BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004817
(729 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|B Chain B, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|C Chain C, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
pdb|1KPL|D Chain D, Crystal Structure Of The Clc Chloride Channel From S.
Typhimurium
Length = 473
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 98/211 (46%), Gaps = 18/211 (8%)
Query: 37 LACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNXXXXXXXXX 96
+A +VG LTGL+ AV + ++ A+V + L + ++
Sbjct: 38 MAAVVGTLTGLVGVAFEKAVSWVQNMRIGALVQVADHAFLLWPLAFI--LSALLAMVGYF 95
Query: 97 XXXXXXPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVH 156
P A G GIPEI+ L + + L VK IG +G + AG+ LG+EGP V
Sbjct: 96 LVRKFAPEAGGSGIPEIEGALEELRPVRWW--RVLPVKFIGGMGTLGAGMVLGREGPTVQ 153
Query: 157 IGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSL 216
IG + ++ D R++ + R L+ G+++G+ AAF AP+ G+LF +
Sbjct: 154 IGGNLGRMV----LDVFRMR--------SAEARHTLLATGAAAGLSAAFNAPLAGILFII 201
Query: 217 EEVATWWRSALLWRTFFSTAVVV--VVLRAF 245
EE+ +R L+ T V++ +V R F
Sbjct: 202 EEMRPQFRYNLISIKAVFTGVIMSSIVFRIF 232
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMG- 447
N+ F +L FI + L+ F P G+F P++ +G+ G GMA
Sbjct: 318 NLIPIAAAGNFSVGLLLFIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAV 377
Query: 448 --SYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 479
+++ G +A+ G +LMA S+R ++ V+
Sbjct: 378 LFPQYHLEAGTFAIAGMGALMAASVRAPLTGIVL 411
>pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|B Chain B, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|C Chain C, Crystal Structure Of A Eukaryotic Clc Transporter
pdb|3ORG|D Chain D, Crystal Structure Of A Eukaryotic Clc Transporter
Length = 632
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 12/185 (6%)
Query: 398 EFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY--TNIDQG 455
F + +++ I+ IL ++ G+ +P+G+F+P L+G+ +GRL G M I G
Sbjct: 315 HFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPG 374
Query: 456 LYAVLGAASLMAGSMRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEII 515
YAV+GAA+ AG R +S VI A VG++FN S+YE +
Sbjct: 375 SYAVVGAAAFTAGVTR-ALSCAVIIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETL 433
Query: 516 LELKGLPFL-----DAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNG 570
+ +K LP++ D PE M + I+ +P + S + + I++ N
Sbjct: 434 VLMKHLPYMPILRRDRSPE--MTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLV-- 489
Query: 571 FPVLD 575
FPV+D
Sbjct: 490 FPVID 494
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 12/134 (8%)
Query: 105 AAGPGIPEIKAYLNGV--DTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
A G G+P++K+ L+G + L K +G I A+ GL +G EGP VHI IA
Sbjct: 77 AEGSGLPQMKSILSGFYDKMRSALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIA 136
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRR-DLITCGSSSGVCAAFRAPVGGVLFSLEEVAT 221
+ + + DR R + + G+ ++F AP+GGVL+S+E +A+
Sbjct: 137 ---------HQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIAS 187
Query: 222 WWRSALLWRTFFST 235
++ W+ S
Sbjct: 188 FYLVQAFWKGVLSA 201
>pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3ND0|B Chain B, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+
ANTIPORTER
pdb|3Q17|A Chain A, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
pdb|3Q17|B Chain B, Structure Of A Slow Clc Cl-H+ ANTIPORTER FROM A
CYANOBACTERIUM IN Bromide
Length = 466
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 94/210 (44%), Gaps = 23/210 (10%)
Query: 38 ACLVGLLTGLIATLINLAVENIAGYK--LLAVVSFIEKDRYLQGFLYFTGVNXXXXXXXX 95
A +VGL+TG++ AV N+ ++ L +++ I +L L G+
Sbjct: 35 AIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGM----VALSF 90
Query: 96 XXXXXXXPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLV 155
P +G GIP+I+ +L G P ++ L +K++G ++ AG+ G EGP +
Sbjct: 91 WLMKRFAPDTSGSGIPQIEGHLEG-KLPLVW-QRVLPIKLVGGFLSLGAGMLAGFEGPTI 148
Query: 156 HIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFS 215
+G I + G W + ++R LI G+ +G+ AF AP+ GV
Sbjct: 149 QMGGSIGQMTGG-----------WFK--ATQENQRILIAVGAGAGLATAFNAPLAGVALI 195
Query: 216 LEEVATWWRSALLW--RTFFSTAVVVVVLR 243
EE+ +RS L F + ++LR
Sbjct: 196 GEEMHPRFRSQTLAYHSLLFGCVMATIILR 225
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 36.2 bits (82), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIWEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG++GP V IG I
Sbjct: 102 PEAGGAGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +E +
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEHMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+ GP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRAGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+ GP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRAGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIR 387
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 86 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 143
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 144 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 191
Query: 223 WRSALL 228
+R L+
Sbjct: 192 FRYTLI 197
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +E++
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEQMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG++GP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +E +
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEVMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 303 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 362
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 363 LFPQYHLEAGTFAIAGMGALLAASIR 388
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 87 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 144
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 145 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 192
Query: 223 WRSALL 228
+R L+
Sbjct: 193 FRYTLI 198
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF + E+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIYEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 302 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 361
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 362 LFPQYHLEAGTFAIAGMGALLAASIR 387
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG+EGP V IG I
Sbjct: 86 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIG 143
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 144 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPC 191
Query: 223 WRSALL 228
+R L+
Sbjct: 192 FRYTLI 197
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 389 NIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA--- 445
N+ T F ++ F+ I L+ F P G+F P++ +G+ G GM
Sbjct: 318 NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVE 377
Query: 446 MGSYTNIDQGLYAVLGAASLMAGSMR 471
+ +++ G +A+ G +L+A S+R
Sbjct: 378 LFPQYHLEAGTFAIAGMGALLAASIR 403
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 103 PTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIA 162
P A G GIPEI+ L D + L VK G +G + G+ LG++GP V IG I
Sbjct: 102 PEAGGSGIPEIEGALE--DQRPVRWWRVLPVKFFGGLGTLGGGMVLGRQGPTVQIGGNIG 159
Query: 163 SLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATW 222
++ D R+K D R L+ G+++G+ AAF AP+ G+LF +EE+
Sbjct: 160 RMV----LDIFRLK--------GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQ 207
Query: 223 WRSALL 228
+R L+
Sbjct: 208 FRYTLI 213
>pdb|2J9L|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2J9L|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Atp
pdb|2JA3|A Chain A, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|B Chain B, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|C Chain C, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|D Chain D, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|E Chain E, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
pdb|2JA3|F Chain F, Cytoplasmic Domain Of The Human Chloride Transporter Clc-5
In Complex With Adp
Length = 185
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 34/155 (21%), Positives = 70/155 (45%), Gaps = 33/155 (21%)
Query: 556 VSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 615
V + ++ TT++GFPV+ ++ + L G +LR L++++ + R+
Sbjct: 36 VEDVETIISETTYSGFPVV---------VSRESQRLVGFVLRRDLIISI------ENARK 80
Query: 616 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKA 673
++ V S + E + + ++ +DL P T T TP ++
Sbjct: 81 KQDGVVST--SIIYFTEHSPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIV-------- 130
Query: 674 MVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 708
+ +FR++GLR LV ++GI+T++D+
Sbjct: 131 VDIFRKLGLRQCLVTHN------GRLLGIITKKDV 159
>pdb|3NE8|A Chain A, The Crystal Structure Of A Domain From
N-Acetylmuramoyl-L-Alanine Amidase Of Bartonella
Henselae Str. Houston-1
Length = 234
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 610 LQEKRRTEEWEVREKFSWVELAEREGKIEE------VAVTSEEMEMYIDLHPLTNTTPYT 663
LQ+ T R+ ++ L+ER K +E +++ ++ ID+H L T YT
Sbjct: 43 LQKGSHTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADT----IDVHSLRGATVYT 98
Query: 664 VIESMSVAKAMVLFRQVGLRHLL-VVPKYEAAGVSPVVGILTRQDLRAFNI 713
+ + S A A L LL +PK E+ ++ ++ LTR++ AF+I
Sbjct: 99 ISDEASDAIAKSLAESENKVDLLDGLPKEESLELTDILLDLTRRETHAFSI 149
>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of
Hsp70 Interacting Protein
Length = 179
Score = 29.3 bits (64), Expect = 8.8, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 600 LVLALKKKW-FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEME 648
L +A KK+W ++EKR ++E E+ S + LAE+E ++++ S++ +
Sbjct: 19 LRIAKKKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQ 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,252,234
Number of Sequences: 62578
Number of extensions: 790616
Number of successful extensions: 2054
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1936
Number of HSP's gapped (non-prelim): 69
length of query: 729
length of database: 14,973,337
effective HSP length: 106
effective length of query: 623
effective length of database: 8,340,069
effective search space: 5195862987
effective search space used: 5195862987
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)