~--~~~~~l~~~----~~~~~~~~~sP~g~~~~~v~~----------~nly~~~~~~~~~~~lT~dg~~~i 86 (353)
T PF00930_consen 23 GDYYIYDIET--GEITPLTPP----PPKLQDAKWSPDGKYIAFVRD----------NNLYLRDLATGQETQLTTDGEPGI 86 (353)
T ss_dssp EEEEEEETTT--TEEEESS-E----ETTBSEEEE-SSSTEEEEEET----------TEEEEESSTTSEEEESES--TTTE
T ss_pred eeEEEEecCC--CceEECcCC----ccccccceeecCCCeeEEEec----------CceEEEECCCCCeEEeccccceeE
Confidence 4799999998 888888875 234578899999999999986 46999999999999998643
Q ss_pred --------------CeeeeeeeCCCCCeEEEEEecCCC----------------------------CCCCCcEEEEEEec
Q 004816 241 --------------DFYAFPRMDPRGERMAWIEWHHPN----------------------------MPWDKAELWVGYIS 278 (729)
Q Consensus 241 --------------~~~~~~~~SPDG~~la~~~~~~~~----------------------------~~~~~~~l~~~d~~ 278 (729)
+.....+|||||++|||.+.++.. .+....+|+++|++
T Consensus 87 ~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 87 YNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp EESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred EcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 233567899999999999976551 22234468899998
Q ss_pred CCCCeeeeEEe---cCCCCCccccccCceeCCCCc-EEEEEe-cCCCceEEEEEEcCCCeEEEeeccCccccCCcccccC
Q 004816 279 ENGDVYKRVCV---AGFDPTIVESPTEPKWSSKGE-LFFVTD-RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGI 353 (729)
Q Consensus 279 ~~g~~~~~~~~---~~~~~~~~~~~~~~~wspDG~-l~~~~~-~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~ 353 (729)
+++...+... ...+ .++..+.|++|++ +++... +.+....|.++|+.+++.+.+..+. ...|....
T Consensus 167 -~~~~~~~~~~~~~~~~~----~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~----~~~Wv~~~ 237 (353)
T PF00930_consen 167 -SGKTTELDPPNSLNPQD----YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEET----SDGWVDVY 237 (353)
T ss_dssp -STCCCEE---HHHHTSS----EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEE----SSSSSSSS
T ss_pred -CCcEEEeeeccccCCCc----cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEec----CCcceeee
Confidence 6765433333 2333 7888999999999 766554 4355667889999998887776433 56676555
Q ss_pred cceeee-eecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCce--EEEEEc
Q 004816 354 NSYEII-QSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSS--VAKVTL 428 (729)
Q Consensus 354 ~~~~~l-~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~--ly~~d~ 428 (729)
....|+ + ++..+++.++++|..|||+++.+++..++||.+.+.|..+ .+.++..+|+.++...|.+ ||++++
T Consensus 238 ~~~~~~~~---~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~ 314 (353)
T PF00930_consen 238 DPPHFLGP---DGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL 314 (353)
T ss_dssp SEEEE-TT---TSSEEEEEEETTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred cccccccC---CCCEEEEEEEcCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence 566665 4 7888999999999999999999999999999999999665 4455555555555555544 999999
Q ss_pred C-CCcceeee
Q 004816 429 D-DHKLKAVD 437 (729)
Q Consensus 429 ~-~~~~~~lt 437 (729)
+ ++++++||
T Consensus 315 ~~~~~~~~LT 324 (353)
T PF00930_consen 315 DSGGEPKCLT 324 (353)
T ss_dssp TETTEEEESS
T ss_pred CCCCCeEecc
Confidence 9 88887776
No 25
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=2.5e-20 Score=202.35 Aligned_cols=249 Identities=15% Similarity=0.185 Sum_probs=183.6
Q ss_pred CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCCC
Q 004816 100 GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKDS 177 (729)
Q Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~~ 177 (729)
++++|+.. ..++..||..+.++ ...+.++..... .....|+++++.|+|....+ .+||++|+.+ +
T Consensus 164 ~~iayv~~---~~~~~~L~~~D~dG-~~~~~l~~~~~~-------v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~--g 230 (427)
T PRK02889 164 TRIAYVIK---TGNRYQLQISDADG-QNAQSALSSPEP-------IISPAWSPDGTKLAYVSFESKKPVVYVHDLAT--G 230 (427)
T ss_pred cEEEEEEc---cCCccEEEEECCCC-CCceEeccCCCC-------cccceEcCCCCEEEEEEccCCCcEEEEEECCC--C
Confidence 56777753 24567788888762 345666543311 12356788888999987654 3799999998 8
Q ss_pred CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEE
Q 004816 178 SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAW 257 (729)
Q Consensus 178 ~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~ 257 (729)
+.++++..+ .....++|||||++|+|+....+ ..+||++++++++.++|+........|.|||||++|+|
T Consensus 231 ~~~~l~~~~----g~~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f 300 (427)
T PRK02889 231 RRRVVANFK----GSNSAPAWSPDGRTLAVALSRDG------NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYF 300 (427)
T ss_pred CEEEeecCC----CCccceEECCCCCEEEEEEccCC------CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEE
Confidence 888887552 23357899999999999865442 36899999999989999876666678999999999999
Q ss_pred EEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 258 IEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 258 ~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
++ ++.+ ..+||+++++ +++... +.... .+...+.|||||+ |+|.+.. .+..+|+++|+++++.+.
T Consensus 301 ~s-~~~g----~~~Iy~~~~~-~g~~~~--lt~~g-----~~~~~~~~SpDG~~Ia~~s~~-~g~~~I~v~d~~~g~~~~ 366 (427)
T PRK02889 301 TS-DRGG----APQIYRMPAS-GGAAQR--VTFTG-----SYNTSPRISPDGKLLAYISRV-GGAFKLYVQDLATGQVTA 366 (427)
T ss_pred Ee-cCCC----CcEEEEEECC-CCceEE--EecCC-----CCcCceEECCCCCEEEEEEcc-CCcEEEEEEECCCCCeEE
Confidence 87 4333 3579999987 565422 22221 2335689999999 8888776 667799999999999888
Q ss_pred eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 337 IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 337 l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
++... ....|.|++ +++.|++.++..|...||.++.+++..+.++.+..
T Consensus 367 lt~~~-~~~~p~~sp------------dg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g 415 (427)
T PRK02889 367 LTDTT-RDESPSFAP------------NGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGG 415 (427)
T ss_pred ccCCC-CccCceECC------------CCCEEEEEEecCCCEEEEEEECCCCceEEeecCCC
Confidence 87442 335678876 88999999999999999999998777777765433
No 26
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.88 E-value=3.3e-20 Score=202.83 Aligned_cols=251 Identities=13% Similarity=0.164 Sum_probs=186.5
Q ss_pred CCcEEEEeec-CCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCC
Q 004816 99 HGRLIWLESR-PTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSK 175 (729)
Q Consensus 99 g~~~~~~~~~-~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~ 175 (729)
..++.|+... ..+.+++.|+..+.++ +..+.++..... .....|+++++.|+|....+ .+||++++++
T Consensus 162 ~~~ia~v~~~~~~~~~~~~l~~~d~~g-~~~~~l~~~~~~-------~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~- 232 (430)
T PRK00178 162 STRILYVTAERFSVNTRYTLQRSDYDG-ARAVTLLQSREP-------ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT- 232 (430)
T ss_pred eeeEEEEEeeCCCCCcceEEEEECCCC-CCceEEecCCCc-------eeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-
Confidence 4667777543 3345678898888773 355666543311 12345777788999987654 3899999998
Q ss_pred CCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeE
Q 004816 176 DSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERM 255 (729)
Q Consensus 176 ~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~l 255 (729)
++.++|+... .....+.|||||++|+|+....+ ..+||++|+++++.++|+........|.|||||++|
T Consensus 233 -g~~~~l~~~~----g~~~~~~~SpDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 233 -GRREQITNFE----GLNGAPAWSPDGSKLAFVLSKDG------NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred -CCEEEccCCC----CCcCCeEECCCCCEEEEEEccCC------CceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEE
Confidence 8888888652 22356899999999999875432 257999999999999998776667789999999999
Q ss_pred EEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE
Q 004816 256 AWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 256 a~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
+|.+ ++.+ ..+||+++++ +|+... +.... .+...+.|||||+ ++|.... .+..+|+++|+++++.
T Consensus 302 ~f~s-~~~g----~~~iy~~d~~-~g~~~~--lt~~~-----~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 302 YFTS-DRGG----KPQIYKVNVN-GGRAER--VTFVG-----NYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQRGSV 367 (430)
T ss_pred EEEE-CCCC----CceEEEEECC-CCCEEE--eecCC-----CCccceEECCCCCEEEEEEcc-CCceEEEEEECCCCCE
Confidence 9987 3332 3579999998 676533 22221 2335689999999 8888766 5677899999999998
Q ss_pred EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 335 LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 335 ~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
+.|+... ....|.|++ +++.+++++.+.|...||.++.+++..+.|+.+
T Consensus 368 ~~lt~~~-~~~~p~~sp------------dg~~i~~~~~~~g~~~l~~~~~~g~~~~~l~~~ 416 (430)
T PRK00178 368 RILTDTS-LDESPSVAP------------NGTMLIYATRQQGRGVLMLVSINGRVRLPLPTA 416 (430)
T ss_pred EEccCCC-CCCCceECC------------CCCEEEEEEecCCceEEEEEECCCCceEECcCC
Confidence 8887532 333677776 889999999999999999999988777777654
No 27
>PRK10566 esterase; Provisional
Probab=99.87 E-value=7.3e-21 Score=192.31 Aligned_cols=226 Identities=19% Similarity=0.257 Sum_probs=149.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC-chhHHHhhccCCC--
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GREFRERLLGRWG-- 548 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~-g~~~~~~~~~~~~-- 548 (729)
+..+.+.|.+. ..++.|+||++||.++.. ..+...++.|+++||.|+++|+||.+.. +..........|.
T Consensus 12 ~~~~~~~p~~~-----~~~~~p~vv~~HG~~~~~--~~~~~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK10566 12 IEVLHAFPAGQ-----RDTPLPTVFFYHGFTSSK--LVYSYFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQIL 84 (249)
T ss_pred cceEEEcCCCC-----CCCCCCEEEEeCCCCccc--chHHHHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHHHH
Confidence 34455667541 134679999999985443 4567788999999999999999986532 1100000000011
Q ss_pred cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc-ch----hhhhhh
Q 004816 549 IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HK----FESRYI 622 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-~~----~~~~~~ 622 (729)
....+|+.++++++.+++.+|.+||+++|||+||++++.++. +|+ +++++...+......+.... .. ....+
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 162 (249)
T PRK10566 85 LQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPW-VKCVASLMGSGYFTSLARTLFPPLIPETAAQQ- 162 (249)
T ss_pred HHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCC-eeEEEEeeCcHHHHHHHHHhcccccccccccH-
Confidence 123678888999999888889999999999999999999988 554 55554443322221111100 00 00000
Q ss_pred hhhcCChhhhhhcCcccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCC--CEEEEEECCCCcccCCcccHHHH
Q 004816 623 DNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGL--PVALVEYEGEQHGFRKAENIKFT 699 (729)
Q Consensus 623 ~~~~~~~~~~~~~sp~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~--~~~~~~~~~~gH~~~~~~~~~~~ 699 (729)
.........+...++...+.++ ++|+|++||++|.++|++++++++++++.+|. +++++++++++|.+. ...
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~i~~~P~Lii~G~~D~~v~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~H~~~-----~~~ 237 (249)
T PRK10566 163 AEFNNIVAPLAEWEVTHQLEQLADRPLLLWHGLADDVVPAAESLRLQQALRERGLDKNLTCLWEPGVRHRIT-----PEA 237 (249)
T ss_pred HHHHHHHHHHhhcChhhhhhhcCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCcceEEEecCCCCCccC-----HHH
Confidence 0000001122334455556666 68999999999999999999999999999886 478999999999874 356
Q ss_pred HHHHHHHHHHHh
Q 004816 700 LEQQMVFFARVV 711 (729)
Q Consensus 700 ~~~~~~fl~~~l 711 (729)
++.+++||+++|
T Consensus 238 ~~~~~~fl~~~~ 249 (249)
T PRK10566 238 LDAGVAFFRQHL 249 (249)
T ss_pred HHHHHHHHHhhC
Confidence 789999999875
No 28
>PLN02442 S-formylglutathione hydrolase
Probab=99.85 E-value=3.5e-20 Score=189.43 Aligned_cols=241 Identities=20% Similarity=0.220 Sum_probs=158.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhhCCcEEEEecCCCCC--
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGGST-- 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~~G~~v~~~d~rGs~-- 533 (729)
......+.+..-|..+.+.+|.|+.. +++++|+|+++||.++....+.. ....+.+...||+|+.+|..+.+
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~~-----~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~~~g~~ 91 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPAS-----DSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAARGIALVAPDTSPRGLN 91 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCcc-----cCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhcCeEEEecCCCCCCCC
Confidence 34566666654778899999999741 25678999999997654432222 22345667789999999975432
Q ss_pred ----------CCchh-HHHhhccCCCc-----ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcce
Q 004816 534 ----------GYGRE-FRERLLGRWGI-----VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFK 596 (729)
Q Consensus 534 ----------g~g~~-~~~~~~~~~~~-----~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~ 596 (729)
+++.. +.......|+. ...+++...++.... .+|.++++|+|+||||++|+.++. +|++|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~--~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~ 169 (283)
T PLN02442 92 VEGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFD--QLDTSRASIFGHSMGGHGALTIYLKNPDKYK 169 (283)
T ss_pred CCCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHH--hcCCCceEEEEEChhHHHHHHHHHhCchhEE
Confidence 11111 11111111211 113333333333322 368899999999999999999988 999999
Q ss_pred EEEEeccccChhHHhhhcchhhhhhhhhhcC-Chhhhhh---cCcccccCCCCCCEEEEEeCCCCCCChH-HHHHHHHHH
Q 004816 597 AGASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYE---KSPINFVDKFSCPIILFQGLEDKVVPPD-QARKIYKAL 671 (729)
Q Consensus 597 a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~sp~~~~~~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l 671 (729)
++++.+|+.++..... ........++ ..+.+.+ .+++.++...++|+|++||++|.+++.. ++..+++++
T Consensus 170 ~~~~~~~~~~~~~~~~-----~~~~~~~~~g~~~~~~~~~d~~~~~~~~~~~~~pvli~~G~~D~~v~~~~~s~~~~~~l 244 (283)
T PLN02442 170 SVSAFAPIANPINCPW-----GQKAFTNYLGSDKADWEEYDATELVSKFNDVSATILIDQGEADKFLKEQLLPENFEEAC 244 (283)
T ss_pred EEEEECCccCcccCch-----hhHHHHHHcCCChhhHHHcChhhhhhhccccCCCEEEEECCCCccccccccHHHHHHHH
Confidence 9999999987542110 0111111222 2233333 4445556667899999999999999874 688999999
Q ss_pred HhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 672 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++|.+++++++|+++|.+. .+..+++..+.|..++++
T Consensus 245 ~~~g~~~~~~~~pg~~H~~~---~~~~~i~~~~~~~~~~~~ 282 (283)
T PLN02442 245 KEAGAPVTLRLQPGYDHSYF---FIATFIDDHINHHAQALK 282 (283)
T ss_pred HHcCCCeEEEEeCCCCccHH---HHHHHHHHHHHHHHHHhc
Confidence 99999999999999999864 445555666666666654
No 29
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.85 E-value=8.6e-20 Score=195.65 Aligned_cols=231 Identities=16% Similarity=0.108 Sum_probs=157.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.++++.. +|..+.++++.|.. .++.|+||+.||. .+.....+...++.|+++||+|+++|+||.|...
T Consensus 167 ~~e~v~i~~~-~g~~l~g~l~~P~~-------~~~~P~Vli~gG~-~~~~~~~~~~~~~~La~~Gy~vl~~D~pG~G~s~ 237 (414)
T PRK05077 167 ELKELEFPIP-GGGPITGFLHLPKG-------DGPFPTVLVCGGL-DSLQTDYYRLFRDYLAPRGIAMLTIDMPSVGFSS 237 (414)
T ss_pred ceEEEEEEcC-CCcEEEEEEEECCC-------CCCccEEEEeCCc-ccchhhhHHHHHHHHHhCCCEEEEECCCCCCCCC
Confidence 3678899887 77799999999864 3567888766554 3333344566788999999999999999865432
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-H---Hh
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-M---LR 611 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-~---~~ 611 (729)
.. ... ........+++++|...+.+|.+||+++|+|+||+++++++. +|++++++|+.+|+.+.. . ..
T Consensus 238 ~~---~~~----~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~~~~~~~~~~ 310 (414)
T PRK05077 238 KW---KLT----QDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVHTLLTDPKRQ 310 (414)
T ss_pred CC---Ccc----ccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccchhhcchhhh
Confidence 21 000 011222357889999988899999999999999999999997 888999999999876421 1 00
Q ss_pred hhcchhhhhhhhhhcC----Chhhh----hhcCcc--c-ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 612 AETHKFESRYIDNLVG----SEKDY----YEKSPI--N-FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~----~~~~~----~~~sp~--~-~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
..........+...++ +.+.+ ...+.. . ...++++|+|+++|++|.++|+++++.+.+... +.++
T Consensus 311 ~~~p~~~~~~la~~lg~~~~~~~~l~~~l~~~sl~~~~~l~~~i~~PvLiI~G~~D~ivP~~~a~~l~~~~~----~~~l 386 (414)
T PRK05077 311 QQVPEMYLDVLASRLGMHDASDEALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLIASSSA----DGKL 386 (414)
T ss_pred hhchHHHHHHHHHHhCCCCCChHHHHHHhhhccchhhhhhccCCCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCeE
Confidence 0000000011111111 11111 111111 1 125789999999999999999999997765543 4588
Q ss_pred EEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 681 VEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 681 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+++|+. |.+ +...+++..+.+||.++|
T Consensus 387 ~~i~~~-~~~---e~~~~~~~~i~~wL~~~l 413 (414)
T PRK05077 387 LEIPFK-PVY---RNFDKALQEISDWLEDRL 413 (414)
T ss_pred EEccCC-Ccc---CCHHHHHHHHHHHHHHHh
Confidence 999986 433 356789999999999886
No 30
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.85 E-value=5.9e-20 Score=193.71 Aligned_cols=243 Identities=18% Similarity=0.229 Sum_probs=163.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
+.+...+... ||.++++..+.|.+ .....|+||++||.... ..+.+...+..|+++||.|+++|+||.|.+.
T Consensus 31 ~~~~~~~~~~-dg~~l~~~~~~~~~------~~~~~~~VvllHG~~~~-~~~~~~~~~~~L~~~Gy~V~~~D~rGhG~S~ 102 (330)
T PLN02298 31 KGSKSFFTSP-RGLSLFTRSWLPSS------SSPPRALIFMVHGYGND-ISWTFQSTAIFLAQMGFACFALDLEGHGRSE 102 (330)
T ss_pred ccccceEEcC-CCCEEEEEEEecCC------CCCCceEEEEEcCCCCC-cceehhHHHHHHHhCCCEEEEecCCCCCCCC
Confidence 4455667776 99999998888754 12346899999998433 2344556677889999999999999876543
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh----
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR---- 611 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~---- 611 (729)
.. ......-....+|+.++++++......+..+++|+||||||.+++.++. +|++++++|+.+|........
T Consensus 103 ~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~ 179 (330)
T PLN02298 103 GL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKISDKIRPPW 179 (330)
T ss_pred Cc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccCCcccCCch
Confidence 21 0000001123788999999998764445568999999999999998887 899999999999865422100
Q ss_pred --hhcchhhhhhhhh--------hcC----C--hhhhhhcCc----------------------ccccCCCCCCEEEEEe
Q 004816 612 --AETHKFESRYIDN--------LVG----S--EKDYYEKSP----------------------INFVDKFSCPIILFQG 653 (729)
Q Consensus 612 --~~~~~~~~~~~~~--------~~~----~--~~~~~~~sp----------------------~~~~~~i~~PvL~i~G 653 (729)
.....+...+... ... . ...+...+| ...+.++++|+|++||
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLii~G 259 (330)
T PLN02298 180 PIPQILTFVARFLPTLAIVPTADLLEKSVKVPAKKIIAKRNPMRYNGKPRLGTVVELLRVTDYLGKKLKDVSIPFIVLHG 259 (330)
T ss_pred HHHHHHHHHHHHCCCCccccCCCcccccccCHHHHHHHHhCccccCCCccHHHHHHHHHHHHHHHHhhhhcCCCEEEEec
Confidence 0000000000000 000 0 000001111 1235678899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC--cc-cHHHHHHHHHHHHHHHhC
Q 004816 654 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AE-NIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 654 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~-~~~~~~~~~~~fl~~~l~ 712 (729)
++|.++|++.++++++.+... ..+++++++++|.+.. ++ ......+.+.+|+.++++
T Consensus 260 ~~D~ivp~~~~~~l~~~i~~~--~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~~~~ 319 (330)
T PLN02298 260 SADVVTDPDVSRALYEEAKSE--DKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNERCT 319 (330)
T ss_pred CCCCCCCHHHHHHHHHHhccC--CceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999988643 3589999999998643 32 345678889999999986
No 31
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.85 E-value=1e-19 Score=185.82 Aligned_cols=242 Identities=17% Similarity=0.190 Sum_probs=162.0
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHH-hhCCcEEEEecC--CCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNY--GGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l-a~~G~~v~~~d~--rGs~ 533 (729)
+.+..++.+...+..+.+.+|.|++.. .++.|+|+++||.+.....+.+....+.+ ++.||.|++||+ ||.+
T Consensus 12 ~~~~~~~~s~~~~~~~~~~v~~P~~~~-----~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~~~g~~ 86 (275)
T TIGR02821 12 TQGFYRHKSETCGVPMTFGVFLPPQAA-----AGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEHGLALVAPDTSPRGTG 86 (275)
T ss_pred EEEEEEEeccccCCceEEEEEcCCCcc-----CCCCCEEEEccCCCCCccHHHhhhHHHHHHhhcCcEEEEeCCCCCcCC
Confidence 345566666546778889999997621 34679999999986544433333333444 456999999997 5544
Q ss_pred CCch--hHH---------HhhccCCC--cccHHHHHHHHHHHHh-CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEE
Q 004816 534 GYGR--EFR---------ERLLGRWG--IVDVNDCCSCATFLVG-SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAG 598 (729)
Q Consensus 534 g~g~--~~~---------~~~~~~~~--~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~ 598 (729)
..+. .|. +.....+. ......+...+..+++ ...+|.++++|+|+||||++++.++. +|+.|+++
T Consensus 87 ~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~ 166 (275)
T TIGR02821 87 IAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSV 166 (275)
T ss_pred CCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEE
Confidence 2221 111 00000111 0112233333333333 34578899999999999999999998 99999999
Q ss_pred EEeccccChhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCC--CCCCEEEEEeCCCCCCCh-HHHHHHHHHHHhC
Q 004816 599 ASLYGVADLSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDK--FSCPIILFQGLEDKVVPP-DQARKIYKALKEN 674 (729)
Q Consensus 599 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~--i~~PvL~i~G~~D~~vp~-~~~~~~~~~l~~~ 674 (729)
++.+|+.+.... .....++...++ +.+.+...+|...+.+ ..+|+|+.||++|..+|. .++..+.++|+++
T Consensus 167 ~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~plli~~G~~D~~v~~~~~~~~~~~~l~~~ 241 (275)
T TIGR02821 167 SAFAPIVAPSRC-----PWGQKAFSAYLGADEAAWRSYDASLLVADGGRHSTILIDQGTADQFLDEQLRPDAFEQACRAA 241 (275)
T ss_pred EEECCccCcccC-----cchHHHHHHHhcccccchhhcchHHHHhhcccCCCeeEeecCCCcccCccccHHHHHHHHHHc
Confidence 999999775321 111112222222 2334445566554443 457999999999999999 6889999999999
Q ss_pred CCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 675 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
|++++++++||++|+|. .+...++..++|+.+++
T Consensus 242 g~~v~~~~~~g~~H~f~---~~~~~~~~~~~~~~~~~ 275 (275)
T TIGR02821 242 GQALTLRRQAGYDHSYY---FIASFIADHLRHHAERL 275 (275)
T ss_pred CCCeEEEEeCCCCccch---hHHHhHHHHHHHHHhhC
Confidence 99999999999999984 45677888888887753
No 32
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.85 E-value=1.4e-20 Score=185.72 Aligned_cols=204 Identities=20% Similarity=0.287 Sum_probs=143.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCC-CchhH--HHhhccC--
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG-YGREF--RERLLGR-- 546 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g-~g~~~--~~~~~~~-- 546 (729)
+.+++..|.+ .++.|.||++|+..+.. ......++.|+++||.|++||+-+..+ ..... .......
T Consensus 1 ~~ay~~~P~~-------~~~~~~Vvv~~d~~G~~--~~~~~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~ 71 (218)
T PF01738_consen 1 IDAYVARPEG-------GGPRPAVVVIHDIFGLN--PNIRDLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELF 71 (218)
T ss_dssp EEEEEEEETT-------SSSEEEEEEE-BTTBS---HHHHHHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCH
T ss_pred CeEEEEeCCC-------CCCCCEEEEEcCCCCCc--hHHHHHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHH
Confidence 4678888876 35779999999974332 445568899999999999999765333 11111 1111111
Q ss_pred --CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhh
Q 004816 547 --WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDN 624 (729)
Q Consensus 547 --~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~ 624 (729)
.......|+.+++++|.+++.++.+||+++|+|+||.+++.++...+.++++|+.+|.....
T Consensus 72 ~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~yg~~~~~---------------- 135 (218)
T PF01738_consen 72 APRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSFYGGSPPP---------------- 135 (218)
T ss_dssp HHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEES-SSSGG----------------
T ss_pred hhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhccccceEEEEcCCCCCC----------------
Confidence 11123688889999999998788999999999999999999998557899999999911100
Q ss_pred hcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc-------ccHH
Q 004816 625 LVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-------ENIK 697 (729)
Q Consensus 625 ~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-------~~~~ 697 (729)
.+.....++++|+|+++|++|+.++.+...++.+.|+++|+++++++|||++|+|..+ +...
T Consensus 136 -----------~~~~~~~~~~~P~l~~~g~~D~~~~~~~~~~~~~~l~~~~~~~~~~~y~ga~HgF~~~~~~~~~~~aa~ 204 (218)
T PF01738_consen 136 -----------PPLEDAPKIKAPVLILFGENDPFFPPEEVEALEEALKAAGVDVEVHVYPGAGHGFANPSRPPYDPAAAE 204 (218)
T ss_dssp -----------GHHHHGGG--S-EEEEEETT-TTS-HHHHHHHHHHHHCTTTTEEEEEETT--TTTTSTTSTT--HHHHH
T ss_pred -----------cchhhhcccCCCEeecCccCCCCCChHHHHHHHHHHHhcCCcEEEEECCCCcccccCCCCcccCHHHHH
Confidence 1112345678999999999999999999999999999999999999999999999643 3456
Q ss_pred HHHHHHHHHHHHHh
Q 004816 698 FTLEQQMVFFARVV 711 (729)
Q Consensus 698 ~~~~~~~~fl~~~l 711 (729)
+.++++++||+++|
T Consensus 205 ~a~~~~~~ff~~~L 218 (218)
T PF01738_consen 205 DAWQRTLAFFKRHL 218 (218)
T ss_dssp HHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC
Confidence 88899999999876
No 33
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.83 E-value=1.5e-18 Score=188.74 Aligned_cols=238 Identities=14% Similarity=0.139 Sum_probs=169.6
Q ss_pred CCEEEEEECC-----CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 154 GDTVIFSNYK-----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 154 ~~~i~~~~~~-----~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
+++|+|+... +.+||++|.++ ...++|+.. ......++|||||++|+|++.... ..+||++|+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg--~~~~~lt~~----~~~v~~p~wSPDG~~la~~s~~~~------~~~i~i~dl 235 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG--FNQFIVNRS----SQPLMSPAWSPDGSKLAYVSFENK------KSQLVVHDL 235 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC--CCceEeccC----CCccccceEcCCCCEEEEEEecCC------CcEEEEEeC
Confidence 4578787643 24899999987 677888876 345688999999999999876432 357999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
.+++.++++...+....++|||||++|+|..... ...+||++|++ +++. ..+. ... .....+.|+||
T Consensus 236 ~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-----g~~~Iy~~d~~-~~~~--~~lt-~~~----~~~~~~~wSpD 302 (429)
T PRK01742 236 RSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD-----GVLNIYVMGAN-GGTP--SQLT-SGA----GNNTEPSWSPD 302 (429)
T ss_pred CCCceEEEecCCCccCceeECCCCCEEEEEEecC-----CcEEEEEEECC-CCCe--Eeec-cCC----CCcCCEEECCC
Confidence 9998888876555556799999999999987332 23579999987 6664 2333 232 34568999999
Q ss_pred Cc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
|+ |+|.+++ .+..+||.++..++..+.+. ... ..+.|++ +++.|++.+. ..++.+|+.+
T Consensus 303 G~~i~f~s~~-~g~~~I~~~~~~~~~~~~l~-~~~--~~~~~Sp------------DG~~ia~~~~----~~i~~~Dl~~ 362 (429)
T PRK01742 303 GQSILFTSDR-SGSPQVYRMSASGGGASLVG-GRG--YSAQISA------------DGKTLVMING----DNVVKQDLTS 362 (429)
T ss_pred CCEEEEEECC-CCCceEEEEECCCCCeEEec-CCC--CCccCCC------------CCCEEEEEcC----CCEEEEECCC
Confidence 99 8998877 78889999998887776663 221 2456765 7888877654 3578889999
Q ss_pred CceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 388 HSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 388 g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
++.+.++.... ...+ ..++++.+++++.......++.++.++...++|+
T Consensus 363 g~~~~lt~~~~-~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~ 412 (429)
T PRK01742 363 GSTEVLSSTFL-DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP 412 (429)
T ss_pred CCeEEecCCCC-CCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc
Confidence 98888875432 2222 3444555555555555556778787776665553
No 34
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.83 E-value=1.2e-19 Score=186.20 Aligned_cols=237 Identities=27% Similarity=0.419 Sum_probs=157.3
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
....++|.+. +|.+|.++++.|++ ..++.|+||.+||.+... ..+. ....++.+||+|+.+|.||.++..
T Consensus 55 ~vy~v~f~s~-~g~~V~g~l~~P~~------~~~~~Pavv~~hGyg~~~--~~~~-~~~~~a~~G~~vl~~d~rGqg~~~ 124 (320)
T PF05448_consen 55 EVYDVSFESF-DGSRVYGWLYRPKN------AKGKLPAVVQFHGYGGRS--GDPF-DLLPWAAAGYAVLAMDVRGQGGRS 124 (320)
T ss_dssp EEEEEEEEEG-GGEEEEEEEEEES-------SSSSEEEEEEE--TT--G--GGHH-HHHHHHHTT-EEEEE--TTTSSSS
T ss_pred EEEEEEEEcc-CCCEEEEEEEecCC------CCCCcCEEEEecCCCCCC--CCcc-cccccccCCeEEEEecCCCCCCCC
Confidence 4567889987 99999999999985 257889999999974432 1121 123578999999999999988544
Q ss_pred hhHHHhh----cc--CCCc----------ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEE
Q 004816 537 REFRERL----LG--RWGI----------VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGAS 600 (729)
Q Consensus 537 ~~~~~~~----~~--~~~~----------~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~ 600 (729)
....... .+ ..|. ..+.|+..++++|.+.+.+|.+||++.|.|.||.+++.+++..++|+++++
T Consensus 125 ~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~ 204 (320)
T PF05448_consen 125 PDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAA 204 (320)
T ss_dssp -B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEE
T ss_pred CCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEe
Confidence 3322110 00 0111 126899999999999999999999999999999999999995568999999
Q ss_pred eccc-cChhHHhhhcc---hh--hhhhhh---hhcCC----hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHH
Q 004816 601 LYGV-ADLSMLRAETH---KF--ESRYID---NLVGS----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKI 667 (729)
Q Consensus 601 ~~~~-~d~~~~~~~~~---~~--~~~~~~---~~~~~----~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~ 667 (729)
..|. .|+........ .+ ...|+. ..... .+.+...+..+.+++|++|+|+..|..|.+||+....+.
T Consensus 205 ~vP~l~d~~~~~~~~~~~~~y~~~~~~~~~~d~~~~~~~~v~~~L~Y~D~~nfA~ri~~pvl~~~gl~D~~cPP~t~fA~ 284 (320)
T PF05448_consen 205 DVPFLCDFRRALELRADEGPYPEIRRYFRWRDPHHEREPEVFETLSYFDAVNFARRIKCPVLFSVGLQDPVCPPSTQFAA 284 (320)
T ss_dssp ESESSSSHHHHHHHT--STTTHHHHHHHHHHSCTHCHHHHHHHHHHTT-HHHHGGG--SEEEEEEETT-SSS-HHHHHHH
T ss_pred cCCCccchhhhhhcCCccccHHHHHHHHhccCCCcccHHHHHHHHhhhhHHHHHHHcCCCEEEEEecCCCCCCchhHHHH
Confidence 9984 56654432211 11 112222 11111 133456788888999999999999999999999999999
Q ss_pred HHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 668 YKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 668 ~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
++.+.. +.++++||..+|.... ....++.++||.+|
T Consensus 285 yN~i~~---~K~l~vyp~~~He~~~----~~~~~~~~~~l~~~ 320 (320)
T PF05448_consen 285 YNAIPG---PKELVVYPEYGHEYGP----EFQEDKQLNFLKEH 320 (320)
T ss_dssp HCC--S---SEEEEEETT--SSTTH----HHHHHHHHHHHHH-
T ss_pred HhccCC---CeeEEeccCcCCCchh----hHHHHHHHHHHhcC
Confidence 999975 5799999999996432 22267788999875
No 35
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.82 E-value=5.3e-18 Score=185.27 Aligned_cols=244 Identities=17% Similarity=0.193 Sum_probs=175.9
Q ss_pred CCEEEEEECC----CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 154 GDTVIFSNYK----DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 154 ~~~i~~~~~~----~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
+++++|.... ..+||++|.++ +..++|+.. ......++|||||++|+|+..... ..+||+++++
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~d~~g--~~~~~l~~~----~~~~~~p~~Spdg~~la~~~~~~~------~~~i~v~d~~ 222 (417)
T TIGR02800 155 STRIAYVSKSGKSRRYELQVADYDG--ANPQTITRS----REPILSPAWSPDGQKLAYVSFESG------KPEIYVQDLA 222 (417)
T ss_pred CCEEEEEEEeCCCCcceEEEEcCCC--CCCEEeecC----CCceecccCCCCCCEEEEEEcCCC------CcEEEEEECC
Confidence 4567777644 23799999987 778888875 234578899999999999875432 2579999999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+++.+.++...+....++|||||++|+|..... ...+||++++. ++.... +.. .. .....+.|+|||
T Consensus 223 ~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~-----~~~~i~~~d~~-~~~~~~--l~~-~~----~~~~~~~~s~dg 289 (417)
T TIGR02800 223 TGQREKVASFPGMNGAPAFSPDGSKLAVSLSKD-----GNPDIYVMDLD-GKQLTR--LTN-GP----GIDTEPSWSPDG 289 (417)
T ss_pred CCCEEEeecCCCCccceEECCCCCEEEEEECCC-----CCccEEEEECC-CCCEEE--CCC-CC----CCCCCEEECCCC
Confidence 998888876555556799999999999886322 24579999998 665422 222 22 223568999999
Q ss_pred c-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCC
Q 004816 310 E-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGH 388 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g 388 (729)
+ |+|.+++ .+..+||++|+++++.+.++........+.|++ +++.++++....+..+|+.++++++
T Consensus 290 ~~l~~~s~~-~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp------------dg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 290 KSIAFTSDR-GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP------------DGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CEEEEEECC-CCCceEEEEECCCCCEEEeecCCCCccCeEECC------------CCCEEEEEEccCCceEEEEEeCCCC
Confidence 9 8888877 677799999999998888875444445566765 7888888887777889999999998
Q ss_pred ceEeeccCCcceE-EeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 389 SLSLLDIPFTDID-NITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 389 ~~~~lt~~~~~v~-~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
..+.++....... .++++++.+++... ......+|.++.+++..++|
T Consensus 357 ~~~~l~~~~~~~~p~~spdg~~l~~~~~-~~~~~~l~~~~~~g~~~~~~ 404 (417)
T TIGR02800 357 GERVLTDTGLDESPSFAPNGRMILYATT-RGGRGVLGLVSTDGRFRARL 404 (417)
T ss_pred CeEEccCCCCCCCceECCCCCEEEEEEe-CCCcEEEEEEECCCceeeEC
Confidence 8888876433222 23555555555554 44456788888766654433
No 36
>PRK10749 lysophospholipase L2; Provisional
Probab=99.82 E-value=7.4e-19 Score=184.76 Aligned_cols=241 Identities=15% Similarity=0.110 Sum_probs=158.2
Q ss_pred CCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC
Q 004816 456 SLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY 535 (729)
Q Consensus 456 ~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~ 535 (729)
...++..+... +|.++++..+.|.. ..|+||++||.. .....|...+..++++||.|+++|+||.|.+
T Consensus 28 ~~~~~~~~~~~-~g~~l~~~~~~~~~---------~~~~vll~HG~~--~~~~~y~~~~~~l~~~g~~v~~~D~~G~G~S 95 (330)
T PRK10749 28 RQREEAEFTGV-DDIPIRFVRFRAPH---------HDRVVVICPGRI--ESYVKYAELAYDLFHLGYDVLIIDHRGQGRS 95 (330)
T ss_pred hhccceEEEcC-CCCEEEEEEccCCC---------CCcEEEEECCcc--chHHHHHHHHHHHHHCCCeEEEEcCCCCCCC
Confidence 34456666666 89999988887632 236899999973 3233466677788899999999999988765
Q ss_pred chhHHHhhccCCC--cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh----
Q 004816 536 GREFRERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---- 608 (729)
Q Consensus 536 g~~~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---- 608 (729)
+........+... ..-++|+.++++.+... .+..++.++||||||.+++.++. +|++++++|+.+|.....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~~~~~~~ 173 (330)
T PRK10749 96 GRLLDDPHRGHVERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFGIVLPLP 173 (330)
T ss_pred CCCCCCCCcCccccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhccCCCCC
Confidence 4322110011100 11256677777766544 24578999999999999998887 999999999998864311
Q ss_pred H-H-------hhhcc-----------hh-------------hhh---hhhhhcCCh-------------hhhhh-cCccc
Q 004816 609 M-L-------RAETH-----------KF-------------ESR---YIDNLVGSE-------------KDYYE-KSPIN 639 (729)
Q Consensus 609 ~-~-------~~~~~-----------~~-------------~~~---~~~~~~~~~-------------~~~~~-~sp~~ 639 (729)
. . ..... .+ ... +......++ +.+.. .....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (330)
T PRK10749 174 SWMARRILNWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELRVGGPTYHWVRESILAGEQVLA 253 (330)
T ss_pred cHHHHHHHHHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcccCCCcHHHHHHHHHHHHHHHh
Confidence 0 0 00000 00 000 000000000 00000 01123
Q ss_pred ccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCC---CEEEEEECCCCcccCCcc--cHHHHHHHHHHHHHHH
Q 004816 640 FVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGL---PVALVEYEGEQHGFRKAE--NIKFTLEQQMVFFARV 710 (729)
Q Consensus 640 ~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~---~~~~~~~~~~gH~~~~~~--~~~~~~~~~~~fl~~~ 710 (729)
.+.++++|+|++||++|.+++++.+..+++.++.++. +++++++|+++|...... .....++.+++|++++
T Consensus 254 ~~~~i~~P~Lii~G~~D~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~fl~~~ 329 (330)
T PRK10749 254 GAGDITTPLLLLQAEEERVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDFFNRH 329 (330)
T ss_pred hccCCCCCEEEEEeCCCeeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHHHhhc
Confidence 4577899999999999999999999999999987653 458999999999876433 3678889999999874
No 37
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=8.2e-18 Score=182.99 Aligned_cols=246 Identities=14% Similarity=0.105 Sum_probs=175.2
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~ 176 (729)
+++++|+..+.+....+.||.++.++ +..+.++.... ......|+++++.|+|.+..+ .+||++|+.+
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg-~~~~~lt~~~~-------~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~t-- 237 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDG-FNQFIVNRSSQ-------PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRS-- 237 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCC-CCceEeccCCC-------ccccceEcCCCCEEEEEEecCCCcEEEEEeCCC--
Confidence 67888887655433456788888773 24555554321 112456888888999987544 3899999988
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++++... .....++|||||++|+++....+ ..+||++|+++++.++|+.+......|.|||||++|+
T Consensus 238 g~~~~l~~~~----g~~~~~~wSPDG~~La~~~~~~g------~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~ 307 (429)
T PRK01742 238 GARKVVASFR----GHNGAPAFSPDGSRLAFASSKDG------VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSIL 307 (429)
T ss_pred CceEEEecCC----CccCceeECCCCCEEEEEEecCC------cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEE
Confidence 7777777542 22356899999999999875432 2579999999999999988776778899999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|.+ ++.+ ..+||.++.. ++.. ..+ ... . ..+.|||||+ |++... ..++++|+.+++.+
T Consensus 308 f~s-~~~g----~~~I~~~~~~-~~~~---~~l-~~~----~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 308 FTS-DRSG----SPQVYRMSAS-GGGA---SLV-GGR----G--YSAQISADGKTLVMING-----DNVVKQDLTSGSTE 366 (429)
T ss_pred EEE-CCCC----CceEEEEECC-CCCe---EEe-cCC----C--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeE
Confidence 987 3332 3579999876 4543 222 222 2 3578999999 777653 34788999999888
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
.++.. .....+.|++ +++.|++.+.+.+...++.++.+++..+.|+....
T Consensus 367 ~lt~~-~~~~~~~~sP------------dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g 416 (429)
T PRK01742 367 VLSST-FLDESPSISP------------NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG 416 (429)
T ss_pred EecCC-CCCCCceECC------------CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC
Confidence 77632 2334566776 88889888877666678888888888888865443
No 38
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.81 E-value=1.1e-18 Score=185.26 Aligned_cols=240 Identities=15% Similarity=0.152 Sum_probs=157.5
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+... +|.++.+..+.|.+ ++..|+||++||.+... ...+...+..|+++||.|+++|+||.|.+...
T Consensus 62 ~~~~~~~~-~g~~l~~~~~~p~~-------~~~~~~iv~lHG~~~~~-~~~~~~~~~~l~~~g~~v~~~D~~G~G~S~~~ 132 (349)
T PLN02385 62 EESYEVNS-RGVEIFSKSWLPEN-------SRPKAAVCFCHGYGDTC-TFFFEGIARKIASSGYGVFAMDYPGFGLSEGL 132 (349)
T ss_pred eeeeEEcC-CCCEEEEEEEecCC-------CCCCeEEEEECCCCCcc-chHHHHHHHHHHhCCCEEEEecCCCCCCCCCC
Confidence 33445555 89999999998864 34568999999974322 22345677888889999999999987654321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH------H-
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM------L- 610 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~------~- 610 (729)
.. ....+ ...++|+.+.++.+..+...+..+++|+||||||.+++.++. +|++++++|+.+|...... .
T Consensus 133 ~~--~~~~~-~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~~~~~~~~~~~~ 209 (349)
T PLN02385 133 HG--YIPSF-DDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCKIADDVVPPPLV 209 (349)
T ss_pred CC--CcCCH-HHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEecccccccccccCchHH
Confidence 00 00011 112677777788776554445568999999999999999988 9999999999988643210 0
Q ss_pred ---h---hh-cch---h-hhhhhhhhcCCh-----------------------hhhhh-cCcccccCCCCCCEEEEEeCC
Q 004816 611 ---R---AE-THK---F-ESRYIDNLVGSE-----------------------KDYYE-KSPINFVDKFSCPIILFQGLE 655 (729)
Q Consensus 611 ---~---~~-~~~---~-~~~~~~~~~~~~-----------------------~~~~~-~sp~~~~~~i~~PvL~i~G~~ 655 (729)
. .. ... . ...+......+. +.+.. .+....+.++++|+|++||++
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~i~~P~Lii~G~~ 289 (349)
T PLN02385 210 LQILILLANLLPKAKLVPQKDLAELAFRDLKKRKMAEYNVIAYKDKPRLRTAVELLRTTQEIEMQLEEVSLPLLILHGEA 289 (349)
T ss_pred HHHHHHHHHHCCCceecCCCccccccccCHHHHHHhhcCcceeCCCcchHHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 0 00 000 0 000000000000 00110 011233667899999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC--ccc-HHHHHHHHHHHHHHHhC
Q 004816 656 DKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK--AEN-IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 656 D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~-~~~~~~~~~~fl~~~l~ 712 (729)
|.++|++.++++++.+... +.+++++|+++|.+.. ++. ....++.+++||++++.
T Consensus 290 D~vv~~~~~~~l~~~~~~~--~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~~~~ 347 (349)
T PLN02385 290 DKVTDPSVSKFLYEKASSS--DKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDSHST 347 (349)
T ss_pred CCccChHHHHHHHHHcCCC--CceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHHhcc
Confidence 9999999999998887543 4589999999998753 222 44588999999999874
No 39
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.81 E-value=9.7e-19 Score=168.88 Aligned_cols=238 Identities=16% Similarity=0.225 Sum_probs=169.3
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
.....+... +|..+....|.|.+ ..+.+.+|+++||. +....+.|...+..|+..||.|+++|++|.|++..
T Consensus 27 ~~~~~~~n~-rG~~lft~~W~p~~------~~~pr~lv~~~HG~-g~~~s~~~~~~a~~l~~~g~~v~a~D~~GhG~SdG 98 (313)
T KOG1455|consen 27 YSESFFTNP-RGAKLFTQSWLPLS------GTEPRGLVFLCHGY-GEHSSWRYQSTAKRLAKSGFAVYAIDYEGHGRSDG 98 (313)
T ss_pred eeeeeEEcC-CCCEeEEEecccCC------CCCCceEEEEEcCC-cccchhhHHHHHHHHHhCCCeEEEeeccCCCcCCC
Confidence 344445555 89999999999965 23566799999997 34445678888999999999999999998765431
Q ss_pred hHHHhhccCCC--cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh--
Q 004816 538 EFRERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-- 612 (729)
Q Consensus 538 ~~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~-- 612 (729)
. ..... ..-++|+...++.+..+..-.....+++||||||.+++.++. +|..+.++|+.+|..-+..-..
T Consensus 99 l-----~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~i~~~~kp~ 173 (313)
T KOG1455|consen 99 L-----HAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCKISEDTKPH 173 (313)
T ss_pred C-----cccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccccCCccCCC
Confidence 1 11111 123788888888877775545568999999999999999998 9999999999988653221100
Q ss_pred ----h----cchhhhhh--------hhhhcCCh--hhhhhcCcc----------------------cccCCCCCCEEEEE
Q 004816 613 ----E----THKFESRY--------IDNLVGSE--KDYYEKSPI----------------------NFVDKFSCPIILFQ 652 (729)
Q Consensus 613 ----~----~~~~~~~~--------~~~~~~~~--~~~~~~sp~----------------------~~~~~i~~PvL~i~ 652 (729)
. ...+...+ ......++ ......+|+ ..+.++..|+|++|
T Consensus 174 p~v~~~l~~l~~liP~wk~vp~~d~~~~~~kdp~~r~~~~~npl~y~g~pRl~T~~ElLr~~~~le~~l~~vtvPflilH 253 (313)
T KOG1455|consen 174 PPVISILTLLSKLIPTWKIVPTKDIIDVAFKDPEKRKILRSDPLCYTGKPRLKTAYELLRVTADLEKNLNEVTVPFLILH 253 (313)
T ss_pred cHHHHHHHHHHHhCCceeecCCccccccccCCHHHHHHhhcCCceecCCccHHHHHHHHHHHHHHHHhcccccccEEEEe
Confidence 0 00000000 00000011 111222332 23677889999999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC---CcccHHHHHHHHHHHHHHH
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---KAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---~~~~~~~~~~~~~~fl~~~ 710 (729)
|+.|.++.+..++++|+..... +.++..|||.-|.+. .+++....+..|++|++++
T Consensus 254 G~dD~VTDp~~Sk~Lye~A~S~--DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~r 312 (313)
T KOG1455|consen 254 GTDDKVTDPKVSKELYEKASSS--DKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDER 312 (313)
T ss_pred cCCCcccCcHHHHHHHHhccCC--CCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHhc
Confidence 9999999999999999998876 448999999999975 5688889999999999875
No 40
>PHA02857 monoglyceride lipase; Provisional
Probab=99.81 E-value=9.2e-19 Score=179.89 Aligned_cols=225 Identities=17% Similarity=0.209 Sum_probs=154.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
||.++.+.+|.|.. .+.|+|+++||.. .....|...++.|+++||.|+++|+||.|.+... ......+
T Consensus 9 ~g~~l~~~~~~~~~--------~~~~~v~llHG~~--~~~~~~~~~~~~l~~~g~~via~D~~G~G~S~~~--~~~~~~~ 76 (276)
T PHA02857 9 DNDYIYCKYWKPIT--------YPKALVFISHGAG--EHSGRYEELAENISSLGILVFSHDHIGHGRSNGE--KMMIDDF 76 (276)
T ss_pred CCCEEEEEeccCCC--------CCCEEEEEeCCCc--cccchHHHHHHHHHhCCCEEEEccCCCCCCCCCc--cCCcCCH
Confidence 89999999998842 2348899999973 3456777889999999999999999987654321 0001111
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh--h-------h-c--
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR--A-------E-T-- 614 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~--~-------~-~-- 614 (729)
. ..++|+...++++.... ...+++++|||+||.+++.++. +|++++++|+.+|..+..... . . .
T Consensus 77 ~-~~~~d~~~~l~~~~~~~--~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~~~~~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 77 G-VYVRDVVQHVVTIKSTY--PGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVNAEAVPRLNLLAAKLMGIFYP 153 (276)
T ss_pred H-HHHHHHHHHHHHHHhhC--CCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccccccccHHHHHHHHHHHHhCC
Confidence 1 12677777777776542 3468999999999999999887 999999999999875432110 0 0 0
Q ss_pred ch----hhhh-----------hhhhhcC--C--hhhh-----hhc-CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHH
Q 004816 615 HK----FESR-----------YIDNLVG--S--EKDY-----YEK-SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYK 669 (729)
Q Consensus 615 ~~----~~~~-----------~~~~~~~--~--~~~~-----~~~-sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~ 669 (729)
.. +... +...... . ...+ ... .....+.++++|+|+++|++|.++|++.+.++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvliv~G~~D~i~~~~~~~~l~~ 233 (276)
T PHA02857 154 NKIVGKLCPESVSRDMDEVYKYQYDPLVNHEKIKAGFASQVLKATNKVRKIIPKIKTPILILQGTNNEISDVSGAYYFMQ 233 (276)
T ss_pred CCccCCCCHhhccCCHHHHHHHhcCCCccCCCccHHHHHHHHHHHHHHHHhcccCCCCEEEEecCCCCcCChHHHHHHHH
Confidence 00 0000 0000000 0 0000 000 0123466889999999999999999999999988
Q ss_pred HHHhCCCCEEEEEECCCCcccCCc--ccHHHHHHHHHHHHHHH
Q 004816 670 ALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFARV 710 (729)
Q Consensus 670 ~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~~~ 710 (729)
.+.. ++++++++++||.+... +..++.++.+++|++++
T Consensus 234 ~~~~---~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~~ 273 (276)
T PHA02857 234 HANC---NREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFNR 273 (276)
T ss_pred HccC---CceEEEeCCCcccccCCchhHHHHHHHHHHHHHHHh
Confidence 7743 46899999999987654 44788999999999986
No 41
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=3e-18 Score=168.69 Aligned_cols=215 Identities=21% Similarity=0.270 Sum_probs=167.9
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+.++++.. +..+.+++..|.. ....|+||++|+-.+. .......++.|+..||.|++||+-+..+....
T Consensus 3 ~~v~~~~~--~~~~~~~~a~P~~-------~~~~P~VIv~hei~Gl--~~~i~~~a~rlA~~Gy~v~~Pdl~~~~~~~~~ 71 (236)
T COG0412 3 TDVTIPAP--DGELPAYLARPAG-------AGGFPGVIVLHEIFGL--NPHIRDVARRLAKAGYVVLAPDLYGRQGDPTD 71 (236)
T ss_pred cceEeeCC--CceEeEEEecCCc-------CCCCCEEEEEecccCC--chHHHHHHHHHHhCCcEEEechhhccCCCCCc
Confidence 45677775 4899999999987 3344999999996433 34667789999999999999996542221111
Q ss_pred ------HHHhh-ccCCC-cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHH
Q 004816 539 ------FRERL-LGRWG-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 539 ------~~~~~-~~~~~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~ 610 (729)
..... ..... .....|+.++++||..++.++.+||+++|+|+||.+++.++...+.++++|+.+|..-...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~fyg~~~~~~- 150 (236)
T COG0412 72 IEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAFYGGLIADD- 150 (236)
T ss_pred ccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCccEEEEecCCCCCCc-
Confidence 11110 00111 3458999999999999988899999999999999999999996658999999998532110
Q ss_pred hhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 611 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
.....++++|+|+.+|+.|..+|......+.+.+.++++++++.+|+++.|+|
T Consensus 151 ---------------------------~~~~~~~~~pvl~~~~~~D~~~p~~~~~~~~~~~~~~~~~~~~~~y~ga~H~F 203 (236)
T COG0412 151 ---------------------------TADAPKIKVPVLLHLAGEDPYIPAADVDALAAALEDAGVKVDLEIYPGAGHGF 203 (236)
T ss_pred ---------------------------ccccccccCcEEEEecccCCCCChhHHHHHHHHHHhcCCCeeEEEeCCCcccc
Confidence 01156889999999999999999999999999999999999999999999999
Q ss_pred CCcc----------cHHHHHHHHHHHHHHHhC
Q 004816 691 RKAE----------NIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 691 ~~~~----------~~~~~~~~~~~fl~~~l~ 712 (729)
.++. .....++++++||+++++
T Consensus 204 ~~~~~~~~~~y~~~aa~~a~~~~~~ff~~~~~ 235 (236)
T COG0412 204 ANDRADYHPGYDAAAAEDAWQRVLAFFKRLLG 235 (236)
T ss_pred ccCCCcccccCCHHHHHHHHHHHHHHHHHhcc
Confidence 7542 245788999999999875
No 42
>PRK10162 acetyl esterase; Provisional
Probab=99.81 E-value=4.9e-18 Score=176.71 Aligned_cols=230 Identities=17% Similarity=0.263 Sum_probs=161.5
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc-ccchhhhHHHhh-CCcEEEEecCCCCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGY 535 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~-~G~~v~~~d~rGs~g~ 535 (729)
.+.+.++.. +| .+.+.+|.|.. ...|+||++|||++.... ..+......|+. .|+.|+.+|||.++++
T Consensus 57 ~~~~~i~~~-~g-~i~~~~y~P~~--------~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 57 TRAYMVPTP-YG-QVETRLYYPQP--------DSQATLFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEEEecC-CC-ceEEEEECCCC--------CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 566777775 55 58899999853 235899999999765333 235556777777 5999999999987642
Q ss_pred chhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh-C------CCcceEEEEecccc
Q 004816 536 GREFRERLLGRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA-F------RDTFKAGASLYGVA 605 (729)
Q Consensus 536 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~-~------~~~~~a~v~~~~~~ 605 (729)
. + ....+|+.++++|+.++ ..+|++||+|+|+|+||.+++.++. . +.+++++++++|+.
T Consensus 127 ~----------~-p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 R----------F-PQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred C----------C-CCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 1 1 12479999999999764 4578999999999999999988875 1 36789999999988
Q ss_pred ChhHHhhh---cc---hhh----hhhhhhhcCChhhhhhcCccccc--CCC---CCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 606 DLSMLRAE---TH---KFE----SRYIDNLVGSEKDYYEKSPINFV--DKF---SCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 606 d~~~~~~~---~~---~~~----~~~~~~~~~~~~~~~~~sp~~~~--~~i---~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
++...... .. .+. ..+.....++.. ...+|.... ..+ -+|++|++|+.|... .+++.++++
T Consensus 196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~y~~~~~--~~~~p~~~p~~~~l~~~lPp~~i~~g~~D~L~--de~~~~~~~ 271 (318)
T PRK10162 196 GLRDSVSRRLLGGVWDGLTQQDLQMYEEAYLSNDA--DRESPYYCLFNNDLTRDVPPCFIAGAEFDPLL--DDSRLLYQT 271 (318)
T ss_pred CCCCChhHHHhCCCccccCHHHHHHHHHHhCCCcc--ccCCcccCcchhhhhcCCCCeEEEecCCCcCc--ChHHHHHHH
Confidence 75321100 00 000 011111111111 012232111 222 379999999999886 589999999
Q ss_pred HHhCCCCEEEEEECCCCcccCCc----ccHHHHHHHHHHHHHHHhC
Q 004816 671 LKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 712 (729)
|+++|+++++++++|..|+|... +...+.++.+.+||+++++
T Consensus 272 L~~aGv~v~~~~~~g~~H~f~~~~~~~~~a~~~~~~~~~~l~~~~~ 317 (318)
T PRK10162 272 LAAHQQPCEFKLYPGTLHAFLHYSRMMDTADDALRDGAQFFTAQLK 317 (318)
T ss_pred HHHcCCCEEEEEECCCceehhhccCchHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998532 3356788899999999875
No 43
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.80 E-value=2.1e-17 Score=180.49 Aligned_cols=251 Identities=16% Similarity=0.257 Sum_probs=183.0
Q ss_pred CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC--CcEEEEeCCCCC
Q 004816 99 HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD--QRLYKHSIDSKD 176 (729)
Q Consensus 99 g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~d~~~~~ 176 (729)
+++++|+..+. ..++..||..+.+ ++..+.++...... ....|+++++.|+|..... .+||++++.+
T Consensus 155 ~~~~~~~~~~~-~~~~~~l~~~d~~-g~~~~~l~~~~~~~-------~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-- 223 (417)
T TIGR02800 155 STRIAYVSKSG-KSRRYELQVADYD-GANPQTITRSREPI-------LSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-- 223 (417)
T ss_pred CCEEEEEEEeC-CCCcceEEEEcCC-CCCCEEeecCCCce-------ecccCCCCCCEEEEEEcCCCCcEEEEEECCC--
Confidence 67888887654 3567788888776 33567776543111 1335777788899987554 4899999988
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
++.++++... .....++|||||++|+|+..... ..+||++++++++.++++........|.|+|||++|+
T Consensus 224 g~~~~~~~~~----~~~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~ 293 (417)
T TIGR02800 224 GQREKVASFP----GMNGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIA 293 (417)
T ss_pred CCEEEeecCC----CCccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEE
Confidence 7677776542 22356889999999998865432 2579999999998888887655556789999999999
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
|.+ ++.+ ..+||+++++ +++. ..+.... .....+.|+|||+ ++|.... .+..+|+.+|+.++..+
T Consensus 294 ~~s-~~~g----~~~iy~~d~~-~~~~--~~l~~~~-----~~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 294 FTS-DRGG----SPQIYMMDAD-GGEV--RRLTFRG-----GYNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGGGER 359 (417)
T ss_pred EEE-CCCC----CceEEEEECC-CCCE--EEeecCC-----CCccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCCCeE
Confidence 987 3332 3479999998 6664 2333222 3456789999999 7777766 56789999999988877
Q ss_pred EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCC
Q 004816 336 AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF 397 (729)
Q Consensus 336 ~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~ 397 (729)
.++... ....+.|++ +++.|++.+.+++...||+++.+++..+.++.+.
T Consensus 360 ~l~~~~-~~~~p~~sp------------dg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~~~ 408 (417)
T TIGR02800 360 VLTDTG-LDESPSFAP------------NGRMILYATTRGGRGVLGLVSTDGRFRARLPLGN 408 (417)
T ss_pred EccCCC-CCCCceECC------------CCCEEEEEEeCCCcEEEEEEECCCceeeECCCCC
Confidence 776432 334566765 8889999999888889999998887777777653
No 44
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.79 E-value=4.3e-18 Score=180.99 Aligned_cols=237 Identities=13% Similarity=0.112 Sum_probs=161.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
....+... ++..+.+..|.|.. ++..|+||++||.... ...|...+..|+++||.|+++|+||.|.....
T Consensus 111 ~~~~~~~~-~~~~l~~~~~~p~~-------~~~~~~Vl~lHG~~~~--~~~~~~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 111 ATSLFYGA-RRNALFCRSWAPAA-------GEMRGILIIIHGLNEH--SGRYLHFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred EEEEEECC-CCCEEEEEEecCCC-------CCCceEEEEECCchHH--HHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 45556666 88899999998854 3446899999997433 34466788899999999999999987664332
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEEeccccChhHHh---h
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGASLYGVADLSMLR---A 612 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~---~~~a~v~~~~~~d~~~~~---~ 612 (729)
.. .........+|+.++++++..+. +..+++++||||||.+++.++.+|+ +++++|+.+|...+.... .
T Consensus 181 ~~---~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a~~p~~~~~v~glVL~sP~l~~~~~~~~~~ 255 (395)
T PLN02652 181 HG---YVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAASYPSIEDKLEGIVLTSPALRVKPAHPIVG 255 (395)
T ss_pred CC---CCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHHhccCcccccceEEEECcccccccchHHHH
Confidence 11 00001122678888999887652 2357999999999999998776664 899999999875432100 0
Q ss_pred h--------cchh--hh------------hhhhhhcCChhh-------------hhhc-CcccccCCCCCCEEEEEeCCC
Q 004816 613 E--------THKF--ES------------RYIDNLVGSEKD-------------YYEK-SPINFVDKFSCPIILFQGLED 656 (729)
Q Consensus 613 ~--------~~~~--~~------------~~~~~~~~~~~~-------------~~~~-sp~~~~~~i~~PvL~i~G~~D 656 (729)
. ...+ .. ........++.. +... .....+.++++|+|++||++|
T Consensus 256 ~~~~l~~~~~p~~~~~~~~~~~~~~s~~~~~~~~~~~dp~~~~g~i~~~~~~~~~~~~~~l~~~L~~I~vPvLIi~G~~D 335 (395)
T PLN02652 256 AVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLTRNFKSVTVPFMVLHGTAD 335 (395)
T ss_pred HHHHHHHHhCCCCcccCcccccCCcCCCHHHHHHHhcCCCcccCCchHHHHHHHHHHHHHHHhhcccCCCCEEEEEeCCC
Confidence 0 0000 00 000000000000 0000 011335678999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 657 KVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 657 ~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.++|++++.++++.+... ..+++++++++|.........++++.+.+|+..++.
T Consensus 336 ~vvp~~~a~~l~~~~~~~--~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~~~~ 389 (395)
T PLN02652 336 RVTDPLASQDLYNEAASR--HKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEKRLD 389 (395)
T ss_pred CCCCHHHHHHHHHhcCCC--CceEEEECCCeEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999987543 458889999999976666788999999999999886
No 45
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.78 E-value=3.6e-17 Score=186.64 Aligned_cols=207 Identities=19% Similarity=0.237 Sum_probs=154.7
Q ss_pred hhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC--CCC------------CCcEEEEEc
Q 004816 513 SIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG--KAD------------EKRLCITGG 578 (729)
Q Consensus 513 ~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~--~~d------------~~ri~i~G~ 578 (729)
+.++|+.+||+|+.+|.||.++++..+. .++..+.+|..++|+||..+. +.| ..||+++|.
T Consensus 271 ~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~ 345 (767)
T PRK05371 271 LNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGK 345 (767)
T ss_pred HHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEE
Confidence 5588999999999999999887655432 234567899999999998532 112 479999999
Q ss_pred ChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcch------h-------hhh------------------h---hh
Q 004816 579 SAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHK------F-------ESR------------------Y---ID 623 (729)
Q Consensus 579 S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~------~-------~~~------------------~---~~ 623 (729)
||||++++.+|+ .|+.++++|..+++.++..++..... + ... + +.
T Consensus 346 SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~yr~~G~~~~~~g~~ged~d~l~~~~~~r~~~~~~~~~~~~~~~~~~~ 425 (767)
T PRK05371 346 SYLGTLPNAVATTGVEGLETIIPEAAISSWYDYYRENGLVRAPGGYQGEDLDVLAELTYSRNLLAGDYLRHNEACEKLLA 425 (767)
T ss_pred cHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHhhcCCceeccCCcCCcchhhHHHHhhhcccCcchhhcchHHHHHHHh
Confidence 999999998887 88999999999999887654322100 0 000 0 00
Q ss_pred hhc-------C-ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCccc
Q 004816 624 NLV-------G-SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695 (729)
Q Consensus 624 ~~~-------~-~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~ 695 (729)
.+. + ..+.|...+++.++++|++|+|++||.+|..+++.++.+++++|++++++.++++.++ +|.......
T Consensus 426 ~~~~~~~~~~~~y~~fW~~rn~~~~~~kIkvPvLlIhGw~D~~V~~~~s~~ly~aL~~~g~pkkL~l~~g-~H~~~~~~~ 504 (767)
T PRK05371 426 ELTAAQDRKTGDYNDFWDDRNYLKDADKIKASVLVVHGLNDWNVKPKQVYQWWDALPENGVPKKLFLHQG-GHVYPNNWQ 504 (767)
T ss_pred hhhhhhhhcCCCccHHHHhCCHhhHhhCCCCCEEEEeeCCCCCCChHHHHHHHHHHHhcCCCeEEEEeCC-CccCCCchh
Confidence 000 0 1123456678888999999999999999999999999999999999998988877765 686555455
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC-CCCCceec
Q 004816 696 IKFTLEQQMVFFARVVGHFDVA-DEIIPIKI 725 (729)
Q Consensus 696 ~~~~~~~~~~fl~~~l~~~~~~-~~~~~~~~ 725 (729)
..++.+.+.+||+++|++..+. ...+++.+
T Consensus 505 ~~d~~e~~~~Wfd~~LkG~~ng~~~~~pv~i 535 (767)
T PRK05371 505 SIDFRDTMNAWFTHKLLGIDNGVENELPAVI 535 (767)
T ss_pred HHHHHHHHHHHHHhccccCCCCcccCCcceE
Confidence 6678899999999999876554 22345544
No 46
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.78 E-value=4e-18 Score=156.21 Aligned_cols=203 Identities=19% Similarity=0.258 Sum_probs=153.0
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
-.|+++||..++ ......+.++|.++||.|.+|+|+|.|--+..+......+| .+|+.++.++|.+.++ +.
T Consensus 16 ~AVLllHGFTGt--~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy---~e 86 (243)
T COG1647 16 RAVLLLHGFTGT--PRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY---DE 86 (243)
T ss_pred EEEEEEeccCCC--cHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---Ce
Confidence 689999998443 34567788999999999999999998877777777777777 7899999999998865 68
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhh--hhhhhhcC-C----hhhhhhc---------
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFES--RYIDNLVG-S----EKDYYEK--------- 635 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~--~~~~~~~~-~----~~~~~~~--------- 635 (729)
|.+.|.||||.+|+.++. +| .+++|..++.........-...+.. +......+ + .+.++..
T Consensus 87 I~v~GlSmGGv~alkla~~~p--~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~~~e~~~~~~~~~~~~~ 164 (243)
T COG1647 87 IAVVGLSMGGVFALKLAYHYP--PKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQIDKEMKSYKDTPMTTTA 164 (243)
T ss_pred EEEEeecchhHHHHHHHhhCC--ccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHHHHHHHHhhcchHHHHH
Confidence 999999999999999998 66 7888888776542211100000000 00000000 0 0111111
Q ss_pred -------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 636 -------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 636 -------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.....++.|..|+|+++|.+|..||.+.+..+++.+... +.++.+|++.||.+..........+.++.||+
T Consensus 165 ~~~~~i~~~~~~~~~I~~pt~vvq~~~D~mv~~~sA~~Iy~~v~s~--~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~ 242 (243)
T COG1647 165 QLKKLIKDARRSLDKIYSPTLVVQGRQDEMVPAESANFIYDHVESD--DKELKWLEGSGHVITLDKERDQVEEDVITFLE 242 (243)
T ss_pred HHHHHHHHHHhhhhhcccchhheecccCCCCCHHHHHHHHHhccCC--cceeEEEccCCceeecchhHHHHHHHHHHHhh
Confidence 123347789999999999999999999999999998764 55999999999999998899999999999996
No 47
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.77 E-value=5.3e-17 Score=172.37 Aligned_cols=239 Identities=16% Similarity=0.232 Sum_probs=172.0
Q ss_pred CCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCC---CcEEEEeCCCCCCCCeecCCC
Q 004816 109 PTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD---QRLYKHSIDSKDSSPLPITPD 185 (729)
Q Consensus 109 ~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~d~~~~~~~~~~lt~~ 185 (729)
+.....+.|+..+.+ +-..+.++....... -..|++++..+.|..... .++|++++++ +...++...
T Consensus 167 ~~~~~~~~l~~~D~d-g~~~~~l~~~~~~~~-------~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~--g~~~~i~~~ 236 (425)
T COG0823 167 DGGPLPYELALGDYD-GYNQQKLTDSGSLIL-------TPAWSPDGKKLAYVSFELGGCPRIYYLDLNT--GKRPVILNF 236 (425)
T ss_pred ccCCCCceEEEEccC-CcceeEecccCccee-------ccccCcCCCceEEEEEecCCCceEEEEeccC--Cccceeecc
Confidence 344566677777766 223444444332111 234666777777765443 3699999998 666666554
Q ss_pred CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC
Q 004816 186 YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 186 ~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
......|+|||||++|+|+...+. ..+||++|+.++..++|+.+.+....|.|||||++|+|++ ++.+.
T Consensus 237 ----~g~~~~P~fspDG~~l~f~~~rdg------~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~ 305 (425)
T COG0823 237 ----NGNNGAPAFSPDGSKLAFSSSRDG------SPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTS-DRGGR 305 (425)
T ss_pred ----CCccCCccCCCCCCEEEEEECCCC------CccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEe-CCCCC
Confidence 234478999999999999988763 4689999999999889999888888999999999999998 66653
Q ss_pred CCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCe-EEEeeccCcc
Q 004816 266 PWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAE 343 (729)
Q Consensus 266 ~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~ 343 (729)
.+||+++++ ++.. .+++... .....|.|||||+ ++|.... .|.+.+...++.++. .+.++ ....
T Consensus 306 ----p~I~~~~~~-g~~~--~riT~~~-----~~~~~p~~SpdG~~i~~~~~~-~g~~~i~~~~~~~~~~~~~lt-~~~~ 371 (425)
T COG0823 306 ----PQIYLYDLE-GSQV--TRLTFSG-----GGNSNPVWSPDGDKIVFESSS-GGQWDIDKNDLASGGKIRILT-STYL 371 (425)
T ss_pred ----cceEEECCC-CCce--eEeeccC-----CCCcCccCCCCCCEEEEEecc-CCceeeEEeccCCCCcEEEcc-cccc
Confidence 489999998 5554 3333333 2224899999999 8888854 677889999987776 55554 3334
Q ss_pred ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 344 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 344 ~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
...|.|.+ +++.+++.+...+...|+.++..+...+.+.
T Consensus 372 ~e~ps~~~------------ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 372 NESPSWAP------------NGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCCCCcCC------------CCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 45788886 7888888888778889999888766655443
No 48
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.77 E-value=5.2e-17 Score=172.44 Aligned_cols=230 Identities=16% Similarity=0.221 Sum_probs=172.3
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
.+|++.|-++ ...+.++.. ......+.|+|||+.++|+.-..... .++|++++++++..++..-.+...
T Consensus 173 ~~l~~~D~dg--~~~~~l~~~----~~~~~~p~ws~~~~~~~y~~f~~~~~-----~~i~~~~l~~g~~~~i~~~~g~~~ 241 (425)
T COG0823 173 YELALGDYDG--YNQQKLTDS----GSLILTPAWSPDGKKLAYVSFELGGC-----PRIYYLDLNTGKRPVILNFNGNNG 241 (425)
T ss_pred ceEEEEccCC--cceeEeccc----CcceeccccCcCCCceEEEEEecCCC-----ceEEEEeccCCccceeeccCCccC
Confidence 4899999886 667777765 45667899999999999996655432 579999999998888777666677
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~ 323 (729)
.|+|||||++|+|..... ...+||++|+. ++.. .++.... .....|.|+|||+ |+|.+++ .|..+
T Consensus 242 ~P~fspDG~~l~f~~~rd-----g~~~iy~~dl~-~~~~--~~Lt~~~-----gi~~~Ps~spdG~~ivf~Sdr-~G~p~ 307 (425)
T COG0823 242 APAFSPDGSKLAFSSSRD-----GSPDIYLMDLD-GKNL--PRLTNGF-----GINTSPSWSPDGSKIVFTSDR-GGRPQ 307 (425)
T ss_pred CccCCCCCCEEEEEECCC-----CCccEEEEcCC-CCcc--eecccCC-----ccccCccCCCCCCEEEEEeCC-CCCcc
Confidence 899999999999998443 35789999998 5553 2233333 3335899999999 9999999 89999
Q ss_pred EEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcce-E
Q 004816 324 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDI-D 401 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v-~ 401 (729)
||+++++++..++++........|.|++ |+++|++.+...|...+...++.++. ++.++.....- .
T Consensus 308 I~~~~~~g~~~~riT~~~~~~~~p~~Sp------------dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~p 375 (425)
T COG0823 308 IYLYDLEGSQVTRLTFSGGGNSNPVWSP------------DGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESP 375 (425)
T ss_pred eEEECCCCCceeEeeccCCCCcCccCCC------------CCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCC
Confidence 9999999999999996555555889987 88889888866677889988887777 77776654332 2
Q ss_pred EeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 402 NITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+..++..++++.... ....++.+++.+..
T Consensus 376 s~~~ng~~i~~~s~~~-~~~~l~~~s~~g~~ 405 (425)
T COG0823 376 SWAPNGRMIMFSSGQG-GGSVLSLVSLDGRV 405 (425)
T ss_pred CcCCCCceEEEeccCC-CCceEEEeecccee
Confidence 2244455555544443 55667777655443
No 49
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=157.78 Aligned_cols=220 Identities=20% Similarity=0.224 Sum_probs=159.7
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGY 535 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~ 535 (729)
..+.+..++. .|..+.+..+.|.. ...++|++.||. ...-.........+.. .+++|+.+||+|.|.+
T Consensus 34 ~v~v~~~~t~-rgn~~~~~y~~~~~--------~~~~~lly~hGN--a~Dlgq~~~~~~~l~~~ln~nv~~~DYSGyG~S 102 (258)
T KOG1552|consen 34 FVEVFKVKTS-RGNEIVCMYVRPPE--------AAHPTLLYSHGN--AADLGQMVELFKELSIFLNCNVVSYDYSGYGRS 102 (258)
T ss_pred ccceEEeecC-CCCEEEEEEEcCcc--------ccceEEEEcCCc--ccchHHHHHHHHHHhhcccceEEEEeccccccc
Confidence 4466667776 88888888888854 245899999996 2211111112222333 4899999999987765
Q ss_pred chhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcc
Q 004816 536 GREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETH 615 (729)
Q Consensus 536 g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~ 615 (729)
+....+. ..++|+.++.+||.+... ..++|+++|+|+|...++.+|...+ .+++|+.+|+.+..+......
T Consensus 103 ~G~psE~-------n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~-~~alVL~SPf~S~~rv~~~~~ 173 (258)
T KOG1552|consen 103 SGKPSER-------NLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP-LAAVVLHSPFTSGMRVAFPDT 173 (258)
T ss_pred CCCcccc-------cchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC-cceEEEeccchhhhhhhccCc
Confidence 4443221 348999999999999976 7799999999999999999998433 999999999998776544311
Q ss_pred hhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCccc
Q 004816 616 KFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695 (729)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~ 695 (729)
... . .+..+.-+..++.|++|+|++||++|.++|..++.+++++.++ +++-.+..|+||... +.
T Consensus 174 ~~~-~----------~~d~f~~i~kI~~i~~PVLiiHgtdDevv~~sHg~~Lye~~k~---~~epl~v~g~gH~~~--~~ 237 (258)
T KOG1552|consen 174 KTT-Y----------CFDAFPNIEKISKITCPVLIIHGTDDEVVDFSHGKALYERCKE---KVEPLWVKGAGHNDI--EL 237 (258)
T ss_pred ceE-E----------eeccccccCcceeccCCEEEEecccCceecccccHHHHHhccc---cCCCcEEecCCCccc--cc
Confidence 100 0 1112222667888899999999999999999999999999986 578888899999743 33
Q ss_pred HHHHHHHHHHHHHHHhC
Q 004816 696 IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 696 ~~~~~~~~~~fl~~~l~ 712 (729)
-.++++.+..|+....+
T Consensus 238 ~~~yi~~l~~f~~~~~~ 254 (258)
T KOG1552|consen 238 YPEYIEHLRRFISSVLP 254 (258)
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 34677777777766554
No 50
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.75 E-value=2.5e-17 Score=149.27 Aligned_cols=231 Identities=19% Similarity=0.205 Sum_probs=168.4
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhh-HHHhhCCcEEEEecCCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSI-QYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~-~~la~~G~~v~~~d~rGs~ 533 (729)
-..-+.+++.++ |..++++|+... ....|+++++|+..++. ..+-+.+ -++...+.+|+.++|||-|
T Consensus 51 n~pye~i~l~T~-D~vtL~a~~~~~---------E~S~pTlLyfh~NAGNm--Ghr~~i~~~fy~~l~mnv~ivsYRGYG 118 (300)
T KOG4391|consen 51 NMPYERIELRTR-DKVTLDAYLMLS---------ESSRPTLLYFHANAGNM--GHRLPIARVFYVNLKMNVLIVSYRGYG 118 (300)
T ss_pred CCCceEEEEEcC-cceeEeeeeecc---------cCCCceEEEEccCCCcc--cchhhHHHHHHHHcCceEEEEEeeccc
Confidence 345688999998 999999999873 23679999999974333 2222233 3456779999999999754
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~ 612 (729)
.+..+..+. .-.-|..++++||..++..|..|+++.|.|.||..|+.+++ ..+++.|+++.+-+.++..+.-
T Consensus 119 ~S~GspsE~-------GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SIp~~~i 191 (300)
T KOG4391|consen 119 KSEGSPSEE-------GLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSIPHMAI 191 (300)
T ss_pred cCCCCcccc-------ceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccchhhhh
Confidence 432221111 12578999999999999999999999999999999999988 7889999999998888744332
Q ss_pred -hcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 613 -ETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 613 -~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
....+...|+..+. .+..| .....+...+.|.|++.|..|.+|||.++.++++......+ ++.+||++.|+-.
T Consensus 192 ~~v~p~~~k~i~~lc-~kn~~---~S~~ki~~~~~P~LFiSGlkDelVPP~~Mr~Ly~~c~S~~K--rl~eFP~gtHNDT 265 (300)
T KOG4391|consen 192 PLVFPFPMKYIPLLC-YKNKW---LSYRKIGQCRMPFLFISGLKDELVPPVMMRQLYELCPSRTK--RLAEFPDGTHNDT 265 (300)
T ss_pred heeccchhhHHHHHH-HHhhh---cchhhhccccCceEEeecCccccCCcHHHHHHHHhCchhhh--hheeCCCCccCce
Confidence 22222333333221 01122 22334557789999999999999999999999999877644 8999999999732
Q ss_pred CcccHHHHHHHHHHHHHHHhC
Q 004816 692 KAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 692 ~~~~~~~~~~~~~~fl~~~l~ 712 (729)
. -..-.++.+.+|+.+...
T Consensus 266 ~--i~dGYfq~i~dFlaE~~~ 284 (300)
T KOG4391|consen 266 W--ICDGYFQAIEDFLAEVVK 284 (300)
T ss_pred E--EeccHHHHHHHHHHHhcc
Confidence 2 123678889999999876
No 51
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.75 E-value=1.2e-17 Score=157.19 Aligned_cols=235 Identities=21% Similarity=0.285 Sum_probs=162.7
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
-.++|.+. +|.+|.+|+..|.. ..++.|+||..||..++...+ . ..-.|+..||+|+..|.||.+++..+
T Consensus 57 ydvTf~g~-~g~rI~gwlvlP~~------~~~~~P~vV~fhGY~g~~g~~--~-~~l~wa~~Gyavf~MdvRGQg~~~~d 126 (321)
T COG3458 57 YDVTFTGY-GGARIKGWLVLPRH------EKGKLPAVVQFHGYGGRGGEW--H-DMLHWAVAGYAVFVMDVRGQGSSSQD 126 (321)
T ss_pred EEEEEecc-CCceEEEEEEeecc------cCCccceEEEEeeccCCCCCc--c-ccccccccceeEEEEecccCCCcccc
Confidence 45777786 99999999999987 347899999999974443222 1 22356889999999999998876331
Q ss_pred HHHhhcc-------CCC----------cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEe
Q 004816 539 FRERLLG-------RWG----------IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 601 (729)
Q Consensus 539 ~~~~~~~-------~~~----------~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~ 601 (729)
-.....+ ..| ...+.|+..+++-+.+...+|.+||++.|.|.||.+++.++...++++++++.
T Consensus 127 t~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~~~ 206 (321)
T COG3458 127 TADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVVAD 206 (321)
T ss_pred CCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhccccc
Confidence 1110000 001 12388999999999999999999999999999999999999977799999999
Q ss_pred ccccC-hhHHhhh--cchhhh--hhhhhhcC-Ch---hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 602 YGVAD-LSMLRAE--THKFES--RYIDNLVG-SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 602 ~~~~d-~~~~~~~--~~~~~~--~~~~~~~~-~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
+|+.. ....... ...+.+ .|....-. .. +.+...+-.+.+.+++.|+|+..|.-|++|||....+++++|.
T Consensus 207 ~Pfl~df~r~i~~~~~~~ydei~~y~k~h~~~e~~v~~TL~yfD~~n~A~RiK~pvL~svgL~D~vcpPstqFA~yN~l~ 286 (321)
T COG3458 207 YPFLSDFPRAIELATEGPYDEIQTYFKRHDPKEAEVFETLSYFDIVNLAARIKVPVLMSVGLMDPVCPPSTQFAAYNALT 286 (321)
T ss_pred ccccccchhheeecccCcHHHHHHHHHhcCchHHHHHHHHhhhhhhhHHHhhccceEEeecccCCCCCChhhHHHhhccc
Confidence 99753 2221110 111110 11111100 11 2233345566788999999999999999999999999999997
Q ss_pred hCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 673 ENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 673 ~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
. +.++.+||.-+|.-. +. ...+.+..|+...
T Consensus 287 ~---~K~i~iy~~~aHe~~-p~---~~~~~~~~~l~~l 317 (321)
T COG3458 287 T---SKTIEIYPYFAHEGG-PG---FQSRQQVHFLKIL 317 (321)
T ss_pred C---CceEEEeeccccccC-cc---hhHHHHHHHHHhh
Confidence 5 447888887778522 22 2223456666554
No 52
>PRK11460 putative hydrolase; Provisional
Probab=99.75 E-value=7.3e-17 Score=159.83 Aligned_cols=185 Identities=18% Similarity=0.093 Sum_probs=130.8
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCC----CCchhHHHhhccCCCcc-------cHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGST----GYGREFRERLLGRWGIV-------DVNDCCS 557 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~----g~g~~~~~~~~~~~~~~-------~~~D~~~ 557 (729)
.+..|+||++||.+.+ ...+...+..|...++.+..+.++|.. +.|+.|.... ...... ..+.+.+
T Consensus 13 ~~~~~~vIlLHG~G~~--~~~~~~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~~ 89 (232)
T PRK11460 13 KPAQQLLLLFHGVGDN--PVAMGEIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFIE 89 (232)
T ss_pred CCCCcEEEEEeCCCCC--hHHHHHHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHHH
Confidence 3456899999997433 345667788888877666666666532 2234443211 100111 1233455
Q ss_pred HHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcC
Q 004816 558 CATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKS 636 (729)
Q Consensus 558 ~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 636 (729)
.++++.++..++.+||+++|+|+||.+++.++. +|+.+.++++.++.... . +
T Consensus 90 ~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~~~-----------------~---~------- 142 (232)
T PRK11460 90 TVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRYAS-----------------L---P------- 142 (232)
T ss_pred HHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccccc-----------------c---c-------
Confidence 667777777788899999999999999999887 88888888877663210 0 0
Q ss_pred cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 637 PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 637 p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.....++|+|++||++|.+||++.+.++++.|++.|.++++++||+++|.+.. +.++.+.+||.+.+
T Consensus 143 ---~~~~~~~pvli~hG~~D~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~-----~~~~~~~~~l~~~l 209 (232)
T PRK11460 143 ---ETAPTATTIHLIHGGEDPVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDP-----RLMQFALDRLRYTV 209 (232)
T ss_pred ---ccccCCCcEEEEecCCCCccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCH-----HHHHHHHHHHHHHc
Confidence 01123689999999999999999999999999999999999999999999853 45556666666665
No 53
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.74 E-value=6.7e-17 Score=165.23 Aligned_cols=235 Identities=17% Similarity=0.222 Sum_probs=159.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
.+..+... ||..+.+..+.+.. .+..+||++||. ......|...+..|..+||.|+++|.||.|.+.+
T Consensus 10 ~~~~~~~~-d~~~~~~~~~~~~~--------~~~g~Vvl~HG~--~Eh~~ry~~la~~l~~~G~~V~~~D~RGhG~S~r- 77 (298)
T COG2267 10 TEGYFTGA-DGTRLRYRTWAAPE--------PPKGVVVLVHGL--GEHSGRYEELADDLAARGFDVYALDLRGHGRSPR- 77 (298)
T ss_pred ccceeecC-CCceEEEEeecCCC--------CCCcEEEEecCc--hHHHHHHHHHHHHHHhCCCEEEEecCCCCCCCCC-
Confidence 44556665 89999999998754 122799999998 5555667778999999999999999998877653
Q ss_pred HHHhhccCCC--cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--Hhhh
Q 004816 539 FRERLLGRWG--IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--LRAE 613 (729)
Q Consensus 539 ~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~--~~~~ 613 (729)
...+... ..-..|+...++.+... .-..+++++||||||.+++.++. ++..++++|+.+|...+.. ....
T Consensus 78 ---~~rg~~~~f~~~~~dl~~~~~~~~~~--~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~~~~~~~ 152 (298)
T COG2267 78 ---GQRGHVDSFADYVDDLDAFVETIAEP--DPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGGAILRLI 152 (298)
T ss_pred ---CCcCCchhHHHHHHHHHHHHHHHhcc--CCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCChhHHHHH
Confidence 1111111 11145555555555543 12478999999999999999998 8899999999999877662 1000
Q ss_pred -c-------chhhhhh-hh-----hhc-----CChhh--hhhcCcc-----------------------cccCCCCCCEE
Q 004816 614 -T-------HKFESRY-ID-----NLV-----GSEKD--YYEKSPI-----------------------NFVDKFSCPII 649 (729)
Q Consensus 614 -~-------~~~~~~~-~~-----~~~-----~~~~~--~~~~sp~-----------------------~~~~~i~~PvL 649 (729)
. ..+...+ .. ... .+++. ....+|. ....++++|+|
T Consensus 153 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~PvL 232 (298)
T COG2267 153 LARLALKLLGRIRPKLPVDSNLLEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRWVDLALLAGRVPALRDAPAIALPVL 232 (298)
T ss_pred HHHHhcccccccccccccCcccccCcCcchhhcCHHHHHHHhcCCccccCCccHHHHHHHHHhhcccchhccccccCCEE
Confidence 0 0000000 00 000 01100 0111221 12456789999
Q ss_pred EEEeCCCCCCC-hHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccH--HHHHHHHHHHHHHHhC
Q 004816 650 LFQGLEDKVVP-PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENI--KFTLEQQMVFFARVVG 712 (729)
Q Consensus 650 ~i~G~~D~~vp-~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~--~~~~~~~~~fl~~~l~ 712 (729)
+++|++|.+++ .+...++++.+... ++++++++|+.|...+.... .++++.+.+|+.+++.
T Consensus 233 ll~g~~D~vv~~~~~~~~~~~~~~~~--~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~~~~ 296 (298)
T COG2267 233 LLQGGDDRVVDNVEGLARFFERAGSP--DKELKVIPGAYHELLNEPDRAREEVLKDILAWLAEALP 296 (298)
T ss_pred EEecCCCccccCcHHHHHHHHhcCCC--CceEEecCCcchhhhcCcchHHHHHHHHHHHHHHhhcc
Confidence 99999999999 67666666665543 36999999999998777666 8999999999998875
No 54
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.72 E-value=4.6e-16 Score=174.41 Aligned_cols=246 Identities=17% Similarity=0.158 Sum_probs=159.1
Q ss_pred eccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc--cccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 464 PTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 464 ~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~--~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
+.. ||.+|.+.++.|.+ .++.|+||++||...... ........+.|+++||.|+.+|+||.++++..+..
T Consensus 2 ~~~-DG~~L~~~~~~P~~-------~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~ 73 (550)
T TIGR00976 2 PMR-DGTRLAIDVYRPAG-------GGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQGYAVVIQDTRGRGASEGEFDL 73 (550)
T ss_pred cCC-CCCEEEEEEEecCC-------CCCCCEEEEecCCCCchhhccccccccHHHHHhCCcEEEEEeccccccCCCceEe
Confidence 345 89999999999975 346899999998643221 01112245789999999999999998776544321
Q ss_pred hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhh-
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFES- 619 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~- 619 (729)
++....+|+.++++|+.+++..+ .||+++|+||||++++.++. +|+.++++|+.++..++.........+..
T Consensus 74 -----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~~~g~~~~~ 147 (550)
T TIGR00976 74 -----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIAFPGALRLD 147 (550)
T ss_pred -----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhccCCeeccc
Confidence 12356899999999999997766 69999999999999999988 88999999999888775432100000000
Q ss_pred ---hhhh----------------------hhcC---Ch-------------------------------hhhhhcCcccc
Q 004816 620 ---RYID----------------------NLVG---SE-------------------------------KDYYEKSPINF 640 (729)
Q Consensus 620 ---~~~~----------------------~~~~---~~-------------------------------~~~~~~sp~~~ 640 (729)
.+.. .... .. +.+...+....
T Consensus 148 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 227 (550)
T TIGR00976 148 VLLGWWALLATDSMRPRADDRPPRYAAAARLAQSYDDCQTALSHTPRSSVLALDRFIGWWIQVVDDDYDESWVSISLWRD 227 (550)
T ss_pred hhHHHHHhhccccccccccccccchHHHHHHhhhhhhHHHHHhcCCccccccccccchhhhhccCCCCChhhccCchhhH
Confidence 0000 0000 00 00111222335
Q ss_pred cCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC---------CcccHH-HHHHHHHHHHHHH
Q 004816 641 VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---------KAENIK-FTLEQQMVFFARV 710 (729)
Q Consensus 641 ~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---------~~~~~~-~~~~~~~~fl~~~ 710 (729)
++++++|+|++.|-.|. ....+.+.++.+.+.+ +..+++-|. .|... ...... .....+++||+.+
T Consensus 228 ~~~i~vP~l~~~gw~D~--~~~g~~~~~~~~~~~~-~~~lilGpw-~H~~~~~~~~~~~~g~~~~~~~~~~~~~~wfD~~ 303 (550)
T TIGR00976 228 LGGSDVPTLVTGGWYDN--HSRGSIRLFLAVHRGG-AQRLVVGPW-THSGLGGRVGDGNYGMAALSWVDEAEQLAFFDRH 303 (550)
T ss_pred hcCCCCCEEEeCcccCC--CCchHHHHHHHHhhcC-CceEEEccC-CCCCcccccCCCccCccccccchhhhhHHHHHHH
Confidence 66899999999999994 4456777777877654 556765554 57511 001000 1111468999999
Q ss_pred hCCCCCC-CCCCceeccC
Q 004816 711 VGHFDVA-DEIIPIKIDN 727 (729)
Q Consensus 711 l~~~~~~-~~~~~~~~~~ 727 (729)
|++..+. ...+++.+..
T Consensus 304 Lkg~~~g~~~~p~v~~~~ 321 (550)
T TIGR00976 304 LKGGTTGVRSEPKVRLFT 321 (550)
T ss_pred hCCCCCCCCCCCceEEEe
Confidence 9976543 3445666543
No 55
>PRK10985 putative hydrolase; Provisional
Probab=99.71 E-value=5.5e-16 Score=162.42 Aligned_cols=235 Identities=14% Similarity=0.110 Sum_probs=146.5
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
..+... ||..+......... .....|+||++||.+++.........+..|.++||.|+++|+||.++......
T Consensus 34 ~~~~~~-dg~~~~l~w~~~~~------~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG~g~~~~~~~ 106 (324)
T PRK10985 34 QRLELP-DGDFVDLAWSEDPA------QARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRGCSGEPNRLH 106 (324)
T ss_pred eEEECC-CCCEEEEecCCCCc------cCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCCCCCCccCCc
Confidence 345565 88776544322211 13456899999998655433334557788999999999999999765432111
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEEeccccChhHHhhhc---
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVADLSMLRAET--- 614 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~--~~~a~v~~~~~~d~~~~~~~~--- 614 (729)
. .+.....+|+..+++++.++. ...++.++|||+||.+++.++. +++ .++++|++++..++.......
T Consensus 107 ~----~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~~~~~~~~~~ 180 (324)
T PRK10985 107 R----IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLEACSYRMEQG 180 (324)
T ss_pred c----eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHHHHHHHHhhh
Confidence 1 011124799999999998863 3468999999999998777766 443 388888888876643211000
Q ss_pred -----c-----hhhhhh---hhh-----------h------------c-----C--C-hhhhhhcCcccccCCCCCCEEE
Q 004816 615 -----H-----KFESRY---IDN-----------L------------V-----G--S-EKDYYEKSPINFVDKFSCPIIL 650 (729)
Q Consensus 615 -----~-----~~~~~~---~~~-----------~------------~-----~--~-~~~~~~~sp~~~~~~i~~PvL~ 650 (729)
. ...... ... . . + . .+.|...++...++++++|+|+
T Consensus 181 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~g~~~~~~~y~~~~~~~~l~~i~~P~li 260 (324)
T PRK10985 181 FSRVYQRYLLNLLKANAARKLAAYPGTLPINLAQLKSVRRLREFDDLITARIHGFADAIDYYRQCSALPLLNQIRKPTLI 260 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHhcCCcHHHHhhhheeccCCCCCHHHHHHHCChHHHHhCCCCCEEE
Confidence 0 000000 000 0 0 0 0 1233344555667889999999
Q ss_pred EEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc----ccHHHHHHHHHHHHHHHhC
Q 004816 651 FQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 651 i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 712 (729)
++|++|++++++....+.+ ....+++++++++||...-. ....-.-+.+.+||+..+.
T Consensus 261 i~g~~D~~~~~~~~~~~~~----~~~~~~~~~~~~~GH~~~~~g~~~~~~~w~~~~~~~~~~~~~~ 322 (324)
T PRK10985 261 IHAKDDPFMTHEVIPKPES----LPPNVEYQLTEHGGHVGFVGGTLLKPQMWLEQRIPDWLTTYLE 322 (324)
T ss_pred EecCCCCCCChhhChHHHH----hCCCeEEEECCCCCceeeCCCCCCCCCccHHHHHHHHHHHhhc
Confidence 9999999998866655432 22367889999999963211 1112344567888877653
No 56
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.71 E-value=1.3e-16 Score=156.52 Aligned_cols=189 Identities=17% Similarity=0.135 Sum_probs=123.3
Q ss_pred EEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCCchhH--HHhhccCCCcc
Q 004816 474 AYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREF--RERLLGRWGIV 550 (729)
Q Consensus 474 ~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~g~~~--~~~~~~~~~~~ 550 (729)
+++|.|++. .+++|+||++||+++........ .+.+.+.+.||.|++||++|+++.+..| ........+..
T Consensus 1 ~~ly~P~~~------~~~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~ 74 (212)
T TIGR01840 1 MYVYVPAGL------TGPRALVLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTG 74 (212)
T ss_pred CEEEcCCCC------CCCCCEEEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCc
Confidence 367888762 45789999999986543322111 2344455679999999999876543322 11111122334
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--HhhhcchhhhhhhhhhcC
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--LRAETHKFESRYIDNLVG 627 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~--~~~~~~~~~~~~~~~~~~ 627 (729)
+..|+..+++++.++..+|++||+|+|+|+||++++.++. +|++|+++++.++...... .......+ ....
T Consensus 75 ~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~ 148 (212)
T TIGR01840 75 EVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLPYGEASSSISATPQM------CTAA 148 (212)
T ss_pred cHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCcccccccchhhHhhc------CCCC
Confidence 6788999999999988899999999999999999999987 9999999999887642110 00000000 0000
Q ss_pred Chhhhhhc-Cc-ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 628 SEKDYYEK-SP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 628 ~~~~~~~~-sp-~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
....+.+. .. .........|++++||++|.+||++.+++++++|++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~p~~~i~hG~~D~vVp~~~~~~~~~~l~~~ 197 (212)
T TIGR01840 149 TAASVCRLVRGMQSEYNGPTPIMSVVHGDADYTVLPGNADEIRDAMLKV 197 (212)
T ss_pred CHHHHHHHHhccCCcccCCCCeEEEEEcCCCceeCcchHHHHHHHHHHh
Confidence 01111100 00 0112233456789999999999999999999999985
No 57
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.71 E-value=1.5e-15 Score=160.76 Aligned_cols=275 Identities=15% Similarity=0.151 Sum_probs=184.8
Q ss_pred EEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCC------
Q 004816 116 VLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEP------ 189 (729)
Q Consensus 116 ~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~------ 189 (729)
.+|.++.. +++.+.+.... ....-..|+++++.++|+. +++||+.++.+ +..++||.+....
T Consensus 24 ~y~i~d~~-~~~~~~l~~~~-------~~~~~~~~sP~g~~~~~v~--~~nly~~~~~~--~~~~~lT~dg~~~i~nG~~ 91 (353)
T PF00930_consen 24 DYYIYDIE-TGEITPLTPPP-------PKLQDAKWSPDGKYIAFVR--DNNLYLRDLAT--GQETQLTTDGEPGIYNGVP 91 (353)
T ss_dssp EEEEEETT-TTEEEESS-EE-------TTBSEEEE-SSSTEEEEEE--TTEEEEESSTT--SEEEESES--TTTEEESB-
T ss_pred eEEEEecC-CCceEECcCCc-------cccccceeecCCCeeEEEe--cCceEEEECCC--CCeEEeccccceeEEcCcc
Confidence 45556555 23455555431 0112345777888999996 46799999988 8889999763110
Q ss_pred --------ceeeecceecCCCCEEEEEEeccCCC---------------------------CCCcceEEEEEEcCCCceE
Q 004816 190 --------LVSYADGIFDPRFNRYVTVREDRRQD---------------------------ALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 190 --------~~~~~~~~~SPdG~~l~~~~~~~~~~---------------------------~~~~~~~l~~~dl~~g~~~ 234 (729)
-.+...+-|||||++|+|.+-+...- ..+....|+++++++++..
T Consensus 92 dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~ 171 (353)
T PF00930_consen 92 DWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT 171 (353)
T ss_dssp -HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC
T ss_pred ceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE
Confidence 01224456999999999997654321 1124567999999998875
Q ss_pred Eeee------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC-C
Q 004816 235 VLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-S 307 (729)
Q Consensus 235 ~lt~------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws-p 307 (729)
.+.. .......+.|++|+++|++...++.. +...|.++|+. +|..+.+. ......|......+.+. +
T Consensus 172 ~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q---~~~~l~~~d~~-tg~~~~~~--~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 172 ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQ---NRLDLVLCDAS-TGETRVVL--EETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTS---TEEEEEEEEEC-TTTCEEEE--EEESSSSSSSSSEEEE-TT
T ss_pred EeeeccccCCCccCcccceecCCCcEEEEEEcccCC---CEEEEEEEECC-CCceeEEE--EecCCcceeeecccccccC
Confidence 5432 22344577999999988888777655 56788999998 67653222 33333565444556665 7
Q ss_pred CCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccC-CcccccCcceeeeeecCCCCEEEEEEEE--CCeEEEEEE
Q 004816 308 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQ--NGRSYLGIL 383 (729)
Q Consensus 308 DG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~l~~~s~~--~g~~~ly~~ 383 (729)
|+. +++.+.+ .|+.+||+++.+++..+.||.++.++.. ..|.. +++.|||++.. .+..|||++
T Consensus 246 ~~~~~l~~s~~-~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~------------~~~~iyf~a~~~~p~~r~lY~v 312 (353)
T PF00930_consen 246 DGNEFLWISER-DGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDE------------DNNRIYFTANGDNPGERHLYRV 312 (353)
T ss_dssp TSSEEEEEEET-TSSEEEEEEETTSSEEEESS-SSS-EEEEEEEEC------------TSSEEEEEESSGGTTSBEEEEE
T ss_pred CCCEEEEEEEc-CCCcEEEEEcccccceeccccCceeecccceEcC------------CCCEEEEEecCCCCCceEEEEE
Confidence 887 8888886 8999999999999999999977766643 23332 77899999986 457899999
Q ss_pred ECC-CCceEeeccCCcce--EEeeeeCCEEEEEEeCCCCCc
Q 004816 384 DDF-GHSLSLLDIPFTDI--DNITLGNDCLFVEGASGVEPS 421 (729)
Q Consensus 384 d~~-~g~~~~lt~~~~~v--~~~~~~~~~~~~~~~~~~~~~ 421 (729)
+++ ++++++||...... ..++++++.++...++++.|.
T Consensus 313 ~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s~~~~P~ 353 (353)
T PF00930_consen 313 SLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYSGPDTPP 353 (353)
T ss_dssp ETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEESSSSCE
T ss_pred EeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEcCCCCCC
Confidence 999 99999999876654 333777888888898888763
No 58
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.69 E-value=1.2e-15 Score=159.29 Aligned_cols=223 Identities=22% Similarity=0.262 Sum_probs=156.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc--hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhcc
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLG 545 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~--~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~ 545 (729)
.+..+.+.+|.|.. . .....|+||++|||.+....... ......++..|+.|+.+|||-.+.+.
T Consensus 60 ~~~~~~~~~y~p~~-~----~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~~--------- 125 (312)
T COG0657 60 SGDGVPVRVYRPDR-K----AAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEHP--------- 125 (312)
T ss_pred CCCceeEEEECCCC-C----CCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCCC---------
Confidence 55567788899821 0 24568999999999775544432 34556667789999999999776531
Q ss_pred CCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh--CC---CcceEEEEeccccChhHHhhhcc--
Q 004816 546 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA--FR---DTFKAGASLYGVADLSMLRAETH-- 615 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~--~~---~~~~a~v~~~~~~d~~~~~~~~~-- 615 (729)
+ ...++|+.++++|+.++ ..+|+++|+++|+|.||.+++.++. +. ....+.++++|..|...-.....
T Consensus 126 -~-p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~~~~~~~~~ 203 (312)
T COG0657 126 -F-PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTSSAASLPGY 203 (312)
T ss_pred -C-CchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcccccchhhc
Confidence 1 13489999999999987 3589999999999999999998886 32 36799999999988765000000
Q ss_pred ---------hhhhhhhhhhcCChhhh--hhcCccccc--CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 616 ---------KFESRYIDNLVGSEKDY--YEKSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 616 ---------~~~~~~~~~~~~~~~~~--~~~sp~~~~--~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
.....+.....+..... ...+|+... .. -+|+++++|+.|.+.+ ++..+.++|+++|++++++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~spl~~~~~~~-lPP~~i~~a~~D~l~~--~~~~~a~~L~~agv~~~~~~ 280 (312)
T COG0657 204 GEADLLDAAAILAWFADLYLGAAPDREDPEASPLASDDLSG-LPPTLIQTAEFDPLRD--EGEAYAERLRAAGVPVELRV 280 (312)
T ss_pred CCccccCHHHHHHHHHHHhCcCccccCCCccCccccccccC-CCCEEEEecCCCcchh--HHHHHHHHHHHcCCeEEEEE
Confidence 00111222222211111 234554433 23 4789999999999876 89999999999999999999
Q ss_pred ECCCCcccC--CcccHHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFR--KAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 683 ~~~~gH~~~--~~~~~~~~~~~~~~fl~~ 709 (729)
+++..|+|. ........+..+.+|+..
T Consensus 281 ~~g~~H~f~~~~~~~a~~~~~~~~~~l~~ 309 (312)
T COG0657 281 YPGMIHGFDLLTGPEARSALRQIAAFLRA 309 (312)
T ss_pred eCCcceeccccCcHHHHHHHHHHHHHHHH
Confidence 999999983 333344556677777763
No 59
>PLN02511 hydrolase
Probab=99.69 E-value=1.6e-15 Score=162.14 Aligned_cols=239 Identities=15% Similarity=0.137 Sum_probs=149.8
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+...+... ||..+....+.+.... .....|+||++||..++.....+...+..+.++||.|+++|+||.|+....
T Consensus 72 ~re~l~~~-DG~~~~ldw~~~~~~~----~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~g~~vv~~d~rG~G~s~~~ 146 (388)
T PLN02511 72 RRECLRTP-DGGAVALDWVSGDDRA----LPADAPVLILLPGLTGGSDDSYVRHMLLRARSKGWRVVVFNSRGCADSPVT 146 (388)
T ss_pred eEEEEECC-CCCEEEEEecCccccc----CCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEecCCCCCCCCC
Confidence 44456666 8888876554432110 123468999999985554332334456667789999999999987764321
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCc--ceEEEEeccccChhHH----h
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDT--FKAGASLYGVADLSML----R 611 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~--~~a~v~~~~~~d~~~~----~ 611 (729)
- ...+.....+|+.++++++..+. ...++.++|||+||.+++.++. ++++ +.+++++++..++... .
T Consensus 147 ~----~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l~~~~~~~~ 220 (388)
T PLN02511 147 T----PQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDLVIADEDFH 220 (388)
T ss_pred C----cCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCHHHHHHHHh
Confidence 0 01111234789999999998763 3468999999999999999987 7776 7888877766554110 0
Q ss_pred h------------hcchhhh-h--hhh---------------------h-----hcC--Ch-hhhhhcCcccccCCCCCC
Q 004816 612 A------------ETHKFES-R--YID---------------------N-----LVG--SE-KDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 612 ~------------~~~~~~~-~--~~~---------------------~-----~~~--~~-~~~~~~sp~~~~~~i~~P 647 (729)
. ....... . ... . ..+ .. +.|...++...+.+|++|
T Consensus 221 ~~~~~~y~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~t~~~~gf~~~~~yy~~~s~~~~L~~I~vP 300 (388)
T PLN02511 221 KGFNNVYDKALAKALRKIFAKHALLFEGLGGEYNIPLVANAKTVRDFDDGLTRVSFGFKSVDAYYSNSSSSDSIKHVRVP 300 (388)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCHHHHHhCCCHHHHHHhhhhhcCCCCCHHHHHHHcCchhhhccCCCC
Confidence 0 0000000 0 000 0 000 11 223455667788899999
Q ss_pred EEEEEeCCCCCCChHHHH-HHHHHHHhCCCCEEEEEECCCCcccCC--cccH---HHHHHHHHHHHHHHhC
Q 004816 648 IILFQGLEDKVVPPDQAR-KIYKALKENGLPVALVEYEGEQHGFRK--AENI---KFTLEQQMVFFARVVG 712 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~-~~~~~l~~~g~~~~~~~~~~~gH~~~~--~~~~---~~~~~~~~~fl~~~l~ 712 (729)
+|+++|++|+++|.+... ... +....+++++++++||.... ++.. .-..+.+.+||+....
T Consensus 301 tLiI~g~dDpi~p~~~~~~~~~----~~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl~~~~~ 367 (388)
T PLN02511 301 LLCIQAANDPIAPARGIPREDI----KANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFLEALEE 367 (388)
T ss_pred eEEEEcCCCCcCCcccCcHhHH----hcCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999999999999875432 222 22346799999999996322 1110 1245677888887764
No 60
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.69 E-value=5.1e-16 Score=159.74 Aligned_cols=229 Identities=20% Similarity=0.229 Sum_probs=141.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
..+.++++-. |..|.+++..|.. .++.|+||++-|. .+.....+.....+|+.+|++++++|.+|.|...
T Consensus 164 ~i~~v~iP~e--g~~I~g~LhlP~~-------~~p~P~VIv~gGl-Ds~qeD~~~l~~~~l~~rGiA~LtvDmPG~G~s~ 233 (411)
T PF06500_consen 164 PIEEVEIPFE--GKTIPGYLHLPSG-------EKPYPTVIVCGGL-DSLQEDLYRLFRDYLAPRGIAMLTVDMPGQGESP 233 (411)
T ss_dssp EEEEEEEEET--TCEEEEEEEESSS-------SS-EEEEEEE--T-TS-GGGGHHHHHCCCHHCT-EEEEE--TTSGGGT
T ss_pred CcEEEEEeeC--CcEEEEEEEcCCC-------CCCCCEEEEeCCc-chhHHHHHHHHHHHHHhCCCEEEEEccCCCcccc
Confidence 4688888884 7999999999975 5678988887554 3433333445557789999999999999765321
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC-hhHHhhhc
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD-LSMLRAET 614 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d-~~~~~~~~ 614 (729)
......+. -.-..++++||...+.+|..||+++|.|+||+.|.+++. ++++++++|+..|++. +..-....
T Consensus 234 ---~~~l~~D~----~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft~~~~~ 306 (411)
T PF06500_consen 234 ---KWPLTQDS----SRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFTDPEWQ 306 (411)
T ss_dssp ---TT-S-S-C----CHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH-HHHH
T ss_pred ---cCCCCcCH----HHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhccHHHH
Confidence 11111121 123568899999999999999999999999999999997 8999999999998643 22111111
Q ss_pred chhhhhhhhh---hcC----Chh----hhhhcCcccc--c--CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 615 HKFESRYIDN---LVG----SEK----DYYEKSPINF--V--DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 615 ~~~~~~~~~~---~~~----~~~----~~~~~sp~~~--~--~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
......|++. .+| +.+ ....+|...+ + .+..+|+|.+.+++|.++|.++..-++.. +.+-+
T Consensus 307 ~~~P~my~d~LA~rlG~~~~~~~~l~~el~~~SLk~qGlL~~rr~~~plL~i~~~~D~v~P~eD~~lia~~----s~~gk 382 (411)
T PF06500_consen 307 QRVPDMYLDVLASRLGMAAVSDESLRGELNKFSLKTQGLLSGRRCPTPLLAINGEDDPVSPIEDSRLIAES----STDGK 382 (411)
T ss_dssp TTS-HHHHHHHHHHCT-SCE-HHHHHHHGGGGSTTTTTTTTSS-BSS-EEEEEETT-SSS-HHHHHHHHHT----BTT-E
T ss_pred hcCCHHHHHHHHHHhCCccCCHHHHHHHHHhcCcchhccccCCCCCcceEEeecCCCCCCCHHHHHHHHhc----CCCCc
Confidence 1111222222 122 111 2234444332 3 56778999999999999999887655433 33446
Q ss_pred EEEECCCC-cccCCcccHHHHHHHHHHHHHHHh
Q 004816 680 LVEYEGEQ-HGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 680 ~~~~~~~g-H~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
...++... |. .....+..+.+||++.|
T Consensus 383 ~~~~~~~~~~~-----gy~~al~~~~~Wl~~~l 410 (411)
T PF06500_consen 383 ALRIPSKPLHM-----GYPQALDEIYKWLEDKL 410 (411)
T ss_dssp EEEE-SSSHHH-----HHHHHHHHHHHHHHHHH
T ss_pred eeecCCCcccc-----chHHHHHHHHHHHHHhc
Confidence 66776544 53 34588889999999875
No 61
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.67 E-value=1.2e-15 Score=140.13 Aligned_cols=145 Identities=26% Similarity=0.322 Sum_probs=112.3
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcE
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRL 573 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 573 (729)
+||++||.... ...+..+++.|+++||.|+.+|+++.+.... ..++..+++++.+... +.++|
T Consensus 1 ~vv~~HG~~~~--~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~i 63 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQPLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAGYP-DPDRI 63 (145)
T ss_dssp EEEEECTTTTT--THHHHHHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHHHC-TCCEE
T ss_pred CEEEECCCCCC--HHHHHHHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhhcC-CCCcE
Confidence 58999998443 4457788999999999999999997665311 2356666666543222 78999
Q ss_pred EEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEe
Q 004816 574 CITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQG 653 (729)
Q Consensus 574 ~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G 653 (729)
+++|||+||.+++.++...++++++|+.+|..+ ...+.+.+.|+|+++|
T Consensus 64 ~l~G~S~Gg~~a~~~~~~~~~v~~~v~~~~~~~-------------------------------~~~~~~~~~pv~~i~g 112 (145)
T PF12695_consen 64 ILIGHSMGGAIAANLAARNPRVKAVVLLSPYPD-------------------------------SEDLAKIRIPVLFIHG 112 (145)
T ss_dssp EEEEETHHHHHHHHHHHHSTTESEEEEESESSG-------------------------------CHHHTTTTSEEEEEEE
T ss_pred EEEEEccCcHHHHHHhhhccceeEEEEecCccc-------------------------------hhhhhccCCcEEEEEE
Confidence 999999999999999983389999999999311 0113355679999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 654 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 654 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
++|..+++++..+++++++ .+.+++++++++|+
T Consensus 113 ~~D~~~~~~~~~~~~~~~~---~~~~~~~i~g~~H~ 145 (145)
T PF12695_consen 113 ENDPLVPPEQVRRLYEALP---GPKELYIIPGAGHF 145 (145)
T ss_dssp TT-SSSHHHHHHHHHHHHC---SSEEEEEETTS-TT
T ss_pred CCCCcCCHHHHHHHHHHcC---CCcEEEEeCCCcCc
Confidence 9999999999999999988 47899999999995
No 62
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.67 E-value=4.7e-16 Score=158.64 Aligned_cols=209 Identities=22% Similarity=0.276 Sum_probs=140.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcccc--c------hhhhHHHhhCCcEEEEecCCCCCCCchhH
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGI--L------NLSIQYWTSRGWAFVDVNYGGSTGYGREF 539 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~--~------~~~~~~la~~G~~v~~~d~rGs~g~g~~~ 539 (729)
||.+|.+.+|.| +.. ..++.|+||..|+......... . ......|+++||+|+..|.||.++++..+
T Consensus 1 DGv~L~adv~~P-~~~----~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~ 75 (272)
T PF02129_consen 1 DGVRLAADVYRP-GAD----GGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEF 75 (272)
T ss_dssp TS-EEEEEEEEE---T----TSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B
T ss_pred CCCEEEEEEEec-CCC----CCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcc
Confidence 789999999999 211 2678999999998742210110 0 01123499999999999999988877665
Q ss_pred HHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH-Hhh-hc--
Q 004816 540 RERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM-LRA-ET-- 614 (729)
Q Consensus 540 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~-~~~-~~-- 614 (729)
... ...+.+|..++|+|+.+++..+ .||+++|.|++|++++.++. .|+.++|++...+..|+.. ... ..
T Consensus 76 ~~~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~gG~~ 149 (272)
T PF02129_consen 76 DPM-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPGGAF 149 (272)
T ss_dssp -TT-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEETTEE
T ss_pred ccC-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcCCcc
Confidence 432 4467899999999999997655 79999999999999999998 8999999999888766543 100 00
Q ss_pred -c----hh---------------------h---------hh----------hhhhhc---CChhhhhhcCcccccCCCCC
Q 004816 615 -H----KF---------------------E---------SR----------YIDNLV---GSEKDYYEKSPINFVDKFSC 646 (729)
Q Consensus 615 -~----~~---------------------~---------~~----------~~~~~~---~~~~~~~~~sp~~~~~~i~~ 646 (729)
. .+ . .. +..... ...+.+.+.++..++.++++
T Consensus 150 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~i~v 229 (272)
T PF02129_consen 150 RLGFFAGWEDLQSQQEDPQSRPAPDRDYLRERARYEALGDSPLGRLPRDPPYWDEWLDHPPYDPFWQERSPSERLDKIDV 229 (272)
T ss_dssp BCCHHHHHHHHHHHHHHHTCCCCSSSHHHHHHHHHHCHHHHHHHHCHGGTHHHHHHHHT-SSSHHHHTTBHHHHHGG--S
T ss_pred cccchhHHHHHHHHhhcccCCCchhhhhhhhhhhhhhhhhHHHhhhccccHHHHHHHhCCCcCHHHHhCChHHHHhhCCC
Confidence 0 00 0 00 000000 01233445555566789999
Q ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHhCC-CCEEEEEECCCCcc
Q 004816 647 PIILFQGLEDKVVPPDQARKIYKALKENG-LPVALVEYEGEQHG 689 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~~~~~~~l~~~g-~~~~~~~~~~~gH~ 689 (729)
|+|+++|..|.... ..+.+.+++|+..+ .+.++++-|. +|+
T Consensus 230 P~l~v~Gw~D~~~~-~~~~~~~~~l~~~~~~~~~Liigpw-~H~ 271 (272)
T PF02129_consen 230 PVLIVGGWYDTLFL-RGALRAYEALRAPGSKPQRLIIGPW-THG 271 (272)
T ss_dssp EEEEEEETTCSSTS-HHHHHHHHHHCTTSTC-EEEEEESE-STT
T ss_pred CEEEecccCCcccc-hHHHHHHHHhhcCCCCCCEEEEeCC-CCC
Confidence 99999999997666 89999999999988 6778888875 574
No 63
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.66 E-value=7.3e-15 Score=149.96 Aligned_cols=231 Identities=12% Similarity=0.114 Sum_probs=145.4
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc--ccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR--GILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~--~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
+.+.+.. +|..+.+++..|.+ . +.+.||++|||+..... ..+...++.|+++||.|+++|+||.|.+.
T Consensus 3 ~~~~~~~--~~~~l~g~~~~p~~-------~-~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~G~~v~~~Dl~G~G~S~ 72 (274)
T TIGR03100 3 RALTFSC--EGETLVGVLHIPGA-------S-HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEAGFPVLRFDYRGMGDSE 72 (274)
T ss_pred eeEEEEc--CCcEEEEEEEcCCC-------C-CCCeEEEEeCCccccCCchhHHHHHHHHHHHCCCEEEEeCCCCCCCCC
Confidence 3566766 68889999999865 1 23567777877543222 22445678899999999999999866532
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhH-----Hh
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSM-----LR 611 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~-----~~ 611 (729)
... ..+ ....+|+.++++++.++.. ..++|+++|||+||++++.++.++++++++|+.+|...... ..
T Consensus 73 ~~~-----~~~-~~~~~d~~~~~~~l~~~~~-g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~~p~~~~~~~~~~~~~ 145 (274)
T TIGR03100 73 GEN-----LGF-EGIDADIAAAIDAFREAAP-HLRRIVAWGLCDAASAALLYAPADLRVAGLVLLNPWVRTEAAQAASRI 145 (274)
T ss_pred CCC-----CCH-HHHHHHHHHHHHHHHhhCC-CCCcEEEEEECHHHHHHHHHhhhCCCccEEEEECCccCCcccchHHHH
Confidence 210 111 1226889999999987521 23679999999999999998876678999999998743211 00
Q ss_pred hhc---chhhhhhhhhhc-CC------hhhhhh----c---C-----------cccccCCCCCCEEEEEeCCCCCCChHH
Q 004816 612 AET---HKFESRYIDNLV-GS------EKDYYE----K---S-----------PINFVDKFSCPIILFQGLEDKVVPPDQ 663 (729)
Q Consensus 612 ~~~---~~~~~~~~~~~~-~~------~~~~~~----~---s-----------p~~~~~~i~~PvL~i~G~~D~~vp~~~ 663 (729)
... ......++...+ |. ...+.. . . -...+..+++|+|+++|..|...+...
T Consensus 146 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~P~ll~~g~~D~~~~~~~ 225 (274)
T TIGR03100 146 RHYYLGQLLSADFWRKLLSGEVNLGSSLRGLGDALLKARQKGDEVAHGGLAERMKAGLERFQGPVLFILSGNDLTAQEFA 225 (274)
T ss_pred HHHHHHHHhChHHHHHhcCCCccHHHHHHHHHHHHHhhhhcCCCcccchHHHHHHHHHHhcCCcEEEEEcCcchhHHHHH
Confidence 000 000001111110 10 000000 0 0 012244678999999999998742111
Q ss_pred -----HHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 664 -----ARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 664 -----~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+.++.+.+.. ..++++++++++|.+.......+..+.+.+||+
T Consensus 226 ~~~~~~~~~~~~l~~--~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~ 273 (274)
T TIGR03100 226 DSVLGEPAWRGALED--PGIERVEIDGADHTFSDRVWREWVAARTTEWLR 273 (274)
T ss_pred HHhccChhhHHHhhc--CCeEEEecCCCCcccccHHHHHHHHHHHHHHHh
Confidence 0222222332 357899999999987777777899999999986
No 64
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.66 E-value=2.7e-15 Score=152.03 Aligned_cols=202 Identities=14% Similarity=0.159 Sum_probs=127.9
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
.+.|+||++||.+++. ..|...+..|. +||.|+++|+||.|.+.... ... ...+|....+..+++. ++
T Consensus 11 ~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~----~~~---~~~~~~~~~~~~~i~~--~~ 78 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSG--SYWAPQLDVLT-QRFHVVTYDHRGTGRSPGEL----PPG---YSIAHMADDVLQLLDA--LN 78 (257)
T ss_pred CCCCEEEEEcCCCcch--hHHHHHHHHHH-hccEEEEEcCCCCCCCCCCC----ccc---CCHHHHHHHHHHHHHH--hC
Confidence 3468899999985433 34555555554 57999999999877654321 111 1234443333333332 24
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh-----------hc--chh---------hhhhhhhh-
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-----------ET--HKF---------ESRYIDNL- 625 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~-----------~~--~~~---------~~~~~~~~- 625 (729)
.+++.++|||+||++++.++. +|++++++|+.++......... .. ..+ ...++...
T Consensus 79 ~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T TIGR03611 79 IERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSRPDPHTRRCFDVRIALLQHAGPEAYVHAQALFLYPADWISENA 158 (257)
T ss_pred CCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCCCChhHHHHHHHHHHHHhccCcchhhhhhhhhhccccHhhccc
Confidence 578999999999999999988 8889999998887543211000 00 000 00000000
Q ss_pred ----------cC---Ch-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 626 ----------VG---SE-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 626 ----------~~---~~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
.. .. ..+...+....++++++|+|+++|++|..+|+++++++++.+. ..+++.+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~l~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~ 234 (257)
T TIGR03611 159 ARLAADEAHALAHFPGKANVLRRINALEAFDVSARLDRIQHPVLLIANRDDMLVPYTQSLRLAAALP----NAQLKLLPY 234 (257)
T ss_pred hhhhhhhhhcccccCccHHHHHHHHHHHcCCcHHHhcccCccEEEEecCcCcccCHHHHHHHHHhcC----CceEEEECC
Confidence 00 00 0011122334567889999999999999999999988887764 347889999
Q ss_pred CCcccCCcccHHHHHHHHHHHHH
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+||.+.. ++..++.+.+.+|++
T Consensus 235 ~gH~~~~-~~~~~~~~~i~~fl~ 256 (257)
T TIGR03611 235 GGHASNV-TDPETFNRALLDFLK 256 (257)
T ss_pred CCCCccc-cCHHHHHHHHHHHhc
Confidence 9998643 566778888888875
No 65
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.65 E-value=1.8e-15 Score=155.93 Aligned_cols=202 Identities=14% Similarity=0.125 Sum_probs=126.5
Q ss_pred CEEEEEcCCCCCCcccc-chhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGI-LNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~-~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.||++||.+.....+. +...+..+++.||.|+++|+||.|.+.... ..........+|+.++++.+ +.+
T Consensus 31 ~~ivllHG~~~~~~~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~---~~~~~~~~~~~~l~~~l~~l------~~~ 101 (282)
T TIGR03343 31 EAVIMLHGGGPGAGGWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVV---MDEQRGLVNARAVKGLMDAL------DIE 101 (282)
T ss_pred CeEEEECCCCCchhhHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCc---CcccccchhHHHHHHHHHHc------CCC
Confidence 57999999754433221 112345567789999999999865543211 00011112245555555554 457
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------------HHhhhc-ch---hhhhhhhh----------
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------------MLRAET-HK---FESRYIDN---------- 624 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------------~~~~~~-~~---~~~~~~~~---------- 624 (729)
++.++||||||++++.++. +|++++++|+.++..... .+.... .. ....+...
T Consensus 102 ~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (282)
T TIGR03343 102 KAHLVGNSMGGATALNFALEYPDRIGKLILMGPGGLGPSLFAPMPMEGIKLLFKLYAEPSYETLKQMLNVFLFDQSLITE 181 (282)
T ss_pred CeeEEEECchHHHHHHHHHhChHhhceEEEECCCCCCccccccCchHHHHHHHHHhcCCCHHHHHHHHhhCccCcccCcH
Confidence 9999999999999999998 999999999987642100 000000 00 00000000
Q ss_pred ---------hcCChh---hhh---------hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 625 ---------LVGSEK---DYY---------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 625 ---------~~~~~~---~~~---------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
....+. .+. ..+....+.++++|+|+++|++|..++++.+.++++.++ +++++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlli~G~~D~~v~~~~~~~~~~~~~----~~~~~~i 257 (282)
T TIGR03343 182 ELLQGRWENIQRQPEHLKNFLISSQKAPLSTWDVTARLGEIKAKTLVTWGRDDRFVPLDHGLKLLWNMP----DAQLHVF 257 (282)
T ss_pred HHHHhHHHHhhcCHHHHHHHHHhccccccccchHHHHHhhCCCCEEEEEccCCCcCCchhHHHHHHhCC----CCEEEEe
Confidence 000000 000 011122356889999999999999999988888877765 5689999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHH
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+++||.. ..+....+.+.+.+|+.
T Consensus 258 ~~agH~~-~~e~p~~~~~~i~~fl~ 281 (282)
T TIGR03343 258 SRCGHWA-QWEHADAFNRLVIDFLR 281 (282)
T ss_pred CCCCcCC-cccCHHHHHHHHHHHhh
Confidence 9999975 44666788888888885
No 66
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.65 E-value=2.6e-15 Score=134.82 Aligned_cols=178 Identities=19% Similarity=0.258 Sum_probs=131.1
Q ss_pred CCCCCEEEEEcCCC---CCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC
Q 004816 489 EEKPPLLVKSHGGP---TSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565 (729)
Q Consensus 489 ~~~~P~vv~~hGg~---~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 565 (729)
.+..|+.|++|.-| +.+.+......+..|.++||+++.+||||-|++..+|. .|..+.+|+.++++|+.++
T Consensus 25 ~~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~G~atlRfNfRgVG~S~G~fD------~GiGE~~Da~aaldW~~~~ 98 (210)
T COG2945 25 TPAAPIALICHPHPLFGGTMNNKVVQTLARALVKRGFATLRFNFRGVGRSQGEFD------NGIGELEDAAAALDWLQAR 98 (210)
T ss_pred CCCCceEEecCCCccccCccCCHHHHHHHHHHHhCCceEEeecccccccccCccc------CCcchHHHHHHHHHHHHhh
Confidence 35678999988754 23444444557788899999999999999887666553 3556799999999999998
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS 645 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~ 645 (729)
.. +..-..+.|+|+|+++++.++.+-+.....++..|..+...+ .++....
T Consensus 99 hp-~s~~~~l~GfSFGa~Ia~~la~r~~e~~~~is~~p~~~~~df----------------------------s~l~P~P 149 (210)
T COG2945 99 HP-DSASCWLAGFSFGAYIAMQLAMRRPEILVFISILPPINAYDF----------------------------SFLAPCP 149 (210)
T ss_pred CC-CchhhhhcccchHHHHHHHHHHhcccccceeeccCCCCchhh----------------------------hhccCCC
Confidence 43 223347899999999999999833335666777776552111 1244556
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+|.|+++|+.|.++++....++++. .+.+++++++++|.|.. ......+.+.+|+.
T Consensus 150 ~~~lvi~g~~Ddvv~l~~~l~~~~~-----~~~~~i~i~~a~HFF~g--Kl~~l~~~i~~~l~ 205 (210)
T COG2945 150 SPGLVIQGDADDVVDLVAVLKWQES-----IKITVITIPGADHFFHG--KLIELRDTIADFLE 205 (210)
T ss_pred CCceeEecChhhhhcHHHHHHhhcC-----CCCceEEecCCCceecc--cHHHHHHHHHHHhh
Confidence 8999999999999988777777655 46789999999998864 33456667777774
No 67
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.64 E-value=4.9e-15 Score=155.26 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=143.8
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc--------------------c---c-hhhhHHHh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--------------------I---L-NLSIQYWT 518 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~--------------------~---~-~~~~~~la 518 (729)
+... +|..|....|.|.+ +..+|+++||........ . | ..+++.|.
T Consensus 2 ~~~~-~g~~l~~~~~~~~~---------~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~ 71 (332)
T TIGR01607 2 FRNK-DGLLLKTYSWIVKN---------AIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFN 71 (332)
T ss_pred ccCC-CCCeEEEeeeeccC---------CeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHH
Confidence 3445 88899988888743 246999999964333211 1 1 35688999
Q ss_pred hCCcEEEEecCCCCCCCchh-HHHhhccCCCcccHHHHHHHHHHHHhC------------------CCCCCCcEEEEEcC
Q 004816 519 SRGWAFVDVNYGGSTGYGRE-FRERLLGRWGIVDVNDCCSCATFLVGS------------------GKADEKRLCITGGS 579 (729)
Q Consensus 519 ~~G~~v~~~d~rGs~g~g~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~ri~i~G~S 579 (729)
++||.|+++|+||.|..... ........| ..-++|+...++.+.+. ..-...+++|+|||
T Consensus 72 ~~G~~V~~~D~rGHG~S~~~~~~~g~~~~~-~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhS 150 (332)
T TIGR01607 72 KNGYSVYGLDLQGHGESDGLQNLRGHINCF-DDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLS 150 (332)
T ss_pred HCCCcEEEecccccCCCccccccccchhhH-HHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeecc
Confidence 99999999999987654321 100000111 11257777777776541 11113579999999
Q ss_pred hHHHHHHHHHh-CCC--------cceEEEEeccccChhHH---------------hhhcchhhhhhh-hh---hcCCh--
Q 004816 580 AGGYTTLAALA-FRD--------TFKAGASLYGVADLSML---------------RAETHKFESRYI-DN---LVGSE-- 629 (729)
Q Consensus 580 ~GG~~a~~~~~-~~~--------~~~a~v~~~~~~d~~~~---------------~~~~~~~~~~~~-~~---~~~~~-- 629 (729)
|||.+++.++. ++. .++++|+.+|...+... ......+..... .. ...++
T Consensus 151 mGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~ 230 (332)
T TIGR01607 151 MGGNIALRLLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISKKIRYEKSPYV 230 (332)
T ss_pred CccHHHHHHHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccCccccccChhh
Confidence 99999998875 332 58899988876432110 000000000000 00 00000
Q ss_pred hhhhhcCcc----------------------cccCCC--CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 630 KDYYEKSPI----------------------NFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 630 ~~~~~~sp~----------------------~~~~~i--~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
......+|+ ..+.++ ++|+|++||++|.+++++.+.++++.+... +++++++++
T Consensus 231 ~~~~~~Dp~~~~~~~s~~~~~~l~~~~~~~~~~~~~i~~~~P~Lii~G~~D~vv~~~~~~~~~~~~~~~--~~~l~~~~g 308 (332)
T TIGR01607 231 NDIIKFDKFRYDGGITFNLASELIKATDTLDCDIDYIPKDIPILFIHSKGDCVCSYEGTVSFYNKLSIS--NKELHTLED 308 (332)
T ss_pred hhHHhcCccccCCcccHHHHHHHHHHHHHHHhhHhhCCCCCCEEEEEeCCCCccCHHHHHHHHHhccCC--CcEEEEECC
Confidence 000001111 123445 689999999999999999999888776542 468899999
Q ss_pred CCcccCCcccHHHHHHHHHHHHH
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++|.+.......+.++.+.+|+.
T Consensus 309 ~~H~i~~E~~~~~v~~~i~~wL~ 331 (332)
T TIGR01607 309 MDHVITIEPGNEEVLKKIIEWIS 331 (332)
T ss_pred CCCCCccCCCHHHHHHHHHHHhh
Confidence 99998776667889999999985
No 68
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=99.64 E-value=1.5e-15 Score=149.21 Aligned_cols=183 Identities=22% Similarity=0.266 Sum_probs=123.0
Q ss_pred EEEEcCCCCCCcccc-chhhhHHHhh-CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC---CCCC
Q 004816 495 LVKSHGGPTSEARGI-LNLSIQYWTS-RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS---GKAD 569 (729)
Q Consensus 495 vv~~hGg~~~~~~~~-~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d 569 (729)
||++|||.+...... .......+++ .|+.|+.+|||-++... ....++|+.++++|+.++ ..+|
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~~~-----------~p~~~~D~~~a~~~l~~~~~~~~~d 69 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPEAP-----------FPAALEDVKAAYRWLLKNADKLGID 69 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTTSS-----------TTHHHHHHHHHHHHHHHTHHHHTEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccccc-----------ccccccccccceeeecccccccccc
Confidence 789999987654443 3345566665 89999999999654321 124489999999999998 4578
Q ss_pred CCcEEEEEcChHHHHHHHHHh---C--CCcceEEEEeccccCh-h----HHhhh---cc--hhhhh----hhhhhcC-Ch
Q 004816 570 EKRLCITGGSAGGYTTLAALA---F--RDTFKAGASLYGVADL-S----MLRAE---TH--KFESR----YIDNLVG-SE 629 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~---~--~~~~~a~v~~~~~~d~-~----~~~~~---~~--~~~~~----~~~~~~~-~~ 629 (729)
+++|+|+|+|.||.+++.++. . ...++++++.+|+.|+ . .+... .. .+... +.....+ ..
T Consensus 70 ~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (211)
T PF07859_consen 70 PERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDLQDFDGPSYDDSNENKDDPFLPAPKIDWFWKLYLPGSD 149 (211)
T ss_dssp EEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSSTSTSSCHHHHHHHHHSTTSSSBHHHHHHHHHHHHSTGG
T ss_pred ccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccchhccccccccccccccccccccccccccccccccccc
Confidence 999999999999999998885 2 2358999999999877 1 11100 00 00000 0111111 11
Q ss_pred hhhhhcCcccccCCC--CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC
Q 004816 630 KDYYEKSPINFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR 691 (729)
Q Consensus 630 ~~~~~~sp~~~~~~i--~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~ 691 (729)
......+|+.. ..+ -+|+++++|+.|..+ .++..++++|++.|++++++++++..|.|.
T Consensus 150 ~~~~~~sp~~~-~~~~~~Pp~~i~~g~~D~l~--~~~~~~~~~L~~~gv~v~~~~~~g~~H~f~ 210 (211)
T PF07859_consen 150 RDDPLASPLNA-SDLKGLPPTLIIHGEDDVLV--DDSLRFAEKLKKAGVDVELHVYPGMPHGFF 210 (211)
T ss_dssp TTSTTTSGGGS-SCCTTCHEEEEEEETTSTTH--HHHHHHHHHHHHTT-EEEEEEETTEETTGG
T ss_pred ccccccccccc-cccccCCCeeeeccccccch--HHHHHHHHHHHHCCCCEEEEEECCCeEEee
Confidence 12234566655 223 258999999999764 789999999999999999999999999873
No 69
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.63 E-value=1.7e-14 Score=141.57 Aligned_cols=233 Identities=20% Similarity=0.221 Sum_probs=152.0
Q ss_pred EeeccCCCeEE-EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 462 EFPTEVPGQKA-YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 462 ~~~~~~dG~~l-~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
.+..+ ||..+ ..|...|. ..+.|+||.+||--++...+....++..+.++||.|+++|.||.++.-..
T Consensus 53 ~v~~p-dg~~~~ldw~~~p~--------~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~-- 121 (345)
T COG0429 53 RLETP-DGGFIDLDWSEDPR--------AAKKPLVVLFHGLEGSSNSPYARGLMRALSRRGWLVVVFHFRGCSGEANT-- 121 (345)
T ss_pred EEEcC-CCCEEEEeeccCcc--------ccCCceEEEEeccCCCCcCHHHHHHHHHHHhcCCeEEEEecccccCCccc--
Confidence 44454 55554 44444443 34569999999976676667666788889999999999999998764321
Q ss_pred HhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHH-HHHHHHHh--CCCcceEEEEeccccChhHHhhhcch-
Q 004816 541 ERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG-YTTLAALA--FRDTFKAGASLYGVADLSMLRAETHK- 616 (729)
Q Consensus 541 ~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG-~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~- 616 (729)
.... +.....+|+..+++++.+... +.++.++|.|+|| +++.+++. ....+.+++..+...|+.........
T Consensus 122 ~p~~--yh~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~~~~~~l~~~ 197 (345)
T COG0429 122 SPRL--YHSGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLEACAYRLDSG 197 (345)
T ss_pred Ccce--ecccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHHHHHHHhcCc
Confidence 1111 112236999999999998643 5799999999999 66666665 33456777766655554321110000
Q ss_pred ----hhhh---------------------------hhh---------h-----hcC--C-hhhhhhcCcccccCCCCCCE
Q 004816 617 ----FESR---------------------------YID---------N-----LVG--S-EKDYYEKSPINFVDKFSCPI 648 (729)
Q Consensus 617 ----~~~~---------------------------~~~---------~-----~~~--~-~~~~~~~sp~~~~~~i~~Pv 648 (729)
+-.+ .+. . ..| + .+.|+..|.+..+.+|++|+
T Consensus 198 ~s~~ly~r~l~~~L~~~~~~kl~~l~~~~p~~~~~~ik~~~ti~eFD~~~Tap~~Gf~da~dYYr~aSs~~~L~~Ir~Pt 277 (345)
T COG0429 198 FSLRLYSRYLLRNLKRNAARKLKELEPSLPGTVLAAIKRCRTIREFDDLLTAPLHGFADAEDYYRQASSLPLLPKIRKPT 277 (345)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhcCcccCcHHHHHHHhhchHHhccceeeecccCCCcHHHHHHhccccccccccccce
Confidence 0000 000 0 001 2 35677889999999999999
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc-cCC-cc-cH-HHHHHHHHHHHHHHhC
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRK-AE-NI-KFTLEQQMVFFARVVG 712 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~-~~-~~-~~~~~~~~~fl~~~l~ 712 (729)
||||..+|++++++.--+.... .+..+.+..-+-+||. |.. .. +. .-..+++.+||+..+.
T Consensus 278 Lii~A~DDP~~~~~~iP~~~~~---~np~v~l~~t~~GGHvGfl~~~~~~~~~W~~~ri~~~l~~~~~ 342 (345)
T COG0429 278 LIINAKDDPFMPPEVIPKLQEM---LNPNVLLQLTEHGGHVGFLGGKLLHPQMWLEQRILDWLDPFLE 342 (345)
T ss_pred EEEecCCCCCCChhhCCcchhc---CCCceEEEeecCCceEEeccCccccchhhHHHHHHHHHHHHHh
Confidence 9999999999988543333222 4557899999999995 322 21 11 2455678999988764
No 70
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.62 E-value=3.2e-14 Score=148.10 Aligned_cols=206 Identities=12% Similarity=0.070 Sum_probs=126.8
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||.+. ....|...+..|.++||.|+++|+||.|.+.... .. .....++....+..++++ ++.+
T Consensus 46 ~~~lvliHG~~~--~~~~w~~~~~~L~~~gy~vi~~Dl~G~G~S~~~~---~~---~~~~~~~~a~~l~~~l~~--l~~~ 115 (302)
T PRK00870 46 GPPVLLLHGEPS--WSYLYRKMIPILAAAGHRVIAPDLIGFGRSDKPT---RR---EDYTYARHVEWMRSWFEQ--LDLT 115 (302)
T ss_pred CCEEEEECCCCC--chhhHHHHHHHHHhCCCEEEEECCCCCCCCCCCC---Cc---ccCCHHHHHHHHHHHHHH--cCCC
Confidence 468999999743 3445677788888889999999999766432210 00 112234444444444443 2346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------HH--hhhc----c--------------hhhhhhhhh
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------ML--RAET----H--------------KFESRYIDN 624 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------~~--~~~~----~--------------~~~~~~~~~ 624 (729)
++.++|||+||.+++.++. +|++++++|+.++..... .+ +... . .........
T Consensus 116 ~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (302)
T PRK00870 116 DVTLVCQDWGGLIGLRLAAEHPDRFARLVVANTGLPTGDGPMPDAFWAWRAFSQYSPVLPVGRLVNGGTVRDLSDAVRAA 195 (302)
T ss_pred CEEEEEEChHHHHHHHHHHhChhheeEEEEeCCCCCCccccchHHHhhhhcccccCchhhHHHHhhccccccCCHHHHHH
Confidence 8999999999999999998 999999999887632100 00 0000 0 000000000
Q ss_pred h---cCCh------hhhhh---cCc-----------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 625 L---VGSE------KDYYE---KSP-----------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 625 ~---~~~~------~~~~~---~sp-----------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
. .... ..+.. ..+ ...+.++++|+|+++|++|.++|... .++.+.+... ..+.++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~-~~~~~~~~~~-~~~~~~ 273 (302)
T PRK00870 196 YDAPFPDESYKAGARAFPLLVPTSPDDPAVAANRAAWAVLERWDKPFLTAFSDSDPITGGGD-AILQKRIPGA-AGQPHP 273 (302)
T ss_pred hhcccCChhhhcchhhhhhcCCCCCCCcchHHHHHHHHhhhcCCCceEEEecCCCCcccCch-HHHHhhcccc-ccccee
Confidence 0 0000 00000 000 12356789999999999999999765 6676666532 123578
Q ss_pred EECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 682 EYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 682 ~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++++||... .+....+.+.+.+|+.++
T Consensus 274 ~i~~~gH~~~-~e~p~~~~~~l~~fl~~~ 301 (302)
T PRK00870 274 TIKGAGHFLQ-EDSGEELAEAVLEFIRAT 301 (302)
T ss_pred eecCCCccch-hhChHHHHHHHHHHHhcC
Confidence 9999999753 466678888999998764
No 71
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.61 E-value=1.2e-14 Score=142.95 Aligned_cols=189 Identities=21% Similarity=0.215 Sum_probs=112.6
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhH-HHhhCCcEEEEecCCC-----CCCC-chhHHHhhccCCC-cccHHHH-----
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQ-YWTSRGWAFVDVNYGG-----STGY-GREFRERLLGRWG-IVDVNDC----- 555 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~-~la~~G~~v~~~d~rG-----s~g~-g~~~~~~~~~~~~-~~~~~D~----- 555 (729)
++..|+||++||.+... ..+..... .+......++.++-+- .+|+ ...|.+....... ..+.+++
T Consensus 11 ~~~~~lvi~LHG~G~~~--~~~~~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 11 GKAKPLVILLHGYGDSE--DLFALLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp ST-SEEEEEE--TTS-H--HHHHHHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCCceEEEEECCCCCCc--chhHHHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 45679999999973333 22222222 2233467777775331 1121 1245432211111 1122333
Q ss_pred --HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhh
Q 004816 556 --CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDY 632 (729)
Q Consensus 556 --~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (729)
...++...+. .++++||++.|+|.||.+++.++. +|..+.++|+++|.........
T Consensus 89 ~l~~li~~~~~~-~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~~~~~-------------------- 147 (216)
T PF02230_consen 89 RLDELIDEEVAY-GIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPESELE-------------------- 147 (216)
T ss_dssp HHHHHHHHHHHT-T--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTGCCCH--------------------
T ss_pred HHHHHHHHHHHc-CCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccccccc--------------------
Confidence 3334444444 489999999999999999999998 9999999999999653221000
Q ss_pred hhcCcccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 633 YEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 633 ~~~sp~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
...... ++|++++||.+|+++|.+.+++.++.|++.+.+++++.|++.||.+. .+.++.+.+|+.+++
T Consensus 148 ------~~~~~~~~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~-----~~~~~~~~~~l~~~~ 216 (216)
T PF02230_consen 148 ------DRPEALAKTPILIIHGDEDPVVPFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS-----PEELRDLREFLEKHI 216 (216)
T ss_dssp ------CCHCCCCTS-EEEEEETT-SSSTHHHHHHHHHHHHCTT-GEEEEEETT-SSS-------HHHHHHHHHHHHHH-
T ss_pred ------ccccccCCCcEEEEecCCCCcccHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC-----HHHHHHHHHHHhhhC
Confidence 000111 68999999999999999999999999999999999999999999865 467788899998874
No 72
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.60 E-value=4.3e-14 Score=146.61 Aligned_cols=207 Identities=12% Similarity=0.057 Sum_probs=128.1
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+. ..|...+..|+.+ |.|+++|+||.|.+...-....... .....+|+...+..+++.. ..++
T Consensus 30 ~~vlllHG~~~~~--~~w~~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~~~~~-~~~~~~~~a~~l~~~l~~l--~~~~ 103 (294)
T PLN02824 30 PALVLVHGFGGNA--DHWRKNTPVLAKS-HRVYAIDLLGYGYSDKPNPRSAPPN-SFYTFETWGEQLNDFCSDV--VGDP 103 (294)
T ss_pred CeEEEECCCCCCh--hHHHHHHHHHHhC-CeEEEEcCCCCCCCCCCcccccccc-ccCCHHHHHHHHHHHHHHh--cCCC
Confidence 6799999985543 4567777888776 6999999998765443210000000 1123455444444444332 2378
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh----------hHH----hhhc--chhhh-------------hhh
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----------SML----RAET--HKFES-------------RYI 622 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~----------~~~----~~~~--~~~~~-------------~~~ 622 (729)
+.++|||+||.+++.++. +|++++++|+.++.... ..+ .... ..... ..+
T Consensus 104 ~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (294)
T PLN02824 104 AFVICNSVGGVVGLQAAVDAPELVRGVMLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNIL 183 (294)
T ss_pred eEEEEeCHHHHHHHHHHHhChhheeEEEEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHH
Confidence 999999999999999998 99999999998864310 000 0000 00000 000
Q ss_pred hhhcC-----Ch----------------hhhhh---c----CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 623 DNLVG-----SE----------------KDYYE---K----SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 623 ~~~~~-----~~----------------~~~~~---~----sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
..... +. ..+.. . .....+.++++|+|+++|++|..+|.+.++.+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D~~~~~~~~~~~~~~~--- 260 (294)
T PLN02824 184 CQCYHDDSAVTDELVEAILRPGLEPGAVDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKDPWEPVELGRAYANFD--- 260 (294)
T ss_pred HHhccChhhccHHHHHHHHhccCCchHHHHHHHHhccccccchHHHHhhcCCCeEEEEecCCCCCChHHHHHHHhcC---
Confidence 00000 00 00000 0 011336678999999999999999998777654432
Q ss_pred CCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 675 GLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 675 g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
...++++++++||... .+...++.+.+.+|+.++
T Consensus 261 -~~~~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~~ 294 (294)
T PLN02824 261 -AVEDFIVLPGVGHCPQ-DEAPELVNPLIESFVARH 294 (294)
T ss_pred -CccceEEeCCCCCChh-hhCHHHHHHHHHHHHhcC
Confidence 2358999999999654 467788889999998764
No 73
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.60 E-value=5.7e-14 Score=143.23 Aligned_cols=226 Identities=19% Similarity=0.220 Sum_probs=154.5
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc---cccchhhhHHH-hhCCcEEEEecCCCCCCCchhHHHhh
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA---RGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERL 543 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~---~~~~~~~~~~l-a~~G~~v~~~d~rGs~g~g~~~~~~~ 543 (729)
....+...+|.|.... +..+.|+||++|||++... ...|......+ .+.+..|+.+|||-.+.+-
T Consensus 70 ~~~~l~vRly~P~~~~----~~~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPEh~------- 138 (336)
T KOG1515|consen 70 PFTNLPVRLYRPTSSS----SETKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPEHP------- 138 (336)
T ss_pred CCCCeEEEEEcCCCCC----cccCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCCCC-------
Confidence 3456888899997732 2267899999999987544 34455555555 4569999999999766422
Q ss_pred ccCCCcccHHHHHHHHHHHHhC----CCCCCCcEEEEEcChHHHHHHHHHh-----C--CCcceEEEEeccccChhHHhh
Q 004816 544 LGRWGIVDVNDCCSCATFLVGS----GKADEKRLCITGGSAGGYTTLAALA-----F--RDTFKAGASLYGVADLSMLRA 612 (729)
Q Consensus 544 ~~~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~~a~~~~~-----~--~~~~~a~v~~~~~~d~~~~~~ 612 (729)
-...++|...+++|+.++ ..+|++||+|+|-|.||.+|..++. . +.++++.|+++|++.......
T Consensus 139 ----~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~ 214 (336)
T KOG1515|consen 139 ----FPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTE 214 (336)
T ss_pred ----CCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCC
Confidence 124589999999999885 5689999999999999999977764 2 468999999999876543322
Q ss_pred hcch-------h-----hhhhhhhhcCChh---hhhhcCccc-----ccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHH
Q 004816 613 ETHK-------F-----ESRYIDNLVGSEK---DYYEKSPIN-----FVDKFS-CPIILFQGLEDKVVPPDQARKIYKAL 671 (729)
Q Consensus 613 ~~~~-------~-----~~~~~~~~~~~~~---~~~~~sp~~-----~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l 671 (729)
.... . ...++.....+.. .....+|.. ...-.. .|+|++.++.|... .++..++++|
T Consensus 215 ~e~~~~~~~~~~~~~~~~~~~w~~~lP~~~~~~~~p~~np~~~~~~~d~~~~~lp~tlv~~ag~D~L~--D~~~~Y~~~L 292 (336)
T KOG1515|consen 215 SEKQQNLNGSPELARPKIDKWWRLLLPNGKTDLDHPFINPVGNSLAKDLSGLGLPPTLVVVAGYDVLR--DEGLAYAEKL 292 (336)
T ss_pred HHHHHhhcCCcchhHHHHHHHHHHhCCCCCCCcCCccccccccccccCccccCCCceEEEEeCchhhh--hhhHHHHHHH
Confidence 1000 0 0001111110100 111122222 111222 56999999999765 8899999999
Q ss_pred HhCCCCEEEEEECCCCcccCC--c--ccHHHHHHHHHHHHHHH
Q 004816 672 KENGLPVALVEYEGEQHGFRK--A--ENIKFTLEQQMVFFARV 710 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~--~--~~~~~~~~~~~~fl~~~ 710 (729)
++.|++++++.++++.|+|.. + ....+.++.+.+|+.+.
T Consensus 293 kk~Gv~v~~~~~e~~~H~~~~~~~~~~~a~~~~~~i~~fi~~~ 335 (336)
T KOG1515|consen 293 KKAGVEVTLIHYEDGFHGFHILDPSSKEAHALMDAIVEFIKSN 335 (336)
T ss_pred HHcCCeEEEEEECCCeeEEEecCCchhhHHHHHHHHHHHHhhc
Confidence 999999999999999999632 2 34567777888887754
No 74
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.60 E-value=5.6e-14 Score=151.37 Aligned_cols=226 Identities=11% Similarity=0.097 Sum_probs=137.7
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-hhHHHh---hCCcEEEEecCCCCCCCc
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWT---SRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~la---~~G~~v~~~d~rGs~g~g 536 (729)
..+.+. .+.++++....|.+ ....|.||++||.+.+. ..|.. ....|+ .++|.|+++|+||.|.+.
T Consensus 178 ~~~~~~-~~~~l~~~~~gp~~-------~~~k~~VVLlHG~~~s~--~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~ 247 (481)
T PLN03087 178 TSWLSS-SNESLFVHVQQPKD-------NKAKEDVLFIHGFISSS--AFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSP 247 (481)
T ss_pred eeeEee-CCeEEEEEEecCCC-------CCCCCeEEEECCCCccH--HHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCc
Confidence 344444 57788888887765 22236799999985543 23332 223443 479999999999765443
Q ss_pred hhHHHhhccCCCcccHHHHHHHH-HHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------
Q 004816 537 REFRERLLGRWGIVDVNDCCSCA-TFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------ 608 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------ 608 (729)
... ... ...++....+ +.+++. .+.+++.++||||||++++.++. +|++++++|+.++.....
T Consensus 248 ~p~----~~~---ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~~~~~~~~~~~ 318 (481)
T PLN03087 248 KPA----DSL---YTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPPYYPVPKGVQA 318 (481)
T ss_pred CCC----CCc---CCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCCccccccchhH
Confidence 210 111 2244444444 234443 23468999999999999999988 999999999988643110
Q ss_pred -HHhh------hc-c-----h----hhh---h-----------hhhh---hcCC---hhhhh----hc--Cc--------
Q 004816 609 -MLRA------ET-H-----K----FES---R-----------YIDN---LVGS---EKDYY----EK--SP-------- 637 (729)
Q Consensus 609 -~~~~------~~-~-----~----~~~---~-----------~~~~---~~~~---~~~~~----~~--sp-------- 637 (729)
.... .. . . +.. . .... .... ...+. .. .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 398 (481)
T PLN03087 319 TQYVMRKVAPRRVWPPIAFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNI 398 (481)
T ss_pred HHHHHHHhcccccCCccccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHH
Confidence 0000 00 0 0 000 0 0000 0000 00000 00 00
Q ss_pred -----------c-cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHH
Q 004816 638 -----------I-NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 705 (729)
Q Consensus 638 -----------~-~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 705 (729)
+ ....+|++|+|+++|++|..+|++.++.+.+.+. .+++++++++||.....+....+.+.+.+
T Consensus 399 i~~~~~~l~~~l~~l~~~I~vPtLII~Ge~D~ivP~~~~~~la~~iP----~a~l~vI~~aGH~~~v~e~p~~fa~~L~~ 474 (481)
T PLN03087 399 ICGSGSKLDGYLDHVRDQLKCDVAIFHGGDDELIPVECSYAVKAKVP----RARVKVIDDKDHITIVVGRQKEFARELEE 474 (481)
T ss_pred HhchhhhhhhHHHHHHHhCCCCEEEEEECCCCCCCHHHHHHHHHhCC----CCEEEEeCCCCCcchhhcCHHHHHHHHHH
Confidence 0 0112689999999999999999999998887775 45899999999975433556778888888
Q ss_pred HHHH
Q 004816 706 FFAR 709 (729)
Q Consensus 706 fl~~ 709 (729)
|+..
T Consensus 475 F~~~ 478 (481)
T PLN03087 475 IWRR 478 (481)
T ss_pred Hhhc
Confidence 8754
No 75
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.60 E-value=3.5e-14 Score=145.77 Aligned_cols=216 Identities=15% Similarity=0.142 Sum_probs=134.4
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.+++++.... +...|.||++||.+.+. ..|......|.. +|.|+++|+||.|.+... . ..+
T Consensus 10 ~~~~~~~~~~~~---------~~~~~plvllHG~~~~~--~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~~---~--~~~ 72 (276)
T TIGR02240 10 DGQSIRTAVRPG---------KEGLTPLLIFNGIGANL--ELVFPFIEALDP-DLEVIAFDVPGVGGSSTP---R--HPY 72 (276)
T ss_pred CCcEEEEEEecC---------CCCCCcEEEEeCCCcch--HHHHHHHHHhcc-CceEEEECCCCCCCCCCC---C--CcC
Confidence 677887655421 11235689999974433 356666777654 699999999976654321 0 111
Q ss_pred Cc-ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------HH---hhhcch
Q 004816 548 GI-VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------ML---RAETHK 616 (729)
Q Consensus 548 ~~-~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------~~---~~~~~~ 616 (729)
.. ...+|+.++++++ +.+++.++|||+||.+++.++. +|++++++|+.++..... .. ......
T Consensus 73 ~~~~~~~~~~~~i~~l------~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (276)
T TIGR02240 73 RFPGLAKLAARMLDYL------DYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAGAVMVPGKPKVLMMMASPRR 146 (276)
T ss_pred cHHHHHHHHHHHHHHh------CcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCccccCCCchhHHHHhcCchh
Confidence 10 1134444444443 3468999999999999999998 999999999998764311 00 000000
Q ss_pred hh---------hhhhhhhc-CChh----------------hhh------hcCcccccCCCCCCEEEEEeCCCCCCChHHH
Q 004816 617 FE---------SRYIDNLV-GSEK----------------DYY------EKSPINFVDKFSCPIILFQGLEDKVVPPDQA 664 (729)
Q Consensus 617 ~~---------~~~~~~~~-~~~~----------------~~~------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~ 664 (729)
+. ..+..... .+++ .+. .......+.++++|+|+++|++|..+|++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~v~~~~~ 226 (276)
T TIGR02240 147 YIQPSHGIHIAPDIYGGAFRRDPELAMAHASKVRSGGKLGYYWQLFAGLGWTSIHWLHKIQQPTLVLAGDDDPIIPLINM 226 (276)
T ss_pred hhccccccchhhhhccceeeccchhhhhhhhhcccCCCchHHHHHHHHcCCchhhHhhcCCCCEEEEEeCCCCcCCHHHH
Confidence 00 00000000 0000 000 0111233678899999999999999999999
Q ss_pred HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 665 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+++.+.+. ..+++++++ ||... .+...++.+.+.+|+.+.-.
T Consensus 227 ~~l~~~~~----~~~~~~i~~-gH~~~-~e~p~~~~~~i~~fl~~~~~ 268 (276)
T TIGR02240 227 RLLAWRIP----NAELHIIDD-GHLFL-ITRAEAVAPIIMKFLAEERQ 268 (276)
T ss_pred HHHHHhCC----CCEEEEEcC-CCchh-hccHHHHHHHHHHHHHHhhh
Confidence 88887765 347777875 99754 46677888899999987644
No 76
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.60 E-value=1.6e-14 Score=145.50 Aligned_cols=199 Identities=18% Similarity=0.149 Sum_probs=124.1
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|+||++||.+.+ ...|...++.|. .||.|+++|+||.|..... . .....++..+.+..+++. .+.
T Consensus 12 ~~~~li~~hg~~~~--~~~~~~~~~~l~-~~~~v~~~d~~G~G~s~~~-----~---~~~~~~~~~~~~~~~i~~--~~~ 78 (251)
T TIGR02427 12 GAPVLVFINSLGTD--LRMWDPVLPALT-PDFRVLRYDKRGHGLSDAP-----E---GPYSIEDLADDVLALLDH--LGI 78 (251)
T ss_pred CCCeEEEEcCcccc--hhhHHHHHHHhh-cccEEEEecCCCCCCCCCC-----C---CCCCHHHHHHHHHHHHHH--hCC
Confidence 45899999997433 344556666664 6899999999987654221 1 112345555545544443 244
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH---Hhhh--------cchh----hhh--------------
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM---LRAE--------THKF----ESR-------------- 620 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~---~~~~--------~~~~----~~~-------------- 620 (729)
+++.++|||+||++++.++. +|++++++++.++...... +... .... ...
T Consensus 79 ~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (251)
T TIGR02427 79 ERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTAAKIGTPESWNARIAAVRAEGLAALADAVLERWFTPGFREAHPARL 158 (251)
T ss_pred CceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCccccCchhhHHHHHhhhhhccHHHHHHHHHHHHcccccccCChHHH
Confidence 68999999999999999888 8899999888775432110 0000 0000 000
Q ss_pred --hhhhhcC-Chh-------hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 621 --YIDNLVG-SEK-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 621 --~~~~~~~-~~~-------~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
+...... ... .+...+....+.++++|+|+++|++|..+|.+....+.+.+. ..+++++++++|..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 234 (251)
T TIGR02427 159 DLYRNMLVRQPPDGYAGCCAAIRDADFRDRLGAIAVPTLCIAGDQDGSTPPELVREIADLVP----GARFAEIRGAGHIP 234 (251)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHhcccHHHHhhhcCCCeEEEEeccCCcCChHHHHHHHHhCC----CceEEEECCCCCcc
Confidence 0000000 000 011112223456788999999999999999988887777664 35889999999975
Q ss_pred CCcccHHHHHHHHHHHH
Q 004816 691 RKAENIKFTLEQQMVFF 707 (729)
Q Consensus 691 ~~~~~~~~~~~~~~~fl 707 (729)
.. +......+.+.+|+
T Consensus 235 ~~-~~p~~~~~~i~~fl 250 (251)
T TIGR02427 235 CV-EQPEAFNAALRDFL 250 (251)
T ss_pred cc-cChHHHHHHHHHHh
Confidence 43 45566777777775
No 77
>PLN02872 triacylglycerol lipase
Probab=99.59 E-value=1.4e-14 Score=153.31 Aligned_cols=249 Identities=16% Similarity=0.124 Sum_probs=160.2
Q ss_pred CCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc----hhhhHHHhhCCcEEEEecC
Q 004816 454 YFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----NLSIQYWTSRGWAFVDVNY 529 (729)
Q Consensus 454 ~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~----~~~~~~la~~G~~v~~~d~ 529 (729)
..-..|+..+.+. ||..+....+.+.+.. . ...+.|+|+++||...+...+.. ...+..|+++||.|+.+|.
T Consensus 40 ~gy~~e~h~v~T~-DGy~L~l~ri~~~~~~-~--~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~ 115 (395)
T PLN02872 40 AGYSCTEHTIQTK-DGYLLALQRVSSRNPR-L--GSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNV 115 (395)
T ss_pred cCCCceEEEEECC-CCcEEEEEEcCCCCCC-C--CCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCcccccc
Confidence 3446788889998 9999987777543211 0 12345789999997555444322 2345568899999999999
Q ss_pred CCCCC-CchhHHHhhc-----cCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCC---cceEEEE
Q 004816 530 GGSTG-YGREFRERLL-----GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRD---TFKAGAS 600 (729)
Q Consensus 530 rGs~g-~g~~~~~~~~-----~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~---~~~a~v~ 600 (729)
||.+. +|........ ..|......|+.++++++.+.. .+++.++|||+||.+++.++.+|+ +++++++
T Consensus 116 RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~~~p~~~~~v~~~~~ 192 (395)
T PLN02872 116 RGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAALTQPNVVEMVEAAAL 192 (395)
T ss_pred cccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHhhChHHHHHHHHHHH
Confidence 99653 3322211111 1122222479999999998752 478999999999999986666665 5777777
Q ss_pred eccccChhH----------------Hh--hh------cc---------hhh-----hhhhhhhc----------------
Q 004816 601 LYGVADLSM----------------LR--AE------TH---------KFE-----SRYIDNLV---------------- 626 (729)
Q Consensus 601 ~~~~~d~~~----------------~~--~~------~~---------~~~-----~~~~~~~~---------------- 626 (729)
.+|+..+.. +. .. .. .+. ...+....
T Consensus 193 l~P~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~ 272 (395)
T PLN02872 193 LCPISYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLE 272 (395)
T ss_pred hcchhhhccCCCHHHHHHHHHhHHHHHHHhcCceecCCcHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHh
Confidence 766532100 00 00 00 000 00000000
Q ss_pred ----C---------------------------Chhhhhh-cCcccccCCC--CCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 627 ----G---------------------------SEKDYYE-KSPINFVDKF--SCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 627 ----~---------------------------~~~~~~~-~sp~~~~~~i--~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
+ +...|.. ..|.+.++++ ++|+++++|++|..++++.+.++.+.+.
T Consensus 273 ~~pagtS~k~~~H~~Q~~~s~~f~~yDyg~~~n~~~Yg~~~pP~Y~l~~i~~~~Pv~i~~G~~D~lv~~~dv~~l~~~Lp 352 (395)
T PLN02872 273 YEPHPSSVKNLRHLFQMIRKGTFAHYDYGIFKNLKLYGQVNPPAFDLSLIPKSLPLWMGYGGTDGLADVTDVEHTLAELP 352 (395)
T ss_pred cCCCcchHHHHHHHHHHHhcCCcccCCCCchhhHHHhCCCCCCCcCcccCCCCccEEEEEcCCCCCCCHHHHHHHHHHCC
Confidence 0 1111211 2355667888 4799999999999999999988888876
Q ss_pred hCCCCEEEEEECCCCcc--cCCcccHHHHHHHHHHHHHHHhC
Q 004816 673 ENGLPVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 673 ~~g~~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
. ..+++.+++.+|. +...+..+..++.+++|++++.+
T Consensus 353 ~---~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~~~~ 391 (395)
T PLN02872 353 S---KPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRSLGK 391 (395)
T ss_pred C---ccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHHhhh
Confidence 4 2478889999996 44556677899999999998765
No 78
>PRK11071 esterase YqiA; Provisional
Probab=99.59 E-value=3e-14 Score=136.26 Aligned_cols=180 Identities=19% Similarity=0.120 Sum_probs=113.8
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhh--CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~--~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
|.||++||.+.+...+........+.+ .+|.|+++|++|. + +++...++.+.++. +.
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~---~----------------~~~~~~l~~l~~~~--~~ 60 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPY---P----------------ADAAELLESLVLEH--GG 60 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCC---H----------------HHHHHHHHHHHHHc--CC
Confidence 579999998655544333334455655 3799999999863 2 23444445555442 34
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc-chhhhhhhh--hhcC--ChhhhhhcCcccccCCC
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET-HKFESRYID--NLVG--SEKDYYEKSPINFVDKF 644 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~-~~~~~~~~~--~~~~--~~~~~~~~sp~~~~~~i 644 (729)
+++.++|+|+||++++.++. +|. + +|+++|..+........ ......+.. ..+. ..+......+ ..+. .
T Consensus 61 ~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~i~-~ 135 (190)
T PRK11071 61 DPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPFELLTDYLGENENPYTGQQYVLESRHIYDLKVMQI-DPLE-S 135 (190)
T ss_pred CCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHHHHHHHhcCCcccccCCCcEEEcHHHHHHHHhcCC-ccCC-C
Confidence 68999999999999999998 773 3 47788876642221110 000000000 0000 0011121222 1233 5
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.+|++++||++|.+||++.+.++++.. .++.++|++|.|... ++.++.+.+|+.
T Consensus 136 ~~~v~iihg~~De~V~~~~a~~~~~~~-------~~~~~~ggdH~f~~~---~~~~~~i~~fl~ 189 (190)
T PRK11071 136 PDLIWLLQQTGDEVLDYRQAVAYYAAC-------RQTVEEGGNHAFVGF---ERYFNQIVDFLG 189 (190)
T ss_pred hhhEEEEEeCCCCcCCHHHHHHHHHhc-------ceEEECCCCcchhhH---HHhHHHHHHHhc
Confidence 678899999999999999999999843 566889999999543 678888888874
No 79
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.59 E-value=5.9e-14 Score=145.60 Aligned_cols=215 Identities=12% Similarity=0.106 Sum_probs=132.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++.+..+. ..|.||++||.+.+. ..|...++.|++++ .|+++|+||.|.+.... ..
T Consensus 15 ~g~~i~y~~~G------------~g~~vvllHG~~~~~--~~w~~~~~~L~~~~-~via~D~~G~G~S~~~~-----~~- 73 (295)
T PRK03592 15 LGSRMAYIETG------------EGDPIVFLHGNPTSS--YLWRNIIPHLAGLG-RCLAPDLIGMGASDKPD-----ID- 73 (295)
T ss_pred CCEEEEEEEeC------------CCCEEEEECCCCCCH--HHHHHHHHHHhhCC-EEEEEcCCCCCCCCCCC-----CC-
Confidence 67777754331 126799999986443 45566778888876 99999999776543321 11
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh---hHH-------h---hh
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL---SML-------R---AE 613 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~---~~~-------~---~~ 613 (729)
...++....+..+++. ++.+++.++|||+||.+++.++. +|++++++|++++.... ..+ . ..
T Consensus 74 --~~~~~~a~dl~~ll~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (295)
T PRK03592 74 --YTFADHARYLDAWFDA--LGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAIVRPMTWDDFPPAVRELFQALRS 149 (295)
T ss_pred --CCHHHHHHHHHHHHHH--hCCCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCCCCCcchhhcchhHHHHHHHHhC
Confidence 1233333333333333 13478999999999999999998 99999999998874311 100 0 00
Q ss_pred cc---h-h--hhhhhhhhcC-------Chh---hhh-----------------hcCc--------------ccccCCCCC
Q 004816 614 TH---K-F--ESRYIDNLVG-------SEK---DYY-----------------EKSP--------------INFVDKFSC 646 (729)
Q Consensus 614 ~~---~-~--~~~~~~~~~~-------~~~---~~~-----------------~~sp--------------~~~~~~i~~ 646 (729)
.. . . ...+...... .++ .+. ...+ ...+.++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 229 (295)
T PRK03592 150 PGEGEEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESRRPTLSWPRELPIDGEPADVVALVEEYAQWLATSDV 229 (295)
T ss_pred cccccccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhhhhhhhhhhhcCCCCcchhhHhhhhHhHHHhccCCC
Confidence 00 0 0 0000000000 000 000 0000 012456899
Q ss_pred CEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 647 PIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 647 PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
|+|+++|++|..+++....++...+.. ..++++++++||... .+...+..+.+.+|+.+..
T Consensus 230 P~lii~G~~D~~~~~~~~~~~~~~~~~---~~~~~~i~~~gH~~~-~e~p~~v~~~i~~fl~~~~ 290 (295)
T PRK03592 230 PKLLINAEPGAILTTGAIRDWCRSWPN---QLEITVFGAGLHFAQ-EDSPEEIGAAIAAWLRRLR 290 (295)
T ss_pred CeEEEeccCCcccCcHHHHHHHHHhhh---hcceeeccCcchhhh-hcCHHHHHHHHHHHHHHhc
Confidence 999999999999966666565544332 458899999999764 4667889999999998764
No 80
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.59 E-value=8e-14 Score=143.25 Aligned_cols=200 Identities=18% Similarity=0.138 Sum_probs=124.7
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|+||++||.++. ...|......|+. +|.|+++|+||.|....... .....+++.+.+..+++.. +.+
T Consensus 28 ~~~vv~~hG~~~~--~~~~~~~~~~l~~-~~~vi~~D~~G~G~S~~~~~-------~~~~~~~~~~~l~~~i~~~--~~~ 95 (278)
T TIGR03056 28 GPLLLLLHGTGAS--THSWRDLMPPLAR-SFRVVAPDLPGHGFTRAPFR-------FRFTLPSMAEDLSALCAAE--GLS 95 (278)
T ss_pred CCeEEEEcCCCCC--HHHHHHHHHHHhh-CcEEEeecCCCCCCCCCccc-------cCCCHHHHHHHHHHHHHHc--CCC
Confidence 4789999997543 3445566666654 69999999997654322110 1123455555555555442 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH--------H-hh--hcchhh--------------hhhhhh-
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM--------L-RA--ETHKFE--------------SRYIDN- 624 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~--------~-~~--~~~~~~--------------~~~~~~- 624 (729)
+++|+|||+||.+++.++. +|++++++|+.++...... + .. ...... ..+...
T Consensus 96 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (278)
T TIGR03056 96 PDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALMPFEGMAGTLFPYMARVLACNPFTPPMMSRGAADQQRVERLIRDT 175 (278)
T ss_pred CceEEEECccHHHHHHHHHhCCcccceEEEEcCcccccccccccccchhhHhhhhcccchHHHHhhcccCcchhHHhhcc
Confidence 7899999999999999998 8998999988876432100 0 00 000000 000000
Q ss_pred --hcC--Chhhhh-----------------hc---CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 625 --LVG--SEKDYY-----------------EK---SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 625 --~~~--~~~~~~-----------------~~---sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
... ....+. .. .....++++++|+|+++|++|..+|++..+.+.+.+. .+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~P~lii~g~~D~~vp~~~~~~~~~~~~----~~~~ 251 (278)
T TIGR03056 176 GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRITIPLHLIAGEEDKAVPPDESKRAATRVP----TATL 251 (278)
T ss_pred ccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCCCCEEEEEeCCCcccCHHHHHHHHHhcc----CCeE
Confidence 000 000000 00 0112356788999999999999999988888776654 4588
Q ss_pred EEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 681 VEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 681 ~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++++++||.+.. +...+..+.+.+|++
T Consensus 252 ~~~~~~gH~~~~-e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 252 HVVPGGGHLVHE-EQADGVVGLILQAAE 278 (278)
T ss_pred EEECCCCCcccc-cCHHHHHHHHHHHhC
Confidence 999999997654 456778888888873
No 81
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.58 E-value=7.2e-14 Score=144.00 Aligned_cols=203 Identities=13% Similarity=0.094 Sum_probs=123.4
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||++++.. ..+......+.+.||.|+++|+||.|...... ........+++...+..+++.. +.+
T Consensus 25 ~~~vl~~hG~~g~~~-~~~~~~~~~l~~~g~~vi~~d~~G~G~s~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~ 96 (288)
T TIGR01250 25 KIKLLLLHGGPGMSH-EYLENLRELLKEEGREVIMYDQLGCGYSDQPD-----DSDELWTIDYFVDELEEVREKL--GLD 96 (288)
T ss_pred CCeEEEEcCCCCccH-HHHHHHHHHHHhcCCEEEEEcCCCCCCCCCCC-----cccccccHHHHHHHHHHHHHHc--CCC
Confidence 467899999865542 23444555555569999999999865432110 0000123455555555555542 346
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh-------cch-hh-----------------hhhhhhh
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-------THK-FE-----------------SRYIDNL 625 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~-------~~~-~~-----------------~~~~~~~ 625 (729)
++.++|||+||.+++.++. +|++++++|+.++.......... ... .. .......
T Consensus 97 ~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (288)
T TIGR01250 97 KFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEYVKELNRLRKELPPEVRAAIKRCEASGDYDNPEYQEAVEVF 176 (288)
T ss_pred cEEEEEeehHHHHHHHHHHhCccccceeeEecccccchHHHHHHHHHHhhcChhHHHHHHHHHhccCcchHHHHHHHHHH
Confidence 7999999999999999988 99999999988775432211000 000 00 0000000
Q ss_pred c----C----------------Chhhh---------------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 626 V----G----------------SEKDY---------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 626 ~----~----------------~~~~~---------------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
. . ....+ ...+....+.++++|+|+++|++|. ++++....+.+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~-~~~~~~~~~~~~ 255 (288)
T TIGR01250 177 YHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLSEIKVPTLLTVGEFDT-MTPEAAREMQEL 255 (288)
T ss_pred HHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhhccCCCEEEEecCCCc-cCHHHHHHHHHh
Confidence 0 0 00000 0001122356789999999999998 566777766665
Q ss_pred HHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 671 LKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+. .+++++++++||.... +...++.+.+.+|++
T Consensus 256 ~~----~~~~~~~~~~gH~~~~-e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 256 IA----GSRLVVFPDGSHMTMI-EDPEVYFKLLSDFIR 288 (288)
T ss_pred cc----CCeEEEeCCCCCCccc-CCHHHHHHHHHHHhC
Confidence 54 4578999999997544 466778888888863
No 82
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.58 E-value=5.7e-14 Score=142.42 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=124.1
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~ 568 (729)
...|.||++||.++.. ..|...+..|+ .+|.|+.+|+||.|..... ..+.. ...+|+.++++++
T Consensus 14 ~~~~~iv~lhG~~~~~--~~~~~~~~~l~-~~~~vi~~D~~G~G~s~~~------~~~~~~~~~~d~~~~l~~l------ 78 (255)
T PRK10673 14 HNNSPIVLVHGLFGSL--DNLGVLARDLV-NDHDIIQVDMRNHGLSPRD------PVMNYPAMAQDLLDTLDAL------ 78 (255)
T ss_pred CCCCCEEEECCCCCch--hHHHHHHHHHh-hCCeEEEECCCCCCCCCCC------CCCCHHHHHHHHHHHHHHc------
Confidence 3457899999985543 34555566664 4799999999986644321 01110 1245566655554
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc-cCh--h---HHhh---h-----cchh--hhhhhhhhcC----
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV-ADL--S---MLRA---E-----THKF--ESRYIDNLVG---- 627 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~-~d~--~---~~~~---~-----~~~~--~~~~~~~~~~---- 627 (729)
..+++.++|||+||.+++.++. +|++++++|++++. .+. . .+.. . .... ...++.....
T Consensus 79 ~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (255)
T PRK10673 79 QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSEAGATTRQQAAAIMRQHLNEEGV 158 (255)
T ss_pred CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEEecCCCCccchhhHHHHHHHHHhhhcccccHHHHHHHHHHhcCCHHH
Confidence 3467999999999999999988 89999999987532 111 0 0000 0 0000 0000000000
Q ss_pred ---------C------h----hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 628 ---------S------E----KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 628 ---------~------~----~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
. . +.+........+.++++|+|+++|++|..++.+..+.+.+.+. .+++++++++||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~G~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH 234 (255)
T PRK10673 159 IQFLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWPHPALFIRGGNSPYVTEAYRDDLLAQFP----QARAHVIAGAGH 234 (255)
T ss_pred HHHHHhcCCcceeEeeHHHHHHhHHHHhCCcccCCCCCCeEEEECCCCCCCCHHHHHHHHHhCC----CcEEEEeCCCCC
Confidence 0 0 0111111112355678999999999999999877777766554 558899999999
Q ss_pred ccCCcccHHHHHHHHHHHHHH
Q 004816 689 GFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.+. .+......+.+.+||.+
T Consensus 235 ~~~-~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 235 WVH-AEKPDAVLRAIRRYLND 254 (255)
T ss_pred eee-ccCHHHHHHHHHHHHhc
Confidence 653 45667788888888875
No 83
>PLN02965 Probable pheophorbidase
Probab=99.57 E-value=8.2e-14 Score=141.15 Aligned_cols=200 Identities=12% Similarity=0.125 Sum_probs=124.1
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC-Cc
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE-KR 572 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~r 572 (729)
.||++||.+.+ ...|...+..|++.||.|+++|+||.|.+...- . .....+++..-+..+++. ++. ++
T Consensus 5 ~vvllHG~~~~--~~~w~~~~~~L~~~~~~via~Dl~G~G~S~~~~-----~--~~~~~~~~a~dl~~~l~~--l~~~~~ 73 (255)
T PLN02965 5 HFVFVHGASHG--AWCWYKLATLLDAAGFKSTCVDLTGAGISLTDS-----N--TVSSSDQYNRPLFALLSD--LPPDHK 73 (255)
T ss_pred EEEEECCCCCC--cCcHHHHHHHHhhCCceEEEecCCcCCCCCCCc-----c--ccCCHHHHHHHHHHHHHh--cCCCCC
Confidence 49999998543 455777788888899999999999876543210 0 012233433333333332 122 58
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEecccc---C---hhHHh---hhc------------c-h-----hhhhhhhh
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA---D---LSMLR---AET------------H-K-----FESRYIDN 624 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~---d---~~~~~---~~~------------~-~-----~~~~~~~~ 624 (729)
+.++||||||.+++.++. +|++++++|+.++.. . ...+. ... . . ....+...
T Consensus 74 ~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 74 VILVGHSIGGGSVTEALCKFTDKISMAIYVAAAMVKPGSIISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred EEEEecCcchHHHHHHHHhCchheeEEEEEccccCCCCCCccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 999999999999999998 999999999887641 1 01110 000 0 0 00001000
Q ss_pred h-cC--Chh--hh--hh--cCcc----------cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 625 L-VG--SEK--DY--YE--KSPI----------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 625 ~-~~--~~~--~~--~~--~sp~----------~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
. .. ..+ .+ .. ..+. ..+.++++|+|+++|++|..+|+..++.+.+.+. .++++++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vP~lvi~g~~D~~~~~~~~~~~~~~~~----~a~~~~i~~ 229 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPVRAFQDLDKLPPNPEAEKVPRVYIKTAKDNLFDPVRQDVMVENWP----PAQTYVLED 229 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCCcchhhhhhccchhhcCCCCEEEEEcCCCCCCCHHHHHHHHHhCC----cceEEEecC
Confidence 0 00 000 00 00 0000 1234688999999999999999988888877765 348899999
Q ss_pred CCcccCCcccHHHHHHHHHHHHHH
Q 004816 686 EQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 686 ~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+||.... +...++.+.+.+|+.+
T Consensus 230 ~GH~~~~-e~p~~v~~~l~~~~~~ 252 (255)
T PLN02965 230 SDHSAFF-SVPTTLFQYLLQAVSS 252 (255)
T ss_pred CCCchhh-cCHHHHHHHHHHHHHH
Confidence 9997543 5666777777777654
No 84
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.57 E-value=4.3e-14 Score=139.77 Aligned_cols=181 Identities=19% Similarity=0.263 Sum_probs=117.1
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEE
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 574 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 574 (729)
||++||.+.+. ..|...+..| ++||.|+++|+||.|....... ......++....+..+++.- ..+++.
T Consensus 1 vv~~hG~~~~~--~~~~~~~~~l-~~~~~v~~~d~~G~G~s~~~~~------~~~~~~~~~~~~l~~~l~~~--~~~~~~ 69 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWDPLAEAL-ARGYRVIAFDLPGHGRSDPPPD------YSPYSIEDYAEDLAELLDAL--GIKKVI 69 (228)
T ss_dssp EEEE-STTTTG--GGGHHHHHHH-HTTSEEEEEECTTSTTSSSHSS------GSGGSHHHHHHHHHHHHHHT--TTSSEE
T ss_pred eEEECCCCCCH--HHHHHHHHHH-hCCCEEEEEecCCccccccccc------cCCcchhhhhhhhhhccccc--cccccc
Confidence 78999985443 6677788888 4899999999998665443211 11123444444444444432 237899
Q ss_pred EEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh--h----hcch-----------hhhhhhhhhcC--Ch-----
Q 004816 575 ITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR--A----ETHK-----------FESRYIDNLVG--SE----- 629 (729)
Q Consensus 575 i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~--~----~~~~-----------~~~~~~~~~~~--~~----- 629 (729)
++|||+||.+++.++. +|++++++|+.+|........ . .... +.......... ..
T Consensus 70 lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 70 LVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLPDSPSRSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp EEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeecccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 9999999999999998 999999999999988643211 0 0000 00000000000 00
Q ss_pred -------hh----hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 630 -------KD----YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 630 -------~~----~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
+. +...+....+.++++|+|+++|++|..++.+...++.+.+. +++++++|++||.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~D~~~~~~~~~~~~~~~~----~~~~~~~~~~gH~~ 217 (228)
T PF12697_consen 150 SSRRALAEYLRSNLWQADLSEALPRIKVPVLVIHGEDDPIVPPESAEELADKLP----NAELVVIPGAGHFL 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGSSSEEEEEEETTSSSSHHHHHHHHHHHST----TEEEEEETTSSSTH
T ss_pred ccccccccccccccccccccccccccCCCeEEeecCCCCCCCHHHHHHHHHHCC----CCEEEEECCCCCcc
Confidence 00 11223335567889999999999999999777766666553 67999999999975
No 85
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.57 E-value=1.5e-13 Score=145.92 Aligned_cols=231 Identities=18% Similarity=0.207 Sum_probs=139.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc---------cchhhh---HHHhhCCcEEEEecCCCC-CC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG---------ILNLSI---QYWTSRGWAFVDVNYGGS-TG 534 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~---------~~~~~~---~~la~~G~~v~~~d~rGs-~g 534 (729)
+|.++++..+.+.+ ....|.||++||...+.... .|...+ ..|...+|.|+++|+||. .|
T Consensus 14 ~~~~~~y~~~g~~~-------~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~D~~G~~~g 86 (351)
T TIGR01392 14 SDVRVAYETYGTLN-------AERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTDRYFVVCSNVLGGCYG 86 (351)
T ss_pred CCceEEEEeccccC-------CCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCCceEEEEecCCCCCCC
Confidence 56778877775533 12246899999975543221 233332 356678999999999983 22
Q ss_pred -Cchh-HHHhh---ccCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh
Q 004816 535 -YGRE-FRERL---LGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL 607 (729)
Q Consensus 535 -~g~~-~~~~~---~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~ 607 (729)
.+.+ +.... ..+.....++|+...+..+++.. ..++ +.++||||||.+++.++. +|++++++|+.++....
T Consensus 87 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~~~ 164 (351)
T TIGR01392 87 STGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSARH 164 (351)
T ss_pred CCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCCcC
Confidence 2221 10000 00111234667666666555553 3357 999999999999999888 99999999998875431
Q ss_pred hH----Hhh----h---cc---------------hhh-hh------h-----hhhhcC----------------------
Q 004816 608 SM----LRA----E---TH---------------KFE-SR------Y-----IDNLVG---------------------- 627 (729)
Q Consensus 608 ~~----~~~----~---~~---------------~~~-~~------~-----~~~~~~---------------------- 627 (729)
.. +.. . .. ... .. + +...+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 244 (351)
T TIGR01392 165 SAWCIAFNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVESY 244 (351)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHHHH
Confidence 11 000 0 00 000 00 0 000000
Q ss_pred ------------Chh-------hhhhcCc-------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 628 ------------SEK-------DYYEKSP-------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 628 ------------~~~-------~~~~~sp-------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
+.. .+...+. ...+++|++|+|+++|++|..+|++.++++.+.+......++++
T Consensus 245 ~~~~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~~P~Lvi~G~~D~~~p~~~~~~~a~~i~~~~~~v~~~ 324 (351)
T TIGR01392 245 LRYQGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIKAPFLVVSITSDWLFPPAESRELAKALPAAGLRVTYV 324 (351)
T ss_pred HHHHHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCCCCEEEEEeCCccccCHHHHHHHHHHHhhcCCceEEE
Confidence 000 0111110 13466789999999999999999999999999998765444554
Q ss_pred EE-CCCCcccCCcccHHHHHHHHHHHHH
Q 004816 682 EY-EGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 682 ~~-~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.+ +++||... .+...++.+.+.+||+
T Consensus 325 ~i~~~~GH~~~-le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 325 EIESPYGHDAF-LVETDQVEELIRGFLR 351 (351)
T ss_pred EeCCCCCcchh-hcCHHHHHHHHHHHhC
Confidence 54 68999653 3566777788888863
No 86
>PRK07581 hypothetical protein; Validated
Probab=99.56 E-value=1.3e-13 Score=146.07 Aligned_cols=213 Identities=12% Similarity=0.059 Sum_probs=126.8
Q ss_pred CCCEEEEEcCCCCCCccccchhhh---HHHhhCCcEEEEecCCCCCCCchhHHH---hhccCCCccc-HHHHHHHHHHHH
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSI---QYWTSRGWAFVDVNYGGSTGYGREFRE---RLLGRWGIVD-VNDCCSCATFLV 563 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~---~~la~~G~~v~~~d~rGs~g~g~~~~~---~~~~~~~~~~-~~D~~~~~~~l~ 563 (729)
+.|+||++||.++.... +...+ ..|...+|.|+++|+||.|.+...... .....+.... .+|+.+....+.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NEWLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNTPAPFNAARFPHVTIYDNVRAQHRLLT 117 (339)
T ss_pred CCCEEEEeCCCCCCccc--chhhccCCCccCcCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCceeHHHHHHHHHHHHH
Confidence 45778888876544322 22221 356667899999999987654322110 0000111111 355554344454
Q ss_pred hCCCCCCCcE-EEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH--------h----h-----------------
Q 004816 564 GSGKADEKRL-CITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML--------R----A----------------- 612 (729)
Q Consensus 564 ~~~~~d~~ri-~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~--------~----~----------------- 612 (729)
+.. ..+++ .|+||||||++|+.++. +|++++++|+.++....... . .
T Consensus 118 ~~l--gi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 195 (339)
T PRK07581 118 EKF--GIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAGTAKTTPHNFVFLEGLKAALTADPAFNGGWYAEPPERGL 195 (339)
T ss_pred HHh--CCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeecCCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCcHHHHH
Confidence 432 34684 78999999999999998 99999999988654321000 0 0
Q ss_pred -----hc------chh-h------------hhh----hhhhcC--Chhh-------hhh----------cCcccccCCCC
Q 004816 613 -----ET------HKF-E------------SRY----IDNLVG--SEKD-------YYE----------KSPINFVDKFS 645 (729)
Q Consensus 613 -----~~------~~~-~------------~~~----~~~~~~--~~~~-------~~~----------~sp~~~~~~i~ 645 (729)
.. ..+ . ..+ ...... ++.. +.. .+....+.+|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~ 275 (339)
T PRK07581 196 RAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFLPRDPNNLLAMLWTWQRGDISRNPAYGGDLAAALGSIT 275 (339)
T ss_pred HHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhcccCcccHHHHHHHhhhcccccCcccCCCHHHHHhcCC
Confidence 00 000 0 000 000000 0000 000 01123456789
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC-CCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEG-EQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|+|+++|++|..+|+..+..+.+.+. ..+++++++ +||.. ..+...++...+.+|+.+++.
T Consensus 276 ~PtLvI~G~~D~~~p~~~~~~l~~~ip----~a~l~~i~~~~GH~~-~~~~~~~~~~~~~~~~~~~~~ 338 (339)
T PRK07581 276 AKTFVMPISTDLYFPPEDCEAEAALIP----NAELRPIESIWGHLA-GFGQNPADIAFIDAALKELLA 338 (339)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhCC----CCeEEEeCCCCCccc-cccCcHHHHHHHHHHHHHHHh
Confidence 999999999999999998888877764 358899998 89964 345566788888999998764
No 87
>PLN00021 chlorophyllase
Probab=99.56 E-value=1.3e-13 Score=141.56 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=142.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI 549 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~ 549 (729)
..+.+.++.|.. .+++|+||++||+.. ....|...++.|+++||.|+++|++|..+.+ ..
T Consensus 37 ~~~p~~v~~P~~-------~g~~PvVv~lHG~~~--~~~~y~~l~~~Las~G~~VvapD~~g~~~~~-----------~~ 96 (313)
T PLN00021 37 PPKPLLVATPSE-------AGTYPVLLFLHGYLL--YNSFYSQLLQHIASHGFIVVAPQLYTLAGPD-----------GT 96 (313)
T ss_pred CCceEEEEeCCC-------CCCCCEEEEECCCCC--CcccHHHHHHHHHhCCCEEEEecCCCcCCCC-----------ch
Confidence 457778898965 467899999999843 3445777888999999999999988643211 11
Q ss_pred ccHHHHHHHHHHHHhC--------CCCCCCcEEEEEcChHHHHHHHHHh-CC-----CcceEEEEeccccChhHHhhhcc
Q 004816 550 VDVNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-FR-----DTFKAGASLYGVADLSMLRAETH 615 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~~-----~~~~a~v~~~~~~d~~~~~~~~~ 615 (729)
.+.+|..++++|+.+. ..+|.+|++|+|||+||++++.++. ++ .+|+++|...|+........ +
T Consensus 97 ~~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~~~~~~-~- 174 (313)
T PLN00021 97 DEIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGTSKGKQ-T- 174 (313)
T ss_pred hhHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccccccccccC-C-
Confidence 2356677777877652 2367789999999999999999987 55 36899999988755321100 0
Q ss_pred hhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCC-----CCC----hH-HHHHHHHHHHhCCCCEEEEEECC
Q 004816 616 KFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK-----VVP----PD-QARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~-----~vp----~~-~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
.+..+. .. ....++..|+|++++..|. .+| .. +..++++.++. +..+.+.++
T Consensus 175 ------------~p~il~-~~--~~s~~~~~P~liig~g~~~~~~~~~~p~~ap~~~~~~~f~~~~~~---~~~~~~~~~ 236 (313)
T PLN00021 175 ------------PPPVLT-YA--PHSFNLDIPVLVIGTGLGGEPRNPLFPPCAPDGVNHAEFFNECKA---PAVHFVAKD 236 (313)
T ss_pred ------------CCcccc-cC--cccccCCCCeEEEecCCCcccccccccccCCCCCCHHHHHHhcCC---CeeeeeecC
Confidence 000010 00 1122367999999998763 222 32 34677777654 778889999
Q ss_pred CCcccC-Cc---------------------ccHHHHHHHHHHHHHHHhCCCCC-------CCCCCceeccC
Q 004816 686 EQHGFR-KA---------------------ENIKFTLEQQMVFFARVVGHFDV-------ADEIIPIKIDN 727 (729)
Q Consensus 686 ~gH~~~-~~---------------------~~~~~~~~~~~~fl~~~l~~~~~-------~~~~~~~~~~~ 727 (729)
.||.-. .. ..++.....+..||+.+|.+..- ...+.|++++.
T Consensus 237 ~gH~~~~~~~~~~~~~~~~~~~c~~g~~~~~~r~~~~g~~~aFl~~~l~~~~~~~~~~~~~~~~~p~~l~~ 307 (313)
T PLN00021 237 YGHMDMLDDDTSGIRGKITGCMCKNGKPRKPMRRFVGGAVVAFLKAYLEGDTGDLDAIVDGPSLAPVKLDP 307 (313)
T ss_pred CCcceeecCCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHhcCCCCCCeeccc
Confidence 999621 11 11234445678999999864321 12356666654
No 88
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.55 E-value=2.5e-13 Score=136.44 Aligned_cols=243 Identities=18% Similarity=0.190 Sum_probs=166.8
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
++.|+|+... +||.+++.+ +++++||++ -.-++.+++||||++|+|++--.... ....+||+++.++|++
T Consensus 50 GD~IiFt~~D--dlWe~slk~--g~~~ritS~----lGVvnn~kf~pdGrkvaf~rv~~~ss--~~taDly~v~~e~Ge~ 119 (668)
T COG4946 50 GDRIIFTCCD--DLWEYSLKD--GKPLRITSG----LGVVNNPKFSPDGRKVAFSRVMLGSS--LQTADLYVVPSEDGEA 119 (668)
T ss_pred CcEEEEEech--HHHHhhhcc--CCeeEEecc----cceeccccCCCCCcEEEEEEEEecCC--CccccEEEEeCCCCcE
Confidence 7789999654 499999998 899999987 34568899999999999965432211 1136899999999999
Q ss_pred EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 234 QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 234 ~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
+++|- |..+..-.-|+|||+-|+++..-.+-..| ..||.+..+ +.+..++.+.+. .+..+ .||.++
T Consensus 120 kRiTyfGr~fT~VaG~~~dg~iiV~TD~~tPF~q~--~~lYkv~~d-g~~~e~LnlGpa---------thiv~-~dg~iv 186 (668)
T COG4946 120 KRITYFGRRFTRVAGWIPDGEIIVSTDFHTPFSQW--TELYKVNVD-GIKTEPLNLGPA---------THIVI-KDGIIV 186 (668)
T ss_pred EEEEEeccccceeeccCCCCCEEEEeccCCCcccc--eeeeEEccC-CceeeeccCCce---------eeEEE-eCCEEE
Confidence 99986 33333445799999988877654443323 468999887 554433222111 22222 566433
Q ss_pred EEEecC---------CC-ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 313 FVTDRK---------NG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 313 ~~~~~~---------~g-~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
..++.- .| ...||.-...+...+.+.+.+..+..|.-+ +.++||.++.+|..+||.
T Consensus 187 igRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV--------------~~RvYFlsD~eG~GnlYS 252 (668)
T COG4946 187 IGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV--------------GERVYFLSDHEGVGNLYS 252 (668)
T ss_pred EccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEE--------------cceEEEEecccCccceEE
Confidence 333210 11 234775433333677777777666666543 468999999999999999
Q ss_pred EECCCCceEeeccCC-cceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceeeee
Q 004816 383 LDDFGHSLSLLDIPF-TDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVDF 438 (729)
Q Consensus 383 ~d~~~g~~~~lt~~~-~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt~ 438 (729)
+|++|+.+++.|.-. .-...+..|++++++..+ +.+|++|+++.++++|.-
T Consensus 253 vdldGkDlrrHTnFtdYY~R~~nsDGkrIvFq~~-----GdIylydP~td~lekldI 304 (668)
T COG4946 253 VDLDGKDLRRHTNFTDYYPRNANSDGKRIVFQNA-----GDIYLYDPETDSLEKLDI 304 (668)
T ss_pred eccCCchhhhcCCchhccccccCCCCcEEEEecC-----CcEEEeCCCcCcceeeec
Confidence 999999988877532 223444778888888766 469999999988877763
No 89
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.55 E-value=2.8e-13 Score=144.01 Aligned_cols=204 Identities=17% Similarity=0.208 Sum_probs=124.0
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.+ ...|...+..|++ +|.|+++|++|.|.+.... ... ...++....+..+++. ...++
T Consensus 89 p~lvllHG~~~~--~~~w~~~~~~L~~-~~~via~Dl~G~G~S~~~~----~~~---~~~~~~a~~l~~~l~~--l~~~~ 156 (360)
T PLN02679 89 PPVLLVHGFGAS--IPHWRRNIGVLAK-NYTVYAIDLLGFGASDKPP----GFS---YTMETWAELILDFLEE--VVQKP 156 (360)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCC----Ccc---ccHHHHHHHHHHHHHH--hcCCC
Confidence 679999998544 3456666677765 7999999999766543210 001 1233333333322222 13468
Q ss_pred EEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChh------HHhh--------------hcchh-----h----hhh
Q 004816 573 LCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLS------MLRA--------------ETHKF-----E----SRY 621 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~------~~~~--------------~~~~~-----~----~~~ 621 (729)
+.|+|||+||.+++.++. +|++++++|++++..... .... ..... . ...
T Consensus 157 ~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (360)
T PLN02679 157 TVLIGNSVGSLACVIAASESTRDLVRGLVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRDN 236 (360)
T ss_pred eEEEEECHHHHHHHHHHHhcChhhcCEEEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHHH
Confidence 999999999999988775 699999999988642110 0000 00000 0 000
Q ss_pred h----hhhcC------------------C---hhhhhh-------cCcccccCCCCCCEEEEEeCCCCCCChHHH-HHHH
Q 004816 622 I----DNLVG------------------S---EKDYYE-------KSPINFVDKFSCPIILFQGLEDKVVPPDQA-RKIY 668 (729)
Q Consensus 622 ~----~~~~~------------------~---~~~~~~-------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~-~~~~ 668 (729)
+ ..... . ...+.. .+....+.++++|+|+++|++|..+|++.. .+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~~~p~~~~~~~~~ 316 (360)
T PLN02679 237 LKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDPFTPLDGPVGKYF 316 (360)
T ss_pred HHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCCCcCchhhHHHHH
Confidence 0 00000 0 001110 011234567899999999999999998743 2344
Q ss_pred HHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 669 KALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 669 ~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+.+.+.-.++++++++++||.. ..+..+++.+.+.+||.+
T Consensus 317 ~~l~~~ip~~~l~~i~~aGH~~-~~E~Pe~~~~~I~~FL~~ 356 (360)
T PLN02679 317 SSLPSQLPNVTLYVLEGVGHCP-HDDRPDLVHEKLLPWLAQ 356 (360)
T ss_pred HhhhccCCceEEEEcCCCCCCc-cccCHHHHHHHHHHHHHh
Confidence 5555443467999999999974 456788899999999976
No 90
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.55 E-value=7e-15 Score=148.45 Aligned_cols=213 Identities=20% Similarity=0.175 Sum_probs=115.1
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCcc------------ccc----hhhhHHHhhC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEAR------------GIL----NLSIQYWTSR 520 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~------------~~~----~~~~~~la~~ 520 (729)
+.+.+.|... ++..+.++++.|.+ ..++.|+||++||....... ..+ ......|+.+
T Consensus 87 ~~EKv~f~~~-p~~~vpaylLvPd~------~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~ 159 (390)
T PF12715_consen 87 TREKVEFNTT-PGSRVPAYLLVPDG------AKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR 159 (390)
T ss_dssp EEEEEEE--S-TTB-EEEEEEEETT--------S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT
T ss_pred EEEEEEEEcc-CCeeEEEEEEecCC------CCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC
Confidence 4578888887 89999999999987 24678999999984321100 001 1256789999
Q ss_pred CcEEEEecCCCCCCCchhH----------HH------hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHH
Q 004816 521 GWAFVDVNYGGSTGYGREF----------RE------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYT 584 (729)
Q Consensus 521 G~~v~~~d~rGs~g~g~~~----------~~------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~ 584 (729)
||.|+++|..|-|..+..- .. .....+......|.+.++|||..++.+|++||+++|+|+||+.
T Consensus 160 GYVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 160 GYVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp TSEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CCEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHH
Confidence 9999999998765543210 00 0111222334667778999999999999999999999999999
Q ss_pred HHHHHhCCCcceEEEEeccccChhHHhhhc-----------chhhhhhhhhhcCChhhhhhcCcccccCC-CCCCEEEEE
Q 004816 585 TLAALAFRDTFKAGASLYGVADLSMLRAET-----------HKFESRYIDNLVGSEKDYYEKSPINFVDK-FSCPIILFQ 652 (729)
Q Consensus 585 a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~sp~~~~~~-i~~PvL~i~ 652 (729)
++++++-.++++++|+.+-+.....-.... ......++..++...+.-. -+.- ...|+|++.
T Consensus 240 a~~LaALDdRIka~v~~~~l~~~~~~~~~mt~~~~~~~~~~~~~~~~~iPgl~r~~D~Pd------IasliAPRPll~~n 313 (390)
T PF12715_consen 240 AWWLAALDDRIKATVANGYLCTTQERALLMTMPNNNGLRGFPNCICNYIPGLWRYFDFPD------IASLIAPRPLLFEN 313 (390)
T ss_dssp HHHHHHH-TT--EEEEES-B--HHHHHHHB----TTS----SS-GGG--TTCCCC--HHH------HHHTTTTS-EEESS
T ss_pred HHHHHHcchhhHhHhhhhhhhccchhhHhhccccccccCcCcchhhhhCccHHhhCccHH------HHHHhCCCcchhhc
Confidence 999999778999998876654433211000 0111122222221111000 0111 136899999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECC
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEG 685 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~ 685 (729)
|..|..+|. .++-|+.. .++.+++++.||.
T Consensus 314 G~~Dklf~i--V~~AY~~~-~~p~n~~~~~~p~ 343 (390)
T PF12715_consen 314 GGKDKLFPI--VRRAYAIM-GAPDNFQIHHYPK 343 (390)
T ss_dssp -B-HHHHHH--HHHHHHHT-T-GGGEEE---GG
T ss_pred CCcccccHH--HHHHHHhc-CCCcceEEeeccc
Confidence 999987654 33333332 2334688888885
No 91
>PRK06489 hypothetical protein; Provisional
Probab=99.55 E-value=2.4e-13 Score=144.89 Aligned_cols=212 Identities=17% Similarity=0.169 Sum_probs=125.0
Q ss_pred CCEEEEEcCCCCCCccccchhhhHH-------HhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHH-HHHH
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQY-------WTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCA-TFLV 563 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~-------la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~-~~l~ 563 (729)
.|.||++||.+.+...+.-...... +.+.+|.|+++|+||.|.+...- ............+++...+ ..+.
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p~-~~~~~~~~~~~~~~~a~~~~~~l~ 147 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKPS-DGLRAAFPRYDYDDMVEAQYRLVT 147 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCCC-cCCCCCCCcccHHHHHHHHHHHHH
Confidence 4779999998654333210122222 23578999999999876542110 0000001113355555433 3343
Q ss_pred hCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEEeccccC--------hhHH-h---hhcc-----h------hh
Q 004816 564 GSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD--------LSML-R---AETH-----K------FE 618 (729)
Q Consensus 564 ~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d--------~~~~-~---~~~~-----~------~~ 618 (729)
+.. +.+++. |+||||||++|+.++. +|++++++|+.++... .... . .... . ..
T Consensus 148 ~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (360)
T PRK06489 148 EGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQPTEMSGRNWMWRRMLIESIRNDPAWNNGNYTTQPPSL 225 (360)
T ss_pred Hhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccCcccccHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHH
Confidence 432 335774 8999999999999998 9999999998876421 0000 0 0000 0 00
Q ss_pred h----h------------------------hhhhhcC-----Chhhhh-------hcCcccccCCCCCCEEEEEeCCCCC
Q 004816 619 S----R------------------------YIDNLVG-----SEKDYY-------EKSPINFVDKFSCPIILFQGLEDKV 658 (729)
Q Consensus 619 ~----~------------------------~~~~~~~-----~~~~~~-------~~sp~~~~~~i~~PvL~i~G~~D~~ 658 (729)
. . +...... ....+. ..+....+.+|++|+|+++|++|.+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~I~~PvLvI~G~~D~~ 305 (360)
T PRK06489 226 KRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPVTADANDFLYQWDSSRDYNPSPDLEKIKAPVLAINSADDER 305 (360)
T ss_pred HHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhhhcCHHHHHHHHHHhhccChHHHHHhCCCCEEEEecCCCcc
Confidence 0 0 0000000 001110 1122234678999999999999999
Q ss_pred CChHHH--HHHHHHHHhCCCCEEEEEECCC----CcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 659 VPPDQA--RKIYKALKENGLPVALVEYEGE----QHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 659 vp~~~~--~~~~~~l~~~g~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
+|++.+ +++.+.+. ..+++++|++ ||... +....+.+.+.+|+.++-+
T Consensus 306 ~p~~~~~~~~la~~ip----~a~l~~i~~a~~~~GH~~~--e~P~~~~~~i~~FL~~~~~ 359 (360)
T PRK06489 306 NPPETGVMEAALKRVK----HGRLVLIPASPETRGHGTT--GSAKFWKAYLAEFLAQVPK 359 (360)
T ss_pred cChhhHHHHHHHHhCc----CCeEEEECCCCCCCCcccc--cCHHHHHHHHHHHHHhccc
Confidence 999865 56666664 4589999996 99764 5788888999999987543
No 92
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.55 E-value=3.3e-13 Score=145.01 Aligned_cols=209 Identities=14% Similarity=0.128 Sum_probs=125.6
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHH-HHHHH-HHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVN-DCCSC-ATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~-D~~~~-~~~l~~~~~ 567 (729)
..|+||++||.++.. ..|...+..|++ +|.|+++|+||.|...+.. ..... .+.. .+... .+++...
T Consensus 104 ~~p~vvllHG~~~~~--~~~~~~~~~L~~-~~~vi~~D~rG~G~S~~~~-----~~~~~~~~~~~~~~~~i~~~~~~l-- 173 (402)
T PLN02894 104 DAPTLVMVHGYGASQ--GFFFRNFDALAS-RFRVIAIDQLGWGGSSRPD-----FTCKSTEETEAWFIDSFEEWRKAK-- 173 (402)
T ss_pred CCCEEEEECCCCcch--hHHHHHHHHHHh-CCEEEEECCCCCCCCCCCC-----cccccHHHHHHHHHHHHHHHHHHc--
Confidence 458899999985432 334445566655 5999999999877654321 00000 0111 12222 2333322
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh---H----Hhhhcc------------------------
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---M----LRAETH------------------------ 615 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---~----~~~~~~------------------------ 615 (729)
+.+++.++||||||++++.++. +|++++++|+.+|..-.. . ......
T Consensus 174 -~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 252 (402)
T PLN02894 174 -NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFTPQKIIRGL 252 (402)
T ss_pred -CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCCHHHHHHhc
Confidence 4568999999999999999888 999999999887642110 0 000000
Q ss_pred -----hhhhhhhhh----h-----cC--Chhhh--------------------------hhcCcc-cccCCCCCCEEEEE
Q 004816 616 -----KFESRYIDN----L-----VG--SEKDY--------------------------YEKSPI-NFVDKFSCPIILFQ 652 (729)
Q Consensus 616 -----~~~~~~~~~----~-----~~--~~~~~--------------------------~~~sp~-~~~~~i~~PvL~i~ 652 (729)
.....+... . .. ..+.+ ....+. ..+.++++|+|+++
T Consensus 253 gp~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~vP~liI~ 332 (402)
T PLN02894 253 GPWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESASEWKVPTTFIY 332 (402)
T ss_pred cchhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcccCCCCEEEEE
Confidence 000000000 0 00 00000 001222 33677899999999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCC
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFD 715 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~ 715 (729)
|++|.+++ ....++.+.+ +.++++++++++||.. ..++...+.+.+.+|++.++.+.+
T Consensus 333 G~~D~i~~-~~~~~~~~~~---~~~~~~~~i~~aGH~~-~~E~P~~f~~~l~~~~~~~~~~~~ 390 (402)
T PLN02894 333 GRHDWMNY-EGAVEARKRM---KVPCEIIRVPQGGHFV-FLDNPSGFHSAVLYACRKYLSPDR 390 (402)
T ss_pred eCCCCCCc-HHHHHHHHHc---CCCCcEEEeCCCCCee-eccCHHHHHHHHHHHHHHhccCCc
Confidence 99998664 5555544443 3457899999999964 446778899999999999998543
No 93
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.55 E-value=2.6e-13 Score=145.26 Aligned_cols=234 Identities=16% Similarity=0.178 Sum_probs=141.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-----------cchhhh---HHHhhCCcEEEEecCCCC-
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----------ILNLSI---QYWTSRGWAFVDVNYGGS- 532 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-----------~~~~~~---~~la~~G~~v~~~d~rGs- 532 (729)
+|.++.+..+-..+ .+..|.||++||.+.+.... .|...+ ..+...+|.|+++|++|.
T Consensus 31 ~~~~~~y~~~G~~~-------~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~~~~vi~~Dl~G~~ 103 (379)
T PRK00175 31 PPVELAYETYGTLN-------ADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTDRYFVICSNVLGGC 103 (379)
T ss_pred CCceEEEEeccccC-------CCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCccceEEEeccCCCCC
Confidence 45566665554321 12348899999986654321 133322 134367899999999983
Q ss_pred CCC-chhHHHh-----hccCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 533 TGY-GREFRER-----LLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 533 ~g~-g~~~~~~-----~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
++. +.+.... ...++....++|+.+.+..+++.. +.++ +.++||||||.+++.++. +|++++++|++++.
T Consensus 104 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 181 (379)
T PRK00175 104 KGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASS 181 (379)
T ss_pred CCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCC
Confidence 222 2110000 000111244667666666666553 3356 589999999999999988 99999999998865
Q ss_pred cChhH----Hh-------hhc-------------ch--------------------hhhhhhhhh---------------
Q 004816 605 ADLSM----LR-------AET-------------HK--------------------FESRYIDNL--------------- 625 (729)
Q Consensus 605 ~d~~~----~~-------~~~-------------~~--------------------~~~~~~~~~--------------- 625 (729)
..... +. ... .. +...+....
T Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~~~~ 261 (379)
T PRK00175 182 ARLSAQNIAFNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVEFQV 261 (379)
T ss_pred cccCHHHHHHHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCccchH
Confidence 42110 00 000 00 000000000
Q ss_pred -----------c--CChhhh-------hhcC--------cccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCC
Q 004816 626 -----------V--GSEKDY-------YEKS--------PINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLP 677 (729)
Q Consensus 626 -----------~--~~~~~~-------~~~s--------p~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~ 677 (729)
. -+...+ ...+ -...+++|++|+|+++|++|..+|++.++++.+.+...+..
T Consensus 262 ~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~~PtLvI~G~~D~~~p~~~~~~la~~i~~a~~~ 341 (379)
T PRK00175 262 ESYLRYQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIKARFLVVSFTSDWLFPPARSREIVDALLAAGAD 341 (379)
T ss_pred HHHHHHHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCCCCEEEEEECCccccCHHHHHHHHHHHHhcCCC
Confidence 0 000000 0000 11235688999999999999999999999999999987777
Q ss_pred EEEEEEC-CCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 678 VALVEYE-GEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 678 ~~~~~~~-~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+++++++ ++||... .+...++.+.+.+||.+.-
T Consensus 342 ~~l~~i~~~~GH~~~-le~p~~~~~~L~~FL~~~~ 375 (379)
T PRK00175 342 VSYAEIDSPYGHDAF-LLDDPRYGRLVRAFLERAA 375 (379)
T ss_pred eEEEEeCCCCCchhH-hcCHHHHHHHHHHHHHhhh
Confidence 7888885 8999743 3556678888999998754
No 94
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.55 E-value=3.9e-13 Score=132.74 Aligned_cols=208 Identities=17% Similarity=0.150 Sum_probs=130.0
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~ 568 (729)
...|+|+++||.|.....+ +.....|+++||.|+++|+||.|.+... .....+.. ....|+.+.++.|-
T Consensus 42 ~~gP~illlHGfPe~wysw--r~q~~~la~~~~rviA~DlrGyG~Sd~P---~~~~~Yt~~~l~~di~~lld~Lg----- 111 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESWYSW--RHQIPGLASRGYRVIAPDLRGYGFSDAP---PHISEYTIDELVGDIVALLDHLG----- 111 (322)
T ss_pred CCCCEEEEEccCCccchhh--hhhhhhhhhcceEEEecCCCCCCCCCCC---CCcceeeHHHHHHHHHHHHHHhc-----
Confidence 3469999999998765444 4456789999999999999975542221 11111110 12555666666553
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC---hhHHhhh---------------cchhhh----------
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLRAE---------------THKFES---------- 619 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d---~~~~~~~---------------~~~~~~---------- 619 (729)
-+|+.++||++|+.+|..++. +|+++++.|+.+.... ....... ....+.
T Consensus 112 -~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~y~~~fQ~~~~~E~~~s~~~~~~~ 190 (322)
T KOG4178|consen 112 -LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTLNVPFPNPKLKPLDSSKAIFGKSYYICLFQEPGKPETELSKDDTEML 190 (322)
T ss_pred -cceeEEEeccchhHHHHHHHHhChhhcceEEEecCCCCCcccchhhhhccccCccceeEeccccCcchhhhccchhHHh
Confidence 479999999999999999998 9999999998875433 0000000 000000
Q ss_pred --h----------------------hhhhh-------------cC--C-hhhhhhcCc--ccccCCCCCCEEEEEeCCCC
Q 004816 620 --R----------------------YIDNL-------------VG--S-EKDYYEKSP--INFVDKFSCPIILFQGLEDK 657 (729)
Q Consensus 620 --~----------------------~~~~~-------------~~--~-~~~~~~~sp--~~~~~~i~~PvL~i~G~~D~ 657 (729)
. ..+.- .+ + .+.+..+.+ .-...++++|++++.|.+|.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g~~gplNyyrn~~r~w~a~~~~~~~i~iPv~fi~G~~D~ 270 (322)
T KOG4178|consen 191 VKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDGFTGPLNYYRNFRRNWEAAPWALAKITIPVLFIWGDLDP 270 (322)
T ss_pred HHhhhccccCCccccCCCCCCccchhhHHHHHHHHhccccccccccchhhHHHhhCchhccccccccccceEEEEecCcc
Confidence 0 00000 00 0 111122221 22355788999999999999
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 658 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 658 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+.++....+.+++.-- .-.+.++++|+||. ...+...+..+.++.|+++..
T Consensus 271 v~~~p~~~~~~rk~vp--~l~~~vv~~~~gH~-vqqe~p~~v~~~i~~f~~~~~ 321 (322)
T KOG4178|consen 271 VLPYPIFGELYRKDVP--RLTERVVIEGIGHF-VQQEKPQEVNQAILGFINSFS 321 (322)
T ss_pred cccchhHHHHHHHhhc--cccceEEecCCccc-ccccCHHHHHHHHHHHHHhhc
Confidence 9887633333333221 12378899999995 455778899999999998753
No 95
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.54 E-value=1.5e-13 Score=138.14 Aligned_cols=198 Identities=16% Similarity=0.161 Sum_probs=120.7
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 571 (729)
|+||++||.+++ ...|......|+ +||.|+.+|+||.|..... ......+.+++... +..+.+. .+.+
T Consensus 2 ~~vv~~hG~~~~--~~~~~~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~~~ 70 (251)
T TIGR03695 2 PVLVFLHGFLGS--GADWQALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LGIE 70 (251)
T ss_pred CEEEEEcCCCCc--hhhHHHHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cCCC
Confidence 679999997443 345667778887 8999999999986654321 01111234444444 5555444 2457
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhh-----------------h-cchhhhhhhhh-h------
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRA-----------------E-THKFESRYIDN-L------ 625 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~-----------------~-~~~~~~~~~~~-~------ 625 (729)
++.++|||+||.+++.++. +|+.++++++.++...+..... . ...+...+... .
T Consensus 71 ~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (251)
T TIGR03695 71 PFFLVGYSMGGRIALYYALQYPERVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQEGLEAFLDDWYQQPLFASQKN 150 (251)
T ss_pred eEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhcCccHHHHHHhcCceeeeccc
Confidence 8999999999999999998 8999999999887543211000 0 00000000000 0
Q ss_pred cC--------------Ch----hhh------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 626 VG--------------SE----KDY------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 626 ~~--------------~~----~~~------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
.. .. ..+ ...++...+.++++|+|+++|++|..++ +. .+.+.+....++++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~i~g~~D~~~~-~~----~~~~~~~~~~~~~~ 225 (251)
T TIGR03695 151 LPPEQRQALRAKRLANNPEGLAKMLRATGLGKQPSLWPKLQALTIPVLYLCGEKDEKFV-QI----AKEMQKLLPNLTLV 225 (251)
T ss_pred CChHHhHHHHHhcccccchHHHHHHHHhhhhcccchHHHhhCCCCceEEEeeCcchHHH-HH----HHHHHhcCCCCcEE
Confidence 00 00 000 0012223356789999999999997652 22 33344444467899
Q ss_pred EECCCCcccCCcccHHHHHHHHHHHH
Q 004816 682 EYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 682 ~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
++|++||.+.. +...+..+.+.+|+
T Consensus 226 ~~~~~gH~~~~-e~~~~~~~~i~~~l 250 (251)
T TIGR03695 226 IIANAGHNIHL-ENPEAFAKILLAFL 250 (251)
T ss_pred EEcCCCCCcCc-cChHHHHHHHHHHh
Confidence 99999997543 44567777777776
No 96
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.54 E-value=1.8e-13 Score=138.86 Aligned_cols=195 Identities=13% Similarity=0.078 Sum_probs=122.2
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|.||++||.+.+ ...|...+..|.+ .|.|+++|+||.|.+.. +.....+++. +.+.+. ..
T Consensus 12 g~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~vi~~Dl~G~G~S~~---------~~~~~~~~~~---~~l~~~---~~ 73 (256)
T PRK10349 12 GNVHLVLLHGWGLN--AEVWRCIDEELSS-HFTLHLVDLPGFGRSRG---------FGALSLADMA---EAVLQQ---AP 73 (256)
T ss_pred CCCeEEEECCCCCC--hhHHHHHHHHHhc-CCEEEEecCCCCCCCCC---------CCCCCHHHHH---HHHHhc---CC
Confidence 34569999997433 3456777777765 49999999997654321 1112234433 344433 24
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh--------------HHhhh----cchhhhhhhhh-hcCC--
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--------------MLRAE----THKFESRYIDN-LVGS-- 628 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~--------------~~~~~----~~~~~~~~~~~-~~~~-- 628 (729)
+++.++|||+||++++.++. +|++++++|+.++..... .+... .......++.. ....
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTET 153 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhhheEEEecCccceecCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHHHHccCch
Confidence 78999999999999999988 899999999887632110 00000 00000011000 0000
Q ss_pred -------------------h-------hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEE
Q 004816 629 -------------------E-------KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVE 682 (729)
Q Consensus 629 -------------------~-------~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~ 682 (729)
. ..+...+....+.++++|+|+++|++|.++|.+.+..+.+.+. ..++++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~~~~~~~~~~~i~----~~~~~~ 229 (256)
T PRK10349 154 ARQDARALKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPMLDKLWP----HSESYI 229 (256)
T ss_pred HHHHHHHHHHHhhccCCCcHHHHHHHHHHHHhCccHHHHhhcCCCeEEEecCCCccCCHHHHHHHHHhCC----CCeEEE
Confidence 0 0011122223467789999999999999999887776666654 458999
Q ss_pred ECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 683 YEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 683 ~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+|++||.... ++...+.+.+.+|-.
T Consensus 230 i~~~gH~~~~-e~p~~f~~~l~~~~~ 254 (256)
T PRK10349 230 FAKAAHAPFI-SHPAEFCHLLVALKQ 254 (256)
T ss_pred eCCCCCCccc-cCHHHHHHHHHHHhc
Confidence 9999997543 666777777777643
No 97
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.54 E-value=2.4e-13 Score=141.60 Aligned_cols=220 Identities=15% Similarity=0.084 Sum_probs=131.0
Q ss_pred EeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH
Q 004816 462 EFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE 541 (729)
Q Consensus 462 ~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~ 541 (729)
.+... +|.++++..+.+ .+.+.||++||++++... ......+...+|.|+++|+||.|.+...
T Consensus 8 ~~~~~-~~~~l~y~~~g~----------~~~~~lvllHG~~~~~~~---~~~~~~~~~~~~~vi~~D~~G~G~S~~~--- 70 (306)
T TIGR01249 8 YLNVS-DNHQLYYEQSGN----------PDGKPVVFLHGGPGSGTD---PGCRRFFDPETYRIVLFDQRGCGKSTPH--- 70 (306)
T ss_pred eEEcC-CCcEEEEEECcC----------CCCCEEEEECCCCCCCCC---HHHHhccCccCCEEEEECCCCCCCCCCC---
Confidence 44454 677887544321 112458999998655432 1233445567999999999976543211
Q ss_pred hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh----hH-------
Q 004816 542 RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL----SM------- 609 (729)
Q Consensus 542 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~----~~------- 609 (729)
.. ......+|+.+.+..+.+.. +.+++.++||||||++++.++. +|++++++|+.++.... ..
T Consensus 71 ~~---~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~ 145 (306)
T TIGR01249 71 AC---LEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIFLLREKEWSWFYEGGAS 145 (306)
T ss_pred CC---cccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccccCCHHHHHHHHhcchh
Confidence 00 01123456666666665542 3468999999999999999988 99999999988654311 00
Q ss_pred ---------Hhhhc------chhhhhhhhhhcC-C--------------------------------hh---hhhh----
Q 004816 610 ---------LRAET------HKFESRYIDNLVG-S--------------------------------EK---DYYE---- 634 (729)
Q Consensus 610 ---------~~~~~------~~~~~~~~~~~~~-~--------------------------------~~---~~~~---- 634 (729)
+.... ..+...+...... . +. .+..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (306)
T TIGR01249 146 MIYPDAWQRFMDSIPENERNEQLVNAYHDRLQSGDEETKLAAAKAWVDWESTTLLRPINEIVSTAEDFKFSLAFARLENH 225 (306)
T ss_pred hhCHHHHHHHhhhCChhhhhccHHHHHHHHccCCCHHHHHHHHHHHHHHhChhhcCCCCCccccccchHHHHHHHHHHHh
Confidence 00000 0000000000000 0 00 0000
Q ss_pred ------cC-----cccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHH
Q 004816 635 ------KS-----PINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 702 (729)
Q Consensus 635 ------~s-----p~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~ 702 (729)
.. -...+.++ ++|+|++||++|.++|++.+.++++.+. ..++++++++||....+ ..++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~i~~~P~lii~g~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~gH~~~~~----~~~~~ 297 (306)
T TIGR01249 226 YFVNKGFLDVENFILDNISKIRNIPTYIVHGRYDLCCPLQSAWALHKAFP----EAELKVTNNAGHSAFDP----NNLAA 297 (306)
T ss_pred HHHHhchhcCchHHHHhhhhccCCCeEEEecCCCCCCCHHHHHHHHHhCC----CCEEEEECCCCCCCCCh----HHHHH
Confidence 00 01234556 5899999999999999999988888765 45899999999986543 34566
Q ss_pred HHHHHHHHh
Q 004816 703 QMVFFARVV 711 (729)
Q Consensus 703 ~~~fl~~~l 711 (729)
+.+|+..+|
T Consensus 298 i~~~~~~~~ 306 (306)
T TIGR01249 298 LVHALETYL 306 (306)
T ss_pred HHHHHHHhC
Confidence 677776653
No 98
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.54 E-value=9e-14 Score=139.45 Aligned_cols=192 Identities=16% Similarity=0.119 Sum_probs=120.8
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+.. ...|...+..|+ .+|.|+++|+||.|..... ...+.+ ..++.+.+. . .++
T Consensus 5 ~~iv~~HG~~~~--~~~~~~~~~~l~-~~~~vi~~d~~G~G~s~~~---------~~~~~~---~~~~~~~~~--~-~~~ 66 (245)
T TIGR01738 5 VHLVLIHGWGMN--AEVFRCLDEELS-AHFTLHLVDLPGHGRSRGF---------GPLSLA---DAAEAIAAQ--A-PDP 66 (245)
T ss_pred ceEEEEcCCCCc--hhhHHHHHHhhc-cCeEEEEecCCcCccCCCC---------CCcCHH---HHHHHHHHh--C-CCC
Confidence 679999997433 345666667775 4799999999986653211 112233 344444443 2 268
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh---HH--------hhh----c----chhhhhhhh-hhcC----
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS---ML--------RAE----T----HKFESRYID-NLVG---- 627 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~---~~--------~~~----~----~~~~~~~~~-~~~~---- 627 (729)
+.++|||+||++++.++. +|++++++|+.++...+. .+ ... . ......+.. ...+
T Consensus 67 ~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T TIGR01738 67 AIWLGWSLGGLVALHIAATHPDRVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDYQRTIERFLALQTLGTPTA 146 (245)
T ss_pred eEEEEEcHHHHHHHHHHHHCHHhhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcc
Confidence 999999999999999988 899999999886643210 00 000 0 000000000 0000
Q ss_pred ---------------Ch--h-------hhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEE
Q 004816 628 ---------------SE--K-------DYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 628 ---------------~~--~-------~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
.+ . .+...+....+.++++|+|+++|++|..+|++....+.+.+. +++++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~~~~~~~~~~~~~~~----~~~~~~~ 222 (245)
T TIGR01738 147 RQDARALKQTLLARPTPNVQVLQAGLEILATVDLRQPLQNISVPFLRLYGYLDGLVPAKVVPYLDKLAP----HSELYIF 222 (245)
T ss_pred chHHHHHHHHhhccCCCCHHHHHHHHHHhhcccHHHHHhcCCCCEEEEeecCCcccCHHHHHHHHHhCC----CCeEEEe
Confidence 00 0 000111123467899999999999999999988877776654 5689999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHH
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
+++||.... +...++.+.+.+|+
T Consensus 223 ~~~gH~~~~-e~p~~~~~~i~~fi 245 (245)
T TIGR01738 223 AKAAHAPFL-SHAEAFCALLVAFK 245 (245)
T ss_pred CCCCCCccc-cCHHHHHHHHHhhC
Confidence 999997544 56677777777774
No 99
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.53 E-value=2.5e-13 Score=130.67 Aligned_cols=191 Identities=19% Similarity=0.187 Sum_probs=118.4
Q ss_pred EEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCch--hHHHhhccCCCc
Q 004816 473 YAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGR--EFRERLLGRWGI 549 (729)
Q Consensus 473 ~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~--~~~~~~~~~~~~ 549 (729)
.+.+|.|++. +.++.|+||++||.........-......+++ +||+|+.|+......... .|.. .....+.
T Consensus 2 ~Y~lYvP~~~-----~~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~ 75 (220)
T PF10503_consen 2 SYRLYVPPGA-----PRGPVPLVVVLHGCGQSAEDFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGG 75 (220)
T ss_pred cEEEecCCCC-----CCCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCc
Confidence 4678888762 13468999999997443321111112234555 599999998543211112 2222 2223344
Q ss_pred ccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhh-hcC
Q 004816 550 VDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDN-LVG 627 (729)
Q Consensus 550 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~-~~~ 627 (729)
.+...+..+++++..+..+|++||.+.|+|.||+|+..++. +|++|.++...+|..--... ...... ..+.. ...
T Consensus 76 ~d~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~~~~a~-~~~~a~--~~m~~g~~~ 152 (220)
T PF10503_consen 76 GDVAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVPYGCAA-SGASAL--SAMRSGPRP 152 (220)
T ss_pred cchhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccccccccc-CcccHH--HHhhCCCCC
Confidence 56777889999999999999999999999999999999987 99999999988875321100 000000 00000 000
Q ss_pred Chhh-hhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC
Q 004816 628 SEKD-YYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN 674 (729)
Q Consensus 628 ~~~~-~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~ 674 (729)
.+.. .......- ..-..|++++||+.|..|.+.++.++.+++...
T Consensus 153 ~p~~~~~a~~~~g--~~~~~P~~v~hG~~D~tV~~~n~~~~~~q~~~~ 198 (220)
T PF10503_consen 153 APAAAWGARSDAG--AYPGYPRIVFHGTADTTVNPQNADQLVAQWLNV 198 (220)
T ss_pred ChHHHHHhhhhcc--CCCCCCEEEEecCCCCccCcchHHHHHHHHHHc
Confidence 1110 00010000 111359999999999999999999999888763
No 100
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.52 E-value=4e-13 Score=142.57 Aligned_cols=206 Identities=14% Similarity=0.159 Sum_probs=130.5
Q ss_pred CCEEEEEcCCCCCCcc---ccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 492 PPLLVKSHGGPTSEAR---GILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~---~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
.| ||++||-...... .....++.+|+++||.|+++|+||.+. +.. ...+.....+|+.++++++.++.
T Consensus 63 ~p-vl~v~~~~~~~~~~d~~~~~~~~~~L~~~G~~V~~~D~~g~g~---s~~---~~~~~d~~~~~~~~~v~~l~~~~-- 133 (350)
T TIGR01836 63 TP-LLIVYALVNRPYMLDLQEDRSLVRGLLERGQDVYLIDWGYPDR---ADR---YLTLDDYINGYIDKCVDYICRTS-- 133 (350)
T ss_pred Cc-EEEeccccccceeccCCCCchHHHHHHHCCCeEEEEeCCCCCH---HHh---cCCHHHHHHHHHHHHHHHHHHHh--
Confidence 35 8888884221111 123467889999999999999986432 111 11111111355888899998874
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh------h-h------------cc------------h
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR------A-E------------TH------------K 616 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~------~-~------------~~------------~ 616 (729)
+.+++.++|||+||.+++.++. +|++++++|+.++..++.... . . .. .
T Consensus 134 ~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~l~p 213 (350)
T TIGR01836 134 KLDQISLLGICQGGTFSLCYAALYPDKIKNLVTMVTPVDFETPGNMLSNWARHVDIDLAVDTMGNIPGELLNLTFLMLKP 213 (350)
T ss_pred CCCcccEEEECHHHHHHHHHHHhCchheeeEEEeccccccCCCCchhhhhccccCHHHHHHhcCCCCHHHHHHHHHhcCc
Confidence 3468999999999999998887 899999999998876542110 0 0 00 0
Q ss_pred ---hhhhhhh--hhcCChh---hh--------------------------hhcCc----------ccccCCCCCCEEEEE
Q 004816 617 ---FESRYID--NLVGSEK---DY--------------------------YEKSP----------INFVDKFSCPIILFQ 652 (729)
Q Consensus 617 ---~~~~~~~--~~~~~~~---~~--------------------------~~~sp----------~~~~~~i~~PvL~i~ 652 (729)
....+.. ....+++ .| ..... ...+.++++|+|+++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~d~~~~~~~~~~~~~~~~~~~n~l~~g~~~~~~~~~~l~~i~~Pvliv~ 293 (350)
T TIGR01836 214 FSLGYQKYVNLVDILEDERKVENFLRMEKWIFDSPDQAGEAFRQFVKDFYQQNGLINGEVEIGGRKVDLKNIKMPILNIY 293 (350)
T ss_pred chhhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCcCccHHHHHHHHHHHHhcCcccCCeeEECCEEccHHhCCCCeEEEe
Confidence 0000000 0001110 00 00000 112556889999999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc-c-CCcccHHHHHHHHHHHHHH
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-F-RKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~-~~~~~~~~~~~~~~~fl~~ 709 (729)
|++|.++|++.+..+++.+.. .+++++++++ ||. + ..+....+.+..+.+|+.+
T Consensus 294 G~~D~i~~~~~~~~~~~~~~~--~~~~~~~~~~-gH~~~~~~~~~~~~v~~~i~~wl~~ 349 (350)
T TIGR01836 294 AERDHLVPPDASKALNDLVSS--EDYTELSFPG-GHIGIYVSGKAQKEVPPAIGKWLQA 349 (350)
T ss_pred cCCCCcCCHHHHHHHHHHcCC--CCeEEEEcCC-CCEEEEECchhHhhhhHHHHHHHHh
Confidence 999999999999999888764 3568888885 665 2 3334467888999999876
No 101
>COG4099 Predicted peptidase [General function prediction only]
Probab=99.52 E-value=1e-13 Score=132.11 Aligned_cols=208 Identities=21% Similarity=0.280 Sum_probs=136.2
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCC-CEEEEEcCCCCCCccccch------hhhHHHhhCCcEEEEecCCCC
Q 004816 460 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKP-PLLVKSHGGPTSEARGILN------LSIQYWTSRGWAFVDVNYGGS 532 (729)
Q Consensus 460 ~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~-P~vv~~hGg~~~~~~~~~~------~~~~~la~~G~~v~~~d~rGs 532 (729)
.++|.....|.++.+.+|.|++.. +++++ |+||++||++.......-. ..+-..-+-++-|++|.|.-
T Consensus 162 a~~f~d~~tgneLkYrly~Pkdy~----pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~~- 236 (387)
T COG4099 162 AVEFYDESTGNELKYRLYTPKDYA----PDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYNP- 236 (387)
T ss_pred heEeeccccCceeeEEEecccccC----CCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEcccccc-
Confidence 344444337899999999998844 46776 9999999975432222100 01111112245667766531
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~ 610 (729)
-+.... ............+++ -|.+++.+|.+||-++|.|+||+.++.++. +|+.|++++.++|-.|-..
T Consensus 237 -----if~d~e--~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d~v~- 308 (387)
T COG4099 237 -----IFADSE--EKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGDRVY- 308 (387)
T ss_pred -----cccccc--cccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCchhh-
Confidence 000000 011122444555555 777889999999999999999999999988 9999999999998655211
Q ss_pred hhhcchhhhhhhhhhcCChhhhhhcCcccccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC---CC
Q 004816 611 RAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE---GE 686 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~---~~ 686 (729)
+++.+ +.|+.++|+.+|+++|.+++.-+++.|+..+.++.+..|. -.
T Consensus 309 -----------------------------lv~~lk~~piWvfhs~dDkv~Pv~nSrv~y~~lk~~~~kv~Ytaf~~g~~~ 359 (387)
T COG4099 309 -----------------------------LVRTLKKAPIWVFHSSDDKVIPVSNSRVLYERLKALDRKVNYTAFLEGTTV 359 (387)
T ss_pred -----------------------------hhhhhccCceEEEEecCCCccccCcceeehHHHHhhccccchhhhhhcccc
Confidence 11222 4799999999999999999999999999998888777766 22
Q ss_pred CcccCCcccHHH--HHHHHHHHHHH
Q 004816 687 QHGFRKAENIKF--TLEQQMVFFAR 709 (729)
Q Consensus 687 gH~~~~~~~~~~--~~~~~~~fl~~ 709 (729)
.|+......+.. -...+++|+-+
T Consensus 360 ~eG~d~~g~w~atyn~~eaieWLl~ 384 (387)
T COG4099 360 LEGVDHSGVWWATYNDAEAIEWLLK 384 (387)
T ss_pred ccccCCCCcceeecCCHHHHHHHHh
Confidence 344333222222 22356677654
No 102
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.51 E-value=1.7e-12 Score=129.72 Aligned_cols=209 Identities=14% Similarity=0.206 Sum_probs=132.2
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCc--cccchhhhHHHhhCCcEEEEecCCCCCCCchh
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEA--RGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~--~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~ 538 (729)
+.+... ...+.++++.|.+ .++.|+||++||...... ...+...+..|+++||.|+.+|+||.|.....
T Consensus 3 ~~l~~~--~g~~~~~~~~p~~-------~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~Gy~Vl~~Dl~G~G~S~g~ 73 (266)
T TIGR03101 3 FFLDAP--HGFRFCLYHPPVA-------VGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAGGFGVLQIDLYGCGDSAGD 73 (266)
T ss_pred EEecCC--CCcEEEEEecCCC-------CCCceEEEEECCCcccccchhHHHHHHHHHHHHCCCEEEEECCCCCCCCCCc
Confidence 455554 4446677787754 234689999999743222 22345567889999999999999986654322
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchh
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF 617 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~ 617 (729)
... ..+. ...+|+..+++++.+.+ .++++++|||+||.+++.++. +|++++++|+.+|+.+...+....-.+
T Consensus 74 ~~~---~~~~-~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~~~l~~~lrl 146 (266)
T TIGR03101 74 FAA---ARWD-VWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGKQQLQQFLRL 146 (266)
T ss_pred ccc---CCHH-HHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchHHHHHHHHHH
Confidence 111 1111 12688999999998763 468999999999999998887 899999999999988765544331111
Q ss_pred hh-------h-------hhhhhc--------C---Ch---hhhhhcCcccccCCCCCCEEEEEeCCC-CCCChHHHHHHH
Q 004816 618 ES-------R-------YIDNLV--------G---SE---KDYYEKSPINFVDKFSCPIILFQGLED-KVVPPDQARKIY 668 (729)
Q Consensus 618 ~~-------~-------~~~~~~--------~---~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D-~~vp~~~~~~~~ 668 (729)
.. . ....+. | .+ ..+...+...... -..++|++.-..+ .--......++.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ 225 (266)
T TIGR03101 147 RLVARRLGGESAEASNSLRERLLAGEDVEIAGYELAPALASDLDQRQLAPAVP-KNCPVHWFEVRPEEGATLSPVFSRLG 225 (266)
T ss_pred HHHHHhccccccccchhHHhhccCCCeEEEeceecCHHHHHHHHhcccCCCCC-CCCceEEEEeccccCCCCCHHHHHHH
Confidence 00 0 000000 0 00 0111111110111 1456788766432 223345678899
Q ss_pred HHHHhCCCCEEEEEECCC
Q 004816 669 KALKENGLPVALVEYEGE 686 (729)
Q Consensus 669 ~~l~~~g~~~~~~~~~~~ 686 (729)
+.+++.|+.++...|+|.
T Consensus 226 ~~~~~~g~~v~~~~~~~~ 243 (266)
T TIGR03101 226 EQWVQSGVEVTVDLVPGP 243 (266)
T ss_pred HHHHHcCCeEeeeecCCc
Confidence 999999999999999988
No 103
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.51 E-value=2.1e-12 Score=132.03 Aligned_cols=243 Identities=17% Similarity=0.191 Sum_probs=158.6
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
-+...++.+ ||..+...+..+...... +.....|+||++||-.++........++....++||.|+++|.||.+|.--
T Consensus 93 y~Reii~~~-DGG~~~lDW~~~~~~~~~-~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG~~g~~L 170 (409)
T KOG1838|consen 93 YTREIIKTS-DGGTVTLDWVENPDSRCR-TDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRGLGGSKL 170 (409)
T ss_pred ceeEEEEeC-CCCEEEEeeccCcccccC-CCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCCCCCCcc
Confidence 355556666 888888777766552111 123467999999998777777666778888889999999999999665332
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccccChh---HHh
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLS---MLR 611 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~d~~---~~~ 611 (729)
.-.. -+.....+|+.++++++.++.. ..++.++|.|+||.+...++. ....+.++++++-..|.. ...
T Consensus 171 tTpr----~f~ag~t~Dl~~~v~~i~~~~P--~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~~~~~~~ 244 (409)
T KOG1838|consen 171 TTPR----LFTAGWTEDLREVVNHIKKRYP--QAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLLAASRSI 244 (409)
T ss_pred CCCc----eeecCCHHHHHHHHHHHHHhCC--CCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhhhhhhHH
Confidence 2111 1122337999999999999843 458999999999999988886 222355555555444431 110
Q ss_pred hh-----------------------------------------cchhhhhhhhhhcC---ChhhhhhcCcccccCCCCCC
Q 004816 612 AE-----------------------------------------THKFESRYIDNLVG---SEKDYYEKSPINFVDKFSCP 647 (729)
Q Consensus 612 ~~-----------------------------------------~~~~~~~~~~~~~~---~~~~~~~~sp~~~~~~i~~P 647 (729)
.. ...+...+.....| -.+.|...|+..++++|++|
T Consensus 245 ~~~~~~~~y~~~l~~~l~~~~~~~r~~~~~~~vd~d~~~~~~SvreFD~~~t~~~~gf~~~deYY~~aSs~~~v~~I~VP 324 (409)
T KOG1838|consen 245 ETPLYRRFYNRALTLNLKRIVLRHRHTLFEDPVDFDVILKSRSVREFDEALTRPMFGFKSVDEYYKKASSSNYVDKIKVP 324 (409)
T ss_pred hcccchHHHHHHHHHhHHHHHhhhhhhhhhccchhhhhhhcCcHHHHHhhhhhhhcCCCcHHHHHhhcchhhhccccccc
Confidence 00 00011111111111 13567888999999999999
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc-cCCc--ccHHHHHHH-HHHHHHHHh
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG-FRKA--ENIKFTLEQ-QMVFFARVV 711 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~-~~~~--~~~~~~~~~-~~~fl~~~l 711 (729)
+|+|++.+|+++|.+ +.-. +..+ .+..+-+++-.-+||- |... .+...++++ +.+||....
T Consensus 325 ~L~ina~DDPv~p~~-~ip~-~~~~-~np~v~l~~T~~GGHlgfleg~~p~~~~w~~~~l~ef~~~~~ 389 (409)
T KOG1838|consen 325 LLCINAADDPVVPEE-AIPI-DDIK-SNPNVLLVITSHGGHLGFLEGLWPSARTWMDKLLVEFLGNAI 389 (409)
T ss_pred EEEEecCCCCCCCcc-cCCH-HHHh-cCCcEEEEEeCCCceeeeeccCCCccchhHHHHHHHHHHHHH
Confidence 999999999999874 2222 2222 3457788888888894 3221 144556666 788887765
No 104
>COG0400 Predicted esterase [General function prediction only]
Probab=99.51 E-value=4.4e-13 Score=127.46 Aligned_cols=186 Identities=21% Similarity=0.179 Sum_probs=127.4
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHH-hhccCCCc----ccHHHHHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRE-RLLGRWGI----VDVNDCCSCATFLV 563 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~-~~~~~~~~----~~~~D~~~~~~~l~ 563 (729)
+...|+||++||.+ .+...+-...+.... .+.++.+.-+-.-..+..|.. ...+.+-. ...+.+.+.++.+.
T Consensus 15 ~p~~~~iilLHG~G--gde~~~~~~~~~~~P-~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~~~ 91 (207)
T COG0400 15 DPAAPLLILLHGLG--GDELDLVPLPELILP-NATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEELA 91 (207)
T ss_pred CCCCcEEEEEecCC--CChhhhhhhhhhcCC-CCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHHHH
Confidence 44568999999973 344444443333333 355555543322111222111 11111111 11344556667777
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
++..+|.+|++++|+|.|+.+++.++. ++..++++++.+|..-+... ....
T Consensus 92 ~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~~~----------------------------~~~~ 143 (207)
T COG0400 92 EEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLEPE----------------------------LLPD 143 (207)
T ss_pred HHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCCCc----------------------------cccc
Confidence 777889999999999999999999987 99999999999986533210 0011
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.-.+|+|++||+.|++||...+.++.+.|++.|.+++.++++ .||.+.. +.++.+.+|+.+.+
T Consensus 144 ~~~~pill~hG~~Dpvvp~~~~~~l~~~l~~~g~~v~~~~~~-~GH~i~~-----e~~~~~~~wl~~~~ 206 (207)
T COG0400 144 LAGTPILLSHGTEDPVVPLALAEALAEYLTASGADVEVRWHE-GGHEIPP-----EELEAARSWLANTL 206 (207)
T ss_pred cCCCeEEEeccCcCCccCHHHHHHHHHHHHHcCCCEEEEEec-CCCcCCH-----HHHHHHHHHHHhcc
Confidence 225799999999999999999999999999999999999999 7998753 55667777887754
No 105
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.50 E-value=5.7e-13 Score=143.21 Aligned_cols=197 Identities=13% Similarity=0.157 Sum_probs=122.8
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.|.||++||.++. ...|......|.. +|.|+++|++|.|.+... ....+.+++.+.+..+++. ++..
T Consensus 131 ~~~vl~~HG~~~~--~~~~~~~~~~l~~-~~~v~~~d~~g~G~s~~~--------~~~~~~~~~~~~~~~~~~~--~~~~ 197 (371)
T PRK14875 131 GTPVVLIHGFGGD--LNNWLFNHAALAA-GRPVIALDLPGHGASSKA--------VGAGSLDELAAAVLAFLDA--LGIE 197 (371)
T ss_pred CCeEEEECCCCCc--cchHHHHHHHHhc-CCEEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHh--cCCc
Confidence 4789999997443 3445555666654 599999999987654321 1123356666666666555 4557
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh----HH----hhh--cchh--------------hhhhhhhhc
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS----ML----RAE--THKF--------------ESRYIDNLV 626 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~----~~----~~~--~~~~--------------~~~~~~~~~ 626 (729)
++.++|||+||++++.++. +|++++++|+.++..... .+ ... ...+ ...+.....
T Consensus 198 ~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (371)
T PRK14875 198 RAHLVGHSMGGAVALRLAARAPQRVASLTLIAPAGLGPEINGDYIDGFVAAESRRELKPVLELLFADPALVTRQMVEDLL 277 (371)
T ss_pred cEEEEeechHHHHHHHHHHhCchheeEEEEECcCCcCcccchhHHHHhhcccchhHHHHHHHHHhcChhhCCHHHHHHHH
Confidence 8999999999999998887 888999999988753211 00 000 0000 000000000
Q ss_pred -----CC-hhhh------------hhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 627 -----GS-EKDY------------YEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 627 -----~~-~~~~------------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
.. ...+ ...+....+.++++|+|+++|++|..+|++++..+. ..+++++++++||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvlii~g~~D~~vp~~~~~~l~-------~~~~~~~~~~~gH 350 (371)
T PRK14875 278 KYKRLDGVDDALRALADALFAGGRQRVDLRDRLASLAIPVLVIWGEQDRIIPAAHAQGLP-------DGVAVHVLPGAGH 350 (371)
T ss_pred HHhccccHHHHHHHHHHHhccCcccchhHHHHHhcCCCCEEEEEECCCCccCHHHHhhcc-------CCCeEEEeCCCCC
Confidence 00 0000 001122246678999999999999999987765432 2468899999999
Q ss_pred ccCCcccHHHHHHHHHHHHHH
Q 004816 689 GFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl~~ 709 (729)
... -++.....+.+.+||++
T Consensus 351 ~~~-~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 351 MPQ-MEAAADVNRLLAEFLGK 370 (371)
T ss_pred Chh-hhCHHHHHHHHHHHhcc
Confidence 754 34556677777777764
No 106
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.49 E-value=2e-12 Score=133.18 Aligned_cols=198 Identities=17% Similarity=0.111 Sum_probs=121.1
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+. ....|......|. ++|.|+++|+||.|.++... . .....+++.+.+..+++.. +.++
T Consensus 35 ~~iv~lHG~~~--~~~~~~~~~~~l~-~~~~vi~~D~~G~G~S~~~~------~-~~~~~~~~~~~~~~~~~~~--~~~~ 102 (286)
T PRK03204 35 PPILLCHGNPT--WSFLYRDIIVALR-DRFRCVAPDYLGFGLSERPS------G-FGYQIDEHARVIGEFVDHL--GLDR 102 (286)
T ss_pred CEEEEECCCCc--cHHHHHHHHHHHh-CCcEEEEECCCCCCCCCCCC------c-cccCHHHHHHHHHHHHHHh--CCCC
Confidence 67999999853 2234555666665 46999999999876543211 0 0123677777777776653 4478
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-----HHhh----hcch---------hhhhhhhhhc--C-Ch-
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRA----ETHK---------FESRYIDNLV--G-SE- 629 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-----~~~~----~~~~---------~~~~~~~~~~--~-~~- 629 (729)
+.++|||+||.+++.++. +|++++++|+.++..-.. .... .... +...++.... . ..
T Consensus 103 ~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (286)
T PRK03204 103 YLSMGQDWGGPISMAVAVERADRVRGVVLGNTWFWPADTLAMKAFSRVMSSPPVQYAILRRNFFVERLIPAGTEHRPSSA 182 (286)
T ss_pred EEEEEECccHHHHHHHHHhChhheeEEEEECccccCCCchhHHHHHHHhccccchhhhhhhhHHHHHhccccccCCCCHH
Confidence 999999999999999887 999999999876643100 0000 0000 0000000000 0 00
Q ss_pred --hhhh-----------------hc---Cc-ccc----cC--CCCCCEEEEEeCCCCCCChH-HHHHHHHHHHhCCCCEE
Q 004816 630 --KDYY-----------------EK---SP-INF----VD--KFSCPIILFQGLEDKVVPPD-QARKIYKALKENGLPVA 679 (729)
Q Consensus 630 --~~~~-----------------~~---sp-~~~----~~--~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l~~~g~~~~ 679 (729)
..+. .. .+ +.. +. .+++|+|+++|++|..+++. ..+.+.+.+. ..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PtliI~G~~D~~~~~~~~~~~~~~~ip----~~~ 258 (286)
T PRK03204 183 VMAHYRAVQPNAAARRGVAEMPKQILAARPLLARLAREVPATLGTKPTLLVWGMKDVAFRPKTILPRLRATFP----DHV 258 (286)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcchhhHHHHHhhhhhhhhcCCCCeEEEecCCCcccCcHHHHHHHHHhcC----CCe
Confidence 0000 00 00 000 11 12799999999999988665 3555555554 358
Q ss_pred EEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 680 LVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 680 ~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
+++++++||... .+..+++.+.+.+||
T Consensus 259 ~~~i~~aGH~~~-~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 259 LVELPNAKHFIQ-EDAPDRIAAAIIERF 285 (286)
T ss_pred EEEcCCCccccc-ccCHHHHHHHHHHhc
Confidence 999999999754 366778888888886
No 107
>PLN02578 hydrolase
Probab=99.47 E-value=1.3e-12 Score=138.82 Aligned_cols=196 Identities=17% Similarity=0.215 Sum_probs=121.0
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc-cHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.||++||.+.+ ...|......|+ .+|.|+++|++|.|.+..... .+... ..+|+.+.++.+. .+
T Consensus 87 ~~vvliHG~~~~--~~~w~~~~~~l~-~~~~v~~~D~~G~G~S~~~~~-----~~~~~~~a~~l~~~i~~~~------~~ 152 (354)
T PLN02578 87 LPIVLIHGFGAS--AFHWRYNIPELA-KKYKVYALDLLGFGWSDKALI-----EYDAMVWRDQVADFVKEVV------KE 152 (354)
T ss_pred CeEEEECCCCCC--HHHHHHHHHHHh-cCCEEEEECCCCCCCCCCccc-----ccCHHHHHHHHHHHHHHhc------cC
Confidence 458899997443 344555556665 469999999998776544311 11110 1344555554442 36
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh------------------H-Hhhhcc----hhh---------
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS------------------M-LRAETH----KFE--------- 618 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~------------------~-~~~~~~----~~~--------- 618 (729)
++.++|||+||++++.++. +|++++++|+.++...+. . +..... ...
T Consensus 153 ~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (354)
T PLN02578 153 PAVLVGNSLGGFTALSTAVGYPELVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRVVLGFLFWQAK 232 (354)
T ss_pred CeEEEEECHHHHHHHHHHHhChHhcceEEEECCCccccccccccccccccccchhhHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 8999999999999999998 999999999886532110 0 000000 000
Q ss_pred -----hhhhhhhcC------------------Ch---hhhh-----------hcCcccccCCCCCCEEEEEeCCCCCCCh
Q 004816 619 -----SRYIDNLVG------------------SE---KDYY-----------EKSPINFVDKFSCPIILFQGLEDKVVPP 661 (729)
Q Consensus 619 -----~~~~~~~~~------------------~~---~~~~-----------~~sp~~~~~~i~~PvL~i~G~~D~~vp~ 661 (729)
......... ++ +.+. ..+....++++++|+|+++|++|..+|.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~~v~~ 312 (354)
T PLN02578 233 QPSRIESVLKSVYKDKSNVDDYLVESITEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDPWVGP 312 (354)
T ss_pred CHHHHHHHHHHhcCCcccCCHHHHHHHHhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCCCCCH
Confidence 000000000 00 0000 0111223567899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
+.+.++.+.+. +.+++++ ++||... .+...++.+.+.+|+.
T Consensus 313 ~~~~~l~~~~p----~a~l~~i-~~GH~~~-~e~p~~~~~~I~~fl~ 353 (354)
T PLN02578 313 AKAEKIKAFYP----DTTLVNL-QAGHCPH-DEVPEQVNKALLEWLS 353 (354)
T ss_pred HHHHHHHHhCC----CCEEEEe-CCCCCcc-ccCHHHHHHHHHHHHh
Confidence 98888877764 3477777 5899754 4677788889999875
No 108
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=99.47 E-value=1.7e-12 Score=119.89 Aligned_cols=166 Identities=19% Similarity=0.254 Sum_probs=124.8
Q ss_pred hhhhHHHhhCCcEEEEecC-CC---CCCCch----hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHH
Q 004816 511 NLSIQYWTSRGWAFVDVNY-GG---STGYGR----EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG 582 (729)
Q Consensus 511 ~~~~~~la~~G~~v~~~d~-rG---s~g~g~----~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG 582 (729)
+..+..++..||.|+.||+ || +.+.-. .|.+... ...-..|+...++||..++ +..+|+++|+++||
T Consensus 57 r~~Adk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~---~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGa 131 (242)
T KOG3043|consen 57 REGADKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMKGHS---PPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGA 131 (242)
T ss_pred HHHHHHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHhcCC---cccchhHHHHHHHHHHHcC--CcceeeEEEEeecc
Confidence 4567788899999999995 44 222111 1222221 1223689999999999774 46899999999999
Q ss_pred HHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCCh
Q 004816 583 YTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPP 661 (729)
Q Consensus 583 ~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~ 661 (729)
-++..+.. .+ .|.++|+.+|..-- ...+.++++|+|++.++.|..+|+
T Consensus 132 k~vv~~~~~~~-~f~a~v~~hps~~d------------------------------~~D~~~vk~Pilfl~ae~D~~~p~ 180 (242)
T KOG3043|consen 132 KVVVTLSAKDP-EFDAGVSFHPSFVD------------------------------SADIANVKAPILFLFAELDEDVPP 180 (242)
T ss_pred eEEEEeeccch-hheeeeEecCCcCC------------------------------hhHHhcCCCCEEEEeecccccCCH
Confidence 98877776 55 89999999885310 122457789999999999999999
Q ss_pred HHHHHHHHHHHhCCC-CEEEEEECCCCcccCC-------cc---cHHHHHHHHHHHHHHHhC
Q 004816 662 DQARKIYKALKENGL-PVALVEYEGEQHGFRK-------AE---NIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~-~~~~~~~~~~gH~~~~-------~~---~~~~~~~~~~~fl~~~l~ 712 (729)
....++-++|+++.. ..++.+|++.+|+|.. ++ ..++.++.++.||.+++.
T Consensus 181 ~~v~~~ee~lk~~~~~~~~v~~f~g~~HGf~~~r~~~~~Ped~~~~eea~~~~~~Wf~~y~~ 242 (242)
T KOG3043|consen 181 KDVKAWEEKLKENPAVGSQVKTFSGVGHGFVARRANISSPEDKKAAEEAYQRFISWFKHYLA 242 (242)
T ss_pred HHHHHHHHHHhcCcccceeEEEcCCccchhhhhccCCCChhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999988643 3579999999999852 22 345788899999998863
No 109
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.45 E-value=2e-11 Score=124.25 Aligned_cols=301 Identities=12% Similarity=0.130 Sum_probs=163.6
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
.-...|.+ |+++.|...+ .|+..||.++.. +++.+|||..+.. ...+..+++.++.++|... ..+|+.
T Consensus 38 F~~~~ft~dG~kllF~s~~---dg~~nly~lDL~-t~~i~QLTdg~g~------~~~g~~~s~~~~~~~Yv~~-~~~l~~ 106 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDF---DGNRNLYLLDLA-TGEITQLTDGPGD------NTFGGFLSPDDRALYYVKN-GRSLRR 106 (386)
T ss_dssp TTS--B-TTS-EEEEEE-T---TSS-EEEEEETT-T-EEEE---SS-B-------TTT-EE-TTSSEEEEEET-TTEEEE
T ss_pred ecCCCcCCCCCEEEEEecc---CCCcceEEEEcc-cCEEEECccCCCC------CccceEEecCCCeEEEEEC-CCeEEE
Confidence 45678898 8888886553 466789999988 4589999975410 1124455656667777753 247999
Q ss_pred EeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC---C----------CCcceEEEEEEcCCCceEEe
Q 004816 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD---A----------LNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~---~----------~~~~~~l~~~dl~~g~~~~l 236 (729)
+|+++ ++.+.|-..++. -..+.......|++.++.+.....+. + ....+.|+.||+.+|+.+.+
T Consensus 107 vdL~T--~e~~~vy~~p~~-~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v 183 (386)
T PF14583_consen 107 VDLDT--LEERVVYEVPDD-WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVV 183 (386)
T ss_dssp EETTT----EEEEEE--TT-EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEE
T ss_pred EECCc--CcEEEEEECCcc-cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEE
Confidence 99998 777666554211 11223333466899988876443321 1 12357899999999999999
Q ss_pred eeCCCeeeeeeeCC-CCCeEEEEEecCCCCCCCC--cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EE
Q 004816 237 VSGSDFYAFPRMDP-RGERMAWIEWHHPNMPWDK--AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 312 (729)
Q Consensus 237 t~~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~--~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~ 312 (729)
.....+...+.+|| |...|.|+-- .||.. .+||+++.+ ++.. ..+....+. ..+..--|+|||. |+
T Consensus 184 ~~~~~wlgH~~fsP~dp~li~fCHE----Gpw~~Vd~RiW~i~~d-g~~~---~~v~~~~~~--e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 184 FEDTDWLGHVQFSPTDPTLIMFCHE----GPWDLVDQRIWTINTD-GSNV---KKVHRRMEG--ESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEESS-EEEEEEETTEEEEEEEEE-----S-TTTSS-SEEEEETT-S------EESS---TT--EEEEEEEE-TTSS-EE
T ss_pred EecCccccCcccCCCCCCEEEEecc----CCcceeceEEEEEEcC-CCcc---eeeecCCCC--cccccccccCCCCEEE
Confidence 88888889999999 7888888762 24554 479999977 3333 222222212 5666778999999 88
Q ss_pred EEEecCCC-ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE--------------CCe
Q 004816 313 FVTDRKNG-FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ--------------NGR 377 (729)
Q Consensus 313 ~~~~~~~g-~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~--------------~g~ 377 (729)
|......+ ...|+.+|+++++.+.+...+... +|..+. |++ +++--.. .+.
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~------------H~~ss~-Dg~-L~vGDG~d~p~~v~~~~~~~~~~~ 319 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCS------------HFMSSP-DGK-LFVGDGGDAPVDVADAGGYKIEND 319 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE-SEE------------EEEE-T-TSS-EEEEEE------------------
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCCcee------------eeEEcC-CCC-EEEecCCCCCccccccccceecCC
Confidence 87764233 457999999999877765332110 111100 222 2221111 123
Q ss_pred EEEEEEECCCCceEeeccCCcc-----------eEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 378 SYLGILDDFGHSLSLLDIPFTD-----------IDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt~~~~~-----------v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
..||+++++.+..+.|...... .... .+++++.+++.++..++..||++++.
T Consensus 320 p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 320 PWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp -EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE--
T ss_pred cEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEeCc
Confidence 4788899988887766543211 1111 45566677778888999999999865
No 110
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.45 E-value=2.4e-12 Score=124.32 Aligned_cols=229 Identities=23% Similarity=0.271 Sum_probs=145.6
Q ss_pred EEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhh-CCcEEEEecCCCCCCCchh
Q 004816 460 LIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RGWAFVDVNYGGSTGYGRE 538 (729)
Q Consensus 460 ~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~ 538 (729)
..++.. +|....+++|.|... .++.|+||++||+.++........-...+++ .||.|+.|| |+.+.
T Consensus 37 ~~s~~~--~g~~r~y~l~vP~g~------~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~gFlV~yPd-----g~~~~ 103 (312)
T COG3509 37 VASFDV--NGLKRSYRLYVPPGL------PSGAPLVVVLHGSGGSGAGQLHGTGWDALADREGFLVAYPD-----GYDRA 103 (312)
T ss_pred cccccc--CCCccceEEEcCCCC------CCCCCEEEEEecCCCChHHhhcccchhhhhcccCcEEECcC-----ccccc
Confidence 334544 688899999999873 3455999999997443222111111234444 599999995 33344
Q ss_pred HHHhhccCC--------CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH
Q 004816 539 FRERLLGRW--------GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM 609 (729)
Q Consensus 539 ~~~~~~~~~--------~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~ 609 (729)
|.......| +..++..+.+++..|+.+..+|++||.|.|.|.||.|+.+++. +|+.|.++..+++..-...
T Consensus 104 wn~~~~~~~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~~~~~ 183 (312)
T COG3509 104 WNANGCGNWFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLLALGV 183 (312)
T ss_pred cCCCcccccCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeecccCCCc
Confidence 433333332 3446788899999999999999999999999999999999998 9999999988887642100
Q ss_pred HhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC---------------
Q 004816 610 LRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN--------------- 674 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~--------------- 674 (729)
-.. ..+-+..+. .--..+|......=..| |-+|..|..++..+..+.++.+...
T Consensus 184 a~~-----~~rp~~~m~----~~G~~Dp~~p~~gG~~~--~g~g~~~~~v~~~~~~~~Waa~ng~~~~p~~~~~~~~~~~ 252 (312)
T COG3509 184 ACT-----PPRPVSVMA----FHGTADPLNPYHGGGVP--IGRGQRDGVVSAADLAARWAAVNGCQAGPDTAELPDVGDG 252 (312)
T ss_pred ccC-----CCCchhHHH----hcCCCCCCCCCCCCCcc--cccccccccccHHHHHHHHHHhcCCCCCCcccccCCCccc
Confidence 000 000001000 00011222111111233 7888888888777666666665322
Q ss_pred --------CCCEEEEEECCCCcccCCccc-----------HHHHHHHHHHHHHHHhC
Q 004816 675 --------GLPVALVEYEGEQHGFRKAEN-----------IKFTLEQQMVFFARVVG 712 (729)
Q Consensus 675 --------g~~~~~~~~~~~gH~~~~~~~-----------~~~~~~~~~~fl~~~l~ 712 (729)
+..++++.+.+.||.+..... -....+.|.+||..+-.
T Consensus 253 ~~~~~~~~~~~V~~y~i~g~GH~wp~~~~~~~~~~g~~t~~~dat~~iw~Ff~~~~R 309 (312)
T COG3509 253 TDYDTCDGNARVELYTIDGGGHTWPGGTQYGPAALGMSTRGFDATERIWRFFRQHRR 309 (312)
T ss_pred ceeeccCCCcceEEEEEeCCcccCcCCCCCCcccccccccCcchHHHHHHHHHhccc
Confidence 246889999999998764211 12467889999998765
No 111
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.45 E-value=7.3e-12 Score=127.71 Aligned_cols=201 Identities=13% Similarity=0.134 Sum_probs=117.7
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
+..|.||++||.... ...|......|.++||.|+++|++|.+..... . . ....+++....+..+++... .
T Consensus 16 ~~~p~vvliHG~~~~--~~~w~~~~~~L~~~g~~vi~~dl~g~G~s~~~---~-~---~~~~~~~~~~~l~~~i~~l~-~ 85 (273)
T PLN02211 16 RQPPHFVLIHGISGG--SWCWYKIRCLMENSGYKVTCIDLKSAGIDQSD---A-D---SVTTFDEYNKPLIDFLSSLP-E 85 (273)
T ss_pred CCCCeEEEECCCCCC--cCcHHHHHHHHHhCCCEEEEecccCCCCCCCC---c-c---cCCCHHHHHHHHHHHHHhcC-C
Confidence 345889999997443 45677788888889999999999976532111 0 0 11224444433333333311 2
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC------hhHHhhhcchh------------------------h
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD------LSMLRAETHKF------------------------E 618 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d------~~~~~~~~~~~------------------------~ 618 (729)
.+++.++||||||.+++.++. +|++++++|..++... ...+....... .
T Consensus 86 ~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (273)
T PLN02211 86 NEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAATMLKLGFQTDEDMKDGVPDLSEFGDVYELGFGLGPDQPPTSAIIK 165 (273)
T ss_pred CCCEEEEEECchHHHHHHHHHhChhheeEEEEeccccCCCCCCHHHHHhccccchhhhccceeeeeccCCCCCCceeeeC
Confidence 378999999999999999988 9999999999876421 10000000000 0
Q ss_pred hhhhhhh-cC-Chh---h-hhh------c----Ccc--cccCCC-CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEE
Q 004816 619 SRYIDNL-VG-SEK---D-YYE------K----SPI--NFVDKF-SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVA 679 (729)
Q Consensus 619 ~~~~~~~-~~-~~~---~-~~~------~----sp~--~~~~~i-~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~ 679 (729)
..+.... .. .++ . +.. . ++. ....++ ++|+|+|.|++|..+|++.++.+.+.+.. .+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vP~l~I~g~~D~~ip~~~~~~m~~~~~~----~~ 241 (273)
T PLN02211 166 KEFRRKILYQMSPQEDSTLAAMLLRPGPILALRSARFEEETGDIDKVPRVYIKTLHDHVVKPEQQEAMIKRWPP----SQ 241 (273)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHhcCCcCccccccccccccccccCccceEEEEeCCCCCCCHHHHHHHHHhCCc----cE
Confidence 0000000 00 000 0 000 0 010 112344 68999999999999999999888877652 27
Q ss_pred EEEECCCCcccCCcccHHHHHHHHHHH
Q 004816 680 LVEYEGEQHGFRKAENIKFTLEQQMVF 706 (729)
Q Consensus 680 ~~~~~~~gH~~~~~~~~~~~~~~~~~f 706 (729)
++.++ +||.. .-+...+..+.+.+.
T Consensus 242 ~~~l~-~gH~p-~ls~P~~~~~~i~~~ 266 (273)
T PLN02211 242 VYELE-SDHSP-FFSTPFLLFGLLIKA 266 (273)
T ss_pred EEEEC-CCCCc-cccCHHHHHHHHHHH
Confidence 77886 79963 223444444444444
No 112
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.44 E-value=3.3e-12 Score=128.33 Aligned_cols=191 Identities=13% Similarity=0.042 Sum_probs=114.4
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.||++||.+++. ..|......| .+|.|+++|+||.|.+...- . ...++....+..+++.. +.++
T Consensus 3 p~vvllHG~~~~~--~~w~~~~~~l--~~~~vi~~D~~G~G~S~~~~---~------~~~~~~~~~l~~~l~~~--~~~~ 67 (242)
T PRK11126 3 PWLVFLHGLLGSG--QDWQPVGEAL--PDYPRLYIDLPGHGGSAAIS---V------DGFADVSRLLSQTLQSY--NILP 67 (242)
T ss_pred CEEEEECCCCCCh--HHHHHHHHHc--CCCCEEEecCCCCCCCCCcc---c------cCHHHHHHHHHHHHHHc--CCCC
Confidence 6799999985544 4566666766 37999999999876543211 0 12334333333333332 3479
Q ss_pred EEEEEcChHHHHHHHHHh-CCC-cceEEEEeccccChhHH------------h-hhc-----chhhhhhhh-hh---cCC
Q 004816 573 LCITGGSAGGYTTLAALA-FRD-TFKAGASLYGVADLSML------------R-AET-----HKFESRYID-NL---VGS 628 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~-~~~a~v~~~~~~d~~~~------------~-~~~-----~~~~~~~~~-~~---~~~ 628 (729)
+.++||||||.+++.++. +++ +++++++.++....... + ... ......+.. .. ...
T Consensus 68 ~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (242)
T PRK11126 68 YWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGNPGLQNAEERQARWQNDRQWAQRFRQEPLEQVLADWYQQPVFASLNA 147 (242)
T ss_pred eEEEEECHHHHHHHHHHHhCCcccccEEEEeCCCCCCCCHHHHHHHHhhhHHHHHHhccCcHHHHHHHHHhcchhhccCc
Confidence 999999999999999988 755 49999987754321100 0 000 000000000 00 000
Q ss_pred --hhhh----------------hh------cCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEEC
Q 004816 629 --EKDY----------------YE------KSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYE 684 (729)
Q Consensus 629 --~~~~----------------~~------~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~ 684 (729)
...+ .. .+....+.++++|+|+++|++|..+. .+.+.. ..++++++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~P~lii~G~~D~~~~-----~~~~~~-----~~~~~~i~ 217 (242)
T PRK11126 148 EQRQQLVAKRSNNNGAAVAAMLEATSLAKQPDLRPALQALTFPFYYLCGERDSKFQ-----ALAQQL-----ALPLHVIP 217 (242)
T ss_pred cHHHHHHHhcccCCHHHHHHHHHhcCcccCCcHHHHhhccCCCeEEEEeCCcchHH-----HHHHHh-----cCeEEEeC
Confidence 0000 00 01112456789999999999998541 222221 46899999
Q ss_pred CCCcccCCcccHHHHHHHHHHHHHH
Q 004816 685 GEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 685 ~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
++||.+. .++..++.+.+..|+.+
T Consensus 218 ~~gH~~~-~e~p~~~~~~i~~fl~~ 241 (242)
T PRK11126 218 NAGHNAH-RENPAAFAASLAQILRL 241 (242)
T ss_pred CCCCchh-hhChHHHHHHHHHHHhh
Confidence 9999654 46677888888888865
No 113
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.43 E-value=1.9e-12 Score=118.01 Aligned_cols=215 Identities=20% Similarity=0.256 Sum_probs=141.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
.++.+.++.. .+..+.+.+..- +..-+||++||.-...........+..++..||.++.+|++|.|.+.
T Consensus 9 ~~~~ivi~n~-~ne~lvg~lh~t----------gs~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~gis~fRfDF~GnGeS~ 77 (269)
T KOG4667|consen 9 IAQKIVIPNS-RNEKLVGLLHET----------GSTEIVVLCHGFRSHKNAIIMKNVAKALEKEGISAFRFDFSGNGESE 77 (269)
T ss_pred eeeEEEeccC-CCchhhcceecc----------CCceEEEEeeccccccchHHHHHHHHHHHhcCceEEEEEecCCCCcC
Confidence 4566666666 666666644432 33458999999743333333455778889999999999999988765
Q ss_pred hhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhh--
Q 004816 537 REFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAE-- 613 (729)
Q Consensus 537 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~-- 613 (729)
.++... .+..+++|+..+++++..... ---+|+|||-||-+++.++. +.+ ++-+|-.+|-+|......+
T Consensus 78 gsf~~G----n~~~eadDL~sV~q~~s~~nr---~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I~eRl 149 (269)
T KOG4667|consen 78 GSFYYG----NYNTEADDLHSVIQYFSNSNR---VVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGINERL 149 (269)
T ss_pred CccccC----cccchHHHHHHHHHHhccCce---EEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcchhhhh
Confidence 554322 123457999999999976421 22369999999999999988 554 6777778887777654421
Q ss_pred cchhhhh-----hhhhhc--CC-hhhhhhcCcccc--------cC--CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC
Q 004816 614 THKFESR-----YIDNLV--GS-EKDYYEKSPINF--------VD--KFSCPIILFQGLEDKVVPPDQARKIYKALKENG 675 (729)
Q Consensus 614 ~~~~~~~-----~~~~~~--~~-~~~~~~~sp~~~--------~~--~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g 675 (729)
...+..+ +++... +. ...+...|..+. .. ..+||+|-+||..|.+||.+.+.+|++.+..
T Consensus 150 g~~~l~~ike~Gfid~~~rkG~y~~rvt~eSlmdrLntd~h~aclkId~~C~VLTvhGs~D~IVPve~AkefAk~i~n-- 227 (269)
T KOG4667|consen 150 GEDYLERIKEQGFIDVGPRKGKYGYRVTEESLMDRLNTDIHEACLKIDKQCRVLTVHGSEDEIVPVEDAKEFAKIIPN-- 227 (269)
T ss_pred cccHHHHHHhCCceecCcccCCcCceecHHHHHHHHhchhhhhhcCcCccCceEEEeccCCceeechhHHHHHHhccC--
Confidence 1111111 111110 00 011111111111 11 2359999999999999999999999999875
Q ss_pred CCEEEEEECCCCcccCCcc
Q 004816 676 LPVALVEYEGEQHGFRKAE 694 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~~~ 694 (729)
.+++++||++|.+...+
T Consensus 228 --H~L~iIEgADHnyt~~q 244 (269)
T KOG4667|consen 228 --HKLEIIEGADHNYTGHQ 244 (269)
T ss_pred --CceEEecCCCcCccchh
Confidence 58999999999987644
No 114
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=99.43 E-value=5e-11 Score=129.86 Aligned_cols=313 Identities=13% Similarity=0.134 Sum_probs=184.7
Q ss_pred ceEEcCCCcEEEEeecCCCCCceEEEEcCCCC-CCCC-cccCCCCCccccccc---ccCCceEEEECCEEEEEECCCC--
Q 004816 93 GTAVDGHGRLIWLESRPTEAGRGVLVKEPAKA-GDEP-SDITPKEYAVRTTAQ---EYGGGAFRIFGDTVIFSNYKDQ-- 165 (729)
Q Consensus 93 ~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~-~g~~-~~l~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~-- 165 (729)
.|... |++.||....++ .....++|..... .|.. +.|++.. ....-. ..+...++++++.++|..+..|
T Consensus 73 ~p~~~-g~~~y~~~~~~~-~~~~~~~r~~~~~~~~~~~evllD~n--~l~~~~~~~~~~~~~~Spdg~~la~~~s~~G~e 148 (414)
T PF02897_consen 73 VPVRR-GGYYYYSRNQGG-KNYPVLYRRKTDEEDGPEEEVLLDPN--ELAKDGGYVSLGGFSVSPDGKRLAYSLSDGGSE 148 (414)
T ss_dssp --EEE-TTEEEEEEE-SS--SS-EEEEEETTS-TS-C-EEEEEGG--GGSTTSS-EEEEEEEETTTSSEEEEEEEETTSS
T ss_pred ccEEE-CCeEEEEEEcCC-CceEEEEEEecccCCCCceEEEEcch--HhhccCceEEeeeeeECCCCCEEEEEecCCCCc
Confidence 34434 889998876553 4444667765441 1233 4454321 111111 1112233345668888866554
Q ss_pred --cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC--CCCcceEEEEEEcCCCceE--EeeeC
Q 004816 166 --RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD--ALNSTTEIVAIALNGQNIQ--VLVSG 239 (729)
Q Consensus 166 --~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~--~~~~~~~l~~~dl~~g~~~--~lt~~ 239 (729)
.|+++|+++ |+ .+...- .......+.|++||+.++|+..+.... ......+||+..+.++... .|..+
T Consensus 149 ~~~l~v~Dl~t--g~--~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~ 222 (414)
T PF02897_consen 149 WYTLRVFDLET--GK--FLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE 222 (414)
T ss_dssp EEEEEEEETTT--TE--EEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-
T ss_pred eEEEEEEECCC--Cc--CcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEee
Confidence 799999998 53 222210 012223389999999999998766433 1122478999999886543 55443
Q ss_pred C--Ce-eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCC---CeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 240 S--DF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENG---DVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 240 ~--~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g---~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
. .+ ..+...|+||++|+....... ..+++|++++. ++ ......+....+ .....+... ++.+++
T Consensus 223 ~~~~~~~~~~~~s~d~~~l~i~~~~~~----~~s~v~~~d~~-~~~~~~~~~~~l~~~~~----~~~~~v~~~-~~~~yi 292 (414)
T PF02897_consen 223 PDEPFWFVSVSRSKDGRYLFISSSSGT----SESEVYLLDLD-DGGSPDAKPKLLSPRED----GVEYYVDHH-GDRLYI 292 (414)
T ss_dssp TTCTTSEEEEEE-TTSSEEEEEEESSS----SEEEEEEEECC-CTTTSS-SEEEEEESSS----S-EEEEEEE-TTEEEE
T ss_pred cCCCcEEEEEEecCcccEEEEEEEccc----cCCeEEEEecc-ccCCCcCCcEEEeCCCC----ceEEEEEcc-CCEEEE
Confidence 2 33 457789999999876664331 23789999998 43 222344444433 111222222 334888
Q ss_pred EEecCCCceEEEEEEcCCCe---EE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC-CC
Q 004816 314 VTDRKNGFWNLHKWIESNNE---VL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF-GH 388 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~---~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~-~g 388 (729)
.++.......|+.++++... .. .|.+......- ..+.. .+++|++...+++..+|.++++. +.
T Consensus 293 ~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l-------~~~~~-----~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 293 LTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL-------EDVSL-----FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE-------EEEEE-----ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred eeCCCCCCcEEEEecccccccccceeEEcCCCCceeE-------EEEEE-----ECCEEEEEEEECCccEEEEEECCCCc
Confidence 88875567899999987754 33 44433211111 11222 46789999999999999999999 77
Q ss_pred ceEeeccCCc-ceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 389 SLSLLDIPFT-DIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 389 ~~~~lt~~~~-~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
....+..+.. .+..+ ..+++.+++..++..+|..+|.+|+++++.+.++
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k 412 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK 412 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence 7667765543 34444 4567889999999999999999999999987665
No 115
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.43 E-value=4.9e-12 Score=133.89 Aligned_cols=185 Identities=11% Similarity=0.079 Sum_probs=110.4
Q ss_pred chhhhH---HHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc-EEEEEcChHHHHH
Q 004816 510 LNLSIQ---YWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR-LCITGGSAGGYTT 585 (729)
Q Consensus 510 ~~~~~~---~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~~a 585 (729)
|...+. .|...+|.|+++|+||.++... ..+ ..+|....+..+++.. +.++ +.++||||||+++
T Consensus 85 w~~~v~~~~~L~~~~~~Vi~~Dl~G~g~s~~-------~~~---~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA 152 (343)
T PRK08775 85 WEGLVGSGRALDPARFRLLAFDFIGADGSLD-------VPI---DTADQADAIALLLDAL--GIARLHAFVGYSYGALVG 152 (343)
T ss_pred chhccCCCCccCccccEEEEEeCCCCCCCCC-------CCC---CHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHH
Confidence 444443 4545689999999997543211 111 1233333333333332 2335 5799999999999
Q ss_pred HHHHh-CCCcceEEEEeccccChhH----Hhh---h----c-------c--h---------hh--hhhhhhhcCC-----
Q 004816 586 LAALA-FRDTFKAGASLYGVADLSM----LRA---E----T-------H--K---------FE--SRYIDNLVGS----- 628 (729)
Q Consensus 586 ~~~~~-~~~~~~a~v~~~~~~d~~~----~~~---~----~-------~--~---------~~--~~~~~~~~~~----- 628 (729)
+.++. +|++++++|++++...... ... . . . . +. ..+.......
T Consensus 153 ~~~A~~~P~~V~~LvLi~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (343)
T PRK08775 153 LQFASRHPARVRTLVVVSGAHRAHPYAAAWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEERFDAPPEVIN 232 (343)
T ss_pred HHHHHHChHhhheEEEECccccCCHHHHHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHHHhCCCccccC
Confidence 99998 9999999999987532110 000 0 0 0 0 00 0000000000
Q ss_pred ------hh---------hhhhcCc-------------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE
Q 004816 629 ------EK---------DYYEKSP-------------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL 680 (729)
Q Consensus 629 ------~~---------~~~~~sp-------------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~ 680 (729)
.. .....++ ...+.+|++|+|+++|++|.++|++.+.++.+.+.. ..++
T Consensus 233 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~I~~PtLvi~G~~D~~~p~~~~~~~~~~i~p---~a~l 309 (343)
T PRK08775 233 GRVRVAAEDYLDAAGAQYVARTPVNAYLRLSESIDLHRVDPEAIRVPTVVVAVEGDRLVPLADLVELAEGLGP---RGSL 309 (343)
T ss_pred CCccchHHHHHHHHHHHHHHhcChhHHHHHHHHHhhcCCChhcCCCCeEEEEeCCCEeeCHHHHHHHHHHcCC---CCeE
Confidence 00 0000000 012567899999999999999999988888777642 4589
Q ss_pred EEECC-CCcccCCcccHHHHHHHHHHHHHHH
Q 004816 681 VEYEG-EQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 681 ~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++++ +||... -+....+.+.+.+||.+.
T Consensus 310 ~~i~~~aGH~~~-lE~Pe~~~~~l~~FL~~~ 339 (343)
T PRK08775 310 RVLRSPYGHDAF-LKETDRIDAILTTALRST 339 (343)
T ss_pred EEEeCCccHHHH-hcCHHHHHHHHHHHHHhc
Confidence 99985 899753 356778888888998764
No 116
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.42 E-value=2.1e-11 Score=122.77 Aligned_cols=249 Identities=13% Similarity=0.147 Sum_probs=166.9
Q ss_pred CHHHHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEE
Q 004816 80 TADVVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIF 159 (729)
Q Consensus 80 t~e~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 159 (729)
|.|.+......+++|... +.++||+.. .+|--.||..+.+|. ..+.-|. ++.|--....-++.+|+|
T Consensus 217 tFeK~vdl~~~vS~PmIV-~~RvYFlsD---~eG~GnlYSvdldGk-DlrrHTn--------FtdYY~R~~nsDGkrIvF 283 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIV-GERVYFLSD---HEGVGNLYSVDLDGK-DLRRHTN--------FTDYYPRNANSDGKRIVF 283 (668)
T ss_pred ceeeeeecCCCcCCceEE-cceEEEEec---ccCccceEEeccCCc-hhhhcCC--------chhccccccCCCCcEEEE
Confidence 566666666778888888 999999976 345556888887721 2333332 334433444556779999
Q ss_pred EECCCCcEEEEeCCCCCCCCeecCCC-CC--CCc-eeeecc-----eecC-CCCEEEEEEeccC------CC--------
Q 004816 160 SNYKDQRLYKHSIDSKDSSPLPITPD-YG--EPL-VSYADG-----IFDP-RFNRYVTVREDRR------QD-------- 215 (729)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~~~lt~~-~~--~~~-~~~~~~-----~~SP-dG~~l~~~~~~~~------~~-------- 215 (729)
.. .|+||++|+++ ...+.|.-+ +- .+. ..+.+| .|++ +|..+++++.... +.
T Consensus 284 q~--~GdIylydP~t--d~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~ 359 (668)
T COG4946 284 QN--AGDIYLYDPET--DSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGKAFIMRPWDGYSIQVGKK 359 (668)
T ss_pred ec--CCcEEEeCCCc--CcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCcEEEECCCCCeeEEcCCC
Confidence 95 56699999987 666655432 10 000 011111 1344 7888888754221 00
Q ss_pred -----------C------CCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec
Q 004816 216 -----------A------LNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 278 (729)
Q Consensus 216 -----------~------~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~ 278 (729)
+ ......|-+++.++++.+++..+-+.......|||||+++... +..+||++|++
T Consensus 360 ~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaN--------dr~el~vidid 431 (668)
T COG4946 360 GGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAN--------DRFELWVIDID 431 (668)
T ss_pred CceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEc--------CceEEEEEEec
Confidence 0 0112357788999999899988888888899999999987654 45679999999
Q ss_pred CCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCC--ceEEEEEEcCCCeEEEeeccCccccCCcccccCcc
Q 004816 279 ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG--FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINS 355 (729)
Q Consensus 279 ~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g--~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~ 355 (729)
+|+.+. +-.... .-+..+.|+|+++ ++|.-.. | .++|.++|.++++.-.+|++.+...+|.+.+
T Consensus 432 -ngnv~~--idkS~~----~lItdf~~~~nsr~iAYafP~--gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~---- 498 (668)
T COG4946 432 -NGNVRL--IDKSEY----GLITDFDWHPNSRWIAYAFPE--GYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDP---- 498 (668)
T ss_pred -CCCeeE--eccccc----ceeEEEEEcCCceeEEEecCc--ceeeeeEEEEecCCCeEEEecCCcccccCcccCC----
Confidence 887532 222222 4557889999999 7776654 4 4678899999999999997776666777766
Q ss_pred eeeeeecCCCCEEEEEEEE
Q 004816 356 YEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 356 ~~~l~~~~~~~~l~~~s~~ 374 (729)
+++.|||.+.+
T Consensus 499 --------d~ryLYfLs~R 509 (668)
T COG4946 499 --------DGRYLYFLSAR 509 (668)
T ss_pred --------CCcEEEEEecc
Confidence 77888887764
No 117
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.42 E-value=1.1e-12 Score=127.57 Aligned_cols=159 Identities=20% Similarity=0.262 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhH----Hhhh---cchhhhhhhh-
Q 004816 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSM----LRAE---THKFESRYID- 623 (729)
Q Consensus 553 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~----~~~~---~~~~~~~~~~- 623 (729)
+=+..+++||.+++.+++++|+|+|.|.||-+|+.++. +| .++++|+.+|..-... +... ..........
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~~~~~~~~~~~~~~lp~~~~~~~~~ 82 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVVFQGIGFYRDSSKPLPYLPFDISKF 82 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB--SSEEEETTE--EE----B-GGG-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeEecchhcccCCCccCCcCCcChhhc
Confidence 44789999999999999999999999999999999999 66 8999999988532211 0000 0000000000
Q ss_pred --hhcCCh---hhh------hhcCcccccCCCCCCEEEEEeCCCCCCChH-HHHHHHHHHHhCCCC--EEEEEECCCCcc
Q 004816 624 --NLVGSE---KDY------YEKSPINFVDKFSCPIILFQGLEDKVVPPD-QARKIYKALKENGLP--VALVEYEGEQHG 689 (729)
Q Consensus 624 --~~~~~~---~~~------~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l~~~g~~--~~~~~~~~~gH~ 689 (729)
...+.. ..+ ......-.+.++++|+|+++|++|...|-. .++.+.+.|+++|.+ ++++.||++||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~a~IpvE~i~~piLli~g~dD~~WpS~~~a~~i~~rL~~~~~~~~~~~l~Y~~aGH~ 162 (213)
T PF08840_consen 83 SWNEPGLLRSRYAFELADDKAVEEARIPVEKIKGPILLISGEDDQIWPSSEMAEQIEERLKAAGFPHNVEHLSYPGAGHL 162 (213)
T ss_dssp EE-TTS-EE-TT-B--TTTGGGCCCB--GGG--SEEEEEEETT-SSS-HHHHHHHHHHHHHCTT-----EEEEETTB-S-
T ss_pred eecCCcceehhhhhhcccccccccccccHHHcCCCEEEEEeCCCCccchHHHHHHHHHHHHHhCCCCcceEEEcCCCCce
Confidence 000000 000 001112236788999999999999998874 556778889998865 789999999997
Q ss_pred cCCc---------------------------ccHHHHHHHHHHHHHHHhC
Q 004816 690 FRKA---------------------------ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 690 ~~~~---------------------------~~~~~~~~~~~~fl~~~l~ 712 (729)
+..+ ....+.+.++++||+++|+
T Consensus 163 i~~Py~P~~~~~~~~~~~~~~~~GG~~~~~a~A~~dsW~~~l~Fl~~~L~ 212 (213)
T PF08840_consen 163 IEPPYFPHCRASYHKFIGTPLAWGGEPEAHAKAQEDSWKKILEFLRKHLG 212 (213)
T ss_dssp --STT-----EEEETTTTEEEE--B-HHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ecCCCCCCcccccccccCCcccCCCChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5311 1356889999999999986
No 118
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.41 E-value=2e-11 Score=129.25 Aligned_cols=216 Identities=11% Similarity=0.030 Sum_probs=130.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++....+ ...|.||++||.+.. ...|...+..|++ +|.|+++|++|.|........ ..
T Consensus 113 ~~~~~~y~~~G~----------~~~~~ivllHG~~~~--~~~w~~~~~~L~~-~~~Via~DlpG~G~S~~p~~~----~~ 175 (383)
T PLN03084 113 DLFRWFCVESGS----------NNNPPVLLIHGFPSQ--AYSYRKVLPVLSK-NYHAIAFDWLGFGFSDKPQPG----YG 175 (383)
T ss_pred CceEEEEEecCC----------CCCCeEEEECCCCCC--HHHHHHHHHHHhc-CCEEEEECCCCCCCCCCCccc----cc
Confidence 677776433221 124789999998543 3456667777764 899999999976543322100 00
Q ss_pred CcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccCh-----hHHhhhc-------
Q 004816 548 GIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADL-----SMLRAET------- 614 (729)
Q Consensus 548 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~-----~~~~~~~------- 614 (729)
.....+++...+..++++. ..+++.|+|||+||.+++.++. +|++++++|+.++.... .......
T Consensus 176 ~~ys~~~~a~~l~~~i~~l--~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~~~~~~~~p~~l~~~~~~l~~~ 253 (383)
T PLN03084 176 FNYTLDEYVSSLESLIDEL--KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPLTKEHAKLPSTLSEFSNFLLGE 253 (383)
T ss_pred ccCCHHHHHHHHHHHHHHh--CCCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCCccccccchHHHHHHHHHHhhh
Confidence 1123455554444444442 3368999999999999999988 99999999999976421 0000000
Q ss_pred ----chhh--h-----------------hhhhhhc--CC-hhh----hhhc-Cc-------cc---ccCCCCCCEEEEEe
Q 004816 615 ----HKFE--S-----------------RYIDNLV--GS-EKD----YYEK-SP-------IN---FVDKFSCPIILFQG 653 (729)
Q Consensus 615 ----~~~~--~-----------------~~~~~~~--~~-~~~----~~~~-sp-------~~---~~~~i~~PvL~i~G 653 (729)
.... . .|..... +. ... +... .. +. ...++++|+|+++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPvLiI~G 333 (383)
T PLN03084 254 IFSQDPLRASDKALTSCGPYAMKEDDAMVYRRPYLTSGSSGFALNAISRSMKKELKKYIEEMRSILTDKNWKTPITVCWG 333 (383)
T ss_pred hhhcchHHHHhhhhcccCccCCCHHHHHHHhccccCCcchHHHHHHHHHHhhcccchhhHHHHhhhccccCCCCEEEEee
Confidence 0000 0 0000000 00 000 0000 00 00 01357899999999
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 654 LEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 654 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
++|..++++.++++.+.. +.+++++|++||.... +..++..+.+.+|+.
T Consensus 334 ~~D~~v~~~~~~~~a~~~-----~a~l~vIp~aGH~~~~-E~Pe~v~~~I~~Fl~ 382 (383)
T PLN03084 334 LRDRWLNYDGVEDFCKSS-----QHKLIELPMAGHHVQE-DCGEELGGIISGILS 382 (383)
T ss_pred CCCCCcCHHHHHHHHHhc-----CCeEEEECCCCCCcch-hCHHHHHHHHHHHhh
Confidence 999999998777766642 4589999999996544 677788888888875
No 119
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=99.40 E-value=1.5e-10 Score=118.00 Aligned_cols=275 Identities=12% Similarity=0.141 Sum_probs=149.8
Q ss_pred CCCcccCCCCC-cccccccccCCceEEEECCEEEEEECCCC--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCC
Q 004816 126 DEPSDITPKEY-AVRTTAQEYGGGAFRIFGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF 202 (729)
Q Consensus 126 g~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG 202 (729)
.+..+||+.+. +.+.. +-..+|..++++++|.++.++ +||++|+++ ++.+|||.++ +.......+||++
T Consensus 21 ~~VtrLT~~~~~~h~~Y---F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t--~~i~QLTdg~---g~~~~g~~~s~~~ 92 (386)
T PF14583_consen 21 HRVTRLTPPDGHSHRLY---FYQNCFTDDGRKLLFASDFDGNRNLYLLDLAT--GEITQLTDGP---GDNTFGGFLSPDD 92 (386)
T ss_dssp -EEEE-S-TTS-EE------TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT---EEEE---SS----B-TTT-EE-TTS
T ss_pred ceEEEecCCCCccccee---ecCCCcCCCCCEEEEEeccCCCcceEEEEccc--CEEEECccCC---CCCccceEEecCC
Confidence 35567777653 22222 234557777889999888765 999999999 9999999874 2222357899999
Q ss_pred CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC-eeeeeee--CCCCCeEEEEEecCCCC----CC--------
Q 004816 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD-FYAFPRM--DPRGERMAWIEWHHPNM----PW-------- 267 (729)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~-~~~~~~~--SPDG~~la~~~~~~~~~----~~-------- 267 (729)
+.++|+... .+|+.+|+++++.+.|..-+. +...-.| +.|+++++.+...+... .|
T Consensus 93 ~~~~Yv~~~---------~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~ 163 (386)
T PF14583_consen 93 RALYYVKNG---------RSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYE 163 (386)
T ss_dssp SEEEEEETT---------TEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHH
T ss_pred CeEEEEECC---------CeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHh
Confidence 999998753 369999999999988876443 3333445 56899998877543321 11
Q ss_pred --CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC-c-EEEEEecC-CC-ceEEEEEEcCCCeEEEeeccC
Q 004816 268 --DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG-E-LFFVTDRK-NG-FWNLHKWIESNNEVLAIYSLD 341 (729)
Q Consensus 268 --~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG-~-l~~~~~~~-~g-~~~l~~~d~~~g~~~~l~~~~ 341 (729)
....|+.+|+. +|+. ..++... ..+..+.+||.. . |.|..... .. ..+||.++.+++..+.+....
T Consensus 164 a~p~~~i~~idl~-tG~~--~~v~~~~-----~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~ 235 (386)
T PF14583_consen 164 ARPHCRIFTIDLK-TGER--KVVFEDT-----DWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM 235 (386)
T ss_dssp C---EEEEEEETT-T--E--EEEEEES-----S-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---
T ss_pred hCCCceEEEEECC-CCce--eEEEecC-----ccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC
Confidence 23579999999 7875 3444443 455678888854 4 55654431 11 258999999988888876322
Q ss_pred --ccccCCcccccCcceeeeeecCCCCEEEEEEEEC-C-eEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCC
Q 004816 342 --AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN-G-RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASG 417 (729)
Q Consensus 342 --~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~-g-~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~ 417 (729)
...+..-|.+ ||..|++.+... + ...|+.+++++++.+.+....+.+.-.+..++.+++--++.
T Consensus 236 ~~e~~gHEfw~~------------DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 236 EGESVGHEFWVP------------DGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TTEEEEEEEE-T------------TSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE--
T ss_pred CCcccccccccC------------CCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCC
Confidence 2333345665 788887766543 3 35799999999988776544333322244444444433221
Q ss_pred -------------CCCceEEEEEcCCCcceeee
Q 004816 418 -------------VEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 418 -------------~~~~~ly~~d~~~~~~~~lt 437 (729)
...+-||++++..++...|.
T Consensus 304 ~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~ 336 (386)
T PF14583_consen 304 APVDVADAGGYKIENDPWIYLFDVEAGRFRKLA 336 (386)
T ss_dssp -----------------EEEEEETTTTEEEEEE
T ss_pred CCccccccccceecCCcEEEEeccccCceeeee
Confidence 11225788888887766554
No 120
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.40 E-value=1.7e-11 Score=126.86 Aligned_cols=207 Identities=20% Similarity=0.249 Sum_probs=130.9
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
...|.||++||... ....|+..+..+... |+.|+++|..| .|+. +..+.. ...++.+....+..+..+..
T Consensus 56 ~~~~pvlllHGF~~--~~~~w~~~~~~L~~~~~~~v~aiDl~G-~g~~-s~~~~~----~~y~~~~~v~~i~~~~~~~~- 126 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGA--SSFSWRRVVPLLSKAKGLRVLAIDLPG-HGYS-SPLPRG----PLYTLRELVELIRRFVKEVF- 126 (326)
T ss_pred CCCCcEEEeccccC--CcccHhhhccccccccceEEEEEecCC-CCcC-CCCCCC----CceehhHHHHHHHHHHHhhc-
Confidence 34677999999743 456666655555554 79999999987 3321 111111 11456667766665555533
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEE---EeccccChhH-----Hhhhcch-------------------hhhh
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGA---SLYGVADLSM-----LRAETHK-------------------FESR 620 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v---~~~~~~d~~~-----~~~~~~~-------------------~~~~ 620 (729)
.+++.++|||+||++|+.+|+ +|+.++.++ ...+...... ....... +...
T Consensus 127 -~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 205 (326)
T KOG1454|consen 127 -VEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEG 205 (326)
T ss_pred -CcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHh
Confidence 245999999999999999998 999999999 4444322110 0000000 0000
Q ss_pred hhhhhcC---C---------------------hhh----h---h--hcCcccccCCCC-CCEEEEEeCCCCCCChHHHHH
Q 004816 621 YIDNLVG---S---------------------EKD----Y---Y--EKSPINFVDKFS-CPIILFQGLEDKVVPPDQARK 666 (729)
Q Consensus 621 ~~~~~~~---~---------------------~~~----~---~--~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~ 666 (729)
....... + .+. + . ...+...+.++. +|+|+++|++|..+|.+.++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~pvlii~G~~D~~~p~~~~~~ 285 (326)
T KOG1454|consen 206 LLRCLKVVYTDPSRLLEKLLHLLSRPVKEHFHRDARLSLFLELLGFDENLLSLIKKIWKCPVLIIWGDKDQIVPLELAEE 285 (326)
T ss_pred hhcceeeeccccccchhhhhhheecccccchhhhheeeEEEeccCccchHHHhhccccCCceEEEEcCcCCccCHHHHHH
Confidence 0000000 0 000 0 0 012233456676 999999999999999997777
Q ss_pred HHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 667 IYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 667 ~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
+.+.+ ..+++++++++||.... +..+.....+..|+.++.
T Consensus 286 ~~~~~----pn~~~~~I~~~gH~~h~-e~Pe~~~~~i~~Fi~~~~ 325 (326)
T KOG1454|consen 286 LKKKL----PNAELVEIPGAGHLPHL-ERPEEVAALLRSFIARLR 325 (326)
T ss_pred HHhhC----CCceEEEeCCCCccccc-CCHHHHHHHHHHHHHHhc
Confidence 77666 36799999999997544 778888899999998753
No 121
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=99.37 E-value=3.7e-12 Score=115.11 Aligned_cols=203 Identities=17% Similarity=0.151 Sum_probs=143.7
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-hhhhHHHhhCCcEEEEecCCC
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-NLSIQYWTSRGWAFVDVNYGG 531 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~~~~~~la~~G~~v~~~d~rG 531 (729)
+...+.+.+.+-- .| .-...+|.|.+ ..|++|++|||.|....... -..+.-...+||+|+.++|.-
T Consensus 40 ~~i~r~e~l~Yg~--~g-~q~VDIwg~~~---------~~klfIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l 107 (270)
T KOG4627|consen 40 KQIIRVEHLRYGE--GG-RQLVDIWGSTN---------QAKLFIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNL 107 (270)
T ss_pred ccccchhccccCC--CC-ceEEEEecCCC---------CccEEEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCc
Confidence 3445556655543 33 44446777744 34899999999987555432 235566778999999999954
Q ss_pred CCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhH
Q 004816 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSM 609 (729)
Q Consensus 532 s~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~ 609 (729)
++. ++ .-...+.|+...++|+++... +.+++.+.|||.|+++++++.. +.+++.++++.+|++++..
T Consensus 108 ~~q-~h---------tL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~E 176 (270)
T KOG4627|consen 108 CPQ-VH---------TLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLRE 176 (270)
T ss_pred Ccc-cc---------cHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHHH
Confidence 331 11 112347889999999988743 4567999999999999999987 8889999999999999987
Q ss_pred HhhhcchhhhhhhhhhcC-ChhhhhhcCcc-cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCC
Q 004816 610 LRAETHKFESRYIDNLVG-SEKDYYEKSPI-NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~-~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~g 687 (729)
+...... .-++ ..+.-...|+. .....++.|+|++.++.|.---++|.+.+...+++ ..+..|++-+
T Consensus 177 L~~te~g-------~dlgLt~~~ae~~Scdl~~~~~v~~~ilVv~~~~espklieQnrdf~~q~~~----a~~~~f~n~~ 245 (270)
T KOG4627|consen 177 LSNTESG-------NDLGLTERNAESVSCDLWEYTDVTVWILVVAAEHESPKLIEQNRDFADQLRK----ASFTLFKNYD 245 (270)
T ss_pred HhCCccc-------cccCcccchhhhcCccHHHhcCceeeeeEeeecccCcHHHHhhhhHHHHhhh----cceeecCCcc
Confidence 6443211 1111 12223333442 23566789999999999987778999999999986 4788999999
Q ss_pred cc
Q 004816 688 HG 689 (729)
Q Consensus 688 H~ 689 (729)
|.
T Consensus 246 hy 247 (270)
T KOG4627|consen 246 HY 247 (270)
T ss_pred hh
Confidence 95
No 122
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.37 E-value=8.8e-12 Score=123.39 Aligned_cols=207 Identities=12% Similarity=0.132 Sum_probs=120.8
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
...+.+|++||.+.+ ...|......|+. ...|.++|..|.|.+.+. ...-+.... ...+.+.++.-...-.
T Consensus 88 ~~~~plVliHGyGAg--~g~f~~Nf~~La~-~~~vyaiDllG~G~SSRP---~F~~d~~~~-e~~fvesiE~WR~~~~-- 158 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAG--LGLFFRNFDDLAK-IRNVYAIDLLGFGRSSRP---KFSIDPTTA-EKEFVESIEQWRKKMG-- 158 (365)
T ss_pred cCCCcEEEEeccchh--HHHHHHhhhhhhh-cCceEEecccCCCCCCCC---CCCCCcccc-hHHHHHHHHHHHHHcC--
Confidence 334558889997433 2334444555666 899999999865554433 322222211 2344555553333322
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH------hhhc--------------c---------hh--
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML------RAET--------------H---------KF-- 617 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~------~~~~--------------~---------~~-- 617 (729)
-+++.|+|||+|||++..+|. +|++++.+++.+|..-.... .... . .+
T Consensus 159 L~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~~~~nPl~~LR~~Gp~Gp 238 (365)
T KOG4409|consen 159 LEKMILVGHSFGGYLAAKYALKYPERVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVATNFNPLALLRLMGPLGP 238 (365)
T ss_pred CcceeEeeccchHHHHHHHHHhChHhhceEEEecccccccCCCcchhhcCCChHHHhhhhhhhhcCCHHHHHHhccccch
Confidence 369999999999999999988 99999999999885321100 0000 0 00
Q ss_pred ------------------hhhhhhhhc----C-Ch---hhh--------hhcCc-ccccCCCC--CCEEEEEeCCCCCCC
Q 004816 618 ------------------ESRYIDNLV----G-SE---KDY--------YEKSP-INFVDKFS--CPIILFQGLEDKVVP 660 (729)
Q Consensus 618 ------------------~~~~~~~~~----~-~~---~~~--------~~~sp-~~~~~~i~--~PvL~i~G~~D~~vp 660 (729)
.+.++...+ . ++ ..+ .++.| +..+..++ +|+++|+|++|.+ +
T Consensus 239 ~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~psgE~~fk~l~~~~g~Ar~Pm~~r~~~l~~~~pv~fiyG~~dWm-D 317 (365)
T KOG4409|consen 239 KLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNPSGETAFKNLFEPGGWARRPMIQRLRELKKDVPVTFIYGDRDWM-D 317 (365)
T ss_pred HHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCCcHHHHHHHHHhccchhhhhHHHHHHhhccCCCEEEEecCcccc-c
Confidence 000000000 0 00 000 01112 22244445 9999999999975 5
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 661 PDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 661 ~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
...+.++...+. ...++.+++|++||... -++.+.+.+.++.++++
T Consensus 318 ~~~g~~~~~~~~--~~~~~~~~v~~aGHhvy-lDnp~~Fn~~v~~~~~~ 363 (365)
T KOG4409|consen 318 KNAGLEVTKSLM--KEYVEIIIVPGAGHHVY-LDNPEFFNQIVLEECDK 363 (365)
T ss_pred chhHHHHHHHhh--cccceEEEecCCCceee-cCCHHHHHHHHHHHHhc
Confidence 556666666653 34689999999999753 24556777777777654
No 123
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.34 E-value=7e-11 Score=125.40 Aligned_cols=230 Identities=13% Similarity=0.082 Sum_probs=140.2
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc----------c-chhh---hHHHhhCCcEEEEecCCCCCC-
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG----------I-LNLS---IQYWTSRGWAFVDVNYGGSTG- 534 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~----------~-~~~~---~~~la~~G~~v~~~d~rGs~g- 534 (729)
.+|.+..|-..+ ..+-++||++|+..+..... . |..+ -..+--.-|-|+++|.-|++.
T Consensus 41 ~~~~Y~t~G~ln-------~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~~yfvi~~n~lG~~~~ 113 (389)
T PRK06765 41 VQMGYETYGTLN-------RAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTNKYFVISTDTLCNVQV 113 (389)
T ss_pred ceEEEEeccccC-------CCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCCceEEEEecccCCCcC
Confidence 455555555444 23458999999964422110 1 2211 122334459999999998642
Q ss_pred -------CchhHHHhh-----ccCCCcccHHHHHHHHHHHHhCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 535 -------YGREFRERL-----LGRWGIVDVNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 535 -------~g~~~~~~~-----~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
.|..-.... ..+.....+.|+.+.+..+++... .+++. ++||||||++++.++. +|++++.+|+
T Consensus 114 ~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lg--i~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~ 191 (389)
T PRK06765 114 KDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLG--IARLHAVMGPSMGGMQAQEWAVHYPHMVERMIG 191 (389)
T ss_pred CCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcC--CCCceEEEEECHHHHHHHHHHHHChHhhheEEE
Confidence 121111111 112344568888888887777643 46775 9999999999999988 9999999999
Q ss_pred eccccCh--h---HHhh---h---cc-------------h------h---------hhhhhhhhcCC-------------
Q 004816 601 LYGVADL--S---MLRA---E---TH-------------K------F---------ESRYIDNLVGS------------- 628 (729)
Q Consensus 601 ~~~~~d~--~---~~~~---~---~~-------------~------~---------~~~~~~~~~~~------------- 628 (729)
+++.... . .+.. . .. . . ...++...++.
T Consensus 192 ia~~~~~~~~~~~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~~~~~~f~r~~~~~~~~~~~~~ 271 (389)
T PRK06765 192 VIGNPQNDAWTSVNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEHFYETTFPRNASIEVDPYEKVS 271 (389)
T ss_pred EecCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHHHHHHHcCcCcccccccccccc
Confidence 8653211 0 0000 0 00 0 0 00000000000
Q ss_pred ----hhhhh------------------------hc-------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHh
Q 004816 629 ----EKDYY------------------------EK-------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKE 673 (729)
Q Consensus 629 ----~~~~~------------------------~~-------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~ 673 (729)
.+.|. .. +....+.++++|+|+++|++|.++|+++++++.+.+..
T Consensus 272 ~~~~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~~PtLvI~G~~D~l~p~~~~~~la~~lp~ 351 (389)
T PRK06765 272 TLTSFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIEANVLMIPCKQDLLQPPRYNYKMVDILQK 351 (389)
T ss_pred chhhHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 00110 00 12234567899999999999999999999999999987
Q ss_pred CCCCEEEEEECC-CCcccCCcccHHHHHHHHHHHHHH
Q 004816 674 NGLPVALVEYEG-EQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 674 ~g~~~~~~~~~~-~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.+.+++++++++ .||.. ..+...++.+.+.+||.+
T Consensus 352 ~~~~a~l~~I~s~~GH~~-~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 352 QGKYAEVYEIESINGHMA-GVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred cCCCeEEEEECCCCCcch-hhcCHHHHHHHHHHHHcc
Confidence 666789999985 89964 335566777888888865
No 124
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=99.33 E-value=4.5e-11 Score=116.27 Aligned_cols=175 Identities=19% Similarity=0.149 Sum_probs=119.4
Q ss_pred EEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHH
Q 004816 475 YYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVND 554 (729)
Q Consensus 475 ~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D 554 (729)
.++.|.. .+.+|+||++||.. .....|..+.+.+++.||+|+.+|+....+. -...+.++
T Consensus 7 ~v~~P~~-------~g~yPVv~f~~G~~--~~~s~Ys~ll~hvAShGyIVV~~d~~~~~~~-----------~~~~~~~~ 66 (259)
T PF12740_consen 7 LVYYPSS-------AGTYPVVLFLHGFL--LINSWYSQLLEHVASHGYIVVAPDLYSIGGP-----------DDTDEVAS 66 (259)
T ss_pred EEEecCC-------CCCcCEEEEeCCcC--CCHHHHHHHHHHHHhCceEEEEecccccCCC-----------CcchhHHH
Confidence 5567765 56799999999974 3334488899999999999999996532221 12234788
Q ss_pred HHHHHHHHHhCC--------CCCCCcEEEEEcChHHHHHHHHHh-C-----CCcceEEEEeccccChhHHhhhcchhhhh
Q 004816 555 CCSCATFLVGSG--------KADEKRLCITGGSAGGYTTLAALA-F-----RDTFKAGASLYGVADLSMLRAETHKFESR 620 (729)
Q Consensus 555 ~~~~~~~l~~~~--------~~d~~ri~i~G~S~GG~~a~~~~~-~-----~~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 620 (729)
+...++|+.+.. .+|-.|++|+|||.||.+|..++. + +.+|++++++.|+-.+......
T Consensus 67 ~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVdG~~~~~~~------- 139 (259)
T PF12740_consen 67 AAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVDGMSKGSQT------- 139 (259)
T ss_pred HHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEeccccccccccCC-------
Confidence 888999987731 258889999999999999988876 4 5689999999998633221110
Q ss_pred hhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCC--------CCCh--HHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 621 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDK--------VVPP--DQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 621 ~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~--------~vp~--~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
.+..+.. .| ..-+...|+|++-..-.. -|-+ .+-.+|+++++. +...++.++.||.
T Consensus 140 -------~P~v~~~-~p--~s~~~~~P~lviGtGLg~~~~~~~~~~CaP~g~n~~~Ff~~~~~---p~~~~v~~~~GH~ 205 (259)
T PF12740_consen 140 -------EPPVLTY-TP--QSFDFSMPALVIGTGLGGEPRNPLFPPCAPAGVNYREFFDECKP---PSWHFVAKDYGHM 205 (259)
T ss_pred -------CCccccC-cc--cccCCCCCeEEEecccCcccccccCCCCCCCCCCHHHHHHhcCC---CEEEEEeCCCCch
Confidence 0111110 11 111245899999666553 2323 245678777754 7788888999996
No 125
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=99.31 E-value=4.4e-11 Score=122.02 Aligned_cols=196 Identities=22% Similarity=0.276 Sum_probs=126.3
Q ss_pred hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 512 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 512 ~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..++.|.++||+|+++||-|-+. .|... .-....+-|.+++++.+... +.-...+++++|+|.||+.+++++.
T Consensus 17 ~~l~~~L~~GyaVv~pDY~Glg~---~y~~~---~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 17 PFLAAWLARGYAVVAPDYEGLGT---PYLNG---RSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred HHHHHHHHCCCEEEecCCCCCCC---cccCc---HhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHH
Confidence 46778889999999999987554 33211 11112355666666655543 3223579999999999999988874
Q ss_pred -----CCCc---ceEEEEeccccChhHHhhhcch-------------hhhhh------hhhhcC----------------
Q 004816 591 -----FRDT---FKAGASLYGVADLSMLRAETHK-------------FESRY------IDNLVG---------------- 627 (729)
Q Consensus 591 -----~~~~---~~a~v~~~~~~d~~~~~~~~~~-------------~~~~~------~~~~~~---------------- 627 (729)
-|+. +.++++..+..|+..+...... +...| +...+.
T Consensus 91 l~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~~~~~~~~g~~~~~l~gl~~~yP~l~~~~~~~l~~~g~~~~~~~~~~c~~ 170 (290)
T PF03583_consen 91 LAPSYAPELNRDLVGAAAGGPPADLAALLRALNGGPFAGLVPYALLGLAAAYPELDELLDSYLTPEGRALLDDARTRCLA 170 (290)
T ss_pred HhHHhCcccccceeEEeccCCccCHHHHHhccCCCccHhHHHHHHHHHHHhCccHHHHHHHHhhHHHHHHHHHHHhhhHH
Confidence 2443 7888888888776654321100 00000 000000
Q ss_pred ---------C------------------h---hhhhhcCc-ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC-
Q 004816 628 ---------S------------------E---KDYYEKSP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG- 675 (729)
Q Consensus 628 ---------~------------------~---~~~~~~sp-~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g- 675 (729)
. + ..+.+.+. ...-...+.|++|.||..|.+||+....++++.+.++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~P~~Pv~i~~g~~D~vvP~~~~~~l~~~~c~~G~ 250 (290)
T PF03583_consen 171 DIVAEYAFQDLFTGDTRYFKPGADLLADPAFRRALAENSLGMGGDWTPTVPVLIYQGTADEVVPPADTDALVAKWCAAGG 250 (290)
T ss_pred HHHHHhhhccccccchhccCChhhhhhhHHHHHHHHHhhccccCCCCCCCCEEEEecCCCCCCChHHHHHHHHHHHHcCC
Confidence 0 0 00011110 00011235899999999999999999999999999999
Q ss_pred CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhCCCCCC
Q 004816 676 LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVGHFDVA 717 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~~~~~~ 717 (729)
.+++++.+++.+|... ........++|+...|.+.+..
T Consensus 251 a~V~~~~~~~~~H~~~----~~~~~~~a~~Wl~~rf~G~~~~ 288 (290)
T PF03583_consen 251 ADVEYVRYPGGGHLGA----AFASAPDALAWLDDRFAGKPAT 288 (290)
T ss_pred CCEEEEecCCCChhhh----hhcCcHHHHHHHHHHHCCCCCC
Confidence 7999999999999632 2234467789999999877654
No 126
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.31 E-value=5.2e-11 Score=127.23 Aligned_cols=236 Identities=20% Similarity=0.230 Sum_probs=154.7
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc---hhhh---HHHhhCCcEEEEecCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSI---QYWTSRGWAFVDVNYGG 531 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~---~~~~---~~la~~G~~v~~~d~rG 531 (729)
...+.++-+ ||.+|...+|.|++ .++.|+++..+-.|-......+ .... ..|+.+||+|+..|.||
T Consensus 19 ~~~v~V~MR-DGvrL~~dIy~Pa~-------~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG 90 (563)
T COG2936 19 ERDVMVPMR-DGVRLAADIYRPAG-------AGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRG 90 (563)
T ss_pred eeeeeEEec-CCeEEEEEEEccCC-------CCCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccc
Confidence 355777888 99999999999987 5788999998833323221111 1122 37899999999999999
Q ss_pred CCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH
Q 004816 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML 610 (729)
Q Consensus 532 s~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~ 610 (729)
++++...+.... . .+.+|-.+.|+||.++++.+ .+|+++|.||+|+..+++|+ +|+.+|+++...+..|...-
T Consensus 91 ~~~SeG~~~~~~----~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d 164 (563)
T COG2936 91 RGGSEGVFDPES----S-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRD 164 (563)
T ss_pred cccCCcccceec----c-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeecccccccccccc
Confidence 888665543322 1 36899999999999999886 79999999999999999998 88899999988887663211
Q ss_pred ---------------hh-hcc--------hh------hhhhhh-hhc---------CCh-------------hhhhhcCc
Q 004816 611 ---------------RA-ETH--------KF------ESRYID-NLV---------GSE-------------KDYYEKSP 637 (729)
Q Consensus 611 ---------------~~-~~~--------~~------~~~~~~-~~~---------~~~-------------~~~~~~sp 637 (729)
+. ... .. ...+.. ..+ +.+ ..+...+-
T Consensus 165 ~~~~~G~~~~~~~~~W~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~~~~~~hp~~ddfW~~~~~ 244 (563)
T COG2936 165 DAFYGGGAELNFNLGWALTMLAPQPLTRIRPARLDRLAPLRVGAERWRDAPTELLEGEPYFLELWLEHPLRDDFWRRGDR 244 (563)
T ss_pred ccccCcchhhhhhHHHHhhhcccCcccccccccccccchhhhhhccccccccchhccCcccchhhhcCCCccchhhccCc
Confidence 00 000 00 000000 000 000 11222344
Q ss_pred ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc-----ccHHHHHHHHHHHHHHHhC
Q 004816 638 INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA-----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 638 ~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~-----~~~~~~~~~~~~fl~~~l~ 712 (729)
.....++++|+|++.|-.|.. ...+.++++.++.. +..+++-|- .|.-..- ......++...+||+-++.
T Consensus 245 ~~d~~~i~vP~L~i~gW~D~~--l~~~~~~~~~~~~r--~~~lvvgPw-~H~~~~~~~~~~~y~~~al~~~~~~l~~~~~ 319 (563)
T COG2936 245 VADLSKIKVPALVIGGWSDGY--LHTAIKLFAFLRSR--PVKLVVGPW-THGGPEWEGPGKDYGATALSWQDDFLDAYLD 319 (563)
T ss_pred ccccccCCCcEEEEccccccc--ccchHHHhhhcccC--CceeEEccc-ccCCCcccccccchhhhhhhhhHhhhhHhhh
Confidence 455778999999999999964 45677788887764 345666553 4542211 2234555555666666654
No 127
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=99.31 E-value=1.2e-10 Score=124.12 Aligned_cols=218 Identities=18% Similarity=0.164 Sum_probs=132.9
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCC----cEEEEecCCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGST 533 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G----~~v~~~d~rGs~ 533 (729)
.+.+.+.+..-|....+++|.|.+.. .+++|+|+++||..+...... ...+..+.+.| ..++.+|.....
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~y~-----~~~~PvlyllDG~~w~~~~~~-~~~ld~li~~g~i~P~ivV~id~~~~~ 253 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGDAA-----PEERPLAILLDGQFWAESMPV-WPALDSLTHRGQLPPAVYLLIDAIDTT 253 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCCCC-----CCCCCEEEEEECHHhhhcCCH-HHHHHHHHHcCCCCceEEEEECCCCcc
Confidence 45667777546778888999998732 357899999999765443322 23445566666 446777753211
Q ss_pred CCchhHHHhhccCCCcccHHH-H-HHHHHHHHhCC--CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 534 GYGREFRERLLGRWGIVDVND-C-CSCATFLVGSG--KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D-~-~~~~~~l~~~~--~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
....++. . ...+.+ + ..++.++.++. ..|+++.+|.|+||||+.|+.++. +|++|.++++.+|.+-+.
T Consensus 254 ~R~~el~-----~--~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ww~ 326 (411)
T PRK10439 254 HRSQELP-----C--NADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSFWWP 326 (411)
T ss_pred cccccCC-----c--hHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccceecC
Confidence 1111110 0 001111 1 23445555543 347889999999999999999987 999999999999864221
Q ss_pred HHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 609 MLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
... .. .... + .+.+... ....-...+++-+|..|... .+.++++++.|+++|.++++.+++| ||
T Consensus 327 ~~~---~~-~~~~---l---~~~l~~~----~~~~~~lr~~i~~G~~E~~~-~~~~~~l~~~L~~~G~~~~~~~~~G-GH 390 (411)
T PRK10439 327 HRG---GQ-QEGV---L---LEQLKAG----EVSARGLRIVLEAGRREPMI-MRANQALYAQLHPAGHSVFWRQVDG-GH 390 (411)
T ss_pred Ccc---CC-chhH---H---HHHHHhc----ccCCCCceEEEeCCCCCchH-HHHHHHHHHHHHHCCCcEEEEECCC-Cc
Confidence 100 00 0000 0 0111110 01111235788899988543 5778999999999999999999997 68
Q ss_pred ccCCcccHHHHHHHHHHHH
Q 004816 689 GFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl 707 (729)
.+ ..+...+..-+.|+
T Consensus 391 d~---~~Wr~~L~~~L~~l 406 (411)
T PRK10439 391 DA---LCWRGGLIQGLIDL 406 (411)
T ss_pred CH---HHHHHHHHHHHHHH
Confidence 64 23444444444444
No 128
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.30 E-value=1.1e-10 Score=144.99 Aligned_cols=215 Identities=15% Similarity=0.168 Sum_probs=130.5
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
..|.||++||.+.+. ..|...+..|.. +|.|+++|+||.|.+.................+++...+..++++ .+.
T Consensus 1370 ~~~~vVllHG~~~s~--~~w~~~~~~L~~-~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~~ 1444 (1655)
T PLN02980 1370 EGSVVLFLHGFLGTG--EDWIPIMKAISG-SARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEH--ITP 1444 (1655)
T ss_pred CCCeEEEECCCCCCH--HHHHHHHHHHhC-CCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHH--hCC
Confidence 357899999985544 346666676654 699999999976654321100000000112345555544444443 235
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh--H---Hhhh-------------cchhhhhhh-hh----h-
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS--M---LRAE-------------THKFESRYI-DN----L- 625 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~--~---~~~~-------------~~~~~~~~~-~~----~- 625 (729)
+++.++||||||.+++.++. +|++++++|+.++...+. . .... ...+...+. .. .
T Consensus 1445 ~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~~p~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 1524 (1655)
T PLN02980 1445 GKVTLVGYSMGARIALYMALRFSDKIEGAVIISGSPGLKDEVARKIRSAKDDSRARMLIDHGLEIFLENWYSGELWKSLR 1524 (1655)
T ss_pred CCEEEEEECHHHHHHHHHHHhChHhhCEEEEECCCCccCchHHHHHHhhhhhHHHHHHHhhhHHHHHHHhccHHHhhhhc
Confidence 78999999999999999988 999999999887642211 0 0000 000000000 00 0
Q ss_pred -------------c-CChh----hhhhc------CcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC------
Q 004816 626 -------------V-GSEK----DYYEK------SPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG------ 675 (729)
Q Consensus 626 -------------~-~~~~----~~~~~------sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g------ 675 (729)
. .+.. .+... +....+.++++|+|+++|++|..++ +.+.++.+.+.+..
T Consensus 1525 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dl~~~L~~I~~PtLlI~Ge~D~~~~-~~a~~~~~~i~~a~~~~~~~ 1603 (1655)
T PLN02980 1525 NHPHFNKIVASRLLHKDVPSLAKLLSDLSIGRQPSLWEDLKQCDTPLLLVVGEKDVKFK-QIAQKMYREIGKSKESGNDK 1603 (1655)
T ss_pred cCHHHHHHHHHHHhcCCHHHHHHHHHHhhhcccchHHHHHhhCCCCEEEEEECCCCccH-HHHHHHHHHccccccccccc
Confidence 0 0000 00000 1113367889999999999998774 66777777765421
Q ss_pred --CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 676 --LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 676 --~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
..++++++|++||... .++...+.+.+.+||.+.-.
T Consensus 1604 ~~~~a~lvvI~~aGH~~~-lE~Pe~f~~~I~~FL~~~~~ 1641 (1655)
T PLN02980 1604 GKEIIEIVEIPNCGHAVH-LENPLPVIRALRKFLTRLHN 1641 (1655)
T ss_pred cccceEEEEECCCCCchH-HHCHHHHHHHHHHHHHhccc
Confidence 1268999999999754 46677888999999988654
No 129
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.27 E-value=8.7e-10 Score=110.93 Aligned_cols=216 Identities=15% Similarity=0.166 Sum_probs=132.0
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
.++|.|.+ .+.+||++... + .|++++..+ ....+...+ +..+..+...++.+++... +.+.+
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~---~--~i~~~~~~~--~~~~~~~~~--------~~~G~~~~~~~g~l~v~~~--~~~~~ 64 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPG---G--RIYRVDPDT--GEVEVIDLP--------GPNGMAFDRPDGRLYVADS--GGIAV 64 (246)
T ss_dssp EEEEEEETTTTEEEEEETTT---T--EEEEEETTT--TEEEEEESS--------SEEEEEEECTTSEEEEEET--TCEEE
T ss_pred CcceEEECCCCEEEEEEcCC---C--EEEEEECCC--CeEEEEecC--------CCceEEEEccCCEEEEEEc--CceEE
Confidence 36899999 99999998733 3 588887772 233222222 0112222223456666653 34666
Q ss_pred EeCCCCCCCCeecCCCC-CC-CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeee
Q 004816 170 HSIDSKDSSPLPITPDY-GE-PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPR 247 (729)
Q Consensus 170 ~d~~~~~~~~~~lt~~~-~~-~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~ 247 (729)
+|+.+ ++.+.+.... +. ...+.++.+++|||+ |++...............||+++.+ ++.+.+..+....++.+
T Consensus 65 ~d~~~--g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~ 140 (246)
T PF08450_consen 65 VDPDT--GKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIA 140 (246)
T ss_dssp EETTT--TEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEE
T ss_pred EecCC--CcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceE
Confidence 69887 7666665431 11 357889999999999 4555433222111111689999998 77887777777778999
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCC-CeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENG-DVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g-~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~ 326 (729)
|||||+.|++... ....||.++++..+ .+...+.+...... ......++...+|+|+... . +...|++
T Consensus 141 ~s~dg~~lyv~ds-------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~g~pDG~~vD~~G~l~va~-~--~~~~I~~ 209 (246)
T PF08450_consen 141 FSPDGKTLYVADS-------FNGRIWRFDLDADGGELSNRRVFIDFPGG-PGYPDGLAVDSDGNLWVAD-W--GGGRIVV 209 (246)
T ss_dssp EETTSSEEEEEET-------TTTEEEEEEEETTTCCEEEEEEEEE-SSS-SCEEEEEEEBTTS-EEEEE-E--TTTEEEE
T ss_pred ECCcchheeeccc-------ccceeEEEeccccccceeeeeeEEEcCCC-CcCCCcceEcCCCCEEEEE-c--CCCEEEE
Confidence 9999999987763 23559999997333 35545544332200 0235678898999765443 3 3457999
Q ss_pred EEcCCCeEEEee
Q 004816 327 WIESNNEVLAIY 338 (729)
Q Consensus 327 ~d~~~g~~~~l~ 338 (729)
+++++.....+.
T Consensus 210 ~~p~G~~~~~i~ 221 (246)
T PF08450_consen 210 FDPDGKLLREIE 221 (246)
T ss_dssp EETTSCEEEEEE
T ss_pred ECCCccEEEEEc
Confidence 999854444444
No 130
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=2.1e-09 Score=109.37 Aligned_cols=242 Identities=13% Similarity=0.099 Sum_probs=139.7
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.++|.|.| .+.+||+++... .+++++..++ +.+.. .+.. . ......+.+..++.... .++
T Consensus 27 gEgP~w~~~~~~L~w~DI~~~-----~i~r~~~~~g-~~~~~~~p~~--~--------~~~~~~d~~g~Lv~~~~--g~~ 88 (307)
T COG3386 27 GEGPVWDPDRGALLWVDILGG-----RIHRLDPETG-KKRVFPSPGG--F--------SSGALIDAGGRLIACEH--GVR 88 (307)
T ss_pred ccCccCcCCCCEEEEEeCCCC-----eEEEecCCcC-ceEEEECCCC--c--------ccceeecCCCeEEEEcc--ccE
Confidence 48999999 899999998443 4888877632 22222 2222 1 01112233333444322 367
Q ss_pred EEeCCCCCCCC-eecCCCC-CCCceeeecceecCCCCEEEEEEec--cCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 169 KHSIDSKDSSP-LPITPDY-GEPLVSYADGIFDPRFNRYVTVRED--RRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~--~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
+++++. +.. +.++... +.+..+.+|.+..|||+.++-.+.. ...........||+++.+++..+.+.......+
T Consensus 89 ~~~~~~--~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N 166 (307)
T COG3386 89 LLDPDT--GGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN 166 (307)
T ss_pred EEeccC--CceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC
Confidence 777665 444 5555432 3334678999999999975555541 001111123579999987665666555566778
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec-CCCCeeeeE--Eec-CCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRV--CVA-GFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~-~~g~~~~~~--~~~-~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
+.+|||||+.++++.+. ...||.++++ .++...... ... ..+ +.....+-..||.++..... +
T Consensus 167 Gla~SpDg~tly~aDT~-------~~~i~r~~~d~~~g~~~~~~~~~~~~~~~----G~PDG~~vDadG~lw~~a~~--~ 233 (307)
T COG3386 167 GLAFSPDGKTLYVADTP-------ANRIHRYDLDPATGPIGGRRGFVDFDEEP----GLPDGMAVDADGNLWVAAVW--G 233 (307)
T ss_pred ceEECCCCCEEEEEeCC-------CCeEEEEecCcccCccCCcceEEEccCCC----CCCCceEEeCCCCEEEeccc--C
Confidence 99999999999888742 3458998886 234332221 221 222 45556677777765543333 3
Q ss_pred ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 321 FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 321 ~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
...|.++++++.....+.-.....+.+.+.- . +.+.||+++.+.+
T Consensus 234 g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG-------~----~~~~L~iTs~~~~ 278 (307)
T COG3386 234 GGRVVRFNPDGKLLGEIKLPVKRPTNPAFGG-------P----DLNTLYITSARSG 278 (307)
T ss_pred CceEEEECCCCcEEEEEECCCCCCccceEeC-------C----CcCEEEEEecCCC
Confidence 4689999998555555441112222233221 0 4467888877653
No 131
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.25 E-value=1.2e-08 Score=105.76 Aligned_cols=244 Identities=7% Similarity=0.011 Sum_probs=134.8
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
..|+++++.++.....++.|+++++.+ ++... +... .....+.|+|||+.++...... ..|+++
T Consensus 36 l~~~~dg~~l~~~~~~~~~v~~~d~~~--~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~~~~~--------~~l~~~ 100 (300)
T TIGR03866 36 ITLSKDGKLLYVCASDSDTIQVIDLAT--GEVIGTLPSG-----PDPELFALHPNGKILYIANEDD--------NLVTVI 100 (300)
T ss_pred eEECCCCCEEEEEECCCCeEEEEECCC--CcEEEeccCC-----CCccEEEECCCCCEEEEEcCCC--------CeEEEE
Confidence 345555555656666677899999987 55433 3322 1124568999999765554322 469999
Q ss_pred EcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 227 ALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 227 dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
|+.+++...............|+|||+.+++...+ ...++.+|.. +++... ....+ .....+.|+
T Consensus 101 d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~-------~~~~~~~d~~-~~~~~~-~~~~~------~~~~~~~~s 165 (300)
T TIGR03866 101 DIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET-------TNMAHFIDTK-TYEIVD-NVLVD------QRPRFAEFT 165 (300)
T ss_pred ECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC-------CCeEEEEeCC-CCeEEE-EEEcC------CCccEEEEC
Confidence 99876543222222234568999999998876522 2236667876 555421 11111 223457899
Q ss_pred CCCc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 307 SKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 307 pDG~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
|||+ +++.... . ..+.++|+++++.. .+....... .+.. .....+.|.+ +++.+++....++ .|.++|
T Consensus 166 ~dg~~l~~~~~~-~--~~v~i~d~~~~~~~~~~~~~~~~~-~~~~-~~~~~i~~s~---dg~~~~~~~~~~~--~i~v~d 235 (300)
T TIGR03866 166 ADGKELWVSSEI-G--GTVSVIDVATRKVIKKITFEIPGV-HPEA-VQPVGIKLTK---DGKTAFVALGPAN--RVAVVD 235 (300)
T ss_pred CCCCEEEEEcCC-C--CEEEEEEcCcceeeeeeeeccccc-cccc-CCccceEECC---CCCEEEEEcCCCC--eEEEEE
Confidence 9999 5554433 2 35778898887643 332111000 0000 0011234443 6666665543333 577778
Q ss_pred CCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 385 DFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 385 ~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.++++..........+..+ ..+++..++.++.. ...|.++|+.+++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~--~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 236 AKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGV--SNDVSVIDVAALKV 283 (300)
T ss_pred CCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCC--CCeEEEEECCCCcE
Confidence 8877765332222234444 33344444444322 24688899888774
No 132
>PRK05855 short chain dehydrogenase; Validated
Probab=99.24 E-value=1.4e-10 Score=132.85 Aligned_cols=217 Identities=13% Similarity=0.097 Sum_probs=122.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRW 547 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~ 547 (729)
+|.++++..+.+. ..|.||++||.+.+. ..|......| ..||.|+++|+||.|.+.... ....+
T Consensus 11 ~g~~l~~~~~g~~----------~~~~ivllHG~~~~~--~~w~~~~~~L-~~~~~Vi~~D~~G~G~S~~~~---~~~~~ 74 (582)
T PRK05855 11 DGVRLAVYEWGDP----------DRPTVVLVHGYPDNH--EVWDGVAPLL-ADRFRVVAYDVRGAGRSSAPK---RTAAY 74 (582)
T ss_pred CCEEEEEEEcCCC----------CCCeEEEEcCCCchH--HHHHHHHHHh-hcceEEEEecCCCCCCCCCCC---ccccc
Confidence 7888887665331 247899999985443 4466677777 678999999999866543211 00011
Q ss_pred C-cccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEecccc-Chh-HHhhh--------
Q 004816 548 G-IVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVA-DLS-MLRAE-------- 613 (729)
Q Consensus 548 ~-~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~-d~~-~~~~~-------- 613 (729)
. ....+|+..+++.+. . ..++.|+|||+||.+++.++.. +.++...+..++.. +.. .+...
T Consensus 75 ~~~~~a~dl~~~i~~l~----~-~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (582)
T PRK05855 75 TLARLADDFAAVIDAVS----P-DRPVHLLAHDWGSIQGWEAVTRPRAAGRIASFTSVSGPSLDHVGFWLRSGLRRPTPR 149 (582)
T ss_pred CHHHHHHHHHHHHHHhC----C-CCcEEEEecChHHHHHHHHHhCccchhhhhhheeccCCchHHHHHHHhhcccccchh
Confidence 0 012455555555431 1 2359999999999999877764 34444444333211 000 00000
Q ss_pred -----cchhhh----------------------hhhhhhcC-------C--------------hhhhhhc----Cccccc
Q 004816 614 -----THKFES----------------------RYIDNLVG-------S--------------EKDYYEK----SPINFV 641 (729)
Q Consensus 614 -----~~~~~~----------------------~~~~~~~~-------~--------------~~~~~~~----sp~~~~ 641 (729)
...... ..+..... . ...+... ......
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (582)
T PRK05855 150 RLARALGQLLRSWYIYLFHLPVLPELLWRLGLGRAWPRLLRRVEGTPVDPIPTQTTLSDGAHGVKLYRANMIRSLSRPRE 229 (582)
T ss_pred hhhHHHHHHhhhHHHHHHhCCCCcHHHhccchhhHHHHhhhhccCCCcchhhhhhhhccccchHHHHHhhhhhhhccCcc
Confidence 000000 00000000 0 0000000 000113
Q ss_pred CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHHh
Q 004816 642 DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 642 ~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
..+++|+|+++|++|..+|+.....+.+.+. ..++++++ +||... .+....+.+.+.+|+.+.-
T Consensus 230 ~~~~~P~lii~G~~D~~v~~~~~~~~~~~~~----~~~~~~~~-~gH~~~-~e~p~~~~~~i~~fl~~~~ 293 (582)
T PRK05855 230 RYTDVPVQLIVPTGDPYVRPALYDDLSRWVP----RLWRREIK-AGHWLP-MSHPQVLAAAVAEFVDAVE 293 (582)
T ss_pred CCccCceEEEEeCCCcccCHHHhccccccCC----cceEEEcc-CCCcch-hhChhHHHHHHHHHHHhcc
Confidence 4478999999999999999988877765543 34666665 689654 4566778888889988743
No 133
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.23 E-value=9.3e-11 Score=116.20 Aligned_cols=210 Identities=18% Similarity=0.269 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCCCCCcc-ccchhhhHHHhhCCcEEEEecCCCC-CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC--
Q 004816 491 KPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG-- 566 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~-~~~~~~~~~la~~G~~v~~~d~rGs-~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-- 566 (729)
+..+||++-|-..+... ++...+++.|...||.|+.+.++-| .|+|..-.+ .+++|+.++++||+...
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~~g 103 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEKGG 103 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS--
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhhcc
Confidence 34589999885444333 4555678888778999999998753 455544332 35899999999999983
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh--C----CCcceEEEEeccccChhHHhhhcch---hhhh--hhhhhc--C--C---
Q 004816 567 KADEKRLCITGGSAGGYTTLAALA--F----RDTFKAGASLYGVADLSMLRAETHK---FESR--YIDNLV--G--S--- 628 (729)
Q Consensus 567 ~~d~~ri~i~G~S~GG~~a~~~~~--~----~~~~~a~v~~~~~~d~~~~~~~~~~---~~~~--~~~~~~--~--~--- 628 (729)
....++|+|||||-|+.-++.++. . ...+.++|+.+|++|-..+...... +... ....++ + +
T Consensus 104 ~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~~~~~~~~~~~~v~~A~~~i~~g~~~~~l 183 (303)
T PF08538_consen 104 HFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILNFLGEREAYEELVALAKELIAEGKGDEIL 183 (303)
T ss_dssp ----S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTTSHHH---HHHHHHHHHHHHHCT-TT-GG
T ss_pred ccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhhcccchHHHHHHHHHHHHHHHcCCCCcee
Confidence 235789999999999999999997 2 2679999999999986544322111 1000 000000 0 0
Q ss_pred hhhhh---h-cCcc----------------------------cccCCCCCCEEEEEeCCCCCCChH-HHHHHHHHHHhCC
Q 004816 629 EKDYY---E-KSPI----------------------------NFVDKFSCPIILFQGLEDKVVPPD-QARKIYKALKENG 675 (729)
Q Consensus 629 ~~~~~---~-~sp~----------------------------~~~~~i~~PvL~i~G~~D~~vp~~-~~~~~~~~l~~~g 675 (729)
+..+. . ..|+ ....++.+|+|++.+.+|..||.. +.+++.++++.+-
T Consensus 184 p~~~~~~~~~~~PiTA~Rf~SL~s~~gdDD~FSSDL~de~l~~tfG~v~~plLvl~Sg~DEyvP~~vdk~~Ll~rw~~a~ 263 (303)
T PF08538_consen 184 PREFTPLVFYDTPITAYRFLSLASPGGDDDYFSSDLSDERLKKTFGKVSKPLLVLYSGKDEYVPPWVDKEALLERWKAAT 263 (303)
T ss_dssp ----GGTTT-SS---HHHHHT-S-SSHHHHTHHHHHTT-HHHHTGGG--S-EEEEEE--TT-------------------
T ss_pred eccccccccCCCcccHHHHHhccCCCCcccccCCCCCHHHHHHHhccCCCceEEEecCCCceeccccccccccccccccc
Confidence 00000 0 1111 126678899999999999999874 4466777777643
Q ss_pred C----CEEEEEECCCCcccCCccc---HHHHHHHHHHHHH
Q 004816 676 L----PVALVEYEGEQHGFRKAEN---IKFTLEQQMVFFA 708 (729)
Q Consensus 676 ~----~~~~~~~~~~gH~~~~~~~---~~~~~~~~~~fl~ 708 (729)
. .....++||+.|.+..++. .+...+++..||+
T Consensus 264 ~~~~~s~~S~iI~GA~H~~~~~~~~~~~~~l~~rV~~fl~ 303 (303)
T PF08538_consen 264 NPKIWSPLSGIIPGASHNVSGPSQAEAREWLVERVVKFLK 303 (303)
T ss_dssp ----------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccCC
Confidence 2 2346689999999876543 2356666666663
No 134
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.23 E-value=7.2e-09 Score=107.46 Aligned_cols=252 Identities=13% Similarity=0.056 Sum_probs=136.7
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+.++.|+| ++.+|.... ..+...+|. .. +++....++..... ....+.++++.++.....++.|+
T Consensus 32 ~~~~l~~~~dg~~l~~~~~---~~~~v~~~d--~~-~~~~~~~~~~~~~~-------~~~~~~~~g~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCAS---DSDTIQVID--LA-TGEVIGTLPSGPDP-------ELFALHPNGKILYIANEDDNLVT 98 (300)
T ss_pred CCCceEECCCCCEEEEEEC---CCCeEEEEE--CC-CCcEEEeccCCCCc-------cEEEECCCCCEEEEEcCCCCeEE
Confidence 456789999 666665543 234544444 33 12332222211111 11233344445555555567899
Q ss_pred EEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeee
Q 004816 169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPR 247 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~ 247 (729)
++|+.+ ++. ..+... .......|+|||+.+++..... ..++.++..+++...............
T Consensus 99 ~~d~~~--~~~~~~~~~~-----~~~~~~~~~~dg~~l~~~~~~~--------~~~~~~d~~~~~~~~~~~~~~~~~~~~ 163 (300)
T TIGR03866 99 VIDIET--RKVLAEIPVG-----VEPEGMAVSPDGKIVVNTSETT--------NMAHFIDTKTYEIVDNVLVDQRPRFAE 163 (300)
T ss_pred EEECCC--CeEEeEeeCC-----CCcceEEECCCCCEEEEEecCC--------CeEEEEeCCCCeEEEEEEcCCCccEEE
Confidence 999986 432 222211 2235678999999877765432 246667887765543222222334578
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC--CCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF--DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~--~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
|+|||++|++.. .. ...|+++|++ +++.......... ... ......+.|+|||+.+|+... +...|.
T Consensus 164 ~s~dg~~l~~~~-~~------~~~v~i~d~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~--~~~~i~ 232 (300)
T TIGR03866 164 FTADGKELWVSS-EI------GGTVSVIDVA-TRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALG--PANRVA 232 (300)
T ss_pred ECCCCCEEEEEc-CC------CCEEEEEEcC-cceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcC--CCCeEE
Confidence 999999887654 21 2459999998 6654221111110 000 012345789999995444433 224588
Q ss_pred EEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce-Eeec
Q 004816 326 KWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL-SLLD 394 (729)
Q Consensus 326 ~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~-~~lt 394 (729)
++|.++++............ .+.|.+ +++.|+.....+| .|.++|+++++. +.+.
T Consensus 233 v~d~~~~~~~~~~~~~~~~~---------~~~~~~---~g~~l~~~~~~~~--~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 233 VVDAKTYEVLDYLLVGQRVW---------QLAFTP---DEKYLLTTNGVSN--DVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCcEEEEEEeCCCcc---------eEEECC---CCCEEEEEcCCCC--eEEEEECCCCcEEEEEE
Confidence 88988877654332211122 233433 6777765554455 467778888774 4444
No 135
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=99.22 E-value=1.4e-11 Score=124.44 Aligned_cols=219 Identities=20% Similarity=0.269 Sum_probs=129.1
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCC----cEEEEecCCCCCCCchhHHHh-
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRG----WAFVDVNYGGSTGYGREFRER- 542 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G----~~v~~~d~rGs~g~g~~~~~~- 542 (729)
-|.....++|.|++. . +.+++|+|+++||.............++.+...| ..++.++..+.......|...
T Consensus 4 Lg~~~~~~VylP~~y--~--~~~~~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~ 79 (251)
T PF00756_consen 4 LGRDRRVWVYLPPGY--D--PSKPYPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPA 79 (251)
T ss_dssp TTEEEEEEEEECTTG--G--TTTTEEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSB
T ss_pred cCCeEEEEEEECCCC--C--CCCCCEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccc
Confidence 477888999999883 2 4788999999999501110111122333344443 556666654433111111110
Q ss_pred -----hccCCCcccHHHH--HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-HHhhh
Q 004816 543 -----LLGRWGIVDVNDC--CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-MLRAE 613 (729)
Q Consensus 543 -----~~~~~~~~~~~D~--~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-~~~~~ 613 (729)
.....+...+.+. .+++.++.++..+++++.+|+|+||||+.|+.++. ||+.|.++++.+|..+.. .++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~~~~w~~ 159 (251)
T PF00756_consen 80 GSSRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPSPSLWGP 159 (251)
T ss_dssp CTTCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETTHCHHHH
T ss_pred ccccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccccccccccCc
Confidence 0001111122332 35667777777777666999999999999999988 999999999999987654 11111
Q ss_pred cchhhhhhhhhhcCChhhhhhcCcccc-----cCCCCCCEEEEEeCCCCCCC----------hHHHHHHHHHHHhCCCCE
Q 004816 614 THKFESRYIDNLVGSEKDYYEKSPINF-----VDKFSCPIILFQGLEDKVVP----------PDQARKIYKALKENGLPV 678 (729)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~sp~~~-----~~~i~~PvL~i~G~~D~~vp----------~~~~~~~~~~l~~~g~~~ 678 (729)
.+...+...++... ...-..++++.+|+.|.... .....++.+.|+..|.+.
T Consensus 160 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~G~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 226 (251)
T PF00756_consen 160 -------------SDDEAWKENDPFDLIKALSQKKKPLRIYLDVGTKDEFGGWEDSAQILQFLANNRELAQLLKAKGIPH 226 (251)
T ss_dssp -------------STCGHHGGCHHHHHHHHHHHTTSEEEEEEEEETTSTTHHCSHHHHHHHHHHHHHHHHHHCCCEECTT
T ss_pred -------------CCcHHhhhccHHHHhhhhhcccCCCeEEEEeCCCCcccccccCHHHHHHHHHhHhhHHHHHHcCCCc
Confidence 01111222222221 12234578999999998332 123445555666677888
Q ss_pred EEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 679 ALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 679 ~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
.+..++| +|.+ ..+...+...+.||
T Consensus 227 ~~~~~~G-~H~~---~~W~~~l~~~L~~~ 251 (251)
T PF00756_consen 227 TYHVFPG-GHDW---AYWRRRLPDALPWM 251 (251)
T ss_dssp ESEEEHS-ESSH---HHHHHHHHHHHHHH
T ss_pred eEEEecC-ccch---hhHHHHHHHHHhhC
Confidence 9999984 6754 34566666666664
No 136
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=99.20 E-value=1.2e-10 Score=122.82 Aligned_cols=190 Identities=19% Similarity=0.193 Sum_probs=106.1
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc------hh-HHHh------hc------cC----
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG------RE-FRER------LL------GR---- 546 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g------~~-~~~~------~~------~~---- 546 (729)
.++|+||+-||.. .....|...+..||++||.|+++++|...... .. .... .. ..
T Consensus 98 ~~~PvvIFSHGlg--g~R~~yS~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (379)
T PF03403_consen 98 GKFPVVIFSHGLG--GSRTSYSAICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPE 175 (379)
T ss_dssp S-EEEEEEE--TT----TTTTHHHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GG
T ss_pred CCCCEEEEeCCCC--cchhhHHHHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccch
Confidence 6799999999973 44567888999999999999999999532211 10 0000 00 00
Q ss_pred --------CCcccHHHHHHHHHHHHh--------------------CCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEE
Q 004816 547 --------WGIVDVNDCCSCATFLVG--------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAG 598 (729)
Q Consensus 547 --------~~~~~~~D~~~~~~~l~~--------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~ 598 (729)
+-.....|+..+++.|.+ ++.+|.++|+++|||+||.+++.++....+|+++
T Consensus 176 ~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d~r~~~~ 255 (379)
T PF03403_consen 176 EEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQDTRFKAG 255 (379)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH-TT--EE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhccCcceE
Confidence 001126677778877753 1346788999999999999999999877899999
Q ss_pred EEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCE
Q 004816 599 ASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPV 678 (729)
Q Consensus 599 v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~ 678 (729)
|++.|..-.. + .+. ...++.|+|+|+.+. . ....+...+.+ +...+...
T Consensus 256 I~LD~W~~Pl------------------~-~~~---------~~~i~~P~L~InSe~-f-~~~~~~~~~~~-~~~~~~~~ 304 (379)
T PF03403_consen 256 ILLDPWMFPL------------------G-DEI---------YSKIPQPLLFINSES-F-QWWENIFRMKK-VISNNKES 304 (379)
T ss_dssp EEES---TTS--------------------GGG---------GGG--S-EEEEEETT-T---HHHHHHHHT-T--TTS-E
T ss_pred EEeCCcccCC------------------C-ccc---------ccCCCCCEEEEECcc-c-CChhhHHHHHH-HhccCCCc
Confidence 9998853210 0 000 134678999998874 3 23333333333 33345567
Q ss_pred EEEEECCCCccc-C-----Cc----------------ccHHHHHHHHHHHHHHHhC
Q 004816 679 ALVEYEGEQHGF-R-----KA----------------ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 679 ~~~~~~~~gH~~-~-----~~----------------~~~~~~~~~~~~fl~~~l~ 712 (729)
.++.+.|..|.- . .+ .......+.+++||+++|+
T Consensus 305 ~~~ti~gt~H~s~sD~~ll~P~~l~~~~~~~g~~dp~~a~~i~~~~~l~FL~~~L~ 360 (379)
T PF03403_consen 305 RMLTIKGTAHLSFSDFPLLSPWLLGKFLGLKGSIDPERALRINNRASLAFLRRHLG 360 (379)
T ss_dssp EEEEETT--GGGGSGGGGTS-HHHHHHTTSS-SS-HHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEECCCcCCCcchhhhhhHHHHHHHhccccCcCHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999951 1 01 1133456678999999987
No 137
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.18 E-value=8.2e-11 Score=106.18 Aligned_cols=203 Identities=13% Similarity=0.092 Sum_probs=123.3
Q ss_pred CEEEEEcCCCCCCccccchhhhHHH-hhCCcEEEEecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~l-a~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~~l~~~~~~d~ 570 (729)
-.|+++.|.-++ ....|.+....+ ...-+.+++.|.+|. |.+-. .....+. .-..|...+++-+... +.
T Consensus 43 ~~iLlipGalGs-~~tDf~pql~~l~k~l~~TivawDPpGY---G~SrP--P~Rkf~~~ff~~Da~~avdLM~aL---k~ 113 (277)
T KOG2984|consen 43 NYILLIPGALGS-YKTDFPPQLLSLFKPLQVTIVAWDPPGY---GTSRP--PERKFEVQFFMKDAEYAVDLMEAL---KL 113 (277)
T ss_pred ceeEeccccccc-ccccCCHHHHhcCCCCceEEEEECCCCC---CCCCC--CcccchHHHHHHhHHHHHHHHHHh---CC
Confidence 357777786433 344555533333 333499999999864 33211 1111111 1257777788777664 56
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC---hhHHh------------hhcchhhhhhhhhhc----C---
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD---LSMLR------------AETHKFESRYIDNLV----G--- 627 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d---~~~~~------------~~~~~~~~~~~~~~~----~--- 627 (729)
+++.|+|+|-||.+|+.+|+ +++.+...|...+-.- ...+. .....++..|....+ .
T Consensus 114 ~~fsvlGWSdGgiTalivAak~~e~v~rmiiwga~ayvn~~~~ma~kgiRdv~kWs~r~R~P~e~~Yg~e~f~~~wa~wv 193 (277)
T KOG2984|consen 114 EPFSVLGWSDGGITALIVAAKGKEKVNRMIIWGAAAYVNHLGAMAFKGIRDVNKWSARGRQPYEDHYGPETFRTQWAAWV 193 (277)
T ss_pred CCeeEeeecCCCeEEEEeeccChhhhhhheeecccceecchhHHHHhchHHHhhhhhhhcchHHHhcCHHHHHHHHHHHH
Confidence 89999999999999998888 8888877777655321 11111 111112222211110 0
Q ss_pred C-hhhhhhc---Cc-ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHH
Q 004816 628 S-EKDYYEK---SP-INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQ 702 (729)
Q Consensus 628 ~-~~~~~~~---sp-~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~ 702 (729)
+ -..+... .- -.-+.+++||+||+||+.|+.|+..+..-+...++ -.+++++|.++|.|.- ...+++...
T Consensus 194 D~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kDp~~~~~hv~fi~~~~~----~a~~~~~peGkHn~hL-rya~eFnkl 268 (277)
T KOG2984|consen 194 DVVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKDPFCGDPHVCFIPVLKS----LAKVEIHPEGKHNFHL-RYAKEFNKL 268 (277)
T ss_pred HHHHHHhhcCCCchHhhhcccccCCeeEeeCCcCCCCCCCCccchhhhcc----cceEEEccCCCcceee-echHHHHHH
Confidence 0 0000000 00 11267899999999999999999887765555444 3489999999999854 345677778
Q ss_pred HHHHHHH
Q 004816 703 QMVFFAR 709 (729)
Q Consensus 703 ~~~fl~~ 709 (729)
+++||++
T Consensus 269 v~dFl~~ 275 (277)
T KOG2984|consen 269 VLDFLKS 275 (277)
T ss_pred HHHHHhc
Confidence 8888875
No 138
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.18 E-value=5.5e-10 Score=121.83 Aligned_cols=211 Identities=15% Similarity=0.115 Sum_probs=125.5
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc---hhhhHHHhhCCcEEEEecCCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---NLSIQYWTSRGWAFVDVNYGGST 533 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~---~~~~~~la~~G~~v~~~d~rGs~ 533 (729)
+|.++-+... .+..+.|.|... ....+.||++||.......... +.++.+|+++||.|+++|+||.+
T Consensus 163 Tpg~VV~~~~----~~eLi~Y~P~t~------~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~qGf~V~~iDwrgpg 232 (532)
T TIGR01838 163 TPGAVVFENE----LFQLIQYEPTTE------TVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQGHTVFVISWRNPD 232 (532)
T ss_pred CCCeEEEECC----cEEEEEeCCCCC------cCCCCcEEEECcccccceeeecccchHHHHHHHHCCcEEEEEECCCCC
Confidence 3444445442 344455777641 2223457788886332222221 25789999999999999999754
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHH----HHh-C-CCcceEEEEeccccCh
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA----ALA-F-RDTFKAGASLYGVADL 607 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~----~~~-~-~~~~~a~v~~~~~~d~ 607 (729)
.....+ .+.....+++.++++++.+. .+.+++.++|||+||.++.. ++. + ++++++++++....|+
T Consensus 233 ~s~~~~------~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 233 ASQADK------TFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred cccccC------ChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEEEEecCcCC
Confidence 332211 11122245688889988865 35689999999999998522 233 4 7789999988876654
Q ss_pred hHHhh---------------hc---------------------chhhhhhhhhhc-CCh---------------------
Q 004816 608 SMLRA---------------ET---------------------HKFESRYIDNLV-GSE--------------------- 629 (729)
Q Consensus 608 ~~~~~---------------~~---------------------~~~~~~~~~~~~-~~~--------------------- 629 (729)
..... .. ..+...+....+ ++.
T Consensus 305 ~~~G~l~~f~~~~~~~~~e~~~~~~G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~fdll~Wn~D~t~lP~~~~ 384 (532)
T TIGR01838 305 SDPGELGVFVDEEIVAGIERQNGGGGYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVPFDLLFWNSDSTNLPGKMH 384 (532)
T ss_pred CCcchhhhhcCchhHHHHHHHHHhcCCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccchhHHHHhccCccchHHHH
Confidence 32100 00 000010111000 100
Q ss_pred -----hhhhhcCc----------ccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 630 -----KDYYEKSP----------INFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 630 -----~~~~~~sp----------~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
..|.++.. ...+.+|++|+|+++|++|.++|++.+..+.+.+. ..+.++++++||.
T Consensus 385 ~~~lr~ly~~N~L~~G~~~v~g~~~dL~~I~vPvLvV~G~~D~IvP~~sa~~l~~~i~----~~~~~vL~~sGHi 455 (532)
T TIGR01838 385 NFYLRNLYLQNALTTGGLEVCGVRLDLSKVKVPVYIIATREDHIAPWQSAYRGAALLG----GPKTFVLGESGHI 455 (532)
T ss_pred HHHHHHHHhcCCCcCCeeEECCEecchhhCCCCEEEEeeCCCCcCCHHHHHHHHHHCC----CCEEEEECCCCCc
Confidence 01111111 11266789999999999999999999988877654 2356788999996
No 139
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.15 E-value=5.8e-08 Score=102.42 Aligned_cols=257 Identities=10% Similarity=0.046 Sum_probs=131.9
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
++++++.++......+.|..++++.. +..+.+..... ........++|||++|+...... ..|.+++++
T Consensus 42 ~spd~~~lyv~~~~~~~i~~~~~~~~-g~l~~~~~~~~--~~~p~~i~~~~~g~~l~v~~~~~--------~~v~v~~~~ 110 (330)
T PRK11028 42 ISPDKRHLYVGVRPEFRVLSYRIADD-GALTFAAESPL--PGSPTHISTDHQGRFLFSASYNA--------NCVSVSPLD 110 (330)
T ss_pred ECCCCCEEEEEECCCCcEEEEEECCC-CceEEeeeecC--CCCceEEEECCCCCEEEEEEcCC--------CeEEEEEEC
Confidence 44445556555555677877777531 43332221100 11235678999999876554322 457777775
Q ss_pred C-Cce---EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee---EEecCCCCCccccccC
Q 004816 230 G-QNI---QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR---VCVAGFDPTIVESPTE 302 (729)
Q Consensus 230 ~-g~~---~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~---~~~~~~~~~~~~~~~~ 302 (729)
. +.. .....+........++|||++|+.... ....|+++|++..+.+... ....... .....
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-------~~~~v~v~d~~~~g~l~~~~~~~~~~~~g----~~p~~ 179 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-------KEDRIRLFTLSDDGHLVAQEPAEVTTVEG----AGPRH 179 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-------CCCEEEEEEECCCCcccccCCCceecCCC----CCCce
Confidence 3 322 111222222334579999998876552 2345999999733443210 0011111 34467
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec---cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
+.|+|||+.+|+.+...+.-.+|.++..+++.+.+.. .......+.|.. .+.+.| +++.+|...+.++...
T Consensus 180 ~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~i~~~p---dg~~lyv~~~~~~~I~ 253 (330)
T PRK11028 180 MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA---DIHITP---DGRHLYACDRTASLIS 253 (330)
T ss_pred EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce---eEEECC---CCCEEEEecCCCCeEE
Confidence 8999999966666552444445555443555433321 111112233321 344544 6666666544456667
Q ss_pred EEEEECCCCceEeeccC--CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 380 LGILDDFGHSLSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 380 ly~~d~~~g~~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
+|.++.+++..+.+..- ......+ ..++++.+|.+...++.-.+|.++..++.++
T Consensus 254 v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 254 VFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred EEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 77776666554433211 1111223 3334445555554444555777776666653
No 140
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.15 E-value=2.7e-10 Score=113.15 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=104.3
Q ss_pred cEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEE
Q 004816 522 WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGAS 600 (729)
Q Consensus 522 ~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~ 600 (729)
|.|+++|.||.+..... ....+.....+|+.+.++.+++...+ +++.++||||||.+++.++. +|++++++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 78999999987654421 11122334588999999999887444 45999999999999999998 9999999999
Q ss_pred ecccc---C------hhH-Hhh-----hcch--------hhhhh------hhhh-cC------------C----------
Q 004816 601 LYGVA---D------LSM-LRA-----ETHK--------FESRY------IDNL-VG------------S---------- 628 (729)
Q Consensus 601 ~~~~~---d------~~~-~~~-----~~~~--------~~~~~------~~~~-~~------------~---------- 628 (729)
..+.. . +.. ... .... ..... .... .. .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (230)
T PF00561_consen 75 ISPPPDLPDGLWNRIWPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARFAETDAFDNM 154 (230)
T ss_dssp ESESSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHH
T ss_pred EeeeccchhhhhHHHHhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHHHHHHHHhhh
Confidence 99851 0 000 000 0000 00000 0000 00 0
Q ss_pred ----hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 629 ----EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 629 ----~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
...+...++...+.++++|+|+++|++|..+|++....+.+.+. ..+++++++.||..
T Consensus 155 ~~~~~~~~~~~~~~~~l~~i~~p~l~i~~~~D~~~p~~~~~~~~~~~~----~~~~~~~~~~GH~~ 216 (230)
T PF00561_consen 155 FWNALGYFSVWDPSPALSNIKVPTLIIWGEDDPLVPPESSEQLAKLIP----NSQLVLIEGSGHFA 216 (230)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTSEEEEEEETTCSSSHHHHHHHHHHHST----TEEEEEETTCCSTH
T ss_pred ccccccccccccccccccccCCCeEEEEeCCCCCCCHHHHHHHHHhcC----CCEEEECCCCChHH
Confidence 00111122234467899999999999999999988888665554 46899999999974
No 141
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.2e-07 Score=94.12 Aligned_cols=284 Identities=12% Similarity=0.058 Sum_probs=159.5
Q ss_pred CCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-E
Q 004816 79 LTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-T 156 (729)
Q Consensus 79 lt~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 156 (729)
++.-++......+.-+.|+| ++.+|-+. ++++.|...-++.+..+ |+...+ ... ...+..-+..+++.+ +
T Consensus 30 l~~~~~v~~~~nptyl~~~~~~~~LY~v~-~~~~~ggvaay~iD~~~-G~Lt~l-n~~-----~~~g~~p~yvsvd~~g~ 101 (346)
T COG2706 30 LSLLQLVAELGNPTYLAVNPDQRHLYVVN-EPGEEGGVAAYRIDPDD-GRLTFL-NRQ-----TLPGSPPCYVSVDEDGR 101 (346)
T ss_pred cchhhhccccCCCceEEECCCCCEEEEEE-ecCCcCcEEEEEEcCCC-CeEEEe-ecc-----ccCCCCCeEEEECCCCC
Confidence 44444444435677888999 55565554 45567887888887652 332222 110 011111133455544 4
Q ss_pred EEEEEC-CCCcEEEEeCCCCCCCCeecC---CCCCC-Ccee-----eecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 157 VIFSNY-KDQRLYKHSIDSKDSSPLPIT---PDYGE-PLVS-----YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 157 i~~~~~-~~~~l~~~d~~~~~~~~~~lt---~~~~~-~~~~-----~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.+|+.. ..+.|-++.++.. |....+. ...+. +..+ .-...+.|||++|+.+.- . ...|+++
T Consensus 102 ~vf~AnY~~g~v~v~p~~~d-G~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL-G-------~Dri~~y 172 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQAD-GSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL-G-------TDRIFLY 172 (346)
T ss_pred EEEEEEccCceEEEEEcccC-CccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec-C-------CceEEEE
Confidence 555544 4567777777542 3332221 11100 0111 223459999998655532 2 2457777
Q ss_pred EcCCCceEEeee----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCC--cccc
Q 004816 227 ALNGQNIQVLVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT--IVES 299 (729)
Q Consensus 227 dl~~g~~~~lt~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~--~~~~ 299 (729)
+++.|.....+. ....-....|.|+||.. |+-..- +++|-++..+. .|++.++..+...+.+ ...+
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~a-Y~v~EL------~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~ 245 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYA-YLVNEL------NSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNW 245 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEE-EEEecc------CCEEEEEEEcCCCceEEEeeeeccCccccCCCCc
Confidence 877775543322 11223456899999954 554222 24455555552 3665554433222111 0034
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEE
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSY 379 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ 379 (729)
...+..++||+++|.+++..+.-.+|.+|+.+|+...+.....+-.. ..+|.+.+ .++.|+...+++....
T Consensus 246 ~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~------PR~F~i~~---~g~~Liaa~q~sd~i~ 316 (346)
T COG2706 246 AAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQF------PRDFNINP---SGRFLIAANQKSDNIT 316 (346)
T ss_pred eeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcC------CccceeCC---CCCEEEEEccCCCcEE
Confidence 56678999999888888745556678899999987665522111111 23444543 6777787777888899
Q ss_pred EEEEECCCCceEeecc
Q 004816 380 LGILDDFGHSLSLLDI 395 (729)
Q Consensus 380 ly~~d~~~g~~~~lt~ 395 (729)
+|.+|.++|+++++..
T Consensus 317 vf~~d~~TG~L~~~~~ 332 (346)
T COG2706 317 VFERDKETGRLTLLGR 332 (346)
T ss_pred EEEEcCCCceEEeccc
Confidence 9999999999988865
No 142
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.14 E-value=1.4e-09 Score=130.67 Aligned_cols=216 Identities=14% Similarity=0.138 Sum_probs=128.2
Q ss_pred CCEEEEEcCCCCCCccccch---hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcc-cHHHHHHHHHHHHhCCC
Q 004816 492 PPLLVKSHGGPTSEARGILN---LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIV-DVNDCCSCATFLVGSGK 567 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~---~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~-~~~D~~~~~~~l~~~~~ 567 (729)
.|.||++||.+.....+... .++.+|+++||.|+++|+. .++ .. .....+... .+.++.++++.+.+..
T Consensus 67 ~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G-~~~--~~---~~~~~~~l~~~i~~l~~~l~~v~~~~- 139 (994)
T PRK07868 67 GPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFG-SPD--KV---EGGMERNLADHVVALSEAIDTVKDVT- 139 (994)
T ss_pred CCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCC-CCC--hh---HcCccCCHHHHHHHHHHHHHHHHHhh-
Confidence 46799999986555444332 1478899999999999973 222 11 000011111 1223344444443332
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-C-CCcceEEEEeccccChhH-----Hh----hh------------c--ch------
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-F-RDTFKAGASLYGVADLSM-----LR----AE------------T--HK------ 616 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~-~~~~~a~v~~~~~~d~~~-----~~----~~------------~--~~------ 616 (729)
.+++.++|||+||.+++.++. + +++++.+|+++...|+.. +. .. . ..
T Consensus 140 --~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 217 (994)
T PRK07868 140 --GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDTLAALPMGIPAGLAAAAADFMADHVFNRLDIPGWMARTG 217 (994)
T ss_pred --CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEecccccCCCCcccchhhhhhcccccchhhhhhcCCCCHHHHHHH
Confidence 357999999999999988876 5 558999987665543210 00 00 0 00
Q ss_pred h--------hhhhh---hhhcC-----C---------hh---------------hhhh-cCcc----------cccCCCC
Q 004816 617 F--------ESRYI---DNLVG-----S---------EK---------------DYYE-KSPI----------NFVDKFS 645 (729)
Q Consensus 617 ~--------~~~~~---~~~~~-----~---------~~---------------~~~~-~sp~----------~~~~~i~ 645 (729)
+ ...+. ..+.+ + .. .+.. +... ..+.+|+
T Consensus 218 ~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~~L~~i~ 297 (994)
T PRK07868 218 FQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMVTLADIT 297 (994)
T ss_pred HHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEcchhhCC
Confidence 0 00000 00000 0 00 0000 0111 1267889
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEE-EEECCCCcc--cCCcccHHHHHHHHHHHHHHHhCCCCCCCCC
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVAL-VEYEGEQHG--FRKAENIKFTLEQQMVFFARVVGHFDVADEI 720 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~-~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~ 720 (729)
+|+|+++|++|.++|++.+..+.+.+.. .++ ++++++||. +.......+.+..+.+|+.++-...+-++.+
T Consensus 298 ~P~L~i~G~~D~ivp~~~~~~l~~~i~~----a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~~~~~~~~~~~~ 371 (994)
T PRK07868 298 CPVLAFVGEVDDIGQPASVRGIRRAAPN----AEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKWLEGDGDKPENI 371 (994)
T ss_pred CCEEEEEeCCCCCCCHHHHHHHHHhCCC----CeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHHhccCCCCCccc
Confidence 9999999999999999999998777643 355 577899997 3445566788999999999987644444333
No 143
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.12 E-value=2.1e-09 Score=93.48 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=119.3
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCC--CCCchhHHHhhccCCCcccH-HHHHHHHHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGS--TGYGREFRERLLGRWGIVDV-NDCCSCATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs--~g~g~~~~~~~~~~~~~~~~-~D~~~~~~~l~~~~~ 567 (729)
..-+||+.||...++........+..|+.+|+.|+.+++.-. --.|+ .... .+.... .....++-.|.+.
T Consensus 13 ~~~tilLaHGAGasmdSt~m~~~a~~la~~G~~vaRfefpYma~Rrtg~---rkPp--~~~~t~~~~~~~~~aql~~~-- 85 (213)
T COG3571 13 APVTILLAHGAGASMDSTSMTAVAAALARRGWLVARFEFPYMAARRTGR---RKPP--PGSGTLNPEYIVAIAQLRAG-- 85 (213)
T ss_pred CCEEEEEecCCCCCCCCHHHHHHHHHHHhCceeEEEeecchhhhccccC---CCCc--CccccCCHHHHHHHHHHHhc--
Confidence 345788899987888888888888999999999999997411 11110 0011 111122 3334445555554
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEe-ccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCC
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASL-YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 644 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 644 (729)
.+..+++|-|+||||-++.+.+. +.+ +.+.+++ +|+. ..+.++..+ ..|+..+
T Consensus 86 l~~gpLi~GGkSmGGR~aSmvade~~A~-i~~L~clgYPfh-------------------ppGKPe~~R----t~HL~gl 141 (213)
T COG3571 86 LAEGPLIIGGKSMGGRVASMVADELQAP-IDGLVCLGYPFH-------------------PPGKPEQLR----TEHLTGL 141 (213)
T ss_pred ccCCceeeccccccchHHHHHHHhhcCC-cceEEEecCccC-------------------CCCCcccch----hhhccCC
Confidence 45678999999999999988876 554 7777765 3332 122233222 2467889
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC---------CcccHHHHHHHHHHHHHH
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR---------KAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~---------~~~~~~~~~~~~~~fl~~ 709 (729)
++|+||+||+.|..-..++...+ . ...+.+++++.++.|.+. ..+..+...+.+..|.++
T Consensus 142 ~tPtli~qGtrD~fGtr~~Va~y--~---ls~~iev~wl~~adHDLkp~k~vsgls~~~hL~~~A~~va~~~~~ 210 (213)
T COG3571 142 KTPTLITQGTRDEFGTRDEVAGY--A---LSDPIEVVWLEDADHDLKPRKLVSGLSTADHLKTLAEQVAGWARR 210 (213)
T ss_pred CCCeEEeecccccccCHHHHHhh--h---cCCceEEEEeccCccccccccccccccHHHHHHHHHHHHHHHHhh
Confidence 99999999999998777655222 1 224789999999999753 223344555666677654
No 144
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.11 E-value=3.6e-09 Score=99.61 Aligned_cols=179 Identities=16% Similarity=0.162 Sum_probs=109.0
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCC--cEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G--~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|+++||.-.+..........+++++.| ..+..+|++- ..+++...++.++++. .++.
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~~-------------------~p~~a~~~l~~~i~~~--~~~~ 60 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLPP-------------------FPEEAIAQLEQLIEEL--KPEN 60 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCCc-------------------CHHHHHHHHHHHHHhC--CCCC
Confidence 799999855555555556777788776 4566666641 1345556666666653 2345
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchh-hhhhhhhhcC-ChhhhhhcCccccc-CCCCCCE
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKF-ESRYIDNLVG-SEKDYYEKSPINFV-DKFSCPI 648 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~sp~~~~-~~i~~Pv 648 (729)
+.|+|.|+||+.|.+++. ++ +++ |+++|...........-.. ...+...... ....+.+...+... ..-..++
T Consensus 61 ~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l~~~iG~~~~~~~~e~~~~~~~~~~~l~~l~~~~~~~~~~~ 137 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELLQDYIGEQTNPYTGESYELTEEHIEELKALEVPYPTNPERY 137 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHHHHhhCccccCCCCccceechHhhhhcceEeccccCCCccE
Confidence 999999999999999987 54 344 8889988765443221000 0001000000 11222221111111 1223589
Q ss_pred EEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHH
Q 004816 649 ILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 649 L~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl 707 (729)
++++++.|.++++..+.+.++. +..++.+|++|.|.+ ..+.+..+++|+
T Consensus 138 lvll~~~DEvLd~~~a~~~~~~-------~~~~i~~ggdH~f~~---f~~~l~~i~~f~ 186 (187)
T PF05728_consen 138 LVLLQTGDEVLDYREAVAKYRG-------CAQIIEEGGDHSFQD---FEEYLPQIIAFL 186 (187)
T ss_pred EEEEecCCcccCHHHHHHHhcC-------ceEEEEeCCCCCCcc---HHHHHHHHHHhh
Confidence 9999999999999766555533 244566888999864 567888888886
No 145
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=6.4e-08 Score=95.92 Aligned_cols=218 Identities=11% Similarity=0.139 Sum_probs=136.5
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceE---EeeeCCCe----------eeeeeeCCCCCeEEEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQ---VLVSGSDF----------YAFPRMDPRGERMAWIE 259 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~---~lt~~~~~----------~~~~~~SPDG~~la~~~ 259 (729)
...++++||++|+ +..-+. ..|-+..+.. |.+. ++....+. .-...++|||++|+...
T Consensus 92 ~yvsvd~~g~~vf-~AnY~~-------g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~D 163 (346)
T COG2706 92 CYVSVDEDGRFVF-VANYHS-------GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPD 163 (346)
T ss_pred eEEEECCCCCEEE-EEEccC-------ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEee
Confidence 4567999999754 443332 3455555533 4332 22221111 22347899999998776
Q ss_pred ecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee-
Q 004816 260 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY- 338 (729)
Q Consensus 260 ~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~- 338 (729)
.. ..+|++++++ +|.+.......-. ++ .+...+.|.|+|+++|+...-++.-.+|.++...|+.++|-
T Consensus 164 LG-------~Dri~~y~~~-dg~L~~~~~~~v~-~G--~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~ 232 (346)
T COG2706 164 LG-------TDRIFLYDLD-DGKLTPADPAEVK-PG--AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQT 232 (346)
T ss_pred cC-------CceEEEEEcc-cCccccccccccC-CC--CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeee
Confidence 42 2458999998 7876443222111 12 56678999999996665554377778888888778776654
Q ss_pred --ccCccccCCcccccCcceeeeeecCCCCEEEEEEEE-CCeEEEEEEECCCCceEeeccC--Ccc-eEEe-eeeCCEEE
Q 004816 339 --SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-NGRSYLGILDDFGHSLSLLDIP--FTD-IDNI-TLGNDCLF 411 (729)
Q Consensus 339 --~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~-~g~~~ly~~d~~~g~~~~lt~~--~~~-v~~~-~~~~~~~~ 411 (729)
..+.++....|.. .++..+ +++.|| .++| ...-.+|.++.++|+++.+..- ... -+.+ ..+++.++
T Consensus 233 i~tlP~dF~g~~~~a---aIhis~---dGrFLY-asNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~L 305 (346)
T COG2706 233 IDTLPEDFTGTNWAA---AIHISP---DGRFLY-ASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFL 305 (346)
T ss_pred eccCccccCCCCcee---EEEECC---CCCEEE-EecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEE
Confidence 4455677777764 456653 555554 5554 4456788999999987755432 111 2333 45566666
Q ss_pred EEEeCCCCCceEEEEEcCCCcceeee
Q 004816 412 VEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 412 ~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
+.+........+|++|.++|+++.+.
T Consensus 306 iaa~q~sd~i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 306 IAANQKSDNITVFERDKETGRLTLLG 331 (346)
T ss_pred EEEccCCCcEEEEEEcCCCceEEecc
Confidence 66666666678999999999876543
No 146
>PRK13616 lipoprotein LpqB; Provisional
Probab=99.11 E-value=8.8e-09 Score=114.49 Aligned_cols=171 Identities=9% Similarity=-0.002 Sum_probs=111.0
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCC----CCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPN----MPW 267 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~----~~~ 267 (729)
...++.+||||++++|+....... .....+||+++.. ++.++++.+.. ...|.|||||++|+|+.....- ...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~-~d~~s~Lwv~~~g-g~~~~lt~g~~-~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGA-PDPASSLWVGPLG-GVAVQVLEGHS-LTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCC-CCcceEEEEEeCC-CcceeeecCCC-CCCceECCCCCceEEEecCcceEEEeccC
Confidence 457889999999999998533211 1245789999974 55688887764 7889999999999998632110 001
Q ss_pred CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEE---EEcCCCeEEEe------
Q 004816 268 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK---WIESNNEVLAI------ 337 (729)
Q Consensus 268 ~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~---~d~~~g~~~~l------ 337 (729)
...+||+++++ .++... ..+ ..+..+.|||||+ ++|+.. + +|++ +...+|+ ..|
T Consensus 428 ~~gql~~~~vd-~ge~~~-----~~~----g~Issl~wSpDG~RiA~i~~---g--~v~Va~Vvr~~~G~-~~l~~~~~l 491 (591)
T PRK13616 428 ATGQLARTPVD-ASAVAS-----RVP----GPISELQLSRDGVRAAMIIG---G--KVYLAVVEQTEDGQ-YALTNPREV 491 (591)
T ss_pred CCceEEEEecc-Cchhhh-----ccC----CCcCeEEECCCCCEEEEEEC---C--EEEEEEEEeCCCCc-eeecccEEe
Confidence 24578888887 555421 222 4578899999999 888873 3 4554 4445665 333
Q ss_pred eccCcc-ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 338 YSLDAE-FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 338 ~~~~~~-~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
.....+ .....|. ++..|+... ..+...+|.+++++...+.+..
T Consensus 492 ~~~l~~~~~~l~W~-------------~~~~L~V~~-~~~~~~v~~v~vDG~~~~~~~~ 536 (591)
T PRK13616 492 GPGLGDTAVSLDWR-------------TGDSLVVGR-SDPEHPVWYVNLDGSNSDALPS 536 (591)
T ss_pred ecccCCccccceEe-------------cCCEEEEEe-cCCCCceEEEecCCccccccCC
Confidence 222212 2344565 455566554 4566779999999877665444
No 147
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.11 E-value=4.7e-10 Score=103.92 Aligned_cols=229 Identities=16% Similarity=0.177 Sum_probs=134.8
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR 540 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~ 540 (729)
..++.. ||..+.+..|...+ +.+-.+++-|++ +.....|..+++..+.+||.|+.+||||.+++...-.
T Consensus 8 ~~l~~~-DG~~l~~~~~pA~~---------~~~g~~~va~a~-Gv~~~fYRrfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~ 76 (281)
T COG4757 8 AHLPAP-DGYSLPGQRFPADG---------KASGRLVVAGAT-GVGQYFYRRFAAAAAKAGFEVLTFDYRGIGQSRPASL 76 (281)
T ss_pred cccccC-CCccCccccccCCC---------CCCCcEEecccC-CcchhHhHHHHHHhhccCceEEEEecccccCCCcccc
Confidence 557777 99999988885433 122223333442 2333456778888899999999999999877543322
Q ss_pred Hh---hccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEecccc--ChhHHhhh--
Q 004816 541 ER---LLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVA--DLSMLRAE-- 613 (729)
Q Consensus 541 ~~---~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~--d~~~~~~~-- 613 (729)
.. ...+|. ..|+.++++++.+.. ..-....+|||+||.+.-.+..++..-.++|...+.. -+......
T Consensus 77 ~~~~~~~~DwA---~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~~~~~k~~a~~vfG~gagwsg~m~~~~~l~ 151 (281)
T COG4757 77 SGSQWRYLDWA---RLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLLGQHPKYAAFAVFGSGAGWSGWMGLRERLG 151 (281)
T ss_pred ccCccchhhhh---hcchHHHHHHHHhhC--CCCceEEeeccccceeecccccCcccceeeEeccccccccchhhhhccc
Confidence 21 122333 688999999998852 2456889999999997666655773222233222211 10000000
Q ss_pred ----------cchhhhhhhh-hhcCC--------hhh---------hhhcCcc-----cccCCCCCCEEEEEeCCCCCCC
Q 004816 614 ----------THKFESRYID-NLVGS--------EKD---------YYEKSPI-----NFVDKFSCPIILFQGLEDKVVP 660 (729)
Q Consensus 614 ----------~~~~~~~~~~-~~~~~--------~~~---------~~~~sp~-----~~~~~i~~PvL~i~G~~D~~vp 660 (729)
.-.+...|+. .+.|. .+. |.-.+|. .-.+.+++|++.+...+|+-+|
T Consensus 152 ~~~l~~lv~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~RwcR~p~y~fddp~~~~~~q~yaaVrtPi~~~~~~DD~w~P 231 (281)
T COG4757 152 AVLLWNLVGPPLTFWKGYMPKDLLGLGSDLPGTVMRDWARWCRHPRYYFDDPAMRNYRQVYAAVRTPITFSRALDDPWAP 231 (281)
T ss_pred ceeeccccccchhhccccCcHhhcCCCccCcchHHHHHHHHhcCccccccChhHhHHHHHHHHhcCceeeeccCCCCcCC
Confidence 0000111111 11110 011 1111221 1145678999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCEEEEEECCC----CcccCCcccHHHHHHHHHHHH
Q 004816 661 PDQARKIYKALKENGLPVALVEYEGE----QHGFRKAENIKFTLEQQMVFF 707 (729)
Q Consensus 661 ~~~~~~~~~~l~~~g~~~~~~~~~~~----gH~~~~~~~~~~~~~~~~~fl 707 (729)
+...+.+.+..+.+ +.+.+.++.. ||.-.-.+..+...+++++||
T Consensus 232 ~As~d~f~~~y~nA--pl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 232 PASRDAFASFYRNA--PLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred HHHHHHHHHhhhcC--cccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 99999999998876 6677777755 786222222356667777776
No 148
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=99.08 E-value=2.7e-10 Score=114.85 Aligned_cols=218 Identities=18% Similarity=0.122 Sum_probs=132.1
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCch
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGR 537 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~ 537 (729)
...+++.....+.++..+++.|...... ....+.|+|++.||. +.....|.+.++.+++.||.|..+++.|+.--+.
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~-~~~~~~PlvvlshG~--Gs~~~~f~~~A~~lAs~Gf~Va~~~hpgs~~~~~ 114 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGT-VALYLLPLVVLSHGS--GSYVTGFAWLAEHLASYGFVVAAPDHPGSNAGGA 114 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccc-cccCcCCeEEecCCC--CCCccchhhhHHHHhhCceEEEeccCCCcccccC
Confidence 3455555543577888899988763210 011478999999997 3446778889999999999999999998654332
Q ss_pred hHHHhhccC----CCcccHHHHHHHHHHHHhC---C----CCCCCcEEEEEcChHHHHHHHHHh-CCCc---ceEEE---
Q 004816 538 EFRERLLGR----WGIVDVNDCCSCATFLVGS---G----KADEKRLCITGGSAGGYTTLAALA-FRDT---FKAGA--- 599 (729)
Q Consensus 538 ~~~~~~~~~----~~~~~~~D~~~~~~~l~~~---~----~~d~~ri~i~G~S~GG~~a~~~~~-~~~~---~~a~v--- 599 (729)
.-....... -......|+...+++|.+. + .+|..+|+++|||+||++++.++. +.+. .+.+.
T Consensus 115 ~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~~~~~~~~C~~~~ 194 (365)
T COG4188 115 PAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELDAEALLQHCESAS 194 (365)
T ss_pred ChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccccHHHHHHHhhhhh
Confidence 222222111 0112368899999999887 4 578999999999999999999886 4321 11111
Q ss_pred --Ee-ccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCc----------c-------cccCCCCCCEEEEEeCCCCCC
Q 004816 600 --SL-YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP----------I-------NFVDKFSCPIILFQGLEDKVV 659 (729)
Q Consensus 600 --~~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp----------~-------~~~~~i~~PvL~i~G~~D~~v 659 (729)
+. -+..+............ ....|...+| . .-+.+++.|++++.|..|...
T Consensus 195 ~~~~~~~~~~~~~l~q~~av~~---------~~~~~~~rDpriravvA~~p~~~~~Fg~tgl~~v~~P~~~~a~s~D~~a 265 (365)
T COG4188 195 RICLDPPGLNGRLLNQCAAVWL---------PRQAYDLRDPRIRAVVAINPALGMIFGTTGLVKVTDPVLLAAGSADGFA 265 (365)
T ss_pred hcccCCCCcChhhhcccccccc---------chhhhccccccceeeeeccCCcccccccccceeeecceeeecccccccC
Confidence 01 11111111111100000 0111111111 1 225678899999999999977
Q ss_pred ChH-HHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 660 PPD-QARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 660 p~~-~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
|+. +....+..|.. ....+...|++.|.
T Consensus 266 P~~~~~~~~f~~l~g--~~k~~~~vp~a~h~ 294 (365)
T COG4188 266 PPVTEQIRPFGYLPG--ALKYLRLVPGATHF 294 (365)
T ss_pred CcccccccccccCCc--chhheeecCCCccc
Confidence 663 33344444433 22367888999995
No 149
>KOG3101 consensus Esterase D [General function prediction only]
Probab=99.06 E-value=9.2e-10 Score=100.15 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=126.5
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHH-hhCCcEEEEec--CCCCCCCch--hH------
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYW-TSRGWAFVDVN--YGGSTGYGR--EF------ 539 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~l-a~~G~~v~~~d--~rGs~g~g~--~~------ 539 (729)
.+..-+|.|+.. +.+++.|++.++-|-........-..-.|.. ..+|++|+.|| .||----|. +|
T Consensus 27 ~Mtf~vylPp~a----~~~k~~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 27 SMTFGVYLPPDA----PRGKRCPVLFYLSGLTCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred ceEEEEecCCCc----ccCCcCceEEEecCCcccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 455566777652 2467799999998863222111112233444 45799999999 555211111 11
Q ss_pred ---HHhhccCCCcccHHHHHHHHHHHHh---------CCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC
Q 004816 540 ---RERLLGRWGIVDVNDCCSCATFLVG---------SGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 606 (729)
Q Consensus 540 ---~~~~~~~~~~~~~~D~~~~~~~l~~---------~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d 606 (729)
.++....|.. -..+.+|+.+ .-.+|+.|++|.||||||+-|+.... .+.+++.+.+.+|+.+
T Consensus 103 GFYvnAt~epw~~-----~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~N 177 (283)
T KOG3101|consen 103 GFYVNATQEPWAK-----HYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICN 177 (283)
T ss_pred eeEEecccchHhh-----hhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccC
Confidence 1111111211 1222222222 23578999999999999999987776 8999999999999988
Q ss_pred hhHHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCCC---CCEEEEEeCCCCCCChHH--HHHHHHHHHhCC-CCEE
Q 004816 607 LSMLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFS---CPIILFQGLEDKVVPPDQ--ARKIYKALKENG-LPVA 679 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~---~PvL~i~G~~D~~vp~~~--~~~~~~~l~~~g-~~~~ 679 (729)
..... +....+...+| +...|.++++..-+++++ .-+||-+|..|...+ +| .+.+.++.+... .++.
T Consensus 178 P~~cp-----WGqKAf~gYLG~~ka~W~~yDat~lik~y~~~~~~ilIdqG~~D~Fl~-~qLlPe~l~~a~~~~~~~~v~ 251 (283)
T KOG3101|consen 178 PINCP-----WGQKAFTGYLGDNKAQWEAYDATHLIKNYRGVGDDILIDQGAADNFLA-EQLLPENLLEACKATWQAPVV 251 (283)
T ss_pred cccCc-----chHHHhhcccCCChHHHhhcchHHHHHhcCCCCccEEEecCccchhhh-hhcChHHHHHHhhccccccEE
Confidence 75432 12222222333 567788888866666554 458999999998765 22 344555555333 5788
Q ss_pred EEEECCCCcccC
Q 004816 680 LVEYEGEQHGFR 691 (729)
Q Consensus 680 ~~~~~~~gH~~~ 691 (729)
+..-+|-+|...
T Consensus 252 ~r~~~gyDHSYy 263 (283)
T KOG3101|consen 252 FRLQEGYDHSYY 263 (283)
T ss_pred EEeecCCCccee
Confidence 888899999753
No 150
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.05 E-value=1.3e-07 Score=100.03 Aligned_cols=273 Identities=10% Similarity=0.081 Sum_probs=149.0
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCC--ceEEEE--CCEEEEEEC
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGG--GAFRIF--GDTVIFSNY 162 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~--~~~i~~~~~ 162 (729)
...+..+.++| ++.+|.+.....+.+....++.+.++ |+...+- .+...|. +.++.+ ++.++....
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~--------~~~~~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLN--------SVPSGGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEE--------EEEESSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEee--------eeccCCCCcEEEEEecCCCEEEEEEc
Confidence 35677889999 77777776433246666666665541 2222111 1111122 223443 446666666
Q ss_pred CCCcEEEEeCCCCCCCCeecCC-------C---CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 163 KDQRLYKHSIDSKDSSPLPITP-------D---YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~-------~---~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
..+.+.+++++.. +....... . ............++|||+++ |+.+-. ...|++++++...
T Consensus 107 ~~g~v~v~~l~~~-g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v-~v~dlG-------~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 107 GGGSVSVFPLDDD-GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFV-YVPDLG-------ADRVYVYDIDDDT 177 (345)
T ss_dssp TTTEEEEEEECTT-SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEE-EEEETT-------TTEEEEEEE-TTS
T ss_pred cCCeEEEEEccCC-cccceeeeecccCCCCCcccccccccceeEEECCCCCEE-EEEecC-------CCEEEEEEEeCCC
Confidence 7788888888652 33222210 0 00111223457899999986 454433 2457777766543
Q ss_pred --eEEe---e-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec-CCCCeeeeEEecCCCCCcc--ccccCc
Q 004816 233 --IQVL---V-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS-ENGDVYKRVCVAGFDPTIV--ESPTEP 303 (729)
Q Consensus 233 --~~~l---t-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~-~~g~~~~~~~~~~~~~~~~--~~~~~~ 303 (729)
.... . +....-....|+|||++++.+. .. ...|.++++. .+|.+...........++. .....+
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~-e~------s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVN-EL------SNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEE-TT------TTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEec-CC------CCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 4331 1 1112234568999999876654 32 3457777776 3455443333322211110 134567
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
..+|||+.+|++++..+.-.+|.+|.++|+.+.+......-.. ...+.+.+ +++.|++....++...+|.+
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~------Pr~~~~s~---~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF------PRHFAFSP---DGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS------EEEEEE-T---TSSEEEEEETTTTEEEEEEE
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC------ccEEEEeC---CCCEEEEEecCCCeEEEEEE
Confidence 8999999777777734445566666677877765422111001 23455554 77778877777888999999
Q ss_pred ECCCCceEeec
Q 004816 384 DDFGHSLSLLD 394 (729)
Q Consensus 384 d~~~g~~~~lt 394 (729)
|.++|.++.+.
T Consensus 322 d~~tG~l~~~~ 332 (345)
T PF10282_consen 322 DPDTGKLTPVG 332 (345)
T ss_dssp ETTTTEEEEEE
T ss_pred eCCCCcEEEec
Confidence 99999987664
No 151
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.04 E-value=5.8e-09 Score=97.22 Aligned_cols=152 Identities=14% Similarity=0.105 Sum_probs=94.9
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEE
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLC 574 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~ 574 (729)
|+++||..++.....+.++.+.+... +.|-.+|.. .-+.++....++..+.. + .+.+.
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~-~~V~~~~~~------------------~P~~~~W~~~l~~~i~~--~-~~~~i 58 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS-VRVEQPDWD------------------NPDLDEWVQALDQAIDA--I-DEPTI 58 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS-EEEEEC--T------------------S--HHHHHHHHHHCCHC----TTTEE
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC-eEEeccccC------------------CCCHHHHHHHHHHHHhh--c-CCCeE
Confidence 68899986666666667777777777 777777651 01133334333333332 3 35699
Q ss_pred EEEcChHHHHHHHHH-h-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEE
Q 004816 575 ITGGSAGGYTTLAAL-A-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQ 652 (729)
Q Consensus 575 i~G~S~GG~~a~~~~-~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~ 652 (729)
++|||+|+.++++++ . ...+++++++.+|+........ ........+. ....+..|.+++.
T Consensus 59 lVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~~~~~~~----------------~~~~~~f~~~-p~~~l~~~~~via 121 (171)
T PF06821_consen 59 LVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDPDDPEPF----------------PPELDGFTPL-PRDPLPFPSIVIA 121 (171)
T ss_dssp EEEETHHHHHHHHHHHHTCCSSEEEEEEES--SCGCHHCC----------------TCGGCCCTTS-HCCHHHCCEEEEE
T ss_pred EEEeCHHHHHHHHHHhhcccccccEEEEEcCCCcccccch----------------hhhccccccC-cccccCCCeEEEE
Confidence 999999999999999 5 7889999999999743201000 0000111111 0122345669999
Q ss_pred eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 653 GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 653 G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
+++|+.||++.+.++++.|.. +++.++++||..
T Consensus 122 S~nDp~vp~~~a~~~A~~l~a-----~~~~~~~~GHf~ 154 (171)
T PF06821_consen 122 SDNDPYVPFERAQRLAQRLGA-----ELIILGGGGHFN 154 (171)
T ss_dssp ETTBSSS-HHHHHHHHHHHT------EEEEETS-TTSS
T ss_pred cCCCCccCHHHHHHHHHHcCC-----CeEECCCCCCcc
Confidence 999999999999999999954 899999999953
No 152
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.04 E-value=3.4e-08 Score=92.64 Aligned_cols=207 Identities=15% Similarity=0.203 Sum_probs=120.5
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCC----Cchh
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTG----YGRE 538 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g----~g~~ 538 (729)
+... +|..+..|--.|++.. .++.|.||+..|. +.....|..++.+|+.+||.|+.+|.--.-| .=.+
T Consensus 7 i~~~-~~~~I~vwet~P~~~~-----~~~~~tiliA~Gf--~rrmdh~agLA~YL~~NGFhViRyDsl~HvGlSsG~I~e 78 (294)
T PF02273_consen 7 IRLE-DGRQIRVWETRPKNNE-----PKRNNTILIAPGF--ARRMDHFAGLAEYLSANGFHVIRYDSLNHVGLSSGDINE 78 (294)
T ss_dssp EEET-TTEEEEEEEE---TTS--------S-EEEEE-TT---GGGGGGHHHHHHHHTTT--EEEE---B-----------
T ss_pred eEcC-CCCEEEEeccCCCCCC-----cccCCeEEEecch--hHHHHHHHHHHHHHhhCCeEEEeccccccccCCCCChhh
Confidence 3444 8999999999998733 5667999999887 5556778889999999999999999643222 1111
Q ss_pred HHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEeccccChhHHhhhcchhh
Q 004816 539 FRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYGVADLSMLRAETHKFE 618 (729)
Q Consensus 539 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~~~d~~~~~~~~~~~~ 618 (729)
|... ...+|+..+++||...+ ..+++++..|.-|-+|+..+... .....|...|+.++..-......
T Consensus 79 ftms-------~g~~sL~~V~dwl~~~g---~~~~GLIAaSLSaRIAy~Va~~i-~lsfLitaVGVVnlr~TLe~al~-- 145 (294)
T PF02273_consen 79 FTMS-------IGKASLLTVIDWLATRG---IRRIGLIAASLSARIAYEVAADI-NLSFLITAVGVVNLRDTLEKALG-- 145 (294)
T ss_dssp --HH-------HHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTTTS---SEEEEES--S-HHHHHHHHHS--
T ss_pred cchH-------HhHHHHHHHHHHHHhcC---CCcchhhhhhhhHHHHHHHhhcc-CcceEEEEeeeeeHHHHHHHHhc--
Confidence 1111 12688999999999775 46799999999999999999866 47788888899998765432211
Q ss_pred hhhhhhhcC-------------Chhhhh----------hcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCC
Q 004816 619 SRYIDNLVG-------------SEKDYY----------EKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENG 675 (729)
Q Consensus 619 ~~~~~~~~~-------------~~~~~~----------~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g 675 (729)
..|+....+ +.+.|. -.|....++.+.+|++.+++.+|.-|...+..++...+..
T Consensus 146 ~Dyl~~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~~l~ST~~~~k~l~iP~iaF~A~~D~WV~q~eV~~~~~~~~s-- 223 (294)
T PF02273_consen 146 YDYLQLPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWDDLDSTINDMKRLSIPFIAFTANDDDWVKQSEVEELLDNINS-- 223 (294)
T ss_dssp S-GGGS-GGG--SEEEETTEEEEHHHHHHHHHHTT-SSHHHHHHHHTT--S-EEEEEETT-TTS-HHHHHHHHTT-TT--
T ss_pred cchhhcchhhCCCcccccccccchHHHHHHHHHcCCccchhHHHHHhhCCCCEEEEEeCCCccccHHHHHHHHHhcCC--
Confidence 122221110 011111 1233456888899999999999999988777777665544
Q ss_pred CCEEEEEECCCCcccCC
Q 004816 676 LPVALVEYEGEQHGFRK 692 (729)
Q Consensus 676 ~~~~~~~~~~~gH~~~~ 692 (729)
..++++.++|..|.+..
T Consensus 224 ~~~klysl~Gs~HdL~e 240 (294)
T PF02273_consen 224 NKCKLYSLPGSSHDLGE 240 (294)
T ss_dssp --EEEEEETT-SS-TTS
T ss_pred CceeEEEecCccchhhh
Confidence 36799999999998754
No 153
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.01 E-value=8.8e-09 Score=107.65 Aligned_cols=246 Identities=19% Similarity=0.185 Sum_probs=163.3
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch----hhhHHHhhCCcEEEEec
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN----LSIQYWTSRGWAFVDVN 528 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~----~~~~~la~~G~~v~~~d 528 (729)
...-+.|...+.+. ||.-+. +.-.|.. .+++|+|++.||--.+...+... .++-.|+++||.|..-|
T Consensus 43 ~~gy~~E~h~V~T~-DgYiL~-lhRIp~~-------~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN 113 (403)
T KOG2624|consen 43 KYGYPVEEHEVTTE-DGYILT-LHRIPRG-------KKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGN 113 (403)
T ss_pred HcCCceEEEEEEcc-CCeEEE-EeeecCC-------CCCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeec
Confidence 33446788999998 998555 4444544 26789999999965554444322 35667899999999999
Q ss_pred CCCCCCCchhHHHhhc--------cCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC---cce
Q 004816 529 YGGSTGYGREFRERLL--------GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD---TFK 596 (729)
Q Consensus 529 ~rGs~g~g~~~~~~~~--------~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~---~~~ 596 (729)
.|| ..|++....... -.|-+....|+.+.+||+++.- ..+++..+|||.|+...+.++. +|+ +++
T Consensus 114 ~RG-n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T--~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~ 190 (403)
T KOG2624|consen 114 NRG-NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKT--GQEKLHYVGHSQGTTTFFVMLSERPEYNKKIK 190 (403)
T ss_pred CcC-cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhc--cccceEEEEEEccchhheehhcccchhhhhhh
Confidence 999 556654332221 1133334789999999999973 5689999999999999888876 544 789
Q ss_pred EEEEeccccChh---HH----------------------------------hhhcch---hh----hhhhhhhcC-----
Q 004816 597 AGASLYGVADLS---ML----------------------------------RAETHK---FE----SRYIDNLVG----- 627 (729)
Q Consensus 597 a~v~~~~~~d~~---~~----------------------------------~~~~~~---~~----~~~~~~~~~----- 627 (729)
..++++|+.-+. .+ ...... .. ..++....|
T Consensus 191 ~~~aLAP~~~~k~~~~~~~~~~~~~~~~~~~~~~~fg~~~f~p~~~~~~~~~~~~C~~~~~~~~lC~~~~~~~~G~~~~~ 270 (403)
T KOG2624|consen 191 SFIALAPAAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCSNFLFLLVGWNSNN 270 (403)
T ss_pred eeeeecchhhhcccccHHHHhhhhhhhhhhHHHHhcCCccccchhhHHHHHHHHHhcchhHHHHHHHHHHHHHcCcchHh
Confidence 999998876332 00 000000 00 000000000
Q ss_pred -------------------------------------------Chhhhhh-cCcccccCCCCCCEEEEEeCCCCCCChHH
Q 004816 628 -------------------------------------------SEKDYYE-KSPINFVDKFSCPIILFQGLEDKVVPPDQ 663 (729)
Q Consensus 628 -------------------------------------------~~~~~~~-~sp~~~~~~i~~PvL~i~G~~D~~vp~~~ 663 (729)
+...|.. ..|.+.+.++++|+.++.|.+|.++.+++
T Consensus 271 ~n~~~~~~~~~h~pagtSvk~~~H~~Q~~~s~~f~~yD~G~~~N~~~Y~q~~pP~Y~l~~i~~P~~l~~g~~D~l~~~~D 350 (403)
T KOG2624|consen 271 WNTTLLPVYLAHLPAGTSVKNIVHWAQIVRSGKFRKYDYGSKRNLKHYGQSTPPEYDLTNIKVPTALYYGDNDWLADPED 350 (403)
T ss_pred hhhcccchhhccCCCCccHHHHHHHHHHhcCCCccccCCCccccHhhcCCCCCCCCCccccccCEEEEecCCcccCCHHH
Confidence 1112221 24566688899999999999999999999
Q ss_pred HHHHHHHHHhCCCCEEEEEECCCCcc-c-CCcccHHHHHHHHHHHHHHHh
Q 004816 664 ARKIYKALKENGLPVALVEYEGEQHG-F-RKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 664 ~~~~~~~l~~~g~~~~~~~~~~~gH~-~-~~~~~~~~~~~~~~~fl~~~l 711 (729)
...+...+..... ...+.+++-.|. | .......+.+..+++.+++..
T Consensus 351 V~~~~~~~~~~~~-~~~~~~~~ynHlDFi~g~da~~~vy~~vi~~~~~~~ 399 (403)
T KOG2624|consen 351 VLILLLVLPNSVI-KYIVPIPEYNHLDFIWGLDAKEEVYDPVIERLRLFE 399 (403)
T ss_pred HHHHHHhcccccc-cccccCCCccceeeeeccCcHHHHHHHHHHHHHhhh
Confidence 9988888876544 333347777885 2 334556788888998888765
No 154
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.98 E-value=3.8e-07 Score=96.42 Aligned_cols=259 Identities=14% Similarity=0.100 Sum_probs=139.0
Q ss_pred CCEEEEEECC---CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 154 GDTVIFSNYK---DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 154 ~~~i~~~~~~---~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
++.|+..... .+.|..+.++..++..+.+....- .+......+++|||++|+...-.. ..+.+++++.
T Consensus 48 ~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~g~~p~~i~~~~~g~~l~vany~~--------g~v~v~~l~~ 118 (345)
T PF10282_consen 48 GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-GGSSPCHIAVDPDGRFLYVANYGG--------GSVSVFPLDD 118 (345)
T ss_dssp SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-SSSCEEEEEECTTSSEEEEEETTT--------TEEEEEEECT
T ss_pred CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-CCCCcEEEEEecCCCEEEEEEccC--------CeEEEEEccC
Confidence 4455555553 456766665531033433332110 012234567999999865543222 4576777765
Q ss_pred -CceEEe---ee----C-------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC-CCeeeeEEecCCCC
Q 004816 231 -QNIQVL---VS----G-------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN-GDVYKRVCVAGFDP 294 (729)
Q Consensus 231 -g~~~~l---t~----~-------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~-g~~~~~~~~~~~~~ 294 (729)
|.+... .. + ....-...++|||++|+.... ....|++++++.. +++.....+.-..
T Consensus 119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-------G~D~v~~~~~~~~~~~l~~~~~~~~~~- 190 (345)
T PF10282_consen 119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-------GADRVYVYDIDDDTGKLTPVDSIKVPP- 190 (345)
T ss_dssp TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-------TTTEEEEEEE-TTS-TEEEEEEEECST-
T ss_pred CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-------CCCEEEEEEEeCCCceEEEeecccccc-
Confidence 544332 21 1 112234689999999876552 2345888888722 2354322222111
Q ss_pred CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec---cCccccCCcccccCcceeeeeecCCCCEEEEE
Q 004816 295 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~ 371 (729)
+ ....++.|+|||+++|+.+...+.-.++.++..+++.+.+.. ......... ....+.+.+ |++.||++
T Consensus 191 G--~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~i~isp---dg~~lyvs 262 (345)
T PF10282_consen 191 G--SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGEN---APAEIAISP---DGRFLYVS 262 (345)
T ss_dssp T--SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSS---SEEEEEE-T---TSSEEEEE
T ss_pred C--CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccC---CceeEEEec---CCCEEEEE
Confidence 1 456778999999955555553555556666655776554431 111111111 123455654 67767666
Q ss_pred EEECCeEEEEEEECCCCceEeeccC---CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 372 YRQNGRSYLGILDDFGHSLSLLDIP---FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 372 s~~~g~~~ly~~d~~~g~~~~lt~~---~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
....+.-.+|.++.++|.++.+..- ...-..+ ..+++++++.+......-.+|.+|.++|.++.+.
T Consensus 263 nr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 263 NRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred eccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence 5555666778777778887766431 1223444 4455566666666666667888888899876554
No 155
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=98.98 E-value=1.8e-09 Score=120.52 Aligned_cols=130 Identities=25% Similarity=0.299 Sum_probs=92.6
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC-C-cEEEEecCC-CCCCCchhHHHhhccC
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-G-WAFVDVNYG-GSTGYGREFRERLLGR 546 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G-~~v~~~d~r-Gs~g~g~~~~~~~~~~ 546 (729)
..+...+|.|.... +.++.|+||++|||+......... ....++.. + ++|+.+||| |..|+.........++
T Consensus 77 dcl~l~i~~p~~~~----~~~~~pv~v~ihGG~~~~g~~~~~-~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n 151 (493)
T cd00312 77 DCLYLNVYTPKNTK----PGNSLPVMVWIHGGGFMFGSGSLY-PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGN 151 (493)
T ss_pred cCCeEEEEeCCCCC----CCCCCCEEEEEcCCccccCCCCCC-ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcc
Confidence 45777788886521 246789999999997654433322 23444443 3 999999999 7666654332222333
Q ss_pred CCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhC---CCcceEEEEeccccCh
Q 004816 547 WGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAF---RDTFKAGASLYGVADL 607 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~---~~~~~a~v~~~~~~d~ 607 (729)
+| ..|+..+++|+.++ ...|+++|.|+|+|+||+++..++.. ..+|+++|+.+|....
T Consensus 152 ~g---~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 152 YG---LKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred hh---HHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 43 78999999999875 35799999999999999999888874 4579999998886543
No 156
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.95 E-value=8.3e-07 Score=93.59 Aligned_cols=266 Identities=11% Similarity=0.038 Sum_probs=137.4
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+..+.++| ++.+|.... ..+....|..+.+ |....+-..... .......+.++++.++.....++.|.
T Consensus 36 ~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~--g~l~~~~~~~~~-----~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVR---PEFRVLSYRIADD--GALTFAAESPLP-----GSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred CCccEEECCCCCEEEEEEC---CCCcEEEEEECCC--CceEEeeeecCC-----CCceEEEECCCCCEEEEEEcCCCeEE
Confidence 456788999 666766543 2355555666522 222111100000 01112233344555655555577888
Q ss_pred EEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceE-------EeeeC
Q 004816 169 KHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQ-------VLVSG 239 (729)
Q Consensus 169 ~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~-------~lt~~ 239 (729)
+++++.. +.. +.+..... ........++|||++++.+.... ..|+++|+++ +... .+..+
T Consensus 106 v~~~~~~-g~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~~--------~~v~v~d~~~~g~l~~~~~~~~~~~~g 174 (330)
T PRK11028 106 VSPLDKD-GIPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLKE--------DRIRLFTLSDDGHLVAQEPAEVTTVEG 174 (330)
T ss_pred EEEECCC-CCCCCceeeccC--CCcccEeEeCCCCCEEEEeeCCC--------CEEEEEEECCCCcccccCCCceecCCC
Confidence 8888631 222 11111100 11124457999999865544322 5688888875 3322 11112
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCC--ccccccCceeCCCCcEEEEEe
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPT--IVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~--~~~~~~~~~wspDG~l~~~~~ 316 (729)
. ......|+|||++|+.+.. ....|.+++++. +++......+...... .......+.++|||+.+|+++
T Consensus 175 ~-~p~~~~~~pdg~~lyv~~~-------~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~ 246 (330)
T PRK11028 175 A-GPRHMVFHPNQQYAYCVNE-------LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACD 246 (330)
T ss_pred C-CCceEEECCCCCEEEEEec-------CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEec
Confidence 2 2345689999998876542 134588888862 2443222222111100 001223467899999666666
Q ss_pred cCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 317 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 317 ~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
+..+...++.++.+++..+.+-..... .....+.+.+ +++.+|.+...++.-.+|.++.+++.++.+.
T Consensus 247 ~~~~~I~v~~i~~~~~~~~~~~~~~~~-------~~p~~~~~~~---dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 247 RTASLISVFSVSEDGSVLSFEGHQPTE-------TQPRGFNIDH---SGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred CCCCeEEEEEEeCCCCeEEEeEEEecc-------ccCCceEECC---CCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 534445555555454443332211100 0122345554 7777877776678888888887777766553
No 157
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.94 E-value=7.1e-09 Score=98.31 Aligned_cols=178 Identities=18% Similarity=0.175 Sum_probs=117.1
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCccc
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD 551 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~ 551 (729)
....++.|.. .+.+|+|+++||. ......|....+.++++||.|++++.-...+ .-+..+
T Consensus 33 kpLlI~tP~~-------~G~yPVilF~HG~--~l~ns~Ys~lL~HIASHGfIVVAPQl~~~~~-----------p~~~~E 92 (307)
T PF07224_consen 33 KPLLIVTPSE-------AGTYPVILFLHGF--NLYNSFYSQLLAHIASHGFIVVAPQLYTLFP-----------PDGQDE 92 (307)
T ss_pred CCeEEecCCc-------CCCccEEEEeech--hhhhHHHHHHHHHHhhcCeEEEechhhcccC-----------CCchHH
Confidence 3445566755 5789999999997 4556678889999999999999999753211 113345
Q ss_pred HHHHHHHHHHHHhC--------CCCCCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEEeccccChhHHhhhcchhhhh
Q 004816 552 VNDCCSCATFLVGS--------GKADEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYGVADLSMLRAETHKFESR 620 (729)
Q Consensus 552 ~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~~a~~~~~-~--~~~~~a~v~~~~~~d~~~~~~~~~~~~~~ 620 (729)
+++..++++||.+. -..+..+++++|||.||.+|..++. + .-.|.+.|.+.|+.-........
T Consensus 93 i~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsaLIGiDPV~G~~k~~~t~------ 166 (307)
T PF07224_consen 93 IKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSALIGIDPVAGTSKGKQTP------ 166 (307)
T ss_pred HHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhheecccccCCCCCCCCCC------
Confidence 78889999999774 1256789999999999999988886 4 23588888888876543211111
Q ss_pred hhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCC-------CCCChH--HHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 621 YIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLED-------KVVPPD--QARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 621 ~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D-------~~vp~~--~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
+..+ .+.|.. =.+..|+++|...-- +-|.+. +-++|++..+. ++...+..+-||.
T Consensus 167 --------P~iL-ty~p~S--F~l~iPv~VIGtGLg~~~~~~~~~CaP~gvnH~eFf~eCk~---p~~hfV~~dYGHm 230 (307)
T PF07224_consen 167 --------PPIL-TYVPQS--FDLDIPVLVIGTGLGPKRNPLFPPCAPDGVNHEEFFNECKP---PCAHFVAKDYGHM 230 (307)
T ss_pred --------CCee-ecCCcc--cccCCceEEEecCcCccccCCCCCCCCCCcCHHHHHHhhcc---cceeeeecccccc
Confidence 1110 011111 134589999854332 112222 45677777664 6777777888895
No 158
>COG0627 Predicted esterase [General function prediction only]
Probab=98.94 E-value=7.3e-09 Score=105.42 Aligned_cols=218 Identities=20% Similarity=0.327 Sum_probs=138.2
Q ss_pred CCCCCEEEEEcCCCCCCcc-ccchhhhHHHhhCCcEEEEecCC--------------CC-CCCchhHHHhh----ccCCC
Q 004816 489 EEKPPLLVKSHGGPTSEAR-GILNLSIQYWTSRGWAFVDVNYG--------------GS-TGYGREFRERL----LGRWG 548 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~-~~~~~~~~~la~~G~~v~~~d~r--------------Gs-~g~g~~~~~~~----~~~~~ 548 (729)
+++.|+++++||-...... ......-......|++++.+|-. |. .++=..|.... ..+|.
T Consensus 51 ~~~ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~ 130 (316)
T COG0627 51 GRDIPVLYLLSGLTCNEPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWE 130 (316)
T ss_pred CCCCCEEEEeCCCCCCCCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchh
Confidence 5678999999986322211 11223334445678888887422 21 11111111111 11222
Q ss_pred cccHHHHHHHHHHHHhCCCCCC--CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhc----chhhhhh
Q 004816 549 IVDVNDCCSCATFLVGSGKADE--KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAET----HKFESRY 621 (729)
Q Consensus 549 ~~~~~D~~~~~~~l~~~~~~d~--~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~----~~~~~~~ 621 (729)
..-.+++.+ .+.+....+. ++.+|+||||||+-|+.++. ||++|+.+.+.+|+.+........ ..+...+
T Consensus 131 tfl~~ELP~---~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~~~~~~~~g~~~ 207 (316)
T COG0627 131 TFLTQELPA---LWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPTLAMGDPWGGKA 207 (316)
T ss_pred HHHHhhhhH---HHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceeccccccccccccccccccccccccCcc
Confidence 222222222 3333344454 38999999999999999998 889999999999998876332221 1112222
Q ss_pred hhhhcCCh--hhhhhcCcccccCC--------------CCCCEEEEEeCCCCCCC--hHHHHHHHHHHHhCCCCEEEEEE
Q 004816 622 IDNLVGSE--KDYYEKSPINFVDK--------------FSCPIILFQGLEDKVVP--PDQARKIYKALKENGLPVALVEY 683 (729)
Q Consensus 622 ~~~~~~~~--~~~~~~sp~~~~~~--------------i~~PvL~i~G~~D~~vp--~~~~~~~~~~l~~~g~~~~~~~~ 683 (729)
...++|.. ..+.+++|...+++ ...++++-+|..|.... ......+.++++..|.+..+...
T Consensus 208 ~~~~~G~~~~~~w~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~ad~~~~~~~~~~~~~~~a~~~~g~~~~~~~~ 287 (316)
T COG0627 208 FNAMLGPDSDPAWQENDPLSLIEKLVANANTRIWVYGGSPPELLIDNGPADFFLAANNLSTRAFAEALRAAGIPNGVRDQ 287 (316)
T ss_pred HHHhcCCCccccccccCchhHHHHhhhcccccceecccCCCccccccccchhhhhhcccCHHHHHHHHHhcCCCceeeeC
Confidence 33344432 35677777766653 34678888999998753 34578999999999999999999
Q ss_pred CCCCcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 684 EGEQHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 684 ~~~gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
++..|.+ ..+...++..+.|+...|+
T Consensus 288 ~~G~Hsw---~~w~~~l~~~~~~~a~~l~ 313 (316)
T COG0627 288 PGGDHSW---YFWASQLADHLPWLAGALG 313 (316)
T ss_pred CCCCcCH---HHHHHHHHHHHHHHHHHhc
Confidence 8899976 4567888899999998876
No 159
>PRK13616 lipoprotein LpqB; Provisional
Probab=98.93 E-value=3.8e-08 Score=109.53 Aligned_cols=165 Identities=11% Similarity=0.094 Sum_probs=109.7
Q ss_pred CceEEEECCEEEEEE-------CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCC---CC
Q 004816 147 GGAFRIFGDTVIFSN-------YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQ---DA 216 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~-------~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~---~~ 216 (729)
...++++++.++|+. +...+||+.+.. +..++++.+ .....|+|||||++|+|+.+.... ..
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g---g~~~~lt~g-----~~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG---GVAVQVLEG-----HSLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeCC---CcceeeecC-----CCCCCceECCCCCceEEEecCcceEEEec
Confidence 445677788899987 223489999974 556888865 236889999999999998653210 00
Q ss_pred CCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec--CCCCe--ee-eEEecC
Q 004816 217 LNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDV--YK-RVCVAG 291 (729)
Q Consensus 217 ~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~--~~g~~--~~-~~~~~~ 291 (729)
.....+||++++++++.++ ...+....++|||||++|||+.. .+||+.-+. .+|+. .. +.+..+
T Consensus 426 ~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~~---------g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMIIG---------GKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred cCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEEC---------CEEEEEEEEeCCCCceeecccEEeecc
Confidence 0123689999999887765 33345788999999999999981 358873332 14541 11 112333
Q ss_pred CCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 292 FDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 292 ~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
.. .....+.|..|++|+.... .+...++++++++...+.
T Consensus 495 l~----~~~~~l~W~~~~~L~V~~~--~~~~~v~~v~vDG~~~~~ 533 (591)
T PRK13616 495 LG----DTAVSLDWRTGDSLVVGRS--DPEHPVWYVNLDGSNSDA 533 (591)
T ss_pred cC----CccccceEecCCEEEEEec--CCCCceEEEecCCccccc
Confidence 32 3346789999999665543 355779999998765444
No 160
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.91 E-value=2.4e-08 Score=96.73 Aligned_cols=192 Identities=16% Similarity=0.216 Sum_probs=123.0
Q ss_pred CCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc--------------hhHHHh-----------
Q 004816 488 PEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG--------------REFRER----------- 542 (729)
Q Consensus 488 ~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g--------------~~~~~~----------- 542 (729)
+++++|+||+-||-. ..+..|+.+.-.+|++||.|+++..|-....- .+|..-
T Consensus 114 k~~k~PvvvFSHGLg--gsRt~YSa~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~ekef~ 191 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLG--GSRTLYSAYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKEFH 191 (399)
T ss_pred CCCCccEEEEecccc--cchhhHHHHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCceeEE
Confidence 368899999999973 34567788888999999999999999643211 111110
Q ss_pred hccCCCcccHHHHHHHHHHHHh---------------------CCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEe
Q 004816 543 LLGRWGIVDVNDCCSCATFLVG---------------------SGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASL 601 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~---------------------~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~ 601 (729)
++...-...+.+|..|++-|.+ ++.+|..+++++|||+||.+++........|+++|+.
T Consensus 192 irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~FrcaI~l 271 (399)
T KOG3847|consen 192 IRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRCAIAL 271 (399)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccccceeeeeee
Confidence 0000001126777777776655 3457888999999999999998888866689999998
Q ss_pred ccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEE
Q 004816 602 YGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALV 681 (729)
Q Consensus 602 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~ 681 (729)
.+..-... . .+..+++.|+|+|.-+ |.. - .++....++....+..-.++
T Consensus 272 D~WM~Pl~-------------------~---------~~~~~arqP~~finv~-~fQ-~-~en~~vmKki~~~n~g~~~i 320 (399)
T KOG3847|consen 272 DAWMFPLD-------------------Q---------LQYSQARQPTLFINVE-DFQ-W-NENLLVMKKIESQNEGNHVI 320 (399)
T ss_pred eeeecccc-------------------h---------hhhhhccCCeEEEEcc-ccc-c-hhHHHHHHhhhCCCccceEE
Confidence 76421110 0 1233567899998833 322 2 23334444444444444677
Q ss_pred EECCCCcc-cC--------------------C-cccHHHHHHHHHHHHHHHhC
Q 004816 682 EYEGEQHG-FR--------------------K-AENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 682 ~~~~~gH~-~~--------------------~-~~~~~~~~~~~~~fl~~~l~ 712 (729)
.+.|.=|. |. . .+......+..++||++++.
T Consensus 321 t~~GsVHqnfsDfpfv~p~~i~k~f~~kg~~dpy~~~~~~~r~slaFLq~h~d 373 (399)
T KOG3847|consen 321 TLDGSVHQNFSDFPFVTPNWIGKVFKVKGETDPYEAMQIAIRASLAFLQKHLD 373 (399)
T ss_pred EEccceecccccCccccHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHhhhh
Confidence 78787774 11 0 12345667788999999975
No 161
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.90 E-value=5.2e-08 Score=105.12 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=104.4
Q ss_pred hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCccc-HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHH--
Q 004816 511 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVD-VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA-- 587 (729)
Q Consensus 511 ~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~-~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~-- 587 (729)
..++++|.++||.|+.++.+.-+.. ...++..+ ++.+.++++.+.+. ...++|.++|+|+||.+++.
T Consensus 237 ~SlVr~lv~qG~~VflIsW~nP~~~--------~r~~~ldDYv~~i~~Ald~V~~~--tG~~~vnl~GyC~GGtl~a~~~ 306 (560)
T TIGR01839 237 KSFVQYCLKNQLQVFIISWRNPDKA--------HREWGLSTYVDALKEAVDAVRAI--TGSRDLNLLGACAGGLTCAALV 306 (560)
T ss_pred chHHHHHHHcCCeEEEEeCCCCChh--------hcCCCHHHHHHHHHHHHHHHHHh--cCCCCeeEEEECcchHHHHHHH
Confidence 3578999999999999999863321 12232111 34567777777665 44678999999999999886
Q ss_pred --HHh-CCC-cceEEEEeccccChhHH------h--------hh----cc------------------hhhhhhhhh-hc
Q 004816 588 --ALA-FRD-TFKAGASLYGVADLSML------R--------AE----TH------------------KFESRYIDN-LV 626 (729)
Q Consensus 588 --~~~-~~~-~~~a~v~~~~~~d~~~~------~--------~~----~~------------------~~~~~~~~~-~~ 626 (729)
+++ +++ +++.+++.....|+..- . .. .. .+....... +.
T Consensus 307 a~~aA~~~~~~V~sltllatplDf~~~g~l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yll 386 (560)
T TIGR01839 307 GHLQALGQLRKVNSLTYLVSLLDSTMESPAALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLL 386 (560)
T ss_pred HHHHhcCCCCceeeEEeeecccccCCCCcchhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhc
Confidence 444 775 79999988776654310 0 00 00 000000000 01
Q ss_pred CC-------------------------hhhhhhcCccc-----------ccCCCCCCEEEEEeCCCCCCChHHHHHHHHH
Q 004816 627 GS-------------------------EKDYYEKSPIN-----------FVDKFSCPIILFQGLEDKVVPPDQARKIYKA 670 (729)
Q Consensus 627 ~~-------------------------~~~~~~~sp~~-----------~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~ 670 (729)
++ .+.|.++.... .+++|++|+|++.|+.|.++|++.+..+.+.
T Consensus 387 g~~p~~fdll~Wn~D~t~lPg~~~~e~l~ly~~N~L~~pG~l~v~G~~idL~~I~~Pvl~va~~~DHIvPw~s~~~~~~l 466 (560)
T TIGR01839 387 GNEPPAFDILYWNNDTTRLPAAFHGDLLDMFKSNPLTRPDALEVCGTPIDLKKVKCDSFSVAGTNDHITPWDAVYRSALL 466 (560)
T ss_pred CCCcchhhHHHHhCcCccchHHHHHHHHHHHhcCCCCCCCCEEECCEEechhcCCCCeEEEecCcCCcCCHHHHHHHHHH
Confidence 10 01122222111 2678999999999999999999999999887
Q ss_pred HHhCCCCEEEEEECCCCcc
Q 004816 671 LKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 671 l~~~g~~~~~~~~~~~gH~ 689 (729)
+.. +++++..++ ||.
T Consensus 467 ~gs---~~~fvl~~g-GHI 481 (560)
T TIGR01839 467 LGG---KRRFVLSNS-GHI 481 (560)
T ss_pred cCC---CeEEEecCC-Ccc
Confidence 643 678888864 784
No 162
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.87 E-value=4e-06 Score=86.69 Aligned_cols=252 Identities=12% Similarity=0.045 Sum_probs=129.3
Q ss_pred EEEECCEEEEEEC---------CCCcEEEEeCCCCCCC-CeecCCCCCCC---ceeeecceecCCCCEEEEEEeccCCCC
Q 004816 150 FRIFGDTVIFSNY---------KDQRLYKHSIDSKDSS-PLPITPDYGEP---LVSYADGIFDPRFNRYVTVREDRRQDA 216 (729)
Q Consensus 150 ~~~~~~~i~~~~~---------~~~~l~~~d~~~~~~~-~~~lt~~~~~~---~~~~~~~~~SPdG~~l~~~~~~~~~~~ 216 (729)
++++++.++.... ++..|-++|+.+ .+ ...|..++.+. ......+.+||||++++....+.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t--~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p---- 126 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT--HLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP---- 126 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc--CcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC----
Confidence 6666667766665 556899999987 43 33343221100 11224678999999866553332
Q ss_pred CCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee--eeEEecCCCC
Q 004816 217 LNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY--KRVCVAGFDP 294 (729)
Q Consensus 217 ~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~--~~~~~~~~~~ 294 (729)
...+-++|+++++...-..-++...-+..++++..+. +. ...+..+.++.+|+.. ....+...+
T Consensus 127 ---~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~-~~---------Dg~~~~v~~d~~g~~~~~~~~vf~~~~- 192 (352)
T TIGR02658 127 ---SPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMH-CR---------DGSLAKVGYGTKGNPKIKPTEVFHPED- 192 (352)
T ss_pred ---CCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEE-ee---------cCceEEEEecCCCceEEeeeeeecCCc-
Confidence 2578999999887643222222111122222211111 11 1112222222233321 111221211
Q ss_pred CccccccCceeCC-CCcEEEEEecCCCceEEEEEEcCCCeEEEeec---cCccccCCcccccC-cceeeeeecCCCCEEE
Q 004816 295 TIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYS---LDAEFSRPLWVFGI-NSYEIIQSHGEKNLIA 369 (729)
Q Consensus 295 ~~~~~~~~~~wsp-DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~---~~~~~~~~~w~~~~-~~~~~l~~~~~~~~l~ 369 (729)
+ .-..+|.+++ ||+.+|.+.. ..++.+|+.+.+...+.. .........|.|+. ..+.+.+ +++++|
T Consensus 193 ~--~v~~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~---dg~~ly 263 (352)
T TIGR02658 193 E--YLINHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR---ARDRIY 263 (352)
T ss_pred c--ccccCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC---CCCEEE
Confidence 1 2234565666 8888888765 578888976544333221 01111122466543 2245544 778888
Q ss_pred EEEE-------ECCeEEEEEEECCCCceE-eeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 370 CSYR-------QNGRSYLGILDDFGHSLS-LLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 370 ~~s~-------~~g~~~ly~~d~~~g~~~-~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+... .++..+|+++|.++++.. .+..+. ....+ +.+++-++|.++.. ...+..+|..+++.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~-~~~~iavS~Dgkp~lyvtn~~--s~~VsViD~~t~k~ 334 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH-EIDSINVSQDAKPLLYALSTG--DKTLYIFDAETGKE 334 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC-ceeeEEECCCCCeEEEEeCCC--CCcEEEEECcCCeE
Confidence 7553 233468999999988754 444333 33344 55555355555432 23588899888753
No 163
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.85 E-value=4.6e-07 Score=98.76 Aligned_cols=218 Identities=10% Similarity=0.016 Sum_probs=134.2
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCC---CCC
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNM---PWD 268 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~---~~~ 268 (729)
....++||||++|+|..+..+.+ ...|+++|+++|+... ..... ...++.|++||+.++|+..+.... ...
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e----~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~ 200 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSE----WYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGY 200 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSS----EEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred eeeeeECCCCCEEEEEecCCCCc----eEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence 35678999999999998877654 4789999999985432 11111 122389999999999999777542 111
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCc-eEEEEEEcCCC-----eEEEeeccC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF-WNLHKWIESNN-----EVLAIYSLD 341 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~-~~l~~~d~~~g-----~~~~l~~~~ 341 (729)
..+||+..+. ++......++.+.+.. .....+..|+||+ +++.+.. ... ..+|.+++..+ +.+.|....
T Consensus 201 ~~~v~~~~~g-t~~~~d~lvfe~~~~~--~~~~~~~~s~d~~~l~i~~~~-~~~~s~v~~~d~~~~~~~~~~~~~l~~~~ 276 (414)
T PF02897_consen 201 PRQVYRHKLG-TPQSEDELVFEEPDEP--FWFVSVSRSKDGRYLFISSSS-GTSESEVYLLDLDDGGSPDAKPKLLSPRE 276 (414)
T ss_dssp CEEEEEEETT-S-GGG-EEEEC-TTCT--TSEEEEEE-TTSSEEEEEEES-SSSEEEEEEEECCCTTTSS-SEEEEEESS
T ss_pred CcEEEEEECC-CChHhCeeEEeecCCC--cEEEEEEecCcccEEEEEEEc-cccCCeEEEEeccccCCCcCCcEEEeCCC
Confidence 5679999987 5543334555555421 1134567899999 5555555 344 78999999875 566666322
Q ss_pred ccccCCcccccCcceeeeeecCCCCEEEEEEEECC-eEEEEEEECCCCc---eE-eeccCCc--ceEEeeeeCCEEEEEE
Q 004816 342 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDDFGHS---LS-LLDIPFT--DIDNITLGNDCLFVEG 414 (729)
Q Consensus 342 ~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g-~~~ly~~d~~~g~---~~-~lt~~~~--~v~~~~~~~~~~~~~~ 414 (729)
.... .+.-. .++.+|+.++.+. ...|+.++++... .+ .|..+.. .+..+...++.+++..
T Consensus 277 ~~~~---------~~v~~----~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~ 343 (414)
T PF02897_consen 277 DGVE---------YYVDH----HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSY 343 (414)
T ss_dssp SS-E---------EEEEE----ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEE
T ss_pred CceE---------EEEEc----cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEE
Confidence 1110 00101 4566777777543 4789999998776 23 4444433 4566666667666554
Q ss_pred eCCCCCceEEEEEcC-CCcc
Q 004816 415 ASGVEPSSVAKVTLD-DHKL 433 (729)
Q Consensus 415 ~~~~~~~~ly~~d~~-~~~~ 433 (729)
. .+...+|+++++. +...
T Consensus 344 ~-~~~~~~l~v~~~~~~~~~ 362 (414)
T PF02897_consen 344 R-ENGSSRLRVYDLDDGKES 362 (414)
T ss_dssp E-ETTEEEEEEEETT-TEEE
T ss_pred E-ECCccEEEEEECCCCcEE
Confidence 4 4556689999988 4443
No 164
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.84 E-value=4.8e-08 Score=93.38 Aligned_cols=129 Identities=18% Similarity=0.168 Sum_probs=83.9
Q ss_pred CCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCC
Q 004816 455 FSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGST 533 (729)
Q Consensus 455 ~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~ 533 (729)
+...+.+.+... ++ .+..++-.|+. +..|++++.||+..+ .-.|...++.+.++ -..|+++|.||.|
T Consensus 47 Fdekedv~i~~~-~~-t~n~Y~t~~~~--------t~gpil~l~HG~G~S--~LSfA~~a~el~s~~~~r~~a~DlRgHG 114 (343)
T KOG2564|consen 47 FDEKEDVSIDGS-DL-TFNVYLTLPSA--------TEGPILLLLHGGGSS--ALSFAIFASELKSKIRCRCLALDLRGHG 114 (343)
T ss_pred hccccccccCCC-cc-eEEEEEecCCC--------CCccEEEEeecCccc--chhHHHHHHHHHhhcceeEEEeeccccC
Confidence 334455666554 33 67777776642 446999999998443 45566667777664 5667999999766
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEec
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLY 602 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~ 602 (729)
..--+-..... ......|+.+.++++... .+.+|+++||||||.++...+. -|. +.+++.+.
T Consensus 115 eTk~~~e~dlS---~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~k~lps-l~Gl~viD 179 (343)
T KOG2564|consen 115 ETKVENEDDLS---LETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAASKTLPS-LAGLVVID 179 (343)
T ss_pred ccccCChhhcC---HHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhhhhchh-hhceEEEE
Confidence 53222211111 112368888888888754 3568999999999999987775 354 55555543
No 165
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.82 E-value=9.2e-08 Score=88.58 Aligned_cols=115 Identities=24% Similarity=0.283 Sum_probs=87.5
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCC
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKF 644 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i 644 (729)
..++.+||++-|.|+||.+++.++. ++..+.+.+..+++........ ...+ + .. +
T Consensus 88 ~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p~~~~~~---------~~~~-----------~--~~-~- 143 (206)
T KOG2112|consen 88 NGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLPRASIGL---------PGWL-----------P--GV-N- 143 (206)
T ss_pred cCCCccceeEcccCchHHHHHHHHhccccccceeeccccccccchhhc---------cCCc-----------c--cc-C-
Confidence 3578899999999999999999987 7766676666666543111000 0000 0 00 1
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
.+|+++.||+.|++||..-.++..+.|+.++..++++.|++.+|.... +.+..+..|+.+
T Consensus 144 ~~~i~~~Hg~~d~~vp~~~g~~s~~~l~~~~~~~~f~~y~g~~h~~~~-----~e~~~~~~~~~~ 203 (206)
T KOG2112|consen 144 YTPILLCHGTADPLVPFRFGEKSAQFLKSLGVRVTFKPYPGLGHSTSP-----QELDDLKSWIKT 203 (206)
T ss_pred cchhheecccCCceeehHHHHHHHHHHHHcCCceeeeecCCccccccH-----HHHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999997543 556677788776
No 166
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.81 E-value=4.5e-06 Score=84.80 Aligned_cols=264 Identities=12% Similarity=0.085 Sum_probs=145.4
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..+..+.|+| ++.++... .+|...+|..... .....+.... .......+..+ ..++....++.
T Consensus 10 ~~i~~~~~~~~~~~l~~~~----~~g~i~i~~~~~~--~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~~~~ 74 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGS----GDGTIKVWDLETG--ELLRTLKGHT---------GPVRDVAASADGTYLASGSSDKT 74 (289)
T ss_pred CCEEEEEEcCCCCEEEEee----cCcEEEEEEeeCC--CcEEEEecCC---------cceeEEEECCCCCEEEEEcCCCe
Confidence 4567899999 66665543 3567777766433 1111121111 11112333322 24455556789
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAF 245 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~ 245 (729)
|+++++.++ .....+... ........|+|+++.++....+ ..|+++++.+++...... .......
T Consensus 75 i~i~~~~~~-~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~~~~~~~~~i~~ 140 (289)
T cd00200 75 IRLWDLETG-ECVRTLTGH----TSYVSSVAFSPDGRILSSSSRD---------KTIKVWDVETGKCLTTLRGHTDWVNS 140 (289)
T ss_pred EEEEEcCcc-cceEEEecc----CCcEEEEEEcCCCCEEEEecCC---------CeEEEEECCCcEEEEEeccCCCcEEE
Confidence 999999862 233444433 2356778899998765544312 468899998665544333 3445677
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL 324 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l 324 (729)
..|+|+++.|+... ....|+++|+. +++. ...+.... ..+..+.|+|+++ +++.... + .|
T Consensus 141 ~~~~~~~~~l~~~~--------~~~~i~i~d~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~~l~~~~~~--~--~i 201 (289)
T cd00200 141 VAFSPDGTFVASSS--------QDGTIKLWDLR-TGKC--VATLTGHT----GEVNSVAFSPDGEKLLSSSSD--G--TI 201 (289)
T ss_pred EEEcCcCCEEEEEc--------CCCcEEEEEcc-cccc--ceeEecCc----cccceEEECCCcCEEEEecCC--C--cE
Confidence 89999988666443 12348999987 5543 33333333 4567889999998 5555432 3 46
Q ss_pred EEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEE
Q 004816 325 HKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDN 402 (729)
Q Consensus 325 ~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~ 402 (729)
.++|..+++..... ....... .+.|. +++.+++....+|...+| +..+++ ...+......+..
T Consensus 202 ~i~d~~~~~~~~~~~~~~~~i~---------~~~~~----~~~~~~~~~~~~~~i~i~--~~~~~~~~~~~~~~~~~i~~ 266 (289)
T cd00200 202 KLWDLSTGKCLGTLRGHENGVN---------SVAFS----PDGYLLASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTS 266 (289)
T ss_pred EEEECCCCceecchhhcCCceE---------EEEEc----CCCcEEEEEcCCCcEEEE--EcCCceeEEEccccCCcEEE
Confidence 67777765544333 2221222 23333 335566665556655555 555444 3444433445655
Q ss_pred e-eeeCCEEEEEEe
Q 004816 403 I-TLGNDCLFVEGA 415 (729)
Q Consensus 403 ~-~~~~~~~~~~~~ 415 (729)
+ ..+++..++.++
T Consensus 267 ~~~~~~~~~l~~~~ 280 (289)
T cd00200 267 LAWSPDGKRLASGS 280 (289)
T ss_pred EEECCCCCEEEEec
Confidence 5 333334444443
No 167
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=98.79 E-value=3.2e-07 Score=89.05 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=75.8
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
+....+||-+||.|++..+ |....+.|.+.|+.++.+||+|.+-..... . .. ..-.+-...++.|+++-.+
T Consensus 32 gs~~gTVv~~hGsPGSH~D--FkYi~~~l~~~~iR~I~iN~PGf~~t~~~~-~---~~---~~n~er~~~~~~ll~~l~i 102 (297)
T PF06342_consen 32 GSPLGTVVAFHGSPGSHND--FKYIRPPLDEAGIRFIGINYPGFGFTPGYP-D---QQ---YTNEERQNFVNALLDELGI 102 (297)
T ss_pred CCCceeEEEecCCCCCccc--hhhhhhHHHHcCeEEEEeCCCCCCCCCCCc-c---cc---cChHHHHHHHHHHHHHcCC
Confidence 4455689999999988644 455778899999999999999865322111 1 11 1234556666777777666
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
+ +++.++|||.|+-.|++++. +| ..++++++|+
T Consensus 103 ~-~~~i~~gHSrGcenal~la~~~~--~~g~~lin~~ 136 (297)
T PF06342_consen 103 K-GKLIFLGHSRGCENALQLAVTHP--LHGLVLINPP 136 (297)
T ss_pred C-CceEEEEeccchHHHHHHHhcCc--cceEEEecCC
Confidence 5 89999999999999999998 75 4577777764
No 168
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.79 E-value=9.2e-08 Score=91.02 Aligned_cols=196 Identities=17% Similarity=0.163 Sum_probs=105.9
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC--
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK-- 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~-- 567 (729)
.+.-++.+.|.|+.. ..|..+...+-. -+.++.+.|+|-+. .+.+ --..|+.+.++.|...-.
T Consensus 6 ~~~~L~cfP~AGGsa---~~fr~W~~~lp~-~iel~avqlPGR~~---r~~e--------p~~~di~~Lad~la~el~~~ 70 (244)
T COG3208 6 ARLRLFCFPHAGGSA---SLFRSWSRRLPA-DIELLAVQLPGRGD---RFGE--------PLLTDIESLADELANELLPP 70 (244)
T ss_pred CCceEEEecCCCCCH---HHHHHHHhhCCc-hhheeeecCCCccc---ccCC--------cccccHHHHHHHHHHHhccc
Confidence 334456666665332 334444443333 58899999986443 2211 224666666676665522
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh----CCCcceEEEEe---ccccChhHHhhhcchhhhhhhhh----------hcCChh
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA----FRDTFKAGASL---YGVADLSMLRAETHKFESRYIDN----------LVGSEK 630 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~---~~~~d~~~~~~~~~~~~~~~~~~----------~~~~~~ 630 (729)
.-.+..+++||||||.+|.-++. ..-...+.... .|..+..... .+.-+..++.. ++++++
T Consensus 71 ~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i--~~~~D~~~l~~l~~lgG~p~e~led~E 148 (244)
T COG3208 71 LLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQI--HHLDDADFLADLVDLGGTPPELLEDPE 148 (244)
T ss_pred cCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCc--cCCCHHHHHHHHHHhCCCChHHhcCHH
Confidence 22357999999999999988875 11112222222 2211110000 00001111111 112333
Q ss_pred hhhhcCcc-----------cc--cCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHH
Q 004816 631 DYYEKSPI-----------NF--VDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIK 697 (729)
Q Consensus 631 ~~~~~sp~-----------~~--~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~ 697 (729)
.+.-.-|+ .+ -..+.+|+.++.|++|..|..++...+.+..+. .+++..|+| ||.|.+ +...
T Consensus 149 l~~l~LPilRAD~~~~e~Y~~~~~~pl~~pi~~~~G~~D~~vs~~~~~~W~~~t~~---~f~l~~fdG-gHFfl~-~~~~ 223 (244)
T COG3208 149 LMALFLPILRADFRALESYRYPPPAPLACPIHAFGGEKDHEVSRDELGAWREHTKG---DFTLRVFDG-GHFFLN-QQRE 223 (244)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcCcceEEeccCcchhccHHHHHHHHHhhcC---CceEEEecC-cceehh-hhHH
Confidence 22222221 11 246789999999999999988777777666553 789999986 898754 3333
Q ss_pred HHHHHHHHHH
Q 004816 698 FTLEQQMVFF 707 (729)
Q Consensus 698 ~~~~~~~~fl 707 (729)
+..+.+.+.+
T Consensus 224 ~v~~~i~~~l 233 (244)
T COG3208 224 EVLARLEQHL 233 (244)
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 169
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.77 E-value=1.4e-06 Score=84.49 Aligned_cols=115 Identities=22% Similarity=0.240 Sum_probs=74.8
Q ss_pred HHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhh
Q 004816 554 DCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKD 631 (729)
Q Consensus 554 D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (729)
.+..-+. |+.++..++.++.+|+|||+||.+++.++. +|+.|...++.+|...+... ..
T Consensus 119 fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw~n~-------------------~~ 179 (264)
T COG2819 119 FLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNE-------------------AI 179 (264)
T ss_pred HHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhhCCH-------------------HH
Confidence 3344444 444457789999999999999999999987 99999999999996544321 11
Q ss_pred hhhcCcccccCCCCCCEEEEEeCC--CC---C---CChHHHHHHHHHHHh-CCCCEEEEEECCCCcc
Q 004816 632 YYEKSPINFVDKFSCPIILFQGLE--DK---V---VPPDQARKIYKALKE-NGLPVALVEYEGEQHG 689 (729)
Q Consensus 632 ~~~~sp~~~~~~i~~PvL~i~G~~--D~---~---vp~~~~~~~~~~l~~-~g~~~~~~~~~~~gH~ 689 (729)
+....-.... + ..++.+..|.. |. . ....++.+..+.+++ .|..+.+..+|+++|+
T Consensus 180 l~~~~~~~~~-~-~~~i~l~iG~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~~~~H~ 244 (264)
T COG2819 180 LREIESLKLL-K-TKRICLYIGSGELDSSRSIRMAENKQEAAELSSLLEKRTGARLVFQEEPLEHHG 244 (264)
T ss_pred hccccccccC-C-CcceEEEecccccCcchhhhhhhHHHHHHHHHHHHhhccCCceEeccccccccc
Confidence 1111110111 2 44555554443 32 1 223456666667777 7888899999999996
No 170
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.77 E-value=6.7e-06 Score=78.57 Aligned_cols=230 Identities=10% Similarity=0.026 Sum_probs=135.2
Q ss_pred EEEEEECCCCcEEEEeCCCCC---C-CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 156 TVIFSNYKDQRLYKHSIDSKD---S-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~---~-~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
.++++..++..+.+|++...+ | ..++++.+ ..++.+..+|+||++.+-...+ ..|.++|+++|
T Consensus 29 ~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GH----sH~v~dv~~s~dg~~alS~swD---------~~lrlWDl~~g 95 (315)
T KOG0279|consen 29 DILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGH----SHFVSDVVLSSDGNFALSASWD---------GTLRLWDLATG 95 (315)
T ss_pred ceEEEcccceEEEEEEeccCccccCceeeeeecc----ceEecceEEccCCceEEecccc---------ceEEEEEecCC
Confidence 567777777778888875411 2 24566655 5788999999999975444443 46888999998
Q ss_pred ceEEeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 232 NIQVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 232 ~~~~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
+.++...+. ....+.++|||.++|+--+. ...|-++++- ++.. .+...+... ..+..++|+|+..
T Consensus 96 ~~t~~f~GH~~dVlsva~s~dn~qivSGSr--------DkTiklwnt~-g~ck--~t~~~~~~~---~WVscvrfsP~~~ 161 (315)
T KOG0279|consen 96 ESTRRFVGHTKDVLSVAFSTDNRQIVSGSR--------DKTIKLWNTL-GVCK--YTIHEDSHR---EWVSCVRFSPNES 161 (315)
T ss_pred cEEEEEEecCCceEEEEecCCCceeecCCC--------cceeeeeeec-ccEE--EEEecCCCc---CcEEEEEEcCCCC
Confidence 877665544 34567899999999975442 2347777776 3322 333333312 4567889999974
Q ss_pred -EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 311 -LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 311 -l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
.++++.... ..+-++|+++-+.+.-...... -.+.+.+. .++.+..+..++|..-|| |++.++
T Consensus 162 ~p~Ivs~s~D--ktvKvWnl~~~~l~~~~~gh~~--------~v~t~~vS----pDGslcasGgkdg~~~Lw--dL~~~k 225 (315)
T KOG0279|consen 162 NPIIVSASWD--KTVKVWNLRNCQLRTTFIGHSG--------YVNTVTVS----PDGSLCASGGKDGEAMLW--DLNEGK 225 (315)
T ss_pred CcEEEEccCC--ceEEEEccCCcchhhccccccc--------cEEEEEEC----CCCCEEecCCCCceEEEE--EccCCc
Confidence 444433213 3455567776555443321110 11233444 445666666667765555 555554
Q ss_pred eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 390 LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 390 ~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
--.--.....|.++ +.+...+++.+. .. .+-.+|++++.
T Consensus 226 ~lysl~a~~~v~sl~fspnrywL~~at-~~---sIkIwdl~~~~ 265 (315)
T KOG0279|consen 226 NLYSLEAFDIVNSLCFSPNRYWLCAAT-AT---SIKIWDLESKA 265 (315)
T ss_pred eeEeccCCCeEeeEEecCCceeEeecc-CC---ceEEEeccchh
Confidence 32222334556666 555555544433 22 26667777765
No 171
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.75 E-value=1.2e-07 Score=94.23 Aligned_cols=208 Identities=16% Similarity=0.112 Sum_probs=121.1
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
-++.|.++++||--++. ..|......|+.. |-.|+.+|.|-.|- +....... .....+|+...++.......
T Consensus 49 ~~~~Pp~i~lHGl~GS~--~Nw~sv~k~Ls~~l~~~v~~vd~RnHG~---Sp~~~~h~--~~~ma~dv~~Fi~~v~~~~~ 121 (315)
T KOG2382|consen 49 LERAPPAIILHGLLGSK--ENWRSVAKNLSRKLGRDVYAVDVRNHGS---SPKITVHN--YEAMAEDVKLFIDGVGGSTR 121 (315)
T ss_pred cCCCCceEEecccccCC--CCHHHHHHHhcccccCceEEEecccCCC---CccccccC--HHHHHHHHHHHHHHcccccc
Confidence 45678899999964443 4455555666553 67899999985443 22222111 23446777777776654322
Q ss_pred CCCCcEEEEEcChHH-HHHHHHHh-CCCcceEEEEec--c-ccC-----hhHHhh---hcchh-----------------
Q 004816 568 ADEKRLCITGGSAGG-YTTLAALA-FRDTFKAGASLY--G-VAD-----LSMLRA---ETHKF----------------- 617 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG-~~a~~~~~-~~~~~~a~v~~~--~-~~d-----~~~~~~---~~~~~----------------- 617 (729)
..++.|+|||||| -+++.... .|+.+..++... | .+. ...+.. ..+..
T Consensus 122 --~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~D~sP~~~~~~~~e~~e~i~~m~~~d~~~~~~~~rke~~~~l~~~ 199 (315)
T KOG2382|consen 122 --LDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVEDISPGGVGRSYGEYRELIKAMIQLDLSIGVSRGRKEALKSLIEV 199 (315)
T ss_pred --cCCceecccCcchHHHHHHHHHhcCcccceeEEEecCCccCCcccchHHHHHHHHHhccccccccccHHHHHHHHHHH
Confidence 3579999999999 44444333 788776666542 2 110 000000 00000
Q ss_pred -----hhhhhh-hhc-C----------Ch----hhhh---hcCccccc--CCCCCCEEEEEeCCCCCCChHHHHHHHHHH
Q 004816 618 -----ESRYID-NLV-G----------SE----KDYY---EKSPINFV--DKFSCPIILFQGLEDKVVPPDQARKIYKAL 671 (729)
Q Consensus 618 -----~~~~~~-~~~-~----------~~----~~~~---~~sp~~~~--~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l 671 (729)
...++. .+. + +. +.+. ..+.-..+ .....|+|+++|.++..+|.++-..+...+
T Consensus 200 ~~d~~~~~fi~~nl~~~~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~pvlfi~g~~S~fv~~~~~~~~~~~f 279 (315)
T KOG2382|consen 200 GFDNLVRQFILTNLKKSPSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTGPVLFIKGLQSKFVPDEHYPRMEKIF 279 (315)
T ss_pred hcchHHHHHHHHhcCcCCCCCceEEEeCHHHHHHHHHHHHhhcccccccccccccceeEEecCCCCCcChhHHHHHHHhc
Confidence 000000 000 0 00 1111 11111112 445689999999999999987766666665
Q ss_pred HhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 672 KENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 672 ~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
. .+++++++++||+.. -++.+++.+.+.+|+.++
T Consensus 280 p----~~e~~~ld~aGHwVh-~E~P~~~~~~i~~Fl~~~ 313 (315)
T KOG2382|consen 280 P----NVEVHELDEAGHWVH-LEKPEEFIESISEFLEEP 313 (315)
T ss_pred c----chheeecccCCceee-cCCHHHHHHHHHHHhccc
Confidence 5 479999999999864 367788889999988764
No 172
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=9.2e-07 Score=89.82 Aligned_cols=213 Identities=11% Similarity=0.075 Sum_probs=134.6
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYK 169 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 169 (729)
.+.++++.|...+.-+.+ -+++..|+..+.. ....|...-+ .-..-.-..|.+.|...+|.+.+..-+|.
T Consensus 215 ~I~sv~FHp~~plllvaG---~d~~lrifqvDGk---~N~~lqS~~l----~~fPi~~a~f~p~G~~~i~~s~rrky~ys 284 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAG---LDGTLRIFQVDGK---VNPKLQSIHL----EKFPIQKAEFAPNGHSVIFTSGRRKYLYS 284 (514)
T ss_pred CceEEEecCCCceEEEec---CCCcEEEEEecCc---cChhheeeee----ccCccceeeecCCCceEEEecccceEEEE
Confidence 456888998666666654 4677788887643 2222321110 00111234566667668888888888999
Q ss_pred EeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeC
Q 004816 170 HSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMD 249 (729)
Q Consensus 170 ~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~S 249 (729)
||+.+ .+..+|....+-+...+..+.+|||+++|+..-. .+.|+++...+++...-..-.+.....+||
T Consensus 285 yDle~--ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~---------~G~I~lLhakT~eli~s~KieG~v~~~~fs 353 (514)
T KOG2055|consen 285 YDLET--AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN---------NGHIHLLHAKTKELITSFKIEGVVSDFTFS 353 (514)
T ss_pred eeccc--cccccccCCCCcccchhheeEecCCCCeEEEccc---------CceEEeehhhhhhhhheeeeccEEeeEEEe
Confidence 99998 7777777654333344567889999998877643 367999998887643333345677889999
Q ss_pred CCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEc
Q 004816 250 PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 250 PDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~ 329 (729)
.||+.|+.+. ...+||++|+. .... ...+.+.. . .+-...+-|++|+++.+... .|.-+||-.+-
T Consensus 354 Sdsk~l~~~~--------~~GeV~v~nl~-~~~~--~~rf~D~G-~--v~gts~~~S~ng~ylA~GS~-~GiVNIYd~~s 418 (514)
T KOG2055|consen 354 SDSKELLASG--------GTGEVYVWNLR-QNSC--LHRFVDDG-S--VHGTSLCISLNGSYLATGSD-SGIVNIYDGNS 418 (514)
T ss_pred cCCcEEEEEc--------CCceEEEEecC-Ccce--EEEEeecC-c--cceeeeeecCCCceEEeccC-cceEEEeccch
Confidence 9999886554 23479999998 3433 22232221 1 33456788899984444444 68888885432
Q ss_pred --CCCeEEEee
Q 004816 330 --SNNEVLAIY 338 (729)
Q Consensus 330 --~~g~~~~l~ 338 (729)
.+..++.+.
T Consensus 419 ~~~s~~PkPik 429 (514)
T KOG2055|consen 419 CFASTNPKPIK 429 (514)
T ss_pred hhccCCCCchh
Confidence 234444444
No 173
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.74 E-value=4.9e-08 Score=99.17 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHh-hCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWT-SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la-~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
..|++|++||.........+..+...+. ..+|.|+++|+++... ..+..... .. ....+++...+++|.+...++
T Consensus 35 ~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~~~nVi~vD~~~~~~--~~y~~a~~-~~-~~v~~~la~~l~~L~~~~g~~ 110 (275)
T cd00707 35 SRPTRFIIHGWTSSGEESWISDLRKAYLSRGDYNVIVVDWGRGAN--PNYPQAVN-NT-RVVGAELAKFLDFLVDNTGLS 110 (275)
T ss_pred CCCcEEEEcCCCCCCCCcHHHHHHHHHHhcCCCEEEEEECccccc--cChHHHHH-hH-HHHHHHHHHHHHHHHHhcCCC
Confidence 4588999999754432222233444444 4689999999987522 11211111 00 011367788889888875567
Q ss_pred CCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 570 EKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
.+++.++|||+||++|..++. ++++++.++.+.|..
T Consensus 111 ~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~ 147 (275)
T cd00707 111 LENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAG 147 (275)
T ss_pred hHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCc
Confidence 789999999999999999998 888999999998764
No 174
>PRK10115 protease 2; Provisional
Probab=98.73 E-value=1.3e-06 Score=100.09 Aligned_cols=218 Identities=10% Similarity=0.000 Sum_probs=132.5
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+..+.|||||++|+|..+..+.+ ..+|+++|+++|+ ...+... . ...+|++||+.|+|+..++.. ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E----~~~l~v~d~~tg~~l~~~i~~~-~--~~~~w~~D~~~~~y~~~~~~~--~~ 197 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRR----QYGIRFRNLETGNWYPELLDNV-E--PSFVWANDSWTFYYVRKHPVT--LL 197 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcE----EEEEEEEECCCCCCCCccccCc-c--eEEEEeeCCCEEEEEEecCCC--CC
Confidence 4567788999999999998776655 5889999999886 3334322 1 458999999999999874321 13
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC-CCc-EEEEEecCCCceEEEEEE--cCCCeEEEeeccCccc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGE-LFFVTDRKNGFWNLHKWI--ESNNEVLAIYSLDAEF 344 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-DG~-l~~~~~~~~g~~~l~~~d--~~~g~~~~l~~~~~~~ 344 (729)
..+||+.++. ++......++.+.+ ....-..|.+ |++ +++.+.. .....++.++ ..+++.+.+.......
T Consensus 198 ~~~v~~h~lg-t~~~~d~lv~~e~~----~~~~~~~~~s~d~~~l~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 271 (686)
T PRK10115 198 PYQVWRHTIG-TPASQDELVYEEKD----DTFYVSLHKTTSKHYVVIHLAS-ATTSEVLLLDAELADAEPFVFLPRRKDH 271 (686)
T ss_pred CCEEEEEECC-CChhHCeEEEeeCC----CCEEEEEEEcCCCCEEEEEEEC-CccccEEEEECcCCCCCceEEEECCCCC
Confidence 3679999998 66322344555443 1111123444 888 5544444 3334566666 3344444444221111
Q ss_pred cCCcccccCcceeeeeecCCCCEEEEEEEEC-CeEEEEEEECC-CCceEeeccC--CcceEEeeeeCCEEEEEEeCCCCC
Q 004816 345 SRPLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDF-GHSLSLLDIP--FTDIDNITLGNDCLFVEGASGVEP 420 (729)
Q Consensus 345 ~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~-g~~~ly~~d~~-~g~~~~lt~~--~~~v~~~~~~~~~~~~~~~~~~~~ 420 (729)
.+.+.. .++.+|+.++.+ ....|+.++++ .++++.|-.+ ...+..+...++.+++. ...+..
T Consensus 272 ----------~~~~~~---~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~-~~~~g~ 337 (686)
T PRK10115 272 ----------EYSLDH---YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVE-ERQRGL 337 (686)
T ss_pred ----------EEEEEe---CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEE-EEeCCE
Confidence 011111 446777777654 45678888887 4566666555 34577764445555444 445556
Q ss_pred ceEEEEEcCCCcceeee
Q 004816 421 SSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 421 ~~ly~~d~~~~~~~~lt 437 (729)
..++.+++.+++.+.|+
T Consensus 338 ~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 338 TSLRQINRKTREVIGIA 354 (686)
T ss_pred EEEEEEcCCCCceEEec
Confidence 67899988776666554
No 175
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.73 E-value=9.8e-07 Score=89.17 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=74.2
Q ss_pred CCCCEEEEEcCCCCCCccccch-----hhhHHHhhC-------CcEEEEecCCCCC-CC-chhHHHhh----ccCCCccc
Q 004816 490 EKPPLLVKSHGGPTSEARGILN-----LSIQYWTSR-------GWAFVDVNYGGST-GY-GREFRERL----LGRWGIVD 551 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~-----~~~~~la~~-------G~~v~~~d~rGs~-g~-g~~~~~~~----~~~~~~~~ 551 (729)
.+-.+||++|+-.+........ .+.+.+..- -|-|+++|.-|+. |. |..-.... ..++....
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 4557999999964433222211 133334333 4899999988865 32 22111111 11234467
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEE-EEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 552 VNDCCSCATFLVGSGKADEKRLC-ITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
+.|.+.+-+.|++.-.| +++. ++|.||||+.++..+. +|+++..++.++..
T Consensus 129 i~D~V~aq~~ll~~LGI--~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~~ 181 (368)
T COG2021 129 IRDMVRAQRLLLDALGI--KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIATA 181 (368)
T ss_pred HHHHHHHHHHHHHhcCc--ceEeeeeccChHHHHHHHHHHhChHHHhhhheeccc
Confidence 89999999888887555 4555 9999999999998886 99999888877653
No 176
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.73 E-value=2.7e-06 Score=85.49 Aligned_cols=223 Identities=15% Similarity=0.150 Sum_probs=127.9
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceec-CCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFD-PRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~S-PdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
|....+.++|++-..++|+++++++ +..+.+... . .....+. +||+ +++... ..+.++|+
T Consensus 7 ~d~~~g~l~~~D~~~~~i~~~~~~~--~~~~~~~~~----~--~~G~~~~~~~g~-l~v~~~----------~~~~~~d~ 67 (246)
T PF08450_consen 7 WDPRDGRLYWVDIPGGRIYRVDPDT--GEVEVIDLP----G--PNGMAFDRPDGR-LYVADS----------GGIAVVDP 67 (246)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTT--TEEEEEESS----S--EEEEEEECTTSE-EEEEET----------TCEEEEET
T ss_pred EECCCCEEEEEEcCCCEEEEEECCC--CeEEEEecC----C--CceEEEEccCCE-EEEEEc----------CceEEEec
Confidence 3333568999988889999999987 655544433 1 3455666 6755 443332 23666699
Q ss_pred CCCceEEeeeC------CCeeeeeeeCCCCCeEEEEEecCCCCCC-CCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 229 NGQNIQVLVSG------SDFYAFPRMDPRGERMAWIEWHHPNMPW-DKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 229 ~~g~~~~lt~~------~~~~~~~~~SPDG~~la~~~~~~~~~~~-~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++++.+.+... ....+..+++|||+ |++.......... ....||.++.+ ++. .....+. ....
T Consensus 68 ~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~--~~~--~~~~~~~-----~~pN 137 (246)
T PF08450_consen 68 DTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD--GKV--TVVADGL-----GFPN 137 (246)
T ss_dssp TTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT--SEE--EEEEEEE-----SSEE
T ss_pred CCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC--CeE--EEEecCc-----cccc
Confidence 99988877542 23456779999999 7777644332111 11679998865 443 2222222 3446
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcC--CCeE---EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIES--NNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~--~g~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
.++|+|||+.+|.++. ...+|++++++ +++. +.+........ ..+.+.+. .++.||++.. +
T Consensus 138 Gi~~s~dg~~lyv~ds--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g------~pDG~~vD----~~G~l~va~~--~ 203 (246)
T PF08450_consen 138 GIAFSPDGKTLYVADS--FNGRIWRFDLDADGGELSNRRVFIDFPGGPG------YPDGLAVD----SDGNLWVADW--G 203 (246)
T ss_dssp EEEEETTSSEEEEEET--TTTEEEEEEEETTTCCEEEEEEEEE-SSSSC------EEEEEEEB----TTS-EEEEEE--T
T ss_pred ceEECCcchheeeccc--ccceeEEEeccccccceeeeeeEEEcCCCCc------CCCcceEc----CCCCEEEEEc--C
Confidence 7899999995455554 34568888875 3312 22222211110 11233443 4455666544 3
Q ss_pred eEEEEEEECCCCceEeeccCCcceEEee---eeCCEEEEEEe
Q 004816 377 RSYLGILDDFGHSLSLLDIPFTDIDNIT---LGNDCLFVEGA 415 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~lt~~~~~v~~~~---~~~~~~~~~~~ 415 (729)
...|++++.++..+..+..+......+. .+.+.+++.++
T Consensus 204 ~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 204 GGRIVVFDPDGKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp TTEEEEEETTSCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred CCEEEEECCCccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 4478888999777777877755666662 24455655543
No 177
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=98.72 E-value=3.4e-07 Score=89.89 Aligned_cols=221 Identities=17% Similarity=0.126 Sum_probs=125.4
Q ss_pred CcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC----CcEEEEecCCCC
Q 004816 457 LPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR----GWAFVDVNYGGS 532 (729)
Q Consensus 457 ~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~----G~~v~~~d~rGs 532 (729)
..+.+.+.+. -..+....++.|++.. +..++|++++.||--+.....-. .....+... .-.++.+|+---
T Consensus 68 ~~~~~~~~~~-l~~~~~~vv~lppgy~----~~~k~pvl~~~DG~~~~~~g~i~-~~~dsli~~g~i~pai~vgid~~d~ 141 (299)
T COG2382 68 PVEEILYSSE-LLSERRRVVYLPPGYN----PLEKYPVLYLQDGQDWFRSGRIP-RILDSLIAAGEIPPAILVGIDYIDV 141 (299)
T ss_pred chhhhhhhhh-hccceeEEEEeCCCCC----ccccccEEEEeccHHHHhcCChH-HHHHHHHHcCCCCCceEEecCCCCH
Confidence 3455556555 3344555667777733 47899999999995333322222 233444444 467888887311
Q ss_pred CCCchhHHHhhccCCCcccHHHH-HHHHHHHHhCCC--CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 533 TGYGREFRERLLGRWGIVDVNDC-CSCATFLVGSGK--ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~-~~~~~~l~~~~~--~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
.. +........ ...+.+ .+.+-++.+... -+.++-+++|.|+||..+++++. +|++|..+++.+|.++..
T Consensus 142 ----~~-R~~~~~~n~-~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 142 ----KK-RREELHCNE-AYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred ----HH-HHHHhcccH-HHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 11 111111110 011222 233445555432 35677899999999999999998 999999999999987754
Q ss_pred HHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCc
Q 004816 609 MLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQH 688 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH 688 (729)
-..... ..+.....+-......-..-++...++.+.+. ....++++.|+..|.++.+..|+| ||
T Consensus 216 ~~~~~~-------------~~~~~~~l~~~~a~~~~~~~~l~~g~~~~~~~--~pNr~L~~~L~~~g~~~~yre~~G-gH 279 (299)
T COG2382 216 PLDTQP-------------QGEVAESLKILHAIGTDERIVLTTGGEEGDFL--RPNRALAAQLEKKGIPYYYREYPG-GH 279 (299)
T ss_pred cccccc-------------ccchhhhhhhhhccCccceEEeecCCcccccc--chhHHHHHHHHhcCCcceeeecCC-CC
Confidence 221100 00011101111111222232333344444444 457889999999999999999999 99
Q ss_pred ccCCcccHHHHHHHHHHHHHHHh
Q 004816 689 GFRKAENIKFTLEQQMVFFARVV 711 (729)
Q Consensus 689 ~~~~~~~~~~~~~~~~~fl~~~l 711 (729)
.+. .+-..+.++|...+
T Consensus 280 dw~------~Wr~~l~~~L~~l~ 296 (299)
T COG2382 280 DWA------WWRPALAEGLQLLL 296 (299)
T ss_pred chh------HhHHHHHHHHHHhh
Confidence 642 33334455555544
No 178
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.70 E-value=6.3e-07 Score=90.56 Aligned_cols=200 Identities=15% Similarity=0.113 Sum_probs=116.5
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchh-HHHhhc------
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGRE-FRERLL------ 544 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~-~~~~~~------ 544 (729)
.+..++.|..-+ .+..|++|.+.|.+..........++.-|++.|++.+.+..+= ||.. ......
T Consensus 77 a~~~~~~P~~~~-----~~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~gi~s~~le~Py---yg~RkP~~Q~~s~l~~V 148 (348)
T PF09752_consen 77 ARFQLLLPKRWD-----SPYRPVCIHLAGTGDHGFWRRRRLMARPLLKEGIASLILENPY---YGQRKPKDQRRSSLRNV 148 (348)
T ss_pred eEEEEEECCccc-----cCCCceEEEecCCCccchhhhhhhhhhHHHHcCcceEEEeccc---ccccChhHhhcccccch
Confidence 344455576521 3457999999986443322233345777788899988887432 2211 111000
Q ss_pred ---cCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc--------------C
Q 004816 545 ---GRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA--------------D 606 (729)
Q Consensus 545 ---~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~--------------d 606 (729)
-..|...+.|....+.|+.++++ .+++|.|.||||++|..+++ .|..+..+-+.++.+ +
T Consensus 149 sDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls~~sAs~vFt~Gvls~~i~ 225 (348)
T PF09752_consen 149 SDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVPCLSWSSASVVFTEGVLSNSIN 225 (348)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEEeecccCCCcchhhhhhhcCCC
Confidence 11234457888899999999965 59999999999999998888 777665554444322 2
Q ss_pred hhHHhhhcchhhhhhhhhhc------------------CChh----hhhhcCcccccCCCCC-----CEEEEEeCCCCCC
Q 004816 607 LSMLRAETHKFESRYIDNLV------------------GSEK----DYYEKSPINFVDKFSC-----PIILFQGLEDKVV 659 (729)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~------------------~~~~----~~~~~sp~~~~~~i~~-----PvL~i~G~~D~~v 659 (729)
|..+..... ...|.+... .+.+ .....+-..++.+..+ .+.++.+++|..|
T Consensus 226 W~~L~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~m~~~md~~T~l~nf~~P~dp~~ii~V~A~~DaYV 303 (348)
T PF09752_consen 226 WDALEKQFE--DTVYEEEISDIPAQNKSLPLDSMEERRRDREALRFMRGVMDSFTHLTNFPVPVDPSAIIFVAAKNDAYV 303 (348)
T ss_pred HHHHHHHhc--ccchhhhhcccccCcccccchhhccccchHHHHHHHHHHHHhhccccccCCCCCCCcEEEEEecCceEe
Confidence 222221100 000000000 0011 0111122334444433 3788899999999
Q ss_pred ChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 660 PPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 660 p~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
|..+...+.+.+. .+++.++++ ||.
T Consensus 304 Pr~~v~~Lq~~WP----GsEvR~l~g-GHV 328 (348)
T PF09752_consen 304 PRHGVLSLQEIWP----GSEVRYLPG-GHV 328 (348)
T ss_pred chhhcchHHHhCC----CCeEEEecC-CcE
Confidence 9988887777765 457888877 996
No 179
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.70 E-value=8.2e-06 Score=84.38 Aligned_cols=229 Identities=12% Similarity=0.066 Sum_probs=118.0
Q ss_pred CCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC------------
Q 004816 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG------------ 230 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~------------ 230 (729)
..|.+.+||... +...|-.+-..-..++.|..|++||++|+.+-+.... ..++|.+|..+
T Consensus 79 ~sG~vRIWdtt~---~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-----fg~~F~~DSG~SvGei~GhSr~i 150 (603)
T KOG0318|consen 79 VSGKVRIWDTTQ---KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-----FGHVFLWDSGNSVGEITGHSRRI 150 (603)
T ss_pred CcCcEEEEeccC---cceeeeeeeeecccccccceeCCCCcEEEEEecCccc-----eeEEEEecCCCccceeeccceeE
Confidence 456788888653 2222222210012457899999999999998664421 24455555432
Q ss_pred -------CceEEeee-C----------------------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC
Q 004816 231 -------QNIQVLVS-G----------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 280 (729)
Q Consensus 231 -------g~~~~lt~-~----------------------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~ 280 (729)
..+-++.. + ..|....++||||++.+-++.| ..++++|=. +
T Consensus 151 ns~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsD--------gki~iyDGk-t 221 (603)
T KOG0318|consen 151 NSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSD--------GKIYIYDGK-T 221 (603)
T ss_pred eeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCC--------ccEEEEcCC-C
Confidence 12222221 1 1245567899999988876632 459999866 5
Q ss_pred CCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceee
Q 004816 281 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEI 358 (729)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~ 358 (729)
|+. +-.+.+.+ ...+++..+.||||++ ++-.+.+ ....|| |..+++.. .+.-.. .+.+.. . ...|
T Consensus 222 ge~--vg~l~~~~-aHkGsIfalsWsPDs~~~~T~SaD--kt~KIW--dVs~~slv~t~~~~~-~v~dqq--v---G~lW 288 (603)
T KOG0318|consen 222 GEK--VGELEDSD-AHKGSIFALSWSPDSTQFLTVSAD--KTIKIW--DVSTNSLVSTWPMGS-TVEDQQ--V---GCLW 288 (603)
T ss_pred ccE--EEEecCCC-CccccEEEEEECCCCceEEEecCC--ceEEEE--EeeccceEEEeecCC-chhceE--E---EEEE
Confidence 654 33344222 1117788899999998 6555433 344555 55555433 232111 111100 0 0111
Q ss_pred eeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 359 IQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 359 l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.++.|+. -.-+|...++ +++... ++.+....-.|..+ ..+++..+|.++-. +.+...+..+|.
T Consensus 289 -----qkd~lIt-VSl~G~in~l--n~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD---G~I~~W~~~~g~ 353 (603)
T KOG0318|consen 289 -----QKDHLIT-VSLSGTINYL--NPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD---GHINSWDSGSGT 353 (603)
T ss_pred -----eCCeEEE-EEcCcEEEEe--cccCCChhheecccccceeEEEEcCCCCEEEeeccC---ceEEEEecCCcc
Confidence 1222332 2234554444 333333 33444455677777 44455555555433 245555555554
No 180
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.69 E-value=8.2e-06 Score=82.89 Aligned_cols=226 Identities=11% Similarity=0.137 Sum_probs=129.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI- 233 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~- 233 (729)
.+++....++.+++|++.+ +. ...+... ........|+|+++.++....+ ..|+++++.+++.
T Consensus 22 ~~l~~~~~~g~i~i~~~~~--~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~~---------~~i~i~~~~~~~~~ 86 (289)
T cd00200 22 KLLATGSGDGTIKVWDLET--GELLRTLKGH----TGPVRDVAASADGTYLASGSSD---------KTIRLWDLETGECV 86 (289)
T ss_pred CEEEEeecCcEEEEEEeeC--CCcEEEEecC----CcceeEEEECCCCCEEEEEcCC---------CeEEEEEcCcccce
Confidence 3344444578899999886 43 2333333 2334678899999887766542 4688999987543
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
..+...........|+|+++.|+... ....|.++|+. +++. ...+.... ..+..+.|+|++++++
T Consensus 87 ~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~i~~~~~~-~~~~--~~~~~~~~----~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 87 RTLTGHTSYVSSVAFSPDGRILSSSS--------RDKTIKVWDVE-TGKC--LTTLRGHT----DWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEEeccCCcEEEEEEcCCCCEEEEec--------CCCeEEEEECC-CcEE--EEEeccCC----CcEEEEEEcCcCCEEE
Confidence 34443344567789999977554333 13458999987 4543 33333333 4567789999987555
Q ss_pred EEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS- 391 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~- 391 (729)
.... .+ .|.++|..+++...... ....+....|.+ +++.+++... ++. |..++...++..
T Consensus 152 ~~~~-~~--~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~l~~~~~-~~~--i~i~d~~~~~~~~ 213 (289)
T cd00200 152 SSSQ-DG--TIKLWDLRTGKCVATLTGHTGEVNSVAFSP------------DGEKLLSSSS-DGT--IKLWDLSTGKCLG 213 (289)
T ss_pred EEcC-CC--cEEEEEccccccceeEecCccccceEEECC------------CcCEEEEecC-CCc--EEEEECCCCceec
Confidence 5543 23 46677777655443332 222222333332 5556665554 554 455566655443
Q ss_pred eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 392 LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 392 ~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+......+..+ ..+++.+++..+ ....++.++...++
T Consensus 214 ~~~~~~~~i~~~~~~~~~~~~~~~~---~~~~i~i~~~~~~~ 252 (289)
T cd00200 214 TLRGHENGVNSVAFSPDGYLLASGS---EDGTIRVWDLRTGE 252 (289)
T ss_pred chhhcCCceEEEEEcCCCcEEEEEc---CCCcEEEEEcCCce
Confidence 332334456656 333455554443 22467777776554
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.68 E-value=9.1e-07 Score=84.80 Aligned_cols=122 Identities=13% Similarity=0.128 Sum_probs=77.2
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.||.++..+ .....+.-.. ...+.+++|||+|++++.+....+ ..+-++|+++..+..+. ....+.
T Consensus 40 ~l~~~~~~~--~~~~~i~l~~---~~~I~~~~WsP~g~~favi~g~~~-------~~v~lyd~~~~~i~~~~--~~~~n~ 105 (194)
T PF08662_consen 40 ELFYLNEKN--IPVESIELKK---EGPIHDVAWSPNGNEFAVIYGSMP-------AKVTLYDVKGKKIFSFG--TQPRNT 105 (194)
T ss_pred EEEEEecCC--CccceeeccC---CCceEEEEECcCCCEEEEEEccCC-------cccEEEcCcccEeEeec--CCCceE
Confidence 688887765 5455554321 123789999999999877754322 34666677644344442 334466
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
..|||+|++|+..+... ...+|.++|+. +.+. +... .. .....+.|||||+ ++...
T Consensus 106 i~wsP~G~~l~~~g~~n-----~~G~l~~wd~~-~~~~--i~~~--~~----~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 106 ISWSPDGRFLVLAGFGN-----LNGDLEFWDVR-KKKK--ISTF--EH----SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEECCCCCEEEEEEccC-----CCcEEEEEECC-CCEE--eecc--cc----CcEEEEEEcCCCCEEEEEE
Confidence 89999999999877432 23568889987 3332 2222 21 3446789999999 55433
No 182
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=2.1e-06 Score=87.26 Aligned_cols=242 Identities=9% Similarity=0.029 Sum_probs=147.6
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
++.+..+.+. .++.+.+.++.|-++.+++ +.-..|+.-. ..........|+|+|+..+|++... .-+|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDG--k~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rr--------ky~y 283 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDG--KVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRR--------KYLY 283 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecC--ccChhheeee-eccCccceeeecCCCceEEEecccc--------eEEE
Confidence 4555666655 7888888888776777765 4444555431 0012235567999999777776654 5699
Q ss_pred EEEcCCCceEEeeeC--C--CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccc
Q 004816 225 AIALNGQNIQVLVSG--S--DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 300 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~--~--~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 300 (729)
.+|+.+.++..|-.. . .....+..||||+.|++.. ....|+++... ++++ +..+.- + +.+
T Consensus 284 syDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G--------~~G~I~lLhak-T~el--i~s~Ki-e----G~v 347 (514)
T KOG2055|consen 284 SYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG--------NNGHIHLLHAK-TKEL--ITSFKI-E----GVV 347 (514)
T ss_pred EeeccccccccccCCCCcccchhheeEecCCCCeEEEcc--------cCceEEeehhh-hhhh--hheeee-c----cEE
Confidence 999999888777542 1 2455678899999998776 34569998877 6654 222221 2 556
Q ss_pred cCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 301 TEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 301 ~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
..+.|+.||+.++.+.. ..++|++|+...........++.+..-... ... ++. ++.+....|...|
T Consensus 348 ~~~~fsSdsk~l~~~~~---~GeV~v~nl~~~~~~~rf~D~G~v~gts~~-------~S~---ng~-ylA~GS~~GiVNI 413 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGG---TGEVYVWNLRQNSCLHRFVDDGSVHGTSLC-------ISL---NGS-YLATGSDSGIVNI 413 (514)
T ss_pred eeEEEecCCcEEEEEcC---CceEEEEecCCcceEEEEeecCccceeeee-------ecC---CCc-eEEeccCcceEEE
Confidence 78999999994444432 348999999877554444333333222221 111 333 5555667888899
Q ss_pred EEEEC--CCCceEeeccC---CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 381 GILDD--FGHSLSLLDIP---FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 381 y~~d~--~~g~~~~lt~~---~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
|-.+. .++..+++..- -..|.++ ...+.++++++++.. +..+-++.+.
T Consensus 414 Yd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~-knalrLVHvP 467 (514)
T KOG2055|consen 414 YDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVK-KNALRLVHVP 467 (514)
T ss_pred eccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhcc-ccceEEEecc
Confidence 86542 33444555432 2346666 566677777776543 3334444433
No 183
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.65 E-value=6.7e-06 Score=77.27 Aligned_cols=202 Identities=9% Similarity=-0.001 Sum_probs=123.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEEC-CEEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFG-DTVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 166 (729)
+.+..+.+.. |++.|- .+++|...||-+..- ..+.++... .......+.+ +.-+++.+.+++
T Consensus 84 kNVtaVgF~~dgrWMyT----gseDgt~kIWdlR~~---~~qR~~~~~---------spVn~vvlhpnQteLis~dqsg~ 147 (311)
T KOG0315|consen 84 KNVTAVGFQCDGRWMYT----GSEDGTVKIWDLRSL---SCQRNYQHN---------SPVNTVVLHPNQTELISGDQSGN 147 (311)
T ss_pred CceEEEEEeecCeEEEe----cCCCceEEEEeccCc---ccchhccCC---------CCcceEEecCCcceEEeecCCCc
Confidence 4455555655 555543 236788888876543 122222111 0122333432 345677778899
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEe---ee---C
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVL---VS---G 239 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~l---t~---~ 239 (729)
|++||+... .-..+|.+++ ...+......|||+.++.+-.. ++.|++++-++.. ..| +. .
T Consensus 148 irvWDl~~~-~c~~~liPe~---~~~i~sl~v~~dgsml~a~nnk---------G~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 148 IRVWDLGEN-SCTHELIPED---DTSIQSLTVMPDGSMLAAANNK---------GNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred EEEEEccCC-ccccccCCCC---CcceeeEEEcCCCcEEEEecCC---------ccEEEEEccCCCccccceEhhheecc
Confidence 999999762 2455666553 3556888999999998877442 5688888776432 222 22 2
Q ss_pred CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC
Q 004816 240 SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN 319 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~ 319 (729)
.+......+|||+|+||-.+.+ ..+++++.+ +- +.-...+.+.. ..+-.-.||.||+.+++... +
T Consensus 215 ~~~il~C~lSPd~k~lat~ssd--------ktv~iwn~~-~~-~kle~~l~gh~----rWvWdc~FS~dg~YlvTass-d 279 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSD--------KTVKIWNTD-DF-FKLELVLTGHQ----RWVWDCAFSADGEYLVTASS-D 279 (311)
T ss_pred cceEEEEEECCCCcEEEeecCC--------ceEEEEecC-Cc-eeeEEEeecCC----ceEEeeeeccCccEEEecCC-C
Confidence 3445567899999999987733 347788776 33 32233455554 45567789999996666655 4
Q ss_pred CceEEEEEEcCCCeEEE
Q 004816 320 GFWNLHKWIESNNEVLA 336 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~ 336 (729)
+..+|| ++..++...
T Consensus 280 ~~~rlW--~~~~~k~v~ 294 (311)
T KOG0315|consen 280 HTARLW--DLSAGKEVR 294 (311)
T ss_pred Cceeec--ccccCceee
Confidence 556665 555555443
No 184
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.64 E-value=7.3e-08 Score=100.68 Aligned_cols=128 Identities=24% Similarity=0.269 Sum_probs=87.5
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCC---ccccchhhhHHHhhCC-cEEEEecCCCCCCCchhHHHhhc-
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSE---ARGILNLSIQYWTSRG-WAFVDVNYGGSTGYGREFRERLL- 544 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~---~~~~~~~~~~~la~~G-~~v~~~d~rGs~g~g~~~~~~~~- 544 (729)
..+..-+|.|.. +.++.||+|++|||.... ....| .-+.|+.+| ++|+.+|||-. -+|--......
T Consensus 78 DCL~LNIwaP~~------~a~~~PVmV~IHGG~y~~Gs~s~~~y--dgs~La~~g~vVvVSvNYRLG-~lGfL~~~~~~~ 148 (491)
T COG2272 78 DCLYLNIWAPEV------PAEKLPVMVYIHGGGYIMGSGSEPLY--DGSALAARGDVVVVSVNYRLG-ALGFLDLSSLDT 148 (491)
T ss_pred cceeEEeeccCC------CCCCCcEEEEEeccccccCCCccccc--ChHHHHhcCCEEEEEeCcccc-cceeeehhhccc
Confidence 346666788872 256789999999985322 12223 346788888 99999999952 12321111111
Q ss_pred --cCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHhCC---CcceEEEEeccccC
Q 004816 545 --GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALAFR---DTFKAGASLYGVAD 606 (729)
Q Consensus 545 --~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~~~---~~~~a~v~~~~~~d 606 (729)
..-...-+.|+..+++|+.++ ..-|++.|.|+|.|+|++.++.++..| ..|..+|+.+|...
T Consensus 149 ~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 149 EDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAVPSAKGLFHRAIALSGAAS 218 (491)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcCccchHHHHHHHHhCCCCC
Confidence 111112389999999999886 456999999999999999999888743 47888887777553
No 185
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.62 E-value=1.5e-07 Score=91.92 Aligned_cols=168 Identities=20% Similarity=0.211 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCCCCccccchh----hhHHHhhCCcEEEEecCCCCC--CCchh----------HHHhhccCCCcc----
Q 004816 491 KPPLLVKSHGGPTSEARGILNL----SIQYWTSRGWAFVDVNYGGST--GYGRE----------FRERLLGRWGIV---- 550 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~----~~~~la~~G~~v~~~d~rGs~--g~g~~----------~~~~~~~~~~~~---- 550 (729)
+.+-||++||.. ++...|.. +...|.+.++.++.+|-+-.. +.+-. ........|...
T Consensus 3 ~k~riLcLHG~~--~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 80 (212)
T PF03959_consen 3 RKPRILCLHGYG--QNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDD 80 (212)
T ss_dssp ---EEEEE--TT----HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-S
T ss_pred CCceEEEeCCCC--cCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCc
Confidence 357899999983 33343432 334444447888888844211 11110 111122223221
Q ss_pred -cHHHHHHHHHHHHh----CCCCCCCcEEEEEcChHHHHHHHHHh-----C----CCcceEEEEeccccChhHHhhhcch
Q 004816 551 -DVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA-----F----RDTFKAGASLYGVADLSMLRAETHK 616 (729)
Q Consensus 551 -~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~-----~----~~~~~a~v~~~~~~d~~~~~~~~~~ 616 (729)
...++..++++|.+ .+.. .+|+|+|.||.+|..++. . ...||.+|+.+++.-....
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPf----dGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~p~~~~------ 150 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPF----DGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFPPPDPD------ 150 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH-------SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES----EEE-------
T ss_pred ccccCHHHHHHHHHHHHHhcCCe----EEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccCCCchh------
Confidence 24555555555544 3433 589999999999987774 1 2358999999886532111
Q ss_pred hhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 617 FESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
........+|++|+|-++|.+|.+++++.+..+++..... .+++..++ ||.+..
T Consensus 151 ------------------~~~~~~~~~i~iPtlHv~G~~D~~~~~~~s~~L~~~~~~~---~~v~~h~g-GH~vP~ 204 (212)
T PF03959_consen 151 ------------------YQELYDEPKISIPTLHVIGENDPVVPPERSEALAEMFDPD---ARVIEHDG-GHHVPR 204 (212)
T ss_dssp ------------------GTTTT--TT---EEEEEEETT-SSS-HHHHHHHHHHHHHH---EEEEEESS-SSS---
T ss_pred ------------------hhhhhccccCCCCeEEEEeCCCCCcchHHHHHHHHhccCC---cEEEEECC-CCcCcC
Confidence 0001123467899999999999999999999999999863 57777765 787754
No 186
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.60 E-value=1.4e-06 Score=87.58 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=61.1
Q ss_pred CEEEEEcCCCCCCccccch-hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILN-LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~-~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
|.|+++||.+.....+... ......... |.|+.+|.||.+... .. ........+++...++.+ ...
T Consensus 22 ~~i~~~hg~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~g~g~s~----~~--~~~~~~~~~~~~~~~~~~------~~~ 88 (282)
T COG0596 22 PPLVLLHGFPGSSSVWRPVFKVLPALAAR-YRVIAPDLRGHGRSD----PA--GYSLSAYADDLAALLDAL------GLE 88 (282)
T ss_pred CeEEEeCCCCCchhhhHHHHHHhhccccc-eEEEEecccCCCCCC----cc--cccHHHHHHHHHHHHHHh------CCC
Confidence 4899999986554433331 111111223 999999999665443 00 000000023333333322 223
Q ss_pred cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 572 RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
++.++|||+||.+++.++. +|++++++|+..+.
T Consensus 89 ~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~ 122 (282)
T COG0596 89 KVVLVGHSMGGAVALALALRHPDRVRGLVLIGPA 122 (282)
T ss_pred ceEEEEecccHHHHHHHHHhcchhhheeeEecCC
Confidence 4999999999999999998 99999999988864
No 187
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=98.60 E-value=1.3e-06 Score=91.91 Aligned_cols=70 Identities=11% Similarity=0.027 Sum_probs=56.5
Q ss_pred cCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCC-CEEEEEECCCCcc--cCCcccHHHHHHHHHHHHHHH
Q 004816 641 VDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGL-PVALVEYEGEQHG--FRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 641 ~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~--~~~~~~~~~~~~~~~~fl~~~ 710 (729)
+++|+ +|+|.+.|++|.++|+.++..+.+.....+. +.+.++.+++||. |.......+.+..+.+|+.++
T Consensus 333 l~~I~~~pll~V~ge~D~I~p~~qt~aa~~l~~~~~s~~k~~~~~~~~GH~Gvf~G~r~~~~i~P~i~~wl~~~ 406 (406)
T TIGR01849 333 PGAITRVALLTVEGENDDISGLGQTKAALRLCTGIPEDMKRHHLQPGVGHYGVFSGSRFREEIYPLVREFIRRN 406 (406)
T ss_pred HHHCcccceEEEeccCCCcCCHHHhHHHHHHhhcCChhhceEeecCCCCeEEEeeChhhhhhhchHHHHHHHhC
Confidence 56788 9999999999999999999999988644332 4467788889996 556666778888999998763
No 188
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.58 E-value=3e-06 Score=84.88 Aligned_cols=201 Identities=11% Similarity=0.024 Sum_probs=119.0
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW 267 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~ 267 (729)
...+.-..||++|++|+-.+.+. ..-||.+..++. -.+.|...........||||.++|+-...++
T Consensus 224 tdEVWfl~FS~nGkyLAsaSkD~-------Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e----- 291 (519)
T KOG0293|consen 224 TDEVWFLQFSHNGKYLASASKDS-------TAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE----- 291 (519)
T ss_pred CCcEEEEEEcCCCeeEeeccCCc-------eEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH-----
Confidence 45567788999999988766544 245777766643 1234445556677789999999998776433
Q ss_pred CCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccC
Q 004816 268 DKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSR 346 (729)
Q Consensus 268 ~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~ 346 (729)
.+++.|++ +|.. +...+..- + .++...+|-|||. ++.-+.+ ..++.+|.++.....-. .+..
T Consensus 292 ---~~~lwDv~-tgd~--~~~y~~~~-~--~S~~sc~W~pDg~~~V~Gs~d----r~i~~wdlDgn~~~~W~----gvr~ 354 (519)
T KOG0293|consen 292 ---VLSLWDVD-TGDL--RHLYPSGL-G--FSVSSCAWCPDGFRFVTGSPD----RTIIMWDLDGNILGNWE----GVRD 354 (519)
T ss_pred ---heeeccCC-cchh--hhhcccCc-C--CCcceeEEccCCceeEecCCC----CcEEEecCCcchhhccc----cccc
Confidence 28888888 6765 33333321 1 5677889999998 5544333 56778888765422111 0001
Q ss_pred CcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEE
Q 004816 347 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 347 ~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
+-..++...+ ||+.++... .+ .++..++..+..-+-+-.....+.++ .+.++++++..-. +.++.+
T Consensus 355 ----~~v~dlait~---Dgk~vl~v~-~d--~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~---~qei~L 421 (519)
T KOG0293|consen 355 ----PKVHDLAITY---DGKYVLLVT-VD--KKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ---DQEIHL 421 (519)
T ss_pred ----ceeEEEEEcC---CCcEEEEEe-cc--cceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc---cCeeEE
Confidence 1122344443 666665544 23 34555566555544344445567766 3444555444432 346788
Q ss_pred EEcCCCc
Q 004816 426 VTLDDHK 432 (729)
Q Consensus 426 ~d~~~~~ 432 (729)
.|++...
T Consensus 422 WDl~e~~ 428 (519)
T KOG0293|consen 422 WDLEENK 428 (519)
T ss_pred eecchhh
Confidence 8887543
No 189
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.58 E-value=4.2e-08 Score=111.02 Aligned_cols=127 Identities=21% Similarity=0.214 Sum_probs=80.7
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc--cchhhhHHHhhCCcEEEEecCCCCCCCchhHH--Hhh-c
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR--ERL-L 544 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~--~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~--~~~-~ 544 (729)
..|..-+|.|.... ...+.||+|++|||....... ........++.++++||.+|||-+. +|--.. ... .
T Consensus 107 DCL~LnI~~P~~~~----~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~Gfl~~~~~~~~~ 181 (535)
T PF00135_consen 107 DCLYLNIYTPSNAS----SNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FGFLSLGDLDAPS 181 (535)
T ss_dssp ---EEEEEEETSSS----STTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HHH-BSSSTTSHB
T ss_pred hHHHHhhhhccccc----cccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cccccccccccCc
Confidence 46777888897733 233789999999986443333 2223345567889999999999421 111000 000 2
Q ss_pred cCCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccc
Q 004816 545 GRWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGV 604 (729)
Q Consensus 545 ~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~ 604 (729)
+++ -+.|...|++|+.++ -.-|+++|.|+|+|.||..+..++. ...+|+.+|+.+|.
T Consensus 182 gN~---Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 182 GNY---GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp STH---HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhh---hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 333 389999999999886 3469999999999999999977765 35689999999984
No 190
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.58 E-value=3.4e-06 Score=80.83 Aligned_cols=161 Identities=12% Similarity=0.138 Sum_probs=94.8
Q ss_pred ecceecCCCCEEEEEEecc---CCCCCCcceEEEEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 194 ADGIFDPRFNRYVTVREDR---RQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~---~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
....|+|+|+.|++..... ..........||.++..+.....+.- ..+.....+|||+|+++|.+....+
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~------ 82 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP------ 82 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCC------
Confidence 5677999999998876632 11111234679999888776666532 3335788999999999998863221
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcc
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 349 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 349 (729)
..+.++|++ ++. +..+.. .....+.|||+|++++++....-...|..+|.++.+..... +........|
T Consensus 83 ~~v~lyd~~--~~~--i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~W 151 (194)
T PF08662_consen 83 AKVTLYDVK--GKK--IFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF-EHSDATDVEW 151 (194)
T ss_pred cccEEEcCc--ccE--eEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc-ccCcEEEEEE
Confidence 247777775 222 222322 23356899999994444433122345777787754433222 2223344566
Q ss_pred cccCcceeeeeecCCCCEEEEEEEE-----CCeEEEEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQ-----NGRSYLGIL 383 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~-----~g~~~ly~~ 383 (729)
+| +|+.++..... +....||.+
T Consensus 152 sP------------dGr~~~ta~t~~r~~~dng~~Iw~~ 178 (194)
T PF08662_consen 152 SP------------DGRYLATATTSPRLRVDNGFKIWSF 178 (194)
T ss_pred cC------------CCCEEEEEEeccceeccccEEEEEe
Confidence 65 77777655442 334455544
No 191
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.56 E-value=1.7e-06 Score=97.74 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHH-Hh-------h--c---------cCCCcc
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFR-ER-------L--L---------GRWGIV 550 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~-~~-------~--~---------~~~~~~ 550 (729)
...|+||++||... ....|...++.|+++||.|+++|+||.|.....-. .. . + ++.-..
T Consensus 447 ~g~P~VVllHG~~g--~~~~~~~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ 524 (792)
T TIGR03502 447 DGWPVVIYQHGITG--AKENALAFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQ 524 (792)
T ss_pred CCCcEEEEeCCCCC--CHHHHHHHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHH
Confidence 34689999999733 33456778889999999999999998765422100 00 0 0 001122
Q ss_pred cHHHHHHHHHHHH------hC----CCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 551 DVNDCCSCATFLV------GS----GKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 551 ~~~D~~~~~~~l~------~~----~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
.+.|+......+. +. ...+..++.++||||||.++..++.
T Consensus 525 ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~ 574 (792)
T TIGR03502 525 SILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIA 574 (792)
T ss_pred HHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHH
Confidence 3677777777665 11 1256789999999999999998887
No 192
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.54 E-value=7.5e-06 Score=82.50 Aligned_cols=226 Identities=12% Similarity=0.011 Sum_probs=137.3
Q ss_pred CCceEEEEC-CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFG-DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~-~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+...|.|.. +.-+.+...++.+-+|++++. .....|+.. ..|+...+|.|+|++|.-.+-+.. --
T Consensus 221 ~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e-~~l~~l~gH----~~RVs~VafHPsG~~L~TasfD~t---------WR 286 (459)
T KOG0272|consen 221 GAAVFHPVDSDLNLATASADGTVKLWKLSQE-TPLQDLEGH----LARVSRVAFHPSGKFLGTASFDST---------WR 286 (459)
T ss_pred eeEEEccCCCccceeeeccCCceeeeccCCC-cchhhhhcc----hhhheeeeecCCCceeeecccccc---------hh
Confidence 344566552 333445556777777777651 234556655 578999999999999988776542 33
Q ss_pred EEEcCCCceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 225 AIALNGQNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
++|+.+++.-.+-.| .....+.+|.|||..++--+.|.- =.++|+. +|.. +..+.++- ..+..+
T Consensus 287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~--------~RvWDlR-tgr~--im~L~gH~----k~I~~V 351 (459)
T KOG0272|consen 287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSL--------GRVWDLR-TGRC--IMFLAGHI----KEILSV 351 (459)
T ss_pred hcccccchhhHhhcccccccceeEecCCCceeeccCccch--------hheeecc-cCcE--EEEecccc----cceeeE
Confidence 458888765444443 345677899999996654333221 2355777 6754 66677765 566789
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.|||+|..+.+... .+..+|| |+......-+. |.-+.....+.|.| ..+.++++..-|+..+||.-
T Consensus 352 ~fsPNGy~lATgs~-Dnt~kVW--DLR~r~~ly~i--------pAH~nlVS~Vk~~p---~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 352 AFSPNGYHLATGSS-DNTCKVW--DLRMRSELYTI--------PAHSNLVSQVKYSP---QEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred eECCCceEEeecCC-CCcEEEe--eecccccceec--------ccccchhhheEecc---cCCeEEEEcccCcceeeecC
Confidence 99999973333333 3555665 44333222111 22222233444443 56788888888999999853
Q ss_pred ECCCCceEeeccCCcceEEe-eeeCCEEEEEEe
Q 004816 384 DDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGA 415 (729)
Q Consensus 384 d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 415 (729)
.....++.|......|.++ ...++..++.++
T Consensus 418 -~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 418 -RTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred -CCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 2334466777777778777 334444444443
No 193
>PTZ00420 coronin; Provisional
Probab=98.53 E-value=2.1e-05 Score=86.94 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=118.2
Q ss_pred ceEEEE--CCEEEEEECCCCcEEEEeCCCCCCC-Ce-------ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCC
Q 004816 148 GAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSS-PL-------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDAL 217 (729)
Q Consensus 148 ~~~~~~--~~~i~~~~~~~~~l~~~d~~~~~~~-~~-------~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~ 217 (729)
..+.++ .+.++++...++.|.+|++.++ +. .. .+... ...+...+|+|++..++++...+
T Consensus 78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~-~~~~~~i~~p~~~L~gH----~~~V~sVaf~P~g~~iLaSgS~D----- 147 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSEDLTIRVWEIPHN-DESVKEIKDPQCILKGH----KKKISIIDWNPMNYYIMCSSGFD----- 147 (568)
T ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCC-CccccccccceEEeecC----CCcEEEEEECCCCCeEEEEEeCC-----
Confidence 334444 3467777778889999998751 21 11 12222 34578889999999876654432
Q ss_pred CcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 218 NSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 218 ~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
..|.++|+.+++...............|+|||+.|+... ....|.++|+. +++. +..+.++.
T Consensus 148 ---gtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s--------~D~~IrIwD~R-sg~~--i~tl~gH~---- 209 (568)
T PTZ00420 148 ---SFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC--------VGKHMHIIDPR-KQEI--ASSFHIHD---- 209 (568)
T ss_pred ---CeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe--------cCCEEEEEECC-CCcE--EEEEeccc----
Confidence 468889998876543223344567889999999887554 12459999998 6654 33344443
Q ss_pred ccc-cCc----eeCCCCc-EEEEEecCCCceEEEEEEcCC-CeEEEeeccCcccc--CCcccccCcceeeeeecCCCCEE
Q 004816 298 ESP-TEP----KWSSKGE-LFFVTDRKNGFWNLHKWIESN-NEVLAIYSLDAEFS--RPLWVFGINSYEIIQSHGEKNLI 368 (729)
Q Consensus 298 ~~~-~~~----~wspDG~-l~~~~~~~~g~~~l~~~d~~~-g~~~~l~~~~~~~~--~~~w~~~~~~~~~l~~~~~~~~l 368 (729)
... ... .|++|++ |+-..........|.++|+.. ++.......+...+ .|.|.+ +.+.+
T Consensus 210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~------------~tg~l 277 (568)
T PTZ00420 210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDE------------STGLI 277 (568)
T ss_pred CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeC------------CCCCE
Confidence 111 122 2458887 444443312334688888774 33332222221111 123332 45666
Q ss_pred EEEEEECCeEEEEEEECCCCceEeec
Q 004816 369 ACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 369 ~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
|++...++..++|-+ ..+....|.
T Consensus 278 ~lsGkGD~tIr~~e~--~~~~~~~l~ 301 (568)
T PTZ00420 278 YLIGKGDGNCRYYQH--SLGSIRKVN 301 (568)
T ss_pred EEEEECCCeEEEEEc--cCCcEEeec
Confidence 766666676666654 445555554
No 194
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=98.52 E-value=2.1e-05 Score=80.40 Aligned_cols=230 Identities=11% Similarity=0.075 Sum_probs=127.6
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|....+.++|++-..++|+.++..+ ++.+..... ...........+|. | ++++ ..+++++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~--g~~~~~~~p----~~~~~~~~~d~~g~-L-v~~~----------~g~~~~~~ 92 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPET--GKKRVFPSP----GGFSSGALIDAGGR-L-IACE----------HGVRLLDP 92 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCc--CceEEEECC----CCcccceeecCCCe-E-EEEc----------cccEEEec
Confidence 45555567899988888999999986 655554443 12223334555554 3 3333 34777787
Q ss_pred CCCce-EEeeeCC-----CeeeeeeeCCCCCeEEEEEec-----CCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 229 NGQNI-QVLVSGS-----DFYAFPRMDPRGERMAWIEWH-----HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 229 ~~g~~-~~lt~~~-----~~~~~~~~SPDG~~la~~~~~-----~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
+.+.. +.++... ...+.....|||+ ++|.... .... -....||.+|.. |.. +++..+.-
T Consensus 93 ~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~-~wfgt~~~~~~~~~~~-~~~G~lyr~~p~--g~~--~~l~~~~~---- 162 (307)
T COG3386 93 DTGGKITLLAEPEDGLPLNRPNDGVVDPDGR-IWFGDMGYFDLGKSEE-RPTGSLYRVDPD--GGV--VRLLDDDL---- 162 (307)
T ss_pred cCCceeEEeccccCCCCcCCCCceeEcCCCC-EEEeCCCccccCcccc-CCcceEEEEcCC--CCE--EEeecCcE----
Confidence 76666 4444321 2334567899998 6666644 2211 123368888864 333 34444421
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCC--Ce---EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEE
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN--NE---VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~--g~---~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
.....++|||||+.+|.++. ....|++++.+. +. .+.......+.+.|... .. |.+..+|.+
T Consensus 163 ~~~NGla~SpDg~tly~aDT--~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~------~v-----DadG~lw~~ 229 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADT--PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGM------AV-----DADGNLWVA 229 (307)
T ss_pred EecCceEECCCCCEEEEEeC--CCCeEEEEecCcccCccCCcceEEEccCCCCCCCce------EE-----eCCCCEEEe
Confidence 34468999999995555554 345677776642 21 11111111122333322 22 333344434
Q ss_pred EECCeEEEEEEECCCCceEeeccCCcceEEe---eeeCCEEEEEEeCCCC
Q 004816 373 RQNGRSYLGILDDFGHSLSLLDIPFTDIDNI---TLGNDCLFVEGASGVE 419 (729)
Q Consensus 373 ~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~---~~~~~~~~~~~~~~~~ 419 (729)
...+...|-++++++..+..+..+...+... -.+.+.+++.++..+.
T Consensus 230 a~~~g~~v~~~~pdG~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~~~ 279 (307)
T COG3386 230 AVWGGGRVVRFNPDGKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARSGM 279 (307)
T ss_pred cccCCceEEEECCCCcEEEEEECCCCCCccceEeCCCcCEEEEEecCCCC
Confidence 4444457888899977777777775444444 2334666666655543
No 195
>PTZ00421 coronin; Provisional
Probab=98.52 E-value=9.5e-05 Score=81.21 Aligned_cols=119 Identities=15% Similarity=0.190 Sum_probs=76.2
Q ss_pred eeeecceecC-CCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--------eEEeeeCCCeeeeeeeCCCCCeEEEEEec
Q 004816 191 VSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQN--------IQVLVSGSDFYAFPRMDPRGERMAWIEWH 261 (729)
Q Consensus 191 ~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--------~~~lt~~~~~~~~~~~SPDG~~la~~~~~ 261 (729)
..+.++.|+| |++.|+....+ ..|.++++.++. ...|...........|+|++..++.....
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~D---------gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~ 146 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASED---------GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGA 146 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCC---------CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeC
Confidence 4578899999 88876655543 357778876542 22333334456678999987544434322
Q ss_pred CCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 262 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 262 ~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
...|.++|+. +++. ...+.+.. ..+..+.|+|||+++++... .+ .|.++|+.+++..
T Consensus 147 -------DgtVrIWDl~-tg~~--~~~l~~h~----~~V~sla~spdG~lLatgs~-Dg--~IrIwD~rsg~~v 203 (493)
T PTZ00421 147 -------DMVVNVWDVE-RGKA--VEVIKCHS----DQITSLEWNLDGSLLCTTSK-DK--KLNIIDPRDGTIV 203 (493)
T ss_pred -------CCEEEEEECC-CCeE--EEEEcCCC----CceEEEEEECCCCEEEEecC-CC--EEEEEECCCCcEE
Confidence 2458899998 6654 44455554 55678899999995555544 34 4666788777643
No 196
>PRK04940 hypothetical protein; Provisional
Probab=98.52 E-value=2.8e-06 Score=78.24 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=73.8
Q ss_pred CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCC--
Q 004816 571 KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCP-- 647 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~P-- 647 (729)
++++|+|.|+|||.|.+++. +. + .+|+++|...........-.....|. .+ .++...+. + ++.|
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~-~aVLiNPAv~P~~~L~~~ig~~~~y~-~~--~~~h~~eL------~-~~~p~r 126 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--I-RQVIFNPNLFPEENMEGKIDRPEEYA-DI--ATKCVTNF------R-EKNRDR 126 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--C-CEEEECCCCChHHHHHHHhCCCcchh-hh--hHHHHHHh------h-hcCccc
Confidence 46999999999999999998 54 2 36777887765432111000000011 00 11111111 1 2333
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
.+++..+.|.+.++.++.+.++.. .+..+.+|++|.|.. .++.+..|++|+.
T Consensus 127 ~~vllq~gDEvLDyr~a~~~y~~~------y~~~v~~GGdH~f~~---fe~~l~~I~~F~~ 178 (180)
T PRK04940 127 CLVILSRNDEVLDSQRTAEELHPY------YEIVWDEEQTHKFKN---ISPHLQRIKAFKT 178 (180)
T ss_pred EEEEEeCCCcccCHHHHHHHhccC------ceEEEECCCCCCCCC---HHHHHHHHHHHHh
Confidence 689999999999998777666432 147889999999864 5678888999984
No 197
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.51 E-value=6e-07 Score=95.41 Aligned_cols=111 Identities=8% Similarity=-0.016 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCCCCCccccchh-hhHHHhh--CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEARGILNL-SIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~-~~~~la~--~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
..|++|++||.........|.. +...|.. ..|+|+++|++|.+... +..+. ..-....+++...+++|.+...
T Consensus 40 ~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~--~~t~~vg~~la~lI~~L~~~~g 115 (442)
T TIGR03230 40 ETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQH--YPTSA--AYTKLVGKDVAKFVNWMQEEFN 115 (442)
T ss_pred CCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCC--Ccccc--ccHHHHHHHHHHHHHHHHHhhC
Confidence 3588999999754322223332 4444432 36999999999754321 11111 0111224667888888876544
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
++.+++.|+|||+||++|..++. ++.++..++.+.|..
T Consensus 116 l~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPAg 154 (442)
T TIGR03230 116 YPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPAG 154 (442)
T ss_pred CCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCCC
Confidence 67789999999999999999888 888999999998853
No 198
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.50 E-value=6.7e-06 Score=76.82 Aligned_cols=122 Identities=16% Similarity=0.177 Sum_probs=90.4
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh--C-------CCcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 555 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA--F-------RDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 555 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~--~-------~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
+..+.+|+.+++..| ||+|+|.|+.++..+++ . -+.|+-+|.++|+.-.....
T Consensus 92 l~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~~kF~v~~SGf~~~~~~~-------------- 153 (230)
T KOG2551|consen 92 LEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPPFKFAVFISGFKFPSKKL-------------- 153 (230)
T ss_pred HHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCCeEEEEEEecCCCCcchh--------------
Confidence 566677888888888 79999999999987775 1 12578889988875432100
Q ss_pred cCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHH
Q 004816 626 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMV 705 (729)
Q Consensus 626 ~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~ 705 (729)
.-..+...+++|.|-+.|+.|.++|...+..+++....+ .++.- .+||.+.+. ....+.+.+
T Consensus 154 ----------~~~~~~~~i~~PSLHi~G~~D~iv~~~~s~~L~~~~~~a----~vl~H-pggH~VP~~---~~~~~~i~~ 215 (230)
T KOG2551|consen 154 ----------DESAYKRPLSTPSLHIFGETDTIVPSERSEQLAESFKDA----TVLEH-PGGHIVPNK---AKYKEKIAD 215 (230)
T ss_pred ----------hhhhhccCCCCCeeEEecccceeecchHHHHHHHhcCCC----eEEec-CCCccCCCc---hHHHHHHHH
Confidence 001234467899999999999999999999999999864 44444 468987653 367788889
Q ss_pred HHHHHhC
Q 004816 706 FFARVVG 712 (729)
Q Consensus 706 fl~~~l~ 712 (729)
|+...+.
T Consensus 216 fi~~~~~ 222 (230)
T KOG2551|consen 216 FIQSFLQ 222 (230)
T ss_pred HHHHHHH
Confidence 9888775
No 199
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.49 E-value=8.8e-05 Score=76.89 Aligned_cols=129 Identities=9% Similarity=-0.071 Sum_probs=76.9
Q ss_pred CCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC--CCcEEEEEEec
Q 004816 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW--DKAELWVGYIS 278 (729)
Q Consensus 201 dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~--~~~~l~~~d~~ 278 (729)
|+++ +|+.+..... ..+.|+++|.++++.....+....-.+ ..||||+.||....-.+...+ ....|-++|++
T Consensus 11 ~~~~-v~V~d~~~~~---~~~~v~ViD~~~~~v~g~i~~G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~ 85 (352)
T TIGR02658 11 DARR-VYVLDPGHFA---ATTQVYTIDGEAGRVLGMTDGGFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ 85 (352)
T ss_pred CCCE-EEEECCcccc---cCceEEEEECCCCEEEEEEEccCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence 5565 6676543100 026799999999876543332222233 499999999877641111111 23458999998
Q ss_pred CCCCeeeeEEecCCCC-CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 279 ENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 279 ~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
+.+......+..... ...........||||+.+|+.+. .....+-++|+++++...
T Consensus 86 -t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~-~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 86 -THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQF-SPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred -cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecC-CCCCEEEEEECCCCcEEE
Confidence 676543333322210 00023346789999996667665 456778899999887654
No 200
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.47 E-value=3.7e-06 Score=84.28 Aligned_cols=198 Identities=12% Similarity=0.030 Sum_probs=112.9
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC--CeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+.-..||||.++|+....+ ..+.++|.++|+.+.+.+.. ......+|-|||.+++.-+.+
T Consensus 270 ~~V~yi~wSPDdryLlaCg~~---------e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~d------- 333 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGFD---------EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPD------- 333 (519)
T ss_pred CceEEEEECCCCCeEEecCch---------HheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCC-------
Confidence 456778899999998766433 24888999999887765433 345678999999997644422
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 347 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~ 347 (729)
..++.+|++ |.. ...-.+.. . .-+..++.++||+ ++.+..+ ..|..++.++...+.+..++..+..
T Consensus 334 -r~i~~wdlD--gn~--~~~W~gvr-~--~~v~dlait~Dgk~vl~v~~d----~~i~l~~~e~~~dr~lise~~~its- 400 (519)
T KOG0293|consen 334 -RTIIMWDLD--GNI--LGNWEGVR-D--PKVHDLAITYDGKYVLLVTVD----KKIRLYNREARVDRGLISEEQPITS- 400 (519)
T ss_pred -CcEEEecCC--cch--hhcccccc-c--ceeEEEEEcCCCcEEEEEecc----cceeeechhhhhhhccccccCceeE-
Confidence 348888887 332 11111110 0 2345678899999 5544433 3466666666555545444423322
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec---cCCcceEEeeeeCC-EEEEEEeCCCCCceE
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD---IPFTDIDNITLGND-CLFVEGASGVEPSSV 423 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt---~~~~~v~~~~~~~~-~~~~~~~~~~~~~~l 423 (729)
+... ++++++...-.+...+||-+. +...+++.. .+..-+.+.....+ .++..++. ...+
T Consensus 401 --------~~iS----~d~k~~LvnL~~qei~LWDl~-e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSE---D~kv 464 (519)
T KOG0293|consen 401 --------FSIS----KDGKLALVNLQDQEIHLWDLE-ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSE---DSKV 464 (519)
T ss_pred --------EEEc----CCCcEEEEEcccCeeEEeecc-hhhHHHHhhcccccceEEEeccCCCCcceEEecCC---CceE
Confidence 2332 555666666556666777443 222222222 12223444333333 44444333 3578
Q ss_pred EEEEcCCCcc
Q 004816 424 AKVTLDDHKL 433 (729)
Q Consensus 424 y~~d~~~~~~ 433 (729)
|..+..+|++
T Consensus 465 yIWhr~sgkl 474 (519)
T KOG0293|consen 465 YIWHRISGKL 474 (519)
T ss_pred EEEEccCCce
Confidence 9999888875
No 201
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=98.46 E-value=6.6e-06 Score=84.76 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=113.8
Q ss_pred EEEEc-CCCCCCCCCCCCCCCEEEEEcCCCCCCcccc--ch---hhhHHHhhCCcEEEEecCCCCC--CCchhHHHhhcc
Q 004816 474 AYYYP-PSNPIYQASPEEKPPLLVKSHGGPTSEARGI--LN---LSIQYWTSRGWAFVDVNYGGST--GYGREFRERLLG 545 (729)
Q Consensus 474 ~~l~~-P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~--~~---~~~~~la~~G~~v~~~d~rGs~--g~g~~~~~~~~~ 545 (729)
.|+.+ |...+ .+.-|+|+++|||+-...... +. .....+ . ...++++||.... .+|..+
T Consensus 108 ~Wlvk~P~~~~-----pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l-~-~~SILvLDYsLt~~~~~~~~y------ 174 (374)
T PF10340_consen 108 YWLVKAPNRFK-----PKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLL-P-EVSILVLDYSLTSSDEHGHKY------ 174 (374)
T ss_pred EEEEeCCcccC-----CCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHc-C-CCeEEEEeccccccccCCCcC------
Confidence 36676 64422 233599999999853322211 11 112222 2 5699999997543 122221
Q ss_pred CCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh---C---CCcceEEEEeccccChhHHhhhc-----
Q 004816 546 RWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA---F---RDTFKAGASLYGVADLSMLRAET----- 614 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~---~---~~~~~a~v~~~~~~d~~~~~~~~----- 614 (729)
..+..++.+..++|.+.. ..++|.+||-|+||.+++.++. + ...-+.+|+++|..++.......
T Consensus 175 ---PtQL~qlv~~Y~~Lv~~~--G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~~~~~~~~~~~~ 249 (374)
T PF10340_consen 175 ---PTQLRQLVATYDYLVESE--GNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLVPQDSQEGSSYH 249 (374)
T ss_pred ---chHHHHHHHHHHHHHhcc--CCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCcCCCCCCCcccc
Confidence 134788999999999442 2478999999999999988875 2 12358999999988775211100
Q ss_pred -----chhh----hhhhhhhcCC--hhhhhhcCccc---------ccCCC--CCCEEEEEeCCCCCCChHHHHHHHHHHH
Q 004816 615 -----HKFE----SRYIDNLVGS--EKDYYEKSPIN---------FVDKF--SCPIILFQGLEDKVVPPDQARKIYKALK 672 (729)
Q Consensus 615 -----~~~~----~~~~~~~~~~--~~~~~~~sp~~---------~~~~i--~~PvL~i~G~~D~~vp~~~~~~~~~~l~ 672 (729)
+... ..+.....++ .+......|.. ..+.| +.-++++.|+++-. ..+.+++.+.+.
T Consensus 250 ~n~~~D~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~n~~~n~d~~~W~~I~~~~~vfVi~Ge~Evf--rddI~~~~~~~~ 327 (374)
T PF10340_consen 250 DNEKRDMLSYKGLSMFGDAYIGNNDPENDLNSLPFVNIEYNFDAEDWKDILKKYSVFVIYGEDEVF--RDDILEWAKKLN 327 (374)
T ss_pred ccccccccchhhHHHHHHhhccccccccccccCCccCcccCCChhHHHHhccCCcEEEEECCcccc--HHHHHHHHHHHh
Confidence 0000 0111111111 11111111111 11111 25799999998744 578899999998
Q ss_pred hCCC-----CEEEEEECCCCcc
Q 004816 673 ENGL-----PVALVEYEGEQHG 689 (729)
Q Consensus 673 ~~g~-----~~~~~~~~~~gH~ 689 (729)
..+. ..++.+-+++.|.
T Consensus 328 ~~~~~~~~~~~nv~~~~~G~Hi 349 (374)
T PF10340_consen 328 DVKPNKFSNSNNVYIDEGGIHI 349 (374)
T ss_pred hcCccccCCcceEEEecCCccc
Confidence 6543 3577788888885
No 202
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.46 E-value=4e-05 Score=84.18 Aligned_cols=231 Identities=12% Similarity=0.083 Sum_probs=134.9
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCC---CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSS---PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~---~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.++..+ .....++.+.++++.+ .. .+.+.. ....+.+.+|||||+.++-...+ ..|.++|+
T Consensus 169 ~~g~~l-~~~~~~~~i~~~~~~~--~~~~~~~~l~~----h~~~v~~~~fs~d~~~l~s~s~D---------~tiriwd~ 232 (456)
T KOG0266|consen 169 PDGRAL-AAASSDGLIRIWKLEG--IKSNLLRELSG----HTRGVSDVAFSPDGSYLLSGSDD---------KTLRIWDL 232 (456)
T ss_pred CCCCeE-EEccCCCcEEEeeccc--ccchhhccccc----cccceeeeEECCCCcEEEEecCC---------ceEEEeec
Confidence 334443 3333455667777654 33 222222 24567899999999977666554 46888888
Q ss_pred -CCCce-EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 229 -NGQNI-QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 229 -~~g~~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.+.. +.+..........+|+|+|+.|+-.+.| ..+.++|+. +|+. ...+.++. ..+...+++
T Consensus 233 ~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D--------~tvriWd~~-~~~~--~~~l~~hs----~~is~~~f~ 297 (456)
T KOG0266|consen 233 KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDD--------GTVRIWDVR-TGEC--VRKLKGHS----DGISGLAFS 297 (456)
T ss_pred cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCC--------CcEEEEecc-CCeE--EEeeeccC----CceEEEEEC
Confidence 44444 4454445667889999999766655532 348888988 6766 56777776 667788999
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEE---EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
+||+++..... . ..|.++|..++..+ .+.... ... +. ....|.+ ++ .++++...++...+|-+
T Consensus 298 ~d~~~l~s~s~-d--~~i~vwd~~~~~~~~~~~~~~~~-~~~-~~-----~~~~fsp---~~-~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 298 PDGNLLVSASY-D--GTIRVWDLETGSKLCLKLLSGAE-NSA-PV-----TSVQFSP---NG-KYLLSASLDRTLKLWDL 363 (456)
T ss_pred CCCCEEEEcCC-C--ccEEEEECCCCceeeeecccCCC-CCC-ce-----eEEEECC---CC-cEEEEecCCCeEEEEEc
Confidence 99995555543 3 45667788888743 222211 110 12 1234442 44 45555556666667654
Q ss_pred ECCCCc-eEeeccCCcceEEe----eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 384 DDFGHS-LSLLDIPFTDIDNI----TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 384 d~~~g~-~~~lt~~~~~v~~~----~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
..+. ....+.....+..+ ...++.+++..+.. ..++.+++.++.
T Consensus 364 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d---~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 364 --RSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSED---GSVYVWDSSSGG 412 (456)
T ss_pred --cCCcceeeecccCCcceeEecccccCCCCeEEEEeCC---ceEEEEeCCccc
Confidence 3333 33333332222222 34455666655543 357788877654
No 203
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.42 E-value=0.00022 Score=68.13 Aligned_cols=194 Identities=13% Similarity=0.132 Sum_probs=118.0
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.++.+-..+..|.+++..++ ....-.+..++.....+...+|||.|+.|+..+-+. ...++.-..++-+.
T Consensus 28 ~ilAscg~Dk~vriw~~~~~-~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~---------t~~Iw~k~~~efec 97 (312)
T KOG0645|consen 28 VILASCGTDKAVRIWSTSSG-DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA---------TVVIWKKEDGEFEC 97 (312)
T ss_pred eEEEeecCCceEEEEecCCC-CcEEEEEeccccchheeeeeeecCCCcEEEEeeccc---------eEEEeecCCCceeE
Confidence 36666666667878877631 222222222222345678899999999887766543 33444444455444
Q ss_pred ee--eCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 236 LV--SGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 236 lt--~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
+. +|. ...-..+||++|++||-.+.+ ..+|++.++++++..-..++.++- +.+-.+.|.|-..|+
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRD--------KSVWiWe~deddEfec~aVL~~Ht----qDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRD--------KSVWIWEIDEDDEFECIAVLQEHT----QDVKHVIWHPTEDLL 165 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCC--------CeEEEEEecCCCcEEEEeeecccc----ccccEEEEcCCccee
Confidence 43 333 345578999999999988843 348888877556665566666665 567788999975688
Q ss_pred EEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 313 FVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
|.... .+.-.+|+-+. ++....+...+. ...-.|+. .|.+ .+.++ .+..+++...||++
T Consensus 166 ~S~SY-DnTIk~~~~~~-dddW~c~~tl~g-~~~TVW~~-----~F~~---~G~rl-~s~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 166 FSCSY-DNTIKVYRDED-DDDWECVQTLDG-HENTVWSL-----AFDN---IGSRL-VSCSDDGTVSIWRL 224 (312)
T ss_pred EEecc-CCeEEEEeecC-CCCeeEEEEecC-ccceEEEE-----EecC---CCceE-EEecCCcceEeeee
Confidence 88877 66677887654 443332222111 11346654 3432 34444 45556788888873
No 204
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=98.39 E-value=2.9e-05 Score=80.23 Aligned_cols=164 Identities=16% Similarity=0.196 Sum_probs=100.9
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCC--CcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhh-----
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADE--KRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFE----- 618 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~--~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~----- 618 (729)
+|.-.+.|+..|+.++.+.-.-.. -++.++|+|+|||+|..++. .|-.|.+++-.++..-...-.-......
T Consensus 158 ~GIMqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~p~l~~I~Gre~~~~~y~ 237 (403)
T PF11144_consen 158 FGIMQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYALPPLRYIFGREIDFMKYI 237 (403)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCccccchhheeeeeecCccccc
Confidence 444457888888888888733222 48999999999999999998 8999999987776543211100000000
Q ss_pred ----h---------hhhhhhcC---------ChhhhhhcCccc--c---cCCC-CCC-EEEEEeCCCCCCChHHHHHHHH
Q 004816 619 ----S---------RYIDNLVG---------SEKDYYEKSPIN--F---VDKF-SCP-IILFQGLEDKVVPPDQARKIYK 669 (729)
Q Consensus 619 ----~---------~~~~~~~~---------~~~~~~~~sp~~--~---~~~i-~~P-vL~i~G~~D~~vp~~~~~~~~~ 669 (729)
. .+....|. ..+.+.-++.+. | .++. +.| ...+|+..|..+|+++-.++++
T Consensus 238 ~~~~~~~~~~~~i~~~~Kt~Wt~n~~S~~~Fs~~~~~IR~iLn~~HL~iqs~~n~~~~yvsYHs~~D~~~p~~~K~~l~~ 317 (403)
T PF11144_consen 238 CSGEFFNFKNIRIYCFDKTFWTRNKNSPYYFSKARYIIRSILNPDHLKIQSNYNKKIIYVSYHSIKDDLAPAEDKEELYE 317 (403)
T ss_pred ccccccccCCEEEEEEeccccccCCCCccccChHHHHHHHhcChHHHHHHHhcccceEEEEEeccCCCCCCHHHHHHHHH
Confidence 0 00000110 111111111111 1 1112 334 5667999999999999999999
Q ss_pred HHHhCCCCEEEEEECCC-----------CcccCCcccHHHHHHHHHHHHHHHhC
Q 004816 670 ALKENGLPVALVEYEGE-----------QHGFRKAENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 670 ~l~~~g~~~~~~~~~~~-----------gH~~~~~~~~~~~~~~~~~fl~~~l~ 712 (729)
.++..|-+++++.+.++ .|++.. .....+...+.-+.+.+.
T Consensus 318 ~l~~lgfda~l~lIkdes~iDGkfIKnl~HGmgi--s~k~Lf~KeLp~~lek~~ 369 (403)
T PF11144_consen 318 ILKNLGFDATLHLIKDESEIDGKFIKNLEHGMGI--SDKALFKKELPLMLEKLQ 369 (403)
T ss_pred HHHHcCCCeEEEEecChhhccchheeccccCCCC--CHHHHHHHHhHHHHHHhh
Confidence 99999999999999543 576543 234555555665555554
No 205
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.36 E-value=0.00028 Score=70.63 Aligned_cols=229 Identities=15% Similarity=0.075 Sum_probs=126.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
.++|..--..-++++|..+ ++. ..+...+ + ...+...+|||||++|+ +.+++.+. ....|-++|.. ...+
T Consensus 19 avafaRRPG~~~~v~D~~~--g~~~~~~~a~~-g-RHFyGHg~fs~dG~~Ly-tTEnd~~~---g~G~IgVyd~~-~~~~ 89 (305)
T PF07433_consen 19 AVAFARRPGTFALVFDCRT--GQLLQRLWAPP-G-RHFYGHGVFSPDGRLLY-TTENDYET---GRGVIGVYDAA-RGYR 89 (305)
T ss_pred EEEEEeCCCcEEEEEEcCC--CceeeEEcCCC-C-CEEecCEEEcCCCCEEE-EeccccCC---CcEEEEEEECc-CCcE
Confidence 4555543344789999988 544 4555442 1 24557889999999755 44443222 25778889988 3344
Q ss_pred EeeeCCCeee---eeeeCCCCCeEEEEEec---CC-----CCCCC--CcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 235 VLVSGSDFYA---FPRMDPRGERMAWIEWH---HP-----NMPWD--KAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 235 ~lt~~~~~~~---~~~~SPDG~~la~~~~~---~~-----~~~~~--~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++.+-...-. ...|.|||+.|+...-. ++ ..+-+ ...|-.+|.. +|++.....++..... .++.
T Consensus 90 ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~-sG~ll~q~~Lp~~~~~--lSiR 166 (305)
T PF07433_consen 90 RIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDAR-SGALLEQVELPPDLHQ--LSIR 166 (305)
T ss_pred EEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecC-CCceeeeeecCccccc--ccee
Confidence 4433221112 24799999999876521 11 01001 2346677777 7886444444332212 6788
Q ss_pred CceeCCCCcEEEEEecCCCce----E-EEEEEcCCCeEEEeeccCccccCCcccc---cCcceeeeeecCCCCEEEEEEE
Q 004816 302 EPKWSSKGELFFVTDRKNGFW----N-LHKWIESNNEVLAIYSLDAEFSRPLWVF---GINSYEIIQSHGEKNLIACSYR 373 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~----~-l~~~d~~~g~~~~l~~~~~~~~~~~w~~---~~~~~~~l~~~~~~~~l~~~s~ 373 (729)
.++|.+||.++|..+. +|.. - |.+.+ .++...+...+ ...|.. -.-++.+.. +++.+.+++-
T Consensus 167 HLa~~~~G~V~~a~Q~-qg~~~~~~PLva~~~--~g~~~~~~~~p----~~~~~~l~~Y~gSIa~~~---~g~~ia~tsP 236 (305)
T PF07433_consen 167 HLAVDGDGTVAFAMQY-QGDPGDAPPLVALHR--RGGALRLLPAP----EEQWRRLNGYIGSIAADR---DGRLIAVTSP 236 (305)
T ss_pred eEEecCCCcEEEEEec-CCCCCccCCeEEEEc--CCCcceeccCC----hHHHHhhCCceEEEEEeC---CCCEEEEECC
Confidence 9999999997777666 4431 1 33433 23323333221 112221 112445543 5667777777
Q ss_pred ECCeEEEEEEECCCCceEeeccCCcceEEeeeeCCE
Q 004816 374 QNGRSYLGILDDFGHSLSLLDIPFTDIDNITLGNDC 409 (729)
Q Consensus 374 ~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~ 409 (729)
+.+...+| |..+|++..... ..++..+...++.
T Consensus 237 rGg~~~~~--d~~tg~~~~~~~-l~D~cGva~~~~~ 269 (305)
T PF07433_consen 237 RGGRVAVW--DAATGRLLGSVP-LPDACGVAPTDDG 269 (305)
T ss_pred CCCEEEEE--ECCCCCEeeccc-cCceeeeeecCCc
Confidence 77766666 777887654432 3344555333333
No 206
>PTZ00421 coronin; Provisional
Probab=98.35 E-value=6.7e-05 Score=82.40 Aligned_cols=151 Identities=9% Similarity=0.087 Sum_probs=93.1
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCC-------CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSS-------PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~-------~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
+.++++...++.|.+|++.++ +. ...+... ...+....|+|++..++++...+ ..|.++|
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~-~~~~~~~~~l~~L~gH----~~~V~~l~f~P~~~~iLaSgs~D--------gtVrIWD 154 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEE-GLTQNISDPIVHLQGH----TKKVGIVSFHPSAMNVLASAGAD--------MVVNVWD 154 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCC-ccccccCcceEEecCC----CCcEEEEEeCcCCCCEEEEEeCC--------CEEEEEE
Confidence 456677777889999998751 21 1223322 34567889999875445544332 4688999
Q ss_pred cCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.+++..... .........+|+|||+.|+..+. ...|.++|+. +++. +..+.... . .......|.
T Consensus 155 l~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~--------Dg~IrIwD~r-sg~~--v~tl~~H~-~--~~~~~~~w~ 220 (493)
T PTZ00421 155 VERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSK--------DKKLNIIDPR-DGTI--VSSVEAHA-S--AKSQRCLWA 220 (493)
T ss_pred CCCCeEEEEEcCCCCceEEEEEECCCCEEEEecC--------CCEEEEEECC-CCcE--EEEEecCC-C--CcceEEEEc
Confidence 9987654433 34456778899999998876552 3458999988 6654 32333332 0 122457899
Q ss_pred CCCc-EEEEEecCCCceEEEEEEcCCC
Q 004816 307 SKGE-LFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 307 pDG~-l~~~~~~~~g~~~l~~~d~~~g 332 (729)
+++. ++...........|.++|+...
T Consensus 221 ~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 221 KRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred CCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 9877 4433322122345777787653
No 207
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.35 E-value=4.7e-05 Score=75.87 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=85.0
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce--
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-- 233 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-- 233 (729)
.+.+...+..+-+||+.+ ..+- ..... ..-+...+|||||++|+--+.+ +.|.++|.++|+.
T Consensus 129 ~l~tGsGD~TvR~WD~~T--eTp~~t~KgH----~~WVlcvawsPDgk~iASG~~d---------g~I~lwdpktg~~~g 193 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDT--ETPLFTCKGH----KNWVLCVAWSPDGKKIASGSKD---------GSIRLWDPKTGQQIG 193 (480)
T ss_pred eEEecCCCceEEeeccCC--CCcceeecCC----ccEEEEEEECCCcchhhccccC---------CeEEEecCCCCCccc
Confidence 344444566788889887 3322 22222 3556778999999998765543 5699999988764
Q ss_pred EEeeeCCCeeeeeee-----CCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 234 QVLVSGSDFYAFPRM-----DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~-----SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
+.|......+...+| .|.+++||-.+. ...+.++|+. .++. +.++.++. ..+.-+.|-.+
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~sk--------Dg~vrIWd~~-~~~~--~~~lsgHT----~~VTCvrwGG~ 258 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSK--------DGSVRIWDTK-LGTC--VRTLSGHT----ASVTCVRWGGE 258 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccC--------CCCEEEEEcc-CceE--EEEeccCc----cceEEEEEcCC
Confidence 455555566777777 678887775542 2347888887 5554 66777776 66777888655
Q ss_pred CcEEEEEec
Q 004816 309 GELFFVTDR 317 (729)
Q Consensus 309 G~l~~~~~~ 317 (729)
| ++|....
T Consensus 259 g-liySgS~ 266 (480)
T KOG0271|consen 259 G-LIYSGSQ 266 (480)
T ss_pred c-eEEecCC
Confidence 5 5555543
No 208
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.34 E-value=0.00016 Score=79.45 Aligned_cols=160 Identities=13% Similarity=0.120 Sum_probs=100.4
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
++..+.++.+ ..+.....+.+|++||+..+....+.+... ...+...+|+|+|+.|+..+.+ ..+.
T Consensus 205 ~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH----~~~v~~~~f~p~g~~i~Sgs~D---------~tvr 271 (456)
T KOG0266|consen 205 GVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGH----STYVTSVAFSPDGNLLVSGSDD---------GTVR 271 (456)
T ss_pred ceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCC----CCceEEEEecCCCCEEEEecCC---------CcEE
Confidence 3444444433 356666678899999994310233455444 4556888999999765555443 3588
Q ss_pred EEEcCCCceEEe-eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc-cccC
Q 004816 225 AIALNGQNIQVL-VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE-SPTE 302 (729)
Q Consensus 225 ~~dl~~g~~~~l-t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~ 302 (729)
++|+.+++.... ....+..+..+|++||+.|+-.+. ...|.++|+. ++...-...+.+.. . . .+..
T Consensus 272 iWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~--------d~~i~vwd~~-~~~~~~~~~~~~~~-~--~~~~~~ 339 (456)
T KOG0266|consen 272 IWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY--------DGTIRVWDLE-TGSKLCLKLLSGAE-N--SAPVTS 339 (456)
T ss_pred EEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC--------CccEEEEECC-CCceeeeecccCCC-C--CCceeE
Confidence 889998877554 445567888999999998876542 2349999998 66631022333332 1 2 3567
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCe
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
..|+|||+.+++... ++...+| |+..+.
T Consensus 340 ~~fsp~~~~ll~~~~-d~~~~~w--~l~~~~ 367 (456)
T KOG0266|consen 340 VQFSPNGKYLLSASL-DRTLKLW--DLRSGK 367 (456)
T ss_pred EEECCCCcEEEEecC-CCeEEEE--EccCCc
Confidence 889999995555544 3444454 555544
No 209
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=98.33 E-value=1.2e-05 Score=81.14 Aligned_cols=222 Identities=8% Similarity=0.016 Sum_probs=133.9
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCC--CCEEEEEEeccCCCCCCcceEEEEEEcCCC-
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPR--FNRYVTVREDRRQDALNSTTEIVAIALNGQ- 231 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPd--G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g- 231 (729)
.++.+..-+|.+-+|.... .... .+-.. ..++.+..|+|. +..++-.+.+. .+.++++++.
T Consensus 188 ~~laT~swsG~~kvW~~~~--~~~~~~l~gH----~~~v~~~~fhP~~~~~~lat~s~Dg---------tvklw~~~~e~ 252 (459)
T KOG0272|consen 188 KHLATGSWSGLVKVWSVPQ--CNLLQTLRGH----TSRVGAAVFHPVDSDLNLATASADG---------TVKLWKLSQET 252 (459)
T ss_pred CeEEEeecCCceeEeecCC--cceeEEEecc----ccceeeEEEccCCCccceeeeccCC---------ceeeeccCCCc
Confidence 4445555567777787765 4332 33333 467788999997 45555544433 3445566553
Q ss_pred ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 232 NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 232 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
...+|+.........+|.|+|++|+-.+.|.. -.++|+. ++.. .....++. ..+...+|.+||.|
T Consensus 253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~t--------WRlWD~~-tk~E--lL~QEGHs----~~v~~iaf~~DGSL 317 (459)
T KOG0272|consen 253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDST--------WRLWDLE-TKSE--LLLQEGHS----KGVFSIAFQPDGSL 317 (459)
T ss_pred chhhhhcchhhheeeeecCCCceeeecccccc--------hhhcccc-cchh--hHhhcccc----cccceeEecCCCce
Confidence 34566666677888999999999998876653 2244666 4432 44556666 77889999999997
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
+.+... ....+|| |+.+|...-... ...++-+..|+ .+++.+.+...|+..+||.+... ..+
T Consensus 318 ~~tGGl-D~~~RvW--DlRtgr~im~L~gH~k~I~~V~fs-------------PNGy~lATgs~Dnt~kVWDLR~r-~~l 380 (459)
T KOG0272|consen 318 AATGGL-DSLGRVW--DLRTGRCIMFLAGHIKEILSVAFS-------------PNGYHLATGSSDNTCKVWDLRMR-SEL 380 (459)
T ss_pred eeccCc-cchhhee--ecccCcEEEEecccccceeeEeEC-------------CCceEEeecCCCCcEEEeeeccc-ccc
Confidence 766544 3444554 777876554442 22333344455 34566667777888889866432 223
Q ss_pred EeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEE
Q 004816 391 SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 391 ~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
-.+.....-|..+ .+..+++++.++ -++...+|.
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~Tas-yD~t~kiWs 416 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTAS-YDNTVKIWS 416 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcc-cCcceeeec
Confidence 3444444556666 334566665554 443444443
No 210
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.33 E-value=0.00011 Score=73.67 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=102.3
Q ss_pred CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEE
Q 004816 177 SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMA 256 (729)
Q Consensus 177 ~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la 256 (729)
+..+++....+........+++||||+.++++..... ...||+...++ ..+.+..+. ....|.|++||...+
T Consensus 10 ~~~~pv~g~~~~~~~~~~s~AvS~dg~~~A~v~~~~~------~~~L~~~~~~~-~~~~~~~g~-~l~~PS~d~~g~~W~ 81 (253)
T PF10647_consen 10 GGVTPVPGALGEGGYDVTSPAVSPDGSRVAAVSEGDG------GRSLYVGPAGG-PVRPVLTGG-SLTRPSWDPDGWVWT 81 (253)
T ss_pred CceeECCCCcCcCCccccceEECCCCCeEEEEEEcCC------CCEEEEEcCCC-cceeeccCC-ccccccccCCCCEEE
Confidence 3445555432111235678999999999999982221 36799988764 444443333 677899999976443
Q ss_pred EEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEc---CCC
Q 004816 257 WIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE---SNN 332 (729)
Q Consensus 257 ~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~---~~g 332 (729)
+.. ... ...+.. +.. +++.....+-.... . ..+..+.+||||. ++++... .+..+|++.-+ ..|
T Consensus 82 v~~-~~~-----~~~~~~-~~~-~g~~~~~~v~~~~~-~--~~I~~l~vSpDG~RvA~v~~~-~~~~~v~va~V~r~~~g 149 (253)
T PF10647_consen 82 VDD-GSG-----GVRVVR-DSA-SGTGEPVEVDWPGL-R--GRITALRVSPDGTRVAVVVED-GGGGRVYVAGVVRDGDG 149 (253)
T ss_pred EEc-CCC-----ceEEEE-ecC-CCcceeEEeccccc-C--CceEEEEECCCCcEEEEEEec-CCCCeEEEEEEEeCCCC
Confidence 333 221 122222 323 34433333322221 0 1567899999998 8888766 44466664432 233
Q ss_pred eEEEee-------ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 333 EVLAIY-------SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 333 ~~~~l~-------~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
..+.+. .......+..|. ++..|++.....+......+..+++..+.++....
T Consensus 150 ~~~~l~~~~~~~~~~~~~v~~v~W~-------------~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l~~~~~ 209 (253)
T PF10647_consen 150 VPRRLTGPRRVAPPLLSDVTDVAWS-------------DDSTLVVLGRSAGGPVVRLVSVDGGPSTPLPSVNL 209 (253)
T ss_pred CcceeccceEecccccCcceeeeec-------------CCCEEEEEeCCCCCceeEEEEccCCcccccCCCCC
Confidence 233332 111233344555 44455555544433222256777888877754443
No 211
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=98.33 E-value=0.00049 Score=66.56 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=136.5
Q ss_pred EEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccC-----------CC--
Q 004816 150 FRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRR-----------QD-- 215 (729)
Q Consensus 150 ~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~-----------~~-- 215 (729)
+.|+.+ +.+.+...+|.|.+||.-+. .+...|+-. ..-+...++||.|++|+.---++. +.
T Consensus 61 ~~ws~Dsr~ivSaSqDGklIvWDs~Tt-nK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~ 135 (343)
T KOG0286|consen 61 MDWSTDSRRIVSASQDGKLIVWDSFTT-NKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNV 135 (343)
T ss_pred eEecCCcCeEEeeccCCeEEEEEcccc-cceeEEecC----ceeEEEEEECCCCCeEEecCcCceeEEEecccccccccc
Confidence 334433 55677778999999998763 344444433 355677889999998877421110 00
Q ss_pred -------------------------CCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeCC-CCCeEEEEEecCCCCCCC
Q 004816 216 -------------------------ALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMDP-RGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 216 -------------------------~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~SP-DG~~la~~~~~~~~~~~~ 268 (729)
.........++|+++|+..+...| .+......++| |++..+--+-
T Consensus 136 ~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c-------- 207 (343)
T KOG0286|consen 136 RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC-------- 207 (343)
T ss_pred eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc--------
Confidence 001122345567777765554443 34455678888 8885432221
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL 348 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 348 (729)
...-+++|+. .+.. +..+.+++ ..+..+.|-|+|. .|.+..+.+.-+|| |+...+...+...+.
T Consensus 208 D~~aklWD~R-~~~c--~qtF~ghe----sDINsv~ffP~G~-afatGSDD~tcRly--DlRaD~~~a~ys~~~------ 271 (343)
T KOG0286|consen 208 DKSAKLWDVR-SGQC--VQTFEGHE----SDINSVRFFPSGD-AFATGSDDATCRLY--DLRADQELAVYSHDS------ 271 (343)
T ss_pred ccceeeeecc-Ccce--eEeecccc----cccceEEEccCCC-eeeecCCCceeEEE--eecCCcEEeeeccCc------
Confidence 2235677877 5655 66788887 6678899999996 33332224666665 665555555543221
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEE
Q 004816 349 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEG 414 (729)
Q Consensus 349 w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~ 414 (729)
-..+..++.|. ..++++|....+..-++|-. +++...-.|......|..+ ..+++..+...
T Consensus 272 ~~~gitSv~FS----~SGRlLfagy~d~~c~vWDt-lk~e~vg~L~GHeNRvScl~~s~DG~av~Tg 333 (343)
T KOG0286|consen 272 IICGITSVAFS----KSGRLLFAGYDDFTCNVWDT-LKGERVGVLAGHENRVSCLGVSPDGMAVATG 333 (343)
T ss_pred ccCCceeEEEc----ccccEEEeeecCCceeEeec-cccceEEEeeccCCeeEEEEECCCCcEEEec
Confidence 12244566776 56677777666666667632 4555555677667778887 45555444433
No 212
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=98.32 E-value=2.5e-06 Score=88.29 Aligned_cols=78 Identities=27% Similarity=0.409 Sum_probs=63.6
Q ss_pred hhhcCcccccCCCC-CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc--ccHHHHHHHHHHHHH
Q 004816 632 YYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA--ENIKFTLEQQMVFFA 708 (729)
Q Consensus 632 ~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~--~~~~~~~~~~~~fl~ 708 (729)
+...++...+.++. +|+|++||.+|..||..++..+++..+.. +.+..++++++|..... ....+.+..+.+||.
T Consensus 218 ~~~~d~~~~~~~i~~~P~l~~~G~~D~~vp~~~~~~~~~~~~~~--~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~ 295 (299)
T COG1073 218 LLLLDPFDDAEKISPRPVLLVHGERDEVVPLRDAEDLYEAARER--PKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLE 295 (299)
T ss_pred hccCcchhhHhhcCCcceEEEecCCCcccchhhhHHHHhhhccC--CceEEEecCCccccccCccHHHHHHHHHHHHHHH
Confidence 44456666677777 69999999999999999999999998875 66888899999987642 333489999999999
Q ss_pred HHh
Q 004816 709 RVV 711 (729)
Q Consensus 709 ~~l 711 (729)
+++
T Consensus 296 ~~l 298 (299)
T COG1073 296 RHL 298 (299)
T ss_pred Hhc
Confidence 876
No 213
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=98.32 E-value=2.6e-05 Score=80.88 Aligned_cols=150 Identities=17% Similarity=0.232 Sum_probs=109.4
Q ss_pred HHHhCCCCCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEec-cccChhHHh----hhcc-hh---hhhhhh-h---hcC
Q 004816 561 FLVGSGKADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLY-GVADLSMLR----AETH-KF---ESRYID-N---LVG 627 (729)
Q Consensus 561 ~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~-~~~d~~~~~----~~~~-~~---~~~~~~-~---~~~ 627 (729)
++.+...++.++.++.|.|==|.++..++..++|++|++.+. .+.++.... .... .+ ...|.. . .++
T Consensus 162 ~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D~RV~aivP~Vid~LN~~~~l~h~y~~yG~~ws~a~~dY~~~gi~~~l~ 241 (367)
T PF10142_consen 162 FLKKKFGVNIEKFVVTGASKRGWTTWLTAAVDPRVKAIVPIVIDVLNMKANLEHQYRSYGGNWSFAFQDYYNEGITQQLD 241 (367)
T ss_pred HHHhhcCCCccEEEEeCCchHhHHHHHhhccCcceeEEeeEEEccCCcHHHHHHHHHHhCCCCccchhhhhHhCchhhcC
Confidence 333345667899999999999999988888778999888653 445544321 1111 10 011111 1 111
Q ss_pred Ch---hhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHH
Q 004816 628 SE---KDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQM 704 (729)
Q Consensus 628 ~~---~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~ 704 (729)
.+ +.....+|+.+.++++.|-|++.|..|....+..+.-++..|+. +..+..+|+.+|.... ....+.+.
T Consensus 242 tp~f~~L~~ivDP~~Y~~rL~~PK~ii~atgDeFf~pD~~~~y~d~L~G---~K~lr~vPN~~H~~~~----~~~~~~l~ 314 (367)
T PF10142_consen 242 TPEFDKLMQIVDPYSYRDRLTMPKYIINATGDEFFVPDSSNFYYDKLPG---EKYLRYVPNAGHSLIG----SDVVQSLR 314 (367)
T ss_pred CHHHHHHHHhcCHHHHHHhcCccEEEEecCCCceeccCchHHHHhhCCC---CeeEEeCCCCCcccch----HHHHHHHH
Confidence 22 34566799999999999999999999999999999999999985 5589999999998765 67788899
Q ss_pred HHHHHHhCCCCCC
Q 004816 705 VFFARVVGHFDVA 717 (729)
Q Consensus 705 ~fl~~~l~~~~~~ 717 (729)
.|+...+.+.+-+
T Consensus 315 ~f~~~~~~~~~lP 327 (367)
T PF10142_consen 315 AFYNRIQNGRPLP 327 (367)
T ss_pred HHHHHHHcCCCCC
Confidence 9999987755443
No 214
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=98.31 E-value=3.3e-05 Score=86.81 Aligned_cols=263 Identities=13% Similarity=0.051 Sum_probs=136.0
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeec-CCCCCCCceeeecceecCCCCEEEE-EEeccCCCCCCcceEEEEEEcCCCc
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPI-TPDYGEPLVSYADGIFDPRFNRYVT-VREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~l-t~~~~~~~~~~~~~~~SPdG~~l~~-~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
.+|+|+....++|.++|.++ ..++.+ +.. ......|.|||||++|+| +.-..-.. ...||+.++.+..
T Consensus 319 tkiAfv~~~~~~L~~~D~dG--~n~~~ve~~~----~~~i~sP~~SPDG~~vAY~ts~e~~~g----~s~vYv~~L~t~~ 388 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTK--GASRAVEIED----TISVYHPDISPDGKKVAFCTGIEGLPG----KSSVYVRNLNASG 388 (912)
T ss_pred eeEEEEEcCCCeEEEEecCC--CCceEEEecC----CCceecCcCCCCCCEEEEEEeecCCCC----CceEEEEehhccC
Confidence 37999987667999999997 777777 554 355688999999999999 54332011 3679999998743
Q ss_pred eEEeeeCCCeeeeeee--CCCCCe-EEEEEecCCC---CCCCCcEEEEEEecCCCCeee-eEEecCCCCCccccccCcee
Q 004816 233 IQVLVSGSDFYAFPRM--DPRGER-MAWIEWHHPN---MPWDKAELWVGYISENGDVYK-RVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~--SPDG~~-la~~~~~~~~---~~~~~~~l~~~d~~~~g~~~~-~~~~~~~~~~~~~~~~~~~w 305 (729)
...+--.-....-|+| .+.|.. |+|++....+ ..|....-|.+... +|+... ..++.+. .+--.
T Consensus 389 ~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~-~gkfg~p~kl~dga--------~hggv 459 (912)
T TIGR02171 389 SGLVKLPVENAAIPRWRVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFA-NGKFGTPKKLFDGA--------YHGGV 459 (912)
T ss_pred CCceEeecccccccceEecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEec-CCCCCCchhhhccc--------ccccc
Confidence 2222111112344666 566655 6677633222 13445567899988 787643 3333332 12234
Q ss_pred CCCCcEEEEEecCCCceEEEEEEcCCCeEEEeecc-CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
|.|.+|+++..+ -=..++.--++.+++-..-..+ .+...+.. ..+.+.-.||+=.+.-+.-++...-.-..+|.+.|
T Consensus 460 s~~~~lavtga~-llr~~~~~~~~~~~~~~vwyn~eqacn~sl~-~d~~~rt~fldfgg~tg~~fvg~~y~~he~~lvad 537 (912)
T TIGR02171 460 SEDLNLAVSGAR-LLRAHVANEDVDNGKDDVWYNGEQACNASLA-KDGSKRTLFLDFGGSTGQAFVGQKYGVHERLLVAD 537 (912)
T ss_pred ccCCceeeehhh-HhhhhhcccccccCccceeecchhccchhhh-ccCCcceEEEecCCccchhhccccccceeEEEEec
Confidence 556556665443 1111111111222222222211 11110000 01111112221000000111111112234677888
Q ss_pred CCCCceEeeccCCc---ceEEeee-eCCEEEEEEeCCCCC-ceEEEEEcCCCcceeeee
Q 004816 385 DFGHSLSLLDIPFT---DIDNITL-GNDCLFVEGASGVEP-SSVAKVTLDDHKLKAVDF 438 (729)
Q Consensus 385 ~~~g~~~~lt~~~~---~v~~~~~-~~~~~~~~~~~~~~~-~~ly~~d~~~~~~~~lt~ 438 (729)
-.|+.++.+..+.. +...+.. ..+.++..-.+.+.. ..|.++++..+++..|.+
T Consensus 538 s~gklv~~v~ap~gytfdh~ew~~~~~~~~vatl~n~~g~h~ki~lv~~~~~~i~~l~e 596 (912)
T TIGR02171 538 SKGKLVRAVAAPAGYTFDHTEWVTGRSNLAVATLTNVNGAHKKIALINLSDSKVTELVE 596 (912)
T ss_pred CCCchhhhccCCCCccccchhhhcCCCceEEEEeecCCCccceEEEEEcCCCceEEeec
Confidence 77777777776642 2233333 345555555555544 449999999998866654
No 215
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.29 E-value=2.9e-05 Score=81.46 Aligned_cols=49 Identities=27% Similarity=0.453 Sum_probs=41.7
Q ss_pred cCCCCCCEEEEEeCCCCCCChHHHHHH-------HHHHHhCCCCEEEEEECCCCcc
Q 004816 641 VDKFSCPIILFQGLEDKVVPPDQARKI-------YKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 641 ~~~i~~PvL~i~G~~D~~vp~~~~~~~-------~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
+++|++|+.++++..|.+.|++|+..+ .+.++.+|..+.+.+-+..||-
T Consensus 293 Lr~Ir~Piivfas~gDnITPP~QaL~WI~dlY~~~~ei~a~gQ~IVY~~h~~vGHL 348 (581)
T PF11339_consen 293 LRNIRSPIIVFASYGDNITPPQQALNWIPDLYPDTEEIKAAGQTIVYLLHESVGHL 348 (581)
T ss_pred hhhCCCCEEEEeccCCCCCChhHhccchHhhcCCHHHHHhCCCEEEEEecCCCCce
Confidence 778999999999999999999999443 4557778888888888999994
No 216
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.28 E-value=5.2e-05 Score=80.32 Aligned_cols=198 Identities=11% Similarity=0.001 Sum_probs=100.9
Q ss_pred EEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-E
Q 004816 158 IFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-V 235 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~ 235 (729)
+.+...+++|.++|.++ .+ ...+..+ ........+||||+++ |+...+ ..|.++|+.+++.. +
T Consensus 9 ~V~~~~~~~v~viD~~t--~~~~~~i~~~----~~~h~~~~~s~Dgr~~-yv~~rd--------g~vsviD~~~~~~v~~ 73 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGAT--NKVVARIPTG----GAPHAGLKFSPDGRYL-YVANRD--------GTVSVIDLATGKVVAT 73 (369)
T ss_dssp EEEEGGGTEEEEEETTT---SEEEEEE-S----TTEEEEEE-TT-SSEE-EEEETT--------SEEEEEETTSSSEEEE
T ss_pred EEEecCCCEEEEEECCC--CeEEEEEcCC----CCceeEEEecCCCCEE-EEEcCC--------CeEEEEECCcccEEEE
Confidence 34455567999999887 43 3444433 1224556799999985 554432 46999999998754 4
Q ss_pred eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc-ccccCceeCCCCcEEEE
Q 004816 236 LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV-ESPTEPKWSSKGELFFV 314 (729)
Q Consensus 236 lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~~wspDG~l~~~ 314 (729)
+..+ ....+.++||||++|+..... ..++.++|.+ +.+........+...+-. ..+..+.-+|+...++.
T Consensus 74 i~~G-~~~~~i~~s~DG~~~~v~n~~-------~~~v~v~D~~-tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv 144 (369)
T PF02239_consen 74 IKVG-GNPRGIAVSPDGKYVYVANYE-------PGTVSVIDAE-TLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVV 144 (369)
T ss_dssp EE-S-SEEEEEEE--TTTEEEEEEEE-------TTEEEEEETT-T--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEE
T ss_pred EecC-CCcceEEEcCCCCEEEEEecC-------CCceeEeccc-cccceeecccccccccccCCCceeEEecCCCCEEEE
Confidence 4333 345678999999998766543 2458889877 555422211111110000 11223445666653333
Q ss_pred EecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 315 TDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 315 ~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
+.. ...+++.+|....+...+...... .. .++..|.+ ++++++..... ...|..+|.++++...+
T Consensus 145 ~lk--d~~~I~vVdy~d~~~~~~~~i~~g--~~-----~~D~~~dp---dgry~~va~~~--sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 145 NLK--DTGEIWVVDYSDPKNLKVTTIKVG--RF-----PHDGGFDP---DGRYFLVAANG--SNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EET--TTTEEEEEETTTSSCEEEEEEE----TT-----EEEEEE-T---TSSEEEEEEGG--GTEEEEEETTTTEEEEE
T ss_pred EEc--cCCeEEEEEeccccccceeeeccc--cc-----ccccccCc---ccceeeecccc--cceeEEEeeccceEEEE
Confidence 332 234788888665432222211100 00 01223332 66666655433 33788889888776543
No 217
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.28 E-value=0.00048 Score=82.86 Aligned_cols=222 Identities=14% Similarity=0.109 Sum_probs=121.7
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-C-Cc------ccccccccCCceEEEECCEEEE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-E-YA------VRTTAQEYGGGAFRIFGDTVIF 159 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~-~-~~------~~~~~~~~~~~~~~~~~~~i~~ 159 (729)
..++++.+++ ++.+|+.+.. .+| ++.++.. |.....+.. + .+ ....+..+.+.++..+++.|++
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~---n~r--I~v~d~~--G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYV 640 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSN---HNR--IVVTDLD--GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYV 640 (1057)
T ss_pred CCCceEEEECCCCeEEEEECC---CCe--EEEEeCC--CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEE
Confidence 4567889988 7889888752 344 4444444 222111111 0 00 0112222333344444556666
Q ss_pred EECCCCcEEEEeCCCCCCCCeecCCCC-------CC-C-----ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 160 SNYKDQRLYKHSIDSKDSSPLPITPDY-------GE-P-----LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 160 ~~~~~~~l~~~d~~~~~~~~~~lt~~~-------~~-~-----~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.+.....|.++|+.+ +..+.+.... +. . -....+.+++|++..|+.+... .+.|+++
T Consensus 641 aDt~n~~Ir~id~~~--~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~--------~~~I~v~ 710 (1057)
T PLN02919 641 ADTENHALREIDFVN--ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG--------QHQIWEY 710 (1057)
T ss_pred EeCCCceEEEEecCC--CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC--------CCeEEEE
Confidence 665556888899876 5555443210 00 0 0112467899977765544322 2679999
Q ss_pred EcCCCceEEeeeCC---------------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE---
Q 004816 227 ALNGQNIQVLVSGS---------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC--- 288 (729)
Q Consensus 227 dl~~g~~~~lt~~~---------------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~--- 288 (729)
+..++..+.+.... ..-.+.+++|||++|++... .+..|.++|++ ++......-
T Consensus 711 d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-------~n~~Irv~D~~-tg~~~~~~gg~~ 782 (1057)
T PLN02919 711 NISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-------ESSSIRALDLK-TGGSRLLAGGDP 782 (1057)
T ss_pred ECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-------CCCeEEEEECC-CCcEEEEEeccc
Confidence 99887665443210 11235689999999877653 23569999987 554311100
Q ss_pred --------ecCCCC----CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 289 --------VAGFDP----TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 289 --------~~~~~~----~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
+...+. ........+.+++||++ |+++. +..+|.++|++++....+.
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~L-YVADs--~N~rIrviD~~tg~v~tia 841 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQI-YVADS--YNHKIKKLDPATKRVTTLA 841 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcE-EEEEC--CCCEEEEEECCCCeEEEEe
Confidence 000000 00012346678999975 45554 4567999999988877665
No 218
>PTZ00420 coronin; Provisional
Probab=98.27 E-value=0.001 Score=73.78 Aligned_cols=211 Identities=14% Similarity=0.096 Sum_probs=110.0
Q ss_pred ceeeecceecCC-CCEEEEEEeccCCCCCCcceEEEEEEcCCCce---------EEeeeCCCeeeeeeeCCCCCeEEEEE
Q 004816 190 LVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQNI---------QVLVSGSDFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 190 ~~~~~~~~~SPd-G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~---------~~lt~~~~~~~~~~~SPDG~~la~~~ 259 (729)
...+.+..|+|+ ++.|+....+ ..|.++++.++.. ..+..........+|+|+++.++.+.
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~D---------gtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSED---------LTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 345788999997 5655444432 4577888765321 12333344567889999999876554
Q ss_pred ecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE-ee
Q 004816 260 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IY 338 (729)
Q Consensus 260 ~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~ 338 (729)
.. ...|.++|+. +++. ...+. .. ..+..+.|+|||+++..+.. .+ .|.++|+.+++... +.
T Consensus 145 S~-------DgtIrIWDl~-tg~~--~~~i~-~~----~~V~SlswspdG~lLat~s~-D~--~IrIwD~Rsg~~i~tl~ 206 (568)
T PTZ00420 145 GF-------DSFVNIWDIE-NEKR--AFQIN-MP----KKLSSLKWNIKGNLLSGTCV-GK--HMHIIDPRKQEIASSFH 206 (568)
T ss_pred eC-------CCeEEEEECC-CCcE--EEEEe-cC----CcEEEEEECCCCCEEEEEec-CC--EEEEEECCCCcEEEEEe
Confidence 22 2348899998 5653 22222 22 34578899999995544433 23 46777888876543 22
Q ss_pred ccCccccC-CcccccCcceeeeeecCCCCEEEEEEEEC-CeEEEEEEECCC-Cc-eEeecc--CCcceEEe-eeeCCEEE
Q 004816 339 SLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQN-GRSYLGILDDFG-HS-LSLLDI--PFTDIDNI-TLGNDCLF 411 (729)
Q Consensus 339 ~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~l~~~s~~~-g~~~ly~~d~~~-g~-~~~lt~--~~~~v~~~-~~~~~~~~ 411 (729)
........ ..|.. .|.+ +++.|+.+...+ ..+.|.++|+.. ++ +..+.. ....+... ..+.+.++
T Consensus 207 gH~g~~~s~~v~~~-----~fs~---d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 207 IHDGGKNTKNIWID-----GLGG---DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred cccCCceeEEEEee-----eEcC---CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 11111111 12221 1111 555555444332 224566667653 22 222222 12223333 33334444
Q ss_pred EEEeCCCCCceEEEEEcCCCcceeeee
Q 004816 412 VEGASGVEPSSVAKVTLDDHKLKAVDF 438 (729)
Q Consensus 412 ~~~~~~~~~~~ly~~d~~~~~~~~lt~ 438 (729)
+. ++.+ ..++.+++..+....|++
T Consensus 279 ls-GkGD--~tIr~~e~~~~~~~~l~~ 302 (568)
T PTZ00420 279 LI-GKGD--GNCRYYQHSLGSIRKVNE 302 (568)
T ss_pred EE-EECC--CeEEEEEccCCcEEeecc
Confidence 44 4333 345666665666555553
No 219
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.26 E-value=0.00061 Score=81.96 Aligned_cols=257 Identities=12% Similarity=0.097 Sum_probs=138.2
Q ss_pred cCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCC-CCC-C--------CceeeecceecCCCCEEEEEEeccCC
Q 004816 145 YGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP-DYG-E--------PLVSYADGIFDPRFNRYVTVREDRRQ 214 (729)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~-~~~-~--------~~~~~~~~~~SPdG~~l~~~~~~~~~ 214 (729)
+++-++...++.+++.+...++|.++|.++ .....+.. +.. . .-.+....+++++|+.| |+.+..
T Consensus 570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G--~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L-YVaDt~-- 644 (1057)
T PLN02919 570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDG--NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL-YVADTE-- 644 (1057)
T ss_pred CceEEEECCCCeEEEEECCCCeEEEEeCCC--CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE-EEEeCC--
Confidence 344444445667888877778999999875 43333322 100 0 00123566789998864 555433
Q ss_pred CCCCcceEEEEEEcCCCceEEeeeCC-----------------CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEe
Q 004816 215 DALNSTTEIVAIALNGQNIQVLVSGS-----------------DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 277 (729)
Q Consensus 215 ~~~~~~~~l~~~dl~~g~~~~lt~~~-----------------~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~ 277 (729)
+..|.++|+.++.++.+.... ..-.+.+++|++..|++... .+.+|+++|.
T Consensus 645 -----n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-------~~~~I~v~d~ 712 (1057)
T PLN02919 645 -----NHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-------GQHQIWEYNI 712 (1057)
T ss_pred -----CceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-------CCCeEEEEEC
Confidence 256889999888777664310 01124589997777766552 2355999988
Q ss_pred cCCCCeeeeEEecCC------C--CC---ccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCc----
Q 004816 278 SENGDVYKRVCVAGF------D--PT---IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA---- 342 (729)
Q Consensus 278 ~~~g~~~~~~~~~~~------~--~~---~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~---- 342 (729)
. ++... .+.+. + .. -......++++|||+.+|+++. +..+|.++|++++..+.+.....
T Consensus 713 ~-~g~v~---~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~~Irv~D~~tg~~~~~~gg~~~~~~ 786 (1057)
T PLN02919 713 S-DGVTR---VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESSSIRALDLKTGGSRLLAGGDPTFSD 786 (1057)
T ss_pred C-CCeEE---EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCCeEEEEECCCCcEEEEEecccccCc
Confidence 7 55431 11110 0 00 0013345789999984455554 45689999998876554431110
Q ss_pred ---ccc---CC---cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc-CC-------------cc
Q 004816 343 ---EFS---RP---LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI-PF-------------TD 399 (729)
Q Consensus 343 ---~~~---~~---~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~-~~-------------~~ 399 (729)
.++ .+ ........+.+. .++.+|++.. +...|.++|.+++.+..+.. +. ..
T Consensus 787 ~l~~fG~~dG~g~~~~l~~P~Gvavd----~dG~LYVADs--~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~ 860 (1057)
T PLN02919 787 NLFKFGDHDGVGSEVLLQHPLGVLCA----KDGQIYVADS--YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSE 860 (1057)
T ss_pred ccccccCCCCchhhhhccCCceeeEe----CCCcEEEEEC--CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCC
Confidence 000 00 000112234444 3334665543 44567777888887665532 11 11
Q ss_pred eEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 400 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 400 v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
...+ ..++++++ ++.+. ...|.++|+++++.
T Consensus 861 P~GIavd~dG~ly-VaDt~--Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 861 PAGLALGENGRLF-VADTN--NSLIRYLDLNKGEA 892 (1057)
T ss_pred ceEEEEeCCCCEE-EEECC--CCEEEEEECCCCcc
Confidence 2233 33444543 33322 23677888877764
No 220
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.26 E-value=4.6e-05 Score=68.76 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=90.1
Q ss_pred CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhh
Q 004816 547 WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNL 625 (729)
Q Consensus 547 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~ 625 (729)
|..-..+|..+.++..+.. -++.+.|++||.|+.+++.++. ....++++++.+|.---... .
T Consensus 38 w~~P~~~dWi~~l~~~v~a---~~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVAppd~~~~~-----~--------- 100 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNA---AEGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPPDVSRPE-----I--------- 100 (181)
T ss_pred CCCCCHHHHHHHHHHHHhc---cCCCeEEEEecccHHHHHHHHHhhhhccceEEEecCCCccccc-----c---------
Confidence 4444577777776655554 2455999999999999999998 44478999999885311100 0
Q ss_pred cCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccC--CcccHHHHHHHH
Q 004816 626 VGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFR--KAENIKFTLEQQ 703 (729)
Q Consensus 626 ~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~--~~~~~~~~~~~~ 703 (729)
........+|+. ..+..-|.++++..+|+.|++++++.+++++.. .++....+||... .-..+.+.+..+
T Consensus 101 --~~~~~~tf~~~p-~~~lpfps~vvaSrnDp~~~~~~a~~~a~~wgs-----~lv~~g~~GHiN~~sG~g~wpeg~~~l 172 (181)
T COG3545 101 --RPKHLMTFDPIP-REPLPFPSVVVASRNDPYVSYEHAEDLANAWGS-----ALVDVGEGGHINAESGFGPWPEGYALL 172 (181)
T ss_pred --chhhccccCCCc-cccCCCceeEEEecCCCCCCHHHHHHHHHhccH-----hheecccccccchhhcCCCcHHHHHHH
Confidence 011111222222 223346899999999999999999999999876 6888888999532 223444555555
Q ss_pred HHHHH
Q 004816 704 MVFFA 708 (729)
Q Consensus 704 ~~fl~ 708 (729)
.+|+.
T Consensus 173 ~~~~s 177 (181)
T COG3545 173 AQLLS 177 (181)
T ss_pred HHHhh
Confidence 55543
No 221
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=98.24 E-value=0.0002 Score=71.75 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=95.3
Q ss_pred ceEEEECCEEEEEE--CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 148 GAFRIFGDTVIFSN--YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 148 ~~~~~~~~~i~~~~--~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+++.+++.+++.. .....||+....+ ..+.+... ..+..|+|+++|..+++..... ...+++
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~~~---~~~~~~~g-----~~l~~PS~d~~g~~W~v~~~~~-------~~~~~~ 93 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPAGG---PVRPVLTG-----GSLTRPSWDPDGWVWTVDDGSG-------GVRVVR 93 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcCCC---cceeeccC-----CccccccccCCCCEEEEEcCCC-------ceEEEE
Confidence 34555677888887 5556899998763 44444332 3678899999977544433222 122222
Q ss_pred EEcCCCceEE--eee-CCC-eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC--CCCe----eeeEEecCCCCC
Q 004816 226 IALNGQNIQV--LVS-GSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDV----YKRVCVAGFDPT 295 (729)
Q Consensus 226 ~dl~~g~~~~--lt~-~~~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~--~g~~----~~~~~~~~~~~~ 295 (729)
+..+++... +.. ... .+..+++||||.+||++..+.. ..+|++.-+.. +|.. ....+.....
T Consensus 94 -~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~-----~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~-- 165 (253)
T PF10647_consen 94 -DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGG-----GGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL-- 165 (253)
T ss_pred -ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCC-----CCeEEEEEEEeCCCCCcceeccceEeccccc--
Confidence 333343332 321 122 6778999999999999985442 36688877662 2311 1112222211
Q ss_pred ccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 296 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 296 ~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
..+..+.|.+|++|++......+.... .+..+++..+.+.
T Consensus 166 --~~v~~v~W~~~~~L~V~~~~~~~~~~~-~v~~dG~~~~~l~ 205 (253)
T PF10647_consen 166 --SDVTDVAWSDDSTLVVLGRSAGGPVVR-LVSVDGGPSTPLP 205 (253)
T ss_pred --CcceeeeecCCCEEEEEeCCCCCceeE-EEEccCCcccccC
Confidence 345678999999976666552222222 4666677666653
No 222
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=98.23 E-value=1.2e-05 Score=74.28 Aligned_cols=166 Identities=16% Similarity=0.127 Sum_probs=98.1
Q ss_pred hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 511 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 511 ~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
...+..|+++|+.|+.+|-. +-|.. .+-......|+..++++..++. ..+++.|+|.|+|+-+.-.+..
T Consensus 19 ~~~a~~l~~~G~~VvGvdsl------~Yfw~---~rtP~~~a~Dl~~~i~~y~~~w--~~~~vvLiGYSFGADvlP~~~n 87 (192)
T PF06057_consen 19 KQIAEALAKQGVPVVGVDSL------RYFWS---ERTPEQTAADLARIIRHYRARW--GRKRVVLIGYSFGADVLPFIYN 87 (192)
T ss_pred HHHHHHHHHCCCeEEEechH------HHHhh---hCCHHHHHHHHHHHHHHHHHHh--CCceEEEEeecCCchhHHHHHh
Confidence 34788999999999999953 11111 1222344788999999888874 4689999999999977766654
Q ss_pred -CC----CcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCC-CCEEEEEeCCCCCCChHHH
Q 004816 591 -FR----DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFS-CPIILFQGLEDKVVPPDQA 664 (729)
Q Consensus 591 -~~----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~-~PvL~i~G~~D~~vp~~~~ 664 (729)
-| .+++.++++.+-.... |+.+. ..+++....-...++...+.++. .|++.|+|++|.-..
T Consensus 88 rLp~~~r~~v~~v~Ll~p~~~~d--------Feihv-~~wlg~~~~~~~~~~~pei~~l~~~~v~CiyG~~E~d~~---- 154 (192)
T PF06057_consen 88 RLPAALRARVAQVVLLSPSTTAD--------FEIHV-SGWLGMGGDDAAYPVIPEIAKLPPAPVQCIYGEDEDDSL---- 154 (192)
T ss_pred hCCHHHHhheeEEEEeccCCcce--------EEEEh-hhhcCCCCCcccCCchHHHHhCCCCeEEEEEcCCCCCCc----
Confidence 33 3677777777643211 00000 11111111111123444556666 489999998875321
Q ss_pred HHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 665 RKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 665 ~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
...++. ..++.+..|| ||.|.. +-....+.|++-++
T Consensus 155 ---cp~l~~--~~~~~i~lpG-gHHfd~--dy~~La~~Il~~l~ 190 (192)
T PF06057_consen 155 ---CPSLRQ--PGVEVIALPG-GHHFDG--DYDALAKRILDALK 190 (192)
T ss_pred ---CccccC--CCcEEEEcCC-CcCCCC--CHHHHHHHHHHHHh
Confidence 122333 3568999998 555653 33445555555443
No 223
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.23 E-value=0.0012 Score=65.74 Aligned_cols=247 Identities=12% Similarity=0.049 Sum_probs=134.5
Q ss_pred eEEEE-CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 149 AFRIF-GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 149 ~~~~~-~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
+..++ ++.++.+.+.+|.|.++..+++ +....|... .....-..|.|-+..|++-..+ ..||.+.
T Consensus 111 ~~~FshdgtlLATGdmsG~v~v~~~stg-~~~~~~~~e----~~dieWl~WHp~a~illAG~~D---------GsvWmw~ 176 (399)
T KOG0296|consen 111 CCSFSHDGTLLATGDMSGKVLVFKVSTG-GEQWKLDQE----VEDIEWLKWHPRAHILLAGSTD---------GSVWMWQ 176 (399)
T ss_pred EEEEccCceEEEecCCCccEEEEEcccC-ceEEEeecc----cCceEEEEecccccEEEeecCC---------CcEEEEE
Confidence 33444 3356667777889999998873 334444422 2334556899988877666543 4699999
Q ss_pred cCCCceEEeeeCCC-eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC
Q 004816 228 LNGQNIQVLVSGSD-FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 228 l~~g~~~~lt~~~~-~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+.++...++..|.. ..+.=.|.||||+|+-.. + ...|.++++. +|.. .......+ . .-......+
T Consensus 177 ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy-~-------dgti~~Wn~k-tg~p--~~~~~~~e-~--~~~~~~~~~ 242 (399)
T KOG0296|consen 177 IPSQALCKVMSGHNSPCTCGEFIPDGKRILTGY-D-------DGTIIVWNPK-TGQP--LHKITQAE-G--LELPCISLN 242 (399)
T ss_pred CCCcceeeEecCCCCCcccccccCCCceEEEEe-c-------CceEEEEecC-CCce--eEEecccc-c--CcCCccccc
Confidence 98866666666543 233347999999997554 2 3458899998 6753 22222221 0 222344556
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
.+|.+++..+. .+ ..+.++..+|+.............+.-......+.+++.- ..=.|.....-+|.. ..+|+.
T Consensus 243 ~~~~~~~~g~~-e~--~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s-s~lpL~A~G~vdG~i--~iyD~a 316 (399)
T KOG0296|consen 243 LAGSTLTKGNS-EG--VACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS-SKLPLAACGSVDGTI--AIYDLA 316 (399)
T ss_pred cccceeEeccC-Cc--cEEEEccccceEEEecCCCCccccccchhhhhhhhhcccc-cccchhhcccccceE--EEEecc
Confidence 66665555554 33 3444555566655544321000001000011111221100 111133333345554 445777
Q ss_pred CCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 387 GHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 387 ~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
...+|.+-.....|..+ ... ...++.+.. ...++.+|..+|..
T Consensus 317 ~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~---~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 317 ASTLRHICEHEDGVTKLKWLN-TDYLLTACA---NGKVRQWDARTGQL 360 (399)
T ss_pred cchhheeccCCCceEEEEEcC-cchheeecc---CceEEeeeccccce
Confidence 77777777777778777 433 333333332 24678888777764
No 224
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=98.22 E-value=3.1e-05 Score=77.09 Aligned_cols=173 Identities=13% Similarity=0.112 Sum_probs=106.3
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecce-----------ecCCCCE-----------
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGI-----------FDPRFNR----------- 204 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~-----------~SPdG~~----------- 204 (729)
..+..+-|+.++|+...+..|-+|+...| .-.+.|... ...++..+ |.|-|++
T Consensus 250 VTCvrwGG~gliySgS~DrtIkvw~a~dG-~~~r~lkGH----ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 250 VTCVRWGGEGLIYSGSQDRTIKVWRALDG-KLCRELKGH----AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred eEEEEEcCCceEEecCCCceEEEEEccch-hHHHhhccc----chheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 34555556788898888888888887652 233444433 22333333 3344443
Q ss_pred --------------EEEEEeccCCCCCCcceEEEEEEcCC-C-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 205 --------------YVTVREDRRQDALNSTTEIVAIALNG-Q-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 205 --------------l~~~~~~~~~~~~~~~~~l~~~dl~~-g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
++-.+++ ..||+++..- . .+.+++....-.+...|||||++||-.++|.+
T Consensus 325 l~rY~~~~~~~~erlVSgsDd---------~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkS----- 390 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDD---------FTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKS----- 390 (480)
T ss_pred HHHHHHhhccCcceeEEecCC---------ceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccc-----
Confidence 3333322 4688887643 2 23456666667788999999999998886643
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRP 347 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~ 347 (729)
|.+++-. +|+. +..+.++- ..+..++||.|.+|++.... . ..|-+++..+.+...=.+ ...++...
T Consensus 391 ---VkLW~g~-tGk~--lasfRGHv----~~VYqvawsaDsRLlVS~Sk-D--sTLKvw~V~tkKl~~DLpGh~DEVf~v 457 (480)
T KOG0271|consen 391 ---VKLWDGR-TGKF--LASFRGHV----AAVYQVAWSADSRLLVSGSK-D--STLKVWDVRTKKLKQDLPGHADEVFAV 457 (480)
T ss_pred ---eeeeeCC-Ccch--hhhhhhcc----ceeEEEEeccCccEEEEcCC-C--ceEEEEEeeeeeecccCCCCCceEEEE
Confidence 5555555 6765 55666665 66788999999997766544 2 445566666666544332 33455556
Q ss_pred cccc
Q 004816 348 LWVF 351 (729)
Q Consensus 348 ~w~~ 351 (729)
.|++
T Consensus 458 Dwsp 461 (480)
T KOG0271|consen 458 DWSP 461 (480)
T ss_pred EecC
Confidence 6776
No 225
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0016 Score=63.87 Aligned_cols=249 Identities=14% Similarity=0.068 Sum_probs=134.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc--eEEEECCEEEEEEC-CC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG--AFRIFGDTVIFSNY-KD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~-~~ 164 (729)
..+.++.+++ |..+.-.. ++...+||-...+ .....+... .||.. .|.-....++..+. .+
T Consensus 15 ~~i~sl~fs~~G~~litss----~dDsl~LYd~~~g---~~~~ti~sk--------kyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSS----EDDSLRLYDSLSG---KQVKTINSK--------KYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CceeEEEecCCCCEEEEec----CCCeEEEEEcCCC---ceeeEeecc--------cccccEEEEecCCceEEEccCCCC
Confidence 4677889997 55554422 3445566654333 333333221 24443 33333445555544 23
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
..|-.+++.++ +-.|-...+ ..++...+.||-+...+-.+.+ ..|.++|+...+.+-+..-.. ..
T Consensus 80 ~tIryLsl~dN-kylRYF~GH----~~~V~sL~~sP~~d~FlS~S~D---------~tvrLWDlR~~~cqg~l~~~~-~p 144 (311)
T KOG1446|consen 80 DTIRYLSLHDN-KYLRYFPGH----KKRVNSLSVSPKDDTFLSSSLD---------KTVRLWDLRVKKCQGLLNLSG-RP 144 (311)
T ss_pred CceEEEEeecC-ceEEEcCCC----CceEEEEEecCCCCeEEecccC---------CeEEeeEecCCCCceEEecCC-Cc
Confidence 47888888762 334444444 6788999999988754333332 358888988665554433221 12
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC--CCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCc
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 321 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~--~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~ 321 (729)
-++++|.|=.+|... + ...|.++|+.. .|......+..+.. .....+.|||||+ ++..++.
T Consensus 145 i~AfDp~GLifA~~~--~------~~~IkLyD~Rs~dkgPF~tf~i~~~~~----~ew~~l~FS~dGK~iLlsT~~---- 208 (311)
T KOG1446|consen 145 IAAFDPEGLIFALAN--G------SELIKLYDLRSFDKGPFTTFSITDNDE----AEWTDLEFSPDGKSILLSTNA---- 208 (311)
T ss_pred ceeECCCCcEEEEec--C------CCeEEEEEecccCCCCceeEccCCCCc----cceeeeEEcCCCCEEEEEeCC----
Confidence 358999996444332 2 12588888862 23222222222222 2235789999999 5555443
Q ss_pred eEEEEEEcCCCeEEEeecc-CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeecc
Q 004816 322 WNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~ 395 (729)
..++++|.=+|....-..+ ......+ -+..|.| |+ .+++....+|..++|.+ ++|.......
T Consensus 209 s~~~~lDAf~G~~~~tfs~~~~~~~~~------~~a~ftP---ds-~Fvl~gs~dg~i~vw~~--~tg~~v~~~~ 271 (311)
T KOG1446|consen 209 SFIYLLDAFDGTVKSTFSGYPNAGNLP------LSATFTP---DS-KFVLSGSDDGTIHVWNL--ETGKKVAVLR 271 (311)
T ss_pred CcEEEEEccCCcEeeeEeeccCCCCcc------eeEEECC---CC-cEEEEecCCCcEEEEEc--CCCcEeeEec
Confidence 3477778767764432221 1111111 1223442 44 56677777898888865 5665544433
No 226
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.20 E-value=8e-05 Score=71.40 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=100.0
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
++..+++...++.|.+||+.+ ++.++...+. ...+...++|||.++|+--+.+ ..|-+++.-++-.
T Consensus 74 dg~~alS~swD~~lrlWDl~~--g~~t~~f~GH---~~dVlsva~s~dn~qivSGSrD---------kTiklwnt~g~ck 139 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLAT--GESTRRFVGH---TKDVLSVAFSTDNRQIVSGSRD---------KTIKLWNTLGVCK 139 (315)
T ss_pred CCceEEeccccceEEEEEecC--CcEEEEEEec---CCceEEEEecCCCceeecCCCc---------ceeeeeeecccEE
Confidence 335667777788999999998 6555444331 4667889999999998655443 3477778876655
Q ss_pred EEeeeC--CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 234 QVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 234 ~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
-.+..+ .++.+-.+|||...-...++... ...+-++|+. +-++ ...+.++. .++..+..||||.+
T Consensus 140 ~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~------DktvKvWnl~-~~~l--~~~~~gh~----~~v~t~~vSpDGsl 206 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPNESNPIIVSASW------DKTVKVWNLR-NCQL--RTTFIGHS----GYVNTVTVSPDGSL 206 (315)
T ss_pred EEEecCCCcCcEEEEEEcCCCCCcEEEEccC------CceEEEEccC-Ccch--hhcccccc----ccEEEEEECCCCCE
Confidence 555554 56788899999854444444221 2348888887 5444 44556665 78889999999985
Q ss_pred EEEEecCCCceEEEEEEcCCCeE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
...... . ..++++|++.++.
T Consensus 207 casGgk-d--g~~~LwdL~~~k~ 226 (315)
T KOG0279|consen 207 CASGGK-D--GEAMLWDLNEGKN 226 (315)
T ss_pred EecCCC-C--ceEEEEEccCCce
Confidence 433322 3 3566667766654
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.19 E-value=0.00037 Score=69.27 Aligned_cols=99 Identities=11% Similarity=0.114 Sum_probs=61.5
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE-c
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA-L 228 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d-l 228 (729)
|..++..++=.+..+..|.+||+++ +...+|.... ...+.-..|||||..+++.+-+. ...||-.. .
T Consensus 203 wn~dgt~l~tAS~gsssi~iWdpdt--g~~~pL~~~g---lgg~slLkwSPdgd~lfaAt~da-------vfrlw~e~q~ 270 (445)
T KOG2139|consen 203 WNEDGTILVTASFGSSSIMIWDPDT--GQKIPLIPKG---LGGFSLLKWSPDGDVLFAATCDA-------VFRLWQENQS 270 (445)
T ss_pred EcCCCCEEeecccCcceEEEEcCCC--CCcccccccC---CCceeeEEEcCCCCEEEEecccc-------eeeeehhccc
Confidence 3334445544455566899999998 7666666321 23456789999999877765543 12333111 1
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHH 262 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~ 262 (729)
-+. ++.++ +.+.....+|||+|+.|.|+....
T Consensus 271 wt~-erw~l-gsgrvqtacWspcGsfLLf~~sgs 302 (445)
T KOG2139|consen 271 WTK-ERWIL-GSGRVQTACWSPCGSFLLFACSGS 302 (445)
T ss_pred cee-cceec-cCCceeeeeecCCCCEEEEEEcCC
Confidence 112 22222 344778899999999999987544
No 228
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.17 E-value=9.6e-05 Score=74.00 Aligned_cols=181 Identities=17% Similarity=0.206 Sum_probs=106.9
Q ss_pred CCCCCcEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-----cchhhhHHHhhCCcEEEEe
Q 004816 453 SYFSLPELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-----ILNLSIQYWTSRGWAFVDV 527 (729)
Q Consensus 453 ~~~~~~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-----~~~~~~~~la~~G~~v~~~ 527 (729)
........+.++. |+..+.+....-++ .+....||+.-|........ ....+.......|.+|+.+
T Consensus 107 ~~~~~~kRv~Iq~--D~~~IDt~~I~~~~-------a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~~aNvl~f 177 (365)
T PF05677_consen 107 DEVSSVKRVPIQY--DGVKIDTMAIHQPE-------AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKELGANVLVF 177 (365)
T ss_pred ccccceeeEEEee--CCEEEEEEEeeCCC-------CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHcCCcEEEE
Confidence 3444567777877 89998877765322 23445788887753222111 1123444555679999999
Q ss_pred cCCCCCCC-chhHHHhhccCCCcccHHHHHHHHHHHHhCC-CCCCCcEEEEEcChHHHHHHHHHh-C----CCcceEE-E
Q 004816 528 NYGGSTGY-GREFRERLLGRWGIVDVNDCCSCATFLVGSG-KADEKRLCITGGSAGGYTTLAALA-F----RDTFKAG-A 599 (729)
Q Consensus 528 d~rGs~g~-g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~----~~~~~a~-v 599 (729)
||||-+-+ |..-.+ ..+.|..++++||+++. .+.+++|++.|||.||.++..++. + .+-++-. |
T Consensus 178 NYpGVg~S~G~~s~~--------dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~~~~~dgi~~~~i 249 (365)
T PF05677_consen 178 NYPGVGSSTGPPSRK--------DLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEVLKGSDGIRWFLI 249 (365)
T ss_pred CCCccccCCCCCCHH--------HHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcccccCCCeeEEEE
Confidence 99985432 222111 23788999999999753 467899999999999999887765 2 2234423 3
Q ss_pred EeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCC
Q 004816 600 SLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLE 655 (729)
Q Consensus 600 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~ 655 (729)
-.-++.++.......-.....++-.+.+ +..+.....+++.||=+++|+.+
T Consensus 250 kDRsfssl~~vas~~~~~~~~~l~~l~g-----WnidS~K~s~~l~cpeIii~~~d 300 (365)
T PF05677_consen 250 KDRSFSSLAAVASQFFGPIGKLLIKLLG-----WNIDSAKNSEKLQCPEIIIYGVD 300 (365)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHHHhc-----cCCCchhhhccCCCCeEEEeccc
Confidence 3345555544332211111111111111 12234445567789999998864
No 229
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.17 E-value=2.8e-05 Score=77.03 Aligned_cols=207 Identities=14% Similarity=0.082 Sum_probs=113.5
Q ss_pred EEEEEcCCCCCCccccchhhhHHHh-hCCcE----EEEecCCCCCCCchhHHHh----h---ccCCCc-----ccHHHHH
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWT-SRGWA----FVDVNYGGSTGYGREFRER----L---LGRWGI-----VDVNDCC 556 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la-~~G~~----v~~~d~rGs~g~g~~~~~~----~---~~~~~~-----~~~~D~~ 556 (729)
..|++||. +.....+..+++.+. ..|.+ ++.++--|.--+...+... . .-.... ....=+.
T Consensus 13 PTifihG~--~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl~ 90 (255)
T PF06028_consen 13 PTIFIHGY--GGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWLK 90 (255)
T ss_dssp EEEEE--T--TGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHHH
T ss_pred cEEEECCC--CCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHHH
Confidence 46778997 444677888888887 66643 4555544422111111110 0 001111 1244567
Q ss_pred HHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-C-----CCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChh
Q 004816 557 SCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-F-----RDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEK 630 (729)
Q Consensus 557 ~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~-----~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 630 (729)
.++.+|.++..+ +++-++||||||..++.++. + -+.+...|.+++.++-.................+....+
T Consensus 91 ~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~~~~~~~~~~~~~~~~gp~~~~~ 168 (255)
T PF06028_consen 91 KVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGILGMNDDQNQNDLNKNGPKSMTP 168 (255)
T ss_dssp HHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTTTCCSC-TTTT-CSTT-BSS--H
T ss_pred HHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCccccccccchhhhhcccCCcccCH
Confidence 888899888665 69999999999999998875 2 236788888888766432211000000000000000112
Q ss_pred hhhhcCcc--cccCCCCCCEEEEEeC------CCCCCChHHHHHHHHHHHhCCCCEEEEEECC--CCcccCCcccHHHHH
Q 004816 631 DYYEKSPI--NFVDKFSCPIILFQGL------EDKVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKAENIKFTL 700 (729)
Q Consensus 631 ~~~~~sp~--~~~~~i~~PvL~i~G~------~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~~~~~~~~ 700 (729)
.|...-.. .++ .-...+|-|.|. .|..||...++.+.-.++......+-+++.| +.|.-. .++ .+..
T Consensus 169 ~y~~l~~~~~~~~-p~~i~VLnI~G~~~~g~~sDG~V~~~Ss~sl~~L~~~~~~~Y~e~~v~G~~a~HS~L-heN-~~V~ 245 (255)
T PF06028_consen 169 MYQDLLKNRRKNF-PKNIQVLNIYGDLEDGSNSDGIVPNASSLSLRYLLKNRAKSYQEKTVTGKDAQHSQL-HEN-PQVD 245 (255)
T ss_dssp HHHHHHHTHGGGS-TTT-EEEEEEEESBTTCSBTSSSBHHHHCTHHHHCTTTSSEEEEEEEESGGGSCCGG-GCC-HHHH
T ss_pred HHHHHHHHHHhhC-CCCeEEEEEecccCCCCCCCeEEeHHHHHHHHHHhhcccCceEEEEEECCCCccccC-CCC-HHHH
Confidence 22221111 011 113569999998 8899999999999888888777777778876 478632 233 3555
Q ss_pred HHHHHHH
Q 004816 701 EQQMVFF 707 (729)
Q Consensus 701 ~~~~~fl 707 (729)
+.|.+||
T Consensus 246 ~~I~~FL 252 (255)
T PF06028_consen 246 KLIIQFL 252 (255)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6677776
No 230
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=0.0002 Score=70.06 Aligned_cols=179 Identities=13% Similarity=0.090 Sum_probs=102.5
Q ss_pred CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCC-c
Q 004816 88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ-R 166 (729)
Q Consensus 88 ~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~ 166 (729)
.+.+..+..+|.+..|-... .++...||-.... +-+-+.... +....+.+++.++|.....+ .
T Consensus 100 ~~~V~sL~~sP~~d~FlS~S---~D~tvrLWDlR~~---~cqg~l~~~----------~~pi~AfDp~GLifA~~~~~~~ 163 (311)
T KOG1446|consen 100 KKRVNSLSVSPKDDTFLSSS---LDKTVRLWDLRVK---KCQGLLNLS----------GRPIAAFDPEGLIFALANGSEL 163 (311)
T ss_pred CceEEEEEecCCCCeEEecc---cCCeEEeeEecCC---CCceEEecC----------CCcceeECCCCcEEEEecCCCe
Confidence 56677888888334444332 3456667765433 222222111 12233444445555544443 7
Q ss_pred EEEEeCCC-CCCCCe--ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC---
Q 004816 167 LYKHSIDS-KDSSPL--PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--- 240 (729)
Q Consensus 167 l~~~d~~~-~~~~~~--~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--- 240 (729)
|.++|+.. +.|.-+ .++.. ...+..+..|||||+.|+..... +.++++|.=.|....-..+.
T Consensus 164 IkLyD~Rs~dkgPF~tf~i~~~---~~~ew~~l~FS~dGK~iLlsT~~---------s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 164 IKLYDLRSFDKGPFTTFSITDN---DEAEWTDLEFSPDGKSILLSTNA---------SFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred EEEEEecccCCCCceeEccCCC---CccceeeeEEcCCCCEEEEEeCC---------CcEEEEEccCCcEeeeEeeccCC
Confidence 88999864 102212 22221 24567899999999998776543 56899998888765433222
Q ss_pred -CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 241 -DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 241 -~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
......+|+|||+.|.-.+ ++..|++++++ +|.. +..+.+.. . ....-+.|.|-
T Consensus 232 ~~~~~~a~ftPds~Fvl~gs--------~dg~i~vw~~~-tg~~--v~~~~~~~-~--~~~~~~~fnP~ 286 (311)
T KOG1446|consen 232 GNLPLSATFTPDSKFVLSGS--------DDGTIHVWNLE-TGKK--VAVLRGPN-G--GPVSCVRFNPR 286 (311)
T ss_pred CCcceeEEECCCCcEEEEec--------CCCcEEEEEcC-CCcE--eeEecCCC-C--CCccccccCCc
Confidence 1224678999999876444 23559999998 7764 33333321 0 33455668884
No 231
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.14 E-value=0.0011 Score=66.52 Aligned_cols=215 Identities=15% Similarity=0.105 Sum_probs=120.8
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCC--CeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGS--DFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~--~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
|--+++.+|+...++++....+ .-++++|..+|+..+ +.... -++..-.|||||++|+.+..+... .
T Consensus 6 RgH~~a~~p~~~~avafaRRPG-------~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~---g 75 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPG-------TFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYET---G 75 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCC-------cEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCC---C
Confidence 4456788995444444443332 468899999998764 44433 356678999999999877755433 4
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec------CCCc---------eEEEEEEcCCC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR------KNGF---------WNLHKWIESNN 332 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~------~~g~---------~~l~~~d~~~g 332 (729)
...|-++|+. ....++.-+.... .....+.|.|||+ |++ .+- ..|. .+|..+|..+|
T Consensus 76 ~G~IgVyd~~--~~~~ri~E~~s~G----IGPHel~l~pDG~tLvV-ANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG 148 (305)
T PF07433_consen 76 RGVIGVYDAA--RGYRRIGEFPSHG----IGPHELLLMPDGETLVV-ANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG 148 (305)
T ss_pred cEEEEEEECc--CCcEEEeEecCCC----cChhhEEEcCCCCEEEE-EcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence 5679999987 3333344444443 6678899999998 554 322 0121 34777887888
Q ss_pred eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe-----EEEEEEECCCCceEeeccCC-------cce
Q 004816 333 EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR-----SYLGILDDFGHSLSLLDIPF-------TDI 400 (729)
Q Consensus 333 ~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~-----~~ly~~d~~~g~~~~lt~~~-------~~v 400 (729)
+...-.....+. -......+.+. .++.+++.....|. .-|++.. .++..+.+..+. ..+
T Consensus 149 ~ll~q~~Lp~~~----~~lSiRHLa~~----~~G~V~~a~Q~qg~~~~~~PLva~~~-~g~~~~~~~~p~~~~~~l~~Y~ 219 (305)
T PF07433_consen 149 ALLEQVELPPDL----HQLSIRHLAVD----GDGTVAFAMQYQGDPGDAPPLVALHR-RGGALRLLPAPEEQWRRLNGYI 219 (305)
T ss_pred ceeeeeecCccc----cccceeeEEec----CCCcEEEEEecCCCCCccCCeEEEEc-CCCcceeccCChHHHHhhCCce
Confidence 754322111000 01122333443 44556555554443 2344444 344455555432 235
Q ss_pred EEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 401 DNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 401 ~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
.++ ...++.+++.++... ..+.++|.++++..
T Consensus 220 gSIa~~~~g~~ia~tsPrG--g~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 220 GSIAADRDGRLIAVTSPRG--GRVAVWDAATGRLL 252 (305)
T ss_pred EEEEEeCCCCEEEEECCCC--CEEEEEECCCCCEe
Confidence 566 444555555555433 23556688888753
No 232
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.13 E-value=0.00048 Score=74.69 Aligned_cols=230 Identities=12% Similarity=0.077 Sum_probs=142.3
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
+|+.|+|-...-|+|-+|+..+ +.-.+-.. +...+......||||+.|+.-.++. .+-++|..+|-
T Consensus 318 tGDWiA~g~~klgQLlVweWqs---EsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDg---------KVKvWn~~Sgf 383 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQS---ESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDG---------KVKVWNTQSGF 383 (893)
T ss_pred cCCEEEEcCCccceEEEEEeec---cceeeecc--ccccceeeEEECCCCcEEEeccCCC---------cEEEEeccCce
Confidence 3777888766667899998875 22222221 0135567888999999988776654 47777887764
Q ss_pred eE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 233 IQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 233 ~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
.. ..++.....++..|+.+|+.|.-.+.| ..+..+|+. ... +-+.+....+ .....++-.|-|.|
T Consensus 384 C~vTFteHts~Vt~v~f~~~g~~llssSLD--------GtVRAwDlk-RYr--NfRTft~P~p---~QfscvavD~sGel 449 (893)
T KOG0291|consen 384 CFVTFTEHTSGVTAVQFTARGNVLLSSSLD--------GTVRAWDLK-RYR--NFRTFTSPEP---IQFSCVAVDPSGEL 449 (893)
T ss_pred EEEEeccCCCceEEEEEEecCCEEEEeecC--------CeEEeeeec-ccc--eeeeecCCCc---eeeeEEEEcCCCCE
Confidence 43 344455567889999999977655532 347778887 332 2344433321 33445556666877
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
++... .+...|++++.++|+...+.. .++.+.. +.|.+ .+. ++++...|...++|-+=-..+..
T Consensus 450 V~AG~--~d~F~IfvWS~qTGqllDiLsGHEgPVs~---------l~f~~---~~~-~LaS~SWDkTVRiW~if~s~~~v 514 (893)
T KOG0291|consen 450 VCAGA--QDSFEIFVWSVQTGQLLDILSGHEGPVSG---------LSFSP---DGS-LLASGSWDKTVRIWDIFSSSGTV 514 (893)
T ss_pred EEeec--cceEEEEEEEeecCeeeehhcCCCCccee---------eEEcc---ccC-eEEeccccceEEEEEeeccCcee
Confidence 76654 367899999999999887763 3322222 23332 444 56666677888888765555666
Q ss_pred EeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 391 SLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 391 ~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
+.|.-. .++..+ .++++.+.+.+.+ ++|-.+|.+.
T Consensus 515 Etl~i~-sdvl~vsfrPdG~elaVaTld----gqItf~d~~~ 551 (893)
T KOG0291|consen 515 ETLEIR-SDVLAVSFRPDGKELAVATLD----GQITFFDIKE 551 (893)
T ss_pred eeEeec-cceeEEEEcCCCCeEEEEEec----ceEEEEEhhh
Confidence 666542 234444 5666666665543 2444444443
No 233
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.13 E-value=9.3e-05 Score=74.75 Aligned_cols=194 Identities=16% Similarity=0.232 Sum_probs=110.2
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHh---hCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHH----HHHHHHHHh
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWT---SRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDC----CSCATFLVG 564 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la---~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~----~~~~~~l~~ 564 (729)
.++|+++.|.|+.. ..|..+...|. ...|.|+++.+.|.......-... .+......+|. .+.++.++.
T Consensus 2 ~~li~~IPGNPGlv--~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~--~~~~~~sL~~QI~hk~~~i~~~~~ 77 (266)
T PF10230_consen 2 RPLIVFIPGNPGLV--EFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFS--PNGRLFSLQDQIEHKIDFIKELIP 77 (266)
T ss_pred cEEEEEECCCCChH--HHHHHHHHHHHHhCCCCCeeEEecCCCCcCCccccccc--CCCCccCHHHHHHHHHHHHHHHhh
Confidence 36899999988753 34555555554 348999999998754432220000 11111223333 334444444
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh-CC---CcceEEEEeccccC-hhH------Hhh---h-----------------
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA-FR---DTFKAGASLYGVAD-LSM------LRA---E----------------- 613 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~-~~---~~~~a~v~~~~~~d-~~~------~~~---~----------------- 613 (729)
.......++.++|||.|+|+++.++. .+ .+++.++.+.|... +.. +.. .
T Consensus 78 ~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~~ia~Sp~G~~l~~~~~~~~~~~~~~~~~~~l~~~ 157 (266)
T PF10230_consen 78 QKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIEDIAKSPNGRRLTPLLFSPPPLVWLASFLSFLLSL 157 (266)
T ss_pred hhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccccccCCchhHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 32224578999999999999999998 66 68889998887531 110 000 0
Q ss_pred cchhhhhh-hhhhcC--------------Ch-----------hhhhhc--Cc-ccccCCC---CCCEEEEEeCCCCCCCh
Q 004816 614 THKFESRY-IDNLVG--------------SE-----------KDYYEK--SP-INFVDKF---SCPIILFQGLEDKVVPP 661 (729)
Q Consensus 614 ~~~~~~~~-~~~~~~--------------~~-----------~~~~~~--sp-~~~~~~i---~~PvL~i~G~~D~~vp~ 661 (729)
.+.....+ .....+ ++ +.+..- .. ....+.. ...+.++.|.+|.-||.
T Consensus 158 lP~~~~~~lv~~~~~~~~~~~~~t~~~l~~~~~v~qaL~Ma~~Em~~I~~~d~~~~~~~~~~~~~kl~f~fg~~D~Wvp~ 237 (266)
T PF10230_consen 158 LPESVLRWLVRWVMGFPPPAVEATTKFLLSPRVVRQALYMARDEMREIREDDNDELIKHHNENGDKLWFYFGQNDHWVPN 237 (266)
T ss_pred CCHHHHHHHHHHHcCCChHHHHHHHHHhcCHHHHHHHHHHHHHHHHHccCcchHHHHHHhccCCCEEEEEEeCCCCCCCH
Confidence 00000000 000001 00 001000 00 0111112 46789999999999999
Q ss_pred HHHHHHHHHHHhCCCCEEEEEECCCCccc
Q 004816 662 DQARKIYKALKENGLPVALVEYEGEQHGF 690 (729)
Q Consensus 662 ~~~~~~~~~l~~~g~~~~~~~~~~~gH~~ 690 (729)
+..+++.+.+......+.+.+ ++-.|.|
T Consensus 238 ~~~~~l~~~~~~~~~~~~v~~-~~i~HaF 265 (266)
T PF10230_consen 238 ETRDELIERYPGHEPDVVVDE-EGIPHAF 265 (266)
T ss_pred HHHHHHHHHcCCCCCeEEEec-CCCCCCC
Confidence 999999888886545566666 7888876
No 234
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.13 E-value=1.1e-05 Score=79.32 Aligned_cols=135 Identities=16% Similarity=0.161 Sum_probs=94.2
Q ss_pred EEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCC-ch
Q 004816 459 ELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGY-GR 537 (729)
Q Consensus 459 ~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~-g~ 537 (729)
+...+.+. ||.++...+....... .+...-+|+++.|..+.- .- ..+.--++.||.|+-.|.+|-.|+ |.
T Consensus 215 ~R~kiks~-dgneiDtmF~d~r~n~----~~ngq~LvIC~EGNAGFY-Ev---G~m~tP~~lgYsvLGwNhPGFagSTG~ 285 (517)
T KOG1553|consen 215 QRLKIKSS-DGNEIDTMFLDGRPNQ----SGNGQDLVICFEGNAGFY-EV---GVMNTPAQLGYSVLGWNHPGFAGSTGL 285 (517)
T ss_pred eEEEEeec-CCcchhheeecCCCCC----CCCCceEEEEecCCccce-Ee---eeecChHHhCceeeccCCCCccccCCC
Confidence 56777777 8988887776543211 123345788887752211 11 122333677999999999876553 22
Q ss_pred hHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHh
Q 004816 538 EFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLR 611 (729)
Q Consensus 538 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~ 611 (729)
.+ ..++..-+.+++++.++.-....+.|++.|+|-||+.+.+++. +|+ ++++|+.+.+-|+..+.
T Consensus 286 P~--------p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-VkavvLDAtFDDllpLA 351 (517)
T KOG1553|consen 286 PY--------PVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKAVVLDATFDDLLPLA 351 (517)
T ss_pred CC--------cccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceEEEeecchhhhhhHH
Confidence 21 2244566777888888886677899999999999999999998 886 89999999888776543
No 235
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.11 E-value=9.7e-05 Score=69.16 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=83.3
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
..|.+|...+|||++...++.+.+..-..-...||++-+ ++++..+...-+..++..|+-|-|+.+|+....
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~-~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln------- 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLA-GHQVELIWNCVGISNGLAWDSDAKKFYYIDSLN------- 179 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEecc-CCCceeeehhccCCccccccccCcEEEEEccCc-------
Confidence 478899999999999777776655433233466777554 577777776666778899999999999987432
Q ss_pred cEE--EEEEecCCCCeeeeEEecCCC---CCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 270 AEL--WVGYISENGDVYKRVCVAGFD---PTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 270 ~~l--~~~d~~~~g~~~~~~~~~~~~---~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
-++ |-+|.. +|.+.+++.+-+.. +.-..-....+...+|.|+...-. ...++++|+.+|+..
T Consensus 180 ~~V~a~dyd~~-tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n---g~~V~~~dp~tGK~L 246 (310)
T KOG4499|consen 180 YEVDAYDYDCP-TGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN---GGTVQKVDPTTGKIL 246 (310)
T ss_pred eEEeeeecCCC-cccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec---CcEEEEECCCCCcEE
Confidence 335 666677 77665443322211 000011223444444444444332 246889999998754
No 236
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.09 E-value=0.00032 Score=66.30 Aligned_cols=186 Identities=10% Similarity=0.058 Sum_probs=114.5
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-e
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-I 233 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~ 233 (729)
++-.|+..++|.+-+||+.. -...++-.. ...++.....|+-..|+ +.+.. .+|+++|+.... .
T Consensus 95 grWMyTgseDgt~kIWdlR~--~~~qR~~~~----~spVn~vvlhpnQteLi-s~dqs--------g~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRS--LSCQRNYQH----NSPVNTVVLHPNQTELI-SGDQS--------GNIRVWDLGENSCT 159 (311)
T ss_pred CeEEEecCCCceEEEEeccC--cccchhccC----CCCcceEEecCCcceEE-eecCC--------CcEEEEEccCCccc
Confidence 35667778889899999876 445555444 23467888999777654 43332 579999997653 3
Q ss_pred EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC----eeeeEEecCCCCCccccccCceeCCC
Q 004816 234 QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD----VYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 234 ~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~----~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
++|.+ ...+.......|||++|+-+. +....|++++- ++. +.++..+.... .++..-.+|||
T Consensus 160 ~~liPe~~~~i~sl~v~~dgsml~a~n--------nkG~cyvW~l~-~~~~~s~l~P~~k~~ah~----~~il~C~lSPd 226 (311)
T KOG0315|consen 160 HELIPEDDTSIQSLTVMPDGSMLAAAN--------NKGNCYVWRLL-NHQTASELEPVHKFQAHN----GHILRCLLSPD 226 (311)
T ss_pred cccCCCCCcceeeEEEcCCCcEEEEec--------CCccEEEEEcc-CCCccccceEhhheeccc----ceEEEEEECCC
Confidence 45554 445677889999999998655 23448888886 332 22333344444 66677889999
Q ss_pred CcEEEEEecCCCceEEEEEEcCCC-e-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNN-E-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g-~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
++.+.++.. ...-.|| +.++- + .++|+... .-.| +..|. .++.++++.+.++..+||-+.
T Consensus 227 ~k~lat~ss-dktv~iw--n~~~~~kle~~l~gh~----rWvW-----dc~FS----~dg~YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 227 VKYLATCSS-DKTVKIW--NTDDFFKLELVLTGHQ----RWVW-----DCAFS----ADGEYLVTASSDHTARLWDLS 288 (311)
T ss_pred CcEEEeecC-CceEEEE--ecCCceeeEEEeecCC----ceEE-----eeeec----cCccEEEecCCCCceeecccc
Confidence 994434333 2334444 44443 2 23333222 1233 34555 445566777778888998654
No 237
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=98.09 E-value=0.00016 Score=72.32 Aligned_cols=203 Identities=14% Similarity=0.069 Sum_probs=119.3
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|+||++ |.. +........+.+.+.+.|+.++.+-.+-. .-.... .....-+...++.+.+....+..+
T Consensus 1 plvvl~-gW~-gA~~~hl~KY~~~Y~~~g~~il~~~~~~~--------~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~ 68 (240)
T PF05705_consen 1 PLVVLL-GWM-GAKPKHLAKYSDLYQDPGFDILLVTSPPA--------DFFWPS--KRLAPAADKLLELLSDSQSASPPP 68 (240)
T ss_pred CEEEEE-eCC-CCCHHHHHHHHHHHHhcCCeEEEEeCCHH--------HHeeec--cchHHHHHHHHHHhhhhccCCCCC
Confidence 455554 543 33334455567777789999999876421 111110 011122233444554443333348
Q ss_pred EEEEEcChHHHHHHHHHh---C--------CCcceEEEEeccccChh------HHhhhcchhh-------hhhhhhh---
Q 004816 573 LCITGGSAGGYTTLAALA---F--------RDTFKAGASLYGVADLS------MLRAETHKFE-------SRYIDNL--- 625 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~---~--------~~~~~a~v~~~~~~d~~------~~~~~~~~~~-------~~~~~~~--- 625 (729)
|.+..+|.||...+..+. + -+++++.|..++..... .+........ .......
T Consensus 69 il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (240)
T PF05705_consen 69 ILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCPGIPTYSSSARAFSAALPKSSPRWFVPLWPLLQFLLRL 148 (240)
T ss_pred EEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCCCccccccHHHHHHHHcCccchhhHHHHHHHHHHHHHH
Confidence 999999998877755432 1 12378888777653221 1111111110 0000000
Q ss_pred -------cC--C-hhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCccc
Q 004816 626 -------VG--S-EKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAEN 695 (729)
Q Consensus 626 -------~~--~-~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~ 695 (729)
.. + ...+............++|-|++.++.|.+++.++.+++++..++.|.+++.+.|++..|.-....+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lylYS~~D~l~~~~~ve~~~~~~~~~G~~V~~~~f~~S~HV~H~r~~ 228 (240)
T PF05705_consen 149 SIISYFIFGYPDVQEYYRRALNDFANSPSRCPRLYLYSKADPLIPWRDVEEHAEEARRKGWDVRAEKFEDSPHVAHLRKH 228 (240)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhhhcCCCCCCeEEecCCCCcCcCHHHHHHHHHHHHHcCCeEEEecCCCCchhhhcccC
Confidence 00 1 1111111111123345689999999999999999999999999999999999999999998777777
Q ss_pred HHHHHHHHHHHH
Q 004816 696 IKFTLEQQMVFF 707 (729)
Q Consensus 696 ~~~~~~~~~~fl 707 (729)
.+++.+.+.+|+
T Consensus 229 p~~Y~~~v~~fw 240 (240)
T PF05705_consen 229 PDRYWRAVDEFW 240 (240)
T ss_pred HHHHHHHHHhhC
Confidence 888888887774
No 238
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.08 E-value=0.00013 Score=75.59 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=121.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCC-------cccCCCCCcccccccccCCceEEEECCEEEEE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEP-------SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS 160 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 160 (729)
-.++.++||| |+.+..+..... ..| ++.+|- +. +-+.+ -.+...-+....-++|.+.....+.+
T Consensus 215 h~i~sl~ys~Tg~~iLvvsg~aq----akl--~DRdG~-~~~e~~KGDQYI~D-m~nTKGHia~lt~g~whP~~k~~FlT 286 (641)
T KOG0772|consen 215 HQINSLQYSVTGDQILVVSGSAQ----AKL--LDRDGF-EIVEFSKGDQYIRD-MYNTKGHIAELTCGCWHPDNKEEFLT 286 (641)
T ss_pred cccceeeecCCCCeEEEEecCcc----eeE--EccCCc-eeeeeeccchhhhh-hhccCCceeeeeccccccCcccceEE
Confidence 3457899999 888887765332 122 222210 10 01110 00112222233345677776667777
Q ss_pred ECCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE--Eee
Q 004816 161 NYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ--VLV 237 (729)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~--~lt 237 (729)
...++.|-+|++.......+.+-... ++....+...+|+|||+.|+..+.+. .|-+++..+-..+ ...
T Consensus 287 ~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---------SIQ~W~~~~~~v~p~~~v 357 (641)
T KOG0772|consen 287 CSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---------SIQIWDKGSRTVRPVMKV 357 (641)
T ss_pred ecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---------ceeeeecCCcccccceEe
Confidence 77888888888764102222222211 11123346778999999988776653 3445555332111 111
Q ss_pred e----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 238 S----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 238 ~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
. +....+...||+||++|+--+.+ ..|-++|+. .-+ ..+....+.... ..-...+||||.+|++
T Consensus 358 k~AH~~g~~Itsi~FS~dg~~LlSRg~D--------~tLKvWDLr-q~k-kpL~~~tgL~t~--~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 358 KDAHLPGQDITSISFSYDGNYLLSRGFD--------DTLKVWDLR-QFK-KPLNVRTGLPTP--FPGTDCCFSPDDKLIL 425 (641)
T ss_pred eeccCCCCceeEEEeccccchhhhccCC--------Cceeeeecc-ccc-cchhhhcCCCcc--CCCCccccCCCceEEE
Confidence 1 22346778999999998754432 337788887 221 112111222100 1225678999999766
Q ss_pred EEecC-C--CceEEEEEEcCCCeE-EEeeccCccccCCcccc
Q 004816 314 VTDRK-N--GFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVF 351 (729)
Q Consensus 314 ~~~~~-~--g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~ 351 (729)
+.... + ....|+.+|..+-+. ..|.-....+..-.|.|
T Consensus 426 TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 426 TGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred ecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 54321 2 234688888766432 23321233333445655
No 239
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.06 E-value=0.0007 Score=65.47 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=90.7
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
..++|...-.+-.+++|.++. .++..+....+ ...+...+|||||++|+.+.++.. . .+..|=++|... ...
T Consensus 81 ravafARrPGtf~~vfD~~~~-~~pv~~~s~~~--RHfyGHGvfs~dG~~LYATEndfd-~---~rGViGvYd~r~-~fq 152 (366)
T COG3490 81 RAVAFARRPGTFAMVFDPNGA-QEPVTLVSQEG--RHFYGHGVFSPDGRLLYATENDFD-P---NRGVIGVYDARE-GFQ 152 (366)
T ss_pred ceEEEEecCCceEEEECCCCC-cCcEEEecccC--ceeecccccCCCCcEEEeecCCCC-C---CCceEEEEeccc-ccc
Confidence 356666544456788999873 44555554421 245688899999998766654432 1 245666677653 233
Q ss_pred EeeeCCCeee---eeeeCCCCCeEEEEEe---cCCCC---CC--C--CcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 235 VLVSGSDFYA---FPRMDPRGERMAWIEW---HHPNM---PW--D--KAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 235 ~lt~~~~~~~---~~~~SPDG~~la~~~~---~~~~~---~~--~--~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++-+-+.+-. ...|.+||+.|+.... .++.. +- + ...|.++|.. +|++-++..++..... .++.
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~a-tG~liekh~Lp~~l~~--lSiR 229 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAA-TGNLIEKHTLPASLRQ--LSIR 229 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEecc-ccchhhhccCchhhhh--ccee
Confidence 3322111112 3589999999987653 12111 11 1 2346777765 6776444455533212 5777
Q ss_pred CceeCCCCcEEEEEecCCC
Q 004816 302 EPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g 320 (729)
.+...+||+++|-.+. +|
T Consensus 230 Hld~g~dgtvwfgcQy-~G 247 (366)
T COG3490 230 HLDIGRDGTVWFGCQY-RG 247 (366)
T ss_pred eeeeCCCCcEEEEEEe-eC
Confidence 8889999998887776 44
No 240
>COG3150 Predicted esterase [General function prediction only]
Probab=98.06 E-value=6.1e-05 Score=66.88 Aligned_cols=179 Identities=16% Similarity=0.131 Sum_probs=90.0
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCC--cEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRG--WAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G--~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|+++||.-.+.....-..+.+++.+.+ ..+.++..+ .+...+.+-++-++++.. | +.
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~p~l~-------------------h~p~~a~~ele~~i~~~~-~-~~ 60 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYSTPHLP-------------------HDPQQALKELEKAVQELG-D-ES 60 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhccccceeeecCCCC-------------------CCHHHHHHHHHHHHHHcC-C-CC
Confidence 899999743332222233445555443 223333332 123445555555555422 2 34
Q ss_pred EEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-HHhhhcchhhhhhhhhhcC-ChhhhhhcCcccccCCCCCC-E
Q 004816 573 LCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-MLRAETHKFESRYIDNLVG-SEKDYYEKSPINFVDKFSCP-I 648 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~sp~~~~~~i~~P-v 648 (729)
++|+|.|.|||.|.+++. +. ++++ +++|..-.. .+.......+..|...-.- ........ -...+..++.| .
T Consensus 61 p~ivGssLGGY~At~l~~~~G--irav-~~NPav~P~e~l~gylg~~en~ytg~~y~le~~hI~~l-~~~~~~~l~~p~~ 136 (191)
T COG3150 61 PLIVGSSLGGYYATWLGFLCG--IRAV-VFNPAVRPYELLTGYLGRPENPYTGQEYVLESRHIATL-CVLQFRELNRPRC 136 (191)
T ss_pred ceEEeecchHHHHHHHHHHhC--Chhh-hcCCCcCchhhhhhhcCCCCCCCCcceEEeehhhHHHH-HHhhccccCCCcE
Confidence 999999999999999987 54 3443 344433221 1111111111011100000 00000000 01223344445 4
Q ss_pred EEEE-eCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 649 ILFQ-GLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 649 L~i~-G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
|++- -+.|.+.+..++.+.+.... ..+..|+.|.|.+ ....++.|..|..
T Consensus 137 ~~lL~qtgDEvLDyr~a~a~y~~~~-------~~V~dgg~H~F~~---f~~~l~~i~aF~g 187 (191)
T COG3150 137 LVLLSQTGDEVLDYRQAVAYYHPCY-------EIVWDGGDHKFKG---FSRHLQRIKAFKG 187 (191)
T ss_pred EEeecccccHHHHHHHHHHHhhhhh-------heeecCCCccccc---hHHhHHHHHHHhc
Confidence 4444 44488887777776666554 5577789999864 4577788888763
No 241
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.05 E-value=0.0011 Score=70.16 Aligned_cols=158 Identities=13% Similarity=0.109 Sum_probs=89.9
Q ss_pred EEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
++++.. +|+..+++.|-++|+.+. ...+++..+ ......++||||++++...... .++.++|.++
T Consensus 45 s~Dgr~-~yv~~rdg~vsviD~~~~-~~v~~i~~G-----~~~~~i~~s~DG~~~~v~n~~~--------~~v~v~D~~t 109 (369)
T PF02239_consen 45 SPDGRY-LYVANRDGTVSVIDLATG-KVVATIKVG-----GNPRGIAVSPDGKYVYVANYEP--------GTVSVIDAET 109 (369)
T ss_dssp TT-SSE-EEEEETTSEEEEEETTSS-SEEEEEE-S-----SEEEEEEE--TTTEEEEEEEET--------TEEEEEETTT
T ss_pred cCCCCE-EEEEcCCCeEEEEECCcc-cEEEEEecC-----CCcceEEEcCCCCEEEEEecCC--------CceeEecccc
Confidence 334444 444557889999999872 333445443 3446788999999876554432 5799999988
Q ss_pred CceEEeee-C-------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccC
Q 004816 231 QNIQVLVS-G-------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE 302 (729)
Q Consensus 231 g~~~~lt~-~-------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~ 302 (729)
.++....+ + .....+..-||+....++.- . +..+||++|.. +.+....+.+.- . ..+..
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l-k------d~~~I~vVdy~-d~~~~~~~~i~~-g----~~~~D 176 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL-K------DTGEIWVVDYS-DPKNLKVTTIKV-G----RFPHD 176 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE-T------TTTEEEEEETT-TSSCEEEEEEE-------TTEEE
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEE-c------cCCeEEEEEec-cccccceeeecc-c----ccccc
Confidence 77644322 1 11233445577777544443 2 23569999987 443212222222 1 34567
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
..|+|||+.++.+.. +...|..+|.++++...+.
T Consensus 177 ~~~dpdgry~~va~~--~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 177 GGFDPDGRYFLVAAN--GSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEE-TTSSEEEEEEG--GGTEEEEEETTTTEEEEEE
T ss_pred cccCcccceeeeccc--ccceeEEEeeccceEEEEe
Confidence 789999995555433 3347888999888776655
No 242
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.03 E-value=6.3e-06 Score=65.74 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=47.2
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCc
Q 004816 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYG 536 (729)
Q Consensus 469 G~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g 536 (729)
|.+|.+..|.|++ . ...+|+++||. ......|..+++.|+++||.|+++|+||.|.+.
T Consensus 1 G~~L~~~~w~p~~-------~-~k~~v~i~HG~--~eh~~ry~~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-------P-PKAVVVIVHGF--GEHSGRYAHLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CcEEEEEEecCCC-------C-CCEEEEEeCCc--HHHHHHHHHHHHHHHhCCCEEEEECCCcCCCCC
Confidence 5678888998866 2 56899999997 444457888999999999999999999866543
No 243
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.0037 Score=60.05 Aligned_cols=176 Identities=9% Similarity=0.070 Sum_probs=106.3
Q ss_pred ceeeecceecCC-CCEEEEEEeccCCCCCCcceEEEEEEcCCCc---eEEeeeC--CCeeeeeeeCCCCCeEEEEEecCC
Q 004816 190 LVSYADGIFDPR-FNRYVTVREDRRQDALNSTTEIVAIALNGQN---IQVLVSG--SDFYAFPRMDPRGERMAWIEWHHP 263 (729)
Q Consensus 190 ~~~~~~~~~SPd-G~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~---~~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~ 263 (729)
..|...++|+|- |. |+++.... ..|.+++..++. .+.++.+ .......+|||.|++||-.+++-.
T Consensus 14 ~~r~W~~awhp~~g~-ilAscg~D--------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 14 KDRVWSVAWHPGKGV-ILASCGTD--------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred CCcEEEEEeccCCce-EEEeecCC--------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 357788999997 66 56665443 346677776432 2222222 234567899999999998885532
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE---Eeecc
Q 004816 264 NMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL---AIYSL 340 (729)
Q Consensus 264 ~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~---~l~~~ 340 (729)
+-++.=. +++..-+..+++++ .-+-.++||++|.++.+..+ ...--||.++ ++++.. .|.+.
T Consensus 85 --------~~Iw~k~-~~efecv~~lEGHE----nEVK~Vaws~sG~~LATCSR-DKSVWiWe~d-eddEfec~aVL~~H 149 (312)
T KOG0645|consen 85 --------VVIWKKE-DGEFECVATLEGHE----NEVKCVAWSASGNYLATCSR-DKSVWIWEID-EDDEFECIAVLQEH 149 (312)
T ss_pred --------EEEeecC-CCceeEEeeeeccc----cceeEEEEcCCCCEEEEeeC-CCeEEEEEec-CCCcEEEEeeeccc
Confidence 3333323 56766677888887 66778899999994444444 2323344444 233333 33344
Q ss_pred CccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE---eeccCCcceEEe
Q 004816 341 DAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS---LLDIPFTDIDNI 403 (729)
Q Consensus 341 ~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~---~lt~~~~~v~~~ 403 (729)
..++-.-.|.| ..-|+++..-+....+|+-.. +..+. .|......+..+
T Consensus 150 tqDVK~V~WHP-------------t~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~ 201 (312)
T KOG0645|consen 150 TQDVKHVIWHP-------------TEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSL 201 (312)
T ss_pred cccccEEEEcC-------------CcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEE
Confidence 45555566764 344788888888888988765 44433 343333345555
No 244
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.96 E-value=0.0028 Score=61.14 Aligned_cols=226 Identities=9% Similarity=0.007 Sum_probs=131.1
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
.+.|.....+.|=.+|..+ |+.++..-+. +.+-..+...|||..++ .+.. ..|.++|.++.+.++
T Consensus 74 ~VWft~qg~gaiGhLdP~t--Gev~~ypLg~---Ga~Phgiv~gpdg~~Wi--td~~--------~aI~R~dpkt~evt~ 138 (353)
T COG4257 74 AVWFTAQGTGAIGHLDPAT--GEVETYPLGS---GASPHGIVVGPDGSAWI--TDTG--------LAIGRLDPKTLEVTR 138 (353)
T ss_pred ceEEecCccccceecCCCC--CceEEEecCC---CCCCceEEECCCCCeeE--ecCc--------ceeEEecCcccceEE
Confidence 4677766666788888888 7777665442 23335567899999543 3322 368899998888776
Q ss_pred ee--e--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 236 LV--S--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 236 lt--~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
.. . ..+....+.|.|+|+ |.|+....- --..|.. .+. +.++.... + .....++-.|||.+
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~--------yGrLdPa-~~~---i~vfpaPq-G--~gpyGi~atpdGsv 202 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGN-LWFTGQIGA--------YGRLDPA-RNV---ISVFPAPQ-G--GGPYGICATPDGSV 202 (353)
T ss_pred eecccccCCCcccceeeCCCcc-EEEeecccc--------ceecCcc-cCc---eeeeccCC-C--CCCcceEECCCCcE
Confidence 53 2 345567889999998 778773211 1122332 222 23333221 1 45567889999998
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCc--cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDA--EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~--~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
+|.+-. ...|.++|+.++...++...+. .-..-.|+ |...-+|.+ ..+...|+++|.....
T Consensus 203 wyasla---gnaiaridp~~~~aev~p~P~~~~~gsRriws-------------dpig~~wit-twg~g~l~rfdPs~~s 265 (353)
T COG4257 203 WYASLA---GNAIARIDPFAGHAEVVPQPNALKAGSRRIWS-------------DPIGRAWIT-TWGTGSLHRFDPSVTS 265 (353)
T ss_pred EEEecc---ccceEEcccccCCcceecCCCccccccccccc-------------CccCcEEEe-ccCCceeeEeCccccc
Confidence 887654 2458899998886666652221 11223455 333334444 3566789999998877
Q ss_pred eEeeccCCc--ceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 390 LSLLDIPFT--DIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 390 ~~~lt~~~~--~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.....+.. .-.++ +++-+++.+.-... ..|.++|..+..
T Consensus 266 W~eypLPgs~arpys~rVD~~grVW~sea~a---gai~rfdpeta~ 308 (353)
T COG4257 266 WIEYPLPGSKARPYSMRVDRHGRVWLSEADA---GAIGRFDPETAR 308 (353)
T ss_pred ceeeeCCCCCCCcceeeeccCCcEEeecccc---CceeecCcccce
Confidence 765443322 22333 33333443322222 245666655444
No 245
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.95 E-value=0.00092 Score=65.66 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=58.1
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
.++.-.+||+|...+.+.++ .--+.||++|+...+...+.-....+....|.|+. . ++++. .|.
T Consensus 319 ~g~g~lafs~Ds~y~aTrnd-~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~-----------p-rL~vc---tg~ 382 (447)
T KOG4497|consen 319 CGAGKLAFSCDSTYAATRND-KYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGR-----------P-RLVVC---TGK 382 (447)
T ss_pred cccceeeecCCceEEeeecC-CCCceEEEEechhhhhhhhhhhccceeEEEeCCCC-----------c-eEEEE---cCC
Confidence 34556789999876656655 44567999999877666555444445566787642 2 23322 366
Q ss_pred EEEEEEECCCCceEeeccCCcceEEe
Q 004816 378 SYLGILDDFGHSLSLLDIPFTDIDNI 403 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt~~~~~v~~~ 403 (729)
.+||...+.+-....+......|..+
T Consensus 383 srLY~W~psg~~~V~vP~~GF~i~~l 408 (447)
T KOG4497|consen 383 SRLYFWAPSGPRVVGVPKKGFNIQKL 408 (447)
T ss_pred ceEEEEcCCCceEEecCCCCceeeeE
Confidence 78999988776655665555566666
No 246
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.94 E-value=0.0045 Score=59.19 Aligned_cols=217 Identities=7% Similarity=-0.055 Sum_probs=115.0
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
...++++...+..+.+||... ++...-+... ..-....|||||+++++...++ .|-.+|..+-++
T Consensus 76 ~~d~~atas~dk~ir~wd~r~--~k~~~~i~~~----~eni~i~wsp~g~~~~~~~kdD---------~it~id~r~~~~ 140 (313)
T KOG1407|consen 76 HPDLFATASGDKTIRIWDIRS--GKCTARIETK----GENINITWSPDGEYIAVGNKDD---------RITFIDARTYKI 140 (313)
T ss_pred CCcceEEecCCceEEEEEecc--CcEEEEeecc----CcceEEEEcCCCCEEEEecCcc---------cEEEEEecccce
Confidence 334566666677888999877 5554443331 1124568999999988875543 477777765433
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 312 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~ 312 (729)
..-.+-..+.....|+-++. +.|+... ...+-++... .+.++..+..+. ...--+.++|||+ ++
T Consensus 141 ~~~~~~~~e~ne~~w~~~nd-~Fflt~G-------lG~v~ILsyp---sLkpv~si~AH~----snCicI~f~p~GryfA 205 (313)
T KOG1407|consen 141 VNEEQFKFEVNEISWNNSND-LFFLTNG-------LGCVEILSYP---SLKPVQSIKAHP----SNCICIEFDPDGRYFA 205 (313)
T ss_pred eehhcccceeeeeeecCCCC-EEEEecC-------CceEEEEecc---ccccccccccCC----cceEEEEECCCCceEe
Confidence 22222233455678886655 7777632 1234444433 233344454444 3334568999999 44
Q ss_pred EEEecCCCceEEEEEEcCCC-eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 313 FVTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
.-+.+ . .+-++|++.- -.+.++..+..+ ..+.|. -+++++.+..++-...|..+.. |.++.
T Consensus 206 ~GsAD--A--lvSLWD~~ELiC~R~isRldwpV---------RTlSFS----~dg~~lASaSEDh~IDIA~vet-Gd~~~ 267 (313)
T KOG1407|consen 206 TGSAD--A--LVSLWDVDELICERCISRLDWPV---------RTLSFS----HDGRMLASASEDHFIDIAEVET-GDRVW 267 (313)
T ss_pred ecccc--c--eeeccChhHhhhheeeccccCce---------EEEEec----cCcceeeccCccceEEeEeccc-CCeEE
Confidence 43332 2 2334455432 133444333222 334444 3445555666677777765532 33455
Q ss_pred eeccCCcceEEeeeeCCEEEEEEeCCC
Q 004816 392 LLDIPFTDIDNITLGNDCLFVEGASGV 418 (729)
Q Consensus 392 ~lt~~~~~v~~~~~~~~~~~~~~~~~~ 418 (729)
+|........-...+...++.++.+..
T Consensus 268 eI~~~~~t~tVAWHPk~~LLAyA~ddk 294 (313)
T KOG1407|consen 268 EIPCEGPTFTVAWHPKRPLLAYACDDK 294 (313)
T ss_pred EeeccCCceeEEecCCCceeeEEecCC
Confidence 665433222222555565665555443
No 247
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.94 E-value=0.0083 Score=71.23 Aligned_cols=143 Identities=8% Similarity=0.049 Sum_probs=86.1
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecC-CCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
...+++...++.|.+||+.+ ++ ...+... ...+....|+| ||..|+....+ ..|.++|+.++.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~--~~~~~~~~~H----~~~V~~l~~~p~~~~~L~Sgs~D---------g~v~iWd~~~~~ 609 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVAR--SQLVTEMKEH----EKRVWSIDYSSADPTLLASGSDD---------GSVKLWSINQGV 609 (793)
T ss_pred CCEEEEEeCCCeEEEEECCC--CeEEEEecCC----CCCEEEEEEcCCCCCEEEEEcCC---------CEEEEEECCCCc
Confidence 45566777788999999986 43 3333333 34567888997 77765544432 468888998776
Q ss_pred eEEeeeCCCeeeeeee-CCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 233 IQVLVSGSDFYAFPRM-DPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~-SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
...............| +++|+.|+..+. ...|+++|+. ++.. ....+.+.. ..+..+.|. |+..
T Consensus 610 ~~~~~~~~~~v~~v~~~~~~g~~latgs~--------dg~I~iwD~~-~~~~-~~~~~~~h~----~~V~~v~f~-~~~~ 674 (793)
T PLN00181 610 SIGTIKTKANICCVQFPSESGRSLAFGSA--------DHKVYYYDLR-NPKL-PLCTMIGHS----KTVSYVRFV-DSST 674 (793)
T ss_pred EEEEEecCCCeEEEEEeCCCCCEEEEEeC--------CCeEEEEECC-CCCc-cceEecCCC----CCEEEEEEe-CCCE
Confidence 5433333334455677 568998886652 3459999987 4431 123334443 455677886 6664
Q ss_pred EEEEecCCCceEEEEEEcC
Q 004816 312 FFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~ 330 (729)
+++... .+.-.| +|+.
T Consensus 675 lvs~s~-D~~iki--Wd~~ 690 (793)
T PLN00181 675 LVSSST-DNTLKL--WDLS 690 (793)
T ss_pred EEEEEC-CCEEEE--EeCC
Confidence 444433 354444 4554
No 248
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.93 E-value=0.0037 Score=60.66 Aligned_cols=201 Identities=10% Similarity=0.052 Sum_probs=122.8
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
..+....|++|+++|+-.+.+ ..|.++|.-+. ++..++-...+....++||.|+.||--..+. .
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN------~ 120 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN------K 120 (343)
T ss_pred cceeeeEecCCcCeEEeeccC---------CeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc------e
Confidence 456778899999998776654 46888898764 4555655666777889999999998665332 2
Q ss_pred cEEEEEEec-CCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeec-cCccccCC
Q 004816 270 AELWVGYIS-ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYS-LDAEFSRP 347 (729)
Q Consensus 270 ~~l~~~d~~-~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~-~~~~~~~~ 347 (729)
-.||-+... .+|.....+.+.++. .+++--.|.+|++|+-. .|......+|+++|+...... ..+++-..
T Consensus 121 Csiy~ls~~d~~g~~~v~r~l~gHt----gylScC~f~dD~~ilT~----SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 121 CSIYPLSTRDAEGNVRVSRELAGHT----GYLSCCRFLDDNHILTG----SGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred eEEEecccccccccceeeeeecCcc----ceeEEEEEcCCCceEec----CCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 334444322 123333345677776 78888889998876533 355667778999988776653 33333322
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEE
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
...| .+...|++..-+....||-+ ..+. .+.......+|..+ ..+++.-+. +.+.+..-++|
T Consensus 193 sl~p------------~~~ntFvSg~cD~~aklWD~--R~~~c~qtF~ghesDINsv~ffP~G~afa-tGSDD~tcRly- 256 (343)
T KOG0286|consen 193 SLSP------------SDGNTFVSGGCDKSAKLWDV--RSGQCVQTFEGHESDINSVRFFPSGDAFA-TGSDDATCRLY- 256 (343)
T ss_pred ecCC------------CCCCeEEecccccceeeeec--cCcceeEeecccccccceEEEccCCCeee-ecCCCceeEEE-
Confidence 2222 23334555556777777744 3443 44555567778887 444444433 44444444444
Q ss_pred EEcCCC
Q 004816 426 VTLDDH 431 (729)
Q Consensus 426 ~d~~~~ 431 (729)
|+...
T Consensus 257 -DlRaD 261 (343)
T KOG0286|consen 257 -DLRAD 261 (343)
T ss_pred -eecCC
Confidence 45444
No 249
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.93 E-value=0.0002 Score=66.50 Aligned_cols=106 Identities=19% Similarity=0.154 Sum_probs=79.3
Q ss_pred CEEEEEcCCCCC-CccccchhhhHHHhhCCcEEEEecCCCCC-CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 493 PLLVKSHGGPTS-EARGILNLSIQYWTSRGWAFVDVNYGGST-GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 493 P~vv~~hGg~~~-~~~~~~~~~~~~la~~G~~v~~~d~rGs~-g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
-.||++-|-..+ ........+..++.+.+|..+.+-.+-+. |||..-.+ .+.+|+..+++++...++ .
T Consensus 37 ~~vvfiGGLgdgLl~~~y~~~L~~~lde~~wslVq~q~~Ssy~G~Gt~slk--------~D~edl~~l~~Hi~~~~f--S 106 (299)
T KOG4840|consen 37 VKVVFIGGLGDGLLICLYTTMLNRYLDENSWSLVQPQLRSSYNGYGTFSLK--------DDVEDLKCLLEHIQLCGF--S 106 (299)
T ss_pred EEEEEEcccCCCccccccHHHHHHHHhhccceeeeeecccccccccccccc--------ccHHHHHHHHHHhhccCc--c
Confidence 346666553222 33344456788889999999999988653 35543221 458999999999877754 3
Q ss_pred CcEEEEEcChHHHHHHHHHh---CCCcceEEEEeccccChh
Q 004816 571 KRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~d~~ 608 (729)
.+|+++|||.|..-.+.+++ .+..+.++|+.+|+.|-.
T Consensus 107 t~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 107 TDVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred cceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhh
Confidence 58999999999999998885 677899999999999876
No 250
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.92 E-value=0.00012 Score=75.34 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=62.2
Q ss_pred hhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 511 NLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 511 ~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
+.++.++.++|..|+.++.++ +..+.. ...+..+..+++..+++.+.+.. ..++|-++|+|.||.+...+++
T Consensus 129 ~s~V~~l~~~g~~vfvIsw~n-Pd~~~~-----~~~~edYi~e~l~~aid~v~~it--g~~~InliGyCvGGtl~~~ala 200 (445)
T COG3243 129 KSLVRWLLEQGLDVFVISWRN-PDASLA-----AKNLEDYILEGLSEAIDTVKDIT--GQKDINLIGYCVGGTLLAAALA 200 (445)
T ss_pred ccHHHHHHHcCCceEEEeccC-chHhhh-----hccHHHHHHHHHHHHHHHHHHHh--CccccceeeEecchHHHHHHHH
Confidence 347899999999999999874 222211 11121222466778888887763 3478999999999999988887
Q ss_pred -CCCc-ceEEEEeccccCh
Q 004816 591 -FRDT-FKAGASLYGVADL 607 (729)
Q Consensus 591 -~~~~-~~a~v~~~~~~d~ 607 (729)
++.+ ++.++......|+
T Consensus 201 ~~~~k~I~S~T~lts~~DF 219 (445)
T COG3243 201 LMAAKRIKSLTLLTSPVDF 219 (445)
T ss_pred hhhhcccccceeeecchhh
Confidence 6665 8888877655544
No 251
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.92 E-value=9.4e-05 Score=78.19 Aligned_cols=208 Identities=14% Similarity=0.110 Sum_probs=117.7
Q ss_pred CccCceEEcC-C-CcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEE--CCEEEEEECCC
Q 004816 89 KRLGGTAVDG-H-GRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIF--GDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g-~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~ 164 (729)
..+..++|+| + .++.. . .+.|++.||+....+ ...-..+|+.. . ..+.--+..+-+. ...++.++..+
T Consensus 628 t~vtDl~WdPFD~~rLAV-a---~ddg~i~lWr~~a~g-l~e~~~tPe~~-l--t~h~eKI~slRfHPLAadvLa~asyd 699 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAV-A---TDDGQINLWRLTANG-LPENEMTPEKI-L--TIHGEKITSLRFHPLAADVLAVASYD 699 (1012)
T ss_pred ceeeecccCCCChHHeee-c---ccCceEEEEEeccCC-CCcccCCccee-e--ecccceEEEEEecchhhhHhhhhhcc
Confidence 3457889999 5 55544 2 268999999998772 23333344330 0 0111111111121 11233333345
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC---
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD--- 241 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~--- 241 (729)
..|-+||+.+. ..--+|... ...+.+++|||||++++-++.+ ..|+++...+++ +.+-++.+
T Consensus 700 ~Ti~lWDl~~~-~~~~~l~gH----tdqIf~~AWSpdGr~~AtVcKD---------g~~rVy~Prs~e-~pv~Eg~gpvg 764 (1012)
T KOG1445|consen 700 STIELWDLANA-KLYSRLVGH----TDQIFGIAWSPDGRRIATVCKD---------GTLRVYEPRSRE-QPVYEGKGPVG 764 (1012)
T ss_pred ceeeeeehhhh-hhhheeccC----cCceeEEEECCCCcceeeeecC---------ceEEEeCCCCCC-CccccCCCCcc
Confidence 57899999872 222344444 3557889999999999999875 358888887654 34443332
Q ss_pred -eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 242 -FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 242 -~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
.-....|.=||+.|..+.++... ..+|-+||.+ .=....+ .....|-. .+.--|.+.+|..++|++.. |
T Consensus 765 tRgARi~wacdgr~viv~Gfdk~S----eRQv~~Y~Aq-~l~~~pl-~t~~lDva--ps~LvP~YD~Ds~~lfltGK--G 834 (1012)
T KOG1445|consen 765 TRGARILWACDGRIVIVVGFDKSS----ERQVQMYDAQ-TLDLRPL-YTQVLDVA--PSPLVPHYDYDSNVLFLTGK--G 834 (1012)
T ss_pred CcceeEEEEecCcEEEEecccccc----hhhhhhhhhh-hccCCcc-eeeeeccc--CccccccccCCCceEEEecC--C
Confidence 23446799999999988866542 3456666654 1111111 01111100 23345667888777777765 6
Q ss_pred ceEEEEEEc
Q 004816 321 FWNLHKWIE 329 (729)
Q Consensus 321 ~~~l~~~d~ 329 (729)
...++.+.+
T Consensus 835 D~~v~~yEv 843 (1012)
T KOG1445|consen 835 DRFVNMYEV 843 (1012)
T ss_pred CceEEEEEe
Confidence 666666654
No 252
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.90 E-value=0.007 Score=66.09 Aligned_cols=204 Identities=14% Similarity=0.151 Sum_probs=126.3
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
.+..+.|+- |+|++|=.. .-|+..+|.+... .-++ .+.-|.....+...++| +++.+...++.+
T Consensus 309 ~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsE-----sYVl------KQQgH~~~i~~l~YSpDgq~iaTG~eDgKV 374 (893)
T KOG0291|consen 309 KILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSE-----SYVL------KQQGHSDRITSLAYSPDGQLIATGAEDGKV 374 (893)
T ss_pred eeeEEEecccCCEEEEcCC---ccceEEEEEeecc-----ceee------eccccccceeeEEECCCCcEEEeccCCCcE
Confidence 455677777 888888443 3577777776432 1121 11223333444443333 445566678899
Q ss_pred EEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeee-CCCeee
Q 004816 168 YKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVS-GSDFYA 244 (729)
Q Consensus 168 ~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~-~~~~~~ 244 (729)
-+||... |-. ...+.+ ...+..+.|+.+|+.|+..+-+ +.+-.+|+....- |.+|. .+....
T Consensus 375 KvWn~~S--gfC~vTFteH----ts~Vt~v~f~~~g~~llssSLD---------GtVRAwDlkRYrNfRTft~P~p~Qfs 439 (893)
T KOG0291|consen 375 KVWNTQS--GFCFVTFTEH----TSGVTAVQFTARGNVLLSSSLD---------GTVRAWDLKRYRNFRTFTSPEPIQFS 439 (893)
T ss_pred EEEeccC--ceEEEEeccC----CCceEEEEEEecCCEEEEeecC---------CeEEeeeecccceeeeecCCCceeee
Confidence 9999886 432 233333 3557888999999987666543 3577788876543 44443 222333
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNL 324 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l 324 (729)
-.+..|.|. |++.. .. +..+|++++++ +|++ +.++.+++ +.+....++|+|.+++.... ...-++
T Consensus 440 cvavD~sGe-lV~AG-~~-----d~F~IfvWS~q-TGql--lDiLsGHE----gPVs~l~f~~~~~~LaS~SW-DkTVRi 504 (893)
T KOG0291|consen 440 CVAVDPSGE-LVCAG-AQ-----DSFEIFVWSVQ-TGQL--LDILSGHE----GPVSGLSFSPDGSLLASGSW-DKTVRI 504 (893)
T ss_pred EEEEcCCCC-EEEee-cc-----ceEEEEEEEee-cCee--eehhcCCC----CcceeeEEccccCeEEeccc-cceEEE
Confidence 456667788 44454 21 35679999999 8987 78889987 77888899999996666655 455566
Q ss_pred EEEEcCCCeEEEe
Q 004816 325 HKWIESNNEVLAI 337 (729)
Q Consensus 325 ~~~d~~~g~~~~l 337 (729)
|-+=-..++...|
T Consensus 505 W~if~s~~~vEtl 517 (893)
T KOG0291|consen 505 WDIFSSSGTVETL 517 (893)
T ss_pred EEeeccCceeeeE
Confidence 6433344454444
No 253
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.89 E-value=0.0002 Score=71.06 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=103.6
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHH-HHHHHHHhCCCCCCCc
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCC-SCATFLVGSGKADEKR 572 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~-~~~~~l~~~~~~d~~r 572 (729)
.|+++|++.+ ....|..+++.+...++.|+.++++|....... ...++++. ..++.+.... ...+
T Consensus 2 ~lf~~p~~gG--~~~~y~~la~~l~~~~~~v~~i~~~~~~~~~~~----------~~si~~la~~y~~~I~~~~--~~gp 67 (229)
T PF00975_consen 2 PLFCFPPAGG--SASSYRPLARALPDDVIGVYGIEYPGRGDDEPP----------PDSIEELASRYAEAIRARQ--PEGP 67 (229)
T ss_dssp EEEEESSTTC--SGGGGHHHHHHHTTTEEEEEEECSTTSCTTSHE----------ESSHHHHHHHHHHHHHHHT--SSSS
T ss_pred eEEEEcCCcc--CHHHHHHHHHhCCCCeEEEEEEecCCCCCCCCC----------CCCHHHHHHHHHHHhhhhC--CCCC
Confidence 5888999743 557788888888776799999999865411110 01233332 2334444432 2248
Q ss_pred EEEEEcChHHHHHHHHHh----CCCcceEEEEeccccCh-hHH--hhhc-ch-hhhhh----------------hhhhcC
Q 004816 573 LCITGGSAGGYTTLAALA----FRDTFKAGASLYGVADL-SML--RAET-HK-FESRY----------------IDNLVG 627 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d~-~~~--~~~~-~~-~~~~~----------------~~~~~~ 627 (729)
+.|+|||+||.+|+-+|. ....+..++++.+.... ... .... .. ..... +...+.
T Consensus 68 ~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (229)
T PF00975_consen 68 YVLAGWSFGGILAFEMARQLEEAGEEVSRLILIDSPPPSIKERPRSREPSDEQFIEELRRIGGTPDASLEDEELLARLLR 147 (229)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHTT-SESEEEEESCSSTTCHSCHHHHHCHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHH
T ss_pred eeehccCccHHHHHHHHHHHHHhhhccCceEEecCCCCCcccchhhhhhhHHHHHHHHHHhcCCchhhhcCHHHHHHHHH
Confidence 999999999999998885 45567778877743221 100 0000 00 00000 000000
Q ss_pred ----ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhC-CCCEEEEEECCCCccc-CCcccHHHHHH
Q 004816 628 ----SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKEN-GLPVALVEYEGEQHGF-RKAENIKFTLE 701 (729)
Q Consensus 628 ----~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~-g~~~~~~~~~~~gH~~-~~~~~~~~~~~ 701 (729)
+...+... +......-.+|.++.....|+..... .....+.+.+. ..+++++.++| +|.. .. ++..+..+
T Consensus 148 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~W~~~~~~~~~~~~v~G-~H~~~l~-~~~~~i~~ 223 (229)
T PF00975_consen 148 ALRDDFQALENY-SIRPIDKQKVPITLFYALDDPLVSMD-RLEEADRWWDYTSGDVEVHDVPG-DHFSMLK-PHVAEIAE 223 (229)
T ss_dssp HHHHHHHHHHTC-S-TTSSSESSEEEEEEECSSSSSSHH-CGGHHCHHHGCBSSSEEEEEESS-ETTGHHS-TTHHHHHH
T ss_pred HHHHHHHHHhhc-cCCccccCCCcEEEEecCCCccccch-hhhhHHHHHHhcCCCcEEEEEcC-CCcEecc-hHHHHHHH
Confidence 00111111 11111111356888888888876543 11222224443 44788999987 7864 33 56666666
Q ss_pred HHHHHH
Q 004816 702 QQMVFF 707 (729)
Q Consensus 702 ~~~~fl 707 (729)
.|.+||
T Consensus 224 ~I~~~~ 229 (229)
T PF00975_consen 224 KIAEWL 229 (229)
T ss_dssp HHHHHH
T ss_pred HHhccC
Confidence 666654
No 254
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.86 E-value=0.00024 Score=75.53 Aligned_cols=189 Identities=14% Similarity=0.141 Sum_probs=108.8
Q ss_pred CCCEEEEEcCCCCCCccccchhhhH-HHhhCC--cEEEEecCCCC-CCCchhHHHhhccCCCcccHHHHHHHHHHHHh--
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQ-YWTSRG--WAFVDVNYGGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVG-- 564 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~-~la~~G--~~v~~~d~rGs-~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~-- 564 (729)
..|++++.||.|.......+.+..+ .+.-.| .-|..+|++-. +|-+-. ...+-...+.++.+.
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gevvev~tfdl~n~igG~nI~-----------h~ae~~vSf~r~kvlei 243 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEVVEVPTFDLNNPIGGANIK-----------HAAEYSVSFDRYKVLEI 243 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhceeeeeccccccCCCCCcchH-----------HHHHHHHHHhhhhhhhh
Confidence 3589999999883222222222222 232234 44556666521 211100 002223333342222
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
.+......|+|+|.|+|+.++.+... ....+.++|++.=..+... ...+ .+-+.+.
T Consensus 244 ~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~~vd--------------gprg--------irDE~Ll 301 (784)
T KOG3253|consen 244 TGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLDTVD--------------GPRG--------IRDEALL 301 (784)
T ss_pred hccCCCCceEEEecccCceeeEEeccccCCceEEEEEEecccccCCC--------------cccC--------CcchhhH
Confidence 24455678999999999777766665 3334666666532211110 0000 0112234
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcc--------cHH----HHHHHHHHHHHHH
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAE--------NIK----FTLEQQMVFFARV 710 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~--------~~~----~~~~~~~~fl~~~ 710 (729)
.++.|+|++.|.+|..|+++..+++.+++++ .++++++.+++|.+.-+. .+. ...+.|.+|+...
T Consensus 302 dmk~PVLFV~Gsnd~mcspn~ME~vreKMqA---~~elhVI~~adhsmaipk~k~esegltqseVd~~i~~aI~efvt~~ 378 (784)
T KOG3253|consen 302 DMKQPVLFVIGSNDHMCSPNSMEEVREKMQA---EVELHVIGGADHSMAIPKRKVESEGLTQSEVDSAIAQAIKEFVTIA 378 (784)
T ss_pred hcCCceEEEecCCcccCCHHHHHHHHHHhhc---cceEEEecCCCccccCCccccccccccHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999987 779999999999874221 122 3445566666666
Q ss_pred hCCCC
Q 004816 711 VGHFD 715 (729)
Q Consensus 711 l~~~~ 715 (729)
+.+.+
T Consensus 379 l~c~e 383 (784)
T KOG3253|consen 379 LNCTE 383 (784)
T ss_pred hcCCC
Confidence 65333
No 255
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=97.86 E-value=0.014 Score=63.78 Aligned_cols=220 Identities=8% Similarity=-0.043 Sum_probs=128.8
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
...+.++.|||++.++++.+..+.+ .-.|.+.|+.+|+...-. -.+...+.+|.+||+.++|++.++.+ ...
T Consensus 129 ~~Lg~~~~s~D~~~la~s~D~~G~e----~y~lr~kdL~tg~~~~d~-i~~~~~~~~Wa~d~~~lfYt~~d~~~---rp~ 200 (682)
T COG1770 129 FSLGAASISPDHNLLAYSVDVLGDE----QYTLRFKDLATGEELPDE-ITNTSGSFAWAADGKTLFYTRLDENH---RPD 200 (682)
T ss_pred eeeeeeeeCCCCceEEEEEeccccc----EEEEEEEecccccccchh-hcccccceEEecCCCeEEEEEEcCCC---Ccc
Confidence 4567889999999999998876655 467888899888643211 11234567999999999999977655 345
Q ss_pred EEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCC--CeEEEeeccCccccCC
Q 004816 271 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN--NEVLAIYSLDAEFSRP 347 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~--g~~~~l~~~~~~~~~~ 347 (729)
+||...+. +.......+....+. ...-.+.=+...+ |+..... .....+++++.+. ++.+.+.+.... .
T Consensus 201 kv~~h~~g-t~~~~d~lvyeE~d~---~f~~~v~~s~s~~yi~i~~~~-~~tsE~~ll~a~~p~~~p~vv~pr~~g---~ 272 (682)
T COG1770 201 KVWRHRLG-TPGSSDELVYEEKDD---RFFLSVGRSRSEAYIVISLGS-HITSEVRLLDADDPEAEPKVVLPRENG---V 272 (682)
T ss_pred eEEEEecC-CCCCcceEEEEcCCC---cEEEEeeeccCCceEEEEcCC-CcceeEEEEecCCCCCceEEEEEcCCC---c
Confidence 68888776 322223445555542 1222233344445 4444433 4556777777654 344555532211 1
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEECC-eEEEEEEEC--CCCceEeeccCCc--ceEEeeeeCCEEEEEEeCCCCCce
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQNG-RSYLGILDD--FGHSLSLLDIPFT--DIDNITLGNDCLFVEGASGVEPSS 422 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~g-~~~ly~~d~--~~g~~~~lt~~~~--~v~~~~~~~~~~~~~~~~~~~~~~ 422 (729)
.+.. +| .+..+|+.++.+| ..+|+.... ....++.+..+.. .+.++..-++. ++...+.+.-+.
T Consensus 273 eY~~---------eh-~~d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~-lVl~eR~~glp~ 341 (682)
T COG1770 273 EYSV---------EH-GGDRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADH-LVLLERQEGLPR 341 (682)
T ss_pred EEee---------ee-cCcEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccE-EEEEecccCCce
Confidence 1111 11 4567888888888 567777655 2223444433322 23444333443 444555666778
Q ss_pred EEEEEcCCCcceeee
Q 004816 423 VAKVTLDDHKLKAVD 437 (729)
Q Consensus 423 ly~~d~~~~~~~~lt 437 (729)
+++.+.++++...|.
T Consensus 342 v~v~~~~~~~~~~i~ 356 (682)
T COG1770 342 VVVRDRKTGEERGIA 356 (682)
T ss_pred EEEEecCCCceeeEE
Confidence 888888877765554
No 256
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.82 E-value=0.0072 Score=60.47 Aligned_cols=271 Identities=12% Similarity=0.037 Sum_probs=144.1
Q ss_pred CCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 88 SKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 88 ~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
..++....||- +..|..- .+-.|...+|....+ ..+..+..+.+ ++.-..|.+. .+++....++.
T Consensus 106 KDSVt~~~Fsh-dgtlLAT--GdmsG~v~v~~~stg---~~~~~~~~e~~--------dieWl~WHp~a~illAG~~DGs 171 (399)
T KOG0296|consen 106 KDSVTCCSFSH-DGTLLAT--GDMSGKVLVFKVSTG---GEQWKLDQEVE--------DIEWLKWHPRAHILLAGSTDGS 171 (399)
T ss_pred CCceEEEEEcc-CceEEEe--cCCCccEEEEEcccC---ceEEEeecccC--------ceEEEEecccccEEEeecCCCc
Confidence 34556666764 2222221 224566666665544 22222221100 1222334433 45666667889
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCC-Ceee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGS-DFYA 244 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~-~~~~ 244 (729)
+|.|.+.. +...++-.+. ..+.....|.|||++++...++ ..|.++++.+|++. .++... ....
T Consensus 172 vWmw~ip~--~~~~kv~~Gh---~~~ct~G~f~pdGKr~~tgy~d---------gti~~Wn~ktg~p~~~~~~~e~~~~~ 237 (399)
T KOG0296|consen 172 VWMWQIPS--QALCKVMSGH---NSPCTCGEFIPDGKRILTGYDD---------GTIIVWNPKTGQPLHKITQAEGLELP 237 (399)
T ss_pred EEEEECCC--cceeeEecCC---CCCcccccccCCCceEEEEecC---------ceEEEEecCCCceeEEecccccCcCC
Confidence 99999986 4444444442 3455667899999998776653 56999999998764 444222 1222
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec--------CCCCCccccccCceeCCCCcEEEEEe
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA--------GFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~--------~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
...++-+|..+. .... ....++++.. +|++ +.+.. ..+ .-..++....||.+=.|+....
T Consensus 238 ~~~~~~~~~~~~-~g~~-------e~~~~~~~~~-sgKV--v~~~n~~~~~l~~~~e-~~~esve~~~~ss~lpL~A~G~ 305 (399)
T KOG0296|consen 238 CISLNLAGSTLT-KGNS-------EGVACGVNNG-SGKV--VNCNNGTVPELKPSQE-ELDESVESIPSSSKLPLAACGS 305 (399)
T ss_pred ccccccccceeE-eccC-------CccEEEEccc-cceE--EEecCCCCccccccch-hhhhhhhhcccccccchhhccc
Confidence 235566666443 3211 2235555544 4554 22222 111 0003344455655433444333
Q ss_pred cCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eecc
Q 004816 317 RKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDI 395 (729)
Q Consensus 317 ~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~ 395 (729)
- . ..|.+||.+..+.|.+...+..+....|. + ...++++..+|.. +..|..+|+.+ ..+.
T Consensus 306 v-d--G~i~iyD~a~~~~R~~c~he~~V~~l~w~-------------~-t~~l~t~c~~g~v--~~wDaRtG~l~~~y~G 366 (399)
T KOG0296|consen 306 V-D--GTIAIYDLAASTLRHICEHEDGVTKLKWL-------------N-TDYLLTACANGKV--RQWDARTGQLKFTYTG 366 (399)
T ss_pred c-c--ceEEEEecccchhheeccCCCceEEEEEc-------------C-cchheeeccCceE--EeeeccccceEEEEec
Confidence 3 2 35777788888888777555445444554 3 3455566666654 44577777755 4555
Q ss_pred CCcceEEe-eeeCCEEEEEEeCC
Q 004816 396 PFTDIDNI-TLGNDCLFVEGASG 417 (729)
Q Consensus 396 ~~~~v~~~-~~~~~~~~~~~~~~ 417 (729)
....|..+ ...++++++..+..
T Consensus 367 H~~~Il~f~ls~~~~~vvT~s~D 389 (399)
T KOG0296|consen 367 HQMGILDFALSPQKRLVVTVSDD 389 (399)
T ss_pred CchheeEEEEcCCCcEEEEecCC
Confidence 56667666 44555666655543
No 257
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.81 E-value=0.0084 Score=60.96 Aligned_cols=212 Identities=13% Similarity=0.069 Sum_probs=114.4
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
+...+|.||+++++..-.. ...+=++|++.++...-.+-+++..-.-+.+++ ....+ .. ..+.
T Consensus 98 ~~~~ls~dgk~~~V~N~TP-------a~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~-F~~lC---~D------Gsl~ 160 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTP-------ATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRG-FSMLC---GD------GSLL 160 (342)
T ss_dssp GGEEE-TTSSEEEEEEESS-------SEEEEEEETTTTEEEEEEEGTSEEEEEEEETTE-EEEEE---TT------SCEE
T ss_pred cceEEccCCcEEEEEccCC-------CCeEEEEECCCCceeeeecCCCEEEEEecCCCc-eEEEe---cC------CceE
Confidence 5678999999865543322 367999999998876555555554433333332 22222 21 2255
Q ss_pred EEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccC---ccccCCcc
Q 004816 274 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLD---AEFSRPLW 349 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~---~~~~~~~w 349 (729)
.+.++.+|+.... ..+-.+.+...-+..+.++.++. ++|.+-. .++|.+|+.+...+..-+-. .......|
T Consensus 161 ~v~Ld~~Gk~~~~-~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~W 235 (342)
T PF06433_consen 161 TVTLDADGKEAQK-STKVFDPDDDPLFEHPAYSRDGGRLYFVSYE----GNVYSADLSGDSAKFGKPWSLLTDAEKADGW 235 (342)
T ss_dssp EEEETSTSSEEEE-EEEESSTTTS-B-S--EEETTTTEEEEEBTT----SEEEEEEETTSSEEEEEEEESS-HHHHHTTE
T ss_pred EEEECCCCCEeEe-eccccCCCCcccccccceECCCCeEEEEecC----CEEEEEeccCCcccccCcccccCccccccCc
Confidence 6666655664322 11111111003445677776654 8888765 46888888776654432111 01123578
Q ss_pred cccCcc-eeeeeecCCCCEEEEEEEE-------CCeEEEEEEECCCCce-EeeccCCcceEEe--eeeCCEEEEEEeCCC
Q 004816 350 VFGINS-YEIIQSHGEKNLIACSYRQ-------NGRSYLGILDDFGHSL-SLLDIPFTDIDNI--TLGNDCLFVEGASGV 418 (729)
Q Consensus 350 ~~~~~~-~~~l~~~~~~~~l~~~s~~-------~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~--~~~~~~~~~~~~~~~ 418 (729)
-|+.-. +.+-+ ..++||+.... ++...||.+|+++++. .++... ..+.++ +.+++-++|..+.
T Consensus 236 rPGG~Q~~A~~~---~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~-- 309 (342)
T PF06433_consen 236 RPGGWQLIAYHA---ASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE-HPIDSIAVSQDDKPLLYALSA-- 309 (342)
T ss_dssp EE-SSS-EEEET---TTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE-EEESEEEEESSSS-EEEEEET--
T ss_pred CCcceeeeeecc---ccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC-CccceEEEccCCCcEEEEEcC--
Confidence 876533 33332 56778777653 3457899999999874 344432 223334 5555656655543
Q ss_pred CCceEEEEEcCCCcc
Q 004816 419 EPSSVAKVTLDDHKL 433 (729)
Q Consensus 419 ~~~~ly~~d~~~~~~ 433 (729)
....|+.+|..+|+.
T Consensus 310 ~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 310 GDGTLDVYDAATGKL 324 (342)
T ss_dssp TTTEEEEEETTT--E
T ss_pred CCCeEEEEeCcCCcE
Confidence 235799999999875
No 258
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.80 E-value=0.0018 Score=61.81 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=107.2
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
.+.+.+|+|...-++++...+ ..|.++|.-.++...-+...+......|||||+++++...+ ..
T Consensus 66 svdql~w~~~~~d~~atas~d--------k~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kd--------D~ 129 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGD--------KTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKD--------DR 129 (313)
T ss_pred chhhheeCCCCCcceEEecCC--------ceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCc--------cc
Confidence 456788999776666665433 35888899888877666555555668999999999988733 33
Q ss_pred EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccc
Q 004816 272 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 351 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 351 (729)
|-.+|.. +-+. ....... .-.....|.-++.++|..+. .|.-+|..+. ..+.+.+-.+.- .
T Consensus 130 it~id~r-~~~~---~~~~~~~----~e~ne~~w~~~nd~Fflt~G-lG~v~ILsyp----sLkpv~si~AH~-s----- 190 (313)
T KOG1407|consen 130 ITFIDAR-TYKI---VNEEQFK----FEVNEISWNNSNDLFFLTNG-LGCVEILSYP----SLKPVQSIKAHP-S----- 190 (313)
T ss_pred EEEEEec-ccce---eehhccc----ceeeeeeecCCCCEEEEecC-CceEEEEecc----ccccccccccCC-c-----
Confidence 6667765 2221 1111111 23356789877778888876 6777777664 223332211110 0
Q ss_pred cCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC-CceEeeccCCcceEEe-eeeCCEEEEEEe
Q 004816 352 GINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG-HSLSLLDIPFTDIDNI-TLGNDCLFVEGA 415 (729)
Q Consensus 352 ~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~-g~~~~lt~~~~~v~~~-~~~~~~~~~~~~ 415 (729)
.---+.|.| +|+++.. ...+.-..|| |++. -=++.++.-+|.|..+ .+-+++++..++
T Consensus 191 nCicI~f~p---~GryfA~-GsADAlvSLW--D~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 191 NCICIEFDP---DGRYFAT-GSADALVSLW--DVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred ceEEEEECC---CCceEee-ccccceeecc--ChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 001233443 6665543 3344555565 3321 1146777788999998 455666666554
No 259
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00044 Score=67.43 Aligned_cols=263 Identities=10% Similarity=0.006 Sum_probs=142.8
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccc--cccCCceEEEECC-EEEEEECCCC
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTA--QEYGGGAFRIFGD-TVIFSNYKDQ 165 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~i~~~~~~~~ 165 (729)
.+++.++|| |+.+.- . +-+|-+.+|.+..+ +.+.-+- +.+...+ ......+++++.+ .++.+...+|
T Consensus 215 h~EcA~FSPDgqyLvs-g---SvDGFiEVWny~~G---KlrKDLk--YQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 215 HVECARFSPDGQYLVS-G---SVDGFIEVWNYTTG---KLRKDLK--YQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred chhheeeCCCCceEee-c---cccceeeeehhccc---hhhhhhh--hhhhcceeecccceEEEeecccHHHhhccCcCC
Confidence 468999999 654432 2 24678888887654 3332211 1111111 1112334444433 3444445577
Q ss_pred cEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCCCee
Q 004816 166 RLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGSDFY 243 (729)
Q Consensus 166 ~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~~~~ 243 (729)
.|-+|.+.+ |. .++.... ....+...+||.|+.+|+-...+ ..+.+-.+.+|+. +..-....+.
T Consensus 286 kIKvWri~t--G~ClRrFdrA---HtkGvt~l~FSrD~SqiLS~sfD---------~tvRiHGlKSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 286 KIKVWRIET--GQCLRRFDRA---HTKGVTCLSFSRDNSQILSASFD---------QTVRIHGLKSGKCLKEFRGHSSYV 351 (508)
T ss_pred cEEEEEEec--chHHHHhhhh---hccCeeEEEEccCcchhhccccc---------ceEEEeccccchhHHHhcCccccc
Confidence 888888887 43 3333311 12345778899999998766543 2355556777653 2222334466
Q ss_pred eeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCce
Q 004816 244 AFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 322 (729)
Q Consensus 244 ~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~ 322 (729)
+...|++||.+|.-.+.+ ..+.+++.. +++. ...+.....+ ..+..+-.-|..- -+.+.++ ..
T Consensus 352 n~a~ft~dG~~iisaSsD--------gtvkvW~~K-tteC--~~Tfk~~~~d--~~vnsv~~~PKnpeh~iVCNr---sn 415 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASSD--------GTVKVWHGK-TTEC--LSTFKPLGTD--YPVNSVILLPKNPEHFIVCNR---SN 415 (508)
T ss_pred cceEEcCCCCeEEEecCC--------ccEEEecCc-chhh--hhhccCCCCc--ccceeEEEcCCCCceEEEEcC---CC
Confidence 778999999999876633 336677766 4443 2222211111 4445555556554 4445554 34
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eeccCCcceE
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIPFTDID 401 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~~~~v~ 401 (729)
.+|+++..+.-++....+..+-++ +.. ....| .|.++|...+ + ..+|-+...+|.++ .++-..-++.
T Consensus 416 tv~imn~qGQvVrsfsSGkREgGd--Fi~----~~lSp---kGewiYcigE-D--~vlYCF~~~sG~LE~tl~VhEkdvI 483 (508)
T KOG0275|consen 416 TVYIMNMQGQVVRSFSSGKREGGD--FIN----AILSP---KGEWIYCIGE-D--GVLYCFSVLSGKLERTLPVHEKDVI 483 (508)
T ss_pred eEEEEeccceEEeeeccCCccCCc--eEE----EEecC---CCcEEEEEcc-C--cEEEEEEeecCceeeeeeccccccc
Confidence 688899877666766655433222 111 11122 6777776654 3 35777776666654 4444444444
Q ss_pred Ee
Q 004816 402 NI 403 (729)
Q Consensus 402 ~~ 403 (729)
.+
T Consensus 484 Gl 485 (508)
T KOG0275|consen 484 GL 485 (508)
T ss_pred cc
Confidence 44
No 260
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=97.79 E-value=3e-05 Score=87.76 Aligned_cols=128 Identities=20% Similarity=0.203 Sum_probs=83.8
Q ss_pred eEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cc--hhhhHHHhhCCcEEEEecCCCC-CCCchhHHHhhcc
Q 004816 470 QKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-IL--NLSIQYWTSRGWAFVDVNYGGS-TGYGREFRERLLG 545 (729)
Q Consensus 470 ~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~--~~~~~~la~~G~~v~~~d~rGs-~g~g~~~~~~~~~ 545 (729)
..+..-++.|.... ..+ +||+|++|||....... .+ ......+..+...|+.++||-+ -|+...-.....+
T Consensus 95 DCLylNV~tp~~~~----~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d~~~~g 169 (545)
T KOG1516|consen 95 DCLYLNVYTPQGCS----ESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGDSAAPG 169 (545)
T ss_pred CCceEEEeccCCCc----cCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCCCCCCC
Confidence 34666677786621 112 89999999985322221 11 2233445566899999999952 2222221122244
Q ss_pred CCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHHHHHh---CCCcceEEEEecccc
Q 004816 546 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTLAALA---FRDTFKAGASLYGVA 605 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~~~~~---~~~~~~a~v~~~~~~ 605 (729)
++| ..|...+++|+.++ -.-|+++|.|+|||+||..+..++. ...+|..+|..+|..
T Consensus 170 N~g---l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~ 232 (545)
T KOG1516|consen 170 NLG---LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNA 232 (545)
T ss_pred ccc---HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccc
Confidence 554 67999999999875 3469999999999999999977765 235788888777653
No 261
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.74 E-value=0.023 Score=59.63 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=139.6
Q ss_pred HHhccCCccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEEC
Q 004816 83 VVSGASKRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNY 162 (729)
Q Consensus 83 ~i~~~~~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (729)
.+.+-.+.+..+.++|++...|... -+|...-|.. + .|..-.+++.. |..-+..+..+...-+|+..
T Consensus 315 ~i~GHnK~ITaLtv~~d~~~i~Sgs---yDG~I~~W~~--~-~g~~~~~~g~~-------h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 315 VISGHNKSITALTVSPDGKTIYSGS---YDGHINSWDS--G-SGTSDRLAGKG-------HTNQIKGMAASESGELFTIG 381 (603)
T ss_pred eecccccceeEEEEcCCCCEEEeec---cCceEEEEec--C-Ccccccccccc-------ccceEEEEeecCCCcEEEEe
Confidence 3444577788999998333333332 3566555543 3 22444454333 33334455555533344544
Q ss_pred CCCcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee
Q 004816 163 KDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS 238 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~ 238 (729)
-+..|++.++.++ +- ...|... .-..+.++||..++.+... +|.++.-.++ ...+.-
T Consensus 382 ~Dd~l~~~~~~~~-~~t~~~~~~lg~Q-------P~~lav~~d~~~avv~~~~----------~iv~l~~~~~-~~~~~~ 442 (603)
T KOG0318|consen 382 WDDTLRVISLKDN-GYTKSEVVKLGSQ-------PKGLAVLSDGGTAVVACIS----------DIVLLQDQTK-VSSIPI 442 (603)
T ss_pred cCCeEEEEecccC-cccccceeecCCC-------ceeEEEcCCCCEEEEEecC----------cEEEEecCCc-ceeecc
Confidence 5667888888542 21 1122221 1345677787766666543 3555542222 222211
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 318 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~ 318 (729)
+ -.....+.+||++.+|.-. ....|+++.+. +++........... ..+..+++||||..+...+.
T Consensus 443 ~-y~~s~vAv~~~~~~vaVGG--------~Dgkvhvysl~-g~~l~ee~~~~~h~----a~iT~vaySpd~~yla~~Da- 507 (603)
T KOG0318|consen 443 G-YESSAVAVSPDGSEVAVGG--------QDGKVHVYSLS-GDELKEEAKLLEHR----AAITDVAYSPDGAYLAAGDA- 507 (603)
T ss_pred c-cccceEEEcCCCCEEEEec--------ccceEEEEEec-CCcccceeeeeccc----CCceEEEECCCCcEEEEecc-
Confidence 1 1223568999999888655 23349999998 55543333333443 56678999999985445544
Q ss_pred CCceEEEEEEcCCCeEEEe--eccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 319 NGFWNLHKWIESNNEVLAI--YSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 319 ~g~~~l~~~d~~~g~~~~l--~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
. ..+..+|.++.+...- .-..+.+....|+| ++ .++.+..-+....||.++.-...+......
T Consensus 508 ~--rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP------------~n-~~vATGSlDt~Viiysv~kP~~~i~iknAH 572 (603)
T KOG0318|consen 508 S--RKVVLYDVASREVKTNRWAFHTAKINCVAWSP------------NN-KLVATGSLDTNVIIYSVKKPAKHIIIKNAH 572 (603)
T ss_pred C--CcEEEEEcccCceecceeeeeeeeEEEEEeCC------------Cc-eEEEeccccceEEEEEccChhhheEecccc
Confidence 2 3466677777665211 11222333455664 43 455555556666677665333332222223
Q ss_pred CcceEEe-eeeCCEEE
Q 004816 397 FTDIDNI-TLGNDCLF 411 (729)
Q Consensus 397 ~~~v~~~-~~~~~~~~ 411 (729)
...+..+ ..++..++
T Consensus 573 ~~gVn~v~wlde~tvv 588 (603)
T KOG0318|consen 573 LGGVNSVAWLDESTVV 588 (603)
T ss_pred ccCceeEEEecCceEE
Confidence 3346666 44444443
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.028 Score=59.44 Aligned_cols=231 Identities=12% Similarity=0.058 Sum_probs=123.2
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee---CC
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS---GS 240 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~---~~ 240 (729)
..+|.+||+.+ |...+--......-....=++||-|+++++.... ..|-+++..+ ...|.. ..
T Consensus 281 ~~~l~IWDI~t--G~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----------~sisIyEtps--f~lld~Kslki 346 (698)
T KOG2314|consen 281 GQQLIIWDIAT--GLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----------NSISIYETPS--FMLLDKKSLKI 346 (698)
T ss_pred CceEEEEEccc--cchhcceeccCCCccccceEEeccCCceeEEecc----------ceEEEEecCc--eeeecccccCC
Confidence 35899999998 6543322111001122234689999998776644 2344444322 111111 11
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC-eeeeEEecCCCCCccccccCceeCCCCc-EEEEEecC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRK 318 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~ 318 (729)
....++.|||-+.-|||..-...+. ..++-++.+. ++. ++...++. .+...+.|-..|. |.+-.++.
T Consensus 347 ~gIr~FswsP~~~llAYwtpe~~~~---parvtL~evP-s~~~iRt~nlfn-------VsDckLhWQk~gdyLcvkvdR~ 415 (698)
T KOG2314|consen 347 SGIRDFSWSPTSNLLAYWTPETNNI---PARVTLMEVP-SKREIRTKNLFN-------VSDCKLHWQKSGDYLCVKVDRH 415 (698)
T ss_pred ccccCcccCCCcceEEEEcccccCC---cceEEEEecC-ccceeeecccee-------eeccEEEeccCCcEEEEEEEee
Confidence 2345678999999999987444332 3346666665 443 22222222 2335678999999 77766652
Q ss_pred C-----C---ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC--CeEEEEEEECCCC
Q 004816 319 N-----G---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN--GRSYLGILDDFGH 388 (729)
Q Consensus 319 ~-----g---~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~--g~~~ly~~d~~~g 388 (729)
. | ...|++++-..= .....+....+-...|-| .|+++...+... .....|.+....+
T Consensus 416 tK~~~~g~f~n~eIfrireKdI-pve~velke~vi~FaWEP------------~gdkF~vi~g~~~k~tvsfY~~e~~~~ 482 (698)
T KOG2314|consen 416 TKSKVKGQFSNLEIFRIREKDI-PVEVVELKESVIAFAWEP------------HGDKFAVISGNTVKNTVSFYAVETNIK 482 (698)
T ss_pred ccccccceEeeEEEEEeeccCC-Cceeeecchheeeeeecc------------CCCeEEEEEccccccceeEEEeecCCC
Confidence 1 1 124555543221 111122223344556766 556655555433 3456777776566
Q ss_pred ceEeecc-CCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 389 SLSLLDI-PFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 389 ~~~~lt~-~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
+.+.+.. +......+ .++.+++++.++-....+.++-+|.+-..
T Consensus 483 ~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~ 528 (698)
T KOG2314|consen 483 KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD 528 (698)
T ss_pred chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhh
Confidence 6554432 22223333 45566666666655566678888766433
No 263
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=97.72 E-value=0.0003 Score=74.49 Aligned_cols=99 Identities=17% Similarity=0.151 Sum_probs=64.7
Q ss_pred eEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
..|-++|+.+++.+ .|....+.+.+.+|||||++||-+- ....|.++... .++ .+ +.++..+- ...
T Consensus 700 ~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc--------KDg~~rVy~Pr-s~e-~p--v~Eg~gpv-gtR 766 (1012)
T KOG1445|consen 700 STIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC--------KDGTLRVYEPR-SRE-QP--VYEGKGPV-GTR 766 (1012)
T ss_pred ceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee--------cCceEEEeCCC-CCC-Cc--cccCCCCc-cCc
Confidence 56888899987665 4555566778899999999999876 23458888766 443 12 22222110 022
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g 332 (729)
-.++.|.-||+ ++++.-+.....+|-+||.++-
T Consensus 767 gARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 767 GARILWACDGRIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred ceeEEEEecCcEEEEecccccchhhhhhhhhhhc
Confidence 35788999999 6666555455566777776553
No 264
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.71 E-value=0.014 Score=57.41 Aligned_cols=219 Identities=16% Similarity=0.172 Sum_probs=119.9
Q ss_pred CcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccccccc---CCceEEE
Q 004816 77 SPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEY---GGGAFRI 152 (729)
Q Consensus 77 ~~lt~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~---~~~~~~~ 152 (729)
.||.+..+-+-.+.+.++.++- |+.+.-.. +++.+.||..++-...+.+ ..|..+ +| ....|++
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdGK~lat~~----~Dr~Ir~w~~~DF~~~eHr-------~~R~nv-e~dhpT~V~Fap 142 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDGKKLATIS----GDRSIRLWDVRDFENKEHR-------CIRQNV-EYDHPTRVVFAP 142 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCCceeEEEe----CCceEEEEecchhhhhhhh-------Hhhccc-cCCCceEEEECC
Confidence 4566666766677788999987 66665544 3567778876543111111 222222 12 2235666
Q ss_pred ECCEEEEEECCCCcEEEEeCCC---CCCCCeecCCCC--CCCc---eeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDS---KDSSPLPITPDY--GEPL---VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~---~~~~~~~lt~~~--~~~~---~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+...+++.-.....|+++.+.. | +-.-..+..+ +.+. ...-+.-..-.+++|.-.+.+ ..|+
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG-~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~d---------t~i~ 212 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDG-SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLD---------TKIC 212 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccC-CCCcccccccccccchhcccceEEEeecCCceEEEEecCC---------CcEE
Confidence 6666666655566788877642 1 1111111111 0000 011222233344443333322 4689
Q ss_pred EEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeee---eEEecCCCCCcccccc
Q 004816 225 AIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVESPT 301 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~---~~~~~~~~~~~~~~~~ 301 (729)
++++.+.....+....-.....+.||||+.|+...... ...+|-.=...+|+... +-.+.+.. ..+.
T Consensus 213 lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~gFTp------DVkVwE~~f~kdG~fqev~rvf~LkGH~----saV~ 282 (420)
T KOG2096|consen 213 LWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTP------DVKVWEPIFTKDGTFQEVKRVFSLKGHQ----SAVL 282 (420)
T ss_pred EEecCCceeeeeccccccccceeeCCCCcEEEEecCCC------CceEEEEEeccCcchhhhhhhheeccch----hhee
Confidence 99998544444433333445678999999999777422 23344443444565433 23455665 6677
Q ss_pred CceeCCCCc-EEEEEecCCCceEEEEEEc
Q 004816 302 EPKWSSKGE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 302 ~~~wspDG~-l~~~~~~~~g~~~l~~~d~ 329 (729)
..+||++.+ ++-++ . .|.|+||-.|.
T Consensus 283 ~~aFsn~S~r~vtvS-k-DG~wriwdtdV 309 (420)
T KOG2096|consen 283 AAAFSNSSTRAVTVS-K-DGKWRIWDTDV 309 (420)
T ss_pred eeeeCCCcceeEEEe-c-CCcEEEeeccc
Confidence 889999998 55444 4 58999996554
No 265
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.69 E-value=0.0024 Score=72.38 Aligned_cols=121 Identities=17% Similarity=0.106 Sum_probs=72.5
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
...+.|..||||+..++-+.-+ ..|.+++..+.+.. .+-......-+..|.|=||++|-.+.|+
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s~D---------nsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDr------ 193 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVSLD---------NSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDR------ 193 (942)
T ss_pred CCccceeccCCCccEEEEeccc---------ceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCc------
Confidence 3567899999999987766554 35778888776443 3333445677899999999999877333
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCC-CccccccCceeCCCCc-EEEEEecCCCceEEEEEEc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDP-TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~-~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~ 329 (729)
.|-++.+. +=.+ ..++....+. .-...+.++.|||||+ |+....-..+...+-+++-
T Consensus 194 --tikvwrt~-dw~i-~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 194 --TLKVWRTS-DWGI-EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred --eEEEEEcc-ccee-eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 35555544 2111 1222222210 0003567899999999 5443333234444555544
No 266
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=97.69 E-value=0.00035 Score=78.84 Aligned_cols=98 Identities=11% Similarity=0.175 Sum_probs=67.8
Q ss_pred CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe-eeCCCeeeeeeeCCCCCeEEE-EEecCCCCCCCCcEEEEEEecCC
Q 004816 203 NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL-VSGSDFYAFPRMDPRGERMAW-IEWHHPNMPWDKAELWVGYISEN 280 (729)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l-t~~~~~~~~~~~SPDG~~la~-~~~~~~~~~~~~~~l~~~d~~~~ 280 (729)
.+|+|+.+.. .+|.++|.++..++.+ +........|+|||||++||| ++...-. ....||+.++..+
T Consensus 319 tkiAfv~~~~--------~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~---g~s~vYv~~L~t~ 387 (912)
T TIGR02171 319 AKLAFRNDVT--------GNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLP---GKSSVYVRNLNAS 387 (912)
T ss_pred eeEEEEEcCC--------CeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCC---CCceEEEEehhcc
Confidence 4578887632 3799999999899988 777777788999999999999 6533311 2466999999843
Q ss_pred CCeeeeEEecCCCCCccccccCceeCCCCc--EEEEEec
Q 004816 281 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDR 317 (729)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~wspDG~--l~~~~~~ 317 (729)
|. ..+.+-.+. ..+.+.+...+|. |+|+++.
T Consensus 388 ~~-~~vkl~ve~-----aaiprwrv~e~gdt~ivyv~~a 420 (912)
T TIGR02171 388 GS-GLVKLPVEN-----AAIPRWRVLENGDTVIVYVSDA 420 (912)
T ss_pred CC-CceEeeccc-----ccccceEecCCCCeEEEEEcCC
Confidence 33 223333332 3444445567776 8888876
No 267
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.66 E-value=0.0016 Score=67.52 Aligned_cols=226 Identities=11% Similarity=0.063 Sum_probs=133.3
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
+-+|+- ..+-|-+||+... +...++...+ -..........++|||+.|+.--+ ...|-++|++.-.++
T Consensus 432 rhVyTg-GkgcVKVWdis~p-g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGe---------astlsiWDLAapTpr 500 (705)
T KOG0639|consen 432 RHVYTG-GKGCVKVWDISQP-GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGE---------ASTLSIWDLAAPTPR 500 (705)
T ss_pred ceeEec-CCCeEEEeeccCC-CCCCccccccccCcccceeeeEecCCCceEEeccc---------cceeeeeeccCCCcc
Confidence 445553 3457888898652 2222222211 011244577889999999876543 256888899875543
Q ss_pred ---EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 235 ---VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 235 ---~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
+|+...-.....+.|||.+ |+|....+.+ |.++|+. +..+ ++.+.+.. .+..-+..++||.-
T Consensus 501 ikaeltssapaCyALa~spDak-vcFsccsdGn-------I~vwDLh-nq~~--VrqfqGht----DGascIdis~dGtk 565 (705)
T KOG0639|consen 501 IKAELTSSAPACYALAISPDAK-VCFSCCSDGN-------IAVWDLH-NQTL--VRQFQGHT----DGASCIDISKDGTK 565 (705)
T ss_pred hhhhcCCcchhhhhhhcCCccc-eeeeeccCCc-------EEEEEcc-ccee--eecccCCC----CCceeEEecCCCce
Confidence 3443322334568899977 8888754433 8899998 6654 66777775 56677889999984
Q ss_pred EEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 312 FFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
+|+..- ...+..+|+..+.. +. ..+|.+..++.+.. | .+.++.+-.+ ..+++++...+.+.-
T Consensus 566 lWTGGl---DntvRcWDlregrq--lq--qhdF~SQIfSLg~c-----P---~~dWlavGMe---ns~vevlh~skp~ky 627 (705)
T KOG0639|consen 566 LWTGGL---DNTVRCWDLREGRQ--LQ--QHDFSSQIFSLGYC-----P---TGDWLAVGME---NSNVEVLHTSKPEKY 627 (705)
T ss_pred eecCCC---ccceeehhhhhhhh--hh--hhhhhhhheecccC-----C---Cccceeeecc---cCcEEEEecCCccce
Confidence 444332 24566778766532 22 12233333333221 1 5566665543 235666677677777
Q ss_pred eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEE
Q 004816 392 LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKV 426 (729)
Q Consensus 392 ~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~ 426 (729)
+|...+.-|-++ +..-+++++.++ .++-...|+.
T Consensus 628 qlhlheScVLSlKFa~cGkwfvStG-kDnlLnawrt 662 (705)
T KOG0639|consen 628 QLHLHESCVLSLKFAYCGKWFVSTG-KDNLLNAWRT 662 (705)
T ss_pred eecccccEEEEEEecccCceeeecC-chhhhhhccC
Confidence 888877777777 555555655544 3434445554
No 268
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.65 E-value=0.0072 Score=65.95 Aligned_cols=226 Identities=14% Similarity=0.095 Sum_probs=125.5
Q ss_pred cCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 145 YGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 145 ~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
|--++..+-++..+......|.|-++|+.+. .-.+.+..+ ....+..+.+|||+..+..+.++. -.+|
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~-~l~Eti~AH----dgaIWsi~~~pD~~g~vT~saDkt-------VkfW 481 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASA-SLVETIRAH----DGAIWSISLSPDNKGFVTGSADKT-------VKFW 481 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehh-hhhhhhhcc----ccceeeeeecCCCCceEEecCCcE-------EEEE
Confidence 3334444456666667677888999999862 223333333 245688899999998776655442 1222
Q ss_pred ----EEEcCCCce-EEe-------eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCC
Q 004816 225 ----AIALNGQNI-QVL-------VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGF 292 (729)
Q Consensus 225 ----~~dl~~g~~-~~l-------t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~ 292 (729)
+.+ ..|.. +.| ..-.+......+||||++||..--+ ..+.++-++ +=+. ...+.++
T Consensus 482 df~l~~~-~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd--------nTVkVyflD-tlKF--flsLYGH 549 (888)
T KOG0306|consen 482 DFKLVVS-VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD--------NTVKVYFLD-TLKF--FLSLYGH 549 (888)
T ss_pred eEEEEec-cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEecc--------CeEEEEEec-ceee--eeeeccc
Confidence 222 22222 211 1223344567899999999865532 234444444 3333 3345555
Q ss_pred CCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeE-EEeeccCccccCCcccccCcceeeeeecCCCCEEEEE
Q 004816 293 DPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV-LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371 (729)
Q Consensus 293 ~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~ 371 (729)
. ..+..+..|||++++.+... ...-.+|=+|. |.- +.+...+ .....+.|+ +..+++|+
T Consensus 550 k----LPV~smDIS~DSklivTgSA-DKnVKiWGLdF--GDCHKS~fAHd---------DSvm~V~F~----P~~~~FFt 609 (888)
T KOG0306|consen 550 K----LPVLSMDISPDSKLIVTGSA-DKNVKIWGLDF--GDCHKSFFAHD---------DSVMSVQFL----PKTHLFFT 609 (888)
T ss_pred c----cceeEEeccCCcCeEEeccC-CCceEEecccc--chhhhhhhccc---------CceeEEEEc----ccceeEEE
Confidence 4 55667789999996655544 33445554443 322 2222211 112345677 45688999
Q ss_pred EEECCeEEEEEEECCC-CceEeeccCCcceEEe-eeeCCEEEEEEeC
Q 004816 372 YRQNGRSYLGILDDFG-HSLSLLDIPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 372 s~~~g~~~ly~~d~~~-g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
..+++...-| |-+. ..++.|......+..+ ..+++.+++.++.
T Consensus 610 ~gKD~kvKqW--Dg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh 654 (888)
T KOG0306|consen 610 CGKDGKVKQW--DGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH 654 (888)
T ss_pred ecCcceEEee--chhhhhhheeeccchheeeeeEEcCCCCeEEeccC
Confidence 9888866554 2111 1234555555667666 4555556665553
No 269
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.0033 Score=67.27 Aligned_cols=212 Identities=11% Similarity=0.065 Sum_probs=123.6
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eE--------
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQ-------- 234 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~-------- 234 (729)
...+|+|+..+ +...+|...+ ...+....|+++|+.|+.-..+. .+.++|....+ ++
T Consensus 196 g~~vylW~~~s--~~v~~l~~~~---~~~vtSv~ws~~G~~LavG~~~g---------~v~iwD~~~~k~~~~~~~~h~~ 261 (484)
T KOG0305|consen 196 GQSVYLWSASS--GSVTELCSFG---EELVTSVKWSPDGSHLAVGTSDG---------TVQIWDVKEQKKTRTLRGSHAS 261 (484)
T ss_pred cceEEEEecCC--CceEEeEecC---CCceEEEEECCCCCEEEEeecCC---------eEEEEehhhccccccccCCcCc
Confidence 44799999988 7778887653 35578889999999987765432 34444433211 00
Q ss_pred ----------EeeeC------------------------CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCC
Q 004816 235 ----------VLVSG------------------------SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISEN 280 (729)
Q Consensus 235 ----------~lt~~------------------------~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~ 280 (729)
.++.| .....+..|++||+++|--. +...++++|.. +
T Consensus 262 rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGg--------nDN~~~Iwd~~-~ 332 (484)
T KOG0305|consen 262 RVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGG--------NDNVVFIWDGL-S 332 (484)
T ss_pred eeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCC--------CccceEeccCC-C
Confidence 11111 12345788999999887433 23458888864 2
Q ss_pred CCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeee
Q 004816 281 GDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 359 (729)
Q Consensus 281 g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l 359 (729)
.. +...+.++. ..+-.++|+|=-+ |+.+... .....|..+|..+|+...-......+....|++
T Consensus 333 ~~--p~~~~~~H~----aAVKA~awcP~q~~lLAsGGG-s~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk-------- 397 (484)
T KOG0305|consen 333 PE--PKFTFTEHT----AAVKALAWCPWQSGLLATGGG-SADRCIKFWNTNTGARIDSVDTGSQVCSLIWSK-------- 397 (484)
T ss_pred cc--ccEEEeccc----eeeeEeeeCCCccCceEEcCC-CcccEEEEEEcCCCcEecccccCCceeeEEEcC--------
Confidence 22 233444444 5566788999655 7666544 445677788888887655544444555666765
Q ss_pred eecCCCCEEEEEEE-ECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCC
Q 004816 360 QSHGEKNLIACSYR-QNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGV 418 (729)
Q Consensus 360 ~~~~~~~~l~~~s~-~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~ 418 (729)
..+.|+.+-. ..+...||.+.. -..+..+..+...|-.+ ..+++..++.++.++
T Consensus 398 ----~~kEi~sthG~s~n~i~lw~~ps-~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DE 453 (484)
T KOG0305|consen 398 ----KYKELLSTHGYSENQITLWKYPS-MKLVAELLGHTSRVLYLALSPDGETIVTGAADE 453 (484)
T ss_pred ----CCCEEEEecCCCCCcEEEEeccc-cceeeeecCCcceeEEEEECCCCCEEEEecccC
Confidence 4444544432 234456776643 23344555555556555 344445555554443
No 270
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.64 E-value=0.009 Score=58.06 Aligned_cols=216 Identities=18% Similarity=0.133 Sum_probs=117.7
Q ss_pred eeeecceecCCCCE-EEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeC--CCeeeeeeeCCCCCeEEEEEecCCCCC
Q 004816 191 VSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSG--SDFYAFPRMDPRGERMAWIEWHHPNMP 266 (729)
Q Consensus 191 ~~~~~~~~SPdG~~-l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~ 266 (729)
.|--+.+++|--.+ ++|.+... ..-+++|..+.+. ..+... --++..=.|||||++||-+..+...
T Consensus 68 aR~Hgi~~~p~~~ravafARrPG--------tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~-- 137 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPG--------TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDP-- 137 (366)
T ss_pred cccCCeecCCCCcceEEEEecCC--------ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCC--
Confidence 34467788885554 45554432 4577889988654 444443 3355666999999998877755533
Q ss_pred CCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec------CCCc---------eEEEEEEcCC
Q 004816 267 WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR------KNGF---------WNLHKWIESN 331 (729)
Q Consensus 267 ~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~------~~g~---------~~l~~~d~~~ 331 (729)
+..-|-+||.. .+ ...+--+.... .....+.|.+||+++.+.+. .-|. -.|..+|..+
T Consensus 138 -~rGViGvYd~r-~~-fqrvgE~~t~G----iGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~at 210 (366)
T COG3490 138 -NRGVIGVYDAR-EG-FQRVGEFSTHG----IGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAAT 210 (366)
T ss_pred -CCceEEEEecc-cc-cceecccccCC----cCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccc
Confidence 44568888876 22 22222233333 56678999999995444432 0111 2355666555
Q ss_pred CeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC----eEEEEEEECCCCceEeeccCCc-------c
Q 004816 332 NEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----RSYLGILDDFGHSLSLLDIPFT-------D 399 (729)
Q Consensus 332 g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g----~~~ly~~d~~~g~~~~lt~~~~-------~ 399 (729)
|+.. +.+ ...+ .-...+..+..- .++.++|...-.| ...|.-.-..++.++.+..+.. .
T Consensus 211 G~liekh~-Lp~~----l~~lSiRHld~g----~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anY 281 (366)
T COG3490 211 GNLIEKHT-LPAS----LRQLSIRHLDIG----RDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANY 281 (366)
T ss_pred cchhhhcc-Cchh----hhhcceeeeeeC----CCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhh
Confidence 5432 111 0000 001111222221 5566766655333 2345555566777776665432 2
Q ss_pred eEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcce
Q 004816 400 IDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLK 434 (729)
Q Consensus 400 v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~ 434 (729)
+.++ ......++..++... .....+|.++|++.
T Consensus 282 igsiA~n~~~glV~lTSP~G--N~~vi~da~tG~vv 315 (366)
T COG3490 282 IGSIAANRRDGLVALTSPRG--NRAVIWDAATGAVV 315 (366)
T ss_pred hhheeecccCCeEEEecCCC--CeEEEEEcCCCcEE
Confidence 3444 344455665555433 23667788999863
No 271
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.64 E-value=0.0033 Score=70.07 Aligned_cols=150 Identities=14% Similarity=0.130 Sum_probs=89.4
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
+..+|..+++-+ .+..|-+++++.. +..+.+-.. ...+....++|+|++|+.++-+ +.|++++++
T Consensus 104 v~g~g~~iaags-dD~~vK~~~~~D~-s~~~~lrgh----~apVl~l~~~p~~~fLAvss~d---------G~v~iw~~~ 168 (933)
T KOG1274|consen 104 VSGSGKMIAAGS-DDTAVKLLNLDDS-SQEKVLRGH----DAPVLQLSYDPKGNFLAVSSCD---------GKVQIWDLQ 168 (933)
T ss_pred EecCCcEEEeec-CceeEEEEecccc-chheeeccc----CCceeeeeEcCCCCEEEEEecC---------ceEEEEEcc
Confidence 333344555543 3446788887762 333333333 3456788899999998777654 579999999
Q ss_pred CCceE-Eeee---C-----CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccc
Q 004816 230 GQNIQ-VLVS---G-----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESP 300 (729)
Q Consensus 230 ~g~~~-~lt~---~-----~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~ 300 (729)
++... .|+. . ...+..++|+|||.++++...+ ..|-+++.. +.+.. ..+..... . ..+
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d--------~~Vkvy~r~-~we~~-f~Lr~~~~-s--s~~ 235 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVD--------NTVKVYSRK-GWELQ-FKLRDKLS-S--SKF 235 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccC--------CeEEEEccC-Cceeh-eeeccccc-c--cce
Confidence 87643 3322 1 2345678999998888887733 347777766 44431 22222221 0 225
Q ss_pred cCceeCCCCc-EEEEEecCCCceEEEEEEcCC
Q 004816 301 TEPKWSSKGE-LFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 301 ~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~ 331 (729)
....|||.|+ |+...- .| +|.++|.++
T Consensus 236 ~~~~wsPnG~YiAAs~~--~g--~I~vWnv~t 263 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTL--DG--QILVWNVDT 263 (933)
T ss_pred EEEEEcCCCcEEeeecc--CC--cEEEEeccc
Confidence 6688999999 544433 34 355556554
No 272
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=97.63 E-value=0.021 Score=55.37 Aligned_cols=249 Identities=12% Similarity=0.052 Sum_probs=123.0
Q ss_pred ccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCccc-CCCCCcccccccccCCceEEEECCEEEEEECCCCcEE
Q 004816 90 RLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDI-TPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLY 168 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~ 168 (729)
.+..++.+|++.|+|..+ +.-.|=+.++.+ |+..+. +..+...+..+-+..+..| +++ ....|-
T Consensus 63 ap~dvapapdG~VWft~q-----g~gaiGhLdP~t-Gev~~ypLg~Ga~Phgiv~gpdg~~W--------itd-~~~aI~ 127 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQ-----GTGAIGHLDPAT-GEVETYPLGSGASPHGIVVGPDGSAW--------ITD-TGLAIG 127 (353)
T ss_pred CccccccCCCCceEEecC-----ccccceecCCCC-CceEEEecCCCCCCceEEECCCCCee--------Eec-CcceeE
Confidence 345566666778888764 233455677663 333222 2222122222222333322 232 222566
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPR 247 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~ 247 (729)
++|.++ .+.++.+-..+-+......++|.|+|+ |.|+....- -=++|..++.++..-.. ...-.+.+
T Consensus 128 R~dpkt--~evt~f~lp~~~a~~nlet~vfD~~G~-lWFt~q~G~---------yGrLdPa~~~i~vfpaPqG~gpyGi~ 195 (353)
T COG4257 128 RLDPKT--LEVTRFPLPLEHADANLETAVFDPWGN-LWFTGQIGA---------YGRLDPARNVISVFPAPQGGGPYGIC 195 (353)
T ss_pred EecCcc--cceEEeecccccCCCcccceeeCCCcc-EEEeecccc---------ceecCcccCceeeeccCCCCCCcceE
Confidence 777766 555443322111124457788999998 566654321 11556655544443221 11235678
Q ss_pred eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeC-CCCcEEEEEecCCCceEEEE
Q 004816 248 MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWS-SKGELFFVTDRKNGFWNLHK 326 (729)
Q Consensus 248 ~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ws-pDG~l~~~~~~~~g~~~l~~ 326 (729)
-.|||+ +.|.+.. ...|-.+|.. ++.. ++...++.. . .. .+-.|+ |.|+ ++++. .+...|++
T Consensus 196 atpdGs-vwyasla-------gnaiaridp~-~~~a-ev~p~P~~~-~--~g-sRriwsdpig~-~witt--wg~g~l~r 258 (353)
T COG4257 196 ATPDGS-VWYASLA-------GNAIARIDPF-AGHA-EVVPQPNAL-K--AG-SRRIWSDPIGR-AWITT--WGTGSLHR 258 (353)
T ss_pred ECCCCc-EEEEecc-------ccceEEcccc-cCCc-ceecCCCcc-c--cc-ccccccCccCc-EEEec--cCCceeeE
Confidence 899998 7777632 3347777766 4532 222222210 0 12 223354 4454 44444 36678999
Q ss_pred EEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 327 WIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 327 ~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
+|+.......-- +.. .+...++.. |....+|.++- +...|.++|..+...+.+..+
T Consensus 259 fdPs~~sW~eypLPgs--------~arpys~rV-----D~~grVW~sea-~agai~rfdpeta~ftv~p~p 315 (353)
T COG4257 259 FDPSVTSWIEYPLPGS--------KARPYSMRV-----DRHGRVWLSEA-DAGAIGRFDPETARFTVLPIP 315 (353)
T ss_pred eCcccccceeeeCCCC--------CCCcceeee-----ccCCcEEeecc-ccCceeecCcccceEEEecCC
Confidence 999876654332 111 000111111 44445555543 233567777777666655543
No 273
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.0016 Score=64.99 Aligned_cols=179 Identities=11% Similarity=0.064 Sum_probs=106.8
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC--C--c--------e
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG--Q--N--------I 233 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g--~--------~ 233 (729)
.+-.++-.. ..+..|+... ...+...+|-|-+...+.+.-. ..|+++..+. . . .
T Consensus 121 vVriy~kss--t~pt~Lks~s---QrnvtclawRPlsaselavgCr---------~gIciW~~s~tln~~r~~~~~s~~~ 186 (445)
T KOG2139|consen 121 VVRIYDKSS--TCPTKLKSVS---QRNVTCLAWRPLSASELAVGCR---------AGICIWSDSRTLNANRNIRMMSTHH 186 (445)
T ss_pred EEEEeccCC--CCCceecchh---hcceeEEEeccCCcceeeeeec---------ceeEEEEcCcccccccccccccccc
Confidence 345555544 5677777652 3456778899977665555332 2355554432 1 1 1
Q ss_pred EEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 234 QVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 234 ~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
-++.. |....+..+|.+||..++-.+.+ ...|.++|++ +|...+ +..... ++++...|||||..
T Consensus 187 ~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g-------sssi~iWdpd-tg~~~p--L~~~gl----gg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 187 LQVLQDPGHNPVTSMQWNEDGTILVTASFG-------SSSIMIWDPD-TGQKIP--LIPKGL----GGFSLLKWSPDGDV 252 (445)
T ss_pred hhheeCCCCceeeEEEEcCCCCEEeecccC-------cceEEEEcCC-CCCccc--ccccCC----CceeeEEEcCCCCE
Confidence 12222 33456778999999988866643 3558889988 676433 322222 56678899999995
Q ss_pred EEEEecCCCceEEEEEE-cCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 312 FFVTDRKNGFWNLHKWI-ESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d-~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
+|.+.- ++..+||-.+ .-+. .+.++ ..+.+....|++ .|+.|+|+. .|...||.+..+++.
T Consensus 253 lfaAt~-davfrlw~e~q~wt~-erw~l-gsgrvqtacWsp------------cGsfLLf~~--sgsp~lysl~f~~~~ 314 (445)
T KOG2139|consen 253 LFAATC-DAVFRLWQENQSWTK-ERWIL-GSGRVQTACWSP------------CGSFLLFAC--SGSPRLYSLTFDGED 314 (445)
T ss_pred EEEecc-cceeeeehhccccee-cceec-cCCceeeeeecC------------CCCEEEEEE--cCCceEEEEeecCCC
Confidence 555544 4667777322 1122 22222 233666788987 788888776 466788888765543
No 274
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.62 E-value=0.0011 Score=72.37 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=89.4
Q ss_pred CCEEEEEECC-CC--cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 154 GDTVIFSNYK-DQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 154 ~~~i~~~~~~-~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
+...+|.... ++ +||..|- ..+.++-.+. -..+.-..|.|+..+++.-+.+ ..+-++|..+
T Consensus 503 P~GyYFatas~D~tArLWs~d~----~~PlRifagh---lsDV~cv~FHPNs~Y~aTGSsD---------~tVRlWDv~~ 566 (707)
T KOG0263|consen 503 PRGYYFATASHDQTARLWSTDH----NKPLRIFAGH---LSDVDCVSFHPNSNYVATGSSD---------RTVRLWDVST 566 (707)
T ss_pred CCceEEEecCCCceeeeeeccc----CCchhhhccc---ccccceEEECCcccccccCCCC---------ceEEEEEcCC
Confidence 3345555432 22 6666654 3344544441 2334557799999986655433 3466678888
Q ss_pred CceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 231 QNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 231 g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
|...++..| .+.....++||+|++|+-.+ + ...|.++|+. +|+. +..+.++. ..+..+.||.||
T Consensus 567 G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~--e------d~~I~iWDl~-~~~~--v~~l~~Ht----~ti~SlsFS~dg 631 (707)
T KOG0263|consen 567 GNSVRIFTGHKGPVTALAFSPCGRYLASGD--E------DGLIKIWDLA-NGSL--VKQLKGHT----GTIYSLSFSRDG 631 (707)
T ss_pred CcEEEEecCCCCceEEEEEcCCCceEeecc--c------CCcEEEEEcC-CCcc--hhhhhccc----CceeEEEEecCC
Confidence 887777655 45677889999999998554 2 2348999998 7765 44455554 667789999999
Q ss_pred cEEEEEecCCCceEEEEEEc
Q 004816 310 ELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 310 ~l~~~~~~~~g~~~l~~~d~ 329 (729)
.++.+... ...+-++|+
T Consensus 632 ~vLasgg~---DnsV~lWD~ 648 (707)
T KOG0263|consen 632 NVLASGGA---DNSVRLWDL 648 (707)
T ss_pred CEEEecCC---CCeEEEEEc
Confidence 85444432 233444455
No 275
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.60 E-value=0.00018 Score=63.97 Aligned_cols=117 Identities=18% Similarity=0.337 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhh
Q 004816 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYE 634 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (729)
.+.-.|++++-. +.+..+-|.||||+.|+.+.- ||+.|..+|+.+|++|.+.+.... . +.+.|.
T Consensus 88 ~AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdardffg~y-----------y-ddDv~y- 152 (227)
T COG4947 88 RAYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDARDFFGGY-----------Y-DDDVYY- 152 (227)
T ss_pred HHHHHHHHHhhc--CCCccccccchhhhhhhhhheeChhHhhhheeecceeeHHHhcccc-----------c-cCceee-
Confidence 344457777633 466888999999999998887 999999999999999987653321 1 111121
Q ss_pred cCcccccCCCC----------CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 635 KSPINFVDKFS----------CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 635 ~sp~~~~~~i~----------~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
++|..++..+. ..+.+..|.+|+.. .+.+++-+.|.++.++..+.+..+-.|.
T Consensus 153 nsP~dylpg~~dp~~l~rlr~~~~vfc~G~e~~~L--~~~~~L~~~l~dKqipaw~~~WggvaHd 215 (227)
T COG4947 153 NSPSDYLPGLADPFRLERLRRIDMVFCIGDEDPFL--DNNQHLSRLLSDKQIPAWMHVWGGVAHD 215 (227)
T ss_pred cChhhhccCCcChHHHHHHhhccEEEEecCccccc--cchHHHHHHhccccccHHHHHhcccccc
Confidence 55555544443 34677888888875 3567788888887777777776665664
No 276
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.60 E-value=0.015 Score=60.27 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=139.2
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+..+++|..+ .++.....+|.+-+|+.++ .....|... ...+...+|+-+|.+|+-..-+ ..+.
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G--~l~~tl~~H----kgPI~slKWnk~G~yilS~~vD---------~tti 301 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDG--NLISTLGQH----KGPIFSLKWNKKGTYILSGGVD---------GTTI 301 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCc--hhhhhhhcc----CCceEEEEEcCCCCEEEeccCC---------ccEE
Confidence 4566777633 4455555788888998886 555555555 3456788999999998765443 3577
Q ss_pred EEEcCCCceEEeeeCCCe-eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 225 AIALNGQNIQVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 225 ~~dl~~g~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
++|..+|+.++..+-... .-...|=-+.+ |.... ....|+++-+.. . +++..+.++. ..+..+
T Consensus 302 lwd~~~g~~~q~f~~~s~~~lDVdW~~~~~---F~ts~------td~~i~V~kv~~-~--~P~~t~~GH~----g~V~al 365 (524)
T KOG0273|consen 302 LWDAHTGTVKQQFEFHSAPALDVDWQSNDE---FATSS------TDGCIHVCKVGE-D--RPVKTFIGHH----GEVNAL 365 (524)
T ss_pred EEeccCceEEEeeeeccCCccceEEecCce---EeecC------CCceEEEEEecC-C--Ccceeeeccc----CceEEE
Confidence 889988888776542211 12234533322 22212 234477777762 2 2355566666 677889
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.|.|.|.|+..+.+ .+...||-..- ++-...|-....++....|+|...- ..-+ ..+..+.++.-++...+|-+
T Consensus 366 k~n~tg~LLaS~Sd-D~TlkiWs~~~-~~~~~~l~~Hskei~t~~wsp~g~v-~~n~---~~~~~l~sas~dstV~lwdv 439 (524)
T KOG0273|consen 366 KWNPTGSLLASCSD-DGTLKIWSMGQ-SNSVHDLQAHSKEIYTIKWSPTGPV-TSNP---NMNLMLASASFDSTVKLWDV 439 (524)
T ss_pred EECCCCceEEEecC-CCeeEeeecCC-CcchhhhhhhccceeeEeecCCCCc-cCCC---cCCceEEEeecCCeEEEEEc
Confidence 99999996655555 57777775322 2222222222223334455542111 0000 33344555555677777744
Q ss_pred ECCCC-ceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 384 DDFGH-SLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 384 d~~~g-~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
..| .+..++.+...|.++ ..++++++...+.. ..+...+.+.+++
T Consensus 440 --~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~d---g~V~iws~~~~~l 486 (524)
T KOG0273|consen 440 --ESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLD---GCVHIWSTKTGKL 486 (524)
T ss_pred --cCCceeEeeccCCCceEEEEecCCCcEEEecCCC---CeeEeccccchhe
Confidence 444 455677777788888 55556665554432 2345555555553
No 277
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.59 E-value=0.0041 Score=64.18 Aligned_cols=215 Identities=11% Similarity=0.054 Sum_probs=124.0
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccc-cchhhhHHHhhCCcEEEEecCCCCCCC-
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARG-ILNLSIQYWTSRGWAFVDVNYGGSTGY- 535 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~-~~~~~~~~la~~G~~v~~~d~rGs~g~- 535 (729)
-+..++.. ++.++- -+|.|.. .++...+||++||........ ....+.+.|.+.||.++.+..+.-...
T Consensus 62 ~e~~~L~~--~~~~fl-aL~~~~~------~~~~~G~vIilp~~g~~~d~p~~i~~LR~~L~~~GW~Tlsit~P~~~~~~ 132 (310)
T PF12048_consen 62 DEVQWLQA--GEERFL-ALWRPAN------SAKPQGAVIILPDWGEHPDWPGLIAPLRRELPDHGWATLSITLPDPAPPA 132 (310)
T ss_pred hhcEEeec--CCEEEE-EEEeccc------CCCCceEEEEecCCCCCCCcHhHHHHHHHHhhhcCceEEEecCCCccccc
Confidence 45555655 455555 4566654 245678999999964444332 344577888999999999877641100
Q ss_pred --------------chhHHH--------------hhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHH
Q 004816 536 --------------GREFRE--------------RLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLA 587 (729)
Q Consensus 536 --------------g~~~~~--------------~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~ 587 (729)
+..-.. .....+-.....-+.+++.++.+++ ..+|+|+||+.|+++++.
T Consensus 133 ~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~---~~~ivlIg~G~gA~~~~~ 209 (310)
T PF12048_consen 133 SPNRATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQG---GKNIVLIGHGTGAGWAAR 209 (310)
T ss_pred CCccCCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcC---CceEEEEEeChhHHHHHH
Confidence 000000 0000000011333556666776664 245999999999999999
Q ss_pred HHh--CCCcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHH
Q 004816 588 ALA--FRDTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQAR 665 (729)
Q Consensus 588 ~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~ 665 (729)
++. .+..+.+.|++++........ ..-...+.+++.|+|=|++.+ .......+.
T Consensus 210 ~la~~~~~~~daLV~I~a~~p~~~~n-----------------------~~l~~~la~l~iPvLDi~~~~-~~~~~~~a~ 265 (310)
T PF12048_consen 210 YLAEKPPPMPDALVLINAYWPQPDRN-----------------------PALAEQLAQLKIPVLDIYSAD-NPASQQTAK 265 (310)
T ss_pred HHhcCCCcccCeEEEEeCCCCcchhh-----------------------hhHHHHhhccCCCEEEEecCC-ChHHHHHHH
Confidence 998 444588999998864332210 011123567789999998876 322222222
Q ss_pred HHHHHHHhCC-CCEEEEEECCCCcccCCcccHHHHHHHHHHHHHHH
Q 004816 666 KIYKALKENG-LPVALVEYEGEQHGFRKAENIKFTLEQQMVFFARV 710 (729)
Q Consensus 666 ~~~~~l~~~g-~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~~ 710 (729)
.=.+..+++. ...+-+.+++..|.... ......++|..|+.++
T Consensus 266 ~R~~~a~r~~~~~YrQ~~L~~~~~~~~~--~~~~l~~rIrGWL~~~ 309 (310)
T PF12048_consen 266 QRKQAAKRNKKPDYRQIQLPGLPDNPSG--WQEQLLRRIRGWLKRH 309 (310)
T ss_pred HHHHHHHhccCCCceeEecCCCCCChhh--HHHHHHHHHHHHHHhh
Confidence 2222233332 34566677776665432 2223888889998875
No 278
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.57 E-value=0.00016 Score=69.78 Aligned_cols=88 Identities=16% Similarity=0.218 Sum_probs=53.1
Q ss_pred EEEEcCCCCCCccccchhhhHHHhhCCcE---EEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 495 LVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 495 vv~~hGg~~~~~~~~~~~~~~~la~~G~~---v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
||++||.. ......|..+.++|.++||. |++++|....+ ........ .......++.+.++.+++. ...
T Consensus 4 VVlVHG~~-~~~~~~w~~~~~~l~~~GY~~~~vya~tyg~~~~--~~~~~~~~--~~~~~~~~l~~fI~~Vl~~--TGa- 75 (219)
T PF01674_consen 4 VVLVHGTG-GNAYSNWSTLAPYLKAAGYCDSEVYALTYGSGNG--SPSVQNAH--MSCESAKQLRAFIDAVLAY--TGA- 75 (219)
T ss_dssp EEEE--TT-TTTCGGCCHHHHHHHHTT--CCCEEEE--S-CCH--HTHHHHHH--B-HHHHHHHHHHHHHHHHH--HT--
T ss_pred EEEECCCC-cchhhCHHHHHHHHHHcCCCcceeEeccCCCCCC--CCcccccc--cchhhHHHHHHHHHHHHHh--hCC-
Confidence 78899973 33456678899999999999 89999943222 11111111 1112356777788877765 345
Q ss_pred cEEEEEcChHHHHHHHHHh
Q 004816 572 RLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~ 590 (729)
||-|+|||+||.++-+++.
T Consensus 76 kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 76 KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp -EEEEEETCHHHHHHHHHH
T ss_pred EEEEEEcCCcCHHHHHHHH
Confidence 9999999999999988875
No 279
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.56 E-value=9.7e-05 Score=76.63 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCCCEEEEEcCCCCCC-ccccchhhhHHH-hh--CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC
Q 004816 490 EKPPLLVKSHGGPTSE-ARGILNLSIQYW-TS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGS 565 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~-~~~~~~~~~~~l-a~--~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 565 (729)
.+.|++|++||..... .......+...+ .. .+++|+++|+.... ...|..+.... ......+...++.|...
T Consensus 69 ~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a--~~~Y~~a~~n~--~~vg~~la~~l~~L~~~ 144 (331)
T PF00151_consen 69 PSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGA--SNNYPQAVANT--RLVGRQLAKFLSFLINN 144 (331)
T ss_dssp TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHH--SS-HHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhc--cccccchhhhH--HHHHHHHHHHHHHHHhh
Confidence 4679999999975544 233334444544 44 58999999985311 11222221100 01134455667777755
Q ss_pred CCCCCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEEecccc
Q 004816 566 GKADEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYGVA 605 (729)
Q Consensus 566 ~~~d~~ri~i~G~S~GG~~a~~~~~-~~~--~~~a~v~~~~~~ 605 (729)
..++.++|.|+|||+||++|..+.. ... ++..+..+.|..
T Consensus 145 ~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDPAg 187 (331)
T PF00151_consen 145 FGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDPAG 187 (331)
T ss_dssp H---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-B-
T ss_pred cCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCccc
Confidence 5678999999999999999999987 443 788888887753
No 280
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=97.56 E-value=0.00095 Score=67.56 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=93.0
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
.+++...++.|-.||..+ ...++--+. +.++.....+++|..|.....+ ..|-++|+.+.++++.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs--~~~~~sv~~----gg~vtSl~ls~~g~~lLsssRD---------dtl~viDlRt~eI~~~ 378 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRS--ADKTRSVPL----GGRVTSLDLSMDGLELLSSSRD---------DTLKVIDLRTKEIRQT 378 (459)
T ss_pred eeeecccccceEEEeccC--CceeeEeec----CcceeeEeeccCCeEEeeecCC---------CceeeeecccccEEEE
Confidence 344544566899999776 443333333 3578888999999998766433 3588899999888877
Q ss_pred eeCCC-----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-
Q 004816 237 VSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 237 t~~~~-----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~- 310 (729)
....+ ..+-..|||||+++|--+. +..||++++. +|++..+......+ ..+....|+|-|.
T Consensus 379 ~sA~g~k~asDwtrvvfSpd~~YvaAGS~--------dgsv~iW~v~-tgKlE~~l~~s~s~----~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 379 FSAEGFKCASDWTRVVFSPDGSYVAAGSA--------DGSVYIWSVF-TGKLEKVLSLSTSN----AAITSLSWNPSGSG 445 (459)
T ss_pred eeccccccccccceeEECCCCceeeeccC--------CCcEEEEEcc-CceEEEEeccCCCC----cceEEEEEcCCCch
Confidence 54332 2456789999999886552 3459999999 78875554444444 4567889999998
Q ss_pred EEEEEecCCCceEEE
Q 004816 311 LFFVTDRKNGFWNLH 325 (729)
Q Consensus 311 l~~~~~~~~g~~~l~ 325 (729)
++ .++. +....||
T Consensus 446 Ll-sadk-~~~v~lW 458 (459)
T KOG0288|consen 446 LL-SADK-QKAVTLW 458 (459)
T ss_pred hh-cccC-CcceEec
Confidence 44 3333 3444444
No 281
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.56 E-value=0.045 Score=52.77 Aligned_cols=159 Identities=9% Similarity=0.015 Sum_probs=96.8
Q ss_pred CCceEEEE---CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 146 GGGAFRIF---GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 146 ~~~~~~~~---~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
.+..|+.+ ..+.+.+...++.+.+||+.+ |+....... +..+....||++|+.++++.++.-.. .+.
T Consensus 52 tGavW~~Did~~s~~liTGSAD~t~kLWDv~t--Gk~la~~k~----~~~Vk~~~F~~~gn~~l~~tD~~mg~----~~~ 121 (327)
T KOG0643|consen 52 TGAVWCCDIDWDSKHLITGSADQTAKLWDVET--GKQLATWKT----NSPVKRVDFSFGGNLILASTDKQMGY----TCF 121 (327)
T ss_pred CceEEEEEecCCcceeeeccccceeEEEEcCC--CcEEEEeec----CCeeEEEeeccCCcEEEEEehhhcCc----ceE
Confidence 35566665 225566666677889999998 543332222 23456667999999999988765333 255
Q ss_pred EEEEEcC-------CCc-eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCC
Q 004816 223 IVAIALN-------GQN-IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDP 294 (729)
Q Consensus 223 l~~~dl~-------~g~-~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~ 294 (729)
|.++++. +.+ ...+.......+..-|+|-|+.|.+.. ....|-.+|+. +|.. -+.......
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Gh--------e~G~is~~da~-~g~~-~v~s~~~h~- 190 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGH--------EDGSISIYDAR-TGKE-LVDSDEEHS- 190 (327)
T ss_pred EEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEec--------CCCcEEEEEcc-cCce-eeechhhhc-
Confidence 6666665 334 234433445566788999999987654 23448889988 6642 122222233
Q ss_pred CccccccCceeCCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 295 TIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
..+..+++|+|...+.++.. .....| +|..+
T Consensus 191 ---~~Ind~q~s~d~T~FiT~s~-Dttakl--~D~~t 221 (327)
T KOG0643|consen 191 ---SKINDLQFSRDRTYFITGSK-DTTAKL--VDVRT 221 (327)
T ss_pred ---cccccccccCCcceEEeccc-Ccccee--eeccc
Confidence 56778999999864444443 344444 35444
No 282
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=97.53 E-value=0.026 Score=58.43 Aligned_cols=254 Identities=11% Similarity=0.001 Sum_probs=129.8
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCc
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
+.+.++.|+- |..+.. .. .+|...||..+.. ....+ .. |.-.+.++-|.++ .-+.+...++.
T Consensus 236 kdVT~L~Wn~~G~~Lat-G~---~~G~~riw~~~G~---l~~tl-~~--------HkgPI~slKWnk~G~yilS~~vD~t 299 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLAT-GS---EDGEARIWNKDGN---LISTL-GQ--------HKGPIFSLKWNKKGTYILSGGVDGT 299 (524)
T ss_pred CCcceEEecCCCCeEEE-ee---cCcEEEEEecCch---hhhhh-hc--------cCCceEEEEEcCCCCEEEeccCCcc
Confidence 4567888886 444433 21 4677777754311 11111 11 1111223334433 33455566788
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCCCeeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGSDFYAF 245 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~~~~~~ 245 (729)
+.+||..+ ++..+..... ....-|..|--+.++. ++..+ ..|++.-++...+ +.+....+..+.
T Consensus 300 tilwd~~~--g~~~q~f~~~---s~~~lDVdW~~~~~F~--ts~td--------~~i~V~kv~~~~P~~t~~GH~g~V~a 364 (524)
T KOG0273|consen 300 TILWDAHT--GTVKQQFEFH---SAPALDVDWQSNDEFA--TSSTD--------GCIHVCKVGEDRPVKTFIGHHGEVNA 364 (524)
T ss_pred EEEEeccC--ceEEEeeeec---cCCccceEEecCceEe--ecCCC--------ceEEEEEecCCCcceeeecccCceEE
Confidence 99999887 6665544331 1111455675555432 22211 2355555544333 445555566788
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC------C
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK------N 319 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~------~ 319 (729)
..|.|.|+.|+-.+ + ...|-++... .+.. ...+..+. ..+....|||+|.+....+.. .
T Consensus 365 lk~n~tg~LLaS~S-d-------D~TlkiWs~~-~~~~--~~~l~~Hs----kei~t~~wsp~g~v~~n~~~~~~l~sas 429 (524)
T KOG0273|consen 365 LKWNPTGSLLASCS-D-------DGTLKIWSMG-QSNS--VHDLQAHS----KEIYTIKWSPTGPVTSNPNMNLMLASAS 429 (524)
T ss_pred EEECCCCceEEEec-C-------CCeeEeeecC-CCcc--hhhhhhhc----cceeeEeecCCCCccCCCcCCceEEEee
Confidence 89999999888666 2 3446666544 2221 22233333 344567788877421111110 0
Q ss_pred CceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc
Q 004816 320 GFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT 398 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~ 398 (729)
-...+-.+|...|... .++... .|.+ ++.|+ .++..+.+.+.+|..+|| +.+++++-+--.+..
T Consensus 430 ~dstV~lwdv~~gv~i~~f~kH~----~pVy-----svafS----~~g~ylAsGs~dg~V~iw--s~~~~~l~~s~~~~~ 494 (524)
T KOG0273|consen 430 FDSTVKLWDVESGVPIHTLMKHQ----EPVY-----SVAFS----PNGRYLASGSLDGCVHIW--STKTGKLVKSYQGTG 494 (524)
T ss_pred cCCeEEEEEccCCceeEeeccCC----CceE-----EEEec----CCCcEEEecCCCCeeEec--cccchheeEeecCCC
Confidence 1123455677666544 333433 3333 34565 344555666678888887 455666554445555
Q ss_pred ceEEe
Q 004816 399 DIDNI 403 (729)
Q Consensus 399 ~v~~~ 403 (729)
.|..+
T Consensus 495 ~Ifel 499 (524)
T KOG0273|consen 495 GIFEL 499 (524)
T ss_pred eEEEE
Confidence 55555
No 283
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=97.52 E-value=0.039 Score=56.59 Aligned_cols=146 Identities=15% Similarity=0.105 Sum_probs=95.4
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceee-ecceecCCCCEEEEEEeccCCC---------CCC
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY-ADGIFDPRFNRYVTVREDRRQD---------ALN 218 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~-~~~~~SPdG~~l~~~~~~~~~~---------~~~ 218 (729)
+|...++.+++.+ ..-.|+.++.++ +..+.++...++...++ ++..++|+|. |+|+....... ...
T Consensus 121 ~f~~~ggdL~VaD-AYlGL~~V~p~g--~~a~~l~~~~~G~~~kf~N~ldI~~~g~-vyFTDSSsk~~~rd~~~a~l~g~ 196 (376)
T KOG1520|consen 121 RFDKKGGDLYVAD-AYLGLLKVGPEG--GLAELLADEAEGKPFKFLNDLDIDPEGV-VYFTDSSSKYDRRDFVFAALEGD 196 (376)
T ss_pred EeccCCCeEEEEe-cceeeEEECCCC--CcceeccccccCeeeeecCceeEcCCCe-EEEeccccccchhheEEeeecCC
Confidence 4554454554443 333599999988 88888887654444444 7788999665 56664322111 122
Q ss_pred cceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC-CCCCcc
Q 004816 219 STTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDPTIV 297 (729)
Q Consensus 219 ~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~-~~~~~~ 297 (729)
....|+.+|..+.+.+.|..+-.+.++.+.|||++.+.|+.... .+|..+=++ +.+......+.. .+
T Consensus 197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~-------~ri~rywi~-g~k~gt~EvFa~~LP---- 264 (376)
T KOG1520|consen 197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT-------ARIKRYWIK-GPKAGTSEVFAEGLP---- 264 (376)
T ss_pred CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc-------ceeeeeEec-CCccCchhhHhhcCC----
Confidence 35679999999888888888888999999999999999988432 235444444 332222234433 44
Q ss_pred ccccCceeCCCCc
Q 004816 298 ESPTEPKWSSKGE 310 (729)
Q Consensus 298 ~~~~~~~wspDG~ 310 (729)
++..+++-+++|.
T Consensus 265 G~PDNIR~~~~G~ 277 (376)
T KOG1520|consen 265 GYPDNIRRDSTGH 277 (376)
T ss_pred CCCcceeECCCCC
Confidence 5667888888887
No 284
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.52 E-value=0.02 Score=59.87 Aligned_cols=240 Identities=14% Similarity=0.057 Sum_probs=123.2
Q ss_pred EECCCCcEEEEeCCCCC---CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 160 SNYKDQRLYKHSIDSKD---SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 160 ~~~~~~~l~~~d~~~~~---~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
+...+-.+..||+++=+ ..-++|.+.+ ...++...|||.|.+|+++... .+.-++|.+|-+.-..
T Consensus 184 sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E---~h~i~sl~ys~Tg~~iLvvsg~---------aqakl~DRdG~~~~e~ 251 (641)
T KOG0772|consen 184 SGSLDYTVKFWDFQGMDASMRSFRQLQPCE---THQINSLQYSVTGDQILVVSGS---------AQAKLLDRDGFEIVEF 251 (641)
T ss_pred eccccceEEEEecccccccchhhhccCccc---ccccceeeecCCCCeEEEEecC---------cceeEEccCCceeeee
Confidence 33345578889987510 1234555542 3556788999999999988763 4566778877554444
Q ss_pred eeCC----------Ce---eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC-CCccccccC
Q 004816 237 VSGS----------DF---YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-PTIVESPTE 302 (729)
Q Consensus 237 t~~~----------~~---~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~ 302 (729)
..|. +. .+.-+|.|+.+..+.+...+ ..|.++++. +.+ ....++.... ......+..
T Consensus 252 ~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~D-------gtlRiWdv~-~~k-~q~qVik~k~~~g~Rv~~ts 322 (641)
T KOG0772|consen 252 SKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYD-------GTLRIWDVN-NTK-SQLQVIKTKPAGGKRVPVTS 322 (641)
T ss_pred eccchhhhhhhccCCceeeeeccccccCcccceEEecCC-------CcEEEEecC-Cch-hheeEEeeccCCCcccCcee
Confidence 3332 12 23448999999886655322 337777776 322 1222222211 011134456
Q ss_pred ceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 303 PKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 303 ~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
-.|++||+++..... .|.-++|-..-.+-...-.... +... ..++..+.|.. +++.| .+...++.-.||-
T Consensus 323 C~~nrdg~~iAagc~-DGSIQ~W~~~~~~v~p~~~vk~-AH~~----g~~Itsi~FS~---dg~~L-lSRg~D~tLKvWD 392 (641)
T KOG0772|consen 323 CAWNRDGKLIAAGCL-DGSIQIWDKGSRTVRPVMKVKD-AHLP----GQDITSISFSY---DGNYL-LSRGFDDTLKVWD 392 (641)
T ss_pred eecCCCcchhhhccc-CCceeeeecCCcccccceEeee-ccCC----CCceeEEEecc---ccchh-hhccCCCceeeee
Confidence 689999995444443 4766776431111111111111 0100 01334556663 55544 4444566666775
Q ss_pred EECCCCceE---eeccCCcceEEeeeeCCEEEEEEeCCC---CCceEEEEEcCC
Q 004816 383 LDDFGHSLS---LLDIPFTDIDNITLGNDCLFVEGASGV---EPSSVAKVTLDD 430 (729)
Q Consensus 383 ~d~~~g~~~---~lt~~~~~v~~~~~~~~~~~~~~~~~~---~~~~ly~~d~~~ 430 (729)
+.--..-+. -|...+..-...++++.++++...+.. +++.|+.+|..+
T Consensus 393 Lrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 393 LRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 432111111 112222222333566677777765543 234477776544
No 285
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=97.49 E-value=0.0054 Score=60.98 Aligned_cols=219 Identities=10% Similarity=0.061 Sum_probs=110.4
Q ss_pred CeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-----hhHHHhhCCcEEEEecCCCCCCCchhHHHhh
Q 004816 469 GQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-----SIQYWTSRGWAFVDVNYGGSTGYGREFRERL 543 (729)
Q Consensus 469 G~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-----~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~ 543 (729)
-..+++.+.-.. .++.|++|-.|.-+- .....|.. ..+.+. ..|.++-+|.+|.-.-...+..
T Consensus 8 ~G~v~V~v~G~~--------~~~kp~ilT~HDvGl-Nh~scF~~ff~~~~m~~i~-~~f~i~Hi~aPGqe~ga~~~p~-- 75 (283)
T PF03096_consen 8 YGSVHVTVQGDP--------KGNKPAILTYHDVGL-NHKSCFQGFFNFEDMQEIL-QNFCIYHIDAPGQEEGAATLPE-- 75 (283)
T ss_dssp TEEEEEEEESS----------TTS-EEEEE--TT---HHHHCHHHHCSHHHHHHH-TTSEEEEEE-TTTSTT-----T--
T ss_pred ceEEEEEEEecC--------CCCCceEEEeccccc-cchHHHHHHhcchhHHHHh-hceEEEEEeCCCCCCCcccccc--
Confidence 346777676442 346899999998532 11221322 234443 4699999999986542222211
Q ss_pred ccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChhHH---h-hh-----
Q 004816 544 LGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLSML---R-AE----- 613 (729)
Q Consensus 544 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~~~---~-~~----- 613 (729)
.+..-.++++.+.+..+++...+ +.+.-+|--+|+++-.+++. +|+++.++|++++...-..+ . ..
T Consensus 76 --~y~yPsmd~LAe~l~~Vl~~f~l--k~vIg~GvGAGAnIL~rfAl~~p~~V~GLiLvn~~~~~~gw~Ew~~~K~~~~~ 151 (283)
T PF03096_consen 76 --GYQYPSMDQLAEMLPEVLDHFGL--KSVIGFGVGAGANILARFALKHPERVLGLILVNPTCTAAGWMEWFYQKLSSWL 151 (283)
T ss_dssp --T-----HHHHHCTHHHHHHHHT-----EEEEEETHHHHHHHHHHHHSGGGEEEEEEES---S---HHHHHHHHHH---
T ss_pred --cccccCHHHHHHHHHHHHHhCCc--cEEEEEeeccchhhhhhccccCccceeEEEEEecCCCCccHHHHHHHHHhccc
Confidence 11112355555555555554333 57999999999999999888 99999999999886532211 1 00
Q ss_pred ------cchhhhhhhhhhcC----------------------Ch-------hhhhhcCcc-cccCCCCCCEEEEEeCCCC
Q 004816 614 ------THKFESRYIDNLVG----------------------SE-------KDYYEKSPI-NFVDKFSCPIILFQGLEDK 657 (729)
Q Consensus 614 ------~~~~~~~~~~~~~~----------------------~~-------~~~~~~sp~-~~~~~i~~PvL~i~G~~D~ 657 (729)
+.......+...++ ++ ..|..+..+ ...+...+|+|++.|+..+
T Consensus 152 L~~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~Sp 231 (283)
T PF03096_consen 152 LYSYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERINPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNSP 231 (283)
T ss_dssp ----CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-TTHHHHHHHHHHHHT-----SECTTCCS-EEEEEETTST
T ss_pred ccccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCCc
Confidence 01111111111221 10 011111111 1244556999999999876
Q ss_pred CCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 658 VVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 658 ~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
. .+++.++..+|-. .+.+++.++++|=. ...+......+.+.=|++
T Consensus 232 ~--~~~vv~~ns~Ldp--~~ttllkv~dcGgl-V~eEqP~klaea~~lFlQ 277 (283)
T PF03096_consen 232 H--VDDVVEMNSKLDP--TKTTLLKVADCGGL-VLEEQPGKLAEAFKLFLQ 277 (283)
T ss_dssp T--HHHHHHHHHHS-C--CCEEEEEETT-TT--HHHH-HHHHHHHHHHHHH
T ss_pred c--hhhHHHHHhhcCc--ccceEEEecccCCc-ccccCcHHHHHHHHHHHc
Confidence 5 4777888888854 47899999998653 233444455555444443
No 286
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.49 E-value=0.0018 Score=70.96 Aligned_cols=195 Identities=15% Similarity=0.102 Sum_probs=112.8
Q ss_pred ccccCCceEEEE--C-CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCC
Q 004816 142 AQEYGGGAFRIF--G-DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (729)
Q Consensus 142 ~~~~~~~~~~~~--~-~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~ 218 (729)
+.+..+..|..+ + ++.+.+..++..+-+|.+++ .....+-.+ ....+++..|+|-|-+ |+...+..
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t--~s~~V~y~G---H~~PVwdV~F~P~GyY--Fatas~D~---- 515 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDT--WSCLVIYKG---HLAPVWDVQFAPRGYY--FATASHDQ---- 515 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeeccc--ceeEEEecC---CCcceeeEEecCCceE--EEecCCCc----
Confidence 344455544432 2 24555666666666666665 333333222 1345688899999954 44333221
Q ss_pred cceEEEEEEcCCCceEEeeeCCCe-eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 219 STTEIVAIALNGQNIQVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 219 ~~~~l~~~dl~~g~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
...||..|- ..+.++..+.-. ..-..|.|++.+++--+. ...+.++|+. +|.. ++++.++.
T Consensus 516 -tArLWs~d~--~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs--------D~tVRlWDv~-~G~~--VRiF~GH~---- 577 (707)
T KOG0263|consen 516 -TARLWSTDH--NKPLRIFAGHLSDVDCVSFHPNSNYVATGSS--------DRTVRLWDVS-TGNS--VRIFTGHK---- 577 (707)
T ss_pred -eeeeeeccc--CCchhhhcccccccceEEECCcccccccCCC--------CceEEEEEcC-CCcE--EEEecCCC----
Confidence 356776664 445555444332 333689999998874432 2347777888 6765 78888887
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
..+..+++||+|+.+..... . ..|.+||+.+|+... +......+ .++.|.. ++ .++++...+.
T Consensus 578 ~~V~al~~Sp~Gr~LaSg~e-d--~~I~iWDl~~~~~v~~l~~Ht~ti---------~SlsFS~---dg-~vLasgg~Dn 641 (707)
T KOG0263|consen 578 GPVTALAFSPCGRYLASGDE-D--GLIKIWDLANGSLVKQLKGHTGTI---------YSLSFSR---DG-NVLASGGADN 641 (707)
T ss_pred CceEEEEEcCCCceEeeccc-C--CcEEEEEcCCCcchhhhhcccCce---------eEEEEec---CC-CEEEecCCCC
Confidence 78889999999984434333 2 456677887765433 22222222 2344542 44 4555555555
Q ss_pred eEEEE
Q 004816 377 RSYLG 381 (729)
Q Consensus 377 ~~~ly 381 (729)
...||
T Consensus 642 sV~lW 646 (707)
T KOG0263|consen 642 SVRLW 646 (707)
T ss_pred eEEEE
Confidence 56666
No 287
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=97.48 E-value=0.00027 Score=47.81 Aligned_cols=38 Identities=13% Similarity=0.233 Sum_probs=26.6
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWV 274 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~ 274 (729)
++++........|.|||||++|+|++.... ....+||+
T Consensus 2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~---~g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRND---RGSFDIYV 39 (39)
T ss_dssp EEES-SSSSEEEEEE-TTSSEEEEEEECT-----SSEEEEE
T ss_pred cCcccCCccccCEEEecCCCEEEEEecCCC---CCCcCEEC
Confidence 577777778889999999999999995442 13455764
No 288
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.39 E-value=0.03 Score=55.11 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=81.4
Q ss_pred CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCC
Q 004816 162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGS 240 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~ 240 (729)
-.+|+|.+||+.+. +-.+.|+.. -..+...+||+||++|+..+.+. .+-.+|+-.|.+ +++- -.
T Consensus 42 c~nG~vvI~D~~T~-~iar~lsaH----~~pi~sl~WS~dgr~LltsS~D~---------si~lwDl~~gs~l~rir-f~ 106 (405)
T KOG1273|consen 42 CANGRVVIYDFDTF-RIARMLSAH----VRPITSLCWSRDGRKLLTSSRDW---------SIKLWDLLKGSPLKRIR-FD 106 (405)
T ss_pred ccCCcEEEEEcccc-chhhhhhcc----ccceeEEEecCCCCEeeeecCCc---------eeEEEeccCCCceeEEE-cc
Confidence 35788999999883 334555554 34568889999999988776543 467778877764 3332 22
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC-CCccccccCceeCCCCcEEEEEecCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-PTIVESPTEPKWSSKGELFFVTDRKN 319 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~~~~~~~~~~wspDG~l~~~~~~~~ 319 (729)
....+..|.|-.+..+.+..-+ ..-++++++ ++. ..+++..+ .+-........+.+-|+.+++... .
T Consensus 107 spv~~~q~hp~k~n~~va~~~~-------~sp~vi~~s-~~~---h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts-K 174 (405)
T KOG1273|consen 107 SPVWGAQWHPRKRNKCVATIME-------ESPVVIDFS-DPK---HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS-K 174 (405)
T ss_pred CccceeeeccccCCeEEEEEec-------CCcEEEEec-CCc---eeeccCCCccccccccccccccCCCCEEEEecC-c
Confidence 2344567788544444443211 114566776 443 23333332 111122333457788886666655 4
Q ss_pred CceEEEEEEcCCCe
Q 004816 320 GFWNLHKWIESNNE 333 (729)
Q Consensus 320 g~~~l~~~d~~~g~ 333 (729)
|+ |.+++.++-+
T Consensus 175 Gk--llv~~a~t~e 186 (405)
T KOG1273|consen 175 GK--LLVYDAETLE 186 (405)
T ss_pred ce--EEEEecchhe
Confidence 54 4445655543
No 289
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=97.39 E-value=0.00096 Score=72.91 Aligned_cols=133 Identities=17% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc----------------hhhhHHHhhCCcEEEEecCCC
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL----------------NLSIQYWTSRGWAFVDVNYGG 531 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~----------------~~~~~~la~~G~~v~~~d~rG 531 (729)
.+..+..|++...+ ..+..|+|++++|||+....... ...-..|.+. ..++.+|.+-
T Consensus 59 ~~~~lFyw~~~s~~------~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~-~~~l~iDqP~ 131 (462)
T PTZ00472 59 TDKHYFYWAFGPRN------GNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE-AYVIYVDQPA 131 (462)
T ss_pred CCceEEEEEEEcCC------CCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc-cCeEEEeCCC
Confidence 36778889988654 24567999999999986532210 0001123333 5678888643
Q ss_pred CCCCchhHHHhhccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh----CC-------CcceEEE
Q 004816 532 STGYGREFRERLLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA----FR-------DTFKAGA 599 (729)
Q Consensus 532 s~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~----~~-------~~~~a~v 599 (729)
+.|++..-... ....-....+|+..+++...++ +.....++.|+|+||||..+..++. +. -.+++++
T Consensus 132 G~G~S~~~~~~-~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~ 210 (462)
T PTZ00472 132 GVGFSYADKAD-YDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLA 210 (462)
T ss_pred CcCcccCCCCC-CCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEE
Confidence 24443321110 0000112367777777755443 4445689999999999998866664 11 1478999
Q ss_pred EeccccChh
Q 004816 600 SLYGVADLS 608 (729)
Q Consensus 600 ~~~~~~d~~ 608 (729)
+.+|+.|..
T Consensus 211 IGNg~~dp~ 219 (462)
T PTZ00472 211 VGNGLTDPY 219 (462)
T ss_pred EeccccChh
Confidence 999887653
No 290
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.38 E-value=0.04 Score=54.56 Aligned_cols=206 Identities=15% Similarity=0.143 Sum_probs=97.9
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
..+..+|.||.+.|+++.+.. ..|+.+++++.-.+.+. .+.+.+.+.++.-+|+++ ..+ .+ ..
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~--------~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~v-l~~-Er------~~ 86 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEP--------GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYV-LSE-ER------DQ 86 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTT--------TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEE-EEE-TT------TT
T ss_pred CccccEEcCCCCeEEEEECCC--------CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEE-EEE-cC------CC
Confidence 368899999999988887654 57999999754445553 344556788888777533 333 22 24
Q ss_pred EEEEEEecCCC-Cee--e---eEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEc--CCCeEEEeeccC
Q 004816 271 ELWVGYISENG-DVY--K---RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE--SNNEVLAIYSLD 341 (729)
Q Consensus 271 ~l~~~d~~~~g-~~~--~---~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~--~~g~~~~l~~~~ 341 (729)
+|++++++..+ ... . ..+......+ ..+..++|++.++ |++...+ .-..||.++. ............
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N--~G~EGla~D~~~~~L~v~kE~--~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGN--KGFEGLAYDPKTNRLFVAKER--KPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---S--S--EEEEEETTTTEEEEEEES--SSEEEEEEESTT-SS--EEEE-HH
T ss_pred cEEEEEEeccccccchhhceEEecccccCCC--cceEEEEEcCCCCEEEEEeCC--CChhhEEEccccCccceeeccccc
Confidence 58888885222 111 1 1111111111 4567899999877 6655443 4466887775 222222211100
Q ss_pred ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE--eeccCC-------cceEEeeeeCCEEEE
Q 004816 342 AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS--LLDIPF-------TDIDNITLGNDCLFV 412 (729)
Q Consensus 342 ~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~--~lt~~~-------~~v~~~~~~~~~~~~ 412 (729)
.. .........+.+.+.+ ..+.+|+.+..+ ..|..+|.++..+. .|..+. ..-..+..+.+.-+|
T Consensus 163 ~~-~~~~~~~d~S~l~~~p---~t~~lliLS~es--~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 163 LD-DDKLFVRDLSGLSYDP---RTGHLLILSDES--RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp HH--HT--SS---EEEEET---TTTEEEEEETTT--TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred cc-cccceeccccceEEcC---CCCeEEEEECCC--CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 00 0111112233445543 566777776433 35666776655333 333322 123445333344555
Q ss_pred EEeCCCCCceEEEE
Q 004816 413 EGASGVEPSSVAKV 426 (729)
Q Consensus 413 ~~~~~~~~~~ly~~ 426 (729)
+.+.+ ...|++
T Consensus 237 IvsEp---Nlfy~f 247 (248)
T PF06977_consen 237 IVSEP---NLFYRF 247 (248)
T ss_dssp EEETT---TEEEEE
T ss_pred EEcCC---ceEEEe
Confidence 55543 466665
No 291
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=97.38 E-value=0.028 Score=62.97 Aligned_cols=146 Identities=12% Similarity=0.082 Sum_probs=90.4
Q ss_pred ECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eEEeee
Q 004816 161 NYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQVLVS 238 (729)
Q Consensus 161 ~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~~lt~ 238 (729)
...++.+-++..+. ++.. .|+.. .....+.+++-+|+.+++..++. .|-+++...+. .+.+-.
T Consensus 72 ~s~~~tv~~y~fps--~~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD~---------~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPS--GEEDTILARF----TLPIRDLAVSGSGKMIAAGSDDT---------AVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred eeccceEEEeeCCC--CCccceeeee----eccceEEEEecCCcEEEeecCce---------eEEEEeccccchheeecc
Confidence 33455677777766 4443 33333 23457888999999999887753 47777776644 344444
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeE--EecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRV--CVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~--~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
..+......++|.|+.||..+ .+..|++++++ ++.+.... +.+..+..-......++|+|+|. +++..
T Consensus 137 h~apVl~l~~~p~~~fLAvss--------~dG~v~iw~~~-~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~ 207 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSS--------CDGKVQIWDLQ-DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP 207 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEe--------cCceEEEEEcc-cchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence 455677889999999999887 34559999998 67642211 11111100003346789999966 76665
Q ss_pred ecCCCceEEEEEEcCCCeE
Q 004816 316 DRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~ 334 (729)
.+ ..+-+++..+.+.
T Consensus 208 ~d----~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 208 VD----NTVKVYSRKGWEL 222 (933)
T ss_pred cC----CeEEEEccCCcee
Confidence 44 2355556666543
No 292
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.38 E-value=0.025 Score=67.13 Aligned_cols=193 Identities=10% Similarity=0.032 Sum_probs=103.8
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc---------eEEeeeCCCeeeeeeeCCC-CCeEEEEEe
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN---------IQVLVSGSDFYAFPRMDPR-GERMAWIEW 260 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~---------~~~lt~~~~~~~~~~~SPD-G~~la~~~~ 260 (729)
..+...+|+|||+.++....+ ..|.++++.+.. ...+ .+.......+|+|. +++|+..+
T Consensus 484 ~~V~~i~fs~dg~~latgg~D---------~~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~- 552 (793)
T PLN00181 484 NLVCAIGFDRDGEFFATAGVN---------KKIKIFECESIIKDGRDIHYPVVEL-ASRSKLSGICWNSYIKSQVASSN- 552 (793)
T ss_pred CcEEEEEECCCCCEEEEEeCC---------CEEEEEECCcccccccccccceEEe-cccCceeeEEeccCCCCEEEEEe-
Confidence 446778899999987665543 357777764310 1111 12234456789874 66665444
Q ss_pred cCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC-CCcEEEEEecCCCceEEEEEEcCCCeEEEeec
Q 004816 261 HHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS-KGELFFVTDRKNGFWNLHKWIESNNEVLAIYS 339 (729)
Q Consensus 261 ~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp-DG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~ 339 (729)
....|.++|+. +++. ...+.+.. ..+..+.|+| |+.++++... .+. +.++|+.+++......
T Consensus 553 -------~Dg~v~lWd~~-~~~~--~~~~~~H~----~~V~~l~~~p~~~~~L~Sgs~-Dg~--v~iWd~~~~~~~~~~~ 615 (793)
T PLN00181 553 -------FEGVVQVWDVA-RSQL--VTEMKEHE----KRVWSIDYSSADPTLLASGSD-DGS--VKLWSINQGVSIGTIK 615 (793)
T ss_pred -------CCCeEEEEECC-CCeE--EEEecCCC----CCEEEEEEcCCCCCEEEEEcC-CCE--EEEEECCCCcEEEEEe
Confidence 23458889988 5543 44455554 5677889997 6666555544 344 5556776665432222
Q ss_pred cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc--eEeeccCCcceEEe-eeeCCEEEEEEeC
Q 004816 340 LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS--LSLLDIPFTDIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 340 ~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~--~~~lt~~~~~v~~~-~~~~~~~~~~~~~ 416 (729)
....+. .+.|.+ +++.++++...+|...+ +|+..+. ...+......+..+ ..+ +..++.++.
T Consensus 616 ~~~~v~---------~v~~~~---~~g~~latgs~dg~I~i--wD~~~~~~~~~~~~~h~~~V~~v~f~~-~~~lvs~s~ 680 (793)
T PLN00181 616 TKANIC---------CVQFPS---ESGRSLAFGSADHKVYY--YDLRNPKLPLCTMIGHSKTVSYVRFVD-SSTLVSSST 680 (793)
T ss_pred cCCCeE---------EEEEeC---CCCCEEEEEeCCCeEEE--EECCCCCccceEecCCCCCEEEEEEeC-CCEEEEEEC
Confidence 111111 223321 33445556666675444 5665443 23344444456666 333 344444443
Q ss_pred CCCCceEEEEEcC
Q 004816 417 GVEPSSVAKVTLD 429 (729)
Q Consensus 417 ~~~~~~ly~~d~~ 429 (729)
. ..+.++|+.
T Consensus 681 D---~~ikiWd~~ 690 (793)
T PLN00181 681 D---NTLKLWDLS 690 (793)
T ss_pred C---CEEEEEeCC
Confidence 3 245555654
No 293
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.36 E-value=0.0038 Score=63.28 Aligned_cols=264 Identities=11% Similarity=0.039 Sum_probs=141.2
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccc--ccccCCceEEEECC-EEEEEECCCCc
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTT--AQEYGGGAFRIFGD-TVIFSNYKDQR 166 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~i~~~~~~~~~ 166 (729)
+..++|.| |+++.-=. ..|...||.-.. ++.... -|.+...+..++.+ .-+++.+.++-
T Consensus 99 V~~v~WtPeGRRLltgs----~SGEFtLWNg~~-------------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~ 161 (464)
T KOG0284|consen 99 VNVVRWTPEGRRLLTGS----QSGEFTLWNGTS-------------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGM 161 (464)
T ss_pred eeeEEEcCCCceeEeec----ccccEEEecCce-------------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCce
Confidence 45788998 77664422 456677775311 111111 12233333444322 23345555667
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eEEeeeCCCeeee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQVLVSGSDFYAF 245 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~~lt~~~~~~~~ 245 (729)
|-.|++.- ..++.+... ....+.+.+|||.....+-.+++ +.|-++|..-.+ +++|.........
T Consensus 162 iKyWqpnm--nnVk~~~ah---h~eaIRdlafSpnDskF~t~SdD---------g~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 162 IKYWQPNM--NNVKIIQAH---HAEAIRDLAFSPNDSKFLTCSDD---------GTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred EEecccch--hhhHHhhHh---hhhhhheeccCCCCceeEEecCC---------CeEEEEeccCCchhheeccCCCCcce
Confidence 77777653 333333322 12456889999966543433333 457777876544 4555433334567
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL 324 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l 324 (729)
..|.|.-..| +...++ .-|-++|.. +|+. +..+.... ..+..+.|+++|. |+-.+.+ ..+
T Consensus 228 vdWHP~kgLi-asgskD-------nlVKlWDpr-Sg~c--l~tlh~HK----ntVl~~~f~~n~N~Llt~skD----~~~ 288 (464)
T KOG0284|consen 228 VDWHPTKGLI-ASGSKD-------NLVKLWDPR-SGSC--LATLHGHK----NTVLAVKFNPNGNWLLTGSKD----QSC 288 (464)
T ss_pred eccCCcccee-EEccCC-------ceeEeecCC-Ccch--hhhhhhcc----ceEEEEEEcCCCCeeEEccCC----ceE
Confidence 8999975544 444232 247788877 6654 44555555 6677889999998 4433332 356
Q ss_pred EEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec-cCCcceEE
Q 004816 325 HKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD-IPFTDIDN 402 (729)
Q Consensus 325 ~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt-~~~~~v~~ 402 (729)
-++|..+-+ ....-....++....|.|.. ..|+.+...+|....|.+++. ..+-.+. ..+..|.+
T Consensus 289 kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~------------~~lftsgg~Dgsvvh~~v~~~-~p~~~i~~AHd~~iws 355 (464)
T KOG0284|consen 289 KVFDIRTMKELFTYRGHKKDVTSLTWHPLN------------ESLFTSGGSDGSVVHWVVGLE-EPLGEIPPAHDGEIWS 355 (464)
T ss_pred EEEehhHhHHHHHhhcchhhheeecccccc------------ccceeeccCCCceEEEecccc-ccccCCCcccccceee
Confidence 677876422 22222344466677888742 335555555666555555421 1111111 12345666
Q ss_pred e-eeeCCEEEEEEeCC
Q 004816 403 I-TLGNDCLFVEGASG 417 (729)
Q Consensus 403 ~-~~~~~~~~~~~~~~ 417 (729)
+ ..+=+.+++.++++
T Consensus 356 l~~hPlGhil~tgsnd 371 (464)
T KOG0284|consen 356 LAYHPLGHILATGSND 371 (464)
T ss_pred eeccccceeEeecCCC
Confidence 6 45556677665443
No 294
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.35 E-value=0.12 Score=55.33 Aligned_cols=205 Identities=14% Similarity=0.076 Sum_probs=119.2
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
.....+++|++++....+ ...+.++|.++.....-. -+. .-.+..++|||++++...... .+..+
T Consensus 77 ~~i~v~~~~~~vyv~~~~--------~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~-----~~~~v 142 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGD--------SNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGN-----GNNTV 142 (381)
T ss_pred cceeeCCCCCeEEEecCC--------CCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEeccc-----CCceE
Confidence 566789999986544332 256889997665443222 222 334578999999998776322 24568
Q ss_pred EEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccC--ccccCCccc
Q 004816 273 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD--AEFSRPLWV 350 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~--~~~~~~~w~ 350 (729)
.++|.. +++.... ...+. .....+.+|||+.+|+.+. +...|..+|.++....+ .... .....-
T Consensus 143 svid~~-t~~~~~~-~~vG~------~P~~~a~~p~g~~vyv~~~--~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~--- 208 (381)
T COG3391 143 SVIDAA-TNKVTAT-IPVGN------TPTGVAVDPDGNKVYVTNS--DDNTVSVIDTSGNSVVR-GSVGSLVGVGTG--- 208 (381)
T ss_pred EEEeCC-CCeEEEE-EecCC------CcceEEECCCCCeEEEEec--CCCeEEEEeCCCcceec-cccccccccCCC---
Confidence 888877 5554332 33332 2267889999995555553 45678888877665553 2100 001111
Q ss_pred ccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC--CcceEEe-eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 351 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP--FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 351 ~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~--~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
.....+.+ ++..+|..-..+....+..+|..++........ ......+ ..+++..+|..... ...++.+|
T Consensus 209 --P~~i~v~~---~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid 281 (381)
T COG3391 209 --PAGIAVDP---DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVID 281 (381)
T ss_pred --CceEEECC---CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEe
Confidence 11223332 777777776655556888899988887665322 2111222 33444444444333 45788888
Q ss_pred cCCCcc
Q 004816 428 LDDHKL 433 (729)
Q Consensus 428 ~~~~~~ 433 (729)
......
T Consensus 282 ~~~~~v 287 (381)
T COG3391 282 GATDRV 287 (381)
T ss_pred CCCCce
Confidence 776654
No 295
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.35 E-value=0.046 Score=56.13 Aligned_cols=244 Identities=13% Similarity=0.091 Sum_probs=127.6
Q ss_pred CCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 146 GGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 146 ~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
|+.++.+.+. ..+.+...+..+.++|... ++.-.+-.+ ......+..++|+-..++-.+.+ ..|+
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s--~q~l~~~~G---h~kki~~v~~~~~~~~v~~aSad---------~~i~ 286 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPS--NQILATLKG---HTKKITSVKFHKDLDTVITASAD---------EIIR 286 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecch--hhhhhhccC---cceEEEEEEeccchhheeecCCc---------ceEE
Confidence 4444444432 2333433444677777665 332222222 14567788899988865433322 3466
Q ss_pred EEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEec--CCCCCcccccc
Q 004816 225 AIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVA--GFDPTIVESPT 301 (729)
Q Consensus 225 ~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~--~~~~~~~~~~~ 301 (729)
++........ .+-......++....|.|++|...+. + ....-.|+. +|.. ..... ..+ ....
T Consensus 287 vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~-d-------~~w~Fsd~~-~g~~--lt~vs~~~s~----v~~t 351 (506)
T KOG0289|consen 287 VWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASN-D-------GTWAFSDIS-SGSQ--LTVVSDETSD----VEYT 351 (506)
T ss_pred eeccccccCccccccccccceeeeeccCCcEEEEecC-C-------ceEEEEEcc-CCcE--EEEEeecccc----ceeE
Confidence 6555433322 22333445667778899998887762 2 223334555 5543 22222 222 4567
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
..++.||| ++|.....++.-. ++|+..+. .+...+. -.-....+.|. ++++.+.+..+++...||
T Consensus 352 s~~fHpDg-Lifgtgt~d~~vk--iwdlks~~--~~a~Fpg------ht~~vk~i~Fs----ENGY~Lat~add~~V~lw 416 (506)
T KOG0289|consen 352 SAAFHPDG-LIFGTGTPDGVVK--IWDLKSQT--NVAKFPG------HTGPVKAISFS----ENGYWLATAADDGSVKLW 416 (506)
T ss_pred EeeEcCCc-eEEeccCCCceEE--EEEcCCcc--ccccCCC------CCCceeEEEec----cCceEEEEEecCCeEEEE
Confidence 78899999 5555443245444 45665543 2222111 11123455665 677777777777876666
Q ss_pred EEECCCCceEeeccC-CcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCcceeee
Q 004816 382 ILDDFGHSLSLLDIP-FTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAVD 437 (729)
Q Consensus 382 ~~d~~~g~~~~lt~~-~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~lt 437 (729)
-+. +....+.++.+ ...+..+ .+..+.++.+++ ..-.+|.+.-.+.+.+.+.
T Consensus 417 DLR-Kl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g---~~l~Vy~~~k~~k~W~~~~ 470 (506)
T KOG0289|consen 417 DLR-KLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG---SDLQVYICKKKTKSWTEIK 470 (506)
T ss_pred Eeh-hhcccceeeccccccceeEEEcCCCCeEEeec---ceeEEEEEecccccceeee
Confidence 432 12233333332 2356666 444555555553 3346888876666655443
No 296
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=97.33 E-value=0.02 Score=56.34 Aligned_cols=130 Identities=9% Similarity=0.020 Sum_probs=84.2
Q ss_pred cEEEEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-----hhhhHHHhhCCcEEEEecCCCC
Q 004816 458 PELIEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-----NLSIQYWTSRGWAFVDVNYGGS 532 (729)
Q Consensus 458 ~~~~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-----~~~~~~la~~G~~v~~~d~rGs 532 (729)
.++..+.+. . ..+++.++-..+ ++.|+++-.|.-.-.. ...| .+.++.+..+ |.|+-+|.+|.
T Consensus 22 ~~e~~V~T~-~-G~v~V~V~Gd~~--------~~kpaiiTyhDlglN~-~scFq~ff~~p~m~ei~~~-fcv~HV~~PGq 89 (326)
T KOG2931|consen 22 CQEHDVETA-H-GVVHVTVYGDPK--------GNKPAIITYHDLGLNH-KSCFQGFFNFPDMAEILEH-FCVYHVDAPGQ 89 (326)
T ss_pred ceeeeeccc-c-ccEEEEEecCCC--------CCCceEEEecccccch-HhHhHHhhcCHhHHHHHhh-eEEEecCCCcc
Confidence 456666665 3 557777775432 3568899999853221 1112 2345667777 99999999874
Q ss_pred CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecccc
Q 004816 533 TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVA 605 (729)
Q Consensus 533 ~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~ 605 (729)
-.-.. .....+..-.++|+.+.+-.+++... -+-|.-+|--+|+++-.++|. ||+++-+.|++++..
T Consensus 90 e~gAp----~~p~~y~yPsmd~LAd~l~~VL~~f~--lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~ 157 (326)
T KOG2931|consen 90 EDGAP----SFPEGYPYPSMDDLADMLPEVLDHFG--LKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDP 157 (326)
T ss_pred ccCCc----cCCCCCCCCCHHHHHHHHHHHHHhcC--cceEEEecccccHHHHHHHHhcChhheeEEEEEecCC
Confidence 32111 11222222336666666666655533 367888999999999999887 999999999998754
No 297
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=97.32 E-value=0.16 Score=58.21 Aligned_cols=193 Identities=15% Similarity=0.120 Sum_probs=106.1
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
.++|+++.. +....+... ..++..+.++++++.++.+.......+ .....+.....++.+..++.+.....
T Consensus 149 ~~l~~~d~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (620)
T COG1506 149 SDLYVVDIE---SKLIKLGLG----NLDVVSFATDGDGRLVASIRLDDDADP--WVTNLYVLIEGNGELESLTPGEGSIS 219 (620)
T ss_pred cceEEEccC---cccccccCC----CCceeeeeeCCCCceeEEeeeccccCC--ceEeeEEEecCCCceEEEcCCCceee
Confidence 378888875 223333333 355677778888887766655443111 12344444446788888888877788
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~ 323 (729)
.+.|.+||+.+++........-+....+++++.+ .+.... .+....+ . .......+.-++. ++|......+...
T Consensus 220 ~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~-~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~g~~~ 294 (620)
T COG1506 220 KLAFDADGKSIALLGTESDRGLAEGDFILLLDGE-LGEVDG-DLSSGDD-T--RGAWAVEGGLDGDGLLFIATDGGGSSP 294 (620)
T ss_pred eeeeCCCCCeeEEeccCCccCccccceEEEEecc-ccccce-eeccCCc-c--cCcHHhccccCCCcEEEEEecCCCceE
Confidence 8999999999999986665322234556776633 344322 0111100 0 1111122223444 7776665356777
Q ss_pred EEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE-CCeEEEEEEEC
Q 004816 324 LHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ-NGRSYLGILDD 385 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~-~g~~~ly~~d~ 385 (729)
++.++..++....+......+. .+. + +++.+++.... .....+|.++.
T Consensus 295 l~~~~~~~~~~~~~~~~~~~v~--~f~-------~-----~~~~~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 295 LFRVDDLGGGVEGLSGDDGGVP--GFD-------V-----DGRKLALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred EEEEeccCCceeeecCCCceEE--EEe-------e-----CCCEEEEEecCCCCccceEEEcC
Confidence 7777654544333332212211 111 1 45556555544 44678888876
No 298
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.32 E-value=0.0043 Score=59.43 Aligned_cols=204 Identities=19% Similarity=0.174 Sum_probs=110.7
Q ss_pred CCCEEEEEcCCCCCCccccchhhhHHHhhCC-----cEEEEecCCCCCCCchhHHHhh-cc------CCCccc----HHH
Q 004816 491 KPPLLVKSHGGPTSEARGILNLSIQYWTSRG-----WAFVDVNYGGSTGYGREFRERL-LG------RWGIVD----VND 554 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G-----~~v~~~d~rGs~g~g~~~~~~~-~~------~~~~~~----~~D 554 (729)
..| .+++||..+. ...+..++..+...+ -.++.+|--|+--......... ++ .-+... ..=
T Consensus 45 ~iP-TIfIhGsgG~--asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~w 121 (288)
T COG4814 45 AIP-TIFIHGSGGT--ASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKW 121 (288)
T ss_pred ccc-eEEEecCCCC--hhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHH
Confidence 345 5668997443 344555666666654 4567777766432111111110 00 001111 233
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-------CCCcceEEEEeccccChhHHhhhcchhhhhhh-hhh-
Q 004816 555 CCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-------FRDTFKAGASLYGVADLSMLRAETHKFESRYI-DNL- 625 (729)
Q Consensus 555 ~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-------~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~-~~~- 625 (729)
+..++.+|.++..+ .++-++||||||.....++. .| .++..|++.+.++......... . ..+. ..+
T Consensus 122 lk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~yg~dks~P-~lnK~V~l~gpfN~~~l~~de~-v-~~v~~~~~~ 196 (288)
T COG4814 122 LKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMIDYGDDKSLP-PLNKLVSLAGPFNVGNLVPDET-V-TDVLKDGPG 196 (288)
T ss_pred HHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHHhcCCCCCc-chhheEEecccccccccCCCcc-h-heeeccCcc
Confidence 56778888888665 68999999999998888774 24 4677777777666211111100 0 0000 000
Q ss_pred -cCCh-hhhhhcCcccccCCC--CCCEEEEEeCCC------CCCChHHHHHHHHHHHhCCCCEEEEEECC--CCcccCCc
Q 004816 626 -VGSE-KDYYEKSPINFVDKF--SCPIILFQGLED------KVVPPDQARKIYKALKENGLPVALVEYEG--EQHGFRKA 693 (729)
Q Consensus 626 -~~~~-~~~~~~sp~~~~~~i--~~PvL~i~G~~D------~~vp~~~~~~~~~~l~~~g~~~~~~~~~~--~gH~~~~~ 693 (729)
...+ ..|... ....+ ..-+|+|.|+-| -.||...+...+..+..+++...-.+|+| +.|.-. +
T Consensus 197 ~~~t~y~~y~~~----n~k~v~~~~evl~IaGDl~dg~~tDG~Vp~assls~~~lf~~~~ksy~e~~~~Gk~a~Hs~l-h 271 (288)
T COG4814 197 LIKTPYYDYIAK----NYKKVSPNTEVLLIAGDLDDGKQTDGAVPWASSLSIYHLFKKNGKSYIESLYKGKDARHSKL-H 271 (288)
T ss_pred ccCcHHHHHHHh----cceeCCCCcEEEEEecccccCCcCCCceechHhHHHHHHhccCcceeEEEeeeCCcchhhcc-C
Confidence 0000 111111 01111 356899999765 46889999999999998887666556665 467522 2
Q ss_pred ccHHHHHHHHHHHHH
Q 004816 694 ENIKFTLEQQMVFFA 708 (729)
Q Consensus 694 ~~~~~~~~~~~~fl~ 708 (729)
++ ....+.+..||-
T Consensus 272 en-~~v~~yv~~FLw 285 (288)
T COG4814 272 EN-PTVAKYVKNFLW 285 (288)
T ss_pred CC-hhHHHHHHHHhh
Confidence 22 344555666664
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.31 E-value=0.045 Score=54.32 Aligned_cols=195 Identities=15% Similarity=0.089 Sum_probs=98.3
Q ss_pred cCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCe-eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEe
Q 004816 199 DPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 277 (729)
Q Consensus 199 SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~ 277 (729)
.++++.|+.. .. ...|+.+|..+|+..--...... ...| ..++..|++.. ....|+.+|.
T Consensus 33 ~~~~~~v~~~-~~--------~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~--------~~~~l~~~d~ 93 (238)
T PF13360_consen 33 VPDGGRVYVA-SG--------DGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGT--------SDGSLYALDA 93 (238)
T ss_dssp EEETTEEEEE-ET--------TSEEEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEE--------TTSEEEEEET
T ss_pred EEeCCEEEEE-cC--------CCEEEEEECCCCCEEEEeecccccccee--eeccccccccc--------ceeeeEeccc
Confidence 3466765544 22 26899999988876432222222 2223 33566676665 1236999998
Q ss_pred cCCCCeeee-EEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCc-cccCCcc--ccc
Q 004816 278 SENGDVYKR-VCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA-EFSRPLW--VFG 352 (729)
Q Consensus 278 ~~~g~~~~~-~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~-~~~~~~w--~~~ 352 (729)
. +|+..+. ....... . ..........++. +++... ...|+.+|+++|+..--..... ....+.. ...
T Consensus 94 ~-tG~~~W~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~ 165 (238)
T PF13360_consen 94 K-TGKVLWSIYLTSSPP-A--GVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDI 165 (238)
T ss_dssp T-TSCEEEEEEE-SSCT-C--STB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTE
T ss_pred C-Ccceeeeeccccccc-c--ccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEeecCCCCCCcceeeeccc
Confidence 8 8887655 2322211 0 1112223333455 444432 2468999999997643221111 1000000 000
Q ss_pred CcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEE-eeeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 353 INSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 353 ~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
.....+ .++.+|+.. .++. ++.+|..+++.. -......... ...+++.+++.. . ...++.+|+++|
T Consensus 166 ~~~~~~-----~~~~v~~~~-~~g~--~~~~d~~tg~~~-w~~~~~~~~~~~~~~~~~l~~~~-~---~~~l~~~d~~tG 232 (238)
T PF13360_consen 166 NGSPVI-----SDGRVYVSS-GDGR--VVAVDLATGEKL-WSKPISGIYSLPSVDGGTLYVTS-S---DGRLYALDLKTG 232 (238)
T ss_dssp EEEEEC-----CTTEEEEEC-CTSS--EEEEETTTTEEE-EEECSS-ECECEECCCTEEEEEE-T---TTEEEEEETTTT
T ss_pred ccceEE-----ECCEEEEEc-CCCe--EEEEECCCCCEE-EEecCCCccCCceeeCCEEEEEe-C---CCEEEEEECCCC
Confidence 011111 334555443 3443 666699988844 2333333444 245555555444 3 368999999999
Q ss_pred cc
Q 004816 432 KL 433 (729)
Q Consensus 432 ~~ 433 (729)
+.
T Consensus 233 ~~ 234 (238)
T PF13360_consen 233 KV 234 (238)
T ss_dssp EE
T ss_pred CE
Confidence 73
No 300
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=97.31 E-value=0.0013 Score=64.54 Aligned_cols=101 Identities=17% Similarity=0.223 Sum_probs=59.7
Q ss_pred CEEEEEcCCCCCCccccchhhhHHH--------hhCCcEEEEecCCCCCC--CchhHHHhhccCCCcccHHHHHHHHHHH
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYW--------TSRGWAFVDVNYGGSTG--YGREFRERLLGRWGIVDVNDCCSCATFL 562 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~l--------a~~G~~v~~~d~rGs~g--~g~~~~~~~~~~~~~~~~~D~~~~~~~l 562 (729)
..|||+||..++.. .+..+...+ ....+.++.+||..... +|.... ...+-+..+++++
T Consensus 5 ~pVlFIhG~~Gs~~--q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~g~~l~---------~q~~~~~~~i~~i 73 (225)
T PF07819_consen 5 IPVLFIHGNAGSYK--QVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFHGRTLQ---------RQAEFLAEAIKYI 73 (225)
T ss_pred CEEEEECcCCCCHh--HHHHHHHHHhhhhhhccCccceeEEEeccCccccccccccHH---------HHHHHHHHHHHHH
Confidence 45899999644321 222222222 22358899999864221 121111 1123355566666
Q ss_pred HhCC---CCCCCcEEEEEcChHHHHHHHHHhC----CCcceEEEEeccc
Q 004816 563 VGSG---KADEKRLCITGGSAGGYTTLAALAF----RDTFKAGASLYGV 604 (729)
Q Consensus 563 ~~~~---~~d~~ri~i~G~S~GG~~a~~~~~~----~~~~~a~v~~~~~ 604 (729)
.+.. ...+++|.|+||||||.++-.++.. ++.++.+|.++..
T Consensus 74 ~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tP 122 (225)
T PF07819_consen 74 LELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTP 122 (225)
T ss_pred HHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCC
Confidence 5543 3467899999999999999888762 3468888876543
No 301
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.31 E-value=0.004 Score=64.45 Aligned_cols=150 Identities=7% Similarity=0.006 Sum_probs=95.3
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|.+....|+.+...++.|++|++-+..+-.+..... ...+.+.+||.+|..++-+.-+ ..|-++|.+
T Consensus 222 ~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH----~k~Vrd~~~s~~g~~fLS~sfD---------~~lKlwDtE 288 (503)
T KOG0282|consen 222 WFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGH----RKPVRDASFNNCGTSFLSASFD---------RFLKLWDTE 288 (503)
T ss_pred hccceeeEEEecCCCceEEEEEEecCcceehhhhcc----hhhhhhhhccccCCeeeeeecc---------eeeeeeccc
Confidence 444455788888888999999986410222222222 3456889999999987766554 357788999
Q ss_pred CCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 230 GQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
+|+..+-........-..+.||+..++++... +..|..+|+. +|++.+ -....- +.+..+.|-++|
T Consensus 289 TG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~s-------d~ki~~wDiR-s~kvvq--eYd~hL----g~i~~i~F~~~g 354 (503)
T KOG0282|consen 289 TGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGS-------DKKIRQWDIR-SGKVVQ--EYDRHL----GAILDITFVDEG 354 (503)
T ss_pred cceEEEEEecCCCceeeecCCCCCcEEEEecC-------CCcEEEEecc-chHHHH--HHHhhh----hheeeeEEccCC
Confidence 99876543333334446789999888777743 3458889988 676421 111111 345567888999
Q ss_pred c-EEEEEecCCCceEEEEEE
Q 004816 310 E-LFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 310 ~-l~~~~~~~~g~~~l~~~d 328 (729)
+ ++-.++ .+...||-+.
T Consensus 355 ~rFissSD--dks~riWe~~ 372 (503)
T KOG0282|consen 355 RRFISSSD--DKSVRIWENR 372 (503)
T ss_pred ceEeeecc--CccEEEEEcC
Confidence 8 444444 3555666443
No 302
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.21 E-value=0.054 Score=53.39 Aligned_cols=207 Identities=13% Similarity=0.099 Sum_probs=107.5
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
.+++.+|+||.+.|+.+.+.. ..|.-++.+|.-.+.+.- +-.......|.-+|++++. ++. ..
T Consensus 87 nvS~LTynp~~rtLFav~n~p--------~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~---dER-----~~ 150 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTNKP--------AAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV---DER-----DR 150 (316)
T ss_pred cccceeeCCCcceEEEecCCC--------ceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE---ehh-----cc
Confidence 368899999999977665543 578888888655565532 2222334577777775432 222 34
Q ss_pred EEEEEEecCCCCeee-----eEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCe-EEEeeccCcc
Q 004816 271 ELWVGYISENGDVYK-----RVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAE 343 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~-----~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~ 343 (729)
+|+++.++.++.... +.+......+ .+..+.+|+|+.+ +++...+ .-..||.++-.... ...+.... .
T Consensus 151 ~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N--~GfEGlA~d~~~~~l~~aKEr--~P~~I~~~~~~~~~l~~~~~~~~-~ 225 (316)
T COG3204 151 ALYLFTVDADTTVISAKVQKIPLGTTNKKN--KGFEGLAWDPVDHRLFVAKER--NPIGIFEVTQSPSSLSVHASLDP-T 225 (316)
T ss_pred eEEEEEEcCCccEEeccceEEeccccCCCC--cCceeeecCCCCceEEEEEcc--CCcEEEEEecCCcccccccccCc-c
Confidence 577777764333211 1111111101 5677899999988 6666554 55677777632211 11111110 1
Q ss_pred ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee--ccCCc-------ceEEeeeeCCEEEEEE
Q 004816 344 FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL--DIPFT-------DIDNITLGNDCLFVEG 414 (729)
Q Consensus 344 ~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l--t~~~~-------~v~~~~~~~~~~~~~~ 414 (729)
....-+....+.+.|-+ ..+.+++.+.++. .|..++.++.-+..+ +.+.. ....+..|+...+|+.
T Consensus 226 ~~~~~f~~DvSgl~~~~---~~~~LLVLS~ESr--~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 226 ADRDLFVLDVSGLEFNA---ITNSLLVLSDESR--RLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cccceEeeccccceecC---CCCcEEEEecCCc--eEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 11122333444555532 3556666665433 455666665543332 33322 2334445555555666
Q ss_pred eCCCCCceEEEEE
Q 004816 415 ASGVEPSSVAKVT 427 (729)
Q Consensus 415 ~~~~~~~~ly~~d 427 (729)
+.++ -.|++.
T Consensus 301 SEPn---lfy~F~ 310 (316)
T COG3204 301 SEPN---LFYRFT 310 (316)
T ss_pred ecCC---cceecc
Confidence 5443 455543
No 303
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.19 E-value=0.016 Score=58.20 Aligned_cols=151 Identities=9% Similarity=-0.037 Sum_probs=92.4
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCC--CceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGE--PLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~--~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
...++++..- ..+||++|+.. .+.|..-+.. .+......+.++.+.+++|-.... ..+|+++|+.
T Consensus 95 mNr~RLvV~L--ee~IyIydI~~----MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-------~GdV~l~d~~ 161 (391)
T KOG2110|consen 95 MNRKRLVVCL--EESIYIYDIKD----MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-------SGDVVLFDTI 161 (391)
T ss_pred EccceEEEEE--cccEEEEeccc----ceeehhhhccCCCccceEeeccCCCCceEEecCCCC-------CceEEEEEcc
Confidence 3455665553 33499999975 3444322111 123445556666777888875443 3679999987
Q ss_pred CCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC
Q 004816 230 GQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK 308 (729)
Q Consensus 230 ~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD 308 (729)
+-+.. .+....+.....+|||||..||-.+ + .++-|.|+.+. +|+. ..-+...-. ...+..++|+||
T Consensus 162 nl~~v~~I~aH~~~lAalafs~~G~llATAS-e------KGTVIRVf~v~-~G~k--l~eFRRG~~--~~~IySL~Fs~d 229 (391)
T KOG2110|consen 162 NLQPVNTINAHKGPLAALAFSPDGTLLATAS-E------KGTVIRVFSVP-EGQK--LYEFRRGTY--PVSIYSLSFSPD 229 (391)
T ss_pred cceeeeEEEecCCceeEEEECCCCCEEEEec-c------CceEEEEEEcC-CccE--eeeeeCCce--eeEEEEEEECCC
Confidence 74443 3344556677789999999999666 2 24557888887 6653 222221110 045567899999
Q ss_pred Cc-EEEEEecCCCceEEEEEEc
Q 004816 309 GE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 309 G~-l~~~~~~~~g~~~l~~~d~ 329 (729)
++ |...++ .+.-+|++++-
T Consensus 230 s~~L~~sS~--TeTVHiFKL~~ 249 (391)
T KOG2110|consen 230 SQFLAASSN--TETVHIFKLEK 249 (391)
T ss_pred CCeEEEecC--CCeEEEEEecc
Confidence 99 554444 46777887764
No 304
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.18 E-value=0.14 Score=50.82 Aligned_cols=146 Identities=11% Similarity=0.095 Sum_probs=82.1
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCC--CCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC-CCc
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG--EPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN-GQN 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~--~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~-~g~ 232 (729)
.++.++.++.-|.+||.-+ |+.+.--...+ .+-...-...|||||.+|++--. ..|-++|+. .|.
T Consensus 124 ~l~a~ssr~~PIh~wdaft--G~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk----------rcirvFdt~RpGr 191 (406)
T KOG2919|consen 124 NLFAVSSRDQPIHLWDAFT--GKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK----------RCIRVFDTSRPGR 191 (406)
T ss_pred ceeeeccccCceeeeeccc--cccccchhhhhhHHhhhhheeEEecCCCCeEeeccc----------ceEEEeeccCCCC
Confidence 3444555566788888877 55432111100 00011145679999999765422 446677763 232
Q ss_pred -eE---EeeeC----CCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 233 -IQ---VLVSG----SDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 233 -~~---~lt~~----~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
.. .++.+ .+..+-.++|| |.+.+++-+... .+-++.-. ++. +..++-+.. .++..+
T Consensus 192 ~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--------~~giy~~~-~~~--pl~llggh~----gGvThL 256 (406)
T KOG2919|consen 192 DCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--------RVGIYNDD-GRR--PLQLLGGHG----GGVTHL 256 (406)
T ss_pred CCcchhhhhcccccccceeeeeeccCCCCcceeeecccc--------eeeeEecC-CCC--ceeeecccC----CCeeeE
Confidence 11 22222 24556678999 666777766332 23344333 333 355666666 889999
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEEcC
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d~~ 330 (729)
+|-+||.-+|...+ ....|..+|+.
T Consensus 257 ~~~edGn~lfsGaR--k~dkIl~WDiR 281 (406)
T KOG2919|consen 257 QWCEDGNKLFSGAR--KDDKILCWDIR 281 (406)
T ss_pred EeccCcCeeccccc--CCCeEEEEeeh
Confidence 99999995555544 23456666664
No 305
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.16 E-value=0.0042 Score=61.32 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=83.6
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCc--EEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGW--AFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~--~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
....++|++||.-.. ........+|.....|+ .++.+..+..+. -..|..... -......++...++.|.+.
T Consensus 16 ~~~~vlvfVHGyn~~-f~~a~~r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~d~~--~a~~s~~~l~~~L~~L~~~-- 89 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNS-FEDALRRAAQLAHDLGFPGVVILFSWPSDGS-LLGYFYDRE--SARFSGPALARFLRDLARA-- 89 (233)
T ss_pred CCCeEEEEEeCCCCC-HHHHHHHHHHHHHHhCCCceEEEEEcCCCCC-hhhhhhhhh--hHHHHHHHHHHHHHHHHhc--
Confidence 345799999997322 22223334454444444 688888875433 222221111 1112355666677777665
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh----C-C-----CcceEEEEeccccChhHHhhhcchhhhhhhhhhcCChhhhhhcCc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA----F-R-----DTFKAGASLYGVADLSMLRAETHKFESRYIDNLVGSEKDYYEKSP 637 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~----~-~-----~~~~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp 637 (729)
....+|.|++||||+.+.+.++. . . .+|..+++.+|-.+...+.....
T Consensus 90 ~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~f~~~~~---------------------- 147 (233)
T PF05990_consen 90 PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDVFRSQLP---------------------- 147 (233)
T ss_pred cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHHHHHHHH----------------------
Confidence 23579999999999999988864 1 1 26778888888777654322110
Q ss_pred ccccCCCCCCEEEEEeCCCCCC
Q 004816 638 INFVDKFSCPIILFQGLEDKVV 659 (729)
Q Consensus 638 ~~~~~~i~~PvL~i~G~~D~~v 659 (729)
.+.+...++.+++..+|...
T Consensus 148 --~~~~~~~~itvy~s~~D~AL 167 (233)
T PF05990_consen 148 --DLGSSARRITVYYSRNDRAL 167 (233)
T ss_pred --HHhhcCCCEEEEEcCCchHH
Confidence 12233467888888888654
No 306
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.015 Score=62.28 Aligned_cols=196 Identities=9% Similarity=0.038 Sum_probs=112.9
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
+-..||..+ ++++... ..+|+++..++++..|... .+.++...|++||+.||....+ ..|
T Consensus 181 nlldWss~n--~laValg---------~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~--------g~v 241 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVALG---------QSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSD--------GTV 241 (484)
T ss_pred hHhhcccCC--eEEEEec---------ceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecC--------CeE
Confidence 335699555 3444432 4699999999999988765 6677889999999999976521 223
Q ss_pred EEEEecC------------------------------CCCeeeeE---------EecCCCCCccccccCceeCCCCcEEE
Q 004816 273 WVGYISE------------------------------NGDVYKRV---------CVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 273 ~~~d~~~------------------------------~g~~~~~~---------~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
.++|... ++.+.... .+.++. ..+....|++|++.+.
T Consensus 242 ~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~----qeVCgLkws~d~~~lA 317 (484)
T KOG0305|consen 242 QIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR----QEVCGLKWSPDGNQLA 317 (484)
T ss_pred EEEehhhccccccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc----ceeeeeEECCCCCeec
Confidence 3333321 00000000 011122 3455678999987322
Q ss_pred EEecCCCceEEEEEEcCCC-eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe
Q 004816 314 VTDRKNGFWNLHKWIESNN-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
... ....++++|..+. ....++...+.+-...|.|- ...|+.+........|...|..+|+...
T Consensus 318 SGg---nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~------------q~~lLAsGGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 318 SGG---NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW------------QSGLLATGGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred cCC---CccceEeccCCCccccEEEeccceeeeEeeeCCC------------ccCceEEcCCCcccEEEEEEcCCCcEec
Confidence 221 2345666676332 33445556666666778762 2235555544444566666777776443
Q ss_pred eccCCcceEEe--eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 393 LDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 393 lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
--.....|..+ +...+.++...+...+.-.||.+.
T Consensus 383 ~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 383 SVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred ccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 33334456666 455667877777666655677664
No 307
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.15 E-value=0.0028 Score=62.42 Aligned_cols=115 Identities=10% Similarity=0.155 Sum_probs=74.9
Q ss_pred ceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEE
Q 004816 196 GIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVG 275 (729)
Q Consensus 196 ~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~ 275 (729)
.+|||+|++|+-... .+|.+-|..+-+..+|..--+......|+.|.-+|.-....++ .+.+.
T Consensus 14 c~fSp~g~yiAs~~~----------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~-------~vqvw 76 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR----------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDP-------KVQVW 76 (447)
T ss_pred eeECCCCCeeeeeee----------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccc-------eEEEE
Confidence 469999999876644 4577778777666665443445566789999998877764433 37777
Q ss_pred EecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEe
Q 004816 276 YISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 276 d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 337 (729)
++. ..+. ...+.... .++...+|||||+ |+-.+.- ..+|-++.+.+.+...|
T Consensus 77 sl~-Qpew--~ckIdeg~----agls~~~WSPdgrhiL~tseF---~lriTVWSL~t~~~~~~ 129 (447)
T KOG4497|consen 77 SLV-QPEW--YCKIDEGQ----AGLSSISWSPDGRHILLTSEF---DLRITVWSLNTQKGYLL 129 (447)
T ss_pred Eee-ccee--EEEeccCC----CcceeeeECCCcceEeeeecc---eeEEEEEEeccceeEEe
Confidence 876 3432 22233332 5677889999998 6665543 35566666666554444
No 308
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.13 E-value=0.17 Score=48.97 Aligned_cols=161 Identities=11% Similarity=-0.019 Sum_probs=95.4
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
+.....+-+.+.++--+.+ +.+-++|.++|+......-........||++|..++++....-+ ....|
T Consensus 55 vW~~Did~~s~~liTGSAD---------~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg---~~~~v 122 (327)
T KOG0643|consen 55 VWCCDIDWDSKHLITGSAD---------QTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG---YTCFV 122 (327)
T ss_pred EEEEEecCCcceeeecccc---------ceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC---cceEE
Confidence 3434444455655443332 34667799988876665555556678899999998888744434 34568
Q ss_pred EEEEecCCC-C---eeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCc
Q 004816 273 WVGYISENG-D---VYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPL 348 (729)
Q Consensus 273 ~~~d~~~~g-~---~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~ 348 (729)
.++|+..+. . -.+...+...+ ..+....|+|-|+.++..+. .| .|-++|+.+|+...-... ..
T Consensus 123 ~~fdi~~~~~~~~s~ep~~kI~t~~----skit~a~Wg~l~~~ii~Ghe-~G--~is~~da~~g~~~v~s~~--~h---- 189 (327)
T KOG0643|consen 123 SVFDIRDDSSDIDSEEPYLKIPTPD----SKITSALWGPLGETIIAGHE-DG--SISIYDARTGKELVDSDE--EH---- 189 (327)
T ss_pred EEEEccCChhhhcccCceEEecCCc----cceeeeeecccCCEEEEecC-CC--cEEEEEcccCceeeechh--hh----
Confidence 888876211 0 11122333333 45567889999994445544 34 466678888754332211 11
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 349 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 349 w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
...++++.+. .++..++++..+....|+-+
T Consensus 190 -~~~Ind~q~s----~d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 190 -SSKINDLQFS----RDRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred -cccccccccc----CCcceEEecccCccceeeec
Confidence 1134456665 56677788888888877743
No 309
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=97.12 E-value=0.012 Score=64.37 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=81.1
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh---hhHHHhhCCcEEEEecCCCCCCCc---hhHH--Hh
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL---SIQYWTSRGWAFVDVNYGGSTGYG---REFR--ER 542 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~---~~~~la~~G~~v~~~d~rGs~g~g---~~~~--~~ 542 (729)
.|...++.|.+ ++ ++ ++.+-||... ....+.. ....-+.+||+++.-|--..+..+ ..|. ..
T Consensus 16 ~i~fev~LP~~--WN----gR---~~~~GgGG~~-G~i~~~~~~~~~~~~~~~G~A~~~TD~Gh~~~~~~~~~~~~~n~~ 85 (474)
T PF07519_consen 16 NIRFEVWLPDN--WN----GR---FLQVGGGGFA-GGINYADGKASMATALARGYATASTDSGHQGSAGSDDASFGNNPE 85 (474)
T ss_pred eEEEEEECChh--hc----cC---eEEECCCeee-CcccccccccccchhhhcCeEEEEecCCCCCCcccccccccCCHH
Confidence 67778888975 42 22 4444333221 1111111 134456889999999953221111 1111 11
Q ss_pred hccCCCcccHHHHHHHHHHHHhC-CCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh
Q 004816 543 LLGRWGIVDVNDCCSCATFLVGS-GKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS 608 (729)
Q Consensus 543 ~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~ 608 (729)
...+|+...+.+...+.+.|++. ....+++--..|.|-||-.++.++. +|+.|.++++.+|..++.
T Consensus 86 ~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~ 153 (474)
T PF07519_consen 86 ALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWT 153 (474)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHH
Confidence 23345555577777777888776 3346788999999999999999998 999999999998866543
No 310
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.12 E-value=0.12 Score=56.20 Aligned_cols=168 Identities=13% Similarity=0.148 Sum_probs=96.6
Q ss_pred eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 237 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 237 t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
+.+.......+.||||++|++....+ ..||....+ +.+. ++...... .-........++-|+. +++.+
T Consensus 379 ~k~~~nIs~~aiSPdg~~Ia~st~~~-------~~iy~L~~~--~~vk-~~~v~~~~-~~~~~a~~i~ftid~~k~~~~s 447 (691)
T KOG2048|consen 379 TKEKENISCAAISPDGNLIAISTVSR-------TKIYRLQPD--PNVK-VINVDDVP-LALLDASAISFTIDKNKLFLVS 447 (691)
T ss_pred cCCccceeeeccCCCCCEEEEeeccc-------eEEEEeccC--ccee-EEEeccch-hhhccceeeEEEecCceEEEEe
Confidence 45566667778999999999887322 335555443 3332 22222211 0003445677888988 55555
Q ss_pred ecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec-
Q 004816 316 DRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD- 394 (729)
Q Consensus 316 ~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt- 394 (729)
. ....|..+++++...+.+...... .-.+..+.+..++ +|++|...+ ....|+.+++++++.+.|.
T Consensus 448 ~---~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~Ss---dG~yiaa~~---t~g~I~v~nl~~~~~~~l~~ 514 (691)
T KOG2048|consen 448 K---NIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSS---DGNYIAAIS---TRGQIFVYNLETLESHLLKV 514 (691)
T ss_pred c---ccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcC---CCCEEEEEe---ccceEEEEEcccceeecchh
Confidence 2 335566667766655555422211 1123344455554 788777665 4557888899999888776
Q ss_pred cCCcceEEe--e-eeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 395 IPFTDIDNI--T-LGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 395 ~~~~~v~~~--~-~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.....+... . ..-+++++..++ .++|.+|+...+
T Consensus 515 rln~~vTa~~~~~~~~~~lvvats~----nQv~efdi~~~~ 551 (691)
T KOG2048|consen 515 RLNIDVTAAAFSPFVRNRLVVATSN----NQVFEFDIEARN 551 (691)
T ss_pred ccCcceeeeeccccccCcEEEEecC----CeEEEEecchhh
Confidence 334455554 3 334555555543 378999884443
No 311
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.10 E-value=0.34 Score=47.74 Aligned_cols=218 Identities=9% Similarity=0.012 Sum_probs=118.5
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
+..+++...+.+|+.||..+| ...++.... ...++...-+.-|-+++.+..++ .++-++|...++..
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG-~~~rk~k~h----~~~vNs~~p~rrg~~lv~SgsdD--------~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETG-KRIRKHKGH----TSFVNSLDPSRRGPQLVCSGSDD--------GTLKLWDIRKKEAI 168 (338)
T ss_pred CCEEEEecCCceEEEEecccc-eeeehhccc----cceeeecCccccCCeEEEecCCC--------ceEEEEeecccchh
Confidence 356777777889999999983 334444433 23334444455677777776655 46788888776655
Q ss_pred EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEE
Q 004816 235 VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFF 313 (729)
Q Consensus 235 ~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~ 313 (729)
++...........|.-++..+.-... +.+|-++|+. .+.. .-.+.+.. ..+..+.-|++|. +.-
T Consensus 169 ~t~~~kyqltAv~f~d~s~qv~sggI--------dn~ikvWd~r-~~d~--~~~lsGh~----DtIt~lsls~~gs~lls 233 (338)
T KOG0265|consen 169 KTFENKYQLTAVGFKDTSDQVISGGI--------DNDIKVWDLR-KNDG--LYTLSGHA----DTITGLSLSRYGSFLLS 233 (338)
T ss_pred hccccceeEEEEEecccccceeeccc--------cCceeeeccc-cCcc--eEEeeccc----CceeeEEeccCCCcccc
Confidence 55545555667889988888754332 2346777775 3332 33555654 4567788899997 543
Q ss_pred EEecCCCceEEEEEEcC-CCeE-EEeecc-Ccc----ccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 314 VTDRKNGFWNLHKWIES-NNEV-LAIYSL-DAE----FSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~-~g~~-~~l~~~-~~~----~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
.+.+ ...++|-+.+- .++. ..+... ... .-.-.|++ ++..+-+-+ ....+|+.|..
T Consensus 234 nsMd--~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp------------~~~~i~ags---~dr~vyvwd~~ 296 (338)
T KOG0265|consen 234 NSMD--NTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP------------NGTKITAGS---ADRFVYVWDTT 296 (338)
T ss_pred cccc--ceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC------------CCCcccccc---ccceEEEeecc
Confidence 3333 22333322221 1211 222211 111 11234555 333332222 22457777766
Q ss_pred CCce-EeeccCCcceEEe-eeeCCEEEEEEeCC
Q 004816 387 GHSL-SLLDIPFTDIDNI-TLGNDCLFVEGASG 417 (729)
Q Consensus 387 ~g~~-~~lt~~~~~v~~~-~~~~~~~~~~~~~~ 417 (729)
+... -.|......|..+ ..+..-++...+++
T Consensus 297 ~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sd 329 (338)
T KOG0265|consen 297 SRRILYKLPGHYGSVNEVDFHPTEPIILSCSSD 329 (338)
T ss_pred cccEEEEcCCcceeEEEeeecCCCcEEEEeccC
Confidence 5333 3445555666665 45555566655544
No 312
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.10 E-value=0.016 Score=55.14 Aligned_cols=145 Identities=10% Similarity=0.030 Sum_probs=89.9
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
.++-++++..++.+-+||..++ .+.+.|-.. ..+...-+|+||+.|. +... +.|-.+|.++=..
T Consensus 154 eD~~iLSSadd~tVRLWD~rTg-t~v~sL~~~-----s~VtSlEvs~dG~ilT-ia~g---------ssV~Fwdaksf~~ 217 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTG-TEVQSLEFN-----SPVTSLEVSQDGRILT-IAYG---------SSVKFWDAKSFGL 217 (334)
T ss_pred cCceEEeeccCCceEEEEeccC-cEEEEEecC-----CCCcceeeccCCCEEE-EecC---------ceeEEeccccccc
Confidence 4444455566778999999883 333444322 3456778999999643 3321 4566677765322
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEe-cCCCCCccccccCceeCCCCcEE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~-~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
-.-..-+....+...+|+-. ++... . +...+|.+|.. +|+- +... .+.. ..+..++|||||.+|
T Consensus 218 lKs~k~P~nV~SASL~P~k~-~fVaG-g------ed~~~~kfDy~-TgeE--i~~~nkgh~----gpVhcVrFSPdGE~y 282 (334)
T KOG0278|consen 218 LKSYKMPCNVESASLHPKKE-FFVAG-G------EDFKVYKFDYN-TGEE--IGSYNKGHF----GPVHCVRFSPDGELY 282 (334)
T ss_pred eeeccCccccccccccCCCc-eEEec-C------cceEEEEEecc-CCce--eeecccCCC----CceEEEEECCCCcee
Confidence 11122334456678999863 44333 2 23558999998 6653 3343 4444 566778999999877
Q ss_pred EEEecCCCceEEEEEEcC
Q 004816 313 FVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~ 330 (729)
..... .|.-+||...+.
T Consensus 283 AsGSE-DGTirlWQt~~~ 299 (334)
T KOG0278|consen 283 ASGSE-DGTIRLWQTTPG 299 (334)
T ss_pred eccCC-CceEEEEEecCC
Confidence 66655 788899987653
No 313
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.09 E-value=0.015 Score=64.25 Aligned_cols=146 Identities=10% Similarity=0.096 Sum_probs=85.5
Q ss_pred eEEEECC-EEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 149 ~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
..+.++- +++.+...+|.|-.|+..+ +... .+.-+ .....+..+....-++...+ ...|.++
T Consensus 498 gla~D~~n~~~vsa~~~Gilkfw~f~~--k~l~~~l~l~-----~~~~~iv~hr~s~l~a~~~d---------df~I~vv 561 (910)
T KOG1539|consen 498 GLAVDGTNRLLVSAGADGILKFWDFKK--KVLKKSLRLG-----SSITGIVYHRVSDLLAIALD---------DFSIRVV 561 (910)
T ss_pred EEEecCCCceEEEccCcceEEEEecCC--cceeeeeccC-----CCcceeeeeehhhhhhhhcC---------ceeEEEE
Confidence 3444433 5677777788888898875 3311 11111 00111222222222222222 2568899
Q ss_pred EcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 227 ALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 227 dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
|..+.++.+ +....+..+..+||||||+|+-.+.| ..|.++|+. ++.......+. .....+.+
T Consensus 562 D~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD--------~tIr~wDlp-t~~lID~~~vd-------~~~~sls~ 625 (910)
T KOG1539|consen 562 DVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMD--------STIRTWDLP-TGTLIDGLLVD-------SPCTSLSF 625 (910)
T ss_pred EchhhhhhHHhhccccceeeeEeCCCCcEEEEeecC--------CcEEEEecc-CcceeeeEecC-------CcceeeEE
Confidence 988766544 33345678889999999999987743 459999998 77763222222 23357899
Q ss_pred CCCCcEEEEEecCCCceEEEEEE
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d 328 (729)
||+|.++.+++. +...||.+.
T Consensus 626 SPngD~LAT~Hv--d~~gIylWs 646 (910)
T KOG1539|consen 626 SPNGDFLATVHV--DQNGIYLWS 646 (910)
T ss_pred CCCCCEEEEEEe--cCceEEEEE
Confidence 999995555554 445566654
No 314
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=97.09 E-value=0.025 Score=57.35 Aligned_cols=160 Identities=12% Similarity=0.088 Sum_probs=101.0
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCC---CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.|.+.+|.++.+-..+..+.+|.+..+ +..+.|+..- .+...+++-..|.|--.-+++++..+ ..+.+
T Consensus 88 ~w~PfnD~vIASgSeD~~v~vW~IPe~-~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D--------n~v~i 158 (472)
T KOG0303|consen 88 DWCPFNDCVIASGSEDTKVMVWQIPEN-GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD--------NTVSI 158 (472)
T ss_pred ccCccCCceeecCCCCceEEEEECCCc-ccccCcccceEEEeecceeEEEEeecccchhhHhhccCC--------ceEEE
Confidence 466778877777667777878777542 4333333210 01156788888999777676665433 56889
Q ss_pred EEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 226 IALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
+++++|+...-...++...+..|+-||.+|+-+.. ...|.++|.. .|++.. ....+. + ....+..|
T Consensus 159 Wnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttck--------DKkvRv~dpr-~~~~v~--e~~~he-G--~k~~Raif 224 (472)
T KOG0303|consen 159 WNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCK--------DKKVRVIDPR-RGTVVS--EGVAHE-G--AKPARAIF 224 (472)
T ss_pred EeccCCceeeecCCCCeEEEEEeccCCceeeeecc--------cceeEEEcCC-CCcEee--eccccc-C--CCcceeEE
Confidence 99999875433336677788999999999987663 2448888887 676522 222222 1 33457789
Q ss_pred CCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 306 SSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 306 spDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
..+|+++-+.-......++.++|++.
T Consensus 225 l~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 225 LASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred eccCceeeeccccccccceeccCccc
Confidence 99997433332223445666777644
No 315
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.09 E-value=0.0069 Score=68.87 Aligned_cols=134 Identities=11% Similarity=0.056 Sum_probs=81.4
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC----------Cc---------eEEeeeCCCeeeeeeeCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----------QN---------IQVLVSGSDFYAFPRMDPR 251 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~----------g~---------~~~lt~~~~~~~~~~~SPD 251 (729)
..+.-++|||||++++.-.++. .|.++..+. |. ...|..........+||||
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~---------~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~ 140 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDR---------LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPD 140 (942)
T ss_pred CceeEEEECCCCCeEeeccCcc---------eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCC
Confidence 3456678999999988776653 233333331 11 1122223345667899999
Q ss_pred CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcC
Q 004816 252 GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 252 G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~ 330 (729)
+++|+-.+.+ ..|.+++.. +.+. ...+.++. .-+-.+.|.|=|+ ++-++++ ..-.+|+.+ +
T Consensus 141 ~~~lvS~s~D--------nsViiwn~~-tF~~--~~vl~~H~----s~VKGvs~DP~Gky~ASqsdD--rtikvwrt~-d 202 (942)
T KOG0973|consen 141 DSLLVSVSLD--------NSVIIWNAK-TFEL--LKVLRGHQ----SLVKGVSWDPIGKYFASQSDD--RTLKVWRTS-D 202 (942)
T ss_pred ccEEEEeccc--------ceEEEEccc-ccee--eeeeeccc----ccccceEECCccCeeeeecCC--ceEEEEEcc-c
Confidence 9999877743 347888766 4433 56667765 6667899999998 5444443 445566532 2
Q ss_pred CCeEEEeecc------CccccCCcccc
Q 004816 331 NNEVLAIYSL------DAEFSRPLWVF 351 (729)
Q Consensus 331 ~g~~~~l~~~------~~~~~~~~w~~ 351 (729)
-+-.+.++.. ..-+..+.|+|
T Consensus 203 w~i~k~It~pf~~~~~~T~f~RlSWSP 229 (942)
T KOG0973|consen 203 WGIEKSITKPFEESPLTTFFLRLSWSP 229 (942)
T ss_pred ceeeEeeccchhhCCCcceeeecccCC
Confidence 3555556521 12344577887
No 316
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.08 E-value=0.02 Score=57.34 Aligned_cols=238 Identities=10% Similarity=-0.012 Sum_probs=136.5
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCee-cCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--c
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLP-ITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--N 232 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~-lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~ 232 (729)
.++++..+++.|+++|..+ ++... |-.. ...+.+.+|+.-|+.++-.+.+- .+.++|.++- .
T Consensus 121 ~~v~~as~d~tikv~D~~t--g~~e~~LrGH----t~sv~di~~~a~Gk~l~tcSsDl---------~~~LWd~~~~~~c 185 (406)
T KOG0295|consen 121 ALVVSASEDATIKVFDTET--GELERSLRGH----TDSVFDISFDASGKYLATCSSDL---------SAKLWDFDTFFRC 185 (406)
T ss_pred eEEEEecCCceEEEEEccc--hhhhhhhhcc----ccceeEEEEecCccEEEecCCcc---------chhheeHHHHHHH
Confidence 5777777888999999988 65432 2222 34478999999999877665443 2555676642 2
Q ss_pred eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 233 IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 233 ~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
.+.+.......+.+.+=|-|.+|+-.+.+ ..|..++++ +|-. +..+.+.. ..+.-++.+.||.|+
T Consensus 186 ~ks~~gh~h~vS~V~f~P~gd~ilS~srD--------~tik~We~~-tg~c--v~t~~~h~----ewvr~v~v~~DGti~ 250 (406)
T KOG0295|consen 186 IKSLIGHEHGVSSVFFLPLGDHILSCSRD--------NTIKAWECD-TGYC--VKTFPGHS----EWVRMVRVNQDGTII 250 (406)
T ss_pred HHHhcCcccceeeEEEEecCCeeeecccc--------cceeEEecc-ccee--EEeccCch----HhEEEEEecCCeeEE
Confidence 23333334456778888999888766533 337778888 6754 55666665 445566778898755
Q ss_pred EEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCc--ceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 313 FVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGIN--SYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~--~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
..... ...-++|. .++++.+.+. ..+.-+.--.|.+... +..+.....++..++....+|+...+|-+ .+|.
T Consensus 251 As~s~-dqtl~vW~--~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv--~tg~ 325 (406)
T KOG0295|consen 251 ASCSN-DQTLRVWV--VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDV--STGM 325 (406)
T ss_pred EecCC-CceEEEEE--eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEec--cCCe
Confidence 44433 33445554 4455333222 1111111123332211 00000000144568888888888888855 4554
Q ss_pred -eEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 390 -LSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 390 -~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
+-.|-.....|.++ ..+++++++..+.+. .|-.+|++.+
T Consensus 326 cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDk---tlrvwdl~~~ 366 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVAFSPGGKYILSCADDK---TLRVWDLKNL 366 (406)
T ss_pred EEEEEecccceeeeeEEcCCCeEEEEEecCC---cEEEEEeccc
Confidence 22333445567776 677788887777543 3445555554
No 317
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.05 E-value=0.0052 Score=63.64 Aligned_cols=175 Identities=13% Similarity=0.178 Sum_probs=100.6
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|.+++..++++...++.|..||+.+ ++. ....+..-..+.+..|-|+|++.+-++++. .+.+++..
T Consensus 307 f~pd~~n~fl~G~sd~ki~~wDiRs--~kv---vqeYd~hLg~i~~i~F~~~g~rFissSDdk---------s~riWe~~ 372 (503)
T KOG0282|consen 307 FHPDNQNIFLVGGSDKKIRQWDIRS--GKV---VQEYDRHLGAILDITFVDEGRRFISSSDDK---------SVRIWENR 372 (503)
T ss_pred cCCCCCcEEEEecCCCcEEEEeccc--hHH---HHHHHhhhhheeeeEEccCCceEeeeccCc---------cEEEEEcC
Confidence 4455557777777788999999987 542 222111124457888999999877666543 35555655
Q ss_pred CCceEEeeeCCCeeeee--eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 230 GQNIQVLVSGSDFYAFP--RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 230 ~g~~~~lt~~~~~~~~~--~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
.+-...+.......+-| ..+|.|++++-.+. ...|+++.+..--.......+++.... ++...+.+||
T Consensus 373 ~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~--------dN~i~ifs~~~~~r~nkkK~feGh~va--Gys~~v~fSp 442 (503)
T KOG0282|consen 373 IPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM--------DNYIAIFSTVPPFRLNKKKRFEGHSVA--GYSCQVDFSP 442 (503)
T ss_pred CCccchhhcchhhccCcceecCCCCCeehhhcc--------CceEEEEecccccccCHhhhhcceecc--CceeeEEEcC
Confidence 44443333333333334 56899998876553 345777765411112223334443211 5567789999
Q ss_pred CCcEEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccc
Q 004816 308 KGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVF 351 (729)
Q Consensus 308 DG~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~ 351 (729)
||+.++..+. .| .++.+|-.+-+.. .+-..+.-.....|.|
T Consensus 443 DG~~l~SGds-dG--~v~~wdwkt~kl~~~lkah~~~ci~v~wHP 484 (503)
T KOG0282|consen 443 DGRTLCSGDS-DG--KVNFWDWKTTKLVSKLKAHDQPCIGVDWHP 484 (503)
T ss_pred CCCeEEeecC-Cc--cEEEeechhhhhhhccccCCcceEEEEecC
Confidence 9996666655 45 4555665554322 2222333444566776
No 318
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=97.04 E-value=0.0094 Score=60.50 Aligned_cols=188 Identities=11% Similarity=0.003 Sum_probs=114.5
Q ss_pred CccCceEEcCCCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECC-EEEEEECCCCcE
Q 004816 89 KRLGGTAVDGHGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGD-TVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~pg~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~l 167 (729)
+.++++++||.+..|...+ ++|+..||-..-. -+++.|.. +++...+..|.+. .++++...++-+
T Consensus 181 eaIRdlafSpnDskF~t~S---dDg~ikiWdf~~~--kee~vL~G---------HgwdVksvdWHP~kgLiasgskDnlV 246 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCS---DDGTIKIWDFRMP--KEERVLRG---------HGWDVKSVDWHPTKGLIASGSKDNLV 246 (464)
T ss_pred hhhheeccCCCCceeEEec---CCCeEEEEeccCC--chhheecc---------CCCCcceeccCCccceeEEccCCcee
Confidence 5788999999555555544 6788889876544 14455532 3455566666655 466776667778
Q ss_pred EEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-eEEeeeCCCeeeee
Q 004816 168 YKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-IQVLVSGSDFYAFP 246 (729)
Q Consensus 168 ~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-~~~lt~~~~~~~~~ 246 (729)
-+||..++ ...-.|... ...+...+|+|+|.+|+..+.+. .+-++|+.+-+ ....-.....+...
T Consensus 247 KlWDprSg-~cl~tlh~H----KntVl~~~f~~n~N~Llt~skD~---------~~kv~DiR~mkEl~~~r~Hkkdv~~~ 312 (464)
T KOG0284|consen 247 KLWDPRSG-SCLATLHGH----KNTVLAVKFNPNGNWLLTGSKDQ---------SCKVFDIRTMKELFTYRGHKKDVTSL 312 (464)
T ss_pred EeecCCCc-chhhhhhhc----cceEEEEEEcCCCCeeEEccCCc---------eEEEEehhHhHHHHHhhcchhhheee
Confidence 89999872 233333333 46788899999999988877653 56677876432 22222344567778
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
.|+|=-.-|..+... + ..|+.+.+.....+ ..+-...+ ..+...+|.|=|.|+.....
T Consensus 313 ~WhP~~~~lftsgg~------D-gsvvh~~v~~~~p~--~~i~~AHd----~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGS------D-GSVVHWVVGLEEPL--GEIPPAHD----GEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred ccccccccceeeccC------C-CceEEEeccccccc--cCCCcccc----cceeeeeccccceeEeecCC
Confidence 999977777544421 1 12433333300111 11223334 56678889999986666443
No 319
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.054 Score=53.37 Aligned_cols=117 Identities=9% Similarity=-0.028 Sum_probs=71.2
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
....||+-|..|+.-+.+ +.|.++|..+-.+- .|+..-......+||+||++|.-.+.+ ..+
T Consensus 27 ~~~~Fs~~G~~lAvGc~n---------G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D--------~si 89 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCAN---------GRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRD--------WSI 89 (405)
T ss_pred ceEEeccCcceeeeeccC---------CcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCC--------cee
Confidence 456799999988776654 46888899885543 344444456788999999999766522 337
Q ss_pred EEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 273 WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
-++|+- .|..-....+. ..+....|.|-.+ .+....- +.. -++++...++.+.|.
T Consensus 90 ~lwDl~-~gs~l~rirf~-------spv~~~q~hp~k~n~~va~~~-~~s--p~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 90 KLWDLL-KGSPLKRIRFD-------SPVWGAQWHPRKRNKCVATIM-EES--PVVIDFSDPKHSVLP 145 (405)
T ss_pred EEEecc-CCCceeEEEcc-------CccceeeeccccCCeEEEEEe-cCC--cEEEEecCCceeecc
Confidence 788888 56642222222 2234567877655 4444433 222 333444445555554
No 320
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.02 E-value=0.039 Score=58.53 Aligned_cols=121 Identities=17% Similarity=0.255 Sum_probs=74.0
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeee
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYA 244 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~ 244 (729)
+.||+++.++. ....+|... ..+.+++|+|+|+..+.+..--+ ..+-++|+.+.-+-.+.++ ..+
T Consensus 251 q~Lyll~t~g~-s~~V~L~k~-----GPVhdv~W~~s~~EF~VvyGfMP-------Akvtifnlr~~~v~df~eg--pRN 315 (566)
T KOG2315|consen 251 QTLYLLATQGE-SVSVPLLKE-----GPVHDVTWSPSGREFAVVYGFMP-------AKVTIFNLRGKPVFDFPEG--PRN 315 (566)
T ss_pred ceEEEEEecCc-eEEEecCCC-----CCceEEEECCCCCEEEEEEeccc-------ceEEEEcCCCCEeEeCCCC--Ccc
Confidence 47999999841 223344432 34688999999998766644322 4466668875433333333 345
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFV 314 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~ 314 (729)
..-|||-|+.|++...+. -..++-++|+. +-+. +..+.. ....-..|+|||+.+++
T Consensus 316 ~~~fnp~g~ii~lAGFGN-----L~G~mEvwDv~-n~K~--i~~~~a------~~tt~~eW~PdGe~flT 371 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGN-----LPGDMEVWDVP-NRKL--IAKFKA------ANTTVFEWSPDGEYFLT 371 (566)
T ss_pred ceEECCCCCEEEEeecCC-----CCCceEEEecc-chhh--cccccc------CCceEEEEcCCCcEEEE
Confidence 678999999999888654 23457777877 4221 211111 22245689999994433
No 321
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.00 E-value=0.0076 Score=65.72 Aligned_cols=139 Identities=19% Similarity=0.191 Sum_probs=80.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc---------h--------hhhHHHhhCCcE
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL---------N--------LSIQYWTSRGWA 523 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~---------~--------~~~~~la~~G~~ 523 (729)
+.+... .+..+..|++...+ ..+..|+||++.|||++...... . ..-..|.+ -..
T Consensus 16 l~~~~~-~~~~lfyw~~~s~~------~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~-~an 87 (415)
T PF00450_consen 16 LPVNDN-ENAHLFYWFFESRN------DPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK-FAN 87 (415)
T ss_dssp EEECTT-TTEEEEEEEEE-SS------GGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG-TSE
T ss_pred EecCCC-CCcEEEEEEEEeCC------CCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc-ccc
Confidence 344433 67889988887655 24667999999999986543210 0 01112223 278
Q ss_pred EEEecCCCCCCCchhHHHhhccCCC-cccHHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh-----C-----
Q 004816 524 FVDVNYGGSTGYGREFRERLLGRWG-IVDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA-----F----- 591 (729)
Q Consensus 524 v~~~d~rGs~g~g~~~~~~~~~~~~-~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-----~----- 591 (729)
++.+|.+-+.|+...-.... ..+. ....+|+..++. |+...+.....++.|.|.||||..+-.++. .
T Consensus 88 ~l~iD~PvGtGfS~~~~~~~-~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~ 166 (415)
T PF00450_consen 88 LLFIDQPVGTGFSYGNDPSD-YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQ 166 (415)
T ss_dssp EEEE--STTSTT-EESSGGG-GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--S
T ss_pred eEEEeecCceEEeecccccc-ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccc
Confidence 99999776677654422221 1111 123566666665 444445556669999999999987755542 2
Q ss_pred -CCcceEEEEeccccChh
Q 004816 592 -RDTFKAGASLYGVADLS 608 (729)
Q Consensus 592 -~~~~~a~v~~~~~~d~~ 608 (729)
.-.++++++.+|+++..
T Consensus 167 ~~inLkGi~IGng~~dp~ 184 (415)
T PF00450_consen 167 PKINLKGIAIGNGWIDPR 184 (415)
T ss_dssp TTSEEEEEEEESE-SBHH
T ss_pred cccccccceecCcccccc
Confidence 34589999999988764
No 322
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.00 E-value=0.088 Score=53.72 Aligned_cols=194 Identities=10% Similarity=0.042 Sum_probs=104.0
Q ss_pred eEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCC-CCcE-EEEEEecCCCCeeeeEEecCCCC-Ccc
Q 004816 221 TEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPW-DKAE-LWVGYISENGDVYKRVCVAGFDP-TIV 297 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~-~~~~-l~~~d~~~~g~~~~~~~~~~~~~-~~~ 297 (729)
.++|++|.++++..=..+ .++..++..||||+.+|..+.--+.... ..++ |-++|.. +=.......++.... ...
T Consensus 17 ~rv~viD~d~~k~lGmi~-~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~-TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMID-TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQ-TLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEE-EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETT-TTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEee-cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecC-cCcccceEecCCcchheec
Confidence 689999999887543222 1244567889999999865521111000 1222 5566766 433333334443310 101
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCe
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGR 377 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~ 377 (729)
.+......|.||+.+++.+- .-...+-++|++.++...-.+-++.... ... .++. +.+-..+|.
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~PGC~~i----------yP~----~~~~-F~~lC~DGs 158 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDTPGCWLI----------YPS----GNRG-FSMLCGDGS 158 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEGTSEEEE----------EEE----ETTE-EEEEETTSC
T ss_pred ccccceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecCCCEEEE----------Eec----CCCc-eEEEecCCc
Confidence 23345678999995555554 4567899999999887654433322211 111 2334 346667888
Q ss_pred EEEEEEECCCCceEeeccCCcc-eEEe------eeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 378 SYLGILDDFGHSLSLLDIPFTD-IDNI------TLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 378 ~~ly~~d~~~g~~~~lt~~~~~-v~~~------~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
..-+.+|.+|+..+..+.-+.. -+.+ ...+++++|.+- .+.+|.+++.+.+.+..
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy----~G~v~~~dlsg~~~~~~ 220 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY----EGNVYSADLSGDSAKFG 220 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBT----TSEEEEEEETTSSEEEE
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEec----CCEEEEEeccCCccccc
Confidence 7778887766665433322211 1112 233455655443 25799999888775443
No 323
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.13 Score=55.22 Aligned_cols=205 Identities=12% Similarity=0.111 Sum_probs=116.7
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
....+.+++........+.++|..+ ... ..+..+ .......++|+|+.++....... ...+.++|.
T Consensus 81 v~~~~~~vyv~~~~~~~v~vid~~~--~~~~~~~~vG-----~~P~~~~~~~~~~~vYV~n~~~~------~~~vsvid~ 147 (381)
T COG3391 81 VNPAGNKVYVTTGDSNTVSVIDTAT--NTVLGSIPVG-----LGPVGLAVDPDGKYVYVANAGNG------NNTVSVIDA 147 (381)
T ss_pred eCCCCCeEEEecCCCCeEEEEcCcc--cceeeEeeec-----cCCceEEECCCCCEEEEEecccC------CceEEEEeC
Confidence 3334555655555566888888665 221 111111 12367789999999655543211 367999999
Q ss_pred CCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE--ecCCCCCccccccCceeC
Q 004816 229 NGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC--VAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 229 ~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~--~~~~~~~~~~~~~~~~ws 306 (729)
++++............+.+++|||++++.... ....|.++|.+ +.....-.. ..... .......++
T Consensus 148 ~t~~~~~~~~vG~~P~~~a~~p~g~~vyv~~~-------~~~~v~vi~~~-~~~v~~~~~~~~~~~~----~~P~~i~v~ 215 (381)
T COG3391 148 ATNKVTATIPVGNTPTGVAVDPDGNKVYVTNS-------DDNTVSVIDTS-GNSVVRGSVGSLVGVG----TGPAGIAVD 215 (381)
T ss_pred CCCeEEEEEecCCCcceEEECCCCCeEEEEec-------CCCeEEEEeCC-CcceeccccccccccC----CCCceEEEC
Confidence 88776544332222267799999999876662 23558899866 333211000 01111 344678899
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
+||..+|+.+.......+.++|..++...... ..... .+ ....+.| +++.+|..... ...++.+|.
T Consensus 216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~------~~v~~~p---~g~~~yv~~~~--~~~V~vid~ 282 (381)
T COG3391 216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--AP------RGVAVDP---AGKAAYVANSQ--GGTVSVIDG 282 (381)
T ss_pred CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CC------CceeECC---CCCEEEEEecC--CCeEEEEeC
Confidence 99995555554244468999999888766542 11100 01 1112222 66666665443 446777777
Q ss_pred CCCceEe
Q 004816 386 FGHSLSL 392 (729)
Q Consensus 386 ~~g~~~~ 392 (729)
.+..+..
T Consensus 283 ~~~~v~~ 289 (381)
T COG3391 283 ATDRVVK 289 (381)
T ss_pred CCCceee
Confidence 6655443
No 324
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.94 E-value=0.2 Score=59.74 Aligned_cols=210 Identities=9% Similarity=0.035 Sum_probs=107.8
Q ss_pred cCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCc----eEEEECCEEEEEECCCC
Q 004816 91 LGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGG----AFRIFGDTVIFSNYKDQ 165 (729)
Q Consensus 91 ~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~ 165 (729)
+....|++ .+.+|++...........+-+...+ ++...++.-+... . ...+.. .|..+.+.+++. ..+|
T Consensus 24 ~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~--~~~~~l~s~~~~~--~-~~~~~~ivs~~yl~d~~~l~~~-~~~G 97 (928)
T PF04762_consen 24 ITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQD--GSVEVLASWDAPL--P-DDPNDKIVSFQYLADSESLCIA-LASG 97 (928)
T ss_pred cceEEEecCCCeEEEEECCCCcceEEEEEeeccC--CceeEEEeccccC--C-cCCCCcEEEEEeccCCCcEEEE-ECCc
Confidence 34567787 7888888763322244445444433 1222333211000 0 001111 122233344333 3577
Q ss_pred cEEEE----eCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE----------cCC-
Q 004816 166 RLYKH----SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA----------LNG- 230 (729)
Q Consensus 166 ~l~~~----d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d----------l~~- 230 (729)
+|.++ +.++ ...+.+... ...+...+||||++.|+.+.... +|.+++ +..
T Consensus 98 di~~~~~~~~~~~--~~~E~VG~v----d~GI~a~~WSPD~Ella~vT~~~---------~l~~mt~~fd~i~E~~l~~~ 162 (928)
T PF04762_consen 98 DIILVREDPDPDE--DEIEIVGSV----DSGILAASWSPDEELLALVTGEG---------NLLLMTRDFDPISEVPLDSD 162 (928)
T ss_pred eEEEEEccCCCCC--ceeEEEEEE----cCcEEEEEECCCcCEEEEEeCCC---------EEEEEeccceEEEEeecCcc
Confidence 88888 5555 556666554 24467789999999988886532 122211 110
Q ss_pred --C-----------ceEEe------------ee------------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 231 --Q-----------NIQVL------------VS------------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 231 --g-----------~~~~l------------t~------------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
| +.+|. .. ..+.....+|-.||+++|....+.... ....|.
T Consensus 163 ~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~--~~R~iR 240 (928)
T PF04762_consen 163 DFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETG--SRRVIR 240 (928)
T ss_pred ccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCC--ceeEEE
Confidence 1 11111 00 011223457999999998777533220 135577
Q ss_pred EEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCC
Q 004816 274 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~ 331 (729)
+++-+ |.+.. ..+..+ +-...++|-|.|.++...++..+...|..+..+|
T Consensus 241 Vy~Re--G~L~s--tSE~v~----gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG 290 (928)
T PF04762_consen 241 VYSRE--GELQS--TSEPVD----GLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG 290 (928)
T ss_pred EECCC--ceEEe--ccccCC----CccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC
Confidence 77644 55421 122222 3335789999999666665545566676666554
No 325
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.90 E-value=0.007 Score=63.56 Aligned_cols=73 Identities=11% Similarity=0.140 Sum_probs=46.1
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK 318 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~ 318 (729)
+.+.....+|||||++||.++. ..-|.++|.+ +.++ +-+....- ..+.-++|||||+++.+...
T Consensus 289 ~~g~in~f~FS~DG~~LA~VSq--------DGfLRvF~fd-t~eL--lg~mkSYF----GGLLCvcWSPDGKyIvtGGE- 352 (636)
T KOG2394|consen 289 GEGSINEFAFSPDGKYLATVSQ--------DGFLRIFDFD-TQEL--LGVMKSYF----GGLLCVCWSPDGKYIVTGGE- 352 (636)
T ss_pred ccccccceeEcCCCceEEEEec--------CceEEEeecc-HHHH--HHHHHhhc----cceEEEEEcCCccEEEecCC-
Confidence 4446678899999999999983 3448888887 3332 11222111 34456799999996655544
Q ss_pred CCceEEEEE
Q 004816 319 NGFWNLHKW 327 (729)
Q Consensus 319 ~g~~~l~~~ 327 (729)
++--.+|-+
T Consensus 353 DDLVtVwSf 361 (636)
T KOG2394|consen 353 DDLVTVWSF 361 (636)
T ss_pred cceEEEEEe
Confidence 344455544
No 326
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.049 Score=52.13 Aligned_cols=203 Identities=11% Similarity=0.039 Sum_probs=115.6
Q ss_pred ecceecC--CCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEee--eCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 194 ADGIFDP--RFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVLV--SGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 194 ~~~~~SP--dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~lt--~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
....||| +++..+.+...-+-. ....||+++++. +.++.+- .-.+.....+||+.-..++++...+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~---G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD------ 82 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLA---GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD------ 82 (311)
T ss_pred ceeEecccccchhheeehhhcccc---cCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC------
Confidence 4567888 555433333332211 147899999963 3333332 2345567889999888887777432
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP 347 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~ 347 (729)
..|.++|+. ....++..+.+.. .-+..+.|++--+ .+.++.. .+.-.||.-+.. ..++........+...
T Consensus 83 -GSLrl~d~~--~~s~Pi~~~kEH~----~EV~Svdwn~~~r~~~ltsSW-D~TiKLW~~~r~-~Sv~Tf~gh~~~Iy~a 153 (311)
T KOG0277|consen 83 -GSLRLFDLT--MPSKPIHKFKEHK----REVYSVDWNTVRRRIFLTSSW-DGTIKLWDPNRP-NSVQTFNGHNSCIYQA 153 (311)
T ss_pred -ceEEEeccC--CCCcchhHHHhhh----hheEEeccccccceeEEeecc-CCceEeecCCCC-cceEeecCCccEEEEE
Confidence 347777754 2223566666665 5556778887655 6666665 666667644321 1222222333344455
Q ss_pred cccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe--eeeCCEEEEEEeCCCCCceEEE
Q 004816 348 LWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI--TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 348 ~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
.|+| ....++.+...++.-+||-++..++... +..+..++... ..-+..+++.++... .++.
T Consensus 154 ~~sp------------~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~---~vr~ 217 (311)
T KOG0277|consen 154 AFSP------------HIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDN---LVRG 217 (311)
T ss_pred ecCC------------CCCCeEEEccCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCc---eEEE
Confidence 6665 3334666666788889998877654443 55555444443 233445555554432 4555
Q ss_pred EEcCC
Q 004816 426 VTLDD 430 (729)
Q Consensus 426 ~d~~~ 430 (729)
+|+..
T Consensus 218 wDir~ 222 (311)
T KOG0277|consen 218 WDIRN 222 (311)
T ss_pred Eehhh
Confidence 55543
No 327
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=96.90 E-value=0.0016 Score=69.99 Aligned_cols=90 Identities=13% Similarity=0.098 Sum_probs=63.5
Q ss_pred cccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHH
Q 004816 507 RGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTL 586 (729)
Q Consensus 507 ~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~ 586 (729)
...|..+++.|.+.||.+ ..|++| +|.+|+.... ....++++...++.+.+.. ..+++.|+||||||.++.
T Consensus 107 ~~~~~~li~~L~~~GY~~-~~dL~g---~gYDwR~~~~---~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 107 VYYFHDMIEQLIKWGYKE-GKTLFG---FGYDFRQSNR---LPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHHHHHHHHHHHHcCCcc-CCCccc---CCCCcccccc---HHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHH
Confidence 356777899999999866 778874 4455554211 1122577777777776653 246899999999999999
Q ss_pred HHHh-CCCc----ceEEEEecccc
Q 004816 587 AALA-FRDT----FKAGASLYGVA 605 (729)
Q Consensus 587 ~~~~-~~~~----~~a~v~~~~~~ 605 (729)
.++. +|+. ++..|++++..
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECCCC
Confidence 8887 6653 67777776643
No 328
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.0079 Score=68.82 Aligned_cols=255 Identities=12% Similarity=0.111 Sum_probs=137.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCccccccccc--CCceEEEECCEEEEEECCCC
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEY--GGGAFRIFGDTVIFSNYKDQ 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~ 165 (729)
.+...+.|.+ |..--=+=....++|...||..+.-..+....++.. ...|.- -+..|....+.++-+...+|
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~-----~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT-----KSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh-----hcccCCceeeeeccccCCceeeccCCCC
Confidence 4556778887 654211111233678877775543100122222211 011110 12334444555666666778
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeC--CCe
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSG--SDF 242 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~--~~~ 242 (729)
+|++||+.. -..+.+.+.......+...+|...-++|+...... ....++|+...++ ..+... ...
T Consensus 140 eI~iWDlnn---~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~s--------g~~~iWDlr~~~pii~ls~~~~~~~ 208 (1049)
T KOG0307|consen 140 EILIWDLNK---PETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPS--------GRAVIWDLRKKKPIIKLSDTPGRMH 208 (1049)
T ss_pred cEEEeccCC---cCCCCCCCCCCCcccceEeccchhhhHHhhccCCC--------CCceeccccCCCcccccccCCCccc
Confidence 999999974 33344433211123445566766666665554332 3456678875432 233322 234
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCc
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGF 321 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~ 321 (729)
.+...|.||+..-+.+..++.+ ..-|-++|+. .-. .....+.++. .++-.+.|.+.+. ++..+.. .
T Consensus 209 ~S~l~WhP~~aTql~~As~dd~----~PviqlWDlR-~as-sP~k~~~~H~----~GilslsWc~~D~~lllSsgk---D 275 (1049)
T KOG0307|consen 209 CSVLAWHPDHATQLLVASGDDS----APVIQLWDLR-FAS-SPLKILEGHQ----RGILSLSWCPQDPRLLLSSGK---D 275 (1049)
T ss_pred eeeeeeCCCCceeeeeecCCCC----CceeEeeccc-ccC-Cchhhhcccc----cceeeeccCCCCchhhhcccC---C
Confidence 5688999998776666655543 2345666654 221 3355566666 6778899999875 6666544 3
Q ss_pred eEEEEEEcCCCeEEE-eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 322 WNLHKWIESNNEVLA-IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~-l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
.++..+++++|+..- +-....++.+-.|.+ .+-.++..+.-+|...||.+-
T Consensus 276 ~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~p------------r~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELPAQGNWCFDVQWCP------------RNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CCeeEecCCCceEeeecCCCCcceeeeeecC------------CCcchhhhheeccceeeeeee
Confidence 568888999887543 222222333445544 222344445557877887663
No 329
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=96.84 E-value=0.23 Score=53.00 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=92.3
Q ss_pred ecceecCCCCEEEEEEeccCC---CCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 194 ADGIFDPRFNRYVTVREDRRQ---DALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~---~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
-...|.+-|.-|+.+...+-+ ......+.||.++.++.....=....+..-...|||+|+..+.+-.- || .
T Consensus 221 vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGf---MP---A 294 (566)
T KOG2315|consen 221 VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGF---MP---A 294 (566)
T ss_pred eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEec---cc---c
Confidence 456799999988877643322 22234578999999844333222334556678999999998877622 22 3
Q ss_pred EEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccC-ccccCCcc
Q 004816 271 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLD-AEFSRPLW 349 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~-~~~~~~~w 349 (729)
.+-++|+. +.. +-.+... .-..+.|+|-|+++.++.-.+-...+-++|..+ .+.|.... .+.+-..|
T Consensus 295 kvtifnlr--~~~--v~df~eg------pRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~tt~~eW 362 (566)
T KOG2315|consen 295 KVTIFNLR--GKP--VFDFPEG------PRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAANTTVFEW 362 (566)
T ss_pred eEEEEcCC--CCE--eEeCCCC------CccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccCCceEEEE
Confidence 37777776 433 2222222 224678999999555443312233455567655 23333222 12223456
Q ss_pred cccCcceeeeeecCCCCEEEEEEEE-----CCeEEEEEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQ-----NGRSYLGILD 384 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~-----~g~~~ly~~d 384 (729)
+| ||.+|+..... |+...||.++
T Consensus 363 ~P------------dGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 363 SP------------DGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred cC------------CCcEEEEEeccccEEecCCeEEEEec
Confidence 65 77776655432 4555677663
No 330
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.84 E-value=0.22 Score=52.38 Aligned_cols=92 Identities=17% Similarity=0.322 Sum_probs=58.0
Q ss_pred eEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-eeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~~~~~~~~~~~~~~~ 299 (729)
...+++|.++....++-......+-.++||||..||..+. +..||++.++.+|.. .......+ ..
T Consensus 428 G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~--------d~~iyiy~Vs~~g~~y~r~~k~~g------s~ 493 (626)
T KOG2106|consen 428 GRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSH--------DNHIYIYRVSANGRKYSRVGKCSG------SP 493 (626)
T ss_pred ceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecC--------CCeEEEEEECCCCcEEEEeeeecC------ce
Confidence 5688899887655555444556677899999999998773 234777777755542 11212222 35
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEc
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~ 329 (729)
+....||+|++.+ .++. +...|..+.+
T Consensus 494 ithLDwS~Ds~~~-~~~S--~d~eiLyW~~ 520 (626)
T KOG2106|consen 494 ITHLDWSSDSQFL-VSNS--GDYEILYWKP 520 (626)
T ss_pred eEEeeecCCCceE-Eecc--CceEEEEEcc
Confidence 5788999999733 4443 4455555544
No 331
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.84 E-value=0.038 Score=53.63 Aligned_cols=175 Identities=14% Similarity=0.127 Sum_probs=93.9
Q ss_pred EEEEEcCCCCCCccc--cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCC
Q 004816 494 LLVKSHGGPTSEARG--ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEK 571 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~--~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 571 (729)
.||.+-||..-...+ .|+.+.+.|+++||.|++.-|.- ++-.. .... .....+..+++.|.+....+..
T Consensus 18 gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~--tfDH~--~~A~-----~~~~~f~~~~~~L~~~~~~~~~ 88 (250)
T PF07082_consen 18 GVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVV--TFDHQ--AIAR-----EVWERFERCLRALQKRGGLDPA 88 (250)
T ss_pred EEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCC--CCcHH--HHHH-----HHHHHHHHHHHHHHHhcCCCcc
Confidence 577777765433333 47778899999999999999963 22211 1111 1134456677777766544433
Q ss_pred --cEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccChh-----HHhhhc-chhhhhhhhhhcCChhhhhhcCcccccC
Q 004816 572 --RLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVADLS-----MLRAET-HKFESRYIDNLVGSEKDYYEKSPINFVD 642 (729)
Q Consensus 572 --ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~sp~~~~~ 642 (729)
.+.=+|||+|+.+-+.+.. ++..-++-++++ +-|.. .+.... .....++...+.+. ....+. .
T Consensus 89 ~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliS-FNN~~a~~aIP~~~~l~~~l~~EF~PsP~ET-~~li~~---~--- 160 (250)
T PF07082_consen 89 YLPVYGVGHSLGCKLHLLIGSLFDVERAGNILIS-FNNFPADEAIPLLEQLAPALRLEFTPSPEET-RRLIRE---S--- 160 (250)
T ss_pred cCCeeeeecccchHHHHHHhhhccCcccceEEEe-cCChHHHhhCchHhhhccccccCccCCHHHH-HHHHHH---h---
Confidence 5777999999999888776 432223323221 11111 000000 00000111100000 011111 0
Q ss_pred CCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCC-CEEEEEECCCCcc
Q 004816 643 KFSCPIILFQGLEDKVVPPDQARKIYKALKENGL-PVALVEYEGEQHG 689 (729)
Q Consensus 643 ~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~-~~~~~~~~~~gH~ 689 (729)
..-...|+|.-.+|.. .++..+.+.|+.... -++....+| .|-
T Consensus 161 Y~~~rnLLIkF~~D~i---Dqt~~L~~~L~~r~~~~~~~~~L~G-~HL 204 (250)
T PF07082_consen 161 YQVRRNLLIKFNDDDI---DQTDELEQILQQRFPDMVSIQTLPG-NHL 204 (250)
T ss_pred cCCccceEEEecCCCc---cchHHHHHHHhhhccccceEEeCCC-CCC
Confidence 0123468888888876 688899999987633 356677775 685
No 332
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.83 E-value=0.26 Score=50.86 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=106.5
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
.+++...+..|++|..... ..+..+-.. ...+......|.|++++..+++. ....-|..+|..-..
T Consensus 275 ~v~~aSad~~i~vws~~~~-s~~~~~~~h----~~~V~~ls~h~tgeYllsAs~d~---------~w~Fsd~~~g~~lt~ 340 (506)
T KOG0289|consen 275 TVITASADEIIRVWSVPLS-SEPTSSRPH----EEPVTGLSLHPTGEYLLSASNDG---------TWAFSDISSGSQLTV 340 (506)
T ss_pred heeecCCcceEEeeccccc-cCccccccc----cccceeeeeccCCcEEEEecCCc---------eEEEEEccCCcEEEE
Confidence 3444444556777776541 222222222 23467778999999887776543 233446655543222
Q ss_pred eeCC---CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EE
Q 004816 237 VSGS---DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LF 312 (729)
Q Consensus 237 t~~~---~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~ 312 (729)
.... -.++...|.|||- .|.... .+..|-++|+. ++. +...++++. ..+..+.|+.+|- ++
T Consensus 341 vs~~~s~v~~ts~~fHpDgL--ifgtgt------~d~~vkiwdlk-s~~--~~a~Fpght----~~vk~i~FsENGY~La 405 (506)
T KOG0289|consen 341 VSDETSDVEYTSAAFHPDGL--IFGTGT------PDGVVKIWDLK-SQT--NVAKFPGHT----GPVKAISFSENGYWLA 405 (506)
T ss_pred EeeccccceeEEeeEcCCce--EEeccC------CCceEEEEEcC-Ccc--ccccCCCCC----CceeEEEeccCceEEE
Confidence 2221 2367789999995 343312 24568899998 554 356667765 6678889999996 33
Q ss_pred EEEecCCCceEEEEEEcCCCe-EEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 313 FVTDRKNGFWNLHKWIESNNE-VLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~-~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
..+++ + .+..+|+..-+ .+.+. ++.. +..++.|. ..+.++..+ ...-.||.++-.++++
T Consensus 406 t~add--~--~V~lwDLRKl~n~kt~~l~~~~---------~v~s~~fD----~SGt~L~~~--g~~l~Vy~~~k~~k~W 466 (506)
T KOG0289|consen 406 TAADD--G--SVKLWDLRKLKNFKTIQLDEKK---------EVNSLSFD----QSGTYLGIA--GSDLQVYICKKKTKSW 466 (506)
T ss_pred EEecC--C--eEEEEEehhhcccceeeccccc---------cceeEEEc----CCCCeEEee--cceeEEEEEecccccc
Confidence 33333 3 36677775422 22232 1111 23345553 333333333 3456788888778887
Q ss_pred Eeec
Q 004816 391 SLLD 394 (729)
Q Consensus 391 ~~lt 394 (729)
+.+.
T Consensus 467 ~~~~ 470 (506)
T KOG0289|consen 467 TEIK 470 (506)
T ss_pred eeee
Confidence 7664
No 333
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=96.82 E-value=0.0028 Score=69.43 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=65.7
Q ss_pred CCEEEEEcCCCCCCcc-ccchhhhHHHhh-CCcEEEEecCCCCCCCchhH--HHhhccCCC----cccHHHHHHHHHHHH
Q 004816 492 PPLLVKSHGGPTSEAR-GILNLSIQYWTS-RGWAFVDVNYGGSTGYGREF--RERLLGRWG----IVDVNDCCSCATFLV 563 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~-~~~~~~~~~la~-~G~~v~~~d~rGs~g~g~~~--~~~~~~~~~----~~~~~D~~~~~~~l~ 563 (729)
.|++|++-|. +.... .........+|+ .|-.++++.+|- ||.+. ......+.. .+.++|+...++++.
T Consensus 29 gpifl~~ggE-~~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~ 104 (434)
T PF05577_consen 29 GPIFLYIGGE-GPIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVK 104 (434)
T ss_dssp SEEEEEE--S-S-HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-CccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHH
Confidence 6888888554 22111 111113334444 599999999994 44432 121121211 234899999999998
Q ss_pred hCC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccccC
Q 004816 564 GSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGVAD 606 (729)
Q Consensus 564 ~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~~d 606 (729)
.+. ..+..+++++|.||||.+|.++-. +|+.|.++++-+++..
T Consensus 105 ~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~ 149 (434)
T PF05577_consen 105 KKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQ 149 (434)
T ss_dssp HHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CC
T ss_pred HhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceee
Confidence 653 345569999999999999999987 9999999999887653
No 334
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=96.79 E-value=0.15 Score=51.99 Aligned_cols=204 Identities=9% Similarity=0.002 Sum_probs=115.1
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc-------eEEeeeCCCeeeeeeeCCCCCeEEEEEecC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN-------IQVLVSGSDFYAFPRMDPRGERMAWIEWHH 262 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-------~~~lt~~~~~~~~~~~SPDG~~la~~~~~~ 262 (729)
...+-+..|+|-...++.+..++. .-.||.++-. +. +..|+..........|.|--.-+.+.+..
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~------~v~vW~IPe~-~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~- 152 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDT------KVMVWQIPEN-GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGS- 152 (472)
T ss_pred cccccccccCccCCceeecCCCCc------eEEEEECCCc-ccccCcccceEEEeecceeEEEEeecccchhhHhhccC-
Confidence 345678899998888877755431 2335554432 22 23344444566677999977777665522
Q ss_pred CCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCc
Q 004816 263 PNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA 342 (729)
Q Consensus 263 ~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~ 342 (729)
...+.++++. +|+. ...+. ++ .-+.++.|+-||.+++++.+ ...|-++|+.++++..-- ..
T Consensus 153 ------Dn~v~iWnv~-tgea--li~l~-hp----d~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr~~~~v~e~--~~ 213 (472)
T KOG0303|consen 153 ------DNTVSIWNVG-TGEA--LITLD-HP----DMVYSMSFNRDGSLLCTTCK---DKKVRVIDPRRGTVVSEG--VA 213 (472)
T ss_pred ------CceEEEEecc-CCce--eeecC-CC----CeEEEEEeccCCceeeeecc---cceeEEEcCCCCcEeeec--cc
Confidence 3458888988 6763 22222 43 45567899999996666655 245777899888654332 11
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEE-ECCeEEEEEEECCC----CceEeeccCCcceEEeeeeCCEEEEEEeCC
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYR-QNGRSYLGILDDFG----HSLSLLDIPFTDIDNITLGNDCLFVEGASG 417 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~-~~g~~~ly~~d~~~----g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~ 417 (729)
..+. ......|+. +++ ++-+.. +-...++.+.|.+. ...+.|.+..+.+-++.+++..++|..+..
T Consensus 214 heG~-----k~~Raifl~---~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 214 HEGA-----KPARAIFLA---SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred ccCC-----CcceeEEec---cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecC
Confidence 1111 011234552 333 333222 23344555555433 123344444444555566777888888877
Q ss_pred CCCceEEEEEcC
Q 004816 418 VEPSSVAKVTLD 429 (729)
Q Consensus 418 ~~~~~ly~~d~~ 429 (729)
+..-.+|.+..+
T Consensus 285 D~~IRYyEit~d 296 (472)
T KOG0303|consen 285 DSSIRYFEITNE 296 (472)
T ss_pred CcceEEEEecCC
Confidence 766667766543
No 335
>PRK13614 lipoprotein LpqB; Provisional
Probab=96.76 E-value=0.13 Score=57.27 Aligned_cols=177 Identities=15% Similarity=0.176 Sum_probs=98.3
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
....++.|+||+.++++..+. ..|++... ++..+.+..+. ....|.|+++| +| |+..+. ....
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~--------~~l~~~~~-g~~~~~~~~g~-~Lt~PS~d~~g-~v-Wtv~~g-----~~~~ 406 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSR--------TTLYTVSP-GQPARALTSGS-TLTRPSFSPQD-WV-WTAGPG-----GNGR 406 (573)
T ss_pred cccceeecCCCceEEEecCCC--------cEEEEecC-CCcceeeecCC-CccCCcccCCC-CE-EEeeCC-----CCce
Confidence 445678999999988884321 46887776 34666666654 46789999999 55 444222 1224
Q ss_pred EEEEEecCCCCeee--e-EEec-CCCCCccccccCceeCCCCc-EEEEEecCCCceEEEE--E-EcCCCeEEEeeccC--
Q 004816 272 LWVGYISENGDVYK--R-VCVA-GFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHK--W-IESNNEVLAIYSLD-- 341 (729)
Q Consensus 272 l~~~d~~~~g~~~~--~-~~~~-~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~--~-d~~~g~~~~l~~~~-- 341 (729)
|..+.-+.++.... . .... ..+ + ..+..++.|+||- ++++... .|..+|++ + ....|+.+.|+...
T Consensus 407 vv~~~~~g~~~~~~~~~~~v~~~~l~-g--~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~G~P~~L~~~~~~ 482 (573)
T PRK13614 407 IVAYRPTGVAEGAQAPTVTLTADWLA-G--RTVKELRVSREGVRALVISEQ-NGKSRVQVAGIVRNEDGTPRELTAPITL 482 (573)
T ss_pred EEEEecCCCcccccccceeecccccC-C--CeeEEEEECCCccEEEEEEEe-CCccEEEEEEEEeCCCCCeEEccCceec
Confidence 55554321222111 1 1111 111 1 2377889999998 7776654 45544542 3 23456666665221
Q ss_pred ---ccccCCcccccCcceeeeeecCCCCEEEEEE-EECCeEEEEEEECCCCceEeeccCCcceEEe
Q 004816 342 ---AEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLSLLDIPFTDIDNI 403 (729)
Q Consensus 342 ---~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s-~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~ 403 (729)
....+..|. ++..|++.. ..++...++++.+++|..+.+. +......+
T Consensus 483 ~~~~~~~sl~W~-------------~~~sl~V~~~~~~~~~~~~~v~v~~g~~~~l~-~~~~~~~i 534 (573)
T PRK13614 483 AADSDADTGAWV-------------GDSTVVVTKASATSNVVPELLSVDAGQPQQLA-PWTGLTSI 534 (573)
T ss_pred ccCCCcceeEEc-------------CCCEEEEEeccCCCcceEEEEEeCCCCcccCC-CcCCeEEE
Confidence 122233454 445555554 4456667888888777655444 33334444
No 336
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.68 E-value=0.68 Score=49.65 Aligned_cols=234 Identities=10% Similarity=0.001 Sum_probs=111.0
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
..++.+++ ...++.|+.+|..+ |+.. +..... .-...+. .++..+++...+ ..||.+|.++
T Consensus 63 v~~~~v~v-~~~~g~v~a~d~~t--G~~~W~~~~~~----~~~~~p~--v~~~~v~v~~~~---------g~l~ald~~t 124 (377)
T TIGR03300 63 VAGGKVYA-ADADGTVVALDAET--GKRLWRVDLDE----RLSGGVG--ADGGLVFVGTEK---------GEVIALDAED 124 (377)
T ss_pred EECCEEEE-ECCCCeEEEEEccC--CcEeeeecCCC----CcccceE--EcCCEEEEEcCC---------CEEEEEECCC
Confidence 34555544 44567899999877 5432 222211 0112233 356665544322 5799999988
Q ss_pred CceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCC
Q 004816 231 QNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 231 g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG 309 (729)
|++.- ...+......|.. ++.++++.. ....|+.+|.+ +|+..+.......... ......|... ++
T Consensus 125 G~~~W~~~~~~~~~~~p~v--~~~~v~v~~--------~~g~l~a~d~~-tG~~~W~~~~~~~~~~-~~~~~sp~~~-~~ 191 (377)
T TIGR03300 125 GKELWRAKLSSEVLSPPLV--ANGLVVVRT--------NDGRLTALDAA-TGERLWTYSRVTPALT-LRGSASPVIA-DG 191 (377)
T ss_pred CcEeeeeccCceeecCCEE--ECCEEEEEC--------CCCeEEEEEcC-CCceeeEEccCCCcee-ecCCCCCEEE-CC
Confidence 87642 2212222333443 344555433 23459999998 7876443322221100 0011233332 34
Q ss_pred cEEEEEecCCCceEEEEEEcCCCeEEEeeccCccc--cCCcccccC-cceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 310 ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEF--SRPLWVFGI-NSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 310 ~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~--~~~~w~~~~-~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
.+++.... ..++.+|+++|+..--....... ......... ..... .++.+|+.. .+| .|+.+|.+
T Consensus 192 ~v~~~~~~----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-----~~~~vy~~~-~~g--~l~a~d~~ 259 (377)
T TIGR03300 192 GVLVGFAG----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-----DGGQVYAVS-YQG--RVAALDLR 259 (377)
T ss_pred EEEEECCC----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-----ECCEEEEEE-cCC--EEEEEECC
Confidence 34433322 36888999888643211100000 000000000 00011 345566544 333 58888988
Q ss_pred CCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 387 GHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 387 ~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+|+..--.. ..........++.+++.. ....++.+|.++|+.
T Consensus 260 tG~~~W~~~-~~~~~~p~~~~~~vyv~~----~~G~l~~~d~~tG~~ 301 (377)
T TIGR03300 260 SGRVLWKRD-ASSYQGPAVDDNRLYVTD----ADGVVVALDRRSGSE 301 (377)
T ss_pred CCcEEEeec-cCCccCceEeCCEEEEEC----CCCeEEEEECCCCcE
Confidence 887431111 111222234456665543 235799999988863
No 337
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.67 E-value=0.0032 Score=65.97 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=39.8
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-CCeeeeeeeCCCCCeEEEEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG-SDFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~-~~~~~~~~~SPDG~~la~~~ 259 (729)
++.++|||||++|+.|+.+. -|-+++.++.+..-+... -+...-.+||||||+|+.-.
T Consensus 293 in~f~FS~DG~~LA~VSqDG---------fLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG 351 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDG---------FLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG 351 (636)
T ss_pred ccceeEcCCCceEEEEecCc---------eEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC
Confidence 46789999999999998753 577778876544333211 11223469999999987543
No 338
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.66 E-value=0.047 Score=60.09 Aligned_cols=201 Identities=11% Similarity=0.044 Sum_probs=118.1
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEE--ECCEEEEEECCCCcEE
Q 004816 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI--FGDTVIFSNYKDQRLY 168 (729)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~l~ 168 (729)
..++|.- ...+.++.. ..|...+|-.... +...+++. ++. |+.....+.+ ..-.|+++..+++-+-
T Consensus 91 ~DVkW~~~~~NlIAT~s---~nG~i~vWdlnk~--~rnk~l~~--f~E----H~Rs~~~ldfh~tep~iliSGSQDg~vK 159 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCS---TNGVISVWDLNKS--IRNKLLTV--FNE----HERSANKLDFHSTEPNILISGSQDGTVK 159 (839)
T ss_pred hhcccccchhhhheeec---CCCcEEEEecCcc--ccchhhhH--hhh----hccceeeeeeccCCccEEEecCCCceEE
Confidence 4566665 444545443 3566666655432 23334332 111 2222333333 3446888888899999
Q ss_pred EEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEeeeCCCeeeee
Q 004816 169 KHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVLVSGSDFYAFP 246 (729)
Q Consensus 169 ~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~lt~~~~~~~~~ 246 (729)
.||+.. ......... ....+.|++|||--...++...+. +.|-.+|+.--. .++++...+...-.
T Consensus 160 ~~DlR~--~~S~~t~~~---nSESiRDV~fsp~~~~~F~s~~ds--------G~lqlWDlRqp~r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 160 CWDLRS--KKSKSTFRS---NSESIRDVKFSPGYGNKFASIHDS--------GYLQLWDLRQPDRCEKKLTAHNGPVLCL 226 (839)
T ss_pred EEeeec--ccccccccc---cchhhhceeeccCCCceEEEecCC--------ceEEEeeccCchhHHHHhhcccCceEEE
Confidence 999986 555554443 135678999999444333333332 456677875322 34566666666667
Q ss_pred eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE
Q 004816 247 RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 325 (729)
Q Consensus 247 ~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~ 325 (729)
.|+|++.+||-.+ +. ..+.++|.. ++.......+... ..+..+.|-|+-+ .+.++.. -+...|+
T Consensus 227 nwhPnr~~lATGG--RD------K~vkiWd~t-~~~~~~~~tInTi-----apv~rVkWRP~~~~hLAtcsm-v~dtsV~ 291 (839)
T KOG0269|consen 227 NWHPNREWLATGG--RD------KMVKIWDMT-DSRAKPKHTINTI-----APVGRVKWRPARSYHLATCSM-VVDTSVH 291 (839)
T ss_pred eecCCCceeeecC--CC------ccEEEEecc-CCCccceeEEeec-----ceeeeeeeccCccchhhhhhc-cccceEE
Confidence 8999999988554 22 337777776 5554444333332 4567899999977 4434333 3667888
Q ss_pred EEEcCC
Q 004816 326 KWIESN 331 (729)
Q Consensus 326 ~~d~~~ 331 (729)
++|+.-
T Consensus 292 VWDvrR 297 (839)
T KOG0269|consen 292 VWDVRR 297 (839)
T ss_pred EEeecc
Confidence 888743
No 339
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.66 E-value=0.0061 Score=67.25 Aligned_cols=90 Identities=10% Similarity=0.040 Sum_probs=64.6
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.|.++|..+. .-+|.+-.. +.+.++++|||||++|+-.+-+ +.|.++|+.++.......-......
T Consensus 557 ~I~vvD~~t~-kvvR~f~gh----~nritd~~FS~DgrWlisasmD---------~tIr~wDlpt~~lID~~~vd~~~~s 622 (910)
T KOG1539|consen 557 SIRVVDVVTR-KVVREFWGH----GNRITDMTFSPDGRWLISASMD---------STIRTWDLPTGTLIDGLLVDSPCTS 622 (910)
T ss_pred eEEEEEchhh-hhhHHhhcc----ccceeeeEeCCCCcEEEEeecC---------CcEEEEeccCcceeeeEecCCccee
Confidence 6888888762 223444434 5789999999999998776553 5699999999876543333445567
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEE
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGY 276 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d 276 (729)
..+||.|.+||.+..+..+ ||++.
T Consensus 623 ls~SPngD~LAT~Hvd~~g-------IylWs 646 (910)
T KOG1539|consen 623 LSFSPNGDFLATVHVDQNG-------IYLWS 646 (910)
T ss_pred eEECCCCCEEEEEEecCce-------EEEEE
Confidence 8999999999988765533 66663
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.63 E-value=0.11 Score=51.41 Aligned_cols=200 Identities=19% Similarity=0.278 Sum_probs=99.1
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcE
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRL 167 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 167 (729)
+.++++.|.| .+.+|.+...+ + .|+.++.. |+...-.+-. + ...+-+-.+ ..++..+.++++.++|
T Consensus 22 ~e~SGLTy~pd~~tLfaV~d~~---~--~i~els~~--G~vlr~i~l~-g----~~D~EgI~y-~g~~~~vl~~Er~~~L 88 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQDEP---G--EIYELSLD--GKVLRRIPLD-G----FGDYEGITY-LGNGRYVLSEERDQRL 88 (248)
T ss_dssp S-EEEEEEETTTTEEEEEETTT---T--EEEEEETT----EEEEEE-S-S-----SSEEEEEE--STTEEEEEETTTTEE
T ss_pred CCccccEEcCCCCeEEEEECCC---C--EEEEEcCC--CCEEEEEeCC-C----CCCceeEEE-ECCCEEEEEEcCCCcE
Confidence 4588999999 78888887543 2 46667655 3322111111 0 011111112 2345777788788899
Q ss_pred EEEeCCCCCCC-----CeecCCC-CCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc--CCCceEEeee-
Q 004816 168 YKHSIDSKDSS-----PLPITPD-YGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL--NGQNIQVLVS- 238 (729)
Q Consensus 168 ~~~d~~~~~~~-----~~~lt~~-~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl--~~g~~~~lt~- 238 (729)
+.++++..+.. .++++-+ +......+-..+|+|.+++++.+.+..+ ..||.++. ..........
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-------~~l~~~~~~~~~~~~~~~~~~ 161 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-------KRLYEVNGFPGGFDLFVSDDQ 161 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-------EEEEEEESTT-SS--EEEE-H
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-------hhhEEEccccCccceeecccc
Confidence 99988431011 1222211 1011134677899999999888877653 56888886 2222222111
Q ss_pred -------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecC-CCC--CccccccCceeCCC
Q 004816 239 -------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAG-FDP--TIVESPTEPKWSSK 308 (729)
Q Consensus 239 -------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~-~~~--~~~~~~~~~~wspD 308 (729)
.....++..+.|....|+.++ ++. ..|..+|. +|++.....+.. ... ........+++.+|
T Consensus 162 ~~~~~~~~~~d~S~l~~~p~t~~lliLS-~es------~~l~~~d~--~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 162 DLDDDKLFVRDLSGLSYDPRTGHLLILS-DES------RLLLELDR--QGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp HHH-HT--SS---EEEEETTTTEEEEEE-TTT------TEEEEE-T--T--EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred ccccccceeccccceEEcCCCCeEEEEE-CCC------CeEEEECC--CCCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 112345678899888888887 443 34777774 466533333332 110 00012346789999
Q ss_pred CcEEEEEec
Q 004816 309 GELFFVTDR 317 (729)
Q Consensus 309 G~l~~~~~~ 317 (729)
|+||.++..
T Consensus 233 G~LYIvsEp 241 (248)
T PF06977_consen 233 GNLYIVSEP 241 (248)
T ss_dssp --EEEEETT
T ss_pred CCEEEEcCC
Confidence 988877754
No 341
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.63 E-value=0.12 Score=53.55 Aligned_cols=198 Identities=12% Similarity=0.091 Sum_probs=115.0
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCC-----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSS-----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~-----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
|..-....+.+...++.+.+||+.....+ ++.+... ....+.|.+|+|-.+.++....++ +.|.
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~---h~~~VeDV~~h~~h~~lF~sv~dd--------~~L~ 253 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSG---HEDVVEDVAWHPLHEDLFGSVGDD--------GKLM 253 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCccccceEEeec---CCcceehhhccccchhhheeecCC--------CeEE
Confidence 33333344556666778999998751011 1222222 135578999999888877766554 5788
Q ss_pred EEEcCCC--ceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 225 AIALNGQ--NIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 225 ~~dl~~g--~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
++|+.++ ++..... ........+|+|=+..|.-+... ..+|.++|+. +=. .....+.+.. ..+.
T Consensus 254 iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~-------D~tV~LwDlR-nL~-~~lh~~e~H~----dev~ 320 (422)
T KOG0264|consen 254 IWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSA-------DKTVALWDLR-NLN-KPLHTFEGHE----DEVF 320 (422)
T ss_pred EEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccC-------CCcEEEeech-hcc-cCceeccCCC----cceE
Confidence 9998853 3322222 23456678999977766555422 3458999987 332 2345566665 5678
Q ss_pred CceeCCCCc-EEEEEecCCCceEEEEEEcCCCeE----------EEeec---cCccccCCcccccCcceeeeeecCCCCE
Q 004816 302 EPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEV----------LAIYS---LDAEFSRPLWVFGINSYEIIQSHGEKNL 367 (729)
Q Consensus 302 ~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~----------~~l~~---~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 367 (729)
.+.|||+-. ++..+.. .+..++|-++--+.+. ..|.. ....+.+..|.| ..-.
T Consensus 321 ~V~WSPh~etvLASSg~-D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp------------~ePW 387 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGT-DRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNP------------NEPW 387 (422)
T ss_pred EEEeCCCCCceeEeccc-CCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCC------------CCCe
Confidence 899999987 6666554 4544454332222221 11211 111223334443 5567
Q ss_pred EEEEEEECCeEEEEEEE
Q 004816 368 IACSYRQNGRSYLGILD 384 (729)
Q Consensus 368 l~~~s~~~g~~~ly~~d 384 (729)
++.+..+++.-+||.+.
T Consensus 388 ~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 388 TIASVAEDNILQIWQMA 404 (422)
T ss_pred EEEEecCCceEEEeecc
Confidence 78888888888888764
No 342
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.62 E-value=0.1 Score=57.29 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=97.0
Q ss_pred cCCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 145 YGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 145 ~~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
|.|+.+.++.+ .++|... ...|-..|+.+ +... ++...........+..++||++.|+..... ..|
T Consensus 20 YtGG~~~~s~nG~~L~t~~-~d~Vi~idv~t--~~~~-l~s~~~ed~d~ita~~l~~d~~~L~~a~rs---------~ll 86 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTAC-GDRVIIIDVAT--GSIA-LPSGSNEDEDEITALALTPDEEVLVTASRS---------QLL 86 (775)
T ss_pred ecCCceeECCCCCEEEEec-CceEEEEEccC--Ccee-cccCCccchhhhheeeecCCccEEEEeecc---------ceE
Confidence 55555666633 5556542 33588888887 5442 554433334567888999999987766542 457
Q ss_pred EEEEcCCCceEEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 224 VAIALNGQNIQVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
-++++.+|+..+.-. +.......+++|-|..|+-.+ ....+-++|++ .+.. ...+.+.. +-+.
T Consensus 87 rv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtgg--------aD~~v~VWdi~-~~~~--th~fkG~g----GvVs 151 (775)
T KOG0319|consen 87 RVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGG--------ADGRVKVWDIK-NGYC--THSFKGHG----GVVS 151 (775)
T ss_pred EEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEecc--------ccceEEEEEee-CCEE--EEEecCCC----ceEE
Confidence 777888886544422 344555678999995555333 23448888888 5654 45667765 5556
Q ss_pred CceeCCCCc--EEEEEecCCCceEEEEEEcCCCeE
Q 004816 302 EPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 302 ~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
...|.|+-. +++.... ++ .+..+|..++..
T Consensus 152 sl~F~~~~~~~lL~sg~~-D~--~v~vwnl~~~~t 183 (775)
T KOG0319|consen 152 SLLFHPHWNRWLLASGAT-DG--TVRVWNLNDKRT 183 (775)
T ss_pred EEEeCCccchhheeecCC-Cc--eEEEEEcccCch
Confidence 677777754 3444333 34 455566655433
No 343
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.62 E-value=0.051 Score=58.89 Aligned_cols=156 Identities=13% Similarity=0.104 Sum_probs=94.4
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
+++++++.|++..-.+..||.+..+.. -+.+.+...+. .........|+-|+..++++..+. .+|..+++
T Consensus 389 aiSPdg~~Ia~st~~~~~iy~L~~~~~-vk~~~v~~~~~-~~~~a~~i~ftid~~k~~~~s~~~--------~~le~~el 458 (691)
T KOG2048|consen 389 AISPDGNLIAISTVSRTKIYRLQPDPN-VKVINVDDVPL-ALLDASAISFTIDKNKLFLVSKNI--------FSLEEFEL 458 (691)
T ss_pred ccCCCCCEEEEeeccceEEEEeccCcc-eeEEEeccchh-hhccceeeEEEecCceEEEEeccc--------ceeEEEEe
Confidence 455667788887655657777776531 11222222110 012335667899999988887333 56888888
Q ss_pred CCCceEEeee-----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 229 NGQNIQVLVS-----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 229 ~~g~~~~lt~-----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
++...+.+.. .-...+...-||||++||.++ ....|++++++ +++... +....+ ..+...
T Consensus 459 ~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~--------t~g~I~v~nl~-~~~~~~--l~~rln----~~vTa~ 523 (691)
T KOG2048|consen 459 ETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS--------TRGQIFVYNLE-TLESHL--LKVRLN----IDVTAA 523 (691)
T ss_pred cCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe--------ccceEEEEEcc-cceeec--chhccC----cceeee
Confidence 8765444422 123455678899999999888 23559999998 665422 222333 455667
Q ss_pred eeCCCCc--EEEEEecCCCceEEEEEEcCCCe
Q 004816 304 KWSSKGE--LFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 304 ~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
.++|..+ ++..... .++|.+|.+..+
T Consensus 524 ~~~~~~~~~lvvats~----nQv~efdi~~~~ 551 (691)
T KOG2048|consen 524 AFSPFVRNRLVVATSN----NQVFEFDIEARN 551 (691)
T ss_pred eccccccCcEEEEecC----CeEEEEecchhh
Confidence 7886654 5444333 568888874443
No 344
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=96.58 E-value=0.032 Score=60.53 Aligned_cols=122 Identities=12% Similarity=0.062 Sum_probs=70.9
Q ss_pred ceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 190 LVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 190 ~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
+..+...+.||+|+.|+-.+.....+ ...|++++..+= +...|....-..+...|||||++|+-++.|+.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~e----hAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt----- 595 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKE----HAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT----- 595 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCcc----ceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-----
Confidence 45667889999999776654433222 467888888763 33345544456678999999999998885542
Q ss_pred CcEEEEEEecCCCCee-eeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEE
Q 004816 269 KAELWVGYISENGDVY-KRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~-~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d 328 (729)
..||-. ..+-... +......+. .-+-.-.|+||++.++++.+ ...-.+|...
T Consensus 596 -~sl~~~--~~~~~~e~~fa~~k~Ht----RIIWdcsW~pde~~FaTaSR-DK~VkVW~~~ 648 (764)
T KOG1063|consen 596 -VSLYEV--QEDIKDEFRFACLKAHT----RIIWDCSWSPDEKYFATASR-DKKVKVWEEP 648 (764)
T ss_pred -EEeeee--ecccchhhhhccccccc----eEEEEcccCcccceeEEecC-CceEEEEecc
Confidence 224332 3111110 111122222 33445679999975445544 4445566543
No 345
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.57 E-value=0.17 Score=55.53 Aligned_cols=227 Identities=10% Similarity=0.014 Sum_probs=119.8
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCC--eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSP--LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI 233 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~--~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~ 233 (729)
.+++....++.+++||+.. +.. ..+..+ ...+....+++|+..++++..+. .++++|+..-+.
T Consensus 162 ~lL~sg~~D~~v~vwnl~~--~~tcl~~~~~H----~S~vtsL~~~~d~~~~ls~~RDk---------vi~vwd~~~~~~ 226 (775)
T KOG0319|consen 162 WLLASGATDGTVRVWNLND--KRTCLHTMILH----KSAVTSLAFSEDSLELLSVGRDK---------VIIVWDLVQYKK 226 (775)
T ss_pred hheeecCCCceEEEEEccc--CchHHHHHHhh----hhheeeeeeccCCceEEEeccCc---------EEEEeehhhhhh
Confidence 3556666678999999986 433 112222 23457788999999988886643 577788854332
Q ss_pred EEeeeCCCeeeeeeeCC---CCCe-EEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccC-ceeCCC
Q 004816 234 QVLVSGSDFYAFPRMDP---RGER-MAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTE-PKWSSK 308 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SP---DG~~-la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~-~~wspD 308 (729)
..+.+-.....+...-+ +|+. +.++. ... ..+..+|.+ ++.....+.-+..+ . +.+ ..-..+
T Consensus 227 l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta-G~~------g~~~~~d~e-s~~~~~~~~~~~~~----e-~~~~~~~~~~ 293 (775)
T KOG0319|consen 227 LKTLPLYESLESVVRLREELGGKGEYIITA-GGS------GVVQYWDSE-SGKCVYKQRQSDSE----E-IDHLLAIESM 293 (775)
T ss_pred hheechhhheeeEEEechhcCCcceEEEEe-cCC------ceEEEEecc-cchhhhhhccCCch----h-hhcceecccc
Confidence 22222222222233323 2331 23333 222 236667766 55532211111111 1 222 223345
Q ss_pred CcEEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCC
Q 004816 309 GELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFG 387 (729)
Q Consensus 309 G~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~ 387 (729)
++++.++.+ .+|+.+|.++.++. +|.....++. ++.|+.+ +.+.++ .+...+.-++| +..+
T Consensus 294 ~~~l~vtae----Qnl~l~d~~~l~i~k~ivG~ndEI~---------Dm~~lG~--e~~~la-VATNs~~lr~y--~~~~ 355 (775)
T KOG0319|consen 294 SQLLLVTAE----QNLFLYDEDELTIVKQIVGYNDEIL---------DMKFLGP--EESHLA-VATNSPELRLY--TLPT 355 (775)
T ss_pred CceEEEEcc----ceEEEEEccccEEehhhcCCchhhe---------eeeecCC--ccceEE-EEeCCCceEEE--ecCC
Confidence 555555544 56888888776644 3333222332 3334421 334444 44445666666 6666
Q ss_pred CceEeeccCCcceEEee-eeCCEEEEEEeCCCCCceEEEEEcC
Q 004816 388 HSLSLLDIPFTDIDNIT-LGNDCLFVEGASGVEPSSVAKVTLD 429 (729)
Q Consensus 388 g~~~~lt~~~~~v~~~~-~~~~~~~~~~~~~~~~~~ly~~d~~ 429 (729)
-.-..+......+-++. .+.+ .++.+.+.+..-.+|+++-+
T Consensus 356 ~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~ 397 (775)
T KOG0319|consen 356 SYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNN 397 (775)
T ss_pred CceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCC
Confidence 66565555566677774 3333 66667777777789998533
No 346
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=96.56 E-value=0.0043 Score=41.87 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=24.4
Q ss_pred eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 180 LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 180 ~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
+++|.. ......+.|||||++|+|++..... ...+||+
T Consensus 2 ~~~t~~----~~~~~~p~~SpDGk~i~f~s~~~~~----g~~diy~ 39 (39)
T PF07676_consen 2 KQLTNS----PGDDGSPAWSPDGKYIYFTSNRNDR----GSFDIYV 39 (39)
T ss_dssp EEES-S----SSSEEEEEE-TTSSEEEEEEECT------SSEEEEE
T ss_pred cCcccC----CccccCEEEecCCCEEEEEecCCCC----CCcCEEC
Confidence 456665 2345788999999999999876621 1356774
No 347
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=96.49 E-value=0.17 Score=49.82 Aligned_cols=120 Identities=16% Similarity=0.057 Sum_probs=69.5
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+....|+|||..++-...+ .+|++++..+-. .-.+....+...+..|.+||+.|+-.+.
T Consensus 48 geI~~~~F~P~gs~~aSgG~D---------r~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt-------- 110 (338)
T KOG0265|consen 48 GEIYTIKFHPDGSCFASGGSD---------RAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT-------- 110 (338)
T ss_pred ceEEEEEECCCCCeEeecCCc---------ceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC--------
Confidence 456777899999975543322 468888866432 2234444556678899999999876662
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEe
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l 337 (729)
...++.+|++ +|+. .+...+.. .-+..+.-+.-|- ++....+ .+...| +|..+.+...+
T Consensus 111 Dk~v~~wD~~-tG~~--~rk~k~h~----~~vNs~~p~rrg~~lv~Sgsd-D~t~kl--~D~R~k~~~~t 170 (338)
T KOG0265|consen 111 DKTVRGWDAE-TGKR--IRKHKGHT----SFVNSLDPSRRGPQLVCSGSD-DGTLKL--WDIRKKEAIKT 170 (338)
T ss_pred CceEEEEecc-ccee--eehhcccc----ceeeecCccccCCeEEEecCC-CceEEE--Eeecccchhhc
Confidence 3559999998 7765 33333332 2222233222344 4444444 454444 56655443333
No 348
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.48 E-value=0.79 Score=48.16 Aligned_cols=147 Identities=10% Similarity=0.054 Sum_probs=90.3
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCC-CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDS-SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~-~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
+++++..-+..|.+-++|..+ . ..+++-.. ...+.-..|+|+++.++...+++ ..+-.+|+++..
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~--r~iLR~~~ah----~apv~~~~f~~~d~t~l~s~sDd--------~v~k~~d~s~a~ 144 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKS--RVILRQLYAH----QAPVHVTKFSPQDNTMLVSGSDD--------KVVKYWDLSTAY 144 (487)
T ss_pred CCeEEEccCCcCcEEEecccc--HHHHHHHhhc----cCceeEEEecccCCeEEEecCCC--------ceEEEEEcCCcE
Confidence 557777777788999999653 2 23344333 23445567999998876666554 234455777666
Q ss_pred eE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcE
Q 004816 233 IQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGEL 311 (729)
Q Consensus 233 ~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l 311 (729)
+. .|....+....-.|+|-...|+++..-+ ..|.++|+. ..+ .+. ..-+.+ ..+..+.+-|.|.+
T Consensus 145 v~~~l~~htDYVR~g~~~~~~~hivvtGsYD-------g~vrl~DtR-~~~-~~v-~elnhg----~pVe~vl~lpsgs~ 210 (487)
T KOG0310|consen 145 VQAELSGHTDYVRCGDISPANDHIVVTGSYD-------GKVRLWDTR-SLT-SRV-VELNHG----CPVESVLALPSGSL 210 (487)
T ss_pred EEEEecCCcceeEeeccccCCCeEEEecCCC-------ceEEEEEec-cCC-cee-EEecCC----CceeeEEEcCCCCE
Confidence 52 2334455666678999888898877322 337777766 332 122 222232 45567888898875
Q ss_pred EEEEecCCCceEEEEEEcCCC
Q 004816 312 FFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 312 ~~~~~~~~g~~~l~~~d~~~g 332 (729)
+..+ |...+-+||+.+|
T Consensus 211 iasA----gGn~vkVWDl~~G 227 (487)
T KOG0310|consen 211 IASA----GGNSVKVWDLTTG 227 (487)
T ss_pred EEEc----CCCeEEEEEecCC
Confidence 5553 3356677788754
No 349
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.45 E-value=0.13 Score=50.84 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=78.2
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 317 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~ 317 (729)
..+..+..+||.|||+||-+..| ..|.++++. +=+.+..+.+...-+- .....++|+||-+ +++...+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~D--------r~Ir~w~~~-DF~~~eHr~~R~nve~--dhpT~V~FapDc~s~vv~~~~ 153 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGD--------RSIRLWDVR-DFENKEHRCIRQNVEY--DHPTRVVFAPDCKSVVVSVKR 153 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCC--------ceEEEEecc-hhhhhhhhHhhccccC--CCceEEEECCCcceEEEEEcc
Confidence 34566788999999999988833 337777776 3222222222111100 2346789999998 6665554
Q ss_pred CCCceEEEEEEcCC-Ce-EEEeeccC-ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 318 KNGFWNLHKWIESN-NE-VLAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 318 ~~g~~~l~~~d~~~-g~-~~~l~~~~-~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
.....+|.++-.+ |. ....+..+ -++.... ....-++... ++..++.+...+. .|.+++++|+.+..+.
T Consensus 154 -g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh-~v~~i~iGiA----~~~k~imsas~dt--~i~lw~lkGq~L~~id 225 (420)
T KOG2096|consen 154 -GNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKH-QVDIINIGIA----GNAKYIMSASLDT--KICLWDLKGQLLQSID 225 (420)
T ss_pred -CCEEEEEEeeecccCCCCcccccccccccchhc-ccceEEEeec----CCceEEEEecCCC--cEEEEecCCceeeeec
Confidence 4445555554322 11 11111111 0111100 1111123332 4555555554444 4555577777777776
Q ss_pred cCCcc-eEEeeeeCCEEEEEEe
Q 004816 395 IPFTD-IDNITLGNDCLFVEGA 415 (729)
Q Consensus 395 ~~~~~-v~~~~~~~~~~~~~~~ 415 (729)
+.... .....+++++++..++
T Consensus 226 tnq~~n~~aavSP~GRFia~~g 247 (420)
T KOG2096|consen 226 TNQSSNYDAAVSPDGRFIAVSG 247 (420)
T ss_pred cccccccceeeCCCCcEEEEec
Confidence 55433 2233445556655443
No 350
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=96.44 E-value=0.56 Score=46.41 Aligned_cols=189 Identities=13% Similarity=0.006 Sum_probs=96.1
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
+++.+++. ..++.|+.+|..+ |+.. +.... ..+... -..++..|++...+ ..|+.+|..+|
T Consensus 35 ~~~~v~~~-~~~~~l~~~d~~t--G~~~W~~~~~-----~~~~~~-~~~~~~~v~v~~~~---------~~l~~~d~~tG 96 (238)
T PF13360_consen 35 DGGRVYVA-SGDGNLYALDAKT--GKVLWRFDLP-----GPISGA-PVVDGGRVYVGTSD---------GSLYALDAKTG 96 (238)
T ss_dssp ETTEEEEE-ETTSEEEEEETTT--SEEEEEEECS-----SCGGSG-EEEETTEEEEEETT---------SEEEEEETTTS
T ss_pred eCCEEEEE-cCCCEEEEEECCC--CCEEEEeecc-----ccccce-eeecccccccccce---------eeeEecccCCc
Confidence 55555444 4677899999877 5432 22221 011111 13356666555421 47999998888
Q ss_pred ceEEe-eeCC----CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc-----ccc
Q 004816 232 NIQVL-VSGS----DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE-----SPT 301 (729)
Q Consensus 232 ~~~~l-t~~~----~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~-----~~~ 301 (729)
++.-- .... .....+....+|+.+++.. ....|+.+|++ +|+..+............. ...
T Consensus 97 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~g~l~~~d~~-tG~~~w~~~~~~~~~~~~~~~~~~~~~ 167 (238)
T PF13360_consen 97 KVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT--------SSGKLVALDPK-TGKLLWKYPVGEPRGSSPISSFSDING 167 (238)
T ss_dssp CEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE--------TCSEEEEEETT-TTEEEEEEESSTT-SS--EEEETTEEE
T ss_pred ceeeeeccccccccccccccCceEecCEEEEEe--------ccCcEEEEecC-CCcEEEEeecCCCCCCcceeeeccccc
Confidence 76422 2211 1222334444577776655 23569999998 8886554444221100000 012
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
.+... +|.++ .... .+. +..+|..+|+..- ......... .+.. +++.+|+.. .+ .+|+
T Consensus 168 ~~~~~-~~~v~-~~~~-~g~--~~~~d~~tg~~~w-~~~~~~~~~----------~~~~---~~~~l~~~~-~~--~~l~ 225 (238)
T PF13360_consen 168 SPVIS-DGRVY-VSSG-DGR--VVAVDLATGEKLW-SKPISGIYS----------LPSV---DGGTLYVTS-SD--GRLY 225 (238)
T ss_dssp EEECC-TTEEE-EECC-TSS--EEEEETTTTEEEE-EECSS-ECE----------CEEC---CCTEEEEEE-TT--TEEE
T ss_pred ceEEE-CCEEE-EEcC-CCe--EEEEECCCCCEEE-EecCCCccC----------Ccee---eCCEEEEEe-CC--CEEE
Confidence 23332 44444 4433 232 6666998887442 211111000 0111 667777666 44 4788
Q ss_pred EEECCCCce
Q 004816 382 ILDDFGHSL 390 (729)
Q Consensus 382 ~~d~~~g~~ 390 (729)
.+|+.+|+.
T Consensus 226 ~~d~~tG~~ 234 (238)
T PF13360_consen 226 ALDLKTGKV 234 (238)
T ss_dssp EEETTTTEE
T ss_pred EEECCCCCE
Confidence 899999875
No 351
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.43 E-value=0.12 Score=57.65 Aligned_cols=200 Identities=8% Similarity=-0.019 Sum_probs=108.6
Q ss_pred CCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 146 GGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 146 ~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+..++|+.+..++++.-+..+-+|++.. .+.-.+-.+ ...+..++|.|-..+ +|++..-. +.+-+
T Consensus 371 DILDlSWSKn~fLLSSSMDKTVRLWh~~~--~~CL~~F~H----ndfVTcVaFnPvDDr-yFiSGSLD-------~KvRi 436 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDKTVRLWHPGR--KECLKVFSH----NDFVTCVAFNPVDDR-YFISGSLD-------GKVRL 436 (712)
T ss_pred hheecccccCCeeEeccccccEEeecCCC--cceeeEEec----CCeeEEEEecccCCC-cEeecccc-------cceEE
Confidence 45567888888888888888788888875 554444444 355688889995444 45543321 33555
Q ss_pred EEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeee---eEEecCCCCCccccccC
Q 004816 226 IALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYK---RVCVAGFDPTIVESPTE 302 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~---~~~~~~~~~~~~~~~~~ 302 (729)
+++...++..-+.-.+.++..+++|||+..+.-.. ....+.|+.. +-++.. +.+-...... ..-+.+
T Consensus 437 WsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~--------~G~C~fY~t~-~lk~~~~~~I~~~~~Kk~~-~~rITG 506 (712)
T KOG0283|consen 437 WSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTF--------NGYCRFYDTE-GLKLVSDFHIRLHNKKKKQ-GKRITG 506 (712)
T ss_pred eecCcCeeEeehhhhhhheeEEeccCCceEEEEEe--------ccEEEEEEcc-CCeEEEeeeEeeccCcccc-Cceeee
Confidence 56655555444444566788999999997654442 2234555544 222211 1111111100 023455
Q ss_pred ceeCCCC--cEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 303 PKWSSKG--ELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 303 ~~wspDG--~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
+++.|-. ++++++++ .+|-++|..+.++.....+....... ..-.|.. ||++|+..+ ++....|
T Consensus 507 ~Q~~p~~~~~vLVTSnD----SrIRI~d~~~~~lv~KfKG~~n~~SQ------~~Asfs~---Dgk~IVs~s-eDs~VYi 572 (712)
T KOG0283|consen 507 LQFFPGDPDEVLVTSND----SRIRIYDGRDKDLVHKFKGFRNTSSQ------ISASFSS---DGKHIVSAS-EDSWVYI 572 (712)
T ss_pred eEecCCCCCeEEEecCC----CceEEEeccchhhhhhhcccccCCcc------eeeeEcc---CCCEEEEee-cCceEEE
Confidence 6666532 37777766 45666676444333222222111111 1113332 888888877 5555556
Q ss_pred EEE
Q 004816 381 GIL 383 (729)
Q Consensus 381 y~~ 383 (729)
|.+
T Consensus 573 W~~ 575 (712)
T KOG0283|consen 573 WKN 575 (712)
T ss_pred EeC
Confidence 654
No 352
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.41 E-value=1.7 Score=46.83 Aligned_cols=182 Identities=10% Similarity=0.030 Sum_probs=88.1
Q ss_pred eEEEEEEcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
..|+.+|.++|+..= ..........|... | .+|++.. ....|+.+|.+ +|+..+.......... ...
T Consensus 130 g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~-~~v~v~~--------~~g~l~ald~~-tG~~~W~~~~~~~~~~-~~~ 197 (394)
T PRK11138 130 GQVYALNAEDGEVAWQTKVAGEALSRPVVS-D-GLVLVHT--------SNGMLQALNES-DGAVKWTVNLDVPSLT-LRG 197 (394)
T ss_pred CEEEEEECCCCCCcccccCCCceecCCEEE-C-CEEEEEC--------CCCEEEEEEcc-CCCEeeeecCCCCccc-ccC
Confidence 579999999887532 21122233445543 3 3455433 23459999998 8886554332211100 001
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCC---cccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRP---LWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~---~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
...|... +|.+++... ...++.+|+++|+..--.......... ........-.. .++.+|+.+. +|
T Consensus 198 ~~sP~v~-~~~v~~~~~----~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v-----~~~~vy~~~~-~g 266 (394)
T PRK11138 198 ESAPATA-FGGAIVGGD----NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVV-----VGGVVYALAY-NG 266 (394)
T ss_pred CCCCEEE-CCEEEEEcC----CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEE-----ECCEEEEEEc-CC
Confidence 1334432 343444332 245788888888643211100000000 00000000011 3456666543 33
Q ss_pred eEEEEEEECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 377 RSYLGILDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 377 ~~~ly~~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.|+.+|..+|+.. -.........+...++.+++... ...++.+|.++|+
T Consensus 267 --~l~ald~~tG~~~-W~~~~~~~~~~~~~~~~vy~~~~----~g~l~ald~~tG~ 315 (394)
T PRK11138 267 --NLVALDLRSGQIV-WKREYGSVNDFAVDGGRIYLVDQ----NDRVYALDTRGGV 315 (394)
T ss_pred --eEEEEECCCCCEE-EeecCCCccCcEEECCEEEEEcC----CCeEEEEECCCCc
Confidence 6899999888743 11111122223445666665442 2579999998886
No 353
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.40 E-value=1.9 Score=46.62 Aligned_cols=227 Identities=11% Similarity=0.058 Sum_probs=111.4
Q ss_pred EEECCEEEEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
..+++.+++. ..++.|+.+|.++ |+. .+.... ......|.+. +..|++. .. ...|+.+|++
T Consensus 117 ~v~~~~v~v~-~~~g~l~ald~~t--G~~~W~~~~~----~~~~ssP~v~--~~~v~v~-~~--------~g~l~ald~~ 178 (394)
T PRK11138 117 TVAGGKVYIG-SEKGQVYALNAED--GEVAWQTKVA----GEALSRPVVS--DGLVLVH-TS--------NGMLQALNES 178 (394)
T ss_pred EEECCEEEEE-cCCCEEEEEECCC--CCCcccccCC----CceecCCEEE--CCEEEEE-CC--------CCEEEEEEcc
Confidence 4456666554 4567899999987 543 222211 1122334443 3444433 22 2579999999
Q ss_pred CCceE-EeeeC-CC----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc-----cc
Q 004816 230 GQNIQ-VLVSG-SD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI-----VE 298 (729)
Q Consensus 230 ~g~~~-~lt~~-~~----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~-----~~ 298 (729)
+|+.. +.... .. ....|... +..+++.. ....++.+|.+ +|+..+........... ..
T Consensus 179 tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~--------~~g~v~a~d~~-~G~~~W~~~~~~~~~~~~~~~~~~ 247 (394)
T PRK11138 179 DGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGG--------DNGRVSAVLME-QGQLIWQQRISQPTGATEIDRLVD 247 (394)
T ss_pred CCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEc--------CCCEEEEEEcc-CChhhheeccccCCCccchhcccc
Confidence 98764 22211 11 11234432 23454433 23458888888 77754432221110000 00
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
....|... |+.+|+.... ..|+.+|+.+|+..--... ..+ ..... .++.+|+... + .
T Consensus 248 ~~~sP~v~-~~~vy~~~~~----g~l~ald~~tG~~~W~~~~----~~~------~~~~~-----~~~~vy~~~~-~--g 304 (394)
T PRK11138 248 VDTTPVVV-GGVVYALAYN----GNLVALDLRSGQIVWKREY----GSV------NDFAV-----DGGRIYLVDQ-N--D 304 (394)
T ss_pred cCCCcEEE-CCEEEEEEcC----CeEEEEECCCCCEEEeecC----CCc------cCcEE-----ECCEEEEEcC-C--C
Confidence 01233332 4545554433 3689999998864321111 110 01111 5567777653 3 3
Q ss_pred EEEEEECCCCceEe-ecc-CCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 379 YLGILDDFGHSLSL-LDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 379 ~ly~~d~~~g~~~~-lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
+|+.++.++|+..= ... ...........++.+++ .+. ...++.+|.++|+.
T Consensus 305 ~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v-~~~---~G~l~~ld~~tG~~ 357 (394)
T PRK11138 305 RVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVV-GDS---EGYLHWINREDGRF 357 (394)
T ss_pred eEEEEECCCCcEEEcccccCCCcccCCEEECCEEEE-EeC---CCEEEEEECCCCCE
Confidence 68999998886421 111 11112222233555544 332 24788999888874
No 354
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=96.39 E-value=0.28 Score=50.89 Aligned_cols=195 Identities=11% Similarity=0.075 Sum_probs=109.9
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCe---------ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPL---------PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~---------~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
.|+-+....+++|++|.....+.+. +|.... ..-.+.+|++.-..-.....++ +.++++
T Consensus 138 ~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~----~eg~glsWn~~~~g~Lls~~~d--------~~i~lw 205 (422)
T KOG0264|consen 138 NIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHE----KEGYGLSWNRQQEGTLLSGSDD--------HTICLW 205 (422)
T ss_pred cEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeec----ccccccccccccceeEeeccCC--------CcEEEE
Confidence 4666655667899999864101121 222221 1123467888555433333322 457777
Q ss_pred EcCCCc-------eEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccc
Q 004816 227 ALNGQN-------IQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVE 298 (729)
Q Consensus 227 dl~~g~-------~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~ 298 (729)
|+.... ++.+.. ..+.....+|.|--+.|+ .+.. +...|.+.|+. .++........... .
T Consensus 206 di~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF-~sv~------dd~~L~iwD~R-~~~~~~~~~~~ah~----~ 273 (422)
T KOG0264|consen 206 DINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLF-GSVG------DDGKLMIWDTR-SNTSKPSHSVKAHS----A 273 (422)
T ss_pred eccccccCCccccceEEeecCCcceehhhccccchhhh-eeec------CCCeEEEEEcC-CCCCCCcccccccC----C
Confidence 776522 122223 334566789999655553 3322 24559999987 33322233444444 4
Q ss_pred cccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEE--eeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC
Q 004816 299 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA--IYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 375 (729)
Q Consensus 299 ~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~--l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~ 375 (729)
.+..++|+|=+. |+.+... . ..|.++|+..-.... +.....++....|+| ....++.++..+
T Consensus 274 ~vn~~~fnp~~~~ilAT~S~-D--~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSP------------h~etvLASSg~D 338 (422)
T KOG0264|consen 274 EVNCVAFNPFNEFILATGSA-D--KTVALWDLRNLNKPLHTFEGHEDEVFQVEWSP------------HNETVLASSGTD 338 (422)
T ss_pred ceeEEEeCCCCCceEEeccC-C--CcEEEeechhcccCceeccCCCcceEEEEeCC------------CCCceeEecccC
Confidence 566788999777 5555443 3 346666775533322 223344555667777 667788888889
Q ss_pred CeEEEEEEECCCCc
Q 004816 376 GRSYLGILDDFGHS 389 (729)
Q Consensus 376 g~~~ly~~d~~~g~ 389 (729)
++..+|-++--+++
T Consensus 339 ~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEE 352 (422)
T ss_pred CcEEEEeccccccc
Confidence 99888877654444
No 355
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.36 E-value=0.31 Score=48.47 Aligned_cols=130 Identities=12% Similarity=0.021 Sum_probs=68.7
Q ss_pred EEEEEcCCCceEEeeeCC---C---eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee--EEecCCCC
Q 004816 223 IVAIALNGQNIQVLVSGS---D---FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR--VCVAGFDP 294 (729)
Q Consensus 223 l~~~dl~~g~~~~lt~~~---~---~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~--~~~~~~~~ 294 (729)
|.++|.-+|+.+.-...- + .....+|||||.+|+ .. .+..|.++|+...|..-++ ++..+..
T Consensus 135 Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf-aG--------ykrcirvFdt~RpGr~c~vy~t~~~~k~- 204 (406)
T KOG2919|consen 135 IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF-AG--------YKRCIRVFDTSRPGRDCPVYTTVTKGKF- 204 (406)
T ss_pred eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe-ec--------ccceEEEeeccCCCCCCcchhhhhcccc-
Confidence 667787777766433221 1 123579999999985 55 2445899998644542222 2222221
Q ss_pred CccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEE
Q 004816 295 TIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 295 ~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
....-++..+++|-.. .+..... .....||.. .++.+-.+. ...+.++...|.+ ++++||.-+
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY-~q~~giy~~--~~~~pl~llggh~gGvThL~~~e------------dGn~lfsGa 269 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSY-GQRVGIYND--DGRRPLQLLGGHGGGVTHLQWCE------------DGNKLFSGA 269 (406)
T ss_pred cccceeeeeeccCCCCcceeeecc-cceeeeEec--CCCCceeeecccCCCeeeEEecc------------CcCeecccc
Confidence 1113345677888543 3333322 223445543 344444444 3445556666665 677776655
Q ss_pred EECCe
Q 004816 373 RQNGR 377 (729)
Q Consensus 373 ~~~g~ 377 (729)
..+..
T Consensus 270 Rk~dk 274 (406)
T KOG2919|consen 270 RKDDK 274 (406)
T ss_pred cCCCe
Confidence 54443
No 356
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.32 E-value=0.49 Score=50.48 Aligned_cols=197 Identities=12% Similarity=0.047 Sum_probs=106.9
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE---eeeCCCeeeeeeeCCCCCeEEEEEecCCCCC---
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV---LVSGSDFYAFPRMDPRGERMAWIEWHHPNMP--- 266 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~---lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~--- 266 (729)
+.++.|||-+.-|+|-.......| ..+-++.+-+++..+ |..- .....-|-..|++|+|--..+....
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~p----arvtL~evPs~~~iRt~nlfnV--sDckLhWQk~gdyLcvkvdR~tK~~~~g 422 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIP----ARVTLMEVPSKREIRTKNLFNV--SDCKLHWQKSGDYLCVKVDRHTKSKVKG 422 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCc----ceEEEEecCccceeeeccceee--eccEEEeccCCcEEEEEEEeeccccccc
Confidence 478999999999999865544332 455666665554322 2221 1234579999999998764443221
Q ss_pred -CCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec-CCCceEEEEEEcCCCeEEEeeccC-c
Q 004816 267 -WDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR-KNGFWNLHKWIESNNEVLAIYSLD-A 342 (729)
Q Consensus 267 -~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~-~~g~~~l~~~d~~~g~~~~l~~~~-~ 342 (729)
+.+.+|+.++-. . .++....-. ..+-..+|-|.|. +..++.. ....-..|.+....++.+.+...+ .
T Consensus 423 ~f~n~eIfrireK---d-Ipve~velk-----e~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~ 493 (698)
T KOG2314|consen 423 QFSNLEIFRIREK---D-IPVEVVELK-----ESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK 493 (698)
T ss_pred eEeeEEEEEeecc---C-CCceeeecc-----hheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc
Confidence 122344444322 1 122222221 3456788999998 6665544 122344555554445554443222 2
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCc-ceEEe-eeeCCEEEEEEeC
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFT-DIDNI-TLGNDCLFVEGAS 416 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~-~v~~~-~~~~~~~~~~~~~ 416 (729)
......|+| .|+.+++..-......|+.+|++-...+....+.. ....+ .++.+++++.+++
T Consensus 494 ~~N~vfwsP------------kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss 557 (698)
T KOG2314|consen 494 FANTVFWSP------------KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSS 557 (698)
T ss_pred ccceEEEcC------------CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeee
Confidence 223345555 77777666655556678888887544444433321 22333 4555666655553
No 357
>PRK13613 lipoprotein LpqB; Provisional
Probab=96.30 E-value=0.52 Score=53.12 Aligned_cols=164 Identities=11% Similarity=0.188 Sum_probs=92.7
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-----EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-----QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMP 266 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-----~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~ 266 (729)
....++.|+||+.++++..+. ..||+-++.++.. +.+..+ .....|.|.++| +| |+. +...
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~--------~~l~vg~~~~~~~~~~~~~~~~~~-~~Lt~PS~d~~g-~v-Wtv-d~~~-- 429 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADG--------DSVYVGSLTPGASIGVHSWGVTAD-GRLTSPSWDGRG-DL-WVV-DRDP-- 429 (599)
T ss_pred CccceEEcCCCceEEEEcCCC--------cEEEEeccCCCCccccccceeecc-CcccCCcCcCCC-CE-EEe-cCCC--
Confidence 456788999999999885422 4677766544332 334443 346789999998 45 443 2211
Q ss_pred CCCcE-EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE--EEEc-CCCeEEEee---
Q 004816 267 WDKAE-LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIE-SNNEVLAIY--- 338 (729)
Q Consensus 267 ~~~~~-l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~--~~d~-~~g~~~~l~--- 338 (729)
...+ |.++. . +|+...+.. .... + ..+..++.|+||- ++++... .+..+|+ .+-- ..|+ +.|+
T Consensus 430 -~~~~vl~v~~-~-~G~~~~V~~-~~l~-g--~~I~~lrvSrDG~RvAvv~~~-~g~~~v~va~V~R~~~G~-~~l~~~~ 500 (599)
T PRK13613 430 -ADPRLLWLLQ-G-DGEPVEVRT-PELD-G--HRVVAVRVARDGVRVALIVEK-DGRRSLQIGRIVRDAKAV-VSVEEFR 500 (599)
T ss_pred -CCceEEEEEc-C-CCcEEEeec-cccC-C--CEeEEEEECCCccEEEEEEec-CCCcEEEEEEEEeCCCCc-EEeeccE
Confidence 1223 44544 2 455433222 1221 1 2578889999998 7777665 4444443 3333 3344 4443
Q ss_pred ---ccCccccCCcccccCcceeeeeecCCCCEEEEEE-EECCeEEEEEEECCCCceE
Q 004816 339 ---SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 339 ---~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s-~~~g~~~ly~~d~~~g~~~ 391 (729)
.......+..|. ++..|++.. ...+...+|++++++....
T Consensus 501 ~l~~~l~~v~~~~W~-------------~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~ 544 (599)
T PRK13613 501 SLAPELEDVTDMSWA-------------GDSQLVVLGREEGGVQQARYVQVDGSTPP 544 (599)
T ss_pred EeccCCCccceeEEc-------------CCCEEEEEeccCCCCcceEEEecCCcCcc
Confidence 122223344454 555666643 4455778999999876654
No 358
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.30 E-value=2 Score=45.98 Aligned_cols=227 Identities=11% Similarity=0.040 Sum_probs=108.7
Q ss_pred EEECCEEEEEECCCCcEEEEeCCCCCCCCe-ecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 151 RIFGDTVIFSNYKDQRLYKHSIDSKDSSPL-PITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 151 ~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~-~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
..+++.++ ....++.||.+|.++ |+.. +.... ......+.. ++..+++... ...|+.+|++
T Consensus 102 ~v~~~~v~-v~~~~g~l~ald~~t--G~~~W~~~~~----~~~~~~p~v--~~~~v~v~~~---------~g~l~a~d~~ 163 (377)
T TIGR03300 102 GADGGLVF-VGTEKGEVIALDAED--GKELWRAKLS----SEVLSPPLV--ANGLVVVRTN---------DGRLTALDAA 163 (377)
T ss_pred EEcCCEEE-EEcCCCEEEEEECCC--CcEeeeeccC----ceeecCCEE--ECCEEEEECC---------CCeEEEEEcC
Confidence 34455554 444577899999977 5432 22221 111223333 3444444322 2569999998
Q ss_pred CCceEE-eeeCCC-----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCC----c-cc
Q 004816 230 GQNIQV-LVSGSD-----FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT----I-VE 298 (729)
Q Consensus 230 ~g~~~~-lt~~~~-----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~----~-~~ 298 (729)
+|+..- ...... ....|... + ..++ ... ....++.+|+. +|+..+.......... . ..
T Consensus 164 tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~-~~~-------~~g~v~ald~~-tG~~~W~~~~~~~~g~~~~~~~~~ 232 (377)
T TIGR03300 164 TGERLWTYSRVTPALTLRGSASPVIA-D-GGVL-VGF-------AGGKLVALDLQ-TGQPLWEQRVALPKGRTELERLVD 232 (377)
T ss_pred CCceeeEEccCCCceeecCCCCCEEE-C-CEEE-EEC-------CCCEEEEEEcc-CCCEeeeeccccCCCCCchhhhhc
Confidence 887532 211111 11223332 3 3444 332 22458999988 7875443222111000 0 00
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
....|.. .++.+++.... ..|+.+|+++|+..--... .. +. .... .++.+|+.+ ...
T Consensus 233 ~~~~p~~-~~~~vy~~~~~----g~l~a~d~~tG~~~W~~~~-~~-----~~----~p~~-----~~~~vyv~~---~~G 289 (377)
T TIGR03300 233 VDGDPVV-DGGQVYAVSYQ----GRVAALDLRSGRVLWKRDA-SS-----YQ----GPAV-----DDNRLYVTD---ADG 289 (377)
T ss_pred cCCccEE-ECCEEEEEEcC----CEEEEEECCCCcEEEeecc-CC-----cc----CceE-----eCCEEEEEC---CCC
Confidence 0122333 23435544433 3588899988865432211 01 11 1111 456777664 234
Q ss_pred EEEEEECCCCceE-eecc-CCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcc
Q 004816 379 YLGILDDFGHSLS-LLDI-PFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHKL 433 (729)
Q Consensus 379 ~ly~~d~~~g~~~-~lt~-~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~ 433 (729)
.|+.+|.++|+.. .... ...........++.+++ .+. ...+|.+|.++|+.
T Consensus 290 ~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~-~~~---~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 290 VVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVV-GDF---EGYLHWLSREDGSF 342 (377)
T ss_pred eEEEEECCCCcEEEccccccCCccccCEEECCEEEE-EeC---CCEEEEEECCCCCE
Confidence 6888898888643 2211 11111222234554443 332 24799999888864
No 359
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=96.28 E-value=0.2 Score=48.91 Aligned_cols=225 Identities=13% Similarity=0.089 Sum_probs=112.5
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEecc-CCCCCCcceEEEEEEcCCCc-----eEE---
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDR-RQDALNSTTEIVAIALNGQN-----IQV--- 235 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~-~~~~~~~~~~l~~~dl~~g~-----~~~--- 235 (729)
.++.++.++. +..+.+...-.-+...+.+.+-||-.++|+.+.-+. .+...-....||.++-.-+. ...
T Consensus 40 NqVhll~~d~--e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 40 NQVHLLRLDS--EGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred ceeEEEEecC--ccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 5677777664 222222211001134567888899787777766543 22211123457776544332 111
Q ss_pred ee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC--CCcEE
Q 004816 236 LV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS--KGELF 312 (729)
Q Consensus 236 lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp--DG~l~ 312 (729)
|. ..-+...-..|-|++.+|+-.. + ..|.+++++.+.+.....+..+.. ........-.||| ||.-+
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~--d-------n~i~l~~l~ess~~vaev~ss~s~-e~~~~ftsg~WspHHdgnqv 187 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD--D-------NNIVLWSLDESSKIVAEVLSSESA-EMRHSFTSGAWSPHHDGNQV 187 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec--c-------CceEEEEcccCcchheeecccccc-cccceecccccCCCCccceE
Confidence 11 1223456678999999998665 2 237777877333322112222211 0114566778999 77633
Q ss_pred EEEecCCCceEEEEEEcCCCeE-EEeeccC-ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 313 FVTDRKNGFWNLHKWIESNNEV-LAIYSLD-AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 313 ~~~~~~~g~~~l~~~d~~~g~~-~~l~~~~-~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
.+... ..|+.+|..+-+. -.|.... ..+ .++.|-| +.+.++++..++|..+||-....+-.+
T Consensus 188 ~tt~d----~tl~~~D~RT~~~~~sI~dAHgq~v---------rdlDfNp---nkq~~lvt~gDdgyvriWD~R~tk~pv 251 (370)
T KOG1007|consen 188 ATTSD----STLQFWDLRTMKKNNSIEDAHGQRV---------RDLDFNP---NKQHILVTCGDDGYVRIWDTRKTKFPV 251 (370)
T ss_pred EEeCC----CcEEEEEccchhhhcchhhhhccee---------eeccCCC---CceEEEEEcCCCccEEEEeccCCCccc
Confidence 33322 3566677655321 1111100 001 1222322 666788888899999998554333334
Q ss_pred EeeccCCcceEEe--eeeCCEEEEEEeCC
Q 004816 391 SLLDIPFTDIDNI--TLGNDCLFVEGASG 417 (729)
Q Consensus 391 ~~lt~~~~~v~~~--~~~~~~~~~~~~~~ 417 (729)
+.|......+..+ -+.-+++++..+++
T Consensus 252 ~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 252 QELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred cccCCCceEEEEEEecCccceEEEecCCC
Confidence 4554444344444 22334555554443
No 360
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.27 E-value=0.079 Score=52.18 Aligned_cols=163 Identities=12% Similarity=0.078 Sum_probs=88.1
Q ss_pred cccCCceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcce
Q 004816 143 QEYGGGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (729)
Q Consensus 143 ~~~~~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~ 221 (729)
|.-|..+.+++.+ .-+.+...+..+-+-.+.+| +-.+..-.. ...+++..|++||.+|+-.+.+ .
T Consensus 305 HtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG-K~LKEfrGH----sSyvn~a~ft~dG~~iisaSsD---------g 370 (508)
T KOG0275|consen 305 HTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG-KCLKEFRGH----SSYVNEATFTDDGHHIISASSD---------G 370 (508)
T ss_pred hccCeeEEEEccCcchhhcccccceEEEeccccc-hhHHHhcCc----cccccceEEcCCCCeEEEecCC---------c
Confidence 5556777766644 22334444555555566652 222222222 3456888999999998876654 3
Q ss_pred EEEEEEcCCCceEEeee--CC-CeeeeeeeCCC-CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcc
Q 004816 222 EIVAIALNGQNIQVLVS--GS-DFYAFPRMDPR-GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIV 297 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~--~~-~~~~~~~~SPD-G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~ 297 (729)
.+-+++..+++...-.. +. ...+..-.-|. -..+.+.. ....+|++++. |++ ++.+...... .
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--------rsntv~imn~q--GQv--VrsfsSGkRE-g 437 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--------RSNTVYIMNMQ--GQV--VRSFSSGKRE-G 437 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--------CCCeEEEEecc--ceE--EeeeccCCcc-C
Confidence 57777887765422211 11 11122222221 22333333 23459999987 554 3333222211 0
Q ss_pred ccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEE
Q 004816 298 ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLA 336 (729)
Q Consensus 298 ~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~ 336 (729)
+..-....||.|. +|+...+ .-||.+...+|+...
T Consensus 438 GdFi~~~lSpkGewiYcigED----~vlYCF~~~sG~LE~ 473 (508)
T KOG0275|consen 438 GDFINAILSPKGEWIYCIGED----GVLYCFSVLSGKLER 473 (508)
T ss_pred CceEEEEecCCCcEEEEEccC----cEEEEEEeecCceee
Confidence 3334567899999 6666544 468888877776543
No 361
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.27 E-value=0.41 Score=50.53 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=78.0
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCc--ceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNS--TTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~--~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
-.+.|.+.|++|.+....+....+.+ .++||++++.....+....-.+....++|+|++++.+.++...+ ..
T Consensus 226 ~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~p------a~ 299 (561)
T COG5354 226 VQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMP------AS 299 (561)
T ss_pred cEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccc------cc
Confidence 45679999999988766554222222 37899999985555444332455667899999999998883332 23
Q ss_pred EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC
Q 004816 272 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g 332 (729)
+-++|+. |.+ +-.++. ..-..+.|||.++ +++..-. +-+.++-.+|+.+.
T Consensus 300 ~s~~~lr--~Nl--~~~~Pe------~~rNT~~fsp~~r~il~agF~-nl~gni~i~~~~~r 350 (561)
T COG5354 300 VSVFDLR--GNL--RFYFPE------QKRNTIFFSPHERYILFAGFD-NLQGNIEIFDPAGR 350 (561)
T ss_pred eeecccc--cce--EEecCC------cccccccccCcccEEEEecCC-ccccceEEeccCCc
Confidence 6677776 333 222222 2224678999999 5554433 44566777887654
No 362
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=96.23 E-value=0.074 Score=55.59 Aligned_cols=139 Identities=14% Similarity=0.045 Sum_probs=85.6
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV 235 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~ 235 (729)
++.|.--.+|.|.+||+... ..++++.... ....-+.+|+||.+|..---+ ..|..+|+..+ ++
T Consensus 522 kvcFsccsdGnI~vwDLhnq-~~VrqfqGht----DGascIdis~dGtklWTGGlD---------ntvRcWDlreg--rq 585 (705)
T KOG0639|consen 522 KVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHT----DGASCIDISKDGTKLWTGGLD---------NTVRCWDLREG--RQ 585 (705)
T ss_pred ceeeeeccCCcEEEEEcccc-eeeecccCCC----CCceeEEecCCCceeecCCCc---------cceeehhhhhh--hh
Confidence 78898888999999999862 3456666552 233667799999986533211 35777888654 33
Q ss_pred eeeC--CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 236 LVSG--SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 236 lt~~--~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
+... ...+.+...+|.|.+|++-- .++.+++.... ..+ +-.+.-.+ .-+-.+.|++=|+.+.
T Consensus 586 lqqhdF~SQIfSLg~cP~~dWlavGM--------ens~vevlh~s-kp~---kyqlhlhe----ScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 586 LQQHDFSSQIFSLGYCPTGDWLAVGM--------ENSNVEVLHTS-KPE---KYQLHLHE----SCVLSLKFAYCGKWFV 649 (705)
T ss_pred hhhhhhhhhheecccCCCccceeeec--------ccCcEEEEecC-Ccc---ceeecccc----cEEEEEEecccCceee
Confidence 3321 12234567889999998543 34557887765 222 11222222 3345678899898555
Q ss_pred EEecCCCceEEEEE
Q 004816 314 VTDRKNGFWNLHKW 327 (729)
Q Consensus 314 ~~~~~~g~~~l~~~ 327 (729)
.... .+..+.|+.
T Consensus 650 StGk-DnlLnawrt 662 (705)
T KOG0639|consen 650 STGK-DNLLNAWRT 662 (705)
T ss_pred ecCc-hhhhhhccC
Confidence 5444 455566664
No 363
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.19 E-value=0.011 Score=59.21 Aligned_cols=144 Identities=9% Similarity=0.071 Sum_probs=88.5
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQ 234 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~ 234 (729)
.|+-+...++.|+++|+..+ ...+.+.-. .+-+.++|+| .. ..|+..+. ..+||.+|.-.- .+.
T Consensus 201 sILas~~sDrsIvLyD~R~~-~Pl~KVi~~-----mRTN~IswnP-ea-fnF~~a~E-------D~nlY~~DmR~l~~p~ 265 (433)
T KOG0268|consen 201 SILASCASDRSIVLYDLRQA-SPLKKVILT-----MRTNTICWNP-EA-FNFVAANE-------DHNLYTYDMRNLSRPL 265 (433)
T ss_pred hheeeeccCCceEEEecccC-Cccceeeee-----ccccceecCc-cc-cceeeccc-------cccceehhhhhhcccc
Confidence 45555556778999999872 233444432 5668899999 33 35554433 267999887531 122
Q ss_pred EeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 235 VLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 235 ~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
.+-.+. .......|||-|+-++-.+.|. .|.++.+. .+..+.+--.... +.+..+.||-|.+.++
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDk--------sIRIf~~~-~~~SRdiYhtkRM-----q~V~~Vk~S~Dskyi~ 331 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDK--------SIRIFPVN-HGHSRDIYHTKRM-----QHVFCVKYSMDSKYII 331 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccc--------eEEEeecC-CCcchhhhhHhhh-----heeeEEEEeccccEEE
Confidence 222222 2344678999999887666443 37777776 4543221111211 5667789999998666
Q ss_pred EEecCCCceEEEEEEc
Q 004816 314 VTDRKNGFWNLHKWIE 329 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~ 329 (729)
...+ .+.-+||+...
T Consensus 332 SGSd-d~nvRlWka~A 346 (433)
T KOG0268|consen 332 SGSD-DGNVRLWKAKA 346 (433)
T ss_pred ecCC-Ccceeeeecch
Confidence 6555 67888987654
No 364
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=96.19 E-value=0.011 Score=50.04 Aligned_cols=59 Identities=24% Similarity=0.332 Sum_probs=45.3
Q ss_pred CCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHH
Q 004816 645 SCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFA 708 (729)
Q Consensus 645 ~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~ 708 (729)
..|+|++.++.|+++|++.++++.+.|.. .+++..++.||+... ....-..+.+.+||.
T Consensus 34 ~~piL~l~~~~Dp~TP~~~a~~~~~~l~~----s~lvt~~g~gHg~~~-~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYEGARAMAARLPG----SRLVTVDGAGHGVYA-GGSPCVDKAVDDYLL 92 (103)
T ss_pred CCCEEEEecCcCCCCcHHHHHHHHHHCCC----ceEEEEeccCcceec-CCChHHHHHHHHHHH
Confidence 48999999999999999999999999874 389999999998653 111233444455555
No 365
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.18 E-value=2.7 Score=50.30 Aligned_cols=60 Identities=10% Similarity=0.062 Sum_probs=43.7
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE----EcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEE
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI----ALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~----dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~ 259 (729)
..+-.+.+-+|...++++... ++|..+ +.++.+...+..-.......+||||+..|+++.
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~---------Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALAS---------GDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CcEEEEEeccCCCcEEEEECC---------ceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence 455667778888877777653 468888 666666666655455567789999999999887
No 366
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.17 E-value=1.6 Score=44.23 Aligned_cols=220 Identities=14% Similarity=0.115 Sum_probs=115.4
Q ss_pred EEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEe
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVL 236 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~l 236 (729)
+.+-..+-.+.+||.++ - .+.+-..-+ ....+..+.|-|-|.+|+-...+ ..|..++.++|-. .++
T Consensus 165 l~tcSsDl~~~LWd~~~--~-~~c~ks~~g-h~h~vS~V~f~P~gd~ilS~srD---------~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 165 LATCSSDLSAKLWDFDT--F-FRCIKSLIG-HEHGVSSVFFLPLGDHILSCSRD---------NTIKAWECDTGYCVKTF 231 (406)
T ss_pred EEecCCccchhheeHHH--H-HHHHHHhcC-cccceeeEEEEecCCeeeecccc---------cceeEEecccceeEEec
Confidence 33333343467777764 2 222221111 13567888999999887654433 3588999999865 456
Q ss_pred eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC--------
Q 004816 237 VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK-------- 308 (729)
Q Consensus 237 t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD-------- 308 (729)
.....++...+.+-||.-+|-.+. ...|.++-++ +++. ...+.+.+ ..+.-.+|.|+
T Consensus 232 ~~h~ewvr~v~v~~DGti~As~s~--------dqtl~vW~~~-t~~~--k~~lR~hE----h~vEci~wap~~~~~~i~~ 296 (406)
T KOG0295|consen 232 PGHSEWVRMVRVNQDGTIIASCSN--------DQTLRVWVVA-TKQC--KAELREHE----HPVECIAWAPESSYPSISE 296 (406)
T ss_pred cCchHhEEEEEecCCeeEEEecCC--------CceEEEEEec-cchh--hhhhhccc----cceEEEEecccccCcchhh
Confidence 666677788889999997775552 2335555555 4422 11222221 11122233332
Q ss_pred ------Cc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEE
Q 004816 309 ------GE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYL 380 (729)
Q Consensus 309 ------G~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~l 380 (729)
|. +.+...+ + ..|-.+|..+|... .|...+ .|.. +..|. .++.++++-.+++.-++
T Consensus 297 at~~~~~~~~l~s~Sr-D--ktIk~wdv~tg~cL~tL~ghd------nwVr---~~af~----p~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSR-D--KTIKIWDVSTGMCLFTLVGHD------NWVR---GVAFS----PGGKYILSCADDKTLRV 360 (406)
T ss_pred ccCCCCCccEEEeecc-c--ceEEEEeccCCeEEEEEeccc------ceee---eeEEc----CCCeEEEEEecCCcEEE
Confidence 22 3333322 2 23555677777432 232333 3432 44555 45667777778888888
Q ss_pred EEEECCCCc-eEeeccCCcceEEeeeeCCEEEEEEeCCCCCceE
Q 004816 381 GILDDFGHS-LSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSV 423 (729)
Q Consensus 381 y~~d~~~g~-~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~l 423 (729)
|-+. .++ .+.+..+..-+..+..+...-++.+++-+.+..+
T Consensus 361 wdl~--~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~Kv 402 (406)
T KOG0295|consen 361 WDLK--NLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKV 402 (406)
T ss_pred EEec--cceeeeccCCCcceeEEEecCCCCceEEeccccceeee
Confidence 8654 333 3334333333444433444445555555544443
No 367
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=96.16 E-value=0.28 Score=51.94 Aligned_cols=124 Identities=14% Similarity=0.193 Sum_probs=77.8
Q ss_pred CCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC
Q 004816 162 YKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD 241 (729)
Q Consensus 162 ~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~ 241 (729)
..+|.+.+++-.+ ...+.+... .......+|+|||.-|+-+.++ ..|-++...|--...|.....
T Consensus 82 s~DGkf~il~k~~--rVE~sv~AH----~~A~~~gRW~~dGtgLlt~GED---------G~iKiWSrsGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 82 SNDGRFVILNKSA--RVERSISAH----AAAISSGRWSPDGAGLLTAGED---------GVIKIWSRSGMLRSTVVQNEE 146 (737)
T ss_pred cCCceEEEecccc--hhhhhhhhh----hhhhhhcccCCCCceeeeecCC---------ceEEEEeccchHHHHHhhcCc
Confidence 3577788887653 333334433 2334667899999998777554 356666654422224444555
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEe
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTD 316 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~ 316 (729)
.....+|.||...|+|+.. .++++-++..+.+. ..-..+| +-+-...|++...|+....
T Consensus 147 ~v~c~~W~p~S~~vl~c~g---------~h~~IKpL~~n~k~---i~WkAHD----GiiL~~~W~~~s~lI~sgG 205 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQG---------GHISIKPLAANSKI---IRWRAHD----GLVLSLSWSTQSNIIASGG 205 (737)
T ss_pred eeEEEEECCCCCceEEecC---------CeEEEeecccccce---eEEeccC----cEEEEeecCccccceeecC
Confidence 5667899999999999973 45888888743332 2223444 5556778998877655543
No 368
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.023 Score=57.85 Aligned_cols=111 Identities=19% Similarity=0.147 Sum_probs=69.4
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEe--cC--CCC-CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDV--NY--GGS-TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG 566 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~--d~--rGs-~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 566 (729)
.-++|++||...+ ........+|...+.|+..+.+ -. +|+ .+|.-+ ..-..+...++..++.+|.+..
T Consensus 116 k~vlvFvHGfNnt-f~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~D------reS~~~Sr~aLe~~lr~La~~~ 188 (377)
T COG4782 116 KTVLVFVHGFNNT-FEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYD------RESTNYSRPALERLLRYLATDK 188 (377)
T ss_pred CeEEEEEcccCCc-hhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccc------hhhhhhhHHHHHHHHHHHHhCC
Confidence 4589999997332 2222333556666666543333 22 221 011111 1111234788999999999886
Q ss_pred CCCCCcEEEEEcChHHHHHHHHHh----C-----CCcceEEEEeccccChhHHh
Q 004816 567 KADEKRLCITGGSAGGYTTLAALA----F-----RDTFKAGASLYGVADLSMLR 611 (729)
Q Consensus 567 ~~d~~ri~i~G~S~GG~~a~~~~~----~-----~~~~~a~v~~~~~~d~~~~~ 611 (729)
. .++|.|++||||.++++.++. . +.+|+-+|+.+|=.|..-+.
T Consensus 189 ~--~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DVF~ 240 (377)
T COG4782 189 P--VKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDVFS 240 (377)
T ss_pred C--CceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhhHH
Confidence 5 478999999999999987763 2 34578888888877765543
No 369
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.01 E-value=0.77 Score=48.58 Aligned_cols=228 Identities=11% Similarity=0.022 Sum_probs=112.9
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee---CCCe
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS---GSDF 242 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~---~~~~ 242 (729)
++++||..+ |....--.....+.....-..||-|.++++.+.. +.|++.++ |+...+... ....
T Consensus 109 ~~~vwd~~s--g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~----------~sl~i~e~-t~n~~~~p~~~lr~~g 175 (561)
T COG5354 109 NVFVWDIAS--GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG----------SSLYIHEI-TDNIEEHPFKNLRPVG 175 (561)
T ss_pred ceeEEeccC--ceeEeeccccCCcccccceeeeeecchhhhhhcc----------CeEEEEec-CCccccCchhhccccc
Confidence 688998876 4321111110000001124578999988877743 56888887 544332211 1234
Q ss_pred eeeeeeCCC--CCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCC
Q 004816 243 YAFPRMDPR--GERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 319 (729)
Q Consensus 243 ~~~~~~SPD--G~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~ 319 (729)
...+.|||- +..|||..-...+. ...+.++.+..+..+....++.-.+ ..+.|.+.|+ |.+....+-
T Consensus 176 i~dFsisP~~n~~~la~~tPEk~~k---pa~~~i~sIp~~s~l~tk~lfk~~~-------~qLkW~~~g~~ll~l~~t~~ 245 (561)
T COG5354 176 ILDFSISPEGNHDELAYWTPEKLNK---PAMVRILSIPKNSVLVTKNLFKVSG-------VQLKWQVLGKYLLVLVMTHT 245 (561)
T ss_pred eeeEEecCCCCCceEEEEccccCCC---CcEEEEEEccCCCeeeeeeeEeecc-------cEEEEecCCceEEEEEEEee
Confidence 566889995 55577776443332 3345555555222333333443322 5688999999 776655421
Q ss_pred -------CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe
Q 004816 320 -------GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL 392 (729)
Q Consensus 320 -------g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~ 392 (729)
|..+||+++......+........+-+..|.+ .++.+.+.+.. ....+-.+++.+. ++-
T Consensus 246 ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p------------~S~~F~vi~g~-~pa~~s~~~lr~N-l~~ 311 (561)
T COG5354 246 KSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEP------------LSSRFAVISGY-MPASVSVFDLRGN-LRF 311 (561)
T ss_pred ecccceeccceEEEEeecccccceeccccccceeeeecc------------cCCceeEEecc-cccceeecccccc-eEE
Confidence 23679998886554444333233444556665 44444444311 1122333444433 222
Q ss_pred eccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCC
Q 004816 393 LDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDD 430 (729)
Q Consensus 393 lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~ 430 (729)
.-.....-..+..+..+++++++=++.-..+-.++..+
T Consensus 312 ~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 312 YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred ecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 22111111222333445555555444445555555444
No 370
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.00 E-value=0.24 Score=47.71 Aligned_cols=112 Identities=19% Similarity=0.199 Sum_probs=57.8
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhh-CC--cEEEEecCCCCCCCchhHHHhhccC-CCcccHHH-HHHHHHHHH
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTS-RG--WAFVDVNYGGSTGYGREFRERLLGR-WGIVDVND-CCSCATFLV 563 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~-~G--~~v~~~d~rGs~g~g~~~~~~~~~~-~~~~~~~D-~~~~~~~l~ 563 (729)
....|.|+++.|.|+.. ..|..++..+-. .+ ..|..+-..|.-+-..+.++..... -.....+| +..=++++.
T Consensus 26 ~~~~~li~~IpGNPG~~--gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik 103 (301)
T KOG3975|consen 26 GEDKPLIVWIPGNPGLL--GFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIK 103 (301)
T ss_pred CCCceEEEEecCCCCch--hHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHH
Confidence 45678999999987653 223333333322 12 3344444433222221111111111 01112233 334455555
Q ss_pred hCCCCCCCcEEEEEcChHHHHHHHHHh-C--CCcceEEEEecc
Q 004816 564 GSGKADEKRLCITGGSAGGYTTLAALA-F--RDTFKAGASLYG 603 (729)
Q Consensus 564 ~~~~~d~~ri~i~G~S~GG~~a~~~~~-~--~~~~~a~v~~~~ 603 (729)
+.- ....|+.|+|||-|+|+.++++. . .-.+..+++..|
T Consensus 104 ~~~-Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 104 EYV-PKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred HhC-CCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 543 23479999999999999999986 2 223555555554
No 371
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.98 E-value=0.34 Score=51.70 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=70.6
Q ss_pred ecceecCCCCEEEEEEeccCCCCC---CcceEEEEEEcCC--Cc---eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDAL---NSTTEIVAIALNG--QN---IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~---~~~~~l~~~dl~~--g~---~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
...+|+++|+-++..+.+.+.... .....|++++-.. |. .+.+..+.....++++.+|| |++..
T Consensus 17 ~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~~------ 88 (367)
T TIGR02604 17 IAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVAT------ 88 (367)
T ss_pred ceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEeC------
Confidence 556788888843222211111000 0113677776432 32 24445555556788999998 54432
Q ss_pred CCCCcEEEEE-EecCCCCee--eeEEecCCCCC---ccccccCceeCCCCcEEEEEecCC----------------CceE
Q 004816 266 PWDKAELWVG-YISENGDVY--KRVCVAGFDPT---IVESPTEPKWSSKGELFFVTDRKN----------------GFWN 323 (729)
Q Consensus 266 ~~~~~~l~~~-d~~~~g~~~--~~~~~~~~~~~---~~~~~~~~~wspDG~l~~~~~~~~----------------g~~~ 323 (729)
..+|+.+ |.+.++... ...+..+.... .......+.|.|||+||+...... ....
T Consensus 89 ---~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 89 ---PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred ---CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 2347766 443222221 12233332210 003456789999999877544200 0136
Q ss_pred EEEEEcCCCeEEEeec
Q 004816 324 LHKWIESNNEVLAIYS 339 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~ 339 (729)
++++++++++.+.+..
T Consensus 166 i~r~~pdg~~~e~~a~ 181 (367)
T TIGR02604 166 LFRYNPDGGKLRVVAH 181 (367)
T ss_pred EEEEecCCCeEEEEec
Confidence 9999999888776653
No 372
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=95.94 E-value=0.11 Score=65.68 Aligned_cols=97 Identities=13% Similarity=0.125 Sum_probs=60.6
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCc
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKR 572 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r 572 (729)
|.++++||.++. ...|..+.+.+ ..++.|+.++.+|.+.. .. ....++++.+.+...+... ....+
T Consensus 1069 ~~l~~lh~~~g~--~~~~~~l~~~l-~~~~~v~~~~~~g~~~~-~~---------~~~~l~~la~~~~~~i~~~-~~~~p 1134 (1296)
T PRK10252 1069 PTLFCFHPASGF--AWQFSVLSRYL-DPQWSIYGIQSPRPDGP-MQ---------TATSLDEVCEAHLATLLEQ-QPHGP 1134 (1296)
T ss_pred CCeEEecCCCCc--hHHHHHHHHhc-CCCCcEEEEECCCCCCC-CC---------CCCCHHHHHHHHHHHHHhh-CCCCC
Confidence 568889997543 34566666665 44699999999865321 00 0112333333322222221 11357
Q ss_pred EEEEEcChHHHHHHHHHh----CCCcceEEEEecc
Q 004816 573 LCITGGSAGGYTTLAALA----FRDTFKAGASLYG 603 (729)
Q Consensus 573 i~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~ 603 (729)
+.++|||+||.++..++. +++++..+++..+
T Consensus 1135 ~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1135 YHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred EEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 999999999999988876 5778888877664
No 373
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=95.94 E-value=0.0098 Score=62.30 Aligned_cols=126 Identities=18% Similarity=0.217 Sum_probs=80.8
Q ss_pred EEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchh-hhHHHhhC-CcEEEEecCCCCCCCchhHH---Hhhcc
Q 004816 471 KAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNL-SIQYWTSR-GWAFVDVNYGGSTGYGREFR---ERLLG 545 (729)
Q Consensus 471 ~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~-~~~~la~~-G~~v~~~d~rGs~g~g~~~~---~~~~~ 545 (729)
.+..-+|.|.. + ..+.-++|+++||+.-......+. -...|+.. ..+|+.+|||-+ .+|--+. ....+
T Consensus 120 CLYlNVW~P~~-~-----p~n~tVlVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG-~FGFL~l~~~~eaPG 192 (601)
T KOG4389|consen 120 CLYLNVWAPAA-D-----PYNLTVLVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVG-AFGFLYLPGHPEAPG 192 (601)
T ss_pred ceEEEEeccCC-C-----CCCceEEEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeec-cceEEecCCCCCCCC
Confidence 45666677732 1 223348999999864443443332 23455554 578999999952 3443322 23345
Q ss_pred CCCcccHHHHHHHHHHHHhC---CCCCCCcEEEEEcChHHHHHH-HHHh--CCCcceEEEEeccccC
Q 004816 546 RWGIVDVNDCCSCATFLVGS---GKADEKRLCITGGSAGGYTTL-AALA--FRDTFKAGASLYGVAD 606 (729)
Q Consensus 546 ~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~~a~-~~~~--~~~~~~a~v~~~~~~d 606 (729)
++| +-|..-|++|+.++ ..-|+++|.++|.|+|+..+. ++++ --..|+.+|+.+|..+
T Consensus 193 NmG---l~DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~ 256 (601)
T KOG4389|consen 193 NMG---LLDQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLN 256 (601)
T ss_pred ccc---hHHHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCC
Confidence 555 78899999999886 345899999999999997653 4443 2337888887776543
No 374
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.93 E-value=0.061 Score=56.16 Aligned_cols=133 Identities=11% Similarity=0.027 Sum_probs=86.4
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|+++...++-+...+|.+-+||+.+ ..+..-... .....-.+++|||-...|+....-+ ..|+++|.
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g--~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~D--------kki~~yD~ 238 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQG--MSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYD--------KKINIYDI 238 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccC--CCcccchhh--hccCCcCcceecCCccceEEEeccc--------ceEEEeec
Confidence 35666667777777889999999986 332211111 0112237789999888776654322 46999998
Q ss_pred CCCce-EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 229 NGQNI-QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 229 ~~g~~-~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
.+.+. ..|+... ..+..+|+|+|.+|+--. .+.+|+.||+. +...++.....++ .++..++|-+
T Consensus 239 ~s~~s~~~l~y~~-Plstvaf~~~G~~L~aG~--------s~G~~i~YD~R--~~k~Pv~v~sah~----~sVt~vafq~ 303 (673)
T KOG4378|consen 239 RSQASTDRLTYSH-PLSTVAFSECGTYLCAGN--------SKGELIAYDMR--STKAPVAVRSAHD----ASVTRVAFQP 303 (673)
T ss_pred ccccccceeeecC-CcceeeecCCceEEEeec--------CCceEEEEecc--cCCCCceEeeecc----cceeEEEeee
Confidence 76543 3455432 345689999999887443 24569999997 3334566666666 6677777766
Q ss_pred C
Q 004816 308 K 308 (729)
Q Consensus 308 D 308 (729)
-
T Consensus 304 s 304 (673)
T KOG4378|consen 304 S 304 (673)
T ss_pred c
Confidence 4
No 375
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.84 E-value=0.038 Score=54.84 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=64.5
Q ss_pred CEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCCCCCC
Q 004816 493 PLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEK 571 (729)
Q Consensus 493 P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ 571 (729)
|.|+++|+. ......|..+..++... .-|+.++.+|.++..... ...+|..+. ++.+.+. -...
T Consensus 1 ~pLF~fhp~--~G~~~~~~~L~~~l~~~-~~v~~l~a~g~~~~~~~~----------~~l~~~a~~yv~~Ir~~--QP~G 65 (257)
T COG3319 1 PPLFCFHPA--GGSVLAYAPLAAALGPL-LPVYGLQAPGYGAGEQPF----------ASLDDMAAAYVAAIRRV--QPEG 65 (257)
T ss_pred CCEEEEcCC--CCcHHHHHHHHHHhccC-ceeeccccCccccccccc----------CCHHHHHHHHHHHHHHh--CCCC
Confidence 468999997 33456677777777776 889999998765422211 123443332 3333332 1245
Q ss_pred cEEEEEcChHHHHHHHHHh----CCCcceEEEEeccccC
Q 004816 572 RLCITGGSAGGYTTLAALA----FRDTFKAGASLYGVAD 606 (729)
Q Consensus 572 ri~i~G~S~GG~~a~~~~~----~~~~~~a~v~~~~~~d 606 (729)
.+.+.|+|+||.+|.-++. ....+..++++..+..
T Consensus 66 Py~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 66 PYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred CEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 7999999999999988875 4556777777766554
No 376
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=95.82 E-value=0.71 Score=44.86 Aligned_cols=123 Identities=13% Similarity=0.060 Sum_probs=69.9
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee--CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS--GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~--~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
.+....|||+++.+.+-+... --+|.+|-++.....++. ..+.-..-.||......|... .+.
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~-------Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~--------Qdg 225 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRR-------VFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVF--------QDG 225 (344)
T ss_pred eeeeEEcCCCceEEEecCCCc-------ceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEe--------cCC
Confidence 467889999999888865431 224444444433333322 222222347887777666655 234
Q ss_pred EEEEEEecCCCCeee-eEEe-cCCCCCccccccCceeCCCCc--EEEEEecCCCceEEEEEEcCCCeEEEe
Q 004816 271 ELWVGYISENGDVYK-RVCV-AGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAI 337 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~-~~~~-~~~~~~~~~~~~~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~~~~l 337 (729)
.+.++|+.-.+..-. .... +... +.+....||+-|- |+|.+. ++..+.++|..++.-.++
T Consensus 226 ~~~I~DVR~~~tpm~~~sstrp~hn----Ga~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 226 TCAIYDVRNMATPMAEISSTRPHHN----GAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred cEEEEEecccccchhhhcccCCCCC----CceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeE
Confidence 578888762232210 1111 1122 5666778998775 777663 567788889888754433
No 377
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.79 E-value=1.9 Score=42.97 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=81.5
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCC--EEEEEEeccCCCCCCcceEEE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFN--RYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~--~l~~~~~~~~~~~~~~~~~l~ 224 (729)
+.+.++++-. +.+...+..|.+||+... .+...|... ....+...|.|+-. +|+-.+++ ++|.
T Consensus 46 itavAVs~~~-~aSGssDetI~IYDm~k~-~qlg~ll~H----agsitaL~F~~~~S~shLlS~sdD---------G~i~ 110 (362)
T KOG0294|consen 46 ITALAVSGPY-VASGSSDETIHIYDMRKR-KQLGILLSH----AGSITALKFYPPLSKSHLLSGSDD---------GHII 110 (362)
T ss_pred eeEEEeccee-EeccCCCCcEEEEeccch-hhhcceecc----ccceEEEEecCCcchhheeeecCC---------CcEE
Confidence 4455554332 223334558999999752 233333333 35567777777764 55555443 4577
Q ss_pred EEEcCCC-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCc
Q 004816 225 AIALNGQ-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEP 303 (729)
Q Consensus 225 ~~dl~~g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~ 303 (729)
+++...= ....+-...+..++.+..|.|| ||..-.++ ..|..+++- .|+..-+..+... ...+
T Consensus 111 iw~~~~W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D-------~~lr~WNLV-~Gr~a~v~~L~~~-------at~v 174 (362)
T KOG0294|consen 111 IWRVGSWELLKSLKAHKGQVTDLSIHPSGK-LALSVGGD-------QVLRTWNLV-RGRVAFVLNLKNK-------ATLV 174 (362)
T ss_pred EEEcCCeEEeeeecccccccceeEecCCCc-eEEEEcCC-------ceeeeehhh-cCccceeeccCCc-------ceee
Confidence 7776431 1122333445578889999998 66544222 236777776 5654333333322 2458
Q ss_pred eeCCCCcEEEEEecCCCceEEEEEE
Q 004816 304 KWSSKGELFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 304 ~wspDG~l~~~~~~~~g~~~l~~~d 328 (729)
.|+|.|.-+++.-+ ..-.||..+
T Consensus 175 ~w~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 175 SWSPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred EEcCCCCEEEEEec--cEEEEEecc
Confidence 99999983333332 234455444
No 378
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.76 E-value=0.29 Score=47.02 Aligned_cols=178 Identities=10% Similarity=0.034 Sum_probs=98.9
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe---eeCC
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL---VSGS 240 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l---t~~~ 240 (729)
.|+|++.++..+ +..+.+..- +. .....+.+||+.-..+++++..+ ..|-++|+. .....| -+..
T Consensus 37 ~G~L~ile~~~~-~gi~e~~s~-d~-~D~LfdV~Wse~~e~~~~~a~GD--------GSLrl~d~~-~~s~Pi~~~kEH~ 104 (311)
T KOG0277|consen 37 NGRLFILEVTDP-KGIQECQSY-DT-EDGLFDVAWSENHENQVIAASGD--------GSLRLFDLT-MPSKPIHKFKEHK 104 (311)
T ss_pred CceEEEEecCCC-CCeEEEEee-ec-ccceeEeeecCCCcceEEEEecC--------ceEEEeccC-CCCcchhHHHhhh
Confidence 468888888531 222222111 11 23467899999888777776644 356666743 222222 2333
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKN 319 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~ 319 (729)
....+..|++--+++..++. |+ ..|-+++.. -+. .+..+.+.. .-+....|+|--. ++..... .
T Consensus 105 ~EV~Svdwn~~~r~~~ltsS------WD-~TiKLW~~~-r~~--Sv~Tf~gh~----~~Iy~a~~sp~~~nlfas~Sg-d 169 (311)
T KOG0277|consen 105 REVYSVDWNTVRRRIFLTSS------WD-GTIKLWDPN-RPN--SVQTFNGHN----SCIYQAAFSPHIPNLFASASG-D 169 (311)
T ss_pred hheEEeccccccceeEEeec------cC-CceEeecCC-CCc--ceEeecCCc----cEEEEEecCCCCCCeEEEccC-C
Confidence 44566789996666665551 22 124444433 122 255566665 5567788999655 5544433 5
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEE
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLG 381 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly 381 (729)
+..+||-++.. |+...+.-...+...-.|.. -+..++++..-++-.+.|
T Consensus 170 ~~l~lwdvr~~-gk~~~i~ah~~Eil~cdw~k------------y~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 170 GTLRLWDVRSP-GKFMSIEAHNSEILCCDWSK------------YNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ceEEEEEecCC-CceeEEEeccceeEeecccc------------cCCcEEEecCCCceEEEE
Confidence 77788876655 44444543334444456653 445577776655554444
No 379
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.72 E-value=0.34 Score=49.11 Aligned_cols=140 Identities=7% Similarity=0.033 Sum_probs=81.9
Q ss_pred eEEEEEEcCCCce-EEeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 221 TEIVAIALNGQNI-QVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 221 ~~l~~~dl~~g~~-~~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
.+||++|+..-+. ..|.. ..........++.+.+|||=+.. +..+|+++|+. += +....+..++
T Consensus 106 e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~------t~GdV~l~d~~-nl--~~v~~I~aH~--- 173 (391)
T KOG2110|consen 106 ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST------TSGDVVLFDTI-NL--QPVNTINAHK--- 173 (391)
T ss_pred ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC------CCceEEEEEcc-cc--eeeeEEEecC---
Confidence 3599999976432 22211 22223344555666799987533 34679999976 33 3455666666
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN 375 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~ 375 (729)
..+..+++++||.++.++.. .| .-|-++...+|+ ..+.-.+. .-....++.|.+ +. .++..+...
T Consensus 174 -~~lAalafs~~G~llATASe-KG-TVIRVf~v~~G~kl~eFRRG~-------~~~~IySL~Fs~---ds-~~L~~sS~T 239 (391)
T KOG2110|consen 174 -GPLAALAFSPDGTLLATASE-KG-TVIRVFSVPEGQKLYEFRRGT-------YPVSIYSLSFSP---DS-QFLAASSNT 239 (391)
T ss_pred -CceeEEEECCCCCEEEEecc-Cc-eEEEEEEcCCccEeeeeeCCc-------eeeEEEEEEECC---CC-CeEEEecCC
Confidence 67788999999995555554 34 334444444443 33332221 112334566663 44 456666668
Q ss_pred CeEEEEEEECC
Q 004816 376 GRSYLGILDDF 386 (729)
Q Consensus 376 g~~~ly~~d~~ 386 (729)
+..||+.++..
T Consensus 240 eTVHiFKL~~~ 250 (391)
T KOG2110|consen 240 ETVHIFKLEKV 250 (391)
T ss_pred CeEEEEEeccc
Confidence 88999988754
No 380
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=95.70 E-value=0.087 Score=42.75 Aligned_cols=77 Identities=14% Similarity=0.074 Sum_probs=51.3
Q ss_pred cceecCCCCEEEEEEeccCCC---------CCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCC
Q 004816 195 DGIFDPRFNRYVTVREDRRQD---------ALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNM 265 (729)
Q Consensus 195 ~~~~SPdG~~l~~~~~~~~~~---------~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~ 265 (729)
++.+++++..|+|+....... .......|+.+|+.+++.+.|..+-.+.++.+.|||++.|++....
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~---- 77 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG---- 77 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG----
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc----
Confidence 456788866677775432211 1123578999999999999999888899999999999999988743
Q ss_pred CCCCcEEEEEEec
Q 004816 266 PWDKAELWVGYIS 278 (729)
Q Consensus 266 ~~~~~~l~~~d~~ 278 (729)
..+|..+-++
T Consensus 78 ---~~Ri~rywl~ 87 (89)
T PF03088_consen 78 ---RYRILRYWLK 87 (89)
T ss_dssp ---GTEEEEEESS
T ss_pred ---CceEEEEEEe
Confidence 3446666554
No 381
>PLN02209 serine carboxypeptidase
Probab=95.68 E-value=0.047 Score=59.11 Aligned_cols=138 Identities=13% Similarity=0.140 Sum_probs=80.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-h---h-----------------hhHHHhh
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-N---L-----------------SIQYWTS 519 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~---~-----------------~~~~la~ 519 (729)
+.+... .+..+..|+++..+ ..+..|+|+++-|||++...... . + .-..|.+
T Consensus 44 ~~v~~~-~~~~lf~~f~es~~------~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~ 116 (437)
T PLN02209 44 IGIGEE-ENVQFFYYFIKSDK------NPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTK 116 (437)
T ss_pred EEecCC-CCeEEEEEEEecCC------CCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhh
Confidence 444333 46778888887543 23557999999999976533211 0 0 0011222
Q ss_pred CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHH-HHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC--
Q 004816 520 RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATF-LVGSGKADEKRLCITGGSAGGYTTLAALA----FR-- 592 (729)
Q Consensus 520 ~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~-l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~-- 592 (729)
=.+++.+|.+-+.|+...-....... ...+.+|+..+++. +...+.....++.|+|.|+||..+-.++. ..
T Consensus 117 -~anllfiDqPvGtGfSy~~~~~~~~~-~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~ 194 (437)
T PLN02209 117 -TANIIFLDQPVGSGFSYSKTPIERTS-DTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYI 194 (437)
T ss_pred -cCcEEEecCCCCCCccCCCCCCCccC-CHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhccc
Confidence 25788999776666653211111100 11234666666553 33344445568999999999986655543 21
Q ss_pred -----CcceEEEEeccccCh
Q 004816 593 -----DTFKAGASLYGVADL 607 (729)
Q Consensus 593 -----~~~~a~v~~~~~~d~ 607 (729)
-.++++++.+|++|.
T Consensus 195 ~~~~~inl~Gi~igng~td~ 214 (437)
T PLN02209 195 CCNPPINLQGYVLGNPITHI 214 (437)
T ss_pred ccCCceeeeeEEecCcccCh
Confidence 257899999888764
No 382
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=95.65 E-value=1.3 Score=45.09 Aligned_cols=131 Identities=10% Similarity=0.048 Sum_probs=78.8
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
+......|++ -..++-.+||+ .|.++|+. +|.. ...+... ..+..+..+|..+|+.....
T Consensus 261 ~~Vs~V~w~d-~~v~yS~SwDH--------TIk~WDle-tg~~--~~~~~~~-----ksl~~i~~~~~~~Ll~~gss--- 320 (423)
T KOG0313|consen 261 EPVSSVVWSD-ATVIYSVSWDH--------TIKVWDLE-TGGL--KSTLTTN-----KSLNCISYSPLSKLLASGSS--- 320 (423)
T ss_pred cceeeEEEcC-CCceEeecccc--------eEEEEEee-cccc--eeeeecC-----cceeEeecccccceeeecCC---
Confidence 4566788987 44455566655 38889998 5654 2222222 34556778887774444322
Q ss_pred ceEEEEEEcCCCeE----EEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 321 FWNLHKWIESNNEV----LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 321 ~~~l~~~d~~~g~~----~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
..+|.++||.++.- ..+......+....|.| .+...+++...|+...||-+....+.+-.|...
T Consensus 321 dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp------------~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 321 DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSP------------TNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred CCceeecCCCCCCCceeEEeeecchhhhhheecCC------------CCceEEEEEecCCeEEEEEeccCCCcceeeccC
Confidence 35677889987642 23334555666777776 555667777788888888665444444455555
Q ss_pred CcceEEe
Q 004816 397 FTDIDNI 403 (729)
Q Consensus 397 ~~~v~~~ 403 (729)
+.-+-++
T Consensus 389 ~DKvl~v 395 (423)
T KOG0313|consen 389 NDKVLSV 395 (423)
T ss_pred CceEEEE
Confidence 4444444
No 383
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=95.64 E-value=1 Score=49.35 Aligned_cols=69 Identities=13% Similarity=0.001 Sum_probs=47.6
Q ss_pred CCCEEEEEEEECCe--EEEEEEECC-CCceEeeccCCcceEE-eeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 364 EKNLIACSYRQNGR--SYLGILDDF-GHSLSLLDIPFTDIDN-ITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 364 ~~~~l~~~s~~~g~--~~ly~~d~~-~g~~~~lt~~~~~v~~-~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
..+.+||...+++. .|||++... .|+..+||.+...... ++.+-+.++...++...|..+..+.+..++
T Consensus 514 ~~~LVYf~gt~d~PlE~hLyvvsye~~g~~~rlt~~g~sh~~~l~~~~d~fv~~~~sv~sP~cv~~y~ls~~~ 586 (867)
T KOG2281|consen 514 VRKLVYFVGTKDTPLEHHLYVVSYENPGEIARLTEPGYSHSCELDQQCDHFVSYYSSVGSPPCVSLYSLSWPE 586 (867)
T ss_pred cceEEEEEccCCCCceeeEEEEEEecCCceeeccCCCcccchhhhhhhhhHhhhhhcCCCCceEEEEeccCCc
Confidence 34568898888774 789999988 8999999976543322 333334467777778888876666555543
No 384
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.60 E-value=2.2 Score=46.66 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=39.0
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYV 206 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~ 206 (729)
-+|.|+|..++... +.+|+++|...| +....|... ...+.-.+||.||++.+
T Consensus 18 ~afkPDGsqL~lAA--g~rlliyD~ndG-~llqtLKgH----KDtVycVAys~dGkrFA 69 (1081)
T KOG1538|consen 18 IAFKPDGTQLILAA--GSRLLVYDTSDG-TLLQPLKGH----KDTVYCVAYAKDGKRFA 69 (1081)
T ss_pred eEECCCCceEEEec--CCEEEEEeCCCc-ccccccccc----cceEEEEEEccCCceec
Confidence 45778888887774 557999999874 556666665 46678889999999754
No 385
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.22 Score=48.22 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=34.1
Q ss_pred EEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCcccHHHHHHHHHHHHHH
Q 004816 648 IILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKAENIKFTLEQQMVFFAR 709 (729)
Q Consensus 648 vL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~~~~~~~~~~~~~fl~~ 709 (729)
+.++.+++|..+|......+.+... .+++...+ .||.-..--....+-++|.+-|++
T Consensus 309 ~ivv~A~~D~Yipr~gv~~lQ~~WP----g~eVr~~e-gGHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKEDAYIPRTGVRSLQEIWP----GCEVRYLE-GGHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCCccccccCcHHHHHhCC----CCEEEEee-cCceeeeehhchHHHHHHHHHHHh
Confidence 5677899999999866666666665 33555554 689632222223444455555544
No 386
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.56 E-value=2.5 Score=42.26 Aligned_cols=111 Identities=16% Similarity=0.095 Sum_probs=75.1
Q ss_pred CCceEEEE--CCEEEEEECCCCcEEEEeCCCCCCCC---eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcc
Q 004816 146 GGGAFRIF--GDTVIFSNYKDQRLYKHSIDSKDSSP---LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNST 220 (729)
Q Consensus 146 ~~~~~~~~--~~~i~~~~~~~~~l~~~d~~~~~~~~---~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~ 220 (729)
|-.++.+. ...|+|.....|+|-+.|+.. .+. ..+..+ .....-.+++-+|..|+-.+...
T Consensus 138 GlC~~~~~~~k~~LafPg~k~GqvQi~dL~~--~~~~~p~~I~AH----~s~Iacv~Ln~~Gt~vATaStkG-------- 203 (346)
T KOG2111|consen 138 GLCSLCPTSNKSLLAFPGFKTGQVQIVDLAS--TKPNAPSIINAH----DSDIACVALNLQGTLVATASTKG-------- 203 (346)
T ss_pred ceEeecCCCCceEEEcCCCccceEEEEEhhh--cCcCCceEEEcc----cCceeEEEEcCCccEEEEeccCc--------
Confidence 34445443 226788888889999999975 333 334433 24456778999999876665543
Q ss_pred eEEEEEEcCCCceE-EeeeCCC--eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEec
Q 004816 221 TEIVAIALNGQNIQ-VLVSGSD--FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYIS 278 (729)
Q Consensus 221 ~~l~~~dl~~g~~~-~lt~~~~--~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~ 278 (729)
.-|.++|..+|+.. .+-.|.+ .....+||||+++||..+ +...|+++.+.
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS--------dKgTlHiF~l~ 256 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS--------DKGTLHIFSLR 256 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc--------CCCeEEEEEee
Confidence 45667798887653 3444433 345679999999999887 44569998887
No 387
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.55 E-value=0.088 Score=57.00 Aligned_cols=131 Identities=16% Similarity=0.181 Sum_probs=76.8
Q ss_pred CCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccc-h---h-----------------hhHHHhhCCcEEEE
Q 004816 468 PGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGIL-N---L-----------------SIQYWTSRGWAFVD 526 (729)
Q Consensus 468 dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~-~---~-----------------~~~~la~~G~~v~~ 526 (729)
.+..+..|+++..+ ..+..|+|+++-|||++...... . + .-..|.+ -.+++.
T Consensus 48 ~~~~lfy~f~es~~------~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~-~anllf 120 (433)
T PLN03016 48 ENVQFFYYFIKSEN------NPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTK-MANIIF 120 (433)
T ss_pred CCeEEEEEEEecCC------CcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhh-cCcEEE
Confidence 46778888887644 23567999999999985432110 0 0 0011222 267899
Q ss_pred ecCCCCCCCchhHHHhhccCCCc-ccHHHHHHHHH-HHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC-------C
Q 004816 527 VNYGGSTGYGREFRERLLGRWGI-VDVNDCCSCAT-FLVGSGKADEKRLCITGGSAGGYTTLAALA----FR-------D 593 (729)
Q Consensus 527 ~d~rGs~g~g~~~~~~~~~~~~~-~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~-------~ 593 (729)
+|.+-+.|+...- ........ .+++|+..++. |+...+.....++.|.|.|+||..+-.++. .. -
T Consensus 121 iDqPvGtGfSy~~--~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~i 198 (433)
T PLN03016 121 LDQPVGSGFSYSK--TPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPI 198 (433)
T ss_pred ecCCCCCCccCCC--CCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCcc
Confidence 9977666654321 11111111 12345655555 444444445678999999999986655543 11 2
Q ss_pred cceEEEEeccccCh
Q 004816 594 TFKAGASLYGVADL 607 (729)
Q Consensus 594 ~~~a~v~~~~~~d~ 607 (729)
.++++++.+|+.+.
T Consensus 199 nLkGi~iGNg~t~~ 212 (433)
T PLN03016 199 NLQGYMLGNPVTYM 212 (433)
T ss_pred cceeeEecCCCcCc
Confidence 57899999987654
No 388
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=95.53 E-value=0.53 Score=50.15 Aligned_cols=178 Identities=17% Similarity=0.084 Sum_probs=100.7
Q ss_pred CCCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEE-EEecCCCCCCC---chhHHHhhccCCCcccHHHHHHHHHHHHh
Q 004816 489 EEKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAF-VDVNYGGSTGY---GREFRERLLGRWGIVDVNDCCSCATFLVG 564 (729)
Q Consensus 489 ~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v-~~~d~rGs~g~---g~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 564 (729)
+-|+|+.|++-|.-. ...|..+ -+|...|--. +.-|.|-.||. |.+-. -+.+..+|+..++
T Consensus 286 D~KPPL~VYFSGyR~---aEGFEgy-~MMk~Lg~PfLL~~DpRleGGaFYlGs~ey-----------E~~I~~~I~~~L~ 350 (511)
T TIGR03712 286 DFKPPLNVYFSGYRP---AEGFEGY-FMMKRLGAPFLLIGDPRLEGGAFYLGSDEY-----------EQGIINVIQEKLD 350 (511)
T ss_pred CCCCCeEEeeccCcc---cCcchhH-HHHHhcCCCeEEeeccccccceeeeCcHHH-----------HHHHHHHHHHHHH
Confidence 456899999988622 3334321 2334456554 45588866651 22211 1335555565555
Q ss_pred CCCCCCCcEEEEEcChHHHHHHHHHh--CCCcceEEEEeccccChhHHhhhcchhhhh----hhhhh---cC--------
Q 004816 565 SGKADEKRLCITGGSAGGYTTLAALA--FRDTFKAGASLYGVADLSMLRAETHKFESR----YIDNL---VG-------- 627 (729)
Q Consensus 565 ~~~~d~~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~~~~d~~~~~~~~~~~~~~----~~~~~---~~-------- 627 (729)
.-..+.+.+.+.|.|||.+-|+.+++ .| .|+|..-|++++-.++......... .++-+ .+
T Consensus 351 ~LgF~~~qLILSGlSMGTfgAlYYga~l~P---~AIiVgKPL~NLGtiA~n~rL~RP~~F~TslDvl~~~~g~~s~~~i~ 427 (511)
T TIGR03712 351 YLGFDHDQLILSGLSMGTFGALYYGAKLSP---HAIIVGKPLVNLGTIASRMRLDRPDEFGTALDILLLNTGGTSSEDVV 427 (511)
T ss_pred HhCCCHHHeeeccccccchhhhhhcccCCC---ceEEEcCcccchhhhhccccccCCCCCchHHHhHHhhcCCCCHHHHH
Confidence 55678899999999999999999998 44 6888999999987776543221100 00100 01
Q ss_pred --ChhhhhhcCcccccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcc
Q 004816 628 --SEKDYYEKSPINFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHG 689 (729)
Q Consensus 628 --~~~~~~~~sp~~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~ 689 (729)
+...|... ...+--++..-+..=.+|.. ....-.++.+.|...++++--.-+|| .|+
T Consensus 428 ~ln~~fW~~f---~~~d~S~T~F~i~YM~~DDY-D~~A~~~L~~~l~~~~~~v~~kG~~G-RHN 486 (511)
T TIGR03712 428 KLDNRFWKKF---KKSDLSKTTFAIAYMKNDDY-DPTAFQDLLPYLSKQGAQVMSKGIPG-RHN 486 (511)
T ss_pred HHHHHHHHHH---hhcCcccceEEEEeeccccC-CHHHHHHHHHHHHhcCCEEEecCCCC-CCC
Confidence 11111111 11222235555555455543 44556678888887776655555554 464
No 389
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=95.48 E-value=0.075 Score=57.11 Aligned_cols=140 Identities=15% Similarity=0.152 Sum_probs=83.1
Q ss_pred EEeeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-hh----hH----HHh------hCCcEEE
Q 004816 461 IEFPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-LS----IQ----YWT------SRGWAFV 525 (729)
Q Consensus 461 ~~~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-~~----~~----~la------~~G~~v~ 525 (729)
+.+... .+..+.+|+++..+ ..+..|+||++-|||+...-...- .. +. -|. .+=-+++
T Consensus 49 v~v~~~-~~~~LFYwf~eS~~------~P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiL 121 (454)
T KOG1282|consen 49 VTVNES-EGRQLFYWFFESEN------NPETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANIL 121 (454)
T ss_pred EECCCC-CCceEEEEEEEccC------CCCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEE
Confidence 344444 68889999987654 134568999999999865332211 00 00 000 1124578
Q ss_pred EecCCCCCCCchhHHHhhccCCCcccHHHHHHH-HHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC-------C
Q 004816 526 DVNYGGSTGYGREFRERLLGRWGIVDVNDCCSC-ATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR-------D 593 (729)
Q Consensus 526 ~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~-------~ 593 (729)
.+|-+-+.|+.-+-.......--.....|...+ .+|+.+.+......+.|.|.||+|...-.++. +. -
T Consensus 122 fLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~i 201 (454)
T KOG1282|consen 122 FLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNI 201 (454)
T ss_pred EEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcc
Confidence 888776555443221111110111225665554 45777777667789999999999976655542 21 2
Q ss_pred cceEEEEeccccCh
Q 004816 594 TFKAGASLYGVADL 607 (729)
Q Consensus 594 ~~~a~v~~~~~~d~ 607 (729)
.+++.++.+|++|.
T Consensus 202 NLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 202 NLKGYAIGNGLTDP 215 (454)
T ss_pred cceEEEecCcccCc
Confidence 57999999988753
No 390
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.43 E-value=2.2 Score=47.57 Aligned_cols=187 Identities=8% Similarity=-0.058 Sum_probs=94.0
Q ss_pred EEEEEECC-CCcEEEEeCCCCCCCCeecCCCCCC---Cceee------------e--cceecCCCCEEEEEEeccCCCCC
Q 004816 156 TVIFSNYK-DQRLYKHSIDSKDSSPLPITPDYGE---PLVSY------------A--DGIFDPRFNRYVTVREDRRQDAL 217 (729)
Q Consensus 156 ~i~~~~~~-~~~l~~~d~~~~~~~~~~lt~~~~~---~~~~~------------~--~~~~SPdG~~l~~~~~~~~~~~~ 217 (729)
+-+|.++. .+++-+++++. -+..+|+..+.. .+.++ . ..=++|||+.+.-. .
T Consensus 142 r~~findk~n~Rvari~l~~--~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~--------~ 211 (635)
T PRK02888 142 RYLFINDKANTRVARIRLDV--MKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDP--------K 211 (635)
T ss_pred eEEEEecCCCcceEEEECcc--EeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecc--------c
Confidence 56677654 45888888876 444444432110 01111 1 11266777754211 1
Q ss_pred CcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 218 NSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 218 ~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
.+.+.+-+||.++-++. ++.-+ +......++|||++++++..+.. ....+..++.. +.. ....+ +..
T Consensus 212 ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE----~G~tl~em~a~-e~d--~~vvf-ni~--- 279 (635)
T PRK02888 212 KYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSE----EGVTLAEMMAA-ERD--WVVVF-NIA--- 279 (635)
T ss_pred ceeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcc----cCcceeeeccc-cCc--eEEEE-chH---
Confidence 23466778898876542 33222 23445689999998877663221 13345555543 211 11111 111
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEEcCC----C-eEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEE
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESN----N-EVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACS 371 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~----g-~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~ 371 (729)
.--.+.+||+..++. ...+-++|..+ + +.....+.. .-.| .+.+.| |++++|.+
T Consensus 280 ----~iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVG----KsPH-----GV~vSP---DGkylyVa 338 (635)
T PRK02888 280 ----RIEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVP----KNPH-----GVNTSP---DGKYFIAN 338 (635)
T ss_pred ----HHHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECC----CCcc-----ceEECC---CCCEEEEe
Confidence 012467899844432 24577888776 2 333322211 1111 233443 88888877
Q ss_pred EEECCeEEEEEEECCC
Q 004816 372 YRQNGRSYLGILDDFG 387 (729)
Q Consensus 372 s~~~g~~~ly~~d~~~ 387 (729)
...+....+ +|.+.
T Consensus 339 nklS~tVSV--IDv~k 352 (635)
T PRK02888 339 GKLSPTVTV--IDVRK 352 (635)
T ss_pred CCCCCcEEE--EEChh
Confidence 655554444 45544
No 391
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=95.41 E-value=0.68 Score=50.78 Aligned_cols=82 Identities=10% Similarity=0.011 Sum_probs=49.8
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE---eeeCCCe
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV---LVSGSDF 242 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~---lt~~~~~ 242 (729)
.|++|+..+- .+...|... ...+...+|||||++|+.++.+.. -.||-.--+-..... +......
T Consensus 553 vI~lw~t~~W-~~~~~L~~H----sLTVT~l~FSpdg~~LLsvsRDRt-------~sl~~~~~~~~~e~~fa~~k~HtRI 620 (764)
T KOG1063|consen 553 VIRLWNTANW-LQVQELEGH----SLTVTRLAFSPDGRYLLSVSRDRT-------VSLYEVQEDIKDEFRFACLKAHTRI 620 (764)
T ss_pred EEEEEeccch-hhhheeccc----ceEEEEEEECCCCcEEEEeecCce-------EEeeeeecccchhhhhccccccceE
Confidence 6888887652 233345555 578899999999999999877652 345544211111111 1112223
Q ss_pred eeeeeeCCCCCeEEEEE
Q 004816 243 YAFPRMDPRGERMAWIE 259 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~ 259 (729)
.-...|+||+++++-.+
T Consensus 621 IWdcsW~pde~~FaTaS 637 (764)
T KOG1063|consen 621 IWDCSWSPDEKYFATAS 637 (764)
T ss_pred EEEcccCcccceeEEec
Confidence 44678999999865444
No 392
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=95.39 E-value=0.73 Score=46.90 Aligned_cols=135 Identities=10% Similarity=0.019 Sum_probs=83.5
Q ss_pred CcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc--eEEeee
Q 004816 165 QRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN--IQVLVS 238 (729)
Q Consensus 165 ~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~--~~~lt~ 238 (729)
..|+++...+ |. .++++.. ...+.+..|||.-+.+++++.-+ ..|-++|+..+. ...++.
T Consensus 234 ~~I~lw~~~~--g~W~vd~~Pf~gH----~~SVEDLqWSptE~~vfaScS~D--------gsIrIWDiRs~~~~~~~~~k 299 (440)
T KOG0302|consen 234 KGIHLWEPST--GSWKVDQRPFTGH----TKSVEDLQWSPTEDGVFASCSCD--------GSIRIWDIRSGPKKAAVSTK 299 (440)
T ss_pred cceEeeeecc--CceeecCcccccc----ccchhhhccCCccCceEEeeecC--------ceEEEEEecCCCccceeEee
Confidence 3678877765 32 3344444 45678999999999888887655 467778887762 333333
Q ss_pred -CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCe-eeeEEecCCCCCccccccCceeCCCCc-EEEEE
Q 004816 239 -GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDV-YKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVT 315 (729)
Q Consensus 239 -~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~-~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~ 315 (729)
.....+-..|+-+-..||+-. ++..+.++|+. .-+. .++..+.-+. ..+..+.|+|... .+..+
T Consensus 300 Ah~sDVNVISWnr~~~lLasG~--------DdGt~~iwDLR-~~~~~~pVA~fk~Hk----~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 300 AHNSDVNVISWNRREPLLASGG--------DDGTLSIWDLR-QFKSGQPVATFKYHK----APITSIEWHPHEDSVIAAS 366 (440)
T ss_pred ccCCceeeEEccCCcceeeecC--------CCceEEEEEhh-hccCCCcceeEEecc----CCeeEEEeccccCceEEec
Confidence 233456679998877555433 33458888886 2211 2344555554 5678899999766 44444
Q ss_pred ecCCCceEEEEE
Q 004816 316 DRKNGFWNLHKW 327 (729)
Q Consensus 316 ~~~~g~~~l~~~ 327 (729)
.. ..+..||-+
T Consensus 367 g~-D~QitiWDl 377 (440)
T KOG0302|consen 367 GE-DNQITIWDL 377 (440)
T ss_pred cC-CCcEEEEEe
Confidence 33 345555533
No 393
>PRK13613 lipoprotein LpqB; Provisional
Probab=95.39 E-value=0.78 Score=51.69 Aligned_cols=162 Identities=14% Similarity=0.093 Sum_probs=93.3
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
.+.+++.+++.......||+-.+.++ +. .+.+... .++..|+|+++| +| ++.+..... ...|.+
T Consensus 370 vS~~g~~~A~v~~~~~~l~vg~~~~~-~~~~~~~~~~~~~-----~~Lt~PS~d~~g-~v-Wtvd~~~~~----~~vl~v 437 (599)
T PRK13613 370 VSRDESRAAGISADGDSVYVGSLTPG-ASIGVHSWGVTAD-----GRLTSPSWDGRG-DL-WVVDRDPAD----PRLLWL 437 (599)
T ss_pred EcCCCceEEEEcCCCcEEEEeccCCC-Cccccccceeecc-----CcccCCcCcCCC-CE-EEecCCCCC----ceEEEE
Confidence 44456677887655557888766441 33 2233322 457889999999 33 444332111 122444
Q ss_pred EEcCCCceEEeeeC---CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC--CCC--eeeeE-EecCCCCCcc
Q 004816 226 IALNGQNIQVLVSG---SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGD--VYKRV-CVAGFDPTIV 297 (729)
Q Consensus 226 ~dl~~g~~~~lt~~---~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~--~g~--~~~~~-~~~~~~~~~~ 297 (729)
+.- +|+...+... .......+.|+||-++|++.... ...+|++.-+.. +|. +...+ +..+.
T Consensus 438 ~~~-~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~-----g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----- 506 (599)
T PRK13613 438 LQG-DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKD-----GRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----- 506 (599)
T ss_pred EcC-CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecC-----CCcEEEEEEEEeCCCCcEEeeccEEeccCC-----
Confidence 443 5666544321 12577889999999999987432 235577666552 343 11111 11222
Q ss_pred ccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeE
Q 004816 298 ESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEV 334 (729)
Q Consensus 298 ~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~ 334 (729)
..+..+.|..++.|+.+.....+...++++++++...
T Consensus 507 ~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~ 543 (599)
T PRK13613 507 EDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGSTP 543 (599)
T ss_pred CccceeEEcCCCEEEEEeccCCCCcceEEEecCCcCc
Confidence 2356789999988776544324577899998876543
No 394
>PRK13614 lipoprotein LpqB; Provisional
Probab=95.32 E-value=1.6 Score=48.73 Aligned_cols=161 Identities=16% Similarity=0.111 Sum_probs=91.2
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
.+.++..+++.......||+.... +..+.+... ..+..|+|+++| ++. +..+.. ...|.++..+
T Consensus 350 vS~~g~~~A~~~~~~~~l~~~~~g---~~~~~~~~g-----~~Lt~PS~d~~g-~vW-tv~~g~------~~~vv~~~~~ 413 (573)
T PRK13614 350 ESPVSQTVAFLNGSRTTLYTVSPG---QPARALTSG-----STLTRPSFSPQD-WVW-TAGPGG------NGRIVAYRPT 413 (573)
T ss_pred ecCCCceEEEecCCCcEEEEecCC---CcceeeecC-----CCccCCcccCCC-CEE-EeeCCC------CceEEEEecC
Confidence 444566777775544478877653 555554443 356889999999 444 433321 1356665543
Q ss_pred C-CceE-----Eeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC--CCCeeeeEEecCCC--CCc
Q 004816 230 G-QNIQ-----VLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE--NGDVYKRVCVAGFD--PTI 296 (729)
Q Consensus 230 ~-g~~~-----~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~--~g~~~~~~~~~~~~--~~~ 296 (729)
+ ++.. .+.. ....+...+.|+||-+++.+.... ...+|++.-+.. +|.. ..+..... ..
T Consensus 414 g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~G~P--~~L~~~~~~~~~- 485 (573)
T PRK13614 414 GVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQN-----GKSRVQVAGIVRNEDGTP--RELTAPITLAAD- 485 (573)
T ss_pred CCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeC-----CccEEEEEEEEeCCCCCe--EEccCceecccC-
Confidence 2 2211 1111 112367889999999999987432 234577765552 3432 22221110 00
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
.......|..|+.|+.......+...++++.+..|..+
T Consensus 486 -~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~~~ 523 (573)
T PRK13614 486 -SDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQPQ 523 (573)
T ss_pred -CCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCCcc
Confidence 34567889999887766654245566777777555444
No 395
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.30 E-value=0.35 Score=54.04 Aligned_cols=148 Identities=13% Similarity=0.074 Sum_probs=83.5
Q ss_pred EEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 150 FRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 150 ~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
|.|.+++-+++...++.+-+|++.. .++.--++. ..-+...+++|||+..+.-.-+ +..+.++..
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d--~~Vv~W~Dl----~~lITAvcy~PdGk~avIGt~~---------G~C~fY~t~ 481 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISD--KKVVDWNDL----RDLITAVCYSPDGKGAVIGTFN---------GYCRFYDTE 481 (712)
T ss_pred ecccCCCcEeecccccceEEeecCc--CeeEeehhh----hhhheeEEeccCCceEEEEEec---------cEEEEEEcc
Confidence 5555666555555678888888865 433332332 2345788999999975544332 234444555
Q ss_pred CCceEE---e--ee----CCCeeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 230 GQNIQV---L--VS----GSDFYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 230 ~g~~~~---l--t~----~~~~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
+-+..+ + .. -...++++.+.| +-..|.+++ +.++|.++|.. +..+ +..+.+..-. .+
T Consensus 482 ~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS--------nDSrIRI~d~~-~~~l--v~KfKG~~n~--~S 548 (712)
T KOG0283|consen 482 GLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS--------NDSRIRIYDGR-DKDL--VHKFKGFRNT--SS 548 (712)
T ss_pred CCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEec--------CCCceEEEecc-chhh--hhhhcccccC--Cc
Confidence 433221 1 11 012567777765 333677777 34669999875 3333 3344443211 23
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEE
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKW 327 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~ 327 (729)
-....++.||+ |+..+++ .+-.||.+
T Consensus 549 Q~~Asfs~Dgk~IVs~seD--s~VYiW~~ 575 (712)
T KOG0283|consen 549 QISASFSSDGKHIVSASED--SWVYIWKN 575 (712)
T ss_pred ceeeeEccCCCEEEEeecC--ceEEEEeC
Confidence 34568999999 8777744 34444444
No 396
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=95.28 E-value=0.04 Score=53.80 Aligned_cols=75 Identities=20% Similarity=0.207 Sum_probs=44.8
Q ss_pred CCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHhC-----CCcceEEEEecc
Q 004816 529 YGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALAF-----RDTFKAGASLYG 603 (729)
Q Consensus 529 ~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~~-----~~~~~a~v~~~~ 603 (729)
+||.-.....|.+.....+.. .......|++|+.+.-.-.+++|.+.|||.||.+|..++.. .+++..++...+
T Consensus 43 FRGTd~t~~~W~ed~~~~~~~-~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDg 121 (224)
T PF11187_consen 43 FRGTDDTLVDWKEDFNMSFQD-ETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDG 121 (224)
T ss_pred EECCCCchhhHHHHHHhhcCC-CCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeC
Confidence 455433344455544332221 12333455566554321123569999999999999988862 457888888777
Q ss_pred c
Q 004816 604 V 604 (729)
Q Consensus 604 ~ 604 (729)
.
T Consensus 122 P 122 (224)
T PF11187_consen 122 P 122 (224)
T ss_pred C
Confidence 5
No 397
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.21 E-value=1.5 Score=48.76 Aligned_cols=230 Identities=12% Similarity=0.047 Sum_probs=126.3
Q ss_pred cccCCceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceE
Q 004816 143 QEYGGGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 143 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~ 222 (729)
|......+.++.+.++..+...+.|-+|+.++. ...+.++.++ .-...|-|.++.|+.-..+ +.
T Consensus 372 HR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~-kciRTi~~~y------~l~~~Fvpgd~~Iv~G~k~---------Ge 435 (888)
T KOG0306|consen 372 HRSDVRSLCVSSDSILLASGAGESIKIWNRDTL-KCIRTITCGY------ILASKFVPGDRYIVLGTKN---------GE 435 (888)
T ss_pred chhheeEEEeecCceeeeecCCCcEEEEEccCc-ceeEEecccc------EEEEEecCCCceEEEeccC---------Cc
Confidence 444566788888877777766778999998863 4566777541 2334688988877655442 45
Q ss_pred EEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeee------EEecCCCCC
Q 004816 223 IVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKR------VCVAGFDPT 295 (729)
Q Consensus 223 l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~------~~~~~~~~~ 295 (729)
|-++|+++...-... ...+.....+.+||++..+-.+-|..-.-|+. -++.+ . .|+...+ +.+.-.
T Consensus 436 l~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf--~l~~~-~-~gt~~k~lsl~~~rtLel~--- 508 (888)
T KOG0306|consen 436 LQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDF--KLVVS-V-PGTQKKVLSLKHTRTLELE--- 508 (888)
T ss_pred eEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeE--EEEec-c-CcccceeeeeccceEEecc---
Confidence 777888876543322 23344556788999998876664432212211 11222 1 2332221 122111
Q ss_pred ccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEE
Q 004816 296 IVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 296 ~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~ 374 (729)
..+..+..||||+++.++-- +..-.+|-+| +-+.. .|.... -|.-+ +... .+..++++...
T Consensus 509 --ddvL~v~~Spdgk~LaVsLL-dnTVkVyflD--tlKFflsLYGHk----LPV~s-----mDIS----~DSklivTgSA 570 (888)
T KOG0306|consen 509 --DDVLCVSVSPDGKLLAVSLL-DNTVKVYFLD--TLKFFLSLYGHK----LPVLS-----MDIS----PDSKLIVTGSA 570 (888)
T ss_pred --ccEEEEEEcCCCcEEEEEec-cCeEEEEEec--ceeeeeeecccc----cceeE-----Eecc----CCcCeEEeccC
Confidence 23456789999996556555 4556677665 32221 111111 12111 1111 33446667777
Q ss_pred CCeEEEEEEECCCCc-eEeeccCCcceEEe-eeeCCEEEEEEe
Q 004816 375 NGRSYLGILDDFGHS-LSLLDIPFTDIDNI-TLGNDCLFVEGA 415 (729)
Q Consensus 375 ~g~~~ly~~d~~~g~-~~~lt~~~~~v~~~-~~~~~~~~~~~~ 415 (729)
|-...+|=+|. |. -+.+-...++|..+ ..+...++|.++
T Consensus 571 DKnVKiWGLdF--GDCHKS~fAHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 571 DKNVKIWGLDF--GDCHKSFFAHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred CCceEEecccc--chhhhhhhcccCceeEEEEcccceeEEEec
Confidence 77778886654 33 23444455667776 455444444444
No 398
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.14 E-value=3.2 Score=41.37 Aligned_cols=201 Identities=9% Similarity=-0.022 Sum_probs=97.1
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIA 227 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~d 227 (729)
-.|.++.+.++-+-+...+|.-++..| .-.+.++-.. -.......+.-+|++ +.+.+.. ..||.+.
T Consensus 91 LTynp~~rtLFav~n~p~~iVElt~~G--dlirtiPL~g---~~DpE~Ieyig~n~f-vi~dER~--------~~l~~~~ 156 (316)
T COG3204 91 LTYNPDTRTLFAVTNKPAAIVELTKEG--DLIRTIPLTG---FSDPETIEYIGGNQF-VIVDERD--------RALYLFT 156 (316)
T ss_pred eeeCCCcceEEEecCCCceEEEEecCC--ceEEEecccc---cCChhHeEEecCCEE-EEEehhc--------ceEEEEE
Confidence 345555556555555556888888875 5555544321 011233456666664 3333332 4566555
Q ss_pred cCCCc-eE-----Eee--e--C-CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 228 LNGQN-IQ-----VLV--S--G-SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 228 l~~g~-~~-----~lt--~--~-~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
++.+. .. .++ . . .....+.+|+|..+++.+..-..+ ..||.++-..+.-..........+.++
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P------~~I~~~~~~~~~l~~~~~~~~~~~~~~ 230 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP------IGIFEVTQSPSSLSVHASLDPTADRDL 230 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC------cEEEEEecCCcccccccccCcccccce
Confidence 44331 11 111 1 1 223467899999999988774333 347777643111100111111111111
Q ss_pred c-ccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccccCcceeeeeecCCCCEEEEEE
Q 004816 297 V-ESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 297 ~-~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
. ..++...+.+... |++.++. ...|..+|.++.-...+. .+...... =.+....+... +.+.||..+
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~E---Sr~l~Evd~~G~~~~~lsL~~g~~gL~~--dipqaEGiamD----d~g~lYIvS 301 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDE---SRRLLEVDLSGEVIELLSLTKGNHGLSS--DIPQAEGIAMD----DDGNLYIVS 301 (316)
T ss_pred EeeccccceecCCCCcEEEEecC---CceEEEEecCCCeeeeEEeccCCCCCcc--cCCCcceeEEC----CCCCEEEEe
Confidence 0 2345566765544 7777765 245667777655333332 22211111 11122223332 667788888
Q ss_pred EECCe
Q 004816 373 RQNGR 377 (729)
Q Consensus 373 ~~~g~ 377 (729)
+.+..
T Consensus 302 EPnlf 306 (316)
T COG3204 302 EPNLF 306 (316)
T ss_pred cCCcc
Confidence 76543
No 399
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=95.13 E-value=5.5 Score=42.38 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=52.6
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceE
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWN 323 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~ 323 (729)
...|.|.| .||.-. ......++|.+ +... +.+-.+ . ..++-++++|||. |+..+.+ +.-.
T Consensus 412 ~~~fhpsg-~va~Gt--------~~G~w~V~d~e-~~~l--v~~~~d-~----~~ls~v~ysp~G~~lAvgs~d--~~iy 472 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGT--------ATGRWFVLDTE-TQDL--VTIHTD-N----EQLSVVRYSPDGAFLAVGSHD--NHIY 472 (626)
T ss_pred EeeccCcc-eEEEee--------ccceEEEEecc-ccee--EEEEec-C----CceEEEEEcCCCCEEEEecCC--CeEE
Confidence 35677887 565433 23447788877 4333 222222 2 4567789999999 6655554 7778
Q ss_pred EEEEEcCCCeEEEeeccC-ccccCCcccc
Q 004816 324 LHKWIESNNEVLAIYSLD-AEFSRPLWVF 351 (729)
Q Consensus 324 l~~~d~~~g~~~~l~~~~-~~~~~~~w~~ 351 (729)
||+++.++.+..++-.-. .-+....|+.
T Consensus 473 iy~Vs~~g~~y~r~~k~~gs~ithLDwS~ 501 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSGSPITHLDWSS 501 (626)
T ss_pred EEEECCCCcEEEEeeeecCceeEEeeecC
Confidence 889888776665554211 2333456664
No 400
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.99 E-value=0.72 Score=47.46 Aligned_cols=105 Identities=10% Similarity=0.006 Sum_probs=64.5
Q ss_pred EEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 222 EIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
.|-.+|..++..++-.+..+..++...|+||..|.-.+.+ ..|-++|+. +.++ ..++....-.......
T Consensus 323 kvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRD--------dtl~viDlR-t~eI--~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRD--------DTLKVIDLR-TKEI--RQTFSAEGFKCASDWT 391 (459)
T ss_pred ceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCC--------Cceeeeecc-cccE--EEEeeccccccccccc
Confidence 3666776666666555666678889999999998755422 227778876 4443 2222211100002246
Q ss_pred CceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeecc
Q 004816 302 EPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSL 340 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~ 340 (729)
.+.|||||+++..... ...||+++..+|+...+...
T Consensus 392 rvvfSpd~~YvaAGS~---dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSA---DGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred eeEECCCCceeeeccC---CCcEEEEEccCceEEEEecc
Confidence 7899999984433322 24688888889988776643
No 401
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.98 E-value=0.093 Score=52.80 Aligned_cols=153 Identities=10% Similarity=0.017 Sum_probs=88.9
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
....+++|--..|+.++..+ ..|+++|+-.+.+. .++-++ ..+..+|+| .- .-|+..++. ..
T Consensus 190 i~svkfNpvETsILas~~sD--------rsIvLyD~R~~~Pl~KVi~~m-RTN~IswnP-ea-fnF~~a~ED------~n 252 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASD--------RSIVLYDLRQASPLKKVILTM-RTNTICWNP-EA-FNFVAANED------HN 252 (433)
T ss_pred eeEEecCCCcchheeeeccC--------CceEEEecccCCccceeeeec-cccceecCc-cc-cceeecccc------cc
Confidence 34567888777777776433 46999999877653 333333 346789999 34 345553432 34
Q ss_pred EEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCc
Q 004816 272 LWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPL 348 (729)
Q Consensus 272 l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~ 348 (729)
||.+|.. .=. .+.....+.- ..+..+.|||-|+ ++-.+-+ ..-+|| ....+..+.+. .--..+....
T Consensus 253 lY~~DmR-~l~-~p~~v~~dhv----sAV~dVdfsptG~EfvsgsyD--ksIRIf--~~~~~~SRdiYhtkRMq~V~~Vk 322 (433)
T KOG0268|consen 253 LYTYDMR-NLS-RPLNVHKDHV----SAVMDVDFSPTGQEFVSGSYD--KSIRIF--PVNHGHSRDIYHTKRMQHVFCVK 322 (433)
T ss_pred ceehhhh-hhc-ccchhhcccc----eeEEEeccCCCcchhcccccc--ceEEEe--ecCCCcchhhhhHhhhheeeEEE
Confidence 9999876 211 2233334443 4556788999999 6544333 334455 44455544443 1111222345
Q ss_pred ccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 349 WVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 349 w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
|+. | ..++++..+++..+||.-..
T Consensus 323 ~S~------------D-skyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 323 YSM------------D-SKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred Eec------------c-ccEEEecCCCcceeeeecch
Confidence 553 4 44666777788889997654
No 402
>PRK13615 lipoprotein LpqB; Provisional
Probab=94.98 E-value=1.3 Score=49.29 Aligned_cols=156 Identities=10% Similarity=0.031 Sum_probs=88.7
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
..+.++..+++... ++.|++.... +..+.+... ..+..|+|+++| ++..+.+.. ...+....
T Consensus 340 avS~dg~~~A~v~~-~~~l~vg~~~---~~~~~~~~~-----~~Lt~PS~d~~g-~vWtv~~g~-------~~~l~~~~- 401 (557)
T PRK13615 340 TLSADGRQAAVRNA-SGVWSVGDGD---RDAVLLDTR-----PGLVAPSLDAQG-YVWSTPASD-------PRGLVAWG- 401 (557)
T ss_pred eEcCCCceEEEEcC-CceEEEecCC---CcceeeccC-----CccccCcCcCCC-CEEEEeCCC-------ceEEEEec-
Confidence 34445667777754 4466666544 344554433 356889999999 444333222 12333333
Q ss_pred CCCceEEeee---CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEE------ecCCCCCcccc
Q 004816 229 NGQNIQVLVS---GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVC------VAGFDPTIVES 299 (729)
Q Consensus 229 ~~g~~~~lt~---~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~------~~~~~~~~~~~ 299 (729)
.+|+...+.- ....+...+.|+||-+++.+.... ...+|++.-+..++. .+..+ +.... ..
T Consensus 402 ~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~-----g~~~V~va~V~R~~~-~P~~L~~~p~~l~~~l----~~ 471 (557)
T PRK13615 402 PDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETG-----AGPQLLVASIVRDGG-VPTSLTTTPLELLASP----GT 471 (557)
T ss_pred CCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecC-----CCCEEEEEEEEeCCC-cceEeeeccEEcccCc----Cc
Confidence 3355544432 224577889999999999987332 235677766553222 11222 11111 34
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCC
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNN 332 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g 332 (729)
.....|..|++|+.+.....+..+++++.+.+.
T Consensus 472 v~sl~W~~~~~laVl~~~~~~~~~v~~v~v~g~ 504 (557)
T PRK13615 472 PLDATWVDELDVATLTLAPDGERQVELHQVGGP 504 (557)
T ss_pred ceeeEEcCCCEEEEEeccCCCCceEEEEECCCc
Confidence 567889999987777643234466777777654
No 403
>KOG4328 consensus WD40 protein [Function unknown]
Probab=94.97 E-value=5.7 Score=41.73 Aligned_cols=196 Identities=12% Similarity=0.063 Sum_probs=102.7
Q ss_pred CccCceEEcC-CC-cEEEEeecCCCCCceEEEEcCCCCCCCC--cccCCCCCcccccccccCCceEEEECCEEEEEECCC
Q 004816 89 KRLGGTAVDG-HG-RLIWLESRPTEAGRGVLVKEPAKAGDEP--SDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKD 164 (729)
Q Consensus 89 ~~~~~~~~~p-g~-~~~~~~~~~~~~~~~~l~~~~~~~~g~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 164 (729)
.++..++|.| .. .+.-+- +..|+.-+|..+....-.. ..-++.... -++..|++.+..-+++...+
T Consensus 187 ~Rit~l~fHPt~~~~lva~G---dK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~-------Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVG---DKGGQVGLWNFGTQEKDKDGVYLFTPHSGP-------VSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cceEEEEecccCcceEEEEc---cCCCcEEEEecCCCCCccCceEEeccCCcc-------ccceEecCCChhheeeeccC
Confidence 4556778888 43 333322 2467777787631100011 111111101 12344666666556677778
Q ss_pred CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC--ceEEeeeCCCe
Q 004816 165 QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ--NIQVLVSGSDF 242 (729)
Q Consensus 165 ~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g--~~~~lt~~~~~ 242 (729)
|.|-..|+.+ +..+.+-..+. ....+.+..++.+..-++|...- ..+-++|+.++ +...+.-....
T Consensus 257 GtiR~~D~~~--~i~e~v~s~~~-d~~~fs~~d~~~e~~~vl~~~~~---------G~f~~iD~R~~~s~~~~~~lh~kK 324 (498)
T KOG4328|consen 257 GTIRLQDFEG--NISEEVLSLDT-DNIWFSSLDFSAESRSVLFGDNV---------GNFNVIDLRTDGSEYENLRLHKKK 324 (498)
T ss_pred ceeeeeeecc--hhhHHHhhcCc-cceeeeeccccCCCccEEEeecc---------cceEEEEeecCCccchhhhhhhcc
Confidence 8899999987 44333332211 13556777788877777766432 23445555443 23333333336
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-CCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 317 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~ 317 (729)
..+..+.|--.++.-+...+ ..+.++|+.. .++..+..-..... ..+....|||+|- |+.+..+
T Consensus 325 I~sv~~NP~~p~~laT~s~D-------~T~kIWD~R~l~~K~sp~lst~~Hr----rsV~sAyFSPs~gtl~TT~~D 390 (498)
T KOG4328|consen 325 ITSVALNPVCPWFLATASLD-------QTAKIWDLRQLRGKASPFLSTLPHR----RSVNSAYFSPSGGTLLTTCQD 390 (498)
T ss_pred cceeecCCCCchheeecccC-------cceeeeehhhhcCCCCcceeccccc----ceeeeeEEcCCCCceEeeccC
Confidence 67788888776654444222 2255666641 12222212222333 6778889999987 7666554
No 404
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.90 E-value=0.38 Score=47.48 Aligned_cols=97 Identities=16% Similarity=0.268 Sum_probs=59.3
Q ss_pred CCCeeeeeeeCCCCC-eEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 239 GSDFYAFPRMDPRGE-RMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~-~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
..+..+..+|||.-. .|+-.+|| .++.+++++.+|..... .....+ ..+-..+|+.||..+|...-
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD--------~tVR~wevq~~g~~~~k-a~~~~~----~PvL~v~WsddgskVf~g~~ 92 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWD--------GTVRIWEVQNSGQLVPK-AQQSHD----GPVLDVCWSDDGSKVFSGGC 92 (347)
T ss_pred cccchheeEeccccCceEEecccC--------CceEEEEEecCCcccch-hhhccC----CCeEEEEEccCCceEEeecc
Confidence 345667789999433 33344443 23666777744554331 222222 44566799999997776655
Q ss_pred CCCceEEEEEEcCCCeEEEeeccCccccCCcccc
Q 004816 318 KNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVF 351 (729)
Q Consensus 318 ~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~ 351 (729)
.+... ++|+.+++..++-..++.+..-.|..
T Consensus 93 -Dk~~k--~wDL~S~Q~~~v~~Hd~pvkt~~wv~ 123 (347)
T KOG0647|consen 93 -DKQAK--LWDLASGQVSQVAAHDAPVKTCHWVP 123 (347)
T ss_pred -CCceE--EEEccCCCeeeeeecccceeEEEEec
Confidence 45444 46899999888876665555556664
No 405
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.66 Score=47.85 Aligned_cols=162 Identities=10% Similarity=-0.024 Sum_probs=91.7
Q ss_pred CCCCcCCHHHHhccCCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEE
Q 004816 74 SWKSPLTADVVSGASKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRI 152 (729)
Q Consensus 74 ~~~~~lt~e~i~~~~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 152 (729)
.|++-.|+-..-+-.+.+.++.+|| |+.+..+.. + ...+|..+.+ .....++|.+.+ +.+..+.|..
T Consensus 172 ~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~---d--~~~VW~~~~g--~~~a~~t~~~k~-----~~~~~cRF~~ 239 (398)
T KOG0771|consen 172 EWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA---D--SARVWSVNTG--AALARKTPFSKD-----EMFSSCRFSV 239 (398)
T ss_pred ecCcchhhhhhHhhcCccccceeCCCCcEEEEecC---C--ceEEEEeccC--chhhhcCCcccc-----hhhhhceecc
Confidence 3566556544444446789999999 888888764 2 3457876654 345556654322 2334455665
Q ss_pred ECC---EEEEEECC-CCcEEEEeCC--CCC--CCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEE
Q 004816 153 FGD---TVIFSNYK-DQRLYKHSID--SKD--SSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIV 224 (729)
Q Consensus 153 ~~~---~i~~~~~~-~~~l~~~d~~--~~~--~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~ 224 (729)
++. -.++.... .+.+-.+++. .++ ...++.... .........|+||++++.-..+ ..+-
T Consensus 240 d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~----~~siSsl~VS~dGkf~AlGT~d---------GsVa 306 (398)
T KOG0771|consen 240 DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR----FKSISSLAVSDDGKFLALGTMD---------GSVA 306 (398)
T ss_pred cCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc----cCcceeEEEcCCCcEEEEeccC---------CcEE
Confidence 542 12222222 2233333321 100 123333332 1345778899999987655432 3466
Q ss_pred EEEcCCCceEEeee--CCCeeeeeeeCCCCCeEEEEEe
Q 004816 225 AIALNGQNIQVLVS--GSDFYAFPRMDPRGERMAWIEW 260 (729)
Q Consensus 225 ~~dl~~g~~~~lt~--~~~~~~~~~~SPDG~~la~~~~ 260 (729)
+++..+-+.-++.+ ...+.++..|+||.++++=++.
T Consensus 307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs 344 (398)
T KOG0771|consen 307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS 344 (398)
T ss_pred EEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc
Confidence 67765544444443 3347889999999999887663
No 406
>PRK13615 lipoprotein LpqB; Provisional
Probab=94.86 E-value=2.1 Score=47.75 Aligned_cols=167 Identities=10% Similarity=0.048 Sum_probs=89.9
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELW 273 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~ 273 (729)
..++.|+||+.++++... ..|++-... +..+.+..+ .....|.|+++| +| |+..+.. ...+.
T Consensus 337 ~s~avS~dg~~~A~v~~~---------~~l~vg~~~-~~~~~~~~~-~~Lt~PS~d~~g-~v-Wtv~~g~-----~~~l~ 398 (557)
T PRK13615 337 DAATLSADGRQAAVRNAS---------GVWSVGDGD-RDAVLLDTR-PGLVAPSLDAQG-YV-WSTPASD-----PRGLV 398 (557)
T ss_pred ccceEcCCCceEEEEcCC---------ceEEEecCC-CcceeeccC-CccccCcCcCCC-CE-EEEeCCC-----ceEEE
Confidence 567899999998888331 346655443 445555443 356789999999 55 4442221 12222
Q ss_pred EEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE--EEEcCCCeEEEe-ec------cCcc
Q 004816 274 VGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH--KWIESNNEVLAI-YS------LDAE 343 (729)
Q Consensus 274 ~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~--~~d~~~g~~~~l-~~------~~~~ 343 (729)
. ...+|+...+. .....+ ..+..++.|+||- ++++... .+..+|+ .+--.++..+.| +. ....
T Consensus 399 ~--~~~~G~~~~v~--v~~~~~--~~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~ 471 (557)
T PRK13615 399 A--WGPDGVGHPVA--VSWTAT--GRVVSLEVARDGARVLVQLET-GAGPQLLVASIVRDGGVPTSLTTTPLELLASPGT 471 (557)
T ss_pred E--ecCCCceEEee--ccccCC--CeeEEEEeCCCccEEEEEEec-CCCCEEEEEEEEeCCCcceEeeeccEEcccCcCc
Confidence 2 22245542221 111101 4577889999998 7777654 4444444 233345545555 31 1112
Q ss_pred ccCCcccccCcceeeeeecCCCCEEEEEE-EECCeEEEEEEECCCCceEeeccCCcc
Q 004816 344 FSRPLWVFGINSYEIIQSHGEKNLIACSY-RQNGRSYLGILDDFGHSLSLLDIPFTD 399 (729)
Q Consensus 344 ~~~~~w~~~~~~~~~l~~~~~~~~l~~~s-~~~g~~~ly~~d~~~g~~~~lt~~~~~ 399 (729)
..+..|. ++..|++.. ...+...++++.+.+...+ +......
T Consensus 472 v~sl~W~-------------~~~~laVl~~~~~~~~~v~~v~v~g~~~~-~~~~~~~ 514 (557)
T PRK13615 472 PLDATWV-------------DELDVATLTLAPDGERQVELHQVGGPSKD-MGSAADG 514 (557)
T ss_pred ceeeEEc-------------CCCEEEEEeccCCCCceEEEEECCCcccc-cCCcCCc
Confidence 2333454 455565555 3455567888888755433 4444333
No 407
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=94.86 E-value=1.6 Score=44.58 Aligned_cols=127 Identities=11% Similarity=0.102 Sum_probs=71.4
Q ss_pred eeeecceecCCC----CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC--------------------Ceeeee
Q 004816 191 VSYADGIFDPRF----NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--------------------DFYAFP 246 (729)
Q Consensus 191 ~~~~~~~~SPdG----~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--------------------~~~~~~ 246 (729)
..+.++++.... +..+|+.+... ..|.++|+.+++.+++..+. +...+.
T Consensus 61 s~lndl~VD~~~~~~~~~~aYItD~~~-------~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gi 133 (287)
T PF03022_consen 61 SFLNDLVVDVRDGNCDDGFAYITDSGG-------PGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGI 133 (287)
T ss_dssp GGEEEEEEECTTTTS-SEEEEEEETTT-------CEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEE
T ss_pred cccceEEEEccCCCCcceEEEEeCCCc-------CcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCcccc
Confidence 445777766622 36789887653 47999999999888776421 112233
Q ss_pred ee---CCCCCeEEEEEecCCCCCCCCcEEEEEEec--CCCCeee-------eEEecCCCCCccccccCceeCCCCcEEEE
Q 004816 247 RM---DPRGERMAWIEWHHPNMPWDKAELWVGYIS--ENGDVYK-------RVCVAGFDPTIVESPTEPKWSSKGELFFV 314 (729)
Q Consensus 247 ~~---SPDG~~la~~~~~~~~~~~~~~~l~~~d~~--~~g~~~~-------~~~~~~~~~~~~~~~~~~~wspDG~l~~~ 314 (729)
+. +|||++|+|... ....+|.++.+ .+..... ...+.... ........+++|.|||.
T Consensus 134 al~~~~~d~r~LYf~~l-------ss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~----~~s~g~~~D~~G~ly~~ 202 (287)
T PF03022_consen 134 ALSPISPDGRWLYFHPL-------SSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG----SQSDGMAIDPNGNLYFT 202 (287)
T ss_dssp EE-TTSTTS-EEEEEET-------T-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-------SECEEEEETTTEEEEE
T ss_pred ccCCCCCCccEEEEEeC-------CCCcEEEEEHHHhhCccccccccccccceeccccC----CCCceEEECCCCcEEEe
Confidence 34 459999999873 23458887754 1222111 11111110 11234567777766665
Q ss_pred EecCCCceEEEEEEcCC----CeEEEee
Q 004816 315 TDRKNGFWNLHKWIESN----NEVLAIY 338 (729)
Q Consensus 315 ~~~~~g~~~l~~~d~~~----g~~~~l~ 338 (729)
-- ....|+++++.+ .+...|.
T Consensus 203 ~~---~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 203 DV---EQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp EC---CCTEEEEEETTTSB-GCCEEEEE
T ss_pred cC---CCCeEEEEeCCCCcCccchheeE
Confidence 43 346799999876 3444454
No 408
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.86 E-value=8.2 Score=42.97 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=33.1
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCcc-ccccCceeC----CCCc---EEEEEecCCCceEEEEEEcCCCeEE
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIV-ESPTEPKWS----SKGE---LFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~~ws----pDG~---l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
..|+.+|++ +|+..+.......+ .|. .....+... -||. +++.... + ..|+.+|+++|+..
T Consensus 256 ~~l~Ald~~-tG~~~W~~~~~~~~-~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~-~--G~l~ald~~tG~~~ 324 (488)
T cd00216 256 DSIVALDAD-TGKVKWFYQTTPHD-LWDYDGPNQPSLADIKPKDGKPVPAIVHAPK-N--GFFYVLDRTTGKLI 324 (488)
T ss_pred eeEEEEcCC-CCCEEEEeeCCCCC-CcccccCCCCeEEeccccCCCeeEEEEEECC-C--ceEEEEECCCCcEe
Confidence 479999998 89876654332221 110 011122222 2343 4555443 3 35899999998754
No 409
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.85 E-value=3.2 Score=39.71 Aligned_cols=82 Identities=7% Similarity=0.005 Sum_probs=51.0
Q ss_pred CCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCC
Q 004816 163 KDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGS 240 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~ 240 (729)
.+..|-+|++.. |.. +.-... +..+.|...+-|+.+++-.-.+ ..++++|.++|+.-+ +-...
T Consensus 37 sdrtvrLWNp~r--g~liktYsgh----G~EVlD~~~s~Dnskf~s~GgD---------k~v~vwDV~TGkv~Rr~rgH~ 101 (307)
T KOG0316|consen 37 SDRTVRLWNPLR--GALIKTYSGH----GHEVLDAALSSDNSKFASCGGD---------KAVQVWDVNTGKVDRRFRGHL 101 (307)
T ss_pred CCceEEeecccc--cceeeeecCC----CceeeeccccccccccccCCCC---------ceEEEEEcccCeeeeeccccc
Confidence 345677888765 332 222222 5677888888898875433222 468899999998644 43344
Q ss_pred CeeeeeeeCCCCCeEEEEE
Q 004816 241 DFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~ 259 (729)
+..+..+|..+..-|+-.+
T Consensus 102 aqVNtV~fNeesSVv~Sgs 120 (307)
T KOG0316|consen 102 AQVNTVRFNEESSVVASGS 120 (307)
T ss_pred ceeeEEEecCcceEEEecc
Confidence 5567778887766544333
No 410
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.62 Score=48.23 Aligned_cols=226 Identities=13% Similarity=0.114 Sum_probs=128.8
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKAD 569 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 569 (729)
...|+|+++... +............+.+.||.++.+-..-.. ..................+..|.+....|
T Consensus 37 s~k~Iv~~~gWa--g~~~r~l~ky~~~Yq~~g~~~~~~tap~~~-------~~~~~s~~~~sl~~~~~~l~~L~~~~~~~ 107 (350)
T KOG2521|consen 37 SEKPIVVLLGWA--GAIDRNLMKYSKIYQDKGYIVVRITAPCPS-------VFLSASRRILSLSLASTRLSELLSDYNSD 107 (350)
T ss_pred ccccEEEEeeec--cccchhHHHHHHHHhcCCceEEEecCcccc-------cccccccccchhhHHHHHHHHHhhhccCC
Confidence 334777777543 233334455677778899999877654211 01111122233455556666666665688
Q ss_pred CCcEEEEEcChHHHHHHHHH---h--C-CC---cceEEEEeccc------cChhHHhhhc--chhhhhhhhhh-------
Q 004816 570 EKRLCITGGSAGGYTTLAAL---A--F-RD---TFKAGASLYGV------ADLSMLRAET--HKFESRYIDNL------- 625 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~---~--~-~~---~~~a~v~~~~~------~d~~~~~~~~--~~~~~~~~~~~------- 625 (729)
+.++.+.=+|+||.+.+... . + |. .+.+.+..+.. .+........ ......+....
T Consensus 108 ~~pi~fh~FS~ng~~~~~si~~~~~~~~~~~~~~~~~~~fdS~p~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~~ 187 (350)
T KOG2521|consen 108 PCPIIFHVFSGNGVRLMYSISLQLIKHEPKAAQLSGGIIFDSAPARSSPVQLGWAVSFSSPPDDYVARWARLNYHITLLT 187 (350)
T ss_pred cCceEEEEecCCceeehHHHHHHHhhcCchhHhhcCCceEeccccccchhhhcceeccccCchhhHHHHHhcCeEEEEEE
Confidence 99999999999997665443 2 2 21 22323322211 1111000000 00000000000
Q ss_pred -cCC---h----hhhhhcCcc----------cccCCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCC
Q 004816 626 -VGS---E----KDYYEKSPI----------NFVDKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQ 687 (729)
Q Consensus 626 -~~~---~----~~~~~~sp~----------~~~~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~g 687 (729)
... . ......+.. ........+.|.+.+..|.++|..+-+++.+..+..|..++..-+.+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~ly~~s~~d~v~~~~~ie~f~~~~~~~g~~v~s~~~~ds~ 267 (350)
T KOG2521|consen 188 MAGNEGGAYLLGPLAEKISMSRKYHFLDRYEEQRNELPWNQLYLYSDNDDVLPADEIEKFIALRREKGVNVKSVKFKDSE 267 (350)
T ss_pred eeecccchhhhhhhhhccccccchHHHHHHHhhhhcccccceeecCCccccccHHHHHHHHHHHHhcCceEEEeeccCcc
Confidence 000 0 000000000 0011124577888899999999999999999999999999999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHhCCCCCCCCCCcee
Q 004816 688 HGFRKAENIKFTLEQQMVFFARVVGHFDVADEIIPIK 724 (729)
Q Consensus 688 H~~~~~~~~~~~~~~~~~fl~~~l~~~~~~~~~~~~~ 724 (729)
|.-.-......+.+...+|++..............++
T Consensus 268 H~~h~r~~p~~y~~~~~~Fl~~~~~~~~~~~~~~~~~ 304 (350)
T KOG2521|consen 268 HVAHFRSFPKTYLKKCSEFLRSVISSYNLKNRILGIR 304 (350)
T ss_pred ceeeeccCcHHHHHHHHHHHHhcccccCCccCcccee
Confidence 9866666778999999999999987554443333333
No 411
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=0.21 Score=57.75 Aligned_cols=234 Identities=9% Similarity=0.008 Sum_probs=124.1
Q ss_pred EEEEECCCCcEEEEeCCC--CCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE
Q 004816 157 VIFSNYKDQRLYKHSIDS--KDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ 234 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~--~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~ 234 (729)
|+.-...+|.|-+|+.+. .+++...|.... .....+....|+|...-+.....++ ++|+++|+.. -..
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~-~h~G~V~gLDfN~~q~nlLASGa~~--------geI~iWDlnn-~~t 151 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKS-KHTGPVLGLDFNPFQGNLLASGADD--------GEILIWDLNK-PET 151 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhc-ccCCceeeeeccccCCceeeccCCC--------CcEEEeccCC-cCC
Confidence 555556778888888753 103333333221 1123455677999887566554443 6799999975 223
Q ss_pred EeeeC----CCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc
Q 004816 235 VLVSG----SDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE 310 (729)
Q Consensus 235 ~lt~~----~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~ 310 (729)
..+.+ .+.....+|.-.-++|.-.. .. ....-++|+.. .+ .+.-+...... ...+.+.|.||..
T Consensus 152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~-s~------sg~~~iWDlr~-~~--pii~ls~~~~~--~~~S~l~WhP~~a 219 (1049)
T KOG0307|consen 152 PFTPGSQAPPSEIKCLSWNRKVSHILASG-SP------SGRAVIWDLRK-KK--PIIKLSDTPGR--MHCSVLAWHPDHA 219 (1049)
T ss_pred CCCCCCCCCcccceEeccchhhhHHhhcc-CC------CCCceeccccC-CC--cccccccCCCc--cceeeeeeCCCCc
Confidence 33332 12233445654444442221 11 22356667762 22 12222222111 2356789999986
Q ss_pred --EEEEEecCCCceEEEEEEcC--CCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 311 --LFFVTDRKNGFWNLHKWIES--NNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 311 --l~~~~~~~~g~~~l~~~d~~--~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
++..+++ +..-.|-.+|+. +.-.+.++.....+-...|.+ .+.++++++.+|++ ++..+.+
T Consensus 220 Tql~~As~d-d~~PviqlWDlR~assP~k~~~~H~~GilslsWc~------------~D~~lllSsgkD~~--ii~wN~~ 284 (1049)
T KOG0307|consen 220 TQLLVASGD-DSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP------------QDPRLLLSSGKDNR--IICWNPN 284 (1049)
T ss_pred eeeeeecCC-CCCceeEeecccccCCchhhhcccccceeeeccCC------------CCchhhhcccCCCC--eeEecCC
Confidence 5555555 444455556643 222334444455555677876 55567778777774 5555787
Q ss_pred CCceE-eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 387 GHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 387 ~g~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
+|++- .+......+..+ +.+..--++..++-++.-+||-+.
T Consensus 285 tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 285 TGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ 327 (1049)
T ss_pred CceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence 87753 444433334444 444444455555566666666553
No 412
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=0.35 Score=49.74 Aligned_cols=92 Identities=14% Similarity=0.015 Sum_probs=52.2
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEE
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAEL 272 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l 272 (729)
.-+++++||..|+....+ ..|.+++..+ ..+..............|||||+.|++++.+ ..
T Consensus 148 k~vaf~~~gs~latgg~d---------g~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d---------~~ 209 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTD---------GTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD---------SA 209 (398)
T ss_pred eEEEEcCCCCEeeecccc---------ceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC---------ce
Confidence 345688888876655433 3455556222 1111111223445667899999999999843 25
Q ss_pred EEEEecCCCCeeeeEEe-cCCCCCccccccCceeCCCC
Q 004816 273 WVGYISENGDVYKRVCV-AGFDPTIVESPTEPKWSSKG 309 (729)
Q Consensus 273 ~~~d~~~~g~~~~~~~~-~~~~~~~~~~~~~~~wspDG 309 (729)
.++++. +|.. ..+.. .+.+ ..+...+|+.|+
T Consensus 210 ~VW~~~-~g~~-~a~~t~~~k~----~~~~~cRF~~d~ 241 (398)
T KOG0771|consen 210 RVWSVN-TGAA-LARKTPFSKD----EMFSSCRFSVDN 241 (398)
T ss_pred EEEEec-cCch-hhhcCCcccc----hhhhhceecccC
Confidence 667777 5632 11222 2222 556677888877
No 413
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.67 E-value=0.11 Score=52.73 Aligned_cols=126 Identities=18% Similarity=0.198 Sum_probs=79.0
Q ss_pred eeccCCCeEEEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccchhhhHHHhhC---C------cEEEEecCCCCC
Q 004816 463 FPTEVPGQKAYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILNLSIQYWTSR---G------WAFVDVNYGGST 533 (729)
Q Consensus 463 ~~~~~dG~~l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~---G------~~v~~~d~rGs~ 533 (729)
+++...|..++.....|+... +.++.--++++||.|++. ..|...+..|..- | |.|++|-.+|
T Consensus 127 ykTeIeGL~iHFlhvk~p~~k----~~k~v~PlLl~HGwPGsv--~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPG-- 198 (469)
T KOG2565|consen 127 YKTEIEGLKIHFLHVKPPQKK----KKKKVKPLLLLHGWPGSV--REFYKFIPLLTDPKRHGNESDYAFEVIAPSLPG-- 198 (469)
T ss_pred hhhhhcceeEEEEEecCCccc----cCCcccceEEecCCCchH--HHHHhhhhhhcCccccCCccceeEEEeccCCCC--
Confidence 344447889998888876521 234433477789998764 3333344555443 3 7799999975
Q ss_pred CCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEecc
Q 004816 534 GYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYG 603 (729)
Q Consensus 534 g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~ 603 (729)
||.+ +... ..| .....+..++.-|.-+ +.-++..|-|.-+|..++..++. +|+.+.+.-+..+
T Consensus 199 -ygwS--d~~s-k~G-Fn~~a~ArvmrkLMlR--Lg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm~ 262 (469)
T KOG2565|consen 199 -YGWS--DAPS-KTG-FNAAATARVMRKLMLR--LGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNMC 262 (469)
T ss_pred -cccC--cCCc-cCC-ccHHHHHHHHHHHHHH--hCcceeEeecCchHHHHHHHHHhhcchhhhHhhhccc
Confidence 4432 1111 112 1234455555544444 23478999999999999999998 9998877655443
No 414
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=94.61 E-value=2 Score=42.34 Aligned_cols=153 Identities=9% Similarity=0.008 Sum_probs=88.5
Q ss_pred ceEEEE--CCEEEEEECCCCcEEEEeCCCCCC----CCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcce
Q 004816 148 GAFRIF--GDTVIFSNYKDQRLYKHSIDSKDS----SPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTT 221 (729)
Q Consensus 148 ~~~~~~--~~~i~~~~~~~~~l~~~d~~~~~~----~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~ 221 (729)
.+|.|. +-.++-++.-+..--+||+.+ + ..+||-.. ...+.|.+|+.+|..++.+...+ +
T Consensus 154 TSFDWne~dp~~igtSSiDTTCTiWdie~--~~~~~vkTQLIAH----DKEV~DIaf~~~s~~~FASvgaD--------G 219 (364)
T KOG0290|consen 154 TSFDWNEVDPNLIGTSSIDTTCTIWDIET--GVSGTVKTQLIAH----DKEVYDIAFLKGSRDVFASVGAD--------G 219 (364)
T ss_pred cccccccCCcceeEeecccCeEEEEEEee--ccccceeeEEEec----CcceeEEEeccCccceEEEecCC--------C
Confidence 445553 224455555666667777776 4 13455544 35678999999998876665443 4
Q ss_pred EEEEEEcCCCceEEee-eCCC---eeeeeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 222 EIVAIALNGQNIQVLV-SGSD---FYAFPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt-~~~~---~~~~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
.+.++|+...+-..+. +++. ..-..+|++ |=+++|-... +..+|.+.|+. ... ..+..+.++.
T Consensus 220 SvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~-------dS~~V~iLDiR-~P~-tpva~L~~H~--- 287 (364)
T KOG0290|consen 220 SVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM-------DSNKVVILDIR-VPC-TPVARLRNHQ--- 287 (364)
T ss_pred cEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc-------CCceEEEEEec-CCC-cceehhhcCc---
Confidence 5777788765544443 3322 122335555 3344443332 34568888887 332 2344556665
Q ss_pred cccccCceeCCCCc-EEEEEecCCCceEEEEEEcC
Q 004816 297 VESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIES 330 (729)
Q Consensus 297 ~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~ 330 (729)
..+..++|.|-.+ .+++..+ . .+...+|+.
T Consensus 288 -a~VNgIaWaPhS~~hictaGD-D--~qaliWDl~ 318 (364)
T KOG0290|consen 288 -ASVNGIAWAPHSSSHICTAGD-D--CQALIWDLQ 318 (364)
T ss_pred -ccccceEecCCCCceeeecCC-c--ceEEEEecc
Confidence 7788999999887 6666544 2 333344553
No 415
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.49 E-value=1.6 Score=43.58 Aligned_cols=186 Identities=10% Similarity=0.032 Sum_probs=96.0
Q ss_pred EEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV 237 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt 237 (729)
+++...+|+|.+|+...- ....-+-.. ..++++.++.|-|+.-+.+..+ ..|-.+++-.|+.--+.
T Consensus 100 LlS~sdDG~i~iw~~~~W-~~~~slK~H----~~~Vt~lsiHPS~KLALsVg~D---------~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 100 LLSGSDDGHIIIWRVGSW-ELLKSLKAH----KGQVTDLSIHPSGKLALSVGGD---------QVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eeeecCCCcEEEEEcCCe-EEeeeeccc----ccccceeEecCCCceEEEEcCC---------ceeeeehhhcCccceee
Confidence 445557888988887541 111222222 3458999999999954444333 35777788777655444
Q ss_pred eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec
Q 004816 238 SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR 317 (729)
Q Consensus 238 ~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~ 317 (729)
.-........|+|.|.+.+.... +..+||-.+.. .+ ...+... .......|...+.|+...++
T Consensus 166 ~L~~~at~v~w~~~Gd~F~v~~~-------~~i~i~q~d~A---~v--~~~i~~~-----~r~l~~~~l~~~~L~vG~d~ 228 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQGDHFVVSGR-------NKIDIYQLDNA---SV--FREIENP-----KRILCATFLDGSELLVGGDN 228 (362)
T ss_pred ccCCcceeeEEcCCCCEEEEEec-------cEEEEEecccH---hH--hhhhhcc-----ccceeeeecCCceEEEecCC
Confidence 43333445899999998776652 22334444322 21 1111111 11122334333324433322
Q ss_pred CCCceEEEEEEcCCCeEE-EeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCc
Q 004816 318 KNGFWNLHKWIESNNEVL-AIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHS 389 (729)
Q Consensus 318 ~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~ 389 (729)
..+-..|-+++..- .++..+.. ..++.+... +...++.+...+|...+|-++.++++
T Consensus 229 ----~~i~~~D~ds~~~~~~~~AH~~R---------VK~i~~~~~--~~~~~lvTaSSDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 229 ----EWISLKDTDSDTPLTEFLAHENR---------VKDIASYTN--PEHEYLVTASSDGFIKVWDIDMETKK 286 (362)
T ss_pred ----ceEEEeccCCCccceeeecchhh---------eeeeEEEec--CCceEEEEeccCceEEEEEccccccC
Confidence 23444454442211 11111111 122232211 34467788888999999988887655
No 416
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=94.48 E-value=2.1 Score=41.32 Aligned_cols=155 Identities=9% Similarity=0.026 Sum_probs=92.0
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCc
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKA 270 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~ 270 (729)
..+....|.-..+.|+-..++ ..+.++|..+|.+.+-..-.....+...|+||+.|. ++ .++
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd---------~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilT-ia--------~gs 205 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADD---------KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILT-IA--------YGS 205 (334)
T ss_pred CcceeEEEeccCceEEeeccC---------CceEEEEeccCcEEEEEecCCCCcceeeccCCCEEE-Ee--------cCc
Confidence 334555666655555444332 357778998887765444444567788999999664 44 123
Q ss_pred EEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCccc
Q 004816 271 ELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWV 350 (729)
Q Consensus 271 ~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~ 350 (729)
.|--+|.. +=. ++...+.. ..+....-+|+..+++... ....+|++|-.+|+..... ..+.+ +|
T Consensus 206 sV~Fwdak-sf~-----~lKs~k~P--~nV~SASL~P~k~~fVaGg---ed~~~~kfDy~TgeEi~~~-nkgh~-gp--- 269 (334)
T KOG0278|consen 206 SVKFWDAK-SFG-----LLKSYKMP--CNVESASLHPKKEFFVAGG---EDFKVYKFDYNTGEEIGSY-NKGHF-GP--- 269 (334)
T ss_pred eeEEeccc-ccc-----ceeeccCc--cccccccccCCCceEEecC---cceEEEEEeccCCceeeec-ccCCC-Cc---
Confidence 35555655 211 11111100 3445667788865544433 2466899999999877663 11111 22
Q ss_pred ccCcceeeeeecCCCCEEEEEEEECCeEEEEEEEC
Q 004816 351 FGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDD 385 (729)
Q Consensus 351 ~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~ 385 (729)
...+.|. .++.+|.+..++|..+||....
T Consensus 270 --VhcVrFS----PdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 270 --VHCVRFS----PDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred --eEEEEEC----CCCceeeccCCCceEEEEEecC
Confidence 2345666 4567888888999999998765
No 417
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=8 Score=45.32 Aligned_cols=106 Identities=16% Similarity=0.091 Sum_probs=63.2
Q ss_pred CceeCCCCc--EEEEEecCCC-ceEEEEEEcCCC-eEEEeeccCccccC-CcccccCcceeeeeecCCCCEEEEEEEE--
Q 004816 302 EPKWSSKGE--LFFVTDRKNG-FWNLHKWIESNN-EVLAIYSLDAEFSR-PLWVFGINSYEIIQSHGEKNLIACSYRQ-- 374 (729)
Q Consensus 302 ~~~wspDG~--l~~~~~~~~g-~~~l~~~d~~~g-~~~~l~~~~~~~~~-~~w~~~~~~~~~l~~~~~~~~l~~~s~~-- 374 (729)
.+.++.|+. +++.... .+ ..++..+....+ ..+.++.+..++.. ..|. . +.+.++|.+..
T Consensus 344 ~~~~~~d~~~~~~~~~~~-~~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~---------~---~~~~i~f~~~~~~ 410 (755)
T KOG2100|consen 344 EPVFSSDGSSYLKVDSVS-DGGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYD---------K---DSNRIYFDAYEED 410 (755)
T ss_pred cceEeecCCceeEEEeec-cCCEEEEEEEEcCCCCccccccccceEEEEecccc---------C---CCceEEEEecCCC
Confidence 467888875 3344444 44 677777766665 55555543322221 1111 1 66778888776
Q ss_pred CCeEEEEEEECCCCceEeeccCCc----ceEEe-ee-eCCEEEEEEeCCCCC
Q 004816 375 NGRSYLGILDDFGHSLSLLDIPFT----DIDNI-TL-GNDCLFVEGASGVEP 420 (729)
Q Consensus 375 ~g~~~ly~~d~~~g~~~~lt~~~~----~v~~~-~~-~~~~~~~~~~~~~~~ 420 (729)
.+..+||.+++.+....+++.... .+.++ .+ ....+++.+..+..|
T Consensus 411 ~~~~~ly~i~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~v~~~~gP~~p 462 (755)
T KOG2100|consen 411 PSERHLYSISLGSGTVESLTCSLITGPCTYLSVSFSKSAKYYVLSCSGPKVP 462 (755)
T ss_pred CCceEEEEEEccccccccccccCCCCcceEEEEecCCcccEEEEEccCCCCC
Confidence 678999999999988888876543 23333 22 234555556666655
No 418
>PHA02713 hypothetical protein; Provisional
Probab=94.46 E-value=3.7 Score=46.43 Aligned_cols=240 Identities=7% Similarity=-0.079 Sum_probs=121.4
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.++.+|+.+ ++-..++.-+. .+.......-+| .|+.+...... ......++++|+.++....+.+-...-..
T Consensus 273 ~v~~yd~~~--~~W~~l~~mp~---~r~~~~~a~l~~-~IYviGG~~~~--~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~ 344 (557)
T PHA02713 273 CILVYNINT--MEYSVISTIPN---HIINYASAIVDN-EIIIAGGYNFN--NPSLNKVYKINIENKIHVELPPMIKNRCR 344 (557)
T ss_pred CEEEEeCCC--CeEEECCCCCc---cccceEEEEECC-EEEEEcCCCCC--CCccceEEEEECCCCeEeeCCCCcchhhc
Confidence 578899887 66666665421 111111222344 45444321111 11235789999988776665432211111
Q ss_pred ee-eCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC-----
Q 004816 246 PR-MDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN----- 319 (729)
Q Consensus 246 ~~-~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~----- 319 (729)
+. -.-+| +|+.+...... . ....+..+|.. +.+.. ..+..... .... ..-.-+|+||.......
T Consensus 345 ~~~~~~~g-~IYviGG~~~~-~-~~~sve~Ydp~-~~~W~---~~~~mp~~--r~~~-~~~~~~g~IYviGG~~~~~~~~ 414 (557)
T PHA02713 345 FSLAVIDD-TIYAIGGQNGT-N-VERTIECYTMG-DDKWK---MLPDMPIA--LSSY-GMCVLDQYIYIIGGRTEHIDYT 414 (557)
T ss_pred eeEEEECC-EEEEECCcCCC-C-CCceEEEEECC-CCeEE---ECCCCCcc--cccc-cEEEECCEEEEEeCCCcccccc
Confidence 21 22344 57666632211 1 13458888887 55432 22222100 1111 12234677766653311
Q ss_pred ---------------CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC----eEEE
Q 004816 320 ---------------GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG----RSYL 380 (729)
Q Consensus 320 ---------------g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g----~~~l 380 (729)
....+.++|+.+++++.+.+........ .... -++.||+....++ ...+
T Consensus 415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~-------~~~~-----~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRP-------GVVS-----HKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred cccccccccccccccccceEEEECCCCCeEeecCCCCcccccC-------cEEE-----ECCEEEEEeCCCCCCccceeE
Confidence 1245889999999988776432111111 1122 2346776654322 1357
Q ss_pred EEEECCC-CceEeeccCCcce--EEeeeeCCEEEEEEeCCCCCceEEEEEcCCCcceee
Q 004816 381 GILDDFG-HSLSLLDIPFTDI--DNITLGNDCLFVEGASGVEPSSVAKVTLDDHKLKAV 436 (729)
Q Consensus 381 y~~d~~~-g~~~~lt~~~~~v--~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~~~~l 436 (729)
.++|+++ .+++.+..-.... ..+..-+++++++++-.. ...+..+|+.+.+.+.+
T Consensus 483 e~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~-~~~~e~yd~~~~~W~~~ 540 (557)
T PHA02713 483 FRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYES-YMLQDTFNVYTYEWNHI 540 (557)
T ss_pred EEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecc-eeehhhcCcccccccch
Confidence 8999998 7898776433221 222444677777766433 23466777777776433
No 419
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=94.45 E-value=0.25 Score=47.63 Aligned_cols=82 Identities=15% Similarity=0.008 Sum_probs=47.8
Q ss_pred cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHH-HHHHHHhCCCCCCCcEEEEEcChHHHHHHH
Q 004816 509 ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCS-CATFLVGSGKADEKRLCITGGSAGGYTTLA 587 (729)
Q Consensus 509 ~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~-~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~ 587 (729)
.|......+.. .+.|+.++++|.+.. .. . ....+++.. .++.+... ....++.++|||+||.++..
T Consensus 14 ~~~~~~~~l~~-~~~v~~~~~~g~~~~-~~----~-----~~~~~~~~~~~~~~l~~~--~~~~~~~l~g~s~Gg~~a~~ 80 (212)
T smart00824 14 EYARLAAALRG-RRDVSALPLPGFGPG-EP----L-----PASADALVEAQAEAVLRA--AGGRPFVLVGHSSGGLLAHA 80 (212)
T ss_pred HHHHHHHhcCC-CccEEEecCCCCCCC-CC----C-----CCCHHHHHHHHHHHHHHh--cCCCCeEEEEECHHHHHHHH
Confidence 35555555543 588999998865321 11 0 012233322 23333332 23467999999999999977
Q ss_pred HHh----CCCcceEEEEecc
Q 004816 588 ALA----FRDTFKAGASLYG 603 (729)
Q Consensus 588 ~~~----~~~~~~a~v~~~~ 603 (729)
++. ++..+..++...+
T Consensus 81 ~a~~l~~~~~~~~~l~~~~~ 100 (212)
T smart00824 81 VAARLEARGIPPAAVVLLDT 100 (212)
T ss_pred HHHHHHhCCCCCcEEEEEcc
Confidence 765 4556777766544
No 420
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=94.38 E-value=1.5 Score=43.13 Aligned_cols=109 Identities=9% Similarity=0.144 Sum_probs=68.7
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceE--Eee-e----CCCeeeeeeeCC--CCCeEEEEEec
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQ--VLV-S----GSDFYAFPRMDP--RGERMAWIEWH 261 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~--~lt-~----~~~~~~~~~~SP--DG~~la~~~~~ 261 (729)
.++.-..|-|++.+++...+ .+|.+++++.+..+ .+. + .....++-+||| ||..++.+.
T Consensus 124 g~i~cvew~Pns~klasm~d----------n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-- 191 (370)
T KOG1007|consen 124 GKINCVEWEPNSDKLASMDD----------NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-- 191 (370)
T ss_pred CceeeEEEcCCCCeeEEecc----------CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC--
Confidence 35566789999999988865 34778888765432 221 1 123456679999 999998765
Q ss_pred CCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEE
Q 004816 262 HPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLH 325 (729)
Q Consensus 262 ~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~ 325 (729)
...|+.+|+. +-... ..+-.... ..+..+.+.|+-+ ++....+ .|+-+||
T Consensus 192 -------d~tl~~~D~R-T~~~~-~sI~dAHg----q~vrdlDfNpnkq~~lvt~gD-dgyvriW 242 (370)
T KOG1007|consen 192 -------DSTLQFWDLR-TMKKN-NSIEDAHG----QRVRDLDFNPNKQHILVTCGD-DGYVRIW 242 (370)
T ss_pred -------CCcEEEEEcc-chhhh-cchhhhhc----ceeeeccCCCCceEEEEEcCC-CccEEEE
Confidence 2448888876 33211 11111121 3456678999987 6656555 6776666
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.30 E-value=1.8 Score=45.38 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=36.6
Q ss_pred eeecceecCCCCEEEEEEeccCC-----CCCCcceEEEEEEcCCC-------------ceEEeeeCCCeeeeeeeCCC-C
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQ-----DALNSTTEIVAIALNGQ-------------NIQVLVSGSDFYAFPRMDPR-G 252 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~-----~~~~~~~~l~~~dl~~g-------------~~~~lt~~~~~~~~~~~SPD-G 252 (729)
.-..+.|.||| .|++...+... .+......|.+++.++. .......|.....+.+|.|. |
T Consensus 115 ~g~~l~fgpDG-~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg 193 (331)
T PF07995_consen 115 NGGGLAFGPDG-KLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTG 193 (331)
T ss_dssp -EEEEEE-TTS-EEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTT
T ss_pred CCccccCCCCC-cEEEEeCCCCCcccccccccccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCC
Confidence 33568899999 45555443322 23334677899998764 22344455555567788887 5
Q ss_pred CeEEEEE
Q 004816 253 ERMAWIE 259 (729)
Q Consensus 253 ~~la~~~ 259 (729)
+ |+...
T Consensus 194 ~-l~~~d 199 (331)
T PF07995_consen 194 R-LWAAD 199 (331)
T ss_dssp E-EEEEE
T ss_pred c-EEEEc
Confidence 4 54443
No 422
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=94.29 E-value=0.42 Score=48.98 Aligned_cols=60 Identities=5% Similarity=0.009 Sum_probs=43.3
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEec
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDR 317 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~ 317 (729)
....+|+||+..|.+.+.+ ..++++|+. .|.+ ...+.+++ .++..++|.|-++ +.-.+.+
T Consensus 126 iydL~Ws~d~~~l~s~s~d--------ns~~l~Dv~-~G~l--~~~~~dh~----~yvqgvawDpl~qyv~s~s~d 186 (434)
T KOG1009|consen 126 IYDLAWSPDSNFLVSGSVD--------NSVRLWDVH-AGQL--LAILDDHE----HYVQGVAWDPLNQYVASKSSD 186 (434)
T ss_pred hhhhhccCCCceeeeeecc--------ceEEEEEec-ccee--Eeeccccc----cccceeecchhhhhhhhhccC
Confidence 3457999999999888743 347888888 6765 44555555 7888999999887 5444433
No 423
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=94.28 E-value=2.7 Score=44.95 Aligned_cols=130 Identities=11% Similarity=0.011 Sum_probs=76.6
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
.|+++|.. +.+.+++|.|-.|...+ --...|... +..+...+|.|+.+.|+|... .++++-++
T Consensus 111 RW~~dGtg-Llt~GEDG~iKiWSrsG--MLRStl~Q~----~~~v~c~~W~p~S~~vl~c~g----------~h~~IKpL 173 (737)
T KOG1524|consen 111 RWSPDGAG-LLTAGEDGVIKIWSRSG--MLRSTVVQN----EESIRCARWAPNSNSIVFCQG----------GHISIKPL 173 (737)
T ss_pred ccCCCCce-eeeecCCceEEEEeccc--hHHHHHhhc----CceeEEEEECCCCCceEEecC----------CeEEEeec
Confidence 34544444 45677889898888764 222233333 345677899999999999965 35777777
Q ss_pred CCC-ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 229 NGQ-NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 229 ~~g-~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
+-. ++.+--...+..-...|||....|+-.. .....-++|.. |.. .-....++ ..+..++|.|
T Consensus 174 ~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG--------ED~kfKvWD~~--G~~--Lf~S~~~e----y~ITSva~np 237 (737)
T KOG1524|consen 174 AANSKIIRWRAHDGLVLSLSWSTQSNIIASGG--------EDFRFKIWDAQ--GAN--LFTSAAEE----YAITSVAFNP 237 (737)
T ss_pred ccccceeEEeccCcEEEEeecCccccceeecC--------CceeEEeeccc--Ccc--cccCChhc----cceeeeeecc
Confidence 642 2333344455666778999888665332 12233445533 321 11112222 5667888988
Q ss_pred CCcEE
Q 004816 308 KGELF 312 (729)
Q Consensus 308 DG~l~ 312 (729)
| ++|
T Consensus 238 d-~~~ 241 (737)
T KOG1524|consen 238 E-KDY 241 (737)
T ss_pred c-cce
Confidence 8 533
No 424
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=94.28 E-value=0.12 Score=54.06 Aligned_cols=97 Identities=16% Similarity=0.143 Sum_probs=63.4
Q ss_pred EEEEEcCCCCCCccccchhhhHHHhhCCcE---EEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 494 LLVKSHGGPTSEARGILNLSIQYWTSRGWA---FVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 494 ~vv~~hGg~~~~~~~~~~~~~~~la~~G~~---v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.++++||. ......+..+...+...|+. +..+++.+..+... .....+.+.+-++.+..... .
T Consensus 61 pivlVhG~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----------~~~~~~ql~~~V~~~l~~~g--a 126 (336)
T COG1075 61 PIVLVHGL--GGGYGNFLPLDYRLAILGWLTNGVYAFELSGGDGTYS----------LAVRGEQLFAYVDEVLAKTG--A 126 (336)
T ss_pred eEEEEccC--cCCcchhhhhhhhhcchHHHhcccccccccccCCCcc----------ccccHHHHHHHHHHHHhhcC--C
Confidence 58889997 23334455555557777887 88888875421111 01123445555665555533 4
Q ss_pred CcEEEEEcChHHHHHHHHHh-CC--CcceEEEEeccc
Q 004816 571 KRLCITGGSAGGYTTLAALA-FR--DTFKAGASLYGV 604 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~-~~--~~~~a~v~~~~~ 604 (729)
+++.++|||+||.....++. .+ .+++..+.+...
T Consensus 127 ~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 127 KKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred CceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 78999999999999987776 44 788888887764
No 425
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=94.25 E-value=4.1 Score=45.95 Aligned_cols=197 Identities=12% Similarity=0.036 Sum_probs=99.5
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCCCee---c--CCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEc
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSSPLP---I--TPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIAL 228 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~~~~---l--t~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl 228 (729)
++.|+|. +.++|....+.+ .+.++ + ...+ ..-.-.+.|.=..+.|+++.-.. ..|-+-.|
T Consensus 990 gt~LL~a--qg~~I~~lplng--~~~~K~~ak~~l~~p---~~IiVGidfDC~e~mvyWtDv~g--------~SI~rasL 1054 (1289)
T KOG1214|consen 990 GTFLLYA--QGQQIGYLPLNG--TRLQKDAAKTLLSLP---GSIIVGIDFDCRERMVYWTDVAG--------RSISRASL 1054 (1289)
T ss_pred cceEEEe--ccceEEEeecCc--chhchhhhhceEecc---cceeeeeecccccceEEEeecCC--------Cccccccc
Confidence 4567777 466799988875 32221 1 1110 11223344555556555543221 35667777
Q ss_pred CCCceEEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCC
Q 004816 229 NGQNIQVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSS 307 (729)
Q Consensus 229 ~~g~~~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wsp 307 (729)
.+++.+.+.. +...-.+.+..--+|.++|+... ..+|-++.++ |+.+++....+. .....+.-.+
T Consensus 1055 ~G~Ep~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~-------lD~IevA~Ld--G~~rkvLf~tdL-----VNPR~iv~D~ 1120 (1289)
T KOG1214|consen 1055 EGAEPETIVNSGLISPEGIAVDHIRRNMYWTDSV-------LDKIEVALLD--GSERKVLFYTDL-----VNPRAIVVDP 1120 (1289)
T ss_pred cCCCCceeecccCCCccceeeeeccceeeeeccc-------cchhheeecC--CceeeEEEeecc-----cCcceEEeec
Confidence 7777766643 22222222222234556655421 2335566665 554333333332 2334555555
Q ss_pred CCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECC
Q 004816 308 KGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDF 386 (729)
Q Consensus 308 DG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~ 386 (729)
=+. |||+--. +..-.|-+.+.++...+.|..++-. ..+.+.|++ ..+.|-|.- .|..+|--+..+
T Consensus 1121 ~rgnLYwtDWn-RenPkIets~mDG~NrRilin~Dig--------LPNGLtfdp---fs~~LCWvD--AGt~rleC~~p~ 1186 (1289)
T KOG1214|consen 1121 IRGNLYWTDWN-RENPKIETSSMDGENRRILINTDIG--------LPNGLTFDP---FSKLLCWVD--AGTKRLECTLPD 1186 (1289)
T ss_pred ccCceeecccc-ccCCcceeeccCCccceEEeecccC--------CCCCceeCc---ccceeeEEe--cCCcceeEecCC
Confidence 555 8776544 5666788888877777766644311 223455553 444455443 455555555554
Q ss_pred CCceEee
Q 004816 387 GHSLSLL 393 (729)
Q Consensus 387 ~g~~~~l 393 (729)
+-..+.+
T Consensus 1187 g~gRR~i 1193 (1289)
T KOG1214|consen 1187 GTGRRVI 1193 (1289)
T ss_pred CCcchhh
Confidence 4333333
No 426
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.39 Score=44.93 Aligned_cols=96 Identities=23% Similarity=0.209 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCCCCcc-c-------------cchhhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccC--CCcccHHHH
Q 004816 492 PPLLVKSHGGPTSEAR-G-------------ILNLSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGR--WGIVDVNDC 555 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~-~-------------~~~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~--~~~~~~~D~ 555 (729)
..++|++||.+--... | ...+++......||.|+..|..- -+.+.+.-... +-...++-+
T Consensus 101 ~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~----~~kfye~k~np~kyirt~veh~ 176 (297)
T KOG3967|consen 101 QKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNR----ERKFYEKKRNPQKYIRTPVEHA 176 (297)
T ss_pred cceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCch----hhhhhhcccCcchhccchHHHH
Confidence 3589999996421111 1 11234555567899999998641 22222221111 111224444
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-CCC
Q 004816 556 CSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA-FRD 593 (729)
Q Consensus 556 ~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~-~~~ 593 (729)
..+-.+++.. ...+.|+++.||+||++++-++. +|+
T Consensus 177 ~yvw~~~v~p--a~~~sv~vvahsyGG~~t~~l~~~f~~ 213 (297)
T KOG3967|consen 177 KYVWKNIVLP--AKAESVFVVAHSYGGSLTLDLVERFPD 213 (297)
T ss_pred HHHHHHHhcc--cCcceEEEEEeccCChhHHHHHHhcCC
Confidence 5555555443 45688999999999999999987 543
No 427
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.12 E-value=4.3 Score=44.07 Aligned_cols=30 Identities=10% Similarity=-0.017 Sum_probs=21.8
Q ss_pred cCCHHHHhccCCccCceEEcCCCcEEEEee
Q 004816 78 PLTADVVSGASKRLGGTAVDGHGRLIWLES 107 (729)
Q Consensus 78 ~lt~e~i~~~~~~~~~~~~~pg~~~~~~~~ 107 (729)
.++++.+...-..+.++.+.|+++++.++.
T Consensus 19 ~f~~~~va~GL~~Pw~maflPDG~llVtER 48 (454)
T TIGR03606 19 NFDKKVLLSGLNKPWALLWGPDNQLWVTER 48 (454)
T ss_pred CcEEEEEECCCCCceEEEEcCCCeEEEEEe
Confidence 355666666556788999999667887774
No 428
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.08 E-value=2.1 Score=42.77 Aligned_cols=153 Identities=11% Similarity=0.100 Sum_probs=87.4
Q ss_pred CceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCC---CCCceeeecceecCCC-CEEEEEEeccCCCCCCcceE
Q 004816 147 GGAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRF-NRYVTVREDRRQDALNSTTE 222 (729)
Q Consensus 147 ~~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~SPdG-~~l~~~~~~~~~~~~~~~~~ 222 (729)
+.+..++.++|+.+- .+.||+|.... .++++-..+ ++. +-.+.+|.- +.++.. |....++
T Consensus 97 I~~V~l~r~riVvvl--~~~I~VytF~~---n~k~l~~~et~~NPk----GlC~~~~~~~k~~Laf-------Pg~k~Gq 160 (346)
T KOG2111|consen 97 IKAVKLRRDRIVVVL--ENKIYVYTFPD---NPKLLHVIETRSNPK----GLCSLCPTSNKSLLAF-------PGFKTGQ 160 (346)
T ss_pred eeeEEEcCCeEEEEe--cCeEEEEEcCC---ChhheeeeecccCCC----ceEeecCCCCceEEEc-------CCCccce
Confidence 445667788888774 56699998763 344443321 111 111233311 222111 1112367
Q ss_pred EEEEEcCCCce---EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 223 IVAIALNGQNI---QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 223 l~~~dl~~g~~---~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
|-++|+...+. ..+........-.+.+-+|..||-.+. .++-|.++|.. +|+.- ..+-.+.+. ..
T Consensus 161 vQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-------kGTLIRIFdt~-~g~~l-~E~RRG~d~---A~ 228 (346)
T KOG2111|consen 161 VQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST-------KGTLIRIFDTE-DGTLL-QELRRGVDR---AD 228 (346)
T ss_pred EEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc-------CcEEEEEEEcC-CCcEe-eeeecCCch---he
Confidence 88888876544 444444445566789999999986662 34568889988 67641 112233331 34
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEEEc
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIE 329 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~ 329 (729)
+..++||||+. |++.++ .|.-+|+.+..
T Consensus 229 iy~iaFSp~~s~LavsSd--KgTlHiF~l~~ 257 (346)
T KOG2111|consen 229 IYCIAFSPNSSWLAVSSD--KGTLHIFSLRD 257 (346)
T ss_pred EEEEEeCCCccEEEEEcC--CCeEEEEEeec
Confidence 56789999999 555544 47777775543
No 429
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=94.08 E-value=3.1 Score=44.02 Aligned_cols=179 Identities=11% Similarity=0.098 Sum_probs=90.7
Q ss_pred eEEEEEEcCCCceEEeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
+.+-++|+..+.+.+...+. .......+.-...+||-++ .+.+|.+..+. ++... ..+..+.. ..
T Consensus 101 ~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs--------~gGdiiih~~~-t~~~t-t~f~~~sg----qs 166 (673)
T KOG4378|consen 101 GCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS--------DGGDIIIHGTK-TKQKT-TTFTIDSG----QS 166 (673)
T ss_pred ceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec--------cCCcEEEEecc-cCccc-cceecCCC----Ce
Confidence 34666787754443333332 3334444444556777665 34568787777 44321 12222222 45
Q ss_pred ccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeE
Q 004816 300 PTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRS 378 (729)
Q Consensus 300 ~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~ 378 (729)
+..+.+++-.+ ++....+ .|.-.|| |..+.... .........|. ..+-|.| .+..|+++-.-+ .
T Consensus 167 vRll~ys~skr~lL~~asd-~G~Vtlw--Dv~g~sp~--~~~~~~HsAP~-----~gicfsp---sne~l~vsVG~D--k 231 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASD-KGAVTLW--DVQGMSPI--FHASEAHSAPC-----RGICFSP---SNEALLVSVGYD--K 231 (673)
T ss_pred EEEeecccccceeeEeecc-CCeEEEE--eccCCCcc--cchhhhccCCc-----CcceecC---CccceEEEeccc--c
Confidence 56678999888 6655555 5655555 55443221 11100111111 1223332 444555554333 4
Q ss_pred EEEEEECCCCceE-eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 379 YLGILDDFGHSLS-LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 379 ~ly~~d~~~g~~~-~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.||.+|...++.. .|+- ......+ ..+.+.+++..++. ++||.||+.+.+
T Consensus 232 ki~~yD~~s~~s~~~l~y-~~Plstvaf~~~G~~L~aG~s~---G~~i~YD~R~~k 283 (673)
T KOG4378|consen 232 KINIYDIRSQASTDRLTY-SHPLSTVAFSECGTYLCAGNSK---GELIAYDMRSTK 283 (673)
T ss_pred eEEEeecccccccceeee-cCCcceeeecCCceEEEeecCC---ceEEEEecccCC
Confidence 6777787554432 3332 2234444 45666777666554 488999987643
No 430
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.98 E-value=0.87 Score=47.87 Aligned_cols=196 Identities=10% Similarity=0.042 Sum_probs=108.0
Q ss_pred eeeecceecCCCCE-EEEEEeccCCCCCCcceEEEEEEcCCCceEE-eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNR-YVTVREDRRQDALNSTTEIVAIALNGQNIQV-LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~-l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~-lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+...+|||..-+ ++.++.. +.+|| +..+-.++. +..-.+...+..|--||+.+| +. +..|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S~--------rvqly--~~~~~~~~k~~srFk~~v~s~~fR~DG~Lla-aG-D~sG---- 90 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSSV--------RVQLY--SSVTRSVRKTFSRFKDVVYSVDFRSDGRLLA-AG-DESG---- 90 (487)
T ss_pred CcceeEecCCCCCCceEEeccc--------EEEEE--ecchhhhhhhHHhhccceeEEEeecCCeEEE-cc-CCcC----
Confidence 34567778884432 2333221 23454 544433332 333344556788989999665 33 4443
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEE-EeeccCccccC
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVL-AIYSLDAEFSR 346 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~-~l~~~~~~~~~ 346 (729)
.+-++|.. +-.+ ++.+.... ..+....|+|++. ++....+ .....+| |+++..+. .|.....-+..
T Consensus 91 --~V~vfD~k-~r~i--LR~~~ah~----apv~~~~f~~~d~t~l~s~sD-d~v~k~~--d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 91 --HVKVFDMK-SRVI--LRQLYAHQ----APVHVTKFSPQDNTMLVSGSD-DKVVKYW--DLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred --cEEEeccc-cHHH--HHHHhhcc----CceeEEEecccCCeEEEecCC-CceEEEE--EcCCcEEEEEecCCcceeEe
Confidence 37888855 2222 34444444 4456678999887 4444433 3444444 55565542 22222222333
Q ss_pred CcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEE
Q 004816 347 PLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 347 ~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
..|++ -+++++++..-||..+||-....+.....+.. ...|..+ ..+++.+++.++.+ ++-.
T Consensus 159 g~~~~------------~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~pVe~vl~lpsgs~iasAgGn----~vkV 221 (487)
T KOG0310|consen 159 GDISP------------ANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCPVESVLALPSGSLIASAGGN----SVKV 221 (487)
T ss_pred ecccc------------CCCeEEEecCCCceEEEEEeccCCceeEEecC-CCceeeEEEcCCCCEEEEcCCC----eEEE
Confidence 45555 55678999888999999966555433334433 3346665 55565666666543 4666
Q ss_pred EEcCCC
Q 004816 426 VTLDDH 431 (729)
Q Consensus 426 ~d~~~~ 431 (729)
+|+.+|
T Consensus 222 WDl~~G 227 (487)
T KOG0310|consen 222 WDLTTG 227 (487)
T ss_pred EEecCC
Confidence 777744
No 431
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=93.96 E-value=4.2 Score=40.25 Aligned_cols=162 Identities=10% Similarity=0.066 Sum_probs=92.3
Q ss_pred EEEEEECCCCcEEEEeCCCCC-CCCeecCC---------CCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKD-SSPLPITP---------DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~-~~~~~lt~---------~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
+...+...++.+.++|++..+ .+..-|+. .+......+.+..|=|-..-+ |+.... ...|-+
T Consensus 57 rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm-FtssSF-------DhtlKV 128 (397)
T KOG4283|consen 57 RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM-FTSSSF-------DHTLKV 128 (397)
T ss_pred eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce-eecccc-------cceEEE
Confidence 455555567778888886410 11111111 111112344566677744433 332222 246888
Q ss_pred EEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCcee
Q 004816 226 IALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKW 305 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~w 305 (729)
+|..+-++.....-++....-+|||=...=+.+.... ...+|.+.|++ +|.. -..+.+.- ..+-.+.|
T Consensus 129 WDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt-----r~~~VrLCDi~-SGs~--sH~LsGHr----~~vlaV~W 196 (397)
T KOG4283|consen 129 WDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT-----RDVQVRLCDIA-SGSF--SHTLSGHR----DGVLAVEW 196 (397)
T ss_pred eecccceeeEEeecCceeehhhcChhhhcceEEEEec-----CCCcEEEEecc-CCcc--eeeecccc----CceEEEEe
Confidence 8988766555544455555668898554322233222 34668999999 7876 34566665 56678899
Q ss_pred CCCCc-EEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 306 SSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 306 spDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
+|... ++++... .|.-+||-+.-.+|-.+.|-
T Consensus 197 sp~~e~vLatgsa-Dg~irlWDiRrasgcf~~lD 229 (397)
T KOG4283|consen 197 SPSSEWVLATGSA-DGAIRLWDIRRASGCFRVLD 229 (397)
T ss_pred ccCceeEEEecCC-CceEEEEEeecccceeEEee
Confidence 99988 6666554 67777775555555555543
No 432
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=93.93 E-value=0.15 Score=54.72 Aligned_cols=82 Identities=12% Similarity=-0.011 Sum_probs=55.7
Q ss_pred cchhhhHHHhhCCcEE----EE--ecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHH
Q 004816 509 ILNLSIQYWTSRGWAF----VD--VNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGG 582 (729)
Q Consensus 509 ~~~~~~~~la~~G~~v----~~--~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG 582 (729)
.|..+++.|.+.||.. ++ .|.|-+... ...-...+...|+.+.+.. .++|.|+||||||
T Consensus 66 ~~~~li~~L~~~GY~~~~~l~~~pYDWR~~~~~------------~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGg 130 (389)
T PF02450_consen 66 YFAKLIENLEKLGYDRGKDLFAAPYDWRLSPAE------------RDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGG 130 (389)
T ss_pred hHHHHHHHHHhcCcccCCEEEEEeechhhchhh------------HHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCc
Confidence 6777889999888762 22 466543320 0011455666667666542 5899999999999
Q ss_pred HHHHHHHh-CC------CcceEEEEecccc
Q 004816 583 YTTLAALA-FR------DTFKAGASLYGVA 605 (729)
Q Consensus 583 ~~a~~~~~-~~------~~~~a~v~~~~~~ 605 (729)
.++..++. .+ +.++..|.+++..
T Consensus 131 l~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 131 LVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred hHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 99999887 42 2588888887654
No 433
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.90 E-value=2.2 Score=45.43 Aligned_cols=65 Identities=9% Similarity=0.056 Sum_probs=43.6
Q ss_pred eecceecCCCCEEEEEEeccCC-----------CCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQ-----------DALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIE 259 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~-----------~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~ 259 (729)
...++|.|||+ |++....... ........|++++.++++.+.+..+.....+.+|+|+|+ |+++.
T Consensus 126 ~~~l~~gpDG~-LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~td 201 (367)
T TIGR02604 126 LNSLAWGPDGW-LYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCD 201 (367)
T ss_pred ccCceECCCCC-EEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEc
Confidence 46789999997 4554332110 011123579999999988888877766667889999997 44443
No 434
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.88 E-value=0.12 Score=57.50 Aligned_cols=71 Identities=13% Similarity=0.273 Sum_probs=42.5
Q ss_pred CCcEEEEecCCCC--CCCchhHHHhhccCCCcccHHHHHHHHHHHHhCC----CCC---CCcEEEEEcChHHHHHHHHHh
Q 004816 520 RGWAFVDVNYGGS--TGYGREFRERLLGRWGIVDVNDCCSCATFLVGSG----KAD---EKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 520 ~G~~v~~~d~rGs--~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~----~~d---~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..|..+++|+-+- .-+|+...+ ..+=+..|++++++.. ..+ |..|+|+||||||.+|..+++
T Consensus 131 ~~~DFFaVDFnEe~tAm~G~~l~d---------QtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t 201 (973)
T KOG3724|consen 131 FSFDFFAVDFNEEFTAMHGHILLD---------QTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT 201 (973)
T ss_pred cccceEEEcccchhhhhccHhHHH---------HHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh
Confidence 3477888887531 112222211 2333556666665531 222 667999999999999988888
Q ss_pred CCCcceEEE
Q 004816 591 FRDTFKAGA 599 (729)
Q Consensus 591 ~~~~~~a~v 599 (729)
++...++.|
T Consensus 202 lkn~~~~sV 210 (973)
T KOG3724|consen 202 LKNEVQGSV 210 (973)
T ss_pred hhhhccchh
Confidence 664444443
No 435
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.80 E-value=0.5 Score=51.39 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=43.9
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCce-EEeeeCCCeeeeeeeCCCCCeEEE
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNI-QVLVSGSDFYAFPRMDPRGERMAW 257 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~-~~lt~~~~~~~~~~~SPDG~~la~ 257 (729)
..+.+.+|-|||.+++.... ..|+++|...|.. ..|-...+...-.+||.||++.|-
T Consensus 13 hci~d~afkPDGsqL~lAAg----------~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 13 HCINDIAFKPDGTQLILAAG----------SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred cchheeEECCCCceEEEecC----------CEEEEEeCCCcccccccccccceEEEEEEccCCceecc
Confidence 35688999999999988766 4599999887654 445555566777899999998663
No 436
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.80 E-value=6.1 Score=37.93 Aligned_cols=195 Identities=11% Similarity=0.082 Sum_probs=110.8
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCe-eeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDF-YAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~-~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
..+...++.-||++.+..-.+ ..|-++++..|....-..+.+. .-....|-|..+++-.. ..
T Consensus 18 gaV~avryN~dGnY~ltcGsd---------rtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G--------gD 80 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSD---------RTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG--------GD 80 (307)
T ss_pred cceEEEEEccCCCEEEEcCCC---------ceEEeecccccceeeeecCCCceeeeccccccccccccCC--------CC
Confidence 445677889999986554332 3466677776655443344332 34556778888887554 23
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcc
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLW 349 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w 349 (729)
..++++|++ +|+. .+.+.++. ..+..++|..+..+++...- .-..++|-.....-++.++..+..+
T Consensus 81 k~v~vwDV~-TGkv--~Rr~rgH~----aqVNtV~fNeesSVv~Sgsf-D~s~r~wDCRS~s~ePiQildea~D------ 146 (307)
T KOG0316|consen 81 KAVQVWDVN-TGKV--DRRFRGHL----AQVNTVRFNEESSVVASGSF-DSSVRLWDCRSRSFEPIQILDEAKD------ 146 (307)
T ss_pred ceEEEEEcc-cCee--eeeccccc----ceeeEEEecCcceEEEeccc-cceeEEEEcccCCCCccchhhhhcC------
Confidence 569999999 8876 56677776 56678889877666665543 2334444332333344455432211
Q ss_pred cccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCC--cceEEe--eeeCCEEEEEEeCCCCCceEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPF--TDIDNI--TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~--~~v~~~--~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
+..++. =.++.++...-+|..+.|-+. .|. ++.+. ..|..+ +.+++..++..-+ ..+.+
T Consensus 147 --~V~Si~------v~~heIvaGS~DGtvRtydiR--~G~---l~sDy~g~pit~vs~s~d~nc~La~~l~----stlrL 209 (307)
T KOG0316|consen 147 --GVSSID------VAEHEIVAGSVDGTVRTYDIR--KGT---LSSDYFGHPITSVSFSKDGNCSLASSLD----STLRL 209 (307)
T ss_pred --ceeEEE------ecccEEEeeccCCcEEEEEee--cce---eehhhcCCcceeEEecCCCCEEEEeecc----ceeee
Confidence 111111 123556666678887777553 333 22222 235555 4455544443322 35778
Q ss_pred EEcCCCcc
Q 004816 426 VTLDDHKL 433 (729)
Q Consensus 426 ~d~~~~~~ 433 (729)
+|.++|++
T Consensus 210 lDk~tGkl 217 (307)
T KOG0316|consen 210 LDKETGKL 217 (307)
T ss_pred cccchhHH
Confidence 88888875
No 437
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=93.78 E-value=4.6 Score=42.26 Aligned_cols=123 Identities=10% Similarity=0.011 Sum_probs=70.0
Q ss_pred ECCEEEEEECCC------CcEEEEeCCCCCCCCeecCCCCC-----------CCceeeecceecCCCCEEEEEEeccCCC
Q 004816 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYG-----------EPLVSYADGIFDPRFNRYVTVREDRRQD 215 (729)
Q Consensus 153 ~~~~i~~~~~~~------~~l~~~d~~~~~~~~~~lt~~~~-----------~~~~~~~~~~~SPdG~~l~~~~~~~~~~ 215 (729)
.++.++++.+.. ..|+.++.++ ...+.+.-... .....+...+++|||++|+.+.+..-..
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G--~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~ 171 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDG--RVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQ 171 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCC--cccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccC
Confidence 555777777777 7999999885 43333311100 0112346788999999887776654211
Q ss_pred C-------CCcceEEEEEEcCC-Cc-eEEe----ee-----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEe
Q 004816 216 A-------LNSTTEIVAIALNG-QN-IQVL----VS-----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYI 277 (729)
Q Consensus 216 ~-------~~~~~~l~~~dl~~-g~-~~~l----t~-----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~ 277 (729)
. ......|+.+|..+ ++ ..+. .. .....+...+-|||+. +.+..+.....-...+||.+++
T Consensus 172 d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~l-LvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 172 DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRL-LVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcE-EEEEccCCCCccceEEEEEEEc
Confidence 1 11136788888876 31 2222 11 1233456678889884 4455332211113567888887
Q ss_pred c
Q 004816 278 S 278 (729)
Q Consensus 278 ~ 278 (729)
.
T Consensus 251 ~ 251 (326)
T PF13449_consen 251 S 251 (326)
T ss_pred c
Confidence 6
No 438
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.77 E-value=3.1 Score=41.35 Aligned_cols=155 Identities=9% Similarity=0.083 Sum_probs=86.4
Q ss_pred eEEEECC-EEEEEECCCCcEEEEeCCCCCCC----CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEE
Q 004816 149 AFRIFGD-TVIFSNYKDQRLYKHSIDSKDSS----PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEI 223 (729)
Q Consensus 149 ~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~----~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l 223 (729)
.+.+.+. .|+.+...++.|-++|... -. -+.++. ...+...+|.|-|.+|+.-.+ + ..+
T Consensus 177 ~l~FHPre~ILiS~srD~tvKlFDfsK--~saKrA~K~~qd-----~~~vrsiSfHPsGefllvgTd-H--------p~~ 240 (430)
T KOG0640|consen 177 DLDFHPRETILISGSRDNTVKLFDFSK--TSAKRAFKVFQD-----TEPVRSISFHPSGEFLLVGTD-H--------PTL 240 (430)
T ss_pred ceeecchhheEEeccCCCeEEEEeccc--HHHHHHHHHhhc-----cceeeeEeecCCCceEEEecC-C--------Cce
Confidence 3444433 6788888888999999864 22 223333 255678899999999765543 2 235
Q ss_pred EEEEcCCCceEEeee----CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 224 VAIALNGQNIQVLVS----GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 224 ~~~dl~~g~~~~lt~----~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
.++|+++-+.-.-.. ..+..+...+|+.|+ |+.+...+ ..|.++|=- ++.. ++.+.....+ ..
T Consensus 241 rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYvTaSkD-------G~IklwDGV-S~rC--v~t~~~AH~g--se 307 (430)
T KOG0640|consen 241 RLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYVTASKD-------GAIKLWDGV-SNRC--VRTIGNAHGG--SE 307 (430)
T ss_pred eEEeccceeEeeecCcccccccceeEEEecCCcc-EEEEeccC-------CcEEeeccc-cHHH--HHHHHhhcCC--ce
Confidence 556776543221111 123456788999998 66555332 236666522 2322 2222222111 34
Q ss_pred ccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEE
Q 004816 300 PTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVL 335 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~ 335 (729)
+....|+.||+.+..+.. .. -+.++.+.+|...
T Consensus 308 vcSa~Ftkn~kyiLsSG~-DS--~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 308 VCSAVFTKNGKYILSSGK-DS--TVKLWEISTGRML 340 (430)
T ss_pred eeeEEEccCCeEEeecCC-cc--eeeeeeecCCceE
Confidence 567789999985545433 23 3344455566543
No 439
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=93.69 E-value=2.7 Score=42.93 Aligned_cols=141 Identities=9% Similarity=0.045 Sum_probs=80.1
Q ss_pred eEEEEEEcCCCce----EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCc
Q 004816 221 TEIVAIALNGQNI----QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTI 296 (729)
Q Consensus 221 ~~l~~~dl~~g~~----~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~ 296 (729)
..|++....+|.- +.++.........+|||..+.+.+...- ...|.++|+. .+......+....+
T Consensus 234 ~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~-------DgsIrIWDiR-s~~~~~~~~~kAh~--- 302 (440)
T KOG0302|consen 234 KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSC-------DGSIRIWDIR-SGPKKAAVSTKAHN--- 302 (440)
T ss_pred cceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeec-------CceEEEEEec-CCCccceeEeeccC---
Confidence 4577766666543 2344444566788999998887665532 2348888887 55333333444454
Q ss_pred cccccCceeCCCCcEEEEEecCCCceEEEEEE-cCCCeEEEee-ccCccccCCcccccCcceeeeeecCCCCEEEEEEEE
Q 004816 297 VESPTEPKWSSKGELFFVTDRKNGFWNLHKWI-ESNNEVLAIY-SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQ 374 (729)
Q Consensus 297 ~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d-~~~g~~~~l~-~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~ 374 (729)
..+.-+.|+-+-.++....+ .|.+.||-+. ...+++.... -....++...|.| ....++..+..
T Consensus 303 -sDVNVISWnr~~~lLasG~D-dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p------------~e~s~iaasg~ 368 (440)
T KOG0302|consen 303 -SDVNVISWNRREPLLASGGD-DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHP------------HEDSVIAASGE 368 (440)
T ss_pred -CceeeEEccCCcceeeecCC-CceEEEEEhhhccCCCcceeEEeccCCeeEEEecc------------ccCceEEeccC
Confidence 45567789876554444444 6777776332 2334322222 2333444556665 34455556666
Q ss_pred CCeEEEEEEECC
Q 004816 375 NGRSYLGILDDF 386 (729)
Q Consensus 375 ~g~~~ly~~d~~ 386 (729)
+....||-+.++
T Consensus 369 D~QitiWDlsvE 380 (440)
T KOG0302|consen 369 DNQITIWDLSVE 380 (440)
T ss_pred CCcEEEEEeecc
Confidence 666677755543
No 440
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=93.65 E-value=0.17 Score=54.22 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=52.5
Q ss_pred CCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCCc----ccHHHHHHHHHHHHHHHhC
Q 004816 646 CPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRKA----ENIKFTLEQQMVFFARVVG 712 (729)
Q Consensus 646 ~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~~----~~~~~~~~~~~~fl~~~l~ 712 (729)
+|+.|+...-|+.. .+...|+.+|+..|.++.+.+.++-.|+|.+- ....+.-+..++=++..|+
T Consensus 788 Pp~~i~ac~mDP~L--DD~vmfA~kLr~lG~~v~l~vle~lPHGFLnft~ls~E~~~~~~~CI~rl~~~L~ 856 (880)
T KOG4388|consen 788 PPVHIVACAMDPML--DDSVMFARKLRNLGQPVTLRVLEDLPHGFLNFTALSRETRQAAELCIERLRLVLT 856 (880)
T ss_pred CCceEEEeccCcch--hHHHHHHHHHHhcCCceeehhhhcCCccceeHHhhCHHHHHHHHHHHHHHHHHhC
Confidence 57888888888874 67889999999999999999999999998542 2234566677788888887
No 441
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.64 E-value=7.1 Score=37.54 Aligned_cols=219 Identities=11% Similarity=0.126 Sum_probs=101.2
Q ss_pred ceEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecC-CCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 148 GAFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-RFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 148 ~~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SP-dG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
..|....+.++|++-..+.+.++|... ....+.+-+.+. ...+.+-- +|-+.+.+.-. ....++
T Consensus 20 p~w~~~~~sLl~VDi~ag~v~r~D~~q--n~v~ra~ie~p~----~ag~ilpv~~~~q~~~v~~G---------~kf~i~ 84 (310)
T KOG4499|consen 20 PHWDVERQSLLYVDIEAGEVHRYDIEQ--NKVYRAKIEGPP----SAGFILPVEGGPQEFAVGCG---------SKFVIV 84 (310)
T ss_pred CceEEecceEEEEEeccCceehhhhhh--hheEEEEEecCc----ceeEEEEecCCCceEEEeec---------ceEEEE
Confidence 456666778899988888888888876 555544433110 12222211 22222222110 223344
Q ss_pred EcCCCc--eEEe---ee---C--CCeeeeeeeCCCCCeEEEEE-ecCCCC--CCCCcEEEEEEecCCCCeeeeEEecCCC
Q 004816 227 ALNGQN--IQVL---VS---G--SDFYAFPRMDPRGERMAWIE-WHHPNM--PWDKAELWVGYISENGDVYKRVCVAGFD 293 (729)
Q Consensus 227 dl~~g~--~~~l---t~---~--~~~~~~~~~SPDG~~la~~~-~~~~~~--~~~~~~l~~~d~~~~g~~~~~~~~~~~~ 293 (729)
..++-. .+.+ .+ + ..+.+.-..+||||+ |.. +.+.+. ..-...||..-+ ++++ .+..+.-
T Consensus 85 nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gry--y~GtMad~~~~le~~~g~Ly~~~~--~h~v---~~i~~~v 157 (310)
T KOG4499|consen 85 NWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRY--YGGTMADFGDDLEPIGGELYSWLA--GHQV---ELIWNCV 157 (310)
T ss_pred EcccccceeeeeeeccccCchHHhcccccCccCCCCce--eeeeeccccccccccccEEEEecc--CCCc---eeeehhc
Confidence 444211 1111 10 0 123345567999997 433 222211 111345666543 3443 2222221
Q ss_pred CCccccccCceeCCCCc-EEEEEecCCCceEE--EEEEcCCCeE---EEeeccCccccCCcccccCcceeeeeecCCCCE
Q 004816 294 PTIVESPTEPKWSSKGE-LFFVTDRKNGFWNL--HKWIESNNEV---LAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 367 (729)
Q Consensus 294 ~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l--~~~d~~~g~~---~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 367 (729)
.-...++|+.|-+ +||+ +. -...+ |-+|..+|.. +.|.+.... .|.=.+..+..... ..+.
T Consensus 158 ----~IsNgl~Wd~d~K~fY~i-Ds--ln~~V~a~dyd~~tG~~snr~~i~dlrk~--~~~e~~~PDGm~ID----~eG~ 224 (310)
T KOG4499|consen 158 ----GISNGLAWDSDAKKFYYI-DS--LNYEVDAYDYDCPTGDLSNRKVIFDLRKS--QPFESLEPDGMTID----TEGN 224 (310)
T ss_pred ----cCCccccccccCcEEEEE-cc--CceEEeeeecCCCcccccCcceeEEeccC--CCcCCCCCCcceEc----cCCc
Confidence 2335789999988 5554 33 23445 6777888753 344422111 11101111122221 2334
Q ss_pred EEEEEEECCeEEEEEEECCCCce-EeeccCCcceEEe
Q 004816 368 IACSYRQNGRSYLGILDDFGHSL-SLLDIPFTDIDNI 403 (729)
Q Consensus 368 l~~~s~~~g~~~ly~~d~~~g~~-~~lt~~~~~v~~~ 403 (729)
||++.... ..++.+|+.+|++ ..+-.+...+.+.
T Consensus 225 L~Va~~ng--~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 225 LYVATFNG--GTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred EEEEEecC--cEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 54444332 3688889988874 3343444445444
No 442
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.56 E-value=1.3 Score=43.94 Aligned_cols=156 Identities=17% Similarity=0.159 Sum_probs=88.5
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEE---eeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQV---LVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~---lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
.+++..|.|...-|+-.+.+ ..|-++|..-...++ +..+........|.|.|.+|+... +++-
T Consensus 174 evn~l~FHPre~ILiS~srD---------~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT-dHp~---- 239 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRD---------NTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT-DHPT---- 239 (430)
T ss_pred cccceeecchhheEEeccCC---------CeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec-CCCc----
Confidence 35677899988755443332 245566765322221 222334456678999999887544 5543
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEEEEEcCCCe-EEEee--ccCcccc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNE-VLAIY--SLDAEFS 345 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~--~~~~~~~ 345 (729)
+.++|+. +-+. -+..+.+.+....+..+.+|+.|+||.+... .|.-.|| |--+++ ++.+- .+..++
T Consensus 240 ---~rlYdv~-T~Qc---fvsanPd~qht~ai~~V~Ys~t~~lYvTaSk-DG~Iklw--DGVS~rCv~t~~~AH~gsev- 308 (430)
T KOG0640|consen 240 ---LRLYDVN-TYQC---FVSANPDDQHTGAITQVRYSSTGSLYVTASK-DGAIKLW--DGVSNRCVRTIGNAHGGSEV- 308 (430)
T ss_pred ---eeEEecc-ceeE---eeecCcccccccceeEEEecCCccEEEEecc-CCcEEee--ccccHHHHHHHHhhcCCcee-
Confidence 8888887 3221 1111222111256778899999998888877 6766665 432222 11111 111122
Q ss_pred CCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEE
Q 004816 346 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILD 384 (729)
Q Consensus 346 ~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d 384 (729)
.+..|. ++++++.++..+....||.+.
T Consensus 309 --------cSa~Ft----kn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 309 --------CSAVFT----KNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred --------eeEEEc----cCCeEEeecCCcceeeeeeec
Confidence 233444 666777788777777777664
No 443
>PHA03098 kelch-like protein; Provisional
Probab=93.46 E-value=4.5 Score=45.69 Aligned_cols=192 Identities=6% Similarity=-0.098 Sum_probs=98.5
Q ss_pred eEEEEEEcCCCceEEeeeCCCeeeee-eeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccc
Q 004816 221 TEIVAIALNGQNIQVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVES 299 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~~~~~~-~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~ 299 (729)
..++.+|+.+++...+..-...-... ...-+| +|+.+...... .....++++|.. +++... .+..... ..
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~-~lyv~GG~~~~--~~~~~v~~yd~~-~~~W~~---~~~lp~~--r~ 381 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNN-RIYVIGGIYNS--ISLNTVESWKPG-ESKWRE---EPPLIFP--RY 381 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEECC-EEEEEeCCCCC--EecceEEEEcCC-CCceee---CCCcCcC--Cc
Confidence 47899999988777665422111111 112244 46655522211 123568888887 555422 2211100 11
Q ss_pred ccCceeCCCCcEEEEEecCCC---ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC-
Q 004816 300 PTEPKWSSKGELFFVTDRKNG---FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN- 375 (729)
Q Consensus 300 ~~~~~wspDG~l~~~~~~~~g---~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~- 375 (729)
... .-.-+|++|.......+ ...++++|+.+++++.+.+.... ... ..... -++.||+.....
T Consensus 382 ~~~-~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~----r~~---~~~~~-----~~~~iyv~GG~~~ 448 (534)
T PHA03098 382 NPC-VVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS----HYG---GCAIY-----HDGKIYVIGGISY 448 (534)
T ss_pred cce-EEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc----ccC---ceEEE-----ECCEEEEECCccC
Confidence 111 22345666655432111 25688999999988877643211 110 01111 234555544321
Q ss_pred -----CeEEEEEEECCCCceEeeccCCcc--eEEeeeeCCEEEEEEeCCCC--CceEEEEEcCCCcce
Q 004816 376 -----GRSYLGILDDFGHSLSLLDIPFTD--IDNITLGNDCLFVEGASGVE--PSSVAKVTLDDHKLK 434 (729)
Q Consensus 376 -----g~~~ly~~d~~~g~~~~lt~~~~~--v~~~~~~~~~~~~~~~~~~~--~~~ly~~d~~~~~~~ 434 (729)
....++.+|+.+++++.+...... ...+..-++.++++++.... ...++.+|+++++.+
T Consensus 449 ~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~ 516 (534)
T PHA03098 449 IDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT 516 (534)
T ss_pred CCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence 134599999999999887642211 11222236677777654432 245888888887753
No 444
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=93.41 E-value=0.12 Score=50.60 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.7
Q ss_pred CCcEEEEEcChHHHHHHHHHh
Q 004816 570 EKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 570 ~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..+|.++|||+||.++-.++.
T Consensus 77 ~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 77 IRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred cccceEEEecccHHHHHHHHH
Confidence 368999999999999876664
No 445
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=93.34 E-value=0.47 Score=50.54 Aligned_cols=112 Identities=12% Similarity=0.048 Sum_probs=73.8
Q ss_pred CCCCEEEEEcCCCCCCcccc-c--hhhhHHHhhCCcEEEEecCCCCCCCchhHHHh------hccCCCcccHHHHHHHHH
Q 004816 490 EKPPLLVKSHGGPTSEARGI-L--NLSIQYWTSRGWAFVDVNYGGSTGYGREFRER------LLGRWGIVDVNDCCSCAT 560 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~-~--~~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~------~~~~~~~~~~~D~~~~~~ 560 (729)
...|+.|++-|.......+. . ..+.+.-.+.|-.|+.+.+|= ||.+.... +..---.+.+.|+...|+
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~LSs~QALaDla~fI~ 160 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYLSSLQALADLAEFIK 160 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhhhHHHHHHHHHHHHH
Confidence 34588888877422221121 1 134455556799999999983 34321110 110011234788888898
Q ss_pred HHHhCC-CCCCCcEEEEEcChHHHHHHHHHh-CCCcceEEEEeccc
Q 004816 561 FLVGSG-KADEKRLCITGGSAGGYTTLAALA-FRDTFKAGASLYGV 604 (729)
Q Consensus 561 ~l~~~~-~~d~~ri~i~G~S~GG~~a~~~~~-~~~~~~a~v~~~~~ 604 (729)
.+-.+. .-+..+.+.+|.||-|.++.++=. +|+.+.+.|+-++.
T Consensus 161 ~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSap 206 (514)
T KOG2182|consen 161 AMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAP 206 (514)
T ss_pred HHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccc
Confidence 887774 445569999999999999999877 99999999987764
No 446
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=93.33 E-value=2.3 Score=43.45 Aligned_cols=110 Identities=14% Similarity=0.132 Sum_probs=69.3
Q ss_pred eeeecceecCCCCEEEEE-EeccCCCCCCcceEEEEEEcCCCceE-EeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 191 VSYADGIFDPRFNRYVTV-REDRRQDALNSTTEIVAIALNGQNIQ-VLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~-~~~~~~~~~~~~~~l~~~dl~~g~~~-~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
..+.+..|++. . ++|. +.+ +.|.++|+.+|... .++ +.........+|+.+.|+-.+.+
T Consensus 261 ~~Vs~V~w~d~-~-v~yS~SwD---------HTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssd------- 321 (423)
T KOG0313|consen 261 EPVSSVVWSDA-T-VIYSVSWD---------HTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSD------- 321 (423)
T ss_pred cceeeEEEcCC-C-ceEeeccc---------ceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCC-------
Confidence 45677889883 3 4554 444 46999999987654 444 34455667889998877755532
Q ss_pred CcEEEEEEecC-CCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCceEEE
Q 004816 269 KAELWVGYISE-NGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGFWNLH 325 (729)
Q Consensus 269 ~~~l~~~d~~~-~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~l~ 325 (729)
..|.++|... +|... ...+.++. ..+..+.|+|-....|++....+...||
T Consensus 322 -r~irl~DPR~~~gs~v-~~s~~gH~----nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 322 -RHIRLWDPRTGDGSVV-SQSLIGHK----NWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred -CceeecCCCCCCCcee-EEeeecch----hhhhheecCCCCceEEEEEecCCeEEEE
Confidence 2377788762 33432 33455665 6678899999877444443325655565
No 447
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=93.28 E-value=9.4 Score=37.87 Aligned_cols=155 Identities=11% Similarity=0.069 Sum_probs=84.4
Q ss_pred ccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcc----cccccccCCce--EEEECCEEEEEEC
Q 004816 90 RLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAV----RTTAQEYGGGA--FRIFGDTVIFSNY 162 (729)
Q Consensus 90 ~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~----~~~~~~~~~~~--~~~~~~~i~~~~~ 162 (729)
.+..+++.+ .+++.. .+. .+|.+.+|-....+.-+..-++....+. ....|.|++.. |.|.+..++.+..
T Consensus 45 svNsL~id~tegryml-SGg--adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS 121 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYML-SGG--ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS 121 (397)
T ss_pred ccceeeeccccceEEe-ecC--CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc
Confidence 556677776 444333 222 2455556544332111222233222221 12345566543 4555666666666
Q ss_pred CCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCC--CEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC-
Q 004816 163 KDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRF--NRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG- 239 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG--~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~- 239 (729)
.+-.|-+||..+ -+....-.- +..+..-+|||=. .-|+.+..+. .++-+-|+++|.-.-...|
T Consensus 122 FDhtlKVWDtnT--lQ~a~~F~m----e~~VYshamSp~a~sHcLiA~gtr~--------~~VrLCDi~SGs~sH~LsGH 187 (397)
T KOG4283|consen 122 FDHTLKVWDTNT--LQEAVDFKM----EGKVYSHAMSPMAMSHCLIAAGTRD--------VQVRLCDIASGSFSHTLSGH 187 (397)
T ss_pred ccceEEEeeccc--ceeeEEeec----CceeehhhcChhhhcceEEEEecCC--------CcEEEEeccCCcceeeeccc
Confidence 677899999876 322111111 1334445688843 3344443332 4577779999987554444
Q ss_pred CCeeeeeeeCCCCCeEEEEEec
Q 004816 240 SDFYAFPRMDPRGERMAWIEWH 261 (729)
Q Consensus 240 ~~~~~~~~~SPDG~~la~~~~~ 261 (729)
-+..-...|||...+|.++...
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsa 209 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSA 209 (397)
T ss_pred cCceEEEEeccCceeEEEecCC
Confidence 3456678999999999988743
No 448
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.25 E-value=23 Score=42.24 Aligned_cols=60 Identities=12% Similarity=0.090 Sum_probs=40.9
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEe
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEW 260 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~ 260 (729)
.+..+.|--|+..|.++... +.|.++|.++.....+..-.......+||||++.++++..
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~---------G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITAL---------GDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEEecC---------CcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 44555666677776555442 3577778777666555554455667899999999999883
No 449
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=93.21 E-value=1.1 Score=44.66 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=62.3
Q ss_pred ecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc----eEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCC
Q 004816 194 ADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN----IQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDK 269 (729)
Q Consensus 194 ~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~----~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~ 269 (729)
..-+|++|+..++....++. -+||.. .+.+ ...|.......++..|+|.+.+|.-.+.|+.
T Consensus 14 tchAwn~drt~iAv~~~~~e-------vhiy~~--~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn------ 78 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNHE-------VHIYSM--LGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN------ 78 (361)
T ss_pred eeeeecCCCceEEeccCCce-------EEEEEe--cCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC------
Confidence 33479999999887766541 345544 4443 2334444566788999999999987775543
Q ss_pred cEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEE
Q 004816 270 AELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELF 312 (729)
Q Consensus 270 ~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~ 312 (729)
-|++....+++..+...+...+ .....+.|+|.+..+
T Consensus 79 --ayVw~~~~~~~WkptlvLlRiN----rAAt~V~WsP~enkF 115 (361)
T KOG1523|consen 79 --AYVWTQPSGGTWKPTLVLLRIN----RAATCVKWSPKENKF 115 (361)
T ss_pred --ccccccCCCCeeccceeEEEec----cceeeEeecCcCceE
Confidence 3444442256655544444454 556788999998733
No 450
>PHA03098 kelch-like protein; Provisional
Probab=93.09 E-value=7 Score=44.12 Aligned_cols=200 Identities=10% Similarity=-0.083 Sum_probs=97.8
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC-eee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD-FYA 244 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~-~~~ 244 (729)
++|.+|+.+ .+-..++.-+ ..+.......-+|+ |+.+..... ......++++|..+++.+.+.+-+. ...
T Consensus 312 ~v~~yd~~~--~~W~~~~~~~---~~R~~~~~~~~~~~-lyv~GG~~~---~~~~~~v~~yd~~~~~W~~~~~lp~~r~~ 382 (534)
T PHA03098 312 SVVSYDTKT--KSWNKVPELI---YPRKNPGVTVFNNR-IYVIGGIYN---SISLNTVESWKPGESKWREEPPLIFPRYN 382 (534)
T ss_pred cEEEEeCCC--CeeeECCCCC---cccccceEEEECCE-EEEEeCCCC---CEecceEEEEcCCCCceeeCCCcCcCCcc
Confidence 689999987 6666665542 11222222233444 444432221 1123568889998877666543211 111
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCC-----
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKN----- 319 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~----- 319 (729)
...-.-+| +|+.......+. .....++++|+. +++.... ...... .. ......-+++||.......
T Consensus 383 ~~~~~~~~-~iYv~GG~~~~~-~~~~~v~~yd~~-t~~W~~~---~~~p~~--r~-~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 383 PCVVNVNN-LIYVIGGISKND-ELLKTVECFSLN-TNKWSKG---SPLPIS--HY-GGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred ceEEEECC-EEEEECCcCCCC-cccceEEEEeCC-CCeeeec---CCCCcc--cc-CceEEEECCEEEEECCccCCCCCc
Confidence 11122244 565554211111 013568899987 5554322 211100 11 1223334666665543211
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC---eEEEEEEECCCCceEeecc
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDI 395 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g---~~~ly~~d~~~g~~~~lt~ 395 (729)
....++++|+.+++++.+.... .+.+.. ..... + +.||+.....+ ...++.+|+++.+++.+..
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~~~----~~r~~~---~~~~~----~-~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSSLN----FPRINA---SLCIF----N-NKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ccceEEEecCCCCceeeCCCCC----cccccc---eEEEE----C-CEEEEEcCCcCCcccceeEEEeCCCCEEEecCC
Confidence 1345899999999988875322 111111 11111 3 34554443221 3468888888888877754
No 451
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=93.00 E-value=0.25 Score=51.14 Aligned_cols=85 Identities=14% Similarity=0.063 Sum_probs=58.6
Q ss_pred hhCCcEEEEecCCCCC---CCchh-HHHhhccC--CCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh-
Q 004816 518 TSRGWAFVDVNYGGST---GYGRE-FRERLLGR--WGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA- 590 (729)
Q Consensus 518 a~~G~~v~~~d~rGs~---g~g~~-~~~~~~~~--~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~- 590 (729)
.+.+-.++.+.+|=-| .+|.. +.....-. ...+...|....+.+|+.........|+++|.|+||+++.++=.
T Consensus 108 p~~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlK 187 (492)
T KOG2183|consen 108 PELKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLK 187 (492)
T ss_pred HhhCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhc
Confidence 3457788888877422 24443 22211111 12334889999999998886666788999999999999999876
Q ss_pred CCCcceEEEEec
Q 004816 591 FRDTFKAGASLY 602 (729)
Q Consensus 591 ~~~~~~a~v~~~ 602 (729)
+|..+.++.+.+
T Consensus 188 YPHiv~GAlAaS 199 (492)
T KOG2183|consen 188 YPHIVLGALAAS 199 (492)
T ss_pred Chhhhhhhhhcc
Confidence 888777766544
No 452
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.91 E-value=6.1 Score=42.82 Aligned_cols=144 Identities=9% Similarity=0.046 Sum_probs=84.2
Q ss_pred EEEECCCCcEEEEeCCCCCCCC-eecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe
Q 004816 158 IFSNYKDQRLYKHSIDSKDSSP-LPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL 236 (729)
Q Consensus 158 ~~~~~~~~~l~~~d~~~~~~~~-~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l 236 (729)
+......|.++++++.+ ++. .+++.+. ...++....|+-+ -.++|+.... ..+..++...+...++
T Consensus 73 lvlgt~~g~v~~ys~~~--g~it~~~st~~--h~~~v~~~~~~~~-~~ciyS~~ad--------~~v~~~~~~~~~~~~~ 139 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAG--GEITAKLSTDK--HYGNVNEILDAQR-LGCIYSVGAD--------LKVVYILEKEKVIIRI 139 (541)
T ss_pred EEeecCCccEEEEEecC--CeEEEEEecCC--CCCcceeeecccc-cCceEecCCc--------eeEEEEecccceeeee
Confidence 33333456899999987 543 3444321 1223344334433 3345555433 4677788887777666
Q ss_pred ee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCC--Cc--E
Q 004816 237 VS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK--GE--L 311 (729)
Q Consensus 237 t~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD--G~--l 311 (729)
.. ........+.||||+.|+..+ .+|-++|++ ++++ +..++++. .-+..+.|..+ |- .
T Consensus 140 ~~~~~~~~~sl~is~D~~~l~~as----------~~ik~~~~~-~kev--v~~ftgh~----s~v~t~~f~~~~~g~~G~ 202 (541)
T KOG4547|consen 140 WKEQKPLVSSLCISPDGKILLTAS----------RQIKVLDIE-TKEV--VITFTGHG----SPVRTLSFTTLIDGIIGK 202 (541)
T ss_pred eccCCCccceEEEcCCCCEEEecc----------ceEEEEEcc-CceE--EEEecCCC----cceEEEEEEEeccccccc
Confidence 54 344567789999999887544 459999998 7776 66777775 44444555443 32 3
Q ss_pred EEEEec-CCCceEEEEEEcCC
Q 004816 312 FFVTDR-KNGFWNLHKWIESN 331 (729)
Q Consensus 312 ~~~~~~-~~g~~~l~~~d~~~ 331 (729)
+|.+.. ..-...+|.++-+.
T Consensus 203 ~vLssa~~~r~i~~w~v~~~~ 223 (541)
T KOG4547|consen 203 YVLSSAAAERGITVWVVEKED 223 (541)
T ss_pred eeeeccccccceeEEEEEccc
Confidence 444433 12234566666533
No 453
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=92.89 E-value=3 Score=45.37 Aligned_cols=142 Identities=12% Similarity=0.016 Sum_probs=79.2
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee--e--CCC
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV--S--GSD 241 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt--~--~~~ 241 (729)
+|.++...+ ++.+.|...- .+...-+..||-...+.+++.+..-...+...-+-++++...++.+++. . -..
T Consensus 185 Nl~L~~~~~--~klEvL~yir--TE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s 260 (545)
T PF11768_consen 185 NLHLLSCSG--GKLEVLSYIR--TENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPS 260 (545)
T ss_pred cEEEEEecC--CcEEEEEEEE--ecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCC
Confidence 677777766 5666654320 0011245567773333344444321111122345556666666666552 2 233
Q ss_pred eeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCc
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF 321 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~ 321 (729)
.....++||+.++++..-. +..|.++|.. .+.. ...... ..+..++|.|||.++++.+. +|.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~--------DgSiiLyD~~-~~~t----~~~ka~----~~P~~iaWHp~gai~~V~s~-qGe 322 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCE--------DGSIILYDTT-RGVT----LLAKAE----FIPTLIAWHPDGAIFVVGSE-QGE 322 (545)
T ss_pred cceEEecCcccceEEEEec--------CCeEEEEEcC-CCee----eeeeec----ccceEEEEcCCCcEEEEEcC-Cce
Confidence 4556789999999886652 3448899876 3432 222222 34467899999997777766 676
Q ss_pred eEEEEEEc
Q 004816 322 WNLHKWIE 329 (729)
Q Consensus 322 ~~l~~~d~ 329 (729)
-++|=+-+
T Consensus 323 lQ~FD~AL 330 (545)
T PF11768_consen 323 LQCFDMAL 330 (545)
T ss_pred EEEEEeec
Confidence 66653333
No 454
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=92.83 E-value=7.2 Score=40.38 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=34.0
Q ss_pred cccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeecc-CccccCCcccccC
Q 004816 299 SPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSL-DAEFSRPLWVFGI 353 (729)
Q Consensus 299 ~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~-~~~~~~~~w~~~~ 353 (729)
.+...+|+||+. +.+.+.+ ..++.+|+..|+...+..+ ...+....|.+.+
T Consensus 125 diydL~Ws~d~~~l~s~s~d----ns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~ 177 (434)
T KOG1009|consen 125 DIYDLAWSPDSNFLVSGSVD----NSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN 177 (434)
T ss_pred chhhhhccCCCceeeeeecc----ceEEEEEeccceeEeeccccccccceeecchhh
Confidence 445789999998 5554433 4577788888887777643 3344556777643
No 455
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=92.77 E-value=10 Score=42.30 Aligned_cols=242 Identities=6% Similarity=-0.045 Sum_probs=0.0
Q ss_pred eEEEECCEEEEEECCCCcEEEEeCCCCCCCCeecCC--CCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 149 AFRIFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITP--DYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 149 ~~~~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~--~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
++..+++.+.+-. ..|-||+++..+ +..+.++. . .....-..+|++...+++..... .-.+|.+
T Consensus 40 c~dst~~~l~~Gs-S~G~lyl~~R~~--~~~~~~~~~~~----~~~~~~~~vs~~e~lvAagt~~g-------~V~v~ql 105 (726)
T KOG3621|consen 40 CVDATEEYLAMGS-SAGSVYLYNRHT--GEMRKLKNEGA----TGITCVRSVSSVEYLVAAGTASG-------RVSVFQL 105 (726)
T ss_pred EeecCCceEEEec-ccceEEEEecCc--hhhhcccccCc----cceEEEEEecchhHhhhhhcCCc-------eEEeehh
Q ss_pred EcCC-CceEEeeeCCC----eeeeeeeCCCCCeEEEEEecCCCCCCCCcEE-----------------------------
Q 004816 227 ALNG-QNIQVLVSGSD----FYAFPRMDPRGERMAWIEWHHPNMPWDKAEL----------------------------- 272 (729)
Q Consensus 227 dl~~-g~~~~lt~~~~----~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l----------------------------- 272 (729)
.... +....++.... ..+...||+||+++++-. ....|
T Consensus 106 ~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD--------~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD 177 (726)
T KOG3621|consen 106 NKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD--------SQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLD 177 (726)
T ss_pred hccCCCcceeeccccccCCceEEEEEecccccEEeecC--------CCceEEEEEechhhhhccccceeeccCcceEEee
Q ss_pred --------------EEEEecCCCCeeeeEEecCCCCCccccccCceeCCC----Cc-EEEEEecCCCceEEEEEEcCCCe
Q 004816 273 --------------WVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSK----GE-LFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 273 --------------~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspD----G~-l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
.+.+.+ .+++.++-.-+... ....+.+|-|. .+ .+|.+.. ..++|.+|.++.-
T Consensus 178 ~~q~~LLVStl~r~~Lc~tE-~eti~QIG~k~R~~----~~~~GACF~~g~~~~q~~~IycaRP---G~RlWead~~G~V 249 (726)
T KOG3621|consen 178 YLQSYLLVSTLTRCILCQTE-AETITQIGKKPRKS----LIDFGACFFPGQCKAQKPQIYCARP---GLRLWEADFAGEV 249 (726)
T ss_pred cccceehHhhhhhhheeecc-hhHHHHhcCCCcCC----ccccceEEeeccccCCCceEEEecC---CCceEEeecceeE
Q ss_pred EEEeeccCccccCCcccccCcc--------------------eeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEee
Q 004816 334 VLAIYSLDAEFSRPLWVFGINS--------------------YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLL 393 (729)
Q Consensus 334 ~~~l~~~~~~~~~~~w~~~~~~--------------------~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~l 393 (729)
.+...-.+.-...|.|.....+ ..++ .+..++.-.+.. ||+++....++..-
T Consensus 250 ~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l----~~~~vLa~te~G----iyv~d~~~~~v~l~ 321 (726)
T KOG3621|consen 250 IKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL----HSDRVLAWTEVG----IYVFDSNNSQVYLW 321 (726)
T ss_pred EEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe----ecceEEEeecce----EEEEEeccceEEEe
Q ss_pred ccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 394 DIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 394 t~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.....+|.+++..++.++++..+. .++.+.+.+..
T Consensus 322 se~~~DI~dVs~~~neiFvL~~d~----~l~~~sv~s~q 356 (726)
T KOG3621|consen 322 SEGGHDILDVSHCGNEIFVLNLDR----GLKVESVASRQ 356 (726)
T ss_pred ecCCCceeEEeecCceEEEEecCC----ceeEEEeehhH
No 456
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=92.77 E-value=2.2 Score=47.88 Aligned_cols=200 Identities=15% Similarity=0.171 Sum_probs=115.6
Q ss_pred CceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCcEEEE
Q 004816 92 GGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQRLYKH 170 (729)
Q Consensus 92 ~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 170 (729)
-++.++= .+.|||++... + .|-+.... ++++..++..+ +.++-+-+..+....++|.+.....|-+.
T Consensus 1028 VGidfDC~e~mvyWtDv~g----~-SI~rasL~-G~Ep~ti~n~~------L~SPEGiAVDh~~Rn~ywtDS~lD~IevA 1095 (1289)
T KOG1214|consen 1028 VGIDFDCRERMVYWTDVAG----R-SISRASLE-GAEPETIVNSG------LISPEGIAVDHIRRNMYWTDSVLDKIEVA 1095 (1289)
T ss_pred eeeecccccceEEEeecCC----C-cccccccc-CCCCceeeccc------CCCccceeeeeccceeeeeccccchhhee
Confidence 3555555 67788887632 2 23333333 23555555433 23334555666777888887666677777
Q ss_pred eCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeee-CCCeeeeeeeC
Q 004816 171 SIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVS-GSDFYAFPRMD 249 (729)
Q Consensus 171 d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~-~~~~~~~~~~S 249 (729)
.|++ .+.+.|...+ -.....++..|=+..|+|+.++.. +..|-..++++...|.|.. +-+--++..|.
T Consensus 1096 ~LdG--~~rkvLf~td---LVNPR~iv~D~~rgnLYwtDWnRe------nPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1096 LLDG--SERKVLFYTD---LVNPRAIVVDPIRGNLYWTDWNRE------NPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred ecCC--ceeeEEEeec---ccCcceEEeecccCceeecccccc------CCcceeeccCCccceEEeecccCCCCCceeC
Confidence 7876 5555554331 233366778898888998876653 2357777888766666654 33445678899
Q ss_pred CCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEE
Q 004816 250 PRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWI 328 (729)
Q Consensus 250 PDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d 328 (729)
|..+.|.|+.-.. .+|-....+ |. .++.++.+.. + -+....+++ +||+--+ ...|..++
T Consensus 1165 pfs~~LCWvDAGt-------~rleC~~p~--g~-gRR~i~~~Lq-----Y--PF~itsy~~~fY~TDWk---~n~vvsv~ 1224 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAGT-------KRLECTLPD--GT-GRRVIQNNLQ-----Y--PFSITSYADHFYHTDWK---RNGVVSVN 1224 (1289)
T ss_pred cccceeeEEecCC-------cceeEecCC--CC-cchhhhhccc-----C--ceeeeeccccceeeccc---cCceEEee
Confidence 9999999987322 224333333 33 2233444432 2 233445666 6655333 23466666
Q ss_pred cCCCeE
Q 004816 329 ESNNEV 334 (729)
Q Consensus 329 ~~~g~~ 334 (729)
..+++.
T Consensus 1225 ~~~~~~ 1230 (1289)
T KOG1214|consen 1225 KHSGQF 1230 (1289)
T ss_pred cccccc
Confidence 655543
No 457
>PHA02713 hypothetical protein; Provisional
Probab=92.64 E-value=13 Score=42.10 Aligned_cols=215 Identities=9% Similarity=0.024 Sum_probs=109.7
Q ss_pred ECCEEEEEECCC------CcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEE
Q 004816 153 FGDTVIFSNYKD------QRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAI 226 (729)
Q Consensus 153 ~~~~i~~~~~~~------~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~ 226 (729)
-++.|+...+.. ..++.+|+.+ ..-..+.+-+ ..|.......-+|+ |+.+....... ....+.++
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~--n~W~~~~~m~---~~R~~~~~~~~~g~-IYviGG~~~~~---~~~sve~Y 372 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIEN--KIHVELPPMI---KNRCRFSLAVIDDT-IYAIGGQNGTN---VERTIECY 372 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCC--CeEeeCCCCc---chhhceeEEEECCE-EEEECCcCCCC---CCceEEEE
Confidence 456665554422 2589999887 5555555431 11212122233554 55443322111 13468888
Q ss_pred EcCCCceEEeeeCCCeeeee-eeCCCCCeEEEEEecCCCCCC----------------CCcEEEEEEecCCCCeeeeEEe
Q 004816 227 ALNGQNIQVLVSGSDFYAFP-RMDPRGERMAWIEWHHPNMPW----------------DKAELWVGYISENGDVYKRVCV 289 (729)
Q Consensus 227 dl~~g~~~~lt~~~~~~~~~-~~SPDG~~la~~~~~~~~~~~----------------~~~~l~~~d~~~~g~~~~~~~~ 289 (729)
|+.+.+-+.+.+-+...... .-.-+| +|+.+........+ ....+.++|.. +.+... .
T Consensus 373 dp~~~~W~~~~~mp~~r~~~~~~~~~g-~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~-td~W~~---v 447 (557)
T PHA02713 373 TMGDDKWKMLPDMPIALSSYGMCVLDQ-YIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV-NNIWET---L 447 (557)
T ss_pred ECCCCeEEECCCCCcccccccEEEECC-EEEEEeCCCcccccccccccccccccccccccceEEEECCC-CCeEee---c
Confidence 99887766665422111111 112244 57666532211000 12458888877 554322 2
Q ss_pred cCCCCCccccccCceeCCCCcEEEEEecCC--Cc-eEEEEEEcCC-CeEEEeeccCccccCCcccccCcceeeeeecCCC
Q 004816 290 AGFDPTIVESPTEPKWSSKGELFFVTDRKN--GF-WNLHKWIESN-NEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEK 365 (729)
Q Consensus 290 ~~~~~~~~~~~~~~~wspDG~l~~~~~~~~--g~-~~l~~~d~~~-g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~ 365 (729)
+..... .. ....-.-+|+||....... +. ..+.++|+++ ++++.+.+....... ..... -+
T Consensus 448 ~~m~~~--r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-------~~~~~-----~~ 512 (557)
T PHA02713 448 PNFWTG--TI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-------LHTIL-----HD 512 (557)
T ss_pred CCCCcc--cc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-------ceeEE-----EC
Confidence 222100 11 1122344677777654311 11 3478999998 788887744321111 11222 24
Q ss_pred CEEEEEEEECCeEEEEEEECCCCceEeeccC
Q 004816 366 NLIACSYRQNGRSYLGILDDFGHSLSLLDIP 396 (729)
Q Consensus 366 ~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~ 396 (729)
+.||+....+|...+..+|+.+.+++.+...
T Consensus 513 ~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 513 NTIMMLHCYESYMLQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred CEEEEEeeecceeehhhcCcccccccchhhh
Confidence 5788877777766778888888888877653
No 458
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=92.50 E-value=1.9 Score=44.65 Aligned_cols=142 Identities=14% Similarity=0.069 Sum_probs=77.2
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEE-------
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFS------- 160 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~------- 160 (729)
-++=++++.. ++.+|.-+. =.-|+..+.. ++....+++...+..-++. ....... .+.++|+
T Consensus 115 GRPLGl~f~~~ggdL~VaDA------YlGL~~V~p~-g~~a~~l~~~~~G~~~kf~--N~ldI~~-~g~vyFTDSSsk~~ 184 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADA------YLGLLKVGPE-GGLAELLADEAEGKPFKFL--NDLDIDP-EGVVYFTDSSSKYD 184 (376)
T ss_pred CCcceEEeccCCCeEEEEec------ceeeEEECCC-CCcceeccccccCeeeeec--CceeEcC-CCeEEEeccccccc
Confidence 3566888888 777777552 2236666666 2344555443322221110 0000111 1122222
Q ss_pred ----------ECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC
Q 004816 161 ----------NYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG 230 (729)
Q Consensus 161 ----------~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~ 230 (729)
....|+|+.+|..+ +..+.|..+ -...+..++|||+++++++.... .+|-++=+.+
T Consensus 185 ~rd~~~a~l~g~~~GRl~~YD~~t--K~~~VLld~----L~F~NGlaLS~d~sfvl~~Et~~--------~ri~rywi~g 250 (376)
T KOG1520|consen 185 RRDFVFAALEGDPTGRLFRYDPST--KVTKVLLDG----LYFPNGLALSPDGSFVLVAETTT--------ARIKRYWIKG 250 (376)
T ss_pred hhheEEeeecCCCccceEEecCcc--cchhhhhhc----ccccccccCCCCCCEEEEEeecc--------ceeeeeEecC
Confidence 22357999999988 777777765 22337788999999988875432 3444444444
Q ss_pred ---CceEEeee-CCCeeeeeeeCCCCCe
Q 004816 231 ---QNIQVLVS-GSDFYAFPRMDPRGER 254 (729)
Q Consensus 231 ---g~~~~lt~-~~~~~~~~~~SPDG~~ 254 (729)
|+...+++ -+++--+.+-+++|.+
T Consensus 251 ~k~gt~EvFa~~LPG~PDNIR~~~~G~f 278 (376)
T KOG1520|consen 251 PKAGTSEVFAEGLPGYPDNIRRDSTGHF 278 (376)
T ss_pred CccCchhhHhhcCCCCCcceeECCCCCE
Confidence 33344444 2344344566777763
No 459
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=25 Score=40.54 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=129.3
Q ss_pred CccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCC-CCcccccccccCCceEEEECCEEEEEECCCC-
Q 004816 89 KRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPK-EYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQ- 165 (729)
Q Consensus 89 ~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 165 (729)
.++.++.+.| .-|+.-.- ..|.++||-+.-+ .-..-+++ +..+| ...+.++.-+|++..+.
T Consensus 10 sRvKglsFHP~rPwILtsl----HsG~IQlWDYRM~---tli~rFdeHdGpVR---------gv~FH~~qplFVSGGDDy 73 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSL----HSGVIQLWDYRMG---TLIDRFDEHDGPVR---------GVDFHPTQPLFVSGGDDY 73 (1202)
T ss_pred ccccceecCCCCCEEEEee----cCceeeeehhhhh---hHHhhhhccCCccc---------eeeecCCCCeEEecCCcc
Confidence 4677899998 66665433 4788999876433 11111111 11222 23444555566665544
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCC-eee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSD-FYA 244 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~-~~~ 244 (729)
.|-+|+.+.. .-.-.|... -.-+....|.+.=-+|+-.+++ +.|.+++-.+++...+..|.. +..
T Consensus 74 kIkVWnYk~r-rclftL~GH----lDYVRt~~FHheyPWIlSASDD---------QTIrIWNwqsr~~iavltGHnHYVM 139 (1202)
T KOG0292|consen 74 KIKVWNYKTR-RCLFTLLGH----LDYVRTVFFHHEYPWILSASDD---------QTIRIWNWQSRKCIAVLTGHNHYVM 139 (1202)
T ss_pred EEEEEecccc-eehhhhccc----cceeEEeeccCCCceEEEccCC---------CeEEEEeccCCceEEEEecCceEEE
Confidence 6777776641 112233433 1233555677777777655554 468888988877665544544 444
Q ss_pred eeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecC-------CC-------------------CeeeeEEecCCCCCccc
Q 004816 245 FPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISE-------NG-------------------DVYKRVCVAGFDPTIVE 298 (729)
Q Consensus 245 ~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~-------~g-------------------~~~~~~~~~~~~~~~~~ 298 (729)
-.+|.|....|+-.+.|. .|.++|+.+ .| ...-..++.+++ .
T Consensus 140 cAqFhptEDlIVSaSLDQ--------TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD----R 207 (1202)
T KOG0292|consen 140 CAQFHPTEDLIVSASLDQ--------TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD----R 207 (1202)
T ss_pred eeccCCccceEEEecccc--------eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc----c
Confidence 568999888777665332 355666541 01 000122445555 5
Q ss_pred cccCceeCCCCcEEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC
Q 004816 299 SPTEPKWSSKGELFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG 376 (729)
Q Consensus 299 ~~~~~~wspDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g 376 (729)
++...+|.|---|++...+ .-+-.||+++. +..+..=+ .... ..+.+.|- ..+-++.+..+|+
T Consensus 208 GVNwaAfhpTlpliVSG~D-DRqVKlWrmne-tKaWEvDtcrgH~n---------nVssvlfh----p~q~lIlSnsEDk 272 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGAD-DRQVKLWRMNE-TKAWEVDTCRGHYN---------NVSSVLFH----PHQDLILSNSEDK 272 (1202)
T ss_pred ccceEEecCCcceEEecCC-cceeeEEEecc-ccceeehhhhcccC---------CcceEEec----CccceeEecCCCc
Confidence 5666667664335555444 44567888864 44333322 1111 12234443 3334666776777
Q ss_pred eEEEEEEE
Q 004816 377 RSYLGILD 384 (729)
Q Consensus 377 ~~~ly~~d 384 (729)
..++|-++
T Consensus 273 sirVwDm~ 280 (1202)
T KOG0292|consen 273 SIRVWDMT 280 (1202)
T ss_pred cEEEEecc
Confidence 77777554
No 460
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.34 E-value=5.8 Score=44.34 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=58.6
Q ss_pred CCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCC--------Cee-------------eeeeeCCCCCeEEEEE
Q 004816 201 RFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGS--------DFY-------------AFPRMDPRGERMAWIE 259 (729)
Q Consensus 201 dG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~--------~~~-------------~~~~~SPDG~~la~~~ 259 (729)
||++ +|+-+.. +.+|-+++++.=+..+++.-+ .+. ...=++|||+.|.-.+
T Consensus 140 dGr~-~findk~-------n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ 211 (635)
T PRK02888 140 DGRY-LFINDKA-------NTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPK 211 (635)
T ss_pred ceeE-EEEecCC-------CcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeeccc
Confidence 7886 5665543 367889998876555554311 000 0112577888663221
Q ss_pred ecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEec-CCCceEEEEEEcCC
Q 004816 260 WHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDR-KNGFWNLHKWIESN 331 (729)
Q Consensus 260 ~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~-~~g~~~l~~~d~~~ 331 (729)
. ....+.++|.+ +-++.+.....+ ......+++||+.+|++.. ......+..++...
T Consensus 212 -e------y~~~vSvID~e-tmeV~~qV~Vdg-------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e 269 (635)
T PRK02888 212 -K------YRSLFTAVDAE-TMEVAWQVMVDG-------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAE 269 (635)
T ss_pred -c------eeEEEEEEECc-cceEEEEEEeCC-------CcccceECCCCCEEEEeccCcccCcceeeecccc
Confidence 1 23447777877 444433333322 2357789999995555542 12334566665543
No 461
>PLN02193 nitrile-specifier protein
Probab=92.20 E-value=22 Score=39.36 Aligned_cols=208 Identities=9% Similarity=-0.059 Sum_probs=96.0
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCc-eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeC---C-
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPL-VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSG---S- 240 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~-~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~---~- 240 (729)
.+|++|+.+ .+-.++......+. .+....... -+..|+.+-..... .....+|++|+.+.+-+++... +
T Consensus 194 ~v~~yD~~~--~~W~~~~~~g~~P~~~~~~~~~v~-~~~~lYvfGG~~~~---~~~ndv~~yD~~t~~W~~l~~~~~~P~ 267 (470)
T PLN02193 194 HLYVFDLET--RTWSISPATGDVPHLSCLGVRMVS-IGSTLYVFGGRDAS---RQYNGFYSFDTTTNEWKLLTPVEEGPT 267 (470)
T ss_pred cEEEEECCC--CEEEeCCCCCCCCCCcccceEEEE-ECCEEEEECCCCCC---CCCccEEEEECCCCEEEEcCcCCCCCC
Confidence 599999986 55444432210011 111111112 23444333221111 1236799999998877776542 1
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecC-C
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRK-N 319 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~-~ 319 (729)
.....-.. ..+.+|++..-..... ...+++++|+. +.+............. .. ......-++++++..-.. .
T Consensus 268 ~R~~h~~~-~~~~~iYv~GG~~~~~--~~~~~~~yd~~-t~~W~~~~~~~~~~~~--R~-~~~~~~~~gkiyviGG~~g~ 340 (470)
T PLN02193 268 PRSFHSMA-ADEENVYVFGGVSATA--RLKTLDSYNIV-DKKWFHCSTPGDSFSI--RG-GAGLEVVQGKVWVVYGFNGC 340 (470)
T ss_pred CccceEEE-EECCEEEEECCCCCCC--CcceEEEEECC-CCEEEeCCCCCCCCCC--CC-CcEEEEECCcEEEEECCCCC
Confidence 11111112 2345566554221111 23568899987 5544221110000000 11 111223466755543321 1
Q ss_pred CceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEEC----------C--eEEEEEEECCC
Q 004816 320 GFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQN----------G--RSYLGILDDFG 387 (729)
Q Consensus 320 g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~----------g--~~~ly~~d~~~ 387 (729)
....++++|+++.+++.+.... ....+... ...... ++ .||+..-.. + ...+|.+|+.+
T Consensus 341 ~~~dv~~yD~~t~~W~~~~~~g-~~P~~R~~---~~~~~~----~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t 411 (470)
T PLN02193 341 EVDDVHYYDPVQDKWTQVETFG-VRPSERSV---FASAAV----GK-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTET 411 (470)
T ss_pred ccCceEEEECCCCEEEEeccCC-CCCCCcce---eEEEEE----CC-EEEEECCccCCccccccCccceeccEEEEEcCc
Confidence 2367999999999998875321 00011111 111222 33 344333211 1 13589999999
Q ss_pred CceEeecc
Q 004816 388 HSLSLLDI 395 (729)
Q Consensus 388 g~~~~lt~ 395 (729)
.+++.+..
T Consensus 412 ~~W~~~~~ 419 (470)
T PLN02193 412 LQWERLDK 419 (470)
T ss_pred CEEEEccc
Confidence 99988863
No 462
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=1.2 Score=43.72 Aligned_cols=99 Identities=17% Similarity=0.027 Sum_probs=59.2
Q ss_pred CCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCC
Q 004816 492 PPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADE 570 (729)
Q Consensus 492 ~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 570 (729)
.| +|++||-........+....+++.+. |..|.+++.-- | -..+|.... .+.+..+-+.+..... -+
T Consensus 24 ~P-~ii~HGigd~c~~~~~~~~~q~l~~~~g~~v~~leig~-g-~~~s~l~pl--------~~Qv~~~ce~v~~m~~-ls 91 (296)
T KOG2541|consen 24 VP-VIVWHGIGDSCSSLSMANLTQLLEELPGSPVYCLEIGD-G-IKDSSLMPL--------WEQVDVACEKVKQMPE-LS 91 (296)
T ss_pred CC-EEEEeccCcccccchHHHHHHHHHhCCCCeeEEEEecC-C-cchhhhccH--------HHHHHHHHHHHhcchh-cc
Confidence 45 56679976555555566677777775 99999999731 1 113333222 2334444444443322 25
Q ss_pred CcEEEEEcChHHHHHHHHHh--CCCcceEEEEec
Q 004816 571 KRLCITGGSAGGYTTLAALA--FRDTFKAGASLY 602 (729)
Q Consensus 571 ~ri~i~G~S~GG~~a~~~~~--~~~~~~a~v~~~ 602 (729)
+-+.++|.|.||.++-.++. ....++-.|+.+
T Consensus 92 qGynivg~SQGglv~Raliq~cd~ppV~n~ISL~ 125 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQFCDNPPVKNFISLG 125 (296)
T ss_pred CceEEEEEccccHHHHHHHHhCCCCCcceeEecc
Confidence 67899999999999877765 223455555543
No 463
>KOG4328 consensus WD40 protein [Function unknown]
Probab=92.15 E-value=15 Score=38.71 Aligned_cols=158 Identities=9% Similarity=0.046 Sum_probs=85.5
Q ss_pred eeeecceecCCCC-EEEEEEeccCCCCCCcceEEEEEEcCCCc-----eEEeeeCCCeeeeeeeCCCC-CeEEEEEecCC
Q 004816 191 VSYADGIFDPRFN-RYVTVREDRRQDALNSTTEIVAIALNGQN-----IQVLVSGSDFYAFPRMDPRG-ERMAWIEWHHP 263 (729)
Q Consensus 191 ~~~~~~~~SPdG~-~l~~~~~~~~~~~~~~~~~l~~~dl~~g~-----~~~lt~~~~~~~~~~~SPDG-~~la~~~~~~~ 263 (729)
.|+....|.|--. .++.+-+.. ++|-++++.+.+ ....+......++..|+|-. .+|+-.+.
T Consensus 187 ~Rit~l~fHPt~~~~lva~GdK~--------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy--- 255 (498)
T KOG4328|consen 187 RRITSLAFHPTENRKLVAVGDKG--------GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY--- 255 (498)
T ss_pred cceEEEEecccCcceEEEEccCC--------CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeecc---
Confidence 3567778999655 777775544 567777885322 22234445567788899944 44444442
Q ss_pred CCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCc
Q 004816 264 NMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDA 342 (729)
Q Consensus 264 ~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~ 342 (729)
...|...|++ ++....+..+.... ..+....++.+.+ ++|..+. |..+++-....+.+...+.-...
T Consensus 256 -----DGtiR~~D~~-~~i~e~v~s~~~d~----~~fs~~d~~~e~~~vl~~~~~--G~f~~iD~R~~~s~~~~~~lh~k 323 (498)
T KOG4328|consen 256 -----DGTIRLQDFE-GNISEEVLSLDTDN----IWFSSLDFSAESRSVLFGDNV--GNFNVIDLRTDGSEYENLRLHKK 323 (498)
T ss_pred -----Cceeeeeeec-chhhHHHhhcCccc----eeeeeccccCCCccEEEeecc--cceEEEEeecCCccchhhhhhhc
Confidence 2348889998 45432222222122 5566778888877 7777766 44455433333322233322221
Q ss_pred cccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEE
Q 004816 343 EFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGIL 383 (729)
Q Consensus 343 ~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~ 383 (729)
.+..-...| -..+++.++.-++...||-+
T Consensus 324 KI~sv~~NP------------~~p~~laT~s~D~T~kIWD~ 352 (498)
T KOG4328|consen 324 KITSVALNP------------VCPWFLATASLDQTAKIWDL 352 (498)
T ss_pred ccceeecCC------------CCchheeecccCcceeeeeh
Confidence 222222221 23356666666777777744
No 464
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=92.08 E-value=18 Score=38.18 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=51.7
Q ss_pred eEEEEEEcCCCeEEEeeccC-------ccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeec
Q 004816 322 WNLHKWIESNNEVLAIYSLD-------AEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLD 394 (729)
Q Consensus 322 ~~l~~~d~~~g~~~~l~~~~-------~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt 394 (729)
..|++++....++.-+.... .....+.|.. .+..+ .+.-++.+...+|..+||.+...-.+++.|.
T Consensus 348 G~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit---sla~i----~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~ 420 (479)
T KOG0299|consen 348 GSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT---SLAVI----PGSDLLASGSWSGCVRLWKIEDGLRAINLLY 420 (479)
T ss_pred ceEEEeeecccCceeEeeccccccCCcccccccccee---eeEec----ccCceEEecCCCCceEEEEecCCccccceee
Confidence 35666666555443322111 1223344764 45555 4555777888899999999876555565554
Q ss_pred cC--CcceEEe--eeeCCEEEEEEeCCCCCceEEE
Q 004816 395 IP--FTDIDNI--TLGNDCLFVEGASGVEPSSVAK 425 (729)
Q Consensus 395 ~~--~~~v~~~--~~~~~~~~~~~~~~~~~~~ly~ 425 (729)
.- ..-|..+ +.+++.+++-.+.....++++.
T Consensus 421 ~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~ 455 (479)
T KOG0299|consen 421 SLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWC 455 (479)
T ss_pred ecccccEEEEEEEccCCCEEEEecccccccceeeE
Confidence 32 2234444 4445545554444444444433
No 465
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.78 E-value=23 Score=39.74 Aligned_cols=206 Identities=13% Similarity=0.071 Sum_probs=0.0
Q ss_pred CEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecC-------------CCCEEEEEEeccCCCCCCcce
Q 004816 155 DTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDP-------------RFNRYVTVREDRRQDALNSTT 221 (729)
Q Consensus 155 ~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SP-------------dG~~l~~~~~~~~~~~~~~~~ 221 (729)
+..+|.....+.|+.+|.++| ...-+.... ......+ .+.+|++...+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TG-k~lW~~~~~--------~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg--------- 130 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTG-KELWKYDPK--------LPDDVIPVMCCDVVNRGVALYDGKVFFGTLDA--------- 130 (527)
T ss_pred CCEEEEECCCCcEEEEECCCC-ceeeEecCC--------CCcccccccccccccccceEECCEEEEEcCCC---------
Q ss_pred EEEEEEcCCCceEEeee------CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCC
Q 004816 222 EIVAIALNGQNIQVLVS------GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPT 295 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~------~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~ 295 (729)
.|+.+|.++|++.=-.. +......|... +|+-++-.+..+.+ ....|+.+|++ +|+..+.......+..
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~---~~G~v~AlD~~-TG~~lW~~~~~p~~~~ 205 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFG---VRGYVTAYDAK-TGKLVWRRYTVPGDMG 205 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccccC---CCcEEEEEECC-CCceeEeccCcCCCcc
Q ss_pred -----------------ccccccCc---------eeCCCCc-EEEEE--------ecCCCce----EEEEEEcCCCeEE-
Q 004816 296 -----------------IVESPTEP---------KWSSKGE-LFFVT--------DRKNGFW----NLHKWIESNNEVL- 335 (729)
Q Consensus 296 -----------------~~~~~~~~---------~wspDG~-l~~~~--------~~~~g~~----~l~~~d~~~g~~~- 335 (729)
|....... .+.++-. +|+-. ....|.. .|..+|++||+.+
T Consensus 206 ~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W 285 (527)
T TIGR03075 206 YLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKW 285 (527)
T ss_pred cccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEE
Q ss_pred --EeeccCccccCCcccccCcceeeeeecCCCC--EEEEEEEECCeEEEEEEECCCCce
Q 004816 336 --AIYSLDAEFSRPLWVFGINSYEIIQSHGEKN--LIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 336 --~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~--~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
+.++.+....+....+..-++.. +++ .++....++| .+|++|..+|+.
T Consensus 286 ~~Q~~~~D~wD~d~~~~p~l~d~~~-----~G~~~~~v~~~~K~G--~~~vlDr~tG~~ 337 (527)
T TIGR03075 286 HYQTTPHDEWDYDGVNEMILFDLKK-----DGKPRKLLAHADRNG--FFYVLDRTNGKL 337 (527)
T ss_pred eeeCCCCCCccccCCCCcEEEEecc-----CCcEEEEEEEeCCCc--eEEEEECCCCce
No 466
>PF03283 PAE: Pectinacetylesterase
Probab=91.52 E-value=0.19 Score=52.95 Aligned_cols=38 Identities=24% Similarity=0.291 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHH
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAAL 589 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~ 589 (729)
..-+.+++++|..++.-+.++|.|.|.|+||+-++.-+
T Consensus 137 ~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 137 YRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 45588999999999777889999999999999987655
No 467
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=91.40 E-value=0.44 Score=51.08 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=63.9
Q ss_pred EEEEEEcCCCCCCCCCCCCCCCEEEEEcCCCCCCccccch-------------hh----hHHHhhCCcEEEEecCCCCCC
Q 004816 472 AYAYYYPPSNPIYQASPEEKPPLLVKSHGGPTSEARGILN-------------LS----IQYWTSRGWAFVDVNYGGSTG 534 (729)
Q Consensus 472 l~~~l~~P~~~~~~~~~~~~~P~vv~~hGg~~~~~~~~~~-------------~~----~~~la~~G~~v~~~d~rGs~g 534 (729)
...|.+.+.+ ...++|+++++-|||++......- +. -..|.+. -.++.+|.+-.+|
T Consensus 87 ~ffy~fe~~n------dp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~-adLvFiDqPvGTG 159 (498)
T COG2939 87 FFFYTFESPN------DPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDF-ADLVFIDQPVGTG 159 (498)
T ss_pred EEEEEecCCC------CCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccC-CceEEEecCcccC
Confidence 4556666544 246789999999999865443211 00 0112222 3578888776677
Q ss_pred CchhHHHhhccCCCcccHHHHHHHHHHHHh----CCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 535 YGREFRERLLGRWGIVDVNDCCSCATFLVG----SGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 535 ~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
|.++.......+.. ..-+|+..+.+.+.+ .... ..+..|+|.||||+-+-.+|.
T Consensus 160 fS~a~~~e~~~d~~-~~~~D~~~~~~~f~~~fp~~~r~-~~~~~L~GESYgg~yip~~A~ 217 (498)
T COG2939 160 FSRALGDEKKKDFE-GAGKDVYSFLRLFFDKFPHYARL-LSPKFLAGESYGGHYIPVFAH 217 (498)
T ss_pred cccccccccccchh-ccchhHHHHHHHHHHHHHHHhhh-cCceeEeeccccchhhHHHHH
Confidence 77652222222211 124566665554443 2221 258999999999988877764
No 468
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=91.34 E-value=3.5 Score=44.78 Aligned_cols=148 Identities=11% Similarity=0.085 Sum_probs=71.5
Q ss_pred CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCC
Q 004816 241 DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNG 320 (729)
Q Consensus 241 ~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g 320 (729)
..+....|.-+|.+|+.+..+. .+..+++..+. .... ...+.... +.+..+.|.|---.+|++..
T Consensus 522 k~i~~vtWHrkGDYlatV~~~~-----~~~~VliHQLS-K~~s--Q~PF~ksk----G~vq~v~FHPs~p~lfVaTq--- 586 (733)
T KOG0650|consen 522 KSIRQVTWHRKGDYLATVMPDS-----GNKSVLIHQLS-KRKS--QSPFRKSK----GLVQRVKFHPSKPYLFVATQ--- 586 (733)
T ss_pred CccceeeeecCCceEEEeccCC-----CcceEEEEecc-cccc--cCchhhcC----CceeEEEecCCCceEEEEec---
Confidence 3456778999999998776433 24568888887 2221 12222222 44556778886554444332
Q ss_pred ceEEEEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEeeccCCcc
Q 004816 321 FWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSLLDIPFTD 399 (729)
Q Consensus 321 ~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~lt~~~~~ 399 (729)
..+-++|+..++ ++.|.+. ..|.. .+...+ .|..|++.+. ++..-.|-+|+.++-.+.|......
T Consensus 587 -~~vRiYdL~kqelvKkL~tg------~kwiS---~msihp---~GDnli~gs~-d~k~~WfDldlsskPyk~lr~H~~a 652 (733)
T KOG0650|consen 587 -RSVRIYDLSKQELVKKLLTG------SKWIS---SMSIHP---NGDNLILGSY-DKKMCWFDLDLSSKPYKTLRLHEKA 652 (733)
T ss_pred -cceEEEehhHHHHHHHHhcC------Ceeee---eeeecC---CCCeEEEecC-CCeeEEEEcccCcchhHHhhhhhhh
Confidence 235556765432 2223222 23321 222221 4555655443 3333333444444455555444444
Q ss_pred eEEeeeeCCEEEEEEeCC
Q 004816 400 IDNITLGNDCLFVEGASG 417 (729)
Q Consensus 400 v~~~~~~~~~~~~~~~~~ 417 (729)
+.++......=++.++++
T Consensus 653 vr~Va~H~ryPLfas~sd 670 (733)
T KOG0650|consen 653 VRSVAFHKRYPLFASGSD 670 (733)
T ss_pred hhhhhhccccceeeeecC
Confidence 444433333333333333
No 469
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=91.22 E-value=22 Score=37.51 Aligned_cols=94 Identities=10% Similarity=0.045 Sum_probs=48.2
Q ss_pred EEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceee---ecceecCCCCEE--EEEEeccCCCCCCcceEEEEEEcCCC
Q 004816 157 VIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSY---ADGIFDPRFNRY--VTVREDRRQDALNSTTEIVAIALNGQ 231 (729)
Q Consensus 157 i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~---~~~~~SPdG~~l--~~~~~~~~~~~~~~~~~l~~~dl~~g 231 (729)
+++.....+.|+++|+++ +..+.+..+. ...+ .++.+ +|+.+ +.+.++.... ..-.||.+|.+++
T Consensus 70 lIigTdK~~GL~VYdL~G--k~lq~~~~Gr---~NNVDvrygf~l--~g~~vDlavas~R~~g~---n~l~~f~id~~~g 139 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDG--KELQSLPVGR---PNNVDVRYGFPL--NGKTVDLAVASDRSDGR---NSLRLFRIDPDTG 139 (381)
T ss_dssp EEEEEETTTEEEEEETTS---EEEEE-SS----EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT----EEEEEEEETTTT
T ss_pred eEEEEeCCCCEEEEcCCC--cEEEeecCCC---cceeeeecceec--CCceEEEEEEecCcCCC---CeEEEEEecCCCC
Confidence 445555567899999997 7777775441 1111 22333 67764 4444432111 0246899998878
Q ss_pred ceEEeeeCC-------Ceeeeeee--CC-CCCeEEEEEe
Q 004816 232 NIQVLVSGS-------DFYAFPRM--DP-RGERMAWIEW 260 (729)
Q Consensus 232 ~~~~lt~~~-------~~~~~~~~--SP-DG~~la~~~~ 260 (729)
..+.++... ....+.|. +| +|+.-+|+..
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~ 178 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNG 178 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCcEEEEEec
Confidence 777665321 11234454 54 6777777764
No 470
>PLN02633 palmitoyl protein thioesterase family protein
Probab=91.01 E-value=2 Score=43.54 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCCCCCccccchhhhHHHhhC-CcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCC
Q 004816 490 EKPPLLVKSHGGPTSEARGILNLSIQYWTSR-GWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKA 568 (729)
Q Consensus 490 ~~~P~vv~~hGg~~~~~~~~~~~~~~~la~~-G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 568 (729)
...| ||+.||-+............+.+.+. |.-+..+....+ .-.+| -...-+.+..+.+.|.+-+..
T Consensus 24 ~~~P-~ViwHG~GD~c~~~g~~~~~~l~~~~~g~~~~~i~ig~~--~~~s~--------~~~~~~Qve~vce~l~~~~~l 92 (314)
T PLN02633 24 VSVP-FIMLHGIGTQCSDATNANFTQLLTNLSGSPGFCLEIGNG--VGDSW--------LMPLTQQAEIACEKVKQMKEL 92 (314)
T ss_pred CCCC-eEEecCCCcccCCchHHHHHHHHHhCCCCceEEEEECCC--ccccc--------eeCHHHHHHHHHHHHhhchhh
Confidence 3456 55569976655555555566666553 777777765321 11111 112234445555555553333
Q ss_pred CCCcEEEEEcChHHHHHHHHHh-CCC--cceEEEEecc
Q 004816 569 DEKRLCITGGSAGGYTTLAALA-FRD--TFKAGASLYG 603 (729)
Q Consensus 569 d~~ri~i~G~S~GG~~a~~~~~-~~~--~~~a~v~~~~ 603 (729)
.+-+.++|+|.||.++=.++. .++ .++-.|++.+
T Consensus 93 -~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlgg 129 (314)
T PLN02633 93 -SQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAG 129 (314)
T ss_pred -hCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecC
Confidence 246999999999999877776 544 4777776653
No 471
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.94 E-value=11 Score=37.38 Aligned_cols=152 Identities=11% Similarity=0.012 Sum_probs=79.5
Q ss_pred ECCEEEEEECCCC--cEEEEeCCCCCCCCeecCCCCCCCceeee-cceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 153 FGDTVIFSNYKDQ--RLYKHSIDSKDSSPLPITPDYGEPLVSYA-DGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 153 ~~~~i~~~~~~~~--~l~~~d~~~~~~~~~~lt~~~~~~~~~~~-~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
.++.++-+....| .|..+|+++ ++..+-..-+ ..-++ ..+. -|.+|+-..... ...+++|.+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~t--g~~~~~~~l~---~~~FgEGit~--~~d~l~qLTWk~--------~~~f~yd~~ 118 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLET--GKVLQSVPLP---PRYFGEGITI--LGDKLYQLTWKE--------GTGFVYDPN 118 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTT--SSEEEEEE-T---TT--EEEEEE--ETTEEEEEESSS--------SEEEEEETT
T ss_pred CCCEEEEeCCCCCcEEEEEEECCC--CcEEEEEECC---ccccceeEEE--ECCEEEEEEecC--------CeEEEEccc
Confidence 4556666666555 899999998 6654333221 11122 2222 255666665543 578999998
Q ss_pred CCce-EEeee-CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee-eeEEecCCCCCccccccCceeC
Q 004816 230 GQNI-QVLVS-GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY-KRVCVAGFDPTIVESPTEPKWS 306 (729)
Q Consensus 230 ~g~~-~~lt~-~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ws 306 (729)
+-+. .++.- +.++ + ...||+.|+... ....|+..|.+ +-+.. .+.+..+..+ ...+....|-
T Consensus 119 tl~~~~~~~y~~EGW--G--Lt~dg~~Li~SD--------GS~~L~~~dP~-~f~~~~~i~V~~~g~p--v~~LNELE~i 183 (264)
T PF05096_consen 119 TLKKIGTFPYPGEGW--G--LTSDGKRLIMSD--------GSSRLYFLDPE-TFKEVRTIQVTDNGRP--VSNLNELEYI 183 (264)
T ss_dssp TTEEEEEEE-SSS----E--EEECSSCEEEE---------SSSEEEEE-TT-T-SEEEEEE-EETTEE-----EEEEEEE
T ss_pred cceEEEEEecCCcce--E--EEcCCCEEEEEC--------CccceEEECCc-ccceEEEEEEEECCEE--CCCcEeEEEE
Confidence 7543 23321 2221 2 237888876544 23568988876 44332 2222222110 0234456674
Q ss_pred CCCcEEEEEecCCCceEEEEEEcCCCeEEEee
Q 004816 307 SKGELFFVTDRKNGFWNLHKWIESNNEVLAIY 338 (729)
Q Consensus 307 pDG~l~~~~~~~~g~~~l~~~d~~~g~~~~l~ 338 (729)
||.|+...-. ...|.++|+++|++....
T Consensus 184 -~G~IyANVW~---td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 184 -NGKIYANVWQ---TDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp -TTEEEEEETT---SSEEEEEETTT-BEEEEE
T ss_pred -cCEEEEEeCC---CCeEEEEeCCCCeEEEEE
Confidence 6765543322 467999999999988765
No 472
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=90.73 E-value=2 Score=43.00 Aligned_cols=99 Identities=11% Similarity=0.185 Sum_probs=63.1
Q ss_pred eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC-eeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCC
Q 004816 243 YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD-VYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNG 320 (729)
Q Consensus 243 ~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~-~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g 320 (729)
..--+|++|+..||... ++.+|.++... +.. ......+...+ ..+..+.|+|.+. |+-.+++ ++
T Consensus 13 itchAwn~drt~iAv~~--------~~~evhiy~~~-~~~~w~~~htls~Hd----~~vtgvdWap~snrIvtcs~d-rn 78 (361)
T KOG1523|consen 13 ITCHAWNSDRTQIAVSP--------NNHEVHIYSML-GADLWEPAHTLSEHD----KIVTGVDWAPKSNRIVTCSHD-RN 78 (361)
T ss_pred eeeeeecCCCceEEecc--------CCceEEEEEec-CCCCceeceehhhhC----cceeEEeecCCCCceeEccCC-CC
Confidence 34458999999999766 34568888776 444 44556667776 7778899999986 7766665 32
Q ss_pred ceEEEEEEc-CCCeEE---EeeccCccccCCcccccCcceee
Q 004816 321 FWNLHKWIE-SNNEVL---AIYSLDAEFSRPLWVFGINSYEI 358 (729)
Q Consensus 321 ~~~l~~~d~-~~g~~~---~l~~~~~~~~~~~w~~~~~~~~~ 358 (729)
-|++.. ++++.+ .|...+.....-.|+|..+-|..
T Consensus 79 ---ayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAV 117 (361)
T KOG1523|consen 79 ---AYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAV 117 (361)
T ss_pred ---ccccccCCCCeeccceeEEEeccceeeEeecCcCceEEe
Confidence 233333 566544 23344555556788874444433
No 473
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=90.73 E-value=27 Score=38.09 Aligned_cols=103 Identities=12% Similarity=0.104 Sum_probs=49.7
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCC----CCceeeecceecCCC-----CEEEEEEeccCCCCC--CcceEEE
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYG----EPLVSYADGIFDPRF-----NRYVTVREDRRQDAL--NSTTEIV 224 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~----~~~~~~~~~~~SPdG-----~~l~~~~~~~~~~~~--~~~~~l~ 224 (729)
.++++....++|++++..+ +..+.+...++ .......+++++||- +..+|+......... .....|.
T Consensus 42 ~llVtER~~G~I~~v~~~~--~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~~~~~~I~ 119 (454)
T TIGR03606 42 QLWVTERATGKILRVNPET--GEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKELPNHTKIV 119 (454)
T ss_pred eEEEEEecCCEEEEEeCCC--CceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCccCCcEEE
Confidence 4554443358899998765 43333221110 002334677888874 223444322111000 0135787
Q ss_pred EEEcCCC-----ceEEeeeCC-----CeeeeeeeCCCCCeEEEEEec
Q 004816 225 AIALNGQ-----NIQVLVSGS-----DFYAFPRMDPRGERMAWIEWH 261 (729)
Q Consensus 225 ~~dl~~g-----~~~~lt~~~-----~~~~~~~~SPDG~~la~~~~~ 261 (729)
++.++.. ..+.|..+. ..-....|.|||+ |++..-+
T Consensus 120 R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD 165 (454)
T TIGR03606 120 RYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGE 165 (454)
T ss_pred EEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECC
Confidence 7776521 223443221 1223568999997 6655433
No 474
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=90.63 E-value=22 Score=36.40 Aligned_cols=234 Identities=9% Similarity=0.022 Sum_probs=0.0
Q ss_pred CceEEEECC-EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEE
Q 004816 147 GGAFRIFGD-TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVA 225 (729)
Q Consensus 147 ~~~~~~~~~-~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~ 225 (729)
..+.++++. .-+.+...++.+-+||+.+| .-...||.. -..+.+.++|+---+++...++. ++-.
T Consensus 154 Vr~vavdP~n~wf~tgs~DrtikIwDlatg-~LkltltGh----i~~vr~vavS~rHpYlFs~gedk---------~VKC 219 (460)
T KOG0285|consen 154 VRSVAVDPGNEWFATGSADRTIKIWDLATG-QLKLTLTGH----IETVRGVAVSKRHPYLFSAGEDK---------QVKC 219 (460)
T ss_pred EEEEeeCCCceeEEecCCCceeEEEEcccC-eEEEeecch----hheeeeeeecccCceEEEecCCC---------eeEE
Q ss_pred EEcCCCceEEeeeCC-CeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCce
Q 004816 226 IALNGQNIQVLVSGS-DFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPK 304 (729)
Q Consensus 226 ~dl~~g~~~~lt~~~-~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (729)
+|++..++.+-..|. .........|--+.|+-.+ ....+.++|+. +... +..+.+.. ..+..+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g--------rDst~RvWDiR-tr~~--V~~l~GH~----~~V~~V~ 284 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG--------RDSTIRVWDIR-TRAS--VHVLSGHT----NPVASVM 284 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecC--------CcceEEEeeec-ccce--EEEecCCC----CcceeEE
Q ss_pred eCC-CCcEEEEEecCCCceEEEEEEcCCCe-EEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEE
Q 004816 305 WSS-KGELFFVTDRKNGFWNLHKWIESNNE-VLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGI 382 (729)
Q Consensus 305 wsp-DG~l~~~~~~~~g~~~l~~~d~~~g~-~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~ 382 (729)
..| |++++-.+.+ ..+..+|+..|+ ...++.....+....-.| +...|.+.......-|.
T Consensus 285 ~~~~dpqvit~S~D----~tvrlWDl~agkt~~tlt~hkksvral~lhP--------------~e~~fASas~dnik~w~ 346 (460)
T KOG0285|consen 285 CQPTDPQVITGSHD----STVRLWDLRAGKTMITLTHHKKSVRALCLHP--------------KENLFASASPDNIKQWK 346 (460)
T ss_pred eecCCCceEEecCC----ceEEEeeeccCceeEeeecccceeeEEecCC--------------chhhhhccCCccceecc
Q ss_pred EECCCCceEeeccCCcceEEeeeeCCEEEEEEeCCCCCceEEEEEcCCC
Q 004816 383 LDDFGHSLSLLDIPFTDIDNITLGNDCLFVEGASGVEPSSVAKVTLDDH 431 (729)
Q Consensus 383 ~d~~~g~~~~lt~~~~~v~~~~~~~~~~~~~~~~~~~~~~ly~~d~~~~ 431 (729)
+ +++....-+......+..+....+.+++..+... .++..|.++|
T Consensus 347 ~-p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng---~~~fwdwksg 391 (460)
T KOG0285|consen 347 L-PEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNG---SIMFWDWKSG 391 (460)
T ss_pred C-CccchhhccccccceeeeeeeccCceEEEcCCce---EEEEEecCcC
No 475
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=90.53 E-value=0.46 Score=42.60 Aligned_cols=52 Identities=21% Similarity=0.075 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh----CC----CcceEEEEecccc
Q 004816 552 VNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA----FR----DTFKAGASLYGVA 605 (729)
Q Consensus 552 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~----~~----~~~~a~v~~~~~~ 605 (729)
.+.+...++.+.++.. ..+|.+.|||+||.+|..++. +. ..+++.....|..
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 3455566666655543 479999999999999977764 22 4456555555543
No 476
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=90.44 E-value=7.5 Score=38.82 Aligned_cols=153 Identities=11% Similarity=0.074 Sum_probs=0.0
Q ss_pred CCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCC--------------CCCCCCcEEEEEEecCCCC
Q 004816 217 LNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHP--------------NMPWDKAELWVGYISENGD 282 (729)
Q Consensus 217 ~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~--------------~~~~~~~~l~~~d~~~~g~ 282 (729)
......+|.+.+-+..++ ++.+.++...|+-| .|+|-.|-+. .+.+.-+.|+.+|++ +++
T Consensus 16 ~~d~~~iY~felvG~~P~---SGGDTYNAV~~vDd--~IyFGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e-~~~ 89 (339)
T PF09910_consen 16 RDDSEKIYRFELVGPPPT---SGGDTYNAVEWVDD--FIYFGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTE-NDS 89 (339)
T ss_pred cCCceEEEEeeeccCCCC---CCCccceeeeeecc--eEEEeeeecCCceeeeccCCceEEEEeeccceEEEEEcC-CCe
Q ss_pred ee--eeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeee
Q 004816 283 VY--KRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEII 359 (729)
Q Consensus 283 ~~--~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l 359 (729)
++ +..-..... +|..-++.+-..|=.. |++.+.+..-..-||.+|..+|+.+.|.+.. ..+.-.+.
T Consensus 90 VrLLWkesih~~~-~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~p----------s~KG~~~~ 158 (339)
T PF09910_consen 90 VRLLWKESIHDKT-KWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNP----------SLKGTLVH 158 (339)
T ss_pred EEEEEecccCCcc-ccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCC----------CcCceEee
Q ss_pred eecCCCCEEEEEEEECCeEEEEEEECCCCce
Q 004816 360 QSHGEKNLIACSYRQNGRSYLGILDDFGHSL 390 (729)
Q Consensus 360 ~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~ 390 (729)
|...+-......|...|..+|+.++++
T Consensus 159 ----D~a~F~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 159 ----DYACFGINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred ----eeEEEeccccccCCceEEEEEccCCeE
No 477
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=90.17 E-value=0.54 Score=44.84 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 551 DVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 551 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
.+.|+.+|.++.+++.. +...++|.|||.|+.+..+++.
T Consensus 76 ay~DV~~AF~~yL~~~n-~GRPfILaGHSQGs~~l~~LL~ 114 (207)
T PF11288_consen 76 AYSDVRAAFDYYLANYN-NGRPFILAGHSQGSMHLLRLLK 114 (207)
T ss_pred hHHHHHHHHHHHHHhcC-CCCCEEEEEeChHHHHHHHHHH
Confidence 48999999998877743 3468999999999999999986
No 478
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=89.92 E-value=23 Score=35.49 Aligned_cols=63 Identities=6% Similarity=-0.040 Sum_probs=39.4
Q ss_pred eeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCC--eEEEEEecCC
Q 004816 192 SYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGE--RMAWIEWHHP 263 (729)
Q Consensus 192 ~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~--~la~~~~~~~ 263 (729)
.+.+.+||-||..+ |+..-+ .++-++||.++++.++....+......|=+-.. -|+-.+||..
T Consensus 74 PvL~v~WsddgskV-f~g~~D--------k~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKT 138 (347)
T KOG0647|consen 74 PVLDVCWSDDGSKV-FSGGCD--------KQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKT 138 (347)
T ss_pred CeEEEEEccCCceE-EeeccC--------CceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccc
Confidence 35788999999875 444332 357778999999988876555444455543333 3343444443
No 479
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.55 E-value=17 Score=43.29 Aligned_cols=51 Identities=2% Similarity=-0.115 Sum_probs=34.7
Q ss_pred ECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEe
Q 004816 153 FGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVRE 210 (729)
Q Consensus 153 ~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~ 210 (729)
++..|.+.. ..|+|.+.|+.+ .....+... ...+...+||||++.++.+..
T Consensus 79 d~~~i~v~~-~~G~iilvd~et--~~~eivg~v----d~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 79 DTNSICVIT-ALGDIILVDPET--LELEIVGNV----DNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ccceEEEEe-cCCcEEEEcccc--cceeeeeec----cCceEEEeecCCCcEEEEEeC
Confidence 344554443 466788888887 665655555 344677789999999888765
No 480
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=89.52 E-value=10 Score=40.05 Aligned_cols=117 Identities=9% Similarity=0.009 Sum_probs=64.8
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEee-eCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcE
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLV-SGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAE 271 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt-~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~ 271 (729)
+....-+|+|.+|+.... ..+||++.+.+|+.-.+. ......+-..||-||+.|.-.+ .+ ..
T Consensus 84 v~al~s~n~G~~l~ag~i---------~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-kD-------g~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTI---------SGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-KD-------GA 146 (476)
T ss_pred eeeeecCCCceEEEeecc---------cCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-CC-------cc
Confidence 455667999998776633 257999999999753332 2223345568999999764333 22 22
Q ss_pred EEEEEec------CCCCeeeeEEecCCCCCccccccCceeCCCCc--EEEEEecCCCceEEEEEEcCCCe
Q 004816 272 LWVGYIS------ENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNE 333 (729)
Q Consensus 272 l~~~d~~------~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~ 333 (729)
+.++.+. .++...+...+.++. .++..+...+.|. .+|++.. + ..+-++|+..|.
T Consensus 147 V~vW~l~~lv~a~~~~~~~p~~~f~~Ht----lsITDl~ig~Gg~~~rl~TaS~-D--~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 147 VLVWLLTDLVSADNDHSVKPLHIFSDHT----LSITDLQIGSGGTNARLYTASE-D--RTIKLWDLSLGV 209 (476)
T ss_pred EEEEEEEeecccccCCCccceeeeccCc----ceeEEEEecCCCccceEEEecC-C--ceEEEEEeccce
Confidence 4433332 123333445555554 4555555554432 3333332 1 345556776764
No 481
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=89.16 E-value=0.76 Score=47.64 Aligned_cols=68 Identities=21% Similarity=0.087 Sum_probs=47.2
Q ss_pred hhhHHHhhCCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 512 LSIQYWTSRGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 512 ~~~~~la~~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
.....|.++|+-|+-+|-- +-|+. .+.......|+.+.+++...+. ...++.++|+|+|+-+.-.+..
T Consensus 278 ~v~~~l~~~gvpVvGvdsL------RYfW~---~rtPe~~a~Dl~r~i~~y~~~w--~~~~~~liGySfGADvlP~~~n 345 (456)
T COG3946 278 EVAEALQKQGVPVVGVDSL------RYFWS---ERTPEQIAADLSRLIRFYARRW--GAKRVLLIGYSFGADVLPFAYN 345 (456)
T ss_pred HHHHHHHHCCCceeeeehh------hhhhc---cCCHHHHHHHHHHHHHHHHHhh--CcceEEEEeecccchhhHHHHH
Confidence 4677889999999999932 01111 1112234788999999887763 4689999999999976644444
No 482
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.92 E-value=17 Score=35.29 Aligned_cols=212 Identities=14% Similarity=0.030 Sum_probs=0.0
Q ss_pred CCEEEEEEeccCCCCCCcceEEEEEEcCC--CceEEeeeCCCeeeeeeeCC--CCCeEEEEEecCCCCCCCCcEEEEEEe
Q 004816 202 FNRYVTVREDRRQDALNSTTEIVAIALNG--QNIQVLVSGSDFYAFPRMDP--RGERMAWIEWHHPNMPWDKAELWVGYI 277 (729)
Q Consensus 202 G~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g~~~~lt~~~~~~~~~~~SP--DG~~la~~~~~~~~~~~~~~~l~~~d~ 277 (729)
|++|+..+.+. .-.||-+.-.+ .....|+...+......|.- -|..||-.+ ...++.+..-
T Consensus 23 gkrlATcsSD~-------tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs--------YDgkVIiWke 87 (299)
T KOG1332|consen 23 GKRLATCSSDG-------TVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS--------YDGKVIIWKE 87 (299)
T ss_pred cceeeeecCCc-------cEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee--------cCceEEEEec
Q ss_pred cCCCCeeeeEEecCCCCCccccccCceeCCCCc--EEEEEecCCCceEEEEEEcCCCeEEEee--ccCccccCCcccccC
Q 004816 278 SENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE--LFFVTDRKNGFWNLHKWIESNNEVLAIY--SLDAEFSRPLWVFGI 353 (729)
Q Consensus 278 ~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~--l~~~~~~~~g~~~l~~~d~~~g~~~~l~--~~~~~~~~~~w~~~~ 353 (729)
+ +|...+.......+ .++..++|.|.+- +++.... .|.-.|..++.+++-...-. -....+....|.|..
T Consensus 88 ~-~g~w~k~~e~~~h~----~SVNsV~wapheygl~LacasS-DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~ 161 (299)
T KOG1332|consen 88 E-NGRWTKAYEHAAHS----ASVNSVAWAPHEYGLLLACASS-DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPAS 161 (299)
T ss_pred C-CCchhhhhhhhhhc----ccceeecccccccceEEEEeeC-CCcEEEEEEcCCCCccchhhhhccccccceeeecCcC
Q ss_pred cc-eeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceEe-eccCCcceEEe----eeeCCEEEEEEeCCCCCceEEEEE
Q 004816 354 NS-YEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLSL-LDIPFTDIDNI----TLGNDCLFVEGASGVEPSSVAKVT 427 (729)
Q Consensus 354 ~~-~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~~-lt~~~~~v~~~----~~~~~~~~~~~~~~~~~~~ly~~d 427 (729)
-+ -.+.....+.-+-+++...|....||.++-+.=.... |....+.++++ ...-.+..+.+.+.+..--||..+
T Consensus 162 ~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 162 APGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred CCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Q ss_pred cCCCcce
Q 004816 428 LDDHKLK 434 (729)
Q Consensus 428 ~~~~~~~ 434 (729)
.+..+.+
T Consensus 242 ~e~e~wk 248 (299)
T KOG1332|consen 242 EEYEPWK 248 (299)
T ss_pred CccCccc
No 483
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=88.81 E-value=1.1 Score=36.53 Aligned_cols=52 Identities=12% Similarity=0.052 Sum_probs=35.7
Q ss_pred CCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcC
Q 004816 164 DQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALN 229 (729)
Q Consensus 164 ~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~ 229 (729)
.|+|+.+|+.+ ++.+.|..+ -...+..++|||+++|+++... ...|.++-++
T Consensus 36 ~GRll~ydp~t--~~~~vl~~~----L~fpNGVals~d~~~vlv~Et~--------~~Ri~rywl~ 87 (89)
T PF03088_consen 36 TGRLLRYDPST--KETTVLLDG----LYFPNGVALSPDESFVLVAETG--------RYRILRYWLK 87 (89)
T ss_dssp -EEEEEEETTT--TEEEEEEEE----ESSEEEEEE-TTSSEEEEEEGG--------GTEEEEEESS
T ss_pred CcCEEEEECCC--CeEEEehhC----CCccCeEEEcCCCCEEEEEecc--------CceEEEEEEe
Confidence 36899999998 777777654 1223778899999997766443 2567766665
No 484
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=88.73 E-value=0.95 Score=46.13 Aligned_cols=122 Identities=18% Similarity=0.194 Sum_probs=78.2
Q ss_pred CCCCcEEEEEcChHHHHHHHHHhCCCcceEEEEecc-ccChhHHhh----h----cch-hhhhh---hhhhcCCh---hh
Q 004816 568 ADEKRLCITGGSAGGYTTLAALAFRDTFKAGASLYG-VADLSMLRA----E----THK-FESRY---IDNLVGSE---KD 631 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~~~~~~~a~v~~~~-~~d~~~~~~----~----~~~-~~~~~---~~~~~~~~---~~ 631 (729)
+..++..+.|.|--|+.+...+...+++.++|...- +.+...... . ... +...| +...+..+ ..
T Consensus 231 ~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~v~D~Lni~a~L~hiyrsYGgnwpi~l~pyyaegi~erl~tp~fkqL 310 (507)
T COG4287 231 VEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPFVYDNLNIEAQLLHIYRSYGGNWPIKLAPYYAEGIDERLETPLFKQL 310 (507)
T ss_pred eeeeeEEEeccccchHHHHHHHhcCcchhhhhhhHHhhcccHHHHHHHHHhhCCCCCcccchhHhhhHHHhhcCHHHHHH
Confidence 456789999999999999888875556666654321 223222111 1 000 00111 11111111 23
Q ss_pred hhhcCccccc-----CCCCCCEEEEEeCCCCCCChHHHHHHHHHHHhCCCCEEEEEECCCCcccCC
Q 004816 632 YYEKSPINFV-----DKFSCPIILFQGLEDKVVPPDQARKIYKALKENGLPVALVEYEGEQHGFRK 692 (729)
Q Consensus 632 ~~~~sp~~~~-----~~i~~PvL~i~G~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~~gH~~~~ 692 (729)
..-.+|+.+. .++..|-.++.+..|...++..+.-++..|.. ..-+.+.|+..|...+
T Consensus 311 ~~IiDPlay~~try~~RLalpKyivnaSgDdff~pDsa~lYyd~LPG---~kaLrmvPN~~H~~~n 373 (507)
T COG4287 311 LEIIDPLAYRNTRYQLRLALPKYIVNASGDDFFVPDSANLYYDDLPG---EKALRMVPNDPHNLIN 373 (507)
T ss_pred HHhhcHHHHhhhhhhhhccccceeecccCCcccCCCccceeeccCCC---ceeeeeCCCCcchhhH
Confidence 3445676655 67788999999999999999999999999875 4478899999997543
No 485
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=88.65 E-value=2.3 Score=42.65 Aligned_cols=96 Identities=13% Similarity=0.048 Sum_probs=66.7
Q ss_pred CCEEEEEECCCCcEEEEeCCCCCCC-CeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCc
Q 004816 154 GDTVIFSNYKDQRLYKHSIDSKDSS-PLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQN 232 (729)
Q Consensus 154 ~~~i~~~~~~~~~l~~~d~~~~~~~-~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~ 232 (729)
++.++...+..|.|+++|+.+ ++ ...+-.. +..+++.++.|+.-+++.....+ ..|-++++.+..
T Consensus 104 ~~p~la~~G~~GvIrVid~~~--~~~~~~~~gh----G~sINeik~~p~~~qlvls~SkD--------~svRlwnI~~~~ 169 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVS--GQCSKNYRGH----GGSINEIKFHPDRPQLVLSASKD--------HSVRLWNIQTDV 169 (385)
T ss_pred CCeeEEeecceeEEEEEecch--hhhccceecc----CccchhhhcCCCCCcEEEEecCC--------ceEEEEeccCCe
Confidence 445666666678999999976 33 2233333 56678999999987776665543 468888998877
Q ss_pred eEEeeeCC----CeeeeeeeCCCCCeEEEEEecCC
Q 004816 233 IQVLVSGS----DFYAFPRMDPRGERMAWIEWHHP 263 (729)
Q Consensus 233 ~~~lt~~~----~~~~~~~~SPDG~~la~~~~~~~ 263 (729)
...+..|. +..-+..||+||.+|+-...|+.
T Consensus 170 Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhs 204 (385)
T KOG1034|consen 170 CVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHS 204 (385)
T ss_pred EEEEecccccccCcEEEEEEcCCCCeeeccCCcce
Confidence 66666543 34557899999999987776653
No 486
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.63 E-value=19 Score=36.83 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=69.1
Q ss_pred EEEEEEC-CCCcEEEEeCCCCCCCCeecCCCC---CCCce-------e------eeccee---cCCCCEEEEEEeccCCC
Q 004816 156 TVIFSNY-KDQRLYKHSIDSKDSSPLPITPDY---GEPLV-------S------YADGIF---DPRFNRYVTVREDRRQD 215 (729)
Q Consensus 156 ~i~~~~~-~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~-------~------~~~~~~---SPdG~~l~~~~~~~~~~ 215 (729)
..+|..+ ....|.++|+.+ ++.+++.... .+... . ....+. +|||++|+|..-..
T Consensus 78 ~~aYItD~~~~glIV~dl~~--~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss--- 152 (287)
T PF03022_consen 78 GFAYITDSGGPGLIVYDLAT--GKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS--- 152 (287)
T ss_dssp EEEEEEETTTCEEEEEETTT--TEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT----
T ss_pred eEEEEeCCCcCcEEEEEccC--CcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC---
Confidence 4455544 445899999988 6666665431 00000 0 111233 44887777764322
Q ss_pred CCCcceEEEEEEcCC---C----------ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCC
Q 004816 216 ALNSTTEIVAIALNG---Q----------NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGD 282 (729)
Q Consensus 216 ~~~~~~~l~~~dl~~---g----------~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~ 282 (729)
..+|.++.+- . +.+.+-.-.....+...+++|. |+|.... ...|+.++.. +.
T Consensus 153 -----~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~-ly~~~~~-------~~aI~~w~~~--~~ 217 (287)
T PF03022_consen 153 -----RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGN-LYFTDVE-------QNAIGCWDPD--GP 217 (287)
T ss_dssp -----SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTE-EEEEECC-------CTEEEEEETT--TS
T ss_pred -----CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCc-EEEecCC-------CCeEEEEeCC--CC
Confidence 4578776431 1 1233322112345678888776 7777643 3459999876 31
Q ss_pred e--eeeEEecCCCCCccccccCceeCC--CCcEEEEEec
Q 004816 283 V--YKRVCVAGFDPTIVESPTEPKWSS--KGELFFVTDR 317 (729)
Q Consensus 283 ~--~~~~~~~~~~~~~~~~~~~~~wsp--DG~l~~~~~~ 317 (729)
. .+..++...+. .......+.+.+ ||.|++.+++
T Consensus 218 ~~~~~~~~l~~d~~-~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 218 YTPENFEILAQDPR-TLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp B-GCCEEEEEE-CC--GSSEEEEEE-T--TS-EEEEE-S
T ss_pred cCccchheeEEcCc-eeeccceeeeccccCceEEEEECc
Confidence 1 12333333221 013445666777 6667777655
No 487
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=88.59 E-value=1.1 Score=41.01 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEcChHHHHHHHHHh
Q 004816 553 NDCCSCATFLVGSGKADEKRLCITGGSAGGYTTLAALA 590 (729)
Q Consensus 553 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~~a~~~~~ 590 (729)
..+...++....+ ....+|.++|||+||.+|..++.
T Consensus 12 ~~i~~~~~~~~~~--~p~~~i~v~GHSlGg~lA~l~a~ 47 (153)
T cd00741 12 NLVLPLLKSALAQ--YPDYKIHVTGHSLGGALAGLAGL 47 (153)
T ss_pred HHHHHHHHHHHHH--CCCCeEEEEEcCHHHHHHHHHHH
Confidence 3344444444332 24579999999999999988776
No 488
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=88.57 E-value=35 Score=35.87 Aligned_cols=229 Identities=15% Similarity=0.102 Sum_probs=112.9
Q ss_pred EEECCCCcEEEEeCCCCCC--CCeecCCCCCCCceeeeccee-cCCCCEEEEEEeccCCCCCCcceEEEEEEcCC--Cce
Q 004816 159 FSNYKDQRLYKHSIDSKDS--SPLPITPDYGEPLVSYADGIF-DPRFNRYVTVREDRRQDALNSTTEIVAIALNG--QNI 233 (729)
Q Consensus 159 ~~~~~~~~l~~~d~~~~~~--~~~~lt~~~~~~~~~~~~~~~-SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~--g~~ 233 (729)
.....++.+.+++... + ....+.... ...+....+ ++++..++...... ...+.+++..+ ...
T Consensus 81 ~~~~~d~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~~~~~~~~~~~~~ 148 (466)
T COG2319 81 LSGSSDGTIKLWDLDN--GEKLIKSLEGLH---DSSVSKLALSSPDGNSILLASSSL-------DGTVKLWDLSTPGKLI 148 (466)
T ss_pred EEecCCCcEEEEEcCC--CceeEEEEeccC---CCceeeEEEECCCcceEEeccCCC-------CccEEEEEecCCCeEE
Confidence 3333566788888775 4 233333321 112334444 88888433333221 13577778775 333
Q ss_pred EEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEE
Q 004816 234 QVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFF 313 (729)
Q Consensus 234 ~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~ 313 (729)
..+...........|+|+++.++... . ....+.++++. .+.. ...+.+.. ..+....|+|+++.++
T Consensus 149 ~~~~~~~~~v~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~-~~~~--~~~~~~~~----~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 149 RTLEGHSESVTSLAFSPDGKLLASGS-S------LDGTIKLWDLR-TGKP--LSTLAGHT----DPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEecCcccEEEEEECCCCCEEEecC-C------CCCceEEEEcC-CCce--EEeeccCC----CceEEEEEcCCcceEE
Confidence 44444555666789999999555443 1 12347788876 4333 44444444 5567788999998333
Q ss_pred EEecCCCceEEEEEEcCCCeEEE-eec-cCccccCCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE
Q 004816 314 VTDRKNGFWNLHKWIESNNEVLA-IYS-LDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS 391 (729)
Q Consensus 314 ~~~~~~g~~~l~~~d~~~g~~~~-l~~-~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~ 391 (729)
.+....+...+| |...+.... ... ..... ...|.+ ++ .++.....++...+|..........
T Consensus 215 ~~~~~d~~i~~w--d~~~~~~~~~~~~~~~~~~-~~~~~~------------~~-~~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 215 ASGSSDGTIRLW--DLSTGKLLRSTLSGHSDSV-VSSFSP------------DG-SLLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEecCCCcEEEE--ECCCCcEEeeecCCCCcce-eEeECC------------CC-CEEEEecCCCcEEEeeecCCCcEEE
Confidence 432213444444 655444433 121 11110 002322 34 3444666677777775543333122
Q ss_pred eeccCCcceEEe-eeeCCEEEEEEeCCCCCceEEEEEcCCCc
Q 004816 392 LLDIPFTDIDNI-TLGNDCLFVEGASGVEPSSVAKVTLDDHK 432 (729)
Q Consensus 392 ~lt~~~~~v~~~-~~~~~~~~~~~~~~~~~~~ly~~d~~~~~ 432 (729)
.+..+...+..+ ..+....++..+.. ....+| +.....
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d-~~~~~~--~~~~~~ 317 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSD-GTVRLW--DLETGK 317 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCC-CcEEEE--EcCCCc
Confidence 221223344444 22233344444444 333344 555543
No 489
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=88.26 E-value=31 Score=39.10 Aligned_cols=240 Identities=8% Similarity=-0.055 Sum_probs=119.8
Q ss_pred cEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeee
Q 004816 166 RLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAF 245 (729)
Q Consensus 166 ~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~ 245 (729)
.+..+|+.+ +....++.-+ ..+.......-+| +|+.+-..+. .......++++|..+++-+.+.+-...-.+
T Consensus 302 ~ve~yd~~~--~~w~~~a~m~---~~r~~~~~~~~~~-~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~ 373 (571)
T KOG4441|consen 302 SVECYDPKT--NEWSSLAPMP---SPRCRVGVAVLNG-KLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAPMNTKRSD 373 (571)
T ss_pred eeEEecCCc--CcEeecCCCC---cccccccEEEECC-EEEEEccccC--CCcccceEEEecCCCCceeccCCccCcccc
Confidence 566778776 6556665542 1222222233344 4444432221 122357899999998876665432221122
Q ss_pred eeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCcEEEEEecCCCc---e
Q 004816 246 PRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGELFFVTDRKNGF---W 322 (729)
Q Consensus 246 ~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~~~~~g~---~ 322 (729)
.....=+..|+.+...+ +.. ....+-.+|.. +.+. ......... .+-.. .-.-+|+||......... .
T Consensus 374 ~~v~~l~g~iYavGG~d-g~~-~l~svE~YDp~-~~~W---~~va~m~~~--r~~~g-v~~~~g~iYi~GG~~~~~~~l~ 444 (571)
T KOG4441|consen 374 FGVAVLDGKLYAVGGFD-GEK-SLNSVECYDPV-TNKW---TPVAPMLTR--RSGHG-VAVLGGKLYIIGGGDGSSNCLN 444 (571)
T ss_pred ceeEEECCEEEEEeccc-ccc-ccccEEEecCC-CCcc---cccCCCCcc--eeeeE-EEEECCEEEEEcCcCCCccccc
Confidence 22233233466555222 211 22346666665 3332 122211100 11111 123467777665541222 3
Q ss_pred EEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCEEEEEEEECC---eEEEEEEECCCCceEeeccCCcc
Q 004816 323 NLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNLIACSYRQNG---RSYLGILDDFGHSLSLLDIPFTD 399 (729)
Q Consensus 323 ~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g---~~~ly~~d~~~g~~~~lt~~~~~ 399 (729)
.+.++|+.+++++.+.+.... .... ....+ ++.||+....++ ...+.++|+.+.+++.++.-...
T Consensus 445 sve~YDP~t~~W~~~~~M~~~----R~~~---g~a~~-----~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 445 SVECYDPETNTWTLIAPMNTR----RSGF---GVAVL-----NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred eEEEEcCCCCceeecCCcccc----cccc---eEEEE-----CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 577999999999988754311 1111 12332 456777766555 34478899999999988644333
Q ss_pred eE--EeeeeCCEEEEEEeCCCCC--ceEEEEEcCCCcce
Q 004816 400 ID--NITLGNDCLFVEGASGVEP--SSVAKVTLDDHKLK 434 (729)
Q Consensus 400 v~--~~~~~~~~~~~~~~~~~~~--~~ly~~d~~~~~~~ 434 (729)
.. .+..-++.+++........ ..+-.+|+.+.+.+
T Consensus 513 rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~ 551 (571)
T KOG4441|consen 513 RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWT 551 (571)
T ss_pred cccccEEEECCEEEEEecccCccccceeEEcCCCCCcee
Confidence 22 2355566676666532221 12444455555543
No 490
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.18 E-value=46 Score=36.80 Aligned_cols=201 Identities=9% Similarity=0.114 Sum_probs=111.2
Q ss_pred CCccCceEEcC-CCcEEEEeecCCCCCceEEEEcCCCCCCCCcccCCCCCcccccccccCCceEEEECCEEEEEECCCCc
Q 004816 88 SKRLGGTAVDG-HGRLIWLESRPTEAGRGVLVKEPAKAGDEPSDITPKEYAVRTTAQEYGGGAFRIFGDTVIFSNYKDQR 166 (729)
Q Consensus 88 ~~~~~~~~~~p-g~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 166 (729)
..++.++.++| .-++.-.-. .|+..||.++...-=+.-.++.. .+| .+.|....+.++. ..++.+
T Consensus 13 SdRVKsVd~HPtePw~la~Ly----nG~V~IWnyetqtmVksfeV~~~--PvR-------a~kfiaRknWiv~-GsDD~~ 78 (794)
T KOG0276|consen 13 SDRVKSVDFHPTEPWILAALY----NGDVQIWNYETQTMVKSFEVSEV--PVR-------AAKFIARKNWIVT-GSDDMQ 78 (794)
T ss_pred CCceeeeecCCCCceEEEeee----cCeeEEEecccceeeeeeeeccc--chh-------hheeeeccceEEE-ecCCce
Confidence 36778899999 777655433 57778898754300000111111 222 1234444444433 345678
Q ss_pred EEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCC-ceEEeeeCCC-eee
Q 004816 167 LYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQ-NIQVLVSGSD-FYA 244 (729)
Q Consensus 167 l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g-~~~~lt~~~~-~~~ 244 (729)
|-+++..+. .+..+...+ ..-....+..|.--+++-.+++ ..|-.++-+.+ ...|..+|.. +..
T Consensus 79 IrVfnynt~-ekV~~FeAH----~DyIR~iavHPt~P~vLtsSDD---------m~iKlW~we~~wa~~qtfeGH~HyVM 144 (794)
T KOG0276|consen 79 IRVFNYNTG-EKVKTFEAH----SDYIRSIAVHPTLPYVLTSSDD---------MTIKLWDWENEWACEQTFEGHEHYVM 144 (794)
T ss_pred EEEEecccc-eeeEEeecc----ccceeeeeecCCCCeEEecCCc---------cEEEEeeccCceeeeeEEcCcceEEE
Confidence 888888772 334444444 2445677788888776655554 23555565543 2345555544 456
Q ss_pred eeeeCC-CCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCce
Q 004816 245 FPRMDP-RGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFW 322 (729)
Q Consensus 245 ~~~~SP-DG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~ 322 (729)
..+|.| |-++.|-.+.|+ .|-++.+. ... ..-.+.+++ .++..+.+-+-|. =|.++.. +..
T Consensus 145 qv~fnPkD~ntFaS~sLDr--------TVKVWslg-s~~--~nfTl~gHe----kGVN~Vdyy~~gdkpylIsga--DD~ 207 (794)
T KOG0276|consen 145 QVAFNPKDPNTFASASLDR--------TVKVWSLG-SPH--PNFTLEGHE----KGVNCVDYYTGGDKPYLISGA--DDL 207 (794)
T ss_pred EEEecCCCccceeeeeccc--------cEEEEEcC-CCC--Cceeeeccc----cCcceEEeccCCCcceEEecC--CCc
Confidence 789999 666666555332 36666665 332 233455666 5666777777665 3434332 234
Q ss_pred EEEEEEcCCCe
Q 004816 323 NLHKWIESNNE 333 (729)
Q Consensus 323 ~l~~~d~~~g~ 333 (729)
.+-++|-++..
T Consensus 208 tiKvWDyQtk~ 218 (794)
T KOG0276|consen 208 TIKVWDYQTKS 218 (794)
T ss_pred eEEEeecchHH
Confidence 45566766654
No 491
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=88.03 E-value=7.9 Score=43.14 Aligned_cols=118 Identities=12% Similarity=0.095 Sum_probs=68.9
Q ss_pred eeeeeeeCCCCCeEEEEEecCCC------------CCCCCcEEEEEEecCCC----C-eeeeE-EecCC-----------
Q 004816 242 FYAFPRMDPRGERMAWIEWHHPN------------MPWDKAELWVGYISENG----D-VYKRV-CVAGF----------- 292 (729)
Q Consensus 242 ~~~~~~~SPDG~~la~~~~~~~~------------~~~~~~~l~~~d~~~~g----~-~~~~~-~~~~~----------- 292 (729)
...+.+++|....||+....... ..+...+||.++.+ .+ . ..... +..+.
T Consensus 351 RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~-~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 351 RPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPD-GNDHAATTFTWELFLVGGDPTDASGNGSNK 429 (524)
T ss_pred CccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEeccc-CCccccceeEEEEEEEecCcccccccccCc
Confidence 33456788987788887654441 12345678888876 33 1 11111 22221
Q ss_pred -CCCccccccCceeCCCCcEEEEEecCCCceE--------------------EEEEEcCCCeEEEee--ccCccccCCcc
Q 004816 293 -DPTIVESPTEPKWSSKGELFFVTDRKNGFWN--------------------LHKWIESNNEVLAIY--SLDAEFSRPLW 349 (729)
Q Consensus 293 -~~~~~~~~~~~~wspDG~l~~~~~~~~g~~~--------------------l~~~d~~~g~~~~l~--~~~~~~~~~~w 349 (729)
+..+..+..++.|+++|+|++..+....... ++..++.+++.+++. +...+++.+.|
T Consensus 430 ~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~f 509 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCF 509 (524)
T ss_pred ccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceE
Confidence 1122245667889999997777665222111 334456677777776 45568888888
Q ss_pred cccCcceeeeeecCCCCEEEEEE
Q 004816 350 VFGINSYEIIQSHGEKNLIACSY 372 (729)
Q Consensus 350 ~~~~~~~~~l~~~~~~~~l~~~s 372 (729)
++ |++.+++.-
T Consensus 510 sp------------Dg~tlFvni 520 (524)
T PF05787_consen 510 SP------------DGRTLFVNI 520 (524)
T ss_pred CC------------CCCEEEEEE
Confidence 86 777776643
No 492
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=87.82 E-value=34 Score=34.86 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=50.4
Q ss_pred EEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCcccccc
Q 004816 222 EIVAIALNGQNIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPT 301 (729)
Q Consensus 222 ~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~ 301 (729)
.=+++|+.++ +.+.+|...-.+|+|- ||+ |++..+ ...+++.+|.+ +|+...+...++ ...
T Consensus 186 gG~vidv~s~--evl~~GLsmPhSPRWh-dgr-Lwvlds-------gtGev~~vD~~-~G~~e~Va~vpG-------~~r 246 (335)
T TIGR03032 186 GGCVIDIPSG--EVVASGLSMPHSPRWY-QGK-LWLLNS-------GRGELGYVDPQ-AGKFQPVAFLPG-------FTR 246 (335)
T ss_pred CeEEEEeCCC--CEEEcCccCCcCCcEe-CCe-EEEEEC-------CCCEEEEEcCC-CCcEEEEEECCC-------CCc
Confidence 3456888877 4566777777789996 555 777763 23569999987 687655544444 346
Q ss_pred CceeCCCCcEEEEEec
Q 004816 302 EPKWSSKGELFFVTDR 317 (729)
Q Consensus 302 ~~~wspDG~l~~~~~~ 317 (729)
...|. |++++++..
T Consensus 247 GL~f~--G~llvVgmS 260 (335)
T TIGR03032 247 GLAFA--GDFAFVGLS 260 (335)
T ss_pred cccee--CCEEEEEec
Confidence 78887 776666543
No 493
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.72 E-value=3.6 Score=46.06 Aligned_cols=197 Identities=10% Similarity=-0.007 Sum_probs=106.2
Q ss_pred eecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC-CceEEe---eeCCCeeeeeeeCCCCCeEEEEEecCCCCCCC
Q 004816 193 YADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG-QNIQVL---VSGSDFYAFPRMDPRGERMAWIEWHHPNMPWD 268 (729)
Q Consensus 193 ~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~-g~~~~l---t~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~ 268 (729)
.+|++|+---+.+++++... +.|.++|+.- +.-++| .+.........|++-.-.|.... ..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~n--------G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG-SQ------ 154 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTN--------GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG-SQ------ 154 (839)
T ss_pred hhhcccccchhhhheeecCC--------CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec-CC------
Confidence 37888887555567776654 5688888864 122333 23444556778988888777555 33
Q ss_pred CcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-EEEEEecCCCceEEEEEEcCCC--eEEEeeccCcccc
Q 004816 269 KAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE-LFFVTDRKNGFWNLHKWIESNN--EVLAIYSLDAEFS 345 (729)
Q Consensus 269 ~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~-l~~~~~~~~g~~~l~~~d~~~g--~~~~l~~~~~~~~ 345 (729)
...|-.+|+. ..+- ...+.+.. .++..+.|+|--. .++...+ .|.-++| |+.-- -.+.++...+-+.
T Consensus 155 Dg~vK~~DlR-~~~S--~~t~~~nS----ESiRDV~fsp~~~~~F~s~~d-sG~lqlW--DlRqp~r~~~k~~AH~GpV~ 224 (839)
T KOG0269|consen 155 DGTVKCWDLR-SKKS--KSTFRSNS----ESIRDVKFSPGYGNKFASIHD-SGYLQLW--DLRQPDRCEKKLTAHNGPVL 224 (839)
T ss_pred CceEEEEeee-cccc--cccccccc----hhhhceeeccCCCceEEEecC-CceEEEe--eccCchhHHHHhhcccCceE
Confidence 2347788887 3321 23333443 6788999999655 4545555 7776666 44321 1223333332222
Q ss_pred CCcccccCcceeeeeecCCCCEEEEEEEECCeEEEEEEECCCCceE-eeccC-CcceEEe-eeeCCEEEEEEeCCCCCce
Q 004816 346 RPLWVFGINSYEIIQSHGEKNLIACSYRQNGRSYLGILDDFGHSLS-LLDIP-FTDIDNI-TLGNDCLFVEGASGVEPSS 422 (729)
Q Consensus 346 ~~~w~~~~~~~~~l~~~~~~~~l~~~s~~~g~~~ly~~d~~~g~~~-~lt~~-~~~v~~~-~~~~~~~~~~~~~~~~~~~ 422 (729)
--.|.| ++.++.+..+|+...||-+. +.+.. .++-. -..+..+ ..+.....+.+++.....+
T Consensus 225 c~nwhP-------------nr~~lATGGRDK~vkiWd~t--~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dts 289 (839)
T KOG0269|consen 225 CLNWHP-------------NREWLATGGRDKMVKIWDMT--DSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTS 289 (839)
T ss_pred EEeecC-------------CCceeeecCCCccEEEEecc--CCCccceeEEeecceeeeeeeccCccchhhhhhccccce
Confidence 234553 44566666688888888654 33322 22211 1223333 3333333333444444455
Q ss_pred EEEEEcC
Q 004816 423 VAKVTLD 429 (729)
Q Consensus 423 ly~~d~~ 429 (729)
++++|+.
T Consensus 290 V~VWDvr 296 (839)
T KOG0269|consen 290 VHVWDVR 296 (839)
T ss_pred EEEEeec
Confidence 6666553
No 494
>PLN02153 epithiospecifier protein
Probab=87.57 E-value=40 Score=35.39 Aligned_cols=201 Identities=8% Similarity=0.103 Sum_probs=94.8
Q ss_pred eEEEEEEcCCCceEEeeeCCC--e--eeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCC-CC
Q 004816 221 TEIVAIALNGQNIQVLVSGSD--F--YAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFD-PT 295 (729)
Q Consensus 221 ~~l~~~dl~~g~~~~lt~~~~--~--~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~-~~ 295 (729)
.++|++|+.+.+-+.+..... . ..+.+...-+.+|+...-..... ...+++++|+. +.+........... +.
T Consensus 50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~--~~~~v~~yd~~-t~~W~~~~~~~~~~~p~ 126 (341)
T PLN02153 50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKR--EFSDFYSYDTV-KNEWTFLTKLDEEGGPE 126 (341)
T ss_pred CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCC--ccCcEEEEECC-CCEEEEeccCCCCCCCC
Confidence 468888888766655543111 0 01121222234565554222111 23469999987 55443221111000 00
Q ss_pred ccccccCceeCCCCcEEEEEecC-CC-------ceEEEEEEcCCCeEEEeeccCccccCCcccccCcceeeeeecCCCCE
Q 004816 296 IVESPTEPKWSSKGELFFVTDRK-NG-------FWNLHKWIESNNEVLAIYSLDAEFSRPLWVFGINSYEIIQSHGEKNL 367 (729)
Q Consensus 296 ~~~~~~~~~wspDG~l~~~~~~~-~g-------~~~l~~~d~~~g~~~~l~~~~~~~~~~~w~~~~~~~~~l~~~~~~~~ 367 (729)
...... ...-+++||+..-.. .+ ...++.+|+++.+++.+....... .+. ........ ++ .
T Consensus 127 -~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~-~~r---~~~~~~~~----~~-~ 195 (341)
T PLN02153 127 -ARTFHS-MASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENF-EKR---GGAGFAVV----QG-K 195 (341)
T ss_pred -CceeeE-EEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCC-CCC---CcceEEEE----CC-e
Confidence 011111 223456655443321 11 235889999999988876321000 000 00111222 33 3
Q ss_pred EEEEEEE------CC-----eEEEEEEECCCCceEeecc----CCc-ceEEeeeeCCEEEEEEeCCC----------C-C
Q 004816 368 IACSYRQ------NG-----RSYLGILDDFGHSLSLLDI----PFT-DIDNITLGNDCLFVEGASGV----------E-P 420 (729)
Q Consensus 368 l~~~s~~------~g-----~~~ly~~d~~~g~~~~lt~----~~~-~v~~~~~~~~~~~~~~~~~~----------~-~ 420 (729)
+|+.... .| ...|+.+|+.+.+++.+.. +.. .......-+++++++..... . .
T Consensus 196 iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ 275 (341)
T PLN02153 196 IWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLS 275 (341)
T ss_pred EEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcccccccccccc
Confidence 4443211 11 2468999999999988753 111 11222344677877776421 1 1
Q ss_pred ceEEEEEcCCCccee
Q 004816 421 SSVAKVTLDDHKLKA 435 (729)
Q Consensus 421 ~~ly~~d~~~~~~~~ 435 (729)
..+|.+|+.+.+.++
T Consensus 276 n~v~~~d~~~~~W~~ 290 (341)
T PLN02153 276 NEGYALDTETLVWEK 290 (341)
T ss_pred ccEEEEEcCccEEEe
Confidence 258888887776543
No 495
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=87.50 E-value=2.6 Score=42.19 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCCCCccc-cchhhhHHHhh--CCcEEEEecCCCCCCCchhHHHhhccCCCcccHHHHHHHHHHHHhCCC
Q 004816 491 KPPLLVKSHGGPTSEARG-ILNLSIQYWTS--RGWAFVDVNYGGSTGYGREFRERLLGRWGIVDVNDCCSCATFLVGSGK 567 (729)
Q Consensus 491 ~~P~vv~~hGg~~~~~~~-~~~~~~~~la~--~G~~v~~~d~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 567 (729)
..| ||+.||.+.+.... ........+.+ -|..|..++.- .+. ..+-.....++ .-+.+..+.+.+.+.+.
T Consensus 5 ~~P-vViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~ig-~~~-~~D~~~s~f~~----v~~Qv~~vc~~l~~~p~ 77 (279)
T PF02089_consen 5 PLP-VVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEIG-NDP-SEDVENSFFGN----VNDQVEQVCEQLANDPE 77 (279)
T ss_dssp S---EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--SS-SSH-HHHHHHHHHSH----HHHHHHHHHHHHHH-GG
T ss_pred CCc-EEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEEC-CCc-chhhhhhHHHH----HHHHHHHHHHHHhhChh
Confidence 345 66679975443322 23333333222 38888888862 110 01111111111 11223334444444333
Q ss_pred CCCCcEEEEEcChHHHHHHHHHh-CC-CcceEEEEecc
Q 004816 568 ADEKRLCITGGSAGGYTTLAALA-FR-DTFKAGASLYG 603 (729)
Q Consensus 568 ~d~~ri~i~G~S~GG~~a~~~~~-~~-~~~~a~v~~~~ 603 (729)
+. +-+.++|+|.||.+.=.++. .+ ..++-.|++.+
T Consensus 78 L~-~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlgg 114 (279)
T PF02089_consen 78 LA-NGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGG 114 (279)
T ss_dssp GT-T-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES-
T ss_pred hh-cceeeeeeccccHHHHHHHHHCCCCCceeEEEecC
Confidence 32 57999999999998866665 33 35777887654
No 496
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.44 E-value=33 Score=35.77 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=87.3
Q ss_pred ccCceEEcCCCcEEEEeecC-CCCCceEEEEcCCCCCCCC-ccc-CCCCCcc-----cccccccCCceEEE--ECCEEEE
Q 004816 90 RLGGTAVDGHGRLIWLESRP-TEAGRGVLVKEPAKAGDEP-SDI-TPKEYAV-----RTTAQEYGGGAFRI--FGDTVIF 159 (729)
Q Consensus 90 ~~~~~~~~pg~~~~~~~~~~-~~~~~~~l~~~~~~~~g~~-~~l-~~~~~~~-----~~~~~~~~~~~~~~--~~~~i~~ 159 (729)
..+++++.+++.+|+..-.. .......|++++.+ |.. +.+ +|..+.. ..+....|-..++. ++..++.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 45788883366666664211 11112468888877 343 333 3443311 11111123333444 3444544
Q ss_pred EECCC---------------CcEEEEeCCCCCC-CCe----ecCCCC-CCCceeeecceecCCCCEEEEEEeccCCCCCC
Q 004816 160 SNYKD---------------QRLYKHSIDSKDS-SPL----PITPDY-GEPLVSYADGIFDPRFNRYVTVREDRRQDALN 218 (729)
Q Consensus 160 ~~~~~---------------~~l~~~d~~~~~~-~~~----~lt~~~-~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~ 218 (729)
..+.. -+|+.+|..+. + ... ++.... ......+.++.+-|||+.++--+..... ..
T Consensus 164 ~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~-~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~--~~ 240 (326)
T PF13449_consen 164 AMESPLKQDGPRANPDNGSPLRILRYDPKTP-GEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPG--TG 240 (326)
T ss_pred EECccccCCCcccccccCceEEEEEecCCCC-CccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCC--cc
Confidence 43321 14777777641 1 111 222100 0013567888999999965555442221 12
Q ss_pred cceEEEEEEcCCC----ce------------EEee-e------CCCeeeeeeeCC--CCCeEEEEEecCCCCCC-CCcEE
Q 004816 219 STTEIVAIALNGQ----NI------------QVLV-S------GSDFYAFPRMDP--RGERMAWIEWHHPNMPW-DKAEL 272 (729)
Q Consensus 219 ~~~~l~~~dl~~g----~~------------~~lt-~------~~~~~~~~~~SP--DG~~la~~~~~~~~~~~-~~~~l 272 (729)
....||.+++... .. +.+. . ..+.+.+.+|-| ||++.+++-.|+...+. ..+++
T Consensus 241 ~~~ri~~v~l~~at~~~~~~~l~~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF~~~~q~T~l 320 (326)
T PF13449_consen 241 NYKRIYRVDLSDATDVPGIESLEGADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNFNPLTQRTQL 320 (326)
T ss_pred ceEEEEEEEcccccccccccccccccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCCCCCCCCEEE
Confidence 2567999998642 11 0111 0 034456777876 77775555545544332 44445
Q ss_pred EEEE
Q 004816 273 WVGY 276 (729)
Q Consensus 273 ~~~d 276 (729)
+.+.
T Consensus 321 ~~f~ 324 (326)
T PF13449_consen 321 LLFE 324 (326)
T ss_pred EEEE
Confidence 5443
No 497
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=87.38 E-value=27 Score=38.29 Aligned_cols=55 Identities=9% Similarity=-0.073 Sum_probs=37.3
Q ss_pred eeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEeeeCCCeeeeeeeCCCCCe
Q 004816 191 VSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVLVSGSDFYAFPRMDPRGER 254 (729)
Q Consensus 191 ~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~lt~~~~~~~~~~~SPDG~~ 254 (729)
..+...+.+|.|.+|+--+++ ..|-++.+.||.......-.+.....+|+|.++.
T Consensus 401 g~Vr~iSvdp~G~wlasGsdD---------GtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~ 455 (733)
T KOG0650|consen 401 GLVRSISVDPSGEWLASGSDD---------GTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDL 455 (733)
T ss_pred CeEEEEEecCCcceeeecCCC---------CcEEEEEeecceEEEEEeecceeEEEEecCCCCc
Confidence 345667788888876654443 3466778888876544444456677899998874
No 498
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=87.30 E-value=23 Score=33.62 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=78.2
Q ss_pred CCCcEEEEeCCCCCCCCeecCCCC---CCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCCCceEEe-ee
Q 004816 163 KDQRLYKHSIDSKDSSPLPITPDY---GEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNGQNIQVL-VS 238 (729)
Q Consensus 163 ~~~~l~~~d~~~~~~~~~~lt~~~---~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~g~~~~l-t~ 238 (729)
.+..|-.||+.-+ ..++.|.... +-+...+...+..|.|+.|+--..+ +.-.++|+.+|...|- -+
T Consensus 202 qdktirfwdlrv~-~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~d---------ssc~lydirg~r~iq~f~p 271 (350)
T KOG0641|consen 202 QDKTIRFWDLRVN-SCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHAD---------SSCMLYDIRGGRMIQRFHP 271 (350)
T ss_pred CCceEEEEeeecc-ceeeeccCcccCCCcccceeEEEEECCCcceeeeccCC---------CceEEEEeeCCceeeeeCC
Confidence 4455666666431 2333443321 1112345677899999966543332 2344558888876544 34
Q ss_pred CCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCee---eeEEecCCCCCccccccCceeCCCCcEEEEE
Q 004816 239 GSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVY---KRVCVAGFDPTIVESPTEPKWSSKGELFFVT 315 (729)
Q Consensus 239 ~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~---~~~~~~~~~~~~~~~~~~~~wspDG~l~~~~ 315 (729)
........+|||.--++.-.+. ...|.+.|+. |.+. ...+..+.. .-.-...|.|.. +-|++
T Consensus 272 hsadir~vrfsp~a~yllt~sy--------d~~ikltdlq--gdla~el~~~vv~ehk----dk~i~~rwh~~d-~sfis 336 (350)
T KOG0641|consen 272 HSADIRCVRFSPGAHYLLTCSY--------DMKIKLTDLQ--GDLAHELPIMVVAEHK----DKAIQCRWHPQD-FSFIS 336 (350)
T ss_pred CccceeEEEeCCCceEEEEecc--------cceEEEeecc--cchhhcCceEEEEecc----CceEEEEecCcc-ceeee
Confidence 4445667899998887776663 3458888887 3221 122333333 223456898865 66665
Q ss_pred ecCCCceEEEEEE
Q 004816 316 DRKNGFWNLHKWI 328 (729)
Q Consensus 316 ~~~~g~~~l~~~d 328 (729)
........||.++
T Consensus 337 ssadkt~tlwa~~ 349 (350)
T KOG0641|consen 337 SSADKTATLWALN 349 (350)
T ss_pred ccCcceEEEeccC
Confidence 5423455666543
No 499
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=87.14 E-value=6.3 Score=39.90 Aligned_cols=74 Identities=12% Similarity=-0.008 Sum_probs=49.1
Q ss_pred EECCEEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCC-----------CCCcc
Q 004816 152 IFGDTVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQD-----------ALNST 220 (729)
Q Consensus 152 ~~~~~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~-----------~~~~~ 220 (729)
|.++++.+.+...+.|+.+|.++ |+.+.+...++ ......|. |+.++......... -....
T Consensus 210 WhdgrLwvldsgtGev~~vD~~~--G~~e~Va~vpG----~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~ 281 (335)
T TIGR03032 210 WYQGKLWLLNSGRGELGYVDPQA--GKFQPVAFLPG----FTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALG 281 (335)
T ss_pred EeCCeEEEEECCCCEEEEEcCCC--CcEEEEEECCC----CCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhc
Confidence 45778999998889999999987 77788877643 33666776 88655443322211 01123
Q ss_pred eEEEEEEcCCCce
Q 004816 221 TEIVAIALNGQNI 233 (729)
Q Consensus 221 ~~l~~~dl~~g~~ 233 (729)
..|+++|+.+|++
T Consensus 282 CGv~vidl~tG~v 294 (335)
T TIGR03032 282 CGVAVIDLNSGDV 294 (335)
T ss_pred ccEEEEECCCCCE
Confidence 6688888877764
No 500
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.05 E-value=25 Score=37.03 Aligned_cols=146 Identities=10% Similarity=0.037 Sum_probs=86.2
Q ss_pred EEEEEECCCCcEEEEeCCCCCCCCeecCCCCCCCceeeecceecCCCCEEEEEEeccCCCCCCcceEEEEEEcCC----C
Q 004816 156 TVIFSNYKDQRLYKHSIDSKDSSPLPITPDYGEPLVSYADGIFDPRFNRYVTVREDRRQDALNSTTEIVAIALNG----Q 231 (729)
Q Consensus 156 ~i~~~~~~~~~l~~~d~~~~~~~~~~lt~~~~~~~~~~~~~~~SPdG~~l~~~~~~~~~~~~~~~~~l~~~dl~~----g 231 (729)
.|+++...+..|.+||+++ +++.+..... +..+....|.|.--.++....-+ .++.+.|... +
T Consensus 257 nVLaSgsaD~TV~lWD~~~--g~p~~s~~~~---~k~Vq~l~wh~~~p~~LLsGs~D--------~~V~l~D~R~~~~s~ 323 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDT--GKPKSSITHH---GKKVQTLEWHPYEPSVLLSGSYD--------GTVALKDCRDPSNSG 323 (463)
T ss_pred eeEEecCCCceEEEEEcCC--CCcceehhhc---CCceeEEEecCCCceEEEecccc--------ceEEeeeccCccccC
Confidence 5788877888999999999 7776655431 45677788999776655443322 3455555531 1
Q ss_pred ceEEeeeCCCeeeeeeeCCCCCeEEEEEecCCCCCCCCcEEEEEEecCCCCeeeeEEecCCCCCccccccCceeCCCCc-
Q 004816 232 NIQVLVSGSDFYAFPRMDPRGERMAWIEWHHPNMPWDKAELWVGYISENGDVYKRVCVAGFDPTIVESPTEPKWSSKGE- 310 (729)
Q Consensus 232 ~~~~lt~~~~~~~~~~~SPDG~~la~~~~~~~~~~~~~~~l~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~wspDG~- 310 (729)
..-.. .+......|.|-....++++.+. ..||-+|+...|+. +..+..++ ..++.+..++.-.
T Consensus 324 ~~wk~---~g~VEkv~w~~~se~~f~~~tdd-------G~v~~~D~R~~~~~--vwt~~AHd----~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 324 KEWKF---DGEVEKVAWDPHSENSFFVSTDD-------GTVYYFDIRNPGKP--VWTLKAHD----DEISGLSVNIQTPG 387 (463)
T ss_pred ceEEe---ccceEEEEecCCCceeEEEecCC-------ceEEeeecCCCCCc--eeEEEecc----CCcceEEecCCCCc
Confidence 11111 12234456877777777776433 34888887733443 44455555 5667777766544
Q ss_pred EEEEEecCCCceEEEEEEcCC
Q 004816 311 LFFVTDRKNGFWNLHKWIESN 331 (729)
Q Consensus 311 l~~~~~~~~g~~~l~~~d~~~ 331 (729)
++.+... .+.-.||.++...
T Consensus 388 ~l~t~s~-d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 388 LLSTAST-DKVVKLWKFDVDS 407 (463)
T ss_pred ceeeccc-cceEEEEeecCCC
Confidence 4444333 4556666665443
Done!