Query 004817
Match_columns 729
No_of_seqs 257 out of 2410
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0474 Cl- channel CLC-7 and 100.0 1E-108 3E-113 877.6 46.0 697 6-727 59-761 (762)
2 PRK01862 putative voltage-gate 100.0 5E-75 1.1E-79 669.6 56.7 542 36-714 26-572 (574)
3 KOG0475 Cl- channel CLC-3 and 100.0 6.4E-76 1.4E-80 629.7 33.8 624 1-712 14-694 (696)
4 KOG0476 Cl- channel CLC-2 and 100.0 6.2E-74 1.3E-78 621.6 30.1 636 26-714 87-859 (931)
5 cd03685 ClC_6_like ClC-6-like 100.0 2.3E-69 5E-74 602.8 47.1 456 6-527 4-462 (466)
6 cd03684 ClC_3_like ClC-3-like 100.0 6.2E-64 1.3E-68 556.7 40.8 421 42-524 1-445 (445)
7 cd03683 ClC_1_like ClC-1-like 100.0 8.8E-62 1.9E-66 537.2 40.7 410 35-526 2-426 (426)
8 cd01036 ClC_euk Chloride chann 100.0 9.4E-61 2E-65 528.0 37.4 403 42-513 1-416 (416)
9 PRK01610 putative voltage-gate 100.0 7.9E-59 1.7E-63 511.3 42.2 408 33-519 3-417 (418)
10 PRK05277 chloride channel prot 100.0 6.4E-57 1.4E-61 502.0 45.4 409 36-519 2-417 (438)
11 cd01031 EriC ClC chloride chan 100.0 3.8E-57 8.2E-62 499.2 41.0 397 41-516 1-401 (402)
12 cd01033 ClC_like Putative ClC 100.0 1.2E-55 2.5E-60 483.2 37.9 383 42-507 1-386 (388)
13 COG0038 EriC Chloride channel 100.0 5E-55 1.1E-59 483.5 43.3 409 34-524 22-436 (443)
14 cd01034 EriC_like ClC chloride 100.0 1.6E-54 3.4E-59 475.8 38.2 385 46-513 1-390 (390)
15 PF00654 Voltage_CLC: Voltage 100.0 1.2E-54 2.5E-59 471.4 31.0 346 90-506 2-355 (355)
16 cd00400 Voltage_gated_ClC CLC 100.0 3E-51 6.4E-56 450.4 38.1 380 42-501 1-383 (383)
17 cd03682 ClC_sycA_like ClC sycA 100.0 1.3E-49 2.9E-54 434.7 39.1 376 38-513 2-378 (378)
18 PRK03655 putative ion channel 100.0 3.5E-47 7.5E-52 416.6 39.2 377 34-503 12-397 (414)
19 cd01034 EriC_like ClC chloride 99.7 7.2E-16 1.6E-20 169.8 19.4 182 34-244 201-382 (390)
20 PRK01862 putative voltage-gate 99.7 6.9E-16 1.5E-20 178.6 19.9 185 278-507 24-219 (574)
21 cd01033 ClC_like Putative ClC 99.7 1E-15 2.3E-20 168.1 15.2 182 34-244 204-385 (388)
22 PRK05277 chloride channel prot 99.6 4.5E-15 9.9E-20 166.0 15.1 187 34-243 216-402 (438)
23 COG3448 CBS-domain-containing 99.6 2.3E-14 5.1E-19 142.7 16.9 135 532-717 242-376 (382)
24 COG2524 Predicted transcriptio 99.6 6.2E-15 1.3E-19 144.6 11.6 123 532-713 169-291 (294)
25 cd00400 Voltage_gated_ClC CLC 99.6 8E-14 1.7E-18 153.7 17.1 176 286-507 1-186 (383)
26 PRK11543 gutQ D-arabinose 5-ph 99.5 5E-14 1.1E-18 151.7 13.6 147 508-711 164-318 (321)
27 PRK01610 putative voltage-gate 99.5 1.3E-13 2.9E-18 152.6 15.8 183 34-244 220-403 (418)
28 PRK10892 D-arabinose 5-phospha 99.5 9.5E-14 2.1E-18 149.8 13.9 149 508-711 169-323 (326)
29 cd01031 EriC ClC chloride chan 99.5 2.3E-13 5E-18 150.8 16.4 177 285-507 1-187 (402)
30 cd03682 ClC_sycA_like ClC sycA 99.5 4.1E-13 8.8E-18 147.3 17.4 170 34-240 199-369 (378)
31 COG3620 Predicted transcriptio 99.5 1E-13 2.3E-18 126.2 10.4 123 533-714 63-185 (187)
32 cd04641 CBS_pair_28 The CBS do 99.4 5.1E-12 1.1E-16 115.2 12.7 118 546-710 2-119 (120)
33 cd04619 CBS_pair_6 The CBS dom 99.4 5.2E-12 1.1E-16 114.1 12.1 112 546-710 2-113 (114)
34 cd04603 CBS_pair_KefB_assoc Th 99.4 4.9E-12 1.1E-16 113.7 11.8 109 546-710 2-110 (111)
35 TIGR03520 GldE gliding motilit 99.3 5.2E-12 1.1E-16 139.5 12.9 129 531-717 187-315 (408)
36 COG4109 Predicted transcriptio 99.3 2.6E-12 5.7E-17 131.3 9.6 134 508-715 175-308 (432)
37 PRK07807 inosine 5-monophospha 99.3 3.3E-12 7.2E-17 142.5 11.1 145 509-715 58-207 (479)
38 PRK15094 magnesium/cobalt effl 99.3 8.6E-12 1.9E-16 131.5 12.4 130 532-717 64-193 (292)
39 cd04618 CBS_pair_5 The CBS dom 99.3 1.3E-11 2.8E-16 108.7 11.1 95 546-710 2-97 (98)
40 cd04593 CBS_pair_EriC_assoc_ba 99.3 2.2E-11 4.7E-16 110.0 11.8 113 546-710 2-114 (115)
41 cd04600 CBS_pair_HPP_assoc Thi 99.3 2.2E-11 4.7E-16 111.4 11.5 121 546-710 3-123 (124)
42 cd04617 CBS_pair_4 The CBS dom 99.3 2.7E-11 5.9E-16 110.1 11.7 111 546-710 2-117 (118)
43 cd04639 CBS_pair_26 The CBS do 99.3 3.1E-11 6.7E-16 108.1 11.6 109 546-710 2-110 (111)
44 TIGR01137 cysta_beta cystathio 99.3 2.3E-11 4.9E-16 137.5 13.1 152 502-712 301-453 (454)
45 cd04630 CBS_pair_17 The CBS do 99.3 3.8E-11 8.2E-16 108.3 11.9 112 546-710 2-113 (114)
46 cd04605 CBS_pair_MET2_assoc Th 99.3 4.9E-11 1.1E-15 106.6 12.5 107 546-710 3-109 (110)
47 PRK07107 inosine 5-monophospha 99.3 1.8E-11 3.9E-16 137.4 11.5 150 508-712 64-219 (502)
48 cd03685 ClC_6_like ClC-6-like 99.3 3.6E-11 7.7E-16 135.2 13.9 187 275-505 29-241 (466)
49 cd04596 CBS_pair_DRTGG_assoc T 99.3 3E-11 6.4E-16 107.9 10.5 105 546-710 3-107 (108)
50 cd04623 CBS_pair_10 The CBS do 99.3 5.1E-11 1.1E-15 106.8 12.0 111 546-710 2-112 (113)
51 cd04629 CBS_pair_16 The CBS do 99.3 3.4E-11 7.3E-16 108.3 10.7 112 546-710 2-113 (114)
52 cd04607 CBS_pair_NTP_transfera 99.3 5.4E-11 1.2E-15 107.0 11.9 110 546-710 3-112 (113)
53 cd04624 CBS_pair_11 The CBS do 99.3 6.2E-11 1.3E-15 106.3 12.0 110 546-710 2-111 (112)
54 PF00654 Voltage_CLC: Voltage 99.2 8.3E-11 1.8E-15 128.2 15.3 186 34-243 163-354 (355)
55 cd04801 CBS_pair_M50_like This 99.2 5.1E-11 1.1E-15 107.4 11.3 109 546-710 2-113 (114)
56 cd04614 CBS_pair_1 The CBS dom 99.2 6.7E-11 1.5E-15 103.6 11.4 94 546-710 2-95 (96)
57 cd04803 CBS_pair_15 The CBS do 99.2 6.4E-11 1.4E-15 108.0 11.5 120 546-710 2-121 (122)
58 cd04608 CBS_pair_PALP_assoc Th 99.2 2.1E-11 4.6E-16 112.2 8.3 112 546-711 3-123 (124)
59 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 9.2E-11 2E-15 104.5 12.1 106 546-710 3-108 (109)
60 cd04642 CBS_pair_29 The CBS do 99.2 9.4E-11 2E-15 107.9 12.3 124 546-710 2-125 (126)
61 cd04615 CBS_pair_2 The CBS dom 99.2 7.8E-11 1.7E-15 105.8 11.4 110 547-710 3-112 (113)
62 COG0038 EriC Chloride channel 99.2 1.7E-10 3.6E-15 128.7 16.4 183 34-244 234-417 (443)
63 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 8E-11 1.7E-15 105.8 11.2 111 546-710 3-113 (114)
64 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 9.8E-11 2.1E-15 103.9 11.6 104 546-710 2-105 (106)
65 cd04586 CBS_pair_BON_assoc Thi 99.2 5.8E-11 1.3E-15 110.7 10.6 132 546-710 3-134 (135)
66 cd04626 CBS_pair_13 The CBS do 99.2 8.9E-11 1.9E-15 105.2 11.4 109 546-710 2-110 (111)
67 cd04627 CBS_pair_14 The CBS do 99.2 1.5E-10 3.1E-15 106.1 12.7 120 546-709 2-121 (123)
68 cd04621 CBS_pair_8 The CBS dom 99.2 9.4E-11 2E-15 109.6 11.6 133 546-710 2-134 (135)
69 cd04595 CBS_pair_DHH_polyA_Pol 99.2 1.4E-10 3E-15 103.7 12.1 107 546-710 3-109 (110)
70 cd04643 CBS_pair_30 The CBS do 99.2 1.2E-10 2.6E-15 105.1 11.3 114 546-710 2-115 (116)
71 cd04588 CBS_pair_CAP-ED_DUF294 99.2 1.9E-10 4.1E-15 102.8 12.3 108 546-710 2-109 (110)
72 cd04636 CBS_pair_23 The CBS do 99.2 1.2E-10 2.6E-15 108.1 11.3 130 546-710 2-131 (132)
73 cd04587 CBS_pair_CAP-ED_DUF294 99.2 1.5E-10 3.2E-15 104.0 11.5 111 546-710 2-112 (113)
74 cd04620 CBS_pair_7 The CBS dom 99.2 1.5E-10 3.3E-15 104.4 11.6 110 546-710 2-114 (115)
75 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 1.7E-10 3.7E-15 103.5 11.7 112 546-710 2-113 (114)
76 cd04622 CBS_pair_9 The CBS dom 99.2 2.1E-10 4.6E-15 102.9 12.2 111 546-710 2-112 (113)
77 cd04800 CBS_pair_CAP-ED_DUF294 99.2 1.8E-10 3.8E-15 103.2 11.6 109 546-710 2-110 (111)
78 cd04635 CBS_pair_22 The CBS do 99.2 1.2E-10 2.7E-15 106.1 10.7 120 546-710 2-121 (122)
79 cd04632 CBS_pair_19 The CBS do 99.2 2E-10 4.3E-15 105.9 12.0 126 546-710 2-127 (128)
80 cd04625 CBS_pair_12 The CBS do 99.2 2.5E-10 5.5E-15 102.3 12.2 110 546-710 2-111 (112)
81 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 2.5E-10 5.3E-15 102.0 11.9 109 546-710 2-110 (111)
82 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 2.8E-10 6.1E-15 101.7 12.2 109 546-710 2-110 (111)
83 PRK03655 putative ion channel 99.2 5E-10 1.1E-14 123.6 16.6 171 34-241 222-396 (414)
84 TIGR00400 mgtE Mg2+ transporte 99.2 6.8E-11 1.5E-15 132.6 9.9 124 533-718 129-257 (449)
85 cd04589 CBS_pair_CAP-ED_DUF294 99.2 2.7E-10 5.9E-15 102.0 11.8 109 546-710 2-110 (111)
86 cd04631 CBS_pair_18 The CBS do 99.2 2.5E-10 5.4E-15 104.5 11.7 123 546-710 2-124 (125)
87 cd04602 CBS_pair_IMPDH_2 This 99.2 2.4E-10 5.3E-15 103.1 11.2 109 546-710 3-113 (114)
88 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 1.5E-10 3.3E-15 129.2 11.7 122 531-715 84-205 (475)
89 PLN02274 inosine-5'-monophosph 99.2 1.9E-10 4.2E-15 129.5 12.6 117 541-715 106-224 (505)
90 cd01036 ClC_euk Chloride chann 99.2 2.4E-10 5.1E-15 127.0 13.1 100 408-507 88-202 (416)
91 cd04802 CBS_pair_3 The CBS dom 99.1 4.4E-10 9.5E-15 100.8 12.3 110 546-710 2-111 (112)
92 cd03683 ClC_1_like ClC-1-like 99.1 3E-10 6.6E-15 126.5 13.7 183 280-506 3-202 (426)
93 cd04640 CBS_pair_27 The CBS do 99.1 1.8E-10 3.8E-15 106.1 9.8 117 546-710 2-125 (126)
94 PRK14869 putative manganese-de 99.1 2.1E-10 4.6E-15 132.4 12.7 162 535-714 68-305 (546)
95 cd04590 CBS_pair_CorC_HlyC_ass 99.1 4.7E-10 1E-14 100.4 12.2 109 546-710 2-110 (111)
96 cd04599 CBS_pair_GGDEF_assoc2 99.1 2.5E-10 5.4E-15 101.0 10.3 103 546-710 2-104 (105)
97 cd04585 CBS_pair_ACT_assoc2 Th 99.1 3.8E-10 8.3E-15 102.5 11.7 120 546-710 2-121 (122)
98 TIGR01302 IMP_dehydrog inosine 99.1 2.5E-10 5.4E-15 127.8 12.5 121 535-713 80-201 (450)
99 cd04591 CBS_pair_EriC_assoc_eu 99.1 6.2E-10 1.3E-14 99.2 12.5 99 546-710 3-104 (105)
100 cd04637 CBS_pair_24 The CBS do 99.1 4.1E-10 8.8E-15 102.7 11.6 121 546-711 2-122 (122)
101 TIGR00393 kpsF KpsF/GutQ famil 99.1 2.1E-10 4.6E-15 120.3 10.6 114 534-704 154-268 (268)
102 cd03684 ClC_3_like ClC-3-like 99.1 9.4E-10 2E-14 123.1 16.0 189 34-244 206-426 (445)
103 PRK11573 hypothetical protein; 99.1 7E-10 1.5E-14 122.7 14.7 134 531-718 183-316 (413)
104 cd04601 CBS_pair_IMPDH This cd 99.1 3.1E-10 6.7E-15 101.2 9.8 106 546-710 3-109 (110)
105 cd04606 CBS_pair_Mg_transporte 99.1 3.3E-10 7.2E-15 101.2 9.1 102 550-711 2-108 (109)
106 PTZ00314 inosine-5'-monophosph 99.1 3.9E-10 8.4E-15 127.0 11.7 120 536-713 97-218 (495)
107 COG0517 FOG: CBS domain [Gener 99.1 1.1E-09 2.3E-14 98.9 12.5 113 539-709 3-117 (117)
108 cd04594 CBS_pair_EriC_assoc_ar 99.1 8E-10 1.7E-14 98.0 11.3 100 548-710 4-103 (104)
109 cd04609 CBS_pair_PALP_assoc2 T 99.1 7.8E-10 1.7E-14 98.5 11.0 109 546-711 2-110 (110)
110 PRK05567 inosine 5'-monophosph 99.1 5.5E-10 1.2E-14 126.4 12.4 117 536-713 88-205 (486)
111 cd02205 CBS_pair The CBS domai 99.1 1.2E-09 2.7E-14 96.8 11.9 111 546-710 2-112 (113)
112 cd04584 CBS_pair_ACT_assoc Thi 99.1 8.7E-10 1.9E-14 100.2 11.1 119 546-710 2-120 (121)
113 cd04610 CBS_pair_ParBc_assoc T 99.1 7.8E-10 1.7E-14 98.2 10.5 104 546-710 3-106 (107)
114 cd04633 CBS_pair_20 The CBS do 99.1 9E-10 1.9E-14 100.2 11.0 119 546-710 2-120 (121)
115 COG2905 Predicted signal-trans 99.1 4.6E-10 1E-14 122.1 9.8 128 530-714 144-271 (610)
116 COG1253 TlyC Hemolysins and re 99.0 2E-09 4.3E-14 120.1 14.1 131 531-717 202-332 (429)
117 cd04638 CBS_pair_25 The CBS do 99.0 2E-09 4.4E-14 95.5 11.1 104 546-710 2-105 (106)
118 cd04598 CBS_pair_GGDEF_assoc T 99.0 2.2E-09 4.7E-14 97.3 11.1 113 546-710 2-118 (119)
119 cd04634 CBS_pair_21 The CBS do 99.0 3.2E-09 6.9E-14 100.2 11.9 136 546-710 2-142 (143)
120 COG4536 CorB Putative Mg2+ and 99.0 1.8E-09 3.8E-14 112.2 9.9 133 531-717 196-328 (423)
121 cd04592 CBS_pair_EriC_assoc_eu 98.9 8.4E-09 1.8E-13 96.2 10.8 116 546-690 2-117 (133)
122 COG2239 MgtE Mg/Co/Ni transpor 98.8 6E-09 1.3E-13 114.7 8.6 127 534-722 131-262 (451)
123 COG4535 CorC Putative Mg2+ and 98.7 3.2E-08 6.8E-13 96.6 7.5 132 532-719 64-195 (293)
124 PF00571 CBS: CBS domain CBS d 98.7 3.4E-08 7.3E-13 77.3 6.0 55 654-713 2-56 (57)
125 PF00571 CBS: CBS domain CBS d 98.5 2.2E-07 4.9E-12 72.6 6.7 56 537-605 1-56 (57)
126 KOG1764 5'-AMP-activated prote 98.5 8.4E-07 1.8E-11 96.8 11.8 127 546-718 238-364 (381)
127 KOG2550 IMP dehydrogenase/GMP 98.4 7.6E-07 1.7E-11 93.4 8.3 112 546-713 117-228 (503)
128 TIGR01186 proV glycine betaine 98.3 6.3E-06 1.4E-10 89.7 12.6 109 546-714 251-359 (363)
129 PRK10070 glycine betaine trans 98.2 9.8E-06 2.1E-10 89.3 12.1 121 535-715 274-395 (400)
130 COG3448 CBS-domain-containing 98.0 7.3E-06 1.6E-10 82.8 5.8 61 649-714 243-303 (382)
131 PRK14869 putative manganese-de 97.8 7.3E-06 1.6E-10 94.9 1.6 144 533-711 244-391 (546)
132 TIGR00400 mgtE Mg2+ transporte 97.8 2.6E-05 5.7E-10 87.7 5.3 113 535-714 195-307 (449)
133 cd04597 CBS_pair_DRTGG_assoc2 97.7 4.1E-05 8.9E-10 69.0 5.4 55 651-710 58-112 (113)
134 KOG0475 Cl- channel CLC-3 and 97.6 0.00019 4.1E-09 79.9 9.5 196 32-243 306-514 (696)
135 COG3620 Predicted transcriptio 97.6 4.4E-05 9.5E-10 70.5 3.7 61 650-716 64-124 (187)
136 COG2524 Predicted transcriptio 97.6 8E-05 1.7E-09 74.3 5.8 59 533-604 232-290 (294)
137 cd04603 CBS_pair_KefB_assoc Th 97.6 0.00011 2.5E-09 65.6 5.6 55 535-602 56-110 (111)
138 cd04597 CBS_pair_DRTGG_assoc2 97.5 0.00013 2.9E-09 65.7 5.5 54 535-601 58-111 (113)
139 cd04619 CBS_pair_6 The CBS dom 97.4 0.0002 4.4E-09 64.2 5.4 56 534-602 58-113 (114)
140 PRK05567 inosine 5'-monophosph 97.3 0.00071 1.5E-08 77.0 8.4 57 535-604 147-204 (486)
141 cd04607 CBS_pair_NTP_transfera 97.2 0.00057 1.2E-08 61.0 5.6 54 535-601 58-111 (113)
142 cd04641 CBS_pair_28 The CBS do 97.2 0.00082 1.8E-08 60.8 6.3 49 660-713 2-50 (120)
143 smart00116 CBS Domain in cysta 97.2 0.00083 1.8E-08 49.1 5.2 46 661-711 2-47 (49)
144 cd04618 CBS_pair_5 The CBS dom 97.1 0.00074 1.6E-08 59.1 5.5 47 661-712 3-50 (98)
145 cd04600 CBS_pair_HPP_assoc Thi 97.1 0.00072 1.6E-08 61.3 5.6 57 533-602 67-123 (124)
146 cd04620 CBS_pair_7 The CBS dom 97.1 0.00077 1.7E-08 60.3 5.6 56 534-602 57-114 (115)
147 KOG0474 Cl- channel CLC-7 and 97.1 0.0011 2.3E-08 73.9 7.3 80 408-487 189-280 (762)
148 cd04585 CBS_pair_ACT_assoc2 Th 97.1 0.00092 2E-08 60.1 5.9 57 533-602 65-121 (122)
149 cd04596 CBS_pair_DRTGG_assoc T 97.1 0.00094 2E-08 59.1 5.7 56 534-602 52-107 (108)
150 cd04592 CBS_pair_EriC_assoc_eu 97.1 0.0012 2.6E-08 61.3 6.6 50 660-714 2-51 (133)
151 cd04606 CBS_pair_Mg_transporte 97.1 0.00088 1.9E-08 59.4 5.4 57 534-603 52-108 (109)
152 cd04625 CBS_pair_12 The CBS do 97.1 0.0011 2.4E-08 58.8 5.9 54 535-602 58-111 (112)
153 cd04610 CBS_pair_ParBc_assoc T 97.0 0.0012 2.5E-08 58.1 5.9 55 535-602 52-106 (107)
154 cd04627 CBS_pair_14 The CBS do 97.0 0.0011 2.5E-08 60.1 5.9 51 538-601 71-121 (123)
155 cd04614 CBS_pair_1 The CBS dom 97.0 0.0015 3.2E-08 56.9 6.1 47 660-711 2-48 (96)
156 cd04630 CBS_pair_17 The CBS do 97.0 0.0012 2.7E-08 58.9 5.8 55 534-602 59-113 (114)
157 PRK07107 inosine 5-monophospha 97.0 0.0013 2.9E-08 74.5 6.8 59 534-603 160-218 (502)
158 PRK10892 D-arabinose 5-phospha 97.0 0.0011 2.3E-08 71.7 5.8 60 649-713 200-261 (326)
159 cd04615 CBS_pair_2 The CBS dom 97.0 0.0016 3.4E-08 58.0 5.9 57 533-602 56-112 (113)
160 cd04604 CBS_pair_KpsF_GutQ_ass 97.0 0.0014 3E-08 58.3 5.6 55 535-602 59-113 (114)
161 cd04587 CBS_pair_CAP-ED_DUF294 96.9 0.0012 2.6E-08 58.6 5.2 55 535-602 58-112 (113)
162 cd04803 CBS_pair_15 The CBS do 96.9 0.0018 3.8E-08 58.5 6.0 57 533-602 65-121 (122)
163 cd04608 CBS_pair_PALP_assoc Th 96.9 0.0027 5.8E-08 58.1 7.1 51 659-714 2-52 (124)
164 cd04595 CBS_pair_DHH_polyA_Pol 96.9 0.0018 4E-08 57.3 5.8 56 533-602 54-109 (110)
165 KOG1764 5'-AMP-activated prote 96.9 0.0058 1.2E-07 67.0 10.7 131 546-720 163-293 (381)
166 cd04582 CBS_pair_ABC_OpuCA_ass 96.9 0.002 4.3E-08 56.6 5.9 54 536-602 52-105 (106)
167 cd04639 CBS_pair_26 The CBS do 96.9 0.0016 3.4E-08 57.7 5.3 54 536-602 57-110 (111)
168 cd04611 CBS_pair_PAS_GGDEF_DUF 96.9 0.0019 4.1E-08 57.1 5.8 57 533-602 54-110 (111)
169 cd04801 CBS_pair_M50_like This 96.9 0.0012 2.6E-08 58.9 4.5 57 534-601 56-112 (114)
170 PRK11543 gutQ D-arabinose 5-ph 96.9 0.0013 2.7E-08 71.0 5.4 59 650-713 196-256 (321)
171 cd04583 CBS_pair_ABC_OpuCA_ass 96.9 0.0019 4.1E-08 56.9 5.6 55 535-602 54-108 (109)
172 cd04635 CBS_pair_22 The CBS do 96.9 0.0018 4E-08 58.4 5.6 57 533-602 65-121 (122)
173 cd04621 CBS_pair_8 The CBS dom 96.9 0.0022 4.7E-08 59.7 6.2 56 533-602 79-134 (135)
174 cd04613 CBS_pair_SpoIVFB_EriC_ 96.8 0.0019 4.1E-08 57.3 5.5 56 534-602 57-113 (114)
175 cd04602 CBS_pair_IMPDH_2 This 96.8 0.0022 4.8E-08 57.3 5.8 55 535-602 57-113 (114)
176 cd04601 CBS_pair_IMPDH This cd 96.8 0.002 4.3E-08 56.9 5.4 56 534-602 53-109 (110)
177 cd04631 CBS_pair_18 The CBS do 96.8 0.0021 4.5E-08 58.3 5.7 56 534-602 69-124 (125)
178 smart00116 CBS Domain in cysta 96.8 0.0033 7.1E-08 45.8 5.8 47 547-604 2-48 (49)
179 cd04802 CBS_pair_3 The CBS dom 96.8 0.0023 5E-08 56.7 5.8 55 534-602 57-111 (112)
180 cd04586 CBS_pair_BON_assoc Thi 96.8 0.002 4.4E-08 59.5 5.4 55 534-602 80-134 (135)
181 cd04605 CBS_pair_MET2_assoc Th 96.8 0.0034 7.3E-08 55.5 6.6 50 659-713 2-51 (110)
182 cd04622 CBS_pair_9 The CBS dom 96.8 0.0023 4.9E-08 56.8 5.5 55 535-602 58-112 (113)
183 cd04623 CBS_pair_10 The CBS do 96.8 0.0029 6.2E-08 56.1 6.0 55 534-602 58-112 (113)
184 cd04588 CBS_pair_CAP-ED_DUF294 96.8 0.0025 5.5E-08 56.3 5.6 55 535-602 55-109 (110)
185 cd04612 CBS_pair_SpoIVFB_EriC_ 96.7 0.003 6.6E-08 55.8 5.9 55 535-602 56-110 (111)
186 cd04589 CBS_pair_CAP-ED_DUF294 96.7 0.0029 6.3E-08 56.1 5.7 55 534-602 56-110 (111)
187 cd04624 CBS_pair_11 The CBS do 96.7 0.0039 8.4E-08 55.3 6.5 49 660-713 2-50 (112)
188 cd04629 CBS_pair_16 The CBS do 96.7 0.0027 5.8E-08 56.5 5.5 55 534-602 59-113 (114)
189 cd04800 CBS_pair_CAP-ED_DUF294 96.7 0.003 6.4E-08 55.9 5.7 55 534-602 56-110 (111)
190 TIGR00393 kpsF KpsF/GutQ famil 96.7 0.0024 5.2E-08 66.9 5.8 58 650-712 154-212 (268)
191 cd04642 CBS_pair_29 The CBS do 96.7 0.003 6.4E-08 57.7 5.7 51 539-602 75-125 (126)
192 PRK07807 inosine 5-monophospha 96.7 0.003 6.5E-08 71.3 6.8 59 535-606 148-206 (479)
193 PLN02274 inosine-5'-monophosph 96.7 0.0033 7.1E-08 71.5 6.9 62 534-606 162-223 (505)
194 cd04633 CBS_pair_20 The CBS do 96.7 0.003 6.5E-08 56.9 5.5 57 532-602 64-120 (121)
195 cd04617 CBS_pair_4 The CBS dom 96.6 0.0046 1E-07 55.6 6.6 49 660-713 2-50 (118)
196 TIGR01137 cysta_beta cystathio 96.6 0.0029 6.4E-08 71.6 6.4 60 649-713 333-392 (454)
197 cd04593 CBS_pair_EriC_assoc_ba 96.6 0.0049 1.1E-07 55.1 6.6 49 660-713 2-50 (115)
198 cd04643 CBS_pair_30 The CBS do 96.6 0.0043 9.2E-08 55.3 6.2 48 661-713 3-50 (116)
199 cd04636 CBS_pair_23 The CBS do 96.6 0.0039 8.5E-08 57.3 6.0 55 534-602 77-131 (132)
200 cd04626 CBS_pair_13 The CBS do 96.6 0.0035 7.6E-08 55.5 5.5 53 535-601 57-109 (111)
201 TIGR01303 IMP_DH_rel_1 IMP deh 96.6 0.0037 8E-08 70.5 6.8 59 535-606 146-204 (475)
202 cd04594 CBS_pair_EriC_assoc_ar 96.6 0.0037 8E-08 54.9 5.4 53 536-602 51-103 (104)
203 COG0517 FOG: CBS domain [Gener 96.6 0.0039 8.6E-08 55.6 5.7 52 536-600 63-116 (117)
204 cd04599 CBS_pair_GGDEF_assoc2 96.6 0.0041 8.8E-08 54.4 5.7 53 535-601 51-103 (105)
205 cd04637 CBS_pair_24 The CBS do 96.5 0.0042 9.2E-08 56.0 5.6 55 535-602 67-121 (122)
206 cd04584 CBS_pair_ACT_assoc Thi 96.5 0.0049 1.1E-07 55.4 5.7 56 533-602 65-120 (121)
207 cd04632 CBS_pair_19 The CBS do 96.5 0.0068 1.5E-07 55.3 6.6 47 661-712 3-49 (128)
208 COG4109 Predicted transcriptio 96.4 0.0068 1.5E-07 63.4 6.4 63 531-606 245-307 (432)
209 cd04590 CBS_pair_CorC_HlyC_ass 96.4 0.0076 1.6E-07 53.3 6.1 49 661-714 3-52 (111)
210 cd04640 CBS_pair_27 The CBS do 96.3 0.0076 1.6E-07 55.0 6.1 45 661-710 3-47 (126)
211 PRK15094 magnesium/cobalt effl 96.3 0.0079 1.7E-07 63.8 6.9 57 651-712 67-126 (292)
212 cd02205 CBS_pair The CBS domai 96.3 0.011 2.3E-07 51.7 6.8 50 661-715 3-52 (113)
213 cd04591 CBS_pair_EriC_assoc_eu 96.3 0.0075 1.6E-07 53.2 5.5 49 540-602 56-104 (105)
214 cd04598 CBS_pair_GGDEF_assoc T 96.1 0.01 2.2E-07 53.2 5.8 56 534-602 60-118 (119)
215 TIGR03520 GldE gliding motilit 96.1 0.0073 1.6E-07 67.2 5.7 59 651-713 191-251 (408)
216 cd04609 CBS_pair_PALP_assoc2 T 96.1 0.012 2.5E-07 51.8 5.8 48 661-714 3-50 (110)
217 PTZ00314 inosine-5'-monophosph 96.1 0.0077 1.7E-07 68.4 5.7 60 534-604 158-217 (495)
218 TIGR01302 IMP_dehydrog inosine 96.1 0.011 2.3E-07 66.7 6.8 55 651-710 80-137 (450)
219 COG2239 MgtE Mg/Co/Ni transpor 96.0 0.0084 1.8E-07 66.7 5.3 60 534-606 195-254 (451)
220 COG2905 Predicted signal-trans 96.0 0.0082 1.8E-07 66.7 4.9 63 651-718 149-211 (610)
221 cd04638 CBS_pair_25 The CBS do 95.8 0.017 3.6E-07 50.7 5.5 53 536-602 53-105 (106)
222 cd04634 CBS_pair_21 The CBS do 95.8 0.017 3.7E-07 54.0 5.9 54 534-601 88-141 (143)
223 COG4175 ProV ABC-type proline/ 95.8 0.016 3.6E-07 60.3 5.9 113 532-714 271-384 (386)
224 KOG0476 Cl- channel CLC-2 and 95.6 0.041 8.8E-07 63.0 8.8 67 649-718 586-652 (931)
225 TIGR03415 ABC_choXWV_ATP choli 95.6 0.034 7.3E-07 61.2 8.0 50 658-714 332-381 (382)
226 TIGR01186 proV glycine betaine 94.8 0.053 1.1E-06 59.3 6.4 57 536-606 303-359 (363)
227 PRK10070 glycine betaine trans 93.2 0.17 3.6E-06 56.2 6.4 58 536-607 338-395 (400)
228 PRK11573 hypothetical protein; 92.9 0.19 4.1E-06 56.0 6.5 58 651-712 187-246 (413)
229 COG4535 CorC Putative Mg2+ and 92.2 0.14 3.1E-06 51.0 3.7 63 651-717 67-131 (293)
230 COG1253 TlyC Hemolysins and re 91.8 0.28 6.1E-06 55.1 6.0 62 651-716 206-269 (429)
231 KOG2550 IMP dehydrogenase/GMP 89.9 0.34 7.5E-06 52.0 4.2 56 535-603 171-226 (503)
232 KOG2118 Predicted membrane pro 88.2 0.73 1.6E-05 52.4 5.5 128 531-713 200-328 (498)
233 COG1125 OpuBA ABC-type proline 84.1 5.7 0.00012 40.8 8.8 42 665-711 267-308 (309)
234 TIGR03415 ABC_choXWV_ATP choli 83.5 2.1 4.5E-05 47.2 6.0 54 536-605 327-380 (382)
235 COG4536 CorB Putative Mg2+ and 70.3 22 0.00047 38.5 8.7 50 546-606 276-325 (423)
236 COG4175 ProV ABC-type proline/ 66.5 10 0.00022 40.2 5.3 53 540-606 332-384 (386)
237 COG1125 OpuBA ABC-type proline 58.5 14 0.0003 38.1 4.5 61 531-602 245-307 (309)
238 COG5336 Uncharacterized protei 48.3 56 0.0012 28.9 5.9 16 277-292 75-90 (116)
239 PRK09765 PTS system 2-O-a-mann 43.4 6.3E+02 0.014 30.0 18.2 241 157-514 350-628 (631)
240 TIGR02865 spore_II_E stage II 41.3 1.6E+02 0.0034 35.8 10.5 29 276-304 112-140 (764)
241 PF01102 Glycophorin_A: Glycop 38.8 43 0.00093 30.5 4.0 17 280-296 66-82 (122)
242 COG2981 CysZ Uncharacterized p 29.7 6.2E+02 0.014 25.9 11.2 37 276-312 27-63 (250)
243 PRK11388 DNA-binding transcrip 25.8 1.4E+02 0.003 35.4 6.6 146 509-704 14-162 (638)
244 PF10518 TAT_signal: TAT (twin 25.2 39 0.00085 21.7 1.0 23 188-210 3-25 (26)
245 COG2216 KdpB High-affinity K+ 24.9 64 0.0014 36.5 3.1 48 668-721 413-460 (681)
246 KOG4112 Signal peptidase subun 22.3 1.2E+02 0.0026 26.0 3.6 16 432-447 32-47 (101)
No 1
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-108 Score=877.56 Aligned_cols=697 Identities=59% Similarity=0.990 Sum_probs=648.9
Q ss_pred CcccccchhhhHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----chhhH
Q 004817 6 FCRINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDR-----YLQGF 80 (729)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~ 80 (729)
.||..||+.|+++||.|.+.+.++|...||..++++|+++|+++.+.+..++.+..+++......+.+.. ++..+
T Consensus 59 DYei~ENdlf~e~~r~~~k~~~~~y~~~kW~~~~lIGi~TgLva~fidl~Ven~ag~Kf~~v~~~v~~~~s~~g~~~~~~ 138 (762)
T KOG0474|consen 59 DYEICENDLFLEDWRTRDKKKGRRYEAVKWMVCFLIGICTGLVALFIDLFVENFAGLKFGVVQNSVEECRSQKGCLALSL 138 (762)
T ss_pred chhhhcchHHHHHHHhhcccceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHhhhccccHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999998887755554443 67778
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 004817 81 LYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSC 160 (729)
Q Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ 160 (729)
+.|....+++.++++.++.+++|.+.||||||||.|+||++.++..++||++.|+++++.++++|+-+|+|||++|.|++
T Consensus 139 l~~~g~Nl~lv~~as~lv~~iaP~AAGSGIPevK~YLNGV~iP~ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~ 218 (762)
T KOG0474|consen 139 LVLLGFNLVLVFLASVLVAYIAPVAAGSGIPEVKCYLNGVKIPGIVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSV 218 (762)
T ss_pred HHHHHHhHHHHHHHHHHHHeechhccCCCCchhhhhhcCccCcceeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 004817 161 IASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVV 240 (729)
Q Consensus 161 ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~ 240 (729)
+|+.++|+-+..+++.|||+|+|++++|||.++.||+|||+||+|+||++|++|++|+.++.|+...+|+.|+++.++++
T Consensus 219 Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f 298 (762)
T KOG0474|consen 219 VAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAF 298 (762)
T ss_pred HHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCccccCCCcceEEeeccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHH
Q 004817 241 VLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLL 320 (729)
Q Consensus 241 v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~ 320 (729)
+.+.++.++.+|+|..|+.+..+.|++.+....|+.+|+++++++|+++|++|.+|+.++.+...++.+ ..+.+..|++
T Consensus 299 ~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvl 377 (762)
T KOG0474|consen 299 VLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLLIGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVL 377 (762)
T ss_pred hHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeEeehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHH
Confidence 999889999999999999999999998766679999999999999999999999999997777766655 5566788999
Q ss_pred HHHHHHHHHhhhhhccccccccCCCCCCCCC-CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCc
Q 004817 321 LALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEF 399 (729)
Q Consensus 321 ~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~-~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~ 399 (729)
++++++++++++.|..|.+++|+++|.+..+ .||+ +.|+.|.||+++++++++++++++++|+... +++
T Consensus 378 ea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~---------f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~ef 447 (762)
T KOG0474|consen 378 EALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT---------FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-NEF 447 (762)
T ss_pred HHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc---------ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-Ccc
Confidence 9999999999999999999999999987554 5654 6899999999999999999999999999877 889
Q ss_pred chhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHhhhhhhccchhHHHHH
Q 004817 400 QPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVI 479 (729)
Q Consensus 400 ~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl 479 (729)
....|++++++.++++..|+|...|.|+|.|++.+||+.||++|.++..+..++|+.||++||||+++|++|+++|..||
T Consensus 448 ~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg~~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~VI 527 (762)
T KOG0474|consen 448 GILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVGMLLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLCVI 527 (762)
T ss_pred chhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHHHHHHHhhccCchHHHHHhHHHHhCCeEEEEeeeehH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHHHHHhhcCCchHHHHHHhcCCCCCCCCCCCcccccchhcccccCCCeeEecCcccHHHH
Q 004817 480 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQI 559 (729)
Q Consensus 480 ~~Eltg~~~~~~p~lia~~va~~v~~~~~~sly~~~l~~~G~~~~~~~~~~~l~~~~v~dvm~~~~~~~~v~~~~~v~~a 559 (729)
++|+| +-.+.+|+|++.++|..+.+.++.++||.+++.+|.|+++.++++.+++++++|+|++ ++++++.-+++..+
T Consensus 528 l~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~Le~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~I 604 (762)
T KOG0474|consen 528 LLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPFLEWEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVI 604 (762)
T ss_pred HHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCccccCCCchHhhhhhHhhhccC--CeEEEechhhHHHH
Confidence 99999 5578889999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccc
Q 004817 560 VDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEE 639 (729)
Q Consensus 560 ~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~ 639 (729)
++.++++.|++|||+|+.. .++.+++.|+|-|++++..++++++.++...+.....++..+.+|+.+...+++|
T Consensus 605 v~vLk~t~HngFPVvd~~~------~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~d 678 (762)
T KOG0474|consen 605 VDVLKSTNHNGFPVVDEPP------SNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIED 678 (762)
T ss_pred HHHHHhcCcCCCccccCCC------CccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchhhcCCHHHhhhcCCchhh
Confidence 9999999999999999852 1233789999999999999999988766555555555578899999998889999
Q ss_pred cccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhhhcCC
Q 004817 640 VAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 719 (729)
Q Consensus 640 ~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~~~~~ 719 (729)
+.+++.++++++|++++|+++|++|++++++.++..+|++.++|++.|+++ .++++|++||+|+.++...+..++
T Consensus 679 v~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~-----~~~~~gilTR~D~~~~~~l~~~~~ 753 (762)
T KOG0474|consen 679 VHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPK-----TNRVVGILTRKDLARYRILGLEPH 753 (762)
T ss_pred hhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecC-----CCceeEEEehhhhhhHHHhccccc
Confidence 999999999999999999999999999999999999999999999999998 788999999999999888888888
Q ss_pred cccccccC
Q 004817 720 LERSKSGQ 727 (729)
Q Consensus 720 ~~~~~~~~ 727 (729)
..+.+.++
T Consensus 754 v~~~~~~~ 761 (762)
T KOG0474|consen 754 VDELKMGK 761 (762)
T ss_pred cccccccc
Confidence 77766654
No 2
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=5e-75 Score=669.55 Aligned_cols=542 Identities=18% Similarity=0.247 Sum_probs=441.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHH-HH
Q 004817 36 SLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPE-IK 114 (729)
Q Consensus 36 l~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~-i~ 114 (729)
+.++++|+++|+++.+|+.++++.+++++....++...... ..|++.++++++++++++++.++..+..+++|+++ ++
T Consensus 26 ~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~ggli~~~~~~~~~~~~~~~g~~~~~~ 104 (574)
T PRK01862 26 IWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKS-LPWYVRVWLPAAGGFLAGCVLLLANRGARKGGKTDYME 104 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhc-ccHHHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHH
Confidence 47999999999999999999999999988642221111111 12233345666667777777666666555455555 66
Q ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHH
Q 004817 115 AYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLIT 194 (729)
Q Consensus 115 ~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~ 194 (729)
+.+++ .+.++++..+.|++++++++++|+|+|||||++|+|+++|++++| |++. +++++|.+++
T Consensus 105 ~~~~~---~~~~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~ 168 (574)
T PRK01862 105 AVALG---DGVVPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVA 168 (574)
T ss_pred HHHcC---CCCCChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHH
Confidence 66654 466889999999999999999999999999999999999999998 3333 5677899999
Q ss_pred hhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCccc
Q 004817 195 CGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRY 274 (729)
Q Consensus 195 ~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~ 274 (729)
||+|||+||+||||++|++|++|++.++|+.+.++++++++++++++++. ++|+++ .|+++. .+.+
T Consensus 169 ~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~-----------~~g~~~--~~~~~~-~~~~ 234 (574)
T PRK01862 169 CGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMRE-----------FAGYQP--PYEMPV-FPAV 234 (574)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH-----------HcCCCc--eeeCCC-cCcC
Confidence 99999999999999999999999999999999999999998888887775 345555 566663 4568
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCC
Q 004817 275 HVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCP 354 (729)
Q Consensus 275 ~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p 354 (729)
+..++++++++|++||++|.+|+++++++++++++++. .+.+...++|++++++.+++|++
T Consensus 235 ~~~~~~~~~~lGv~~G~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~gl~~g~l~~~~p~~--------------- 295 (574)
T PRK01862 235 TGWEVLLFVALGVLCGAAAPQFLRLLDASKNQFKRLPV----PLPVRLALGGLLVGVISVWVPEV--------------- 295 (574)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC----chhHHHHHHHHHHHHHHHHHHHH---------------
Confidence 88999999999999999999999999999888766432 23345567788888888888887
Q ss_pred CCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHH
Q 004817 355 TNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILM 434 (729)
Q Consensus 355 ~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~i 434 (729)
.|. +|+.+... +. ++..+..++.++++|+++|++|+|+|+|||.|+|++++
T Consensus 296 -~g~------------G~~~i~~~------------~~----~~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~i 346 (574)
T PRK01862 296 -WGN------------GYSVVNTI------------LH----APWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFV 346 (574)
T ss_pred -hcC------------CHHHHHHH------------Hc----CCchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHH
Confidence 232 24433322 22 23345566777889999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccC---CCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc-CCc
Q 004817 435 GSAYGRLLGMAMGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPS 510 (729)
Q Consensus 435 Ga~~G~~~g~~~~~~~---~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~-~~s 510 (729)
||++|+++|++++... ..++..|+++||+|++++++|+|+|++++++|+|++++.++|+++++++|+.+++.+ +++
T Consensus 347 Ga~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~ 426 (574)
T PRK01862 347 GAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTS 426 (574)
T ss_pred HHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999887532 234678999999999999999999999999999999999999999999999999988 899
Q ss_pred hHHHHHHhcCCCCCCCCCCCcccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCce
Q 004817 511 IYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATE 590 (729)
Q Consensus 511 ly~~~l~~~G~~~~~~~~~~~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~ 590 (729)
+|+.++++++. +.+.+.+++++++|+|++ +..+++++++++|+.+.+.+++.+.+||+|++ ++
T Consensus 427 iy~~~~~~~~~----~~~~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----------g~ 489 (574)
T PRK01862 427 MYEITLRRHQD----EAERERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----------GR 489 (574)
T ss_pred hHHHHHHhccc----cchhhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----------Ce
Confidence 99999998753 335667899999999998 88899999999999999999999999999987 89
Q ss_pred EEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCH
Q 004817 591 LHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSV 670 (729)
Q Consensus 591 lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l 670 (729)
++|+|+.+|+.+.+.+... ....+++|+|++++.++++|+++
T Consensus 490 lvGiVt~~dL~~~l~~~~~--------------------------------------~~~~~v~dim~~~~~~v~~d~~L 531 (574)
T PRK01862 490 FRGAVALKDITSDLLDKRD--------------------------------------TTDKTAADYAHTPFPLLTPDMPL 531 (574)
T ss_pred EEEEEEHHHHHHHhhcccc--------------------------------------cccchHHHhccCCCeeECCCCCH
Confidence 9999999999764422110 00123567788888899999999
Q ss_pred HHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhh
Q 004817 671 AKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 671 ~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
.+++++|.+++.+++||+|+ +++++++|+||++|+++++.+
T Consensus 532 ~~al~~m~~~~~~~lpVVd~---~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 532 GDALEHFMAFQGERLPVVES---EASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred HHHHHHHHhcCCCeeeeEeC---CCCCeEEEEEEHHHHHHHHHh
Confidence 99999999999999999987 122589999999999998765
No 3
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.4e-76 Score=629.74 Aligned_cols=624 Identities=28% Similarity=0.475 Sum_probs=482.3
Q ss_pred CCCCCCcccccchhhhHhhhhccch-----hHHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 004817 1 MSDFPFCRINENDLFKHDWRSRSKV-----QVLQYIFLKW--SL-ACLVGLLTGLIATLINLAVENIAGYKLLAVVS--- 69 (729)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~w--l~-~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~--- 69 (729)
++||.|+||++.... |.-|.|.-. ..|.....-| .. .+++|..+|..+.+.+...+| |++.+.|..
T Consensus 14 ~~df~tiDw~~e~~~-dr~r~r~~~~~~k~~~w~~~~si~~~~sg~~~IGl~ag~la~~~di~~~w--D~k~G~C~~~~~ 90 (696)
T KOG0475|consen 14 YDDFHTIDWIRELRR-DRVRHRLISKKRKESVWELLKSIIDAGSGVLLIGLAAGFLAGLADILTSW--DLKEGYCTPNFW 90 (696)
T ss_pred ccchhhhHHHHHHhc-chhhhhhhcccccchHHHHHHHHhccchhhhHhHhHHHHhhHHHHhhcch--hhccCcccchhh
Confidence 579999999987666 333332221 1111111111 12 377888888888888877776 333322210
Q ss_pred ------------------HH-----------hhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCC
Q 004817 70 ------------------FI-----------EKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGV 120 (729)
Q Consensus 70 ------------------~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~ 120 (729)
|. .++.+...|++++.+++.+++++..+++.++|.+.|+||||||.+++|.
T Consensus 91 ~n~~~CC~t~~~~~~c~~~~~w~~~~~~~~~w~~~~~~~~l~y~~~al~fa~la~~lv~~~AP~A~gSGIpEIK~ilSGf 170 (696)
T KOG0475|consen 91 LNHEFCCSTFTEDDVCKEWFFWCEHLGLDFSWTGHYIVSYLIYVLWALLFAFLAVSLVKVVAPYACGSGIPEIKTILSGF 170 (696)
T ss_pred hhhhhheeeeecCccchhhhhhHHHhccccCCCCcchHHHHHHHHHHHHHHHHHHHHhhheehhhhcCCCccceeeeccc
Confidence 00 0122345788999999999999999999999999999999999999999
Q ss_pred CCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccc
Q 004817 121 DTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSG 200 (729)
Q Consensus 121 ~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAg 200 (729)
..++++..++++.|.++..++++||+|+|||||+||++.++|+.+.+. | .++-.++..+|+.+.+++|||
T Consensus 171 ~~~~~lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~----f------~~~~~~e~~~reilsAaaAaG 240 (696)
T KOG0475|consen 171 IIRGFLGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKI----F------PKYRLNEAKKREILSAAAAAG 240 (696)
T ss_pred hhhhhhhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhh----h------hhhccchhHHHHHHHHHhhcc
Confidence 888899999999999999999999999999999999999999999972 1 123347788999999999999
Q ss_pred hhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCcccchhhHH
Q 004817 201 VCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDII 280 (729)
Q Consensus 201 iaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~ 280 (729)
+|++||||+||++|++|++..+|..+.+|+.++++.+|+.+.+.+ ..|+++...+|.+.+ +.+|++.|++
T Consensus 241 vavaFgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i---------~pf~~~~~vLf~V~Y-~~~W~~~EL~ 310 (696)
T KOG0475|consen 241 VAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSI---------NPFGNSRLVLFYVDY-DRPWSLFELL 310 (696)
T ss_pred chhhcCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeee---------cccCCCceEEEEEec-cCCcccccch
Confidence 999999999999999999998899999999999999999888864 578888878888875 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCC-CCCCCCCCCCCC
Q 004817 281 PVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDP-SFPETCPTNGRS 359 (729)
Q Consensus 281 ~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~-~~~~~~p~~g~~ 359 (729)
+|+++|++||+.|.+|.|++.++.++++.. ....++++.+..++++++++++++|+++-....-. .+.++|+-.-.
T Consensus 311 pFi~LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~~e~i~~Lf~~C~~~~s- 387 (696)
T KOG0475|consen 311 PFILLGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNMSELITILFNKCSPSSS- 387 (696)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhHHHHHHHHHhhcCCccc-
Confidence 999999999999999999999988887654 23456788999999999999999999831110000 00111110000
Q ss_pred CCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHH
Q 004817 360 GNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYG 439 (729)
Q Consensus 360 g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G 439 (729)
.. +. + ..--...+.|++.+++|+++|++|+|+++|+|+|.||+++||+.|
T Consensus 388 -------------~~------------l~----~-~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aG 437 (696)
T KOG0475|consen 388 -------------TS------------LP----E-TTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAG 437 (696)
T ss_pred -------------cc------------Cc----c-cchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHH
Confidence 00 00 0 000012456777789999999999999999999999999999999
Q ss_pred HHHHHHhhcc-----------CCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc-
Q 004817 440 RLLGMAMGSY-----------TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF- 507 (729)
Q Consensus 440 ~~~g~~~~~~-----------~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~- 507 (729)
+++|....+. ..+.|+.|+++||||.++|++|.|+|.+|+++|+||++.+++|+|+|+.+|..+++.+
T Consensus 438 r~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI~d~~g 517 (696)
T KOG0475|consen 438 RAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWIGDGLG 517 (696)
T ss_pred HHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHHHhccc
Confidence 9999765541 3467999999999999999999999999999999999999999999999999999988
Q ss_pred CCchHHHHHHhcCCCCCCCCCCCcccccchhcccccC---CCeeEecCc-ccHHHHHHHHhcCCCCeeeeecCCCCCCCC
Q 004817 508 NPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK---PPVITLSGI-EKVSQIVDVLRNTTHNGFPVLDEGVVPPSG 583 (729)
Q Consensus 508 ~~sly~~~l~~~G~~~~~~~~~~~l~~~~v~dvm~~~---~~~~~v~~~-~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~ 583 (729)
...+||++++.+|+|++++..+.. +.-..++|.+. +...+++.+ ++++|...++++++++++||+-++
T Consensus 518 k~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~------ 589 (696)
T KOG0475|consen 518 KTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE------ 589 (696)
T ss_pred cchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc------
Confidence 667999999999999997765544 33344555442 135555554 899999999999999999998654
Q ss_pred CCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCce
Q 004817 584 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT 663 (729)
Q Consensus 584 ~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~ 663 (729)
++.+++|.|.++|+...+......++-..+. + ..+.++ ......+....++.+++|+.+|++
T Consensus 590 ---~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~------~---~~f~~~------~~~~~~~~~~~~~lk~il~~tp~t 651 (696)
T KOG0475|consen 590 ---DSQRLVGFVLRRNLFLAILNARKIQSFIVTT------S---IYFNDP------SPSAVAGIPSRLDLKDILDMTPFT 651 (696)
T ss_pred ---ccceeEEEEchHHHHHHHhhhccccccceec------c---cccCCC------CccccCCCCCCcCceeeccCCccc
Confidence 4689999999999987765422111100000 0 011111 000011223457899999999999
Q ss_pred ecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhh
Q 004817 664 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 712 (729)
Q Consensus 664 v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~ 712 (729)
+.+++|.+.++++|++.++++..|.++ |++.|+||++|+++..
T Consensus 652 v~d~tp~~~v~~~F~~lg~~~~~v~~~------G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 652 VTDLTPMETVVDLFRKLGLRQILVTKN------GILLGIITKKDCLRHT 694 (696)
T ss_pred ccccCcHHHHHHHHHhhCceEEEEccC------CeeEeeeehHHHHHhh
Confidence 999999999999999999999999876 9999999999998753
No 4
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-74 Score=621.62 Aligned_cols=636 Identities=26% Similarity=0.467 Sum_probs=483.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCC
Q 004817 26 QVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTA 105 (729)
Q Consensus 26 ~~~~~~~~~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~ 105 (729)
..++...+.|++.+++|++++++++.+|++++.+++...+... .++..+....|+.|+.+++++..+++.++++++|++
T Consensus 87 ~i~r~l~eDW~flalLG~imAlvS~~mD~ai~~~~~a~~~ly~-~~~~~~~yl~yl~Wv~y~v~Li~fSA~f~h~iapQA 165 (931)
T KOG0476|consen 87 NIVRKLGEDWFFLALLGVIMALVSIGMDMAIESLQHAQVWLYR-ELGSSHSYLAYLSWVGYPVGLVLFSAGFCHYIAPQA 165 (931)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHHHHHHHHHheecccc
Confidence 3455568899999999999999999999999999888766543 344444556787888899999999999999999999
Q ss_pred CCCCHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCC
Q 004817 106 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNN 185 (729)
Q Consensus 106 ~g~Gi~~i~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~ 185 (729)
.||||||+|.++.|+.+++|++.|+++.|.++..+++|||.++|+|||++|+++.+++.++|..++.+ -..++|
T Consensus 166 vGSGIPEmKtIlrGv~LkeYLt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~a~~~------~g~~en 239 (931)
T KOG0476|consen 166 VGSGIPEMKTILRGVILKEYLTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVTACQF------GGFFEN 239 (931)
T ss_pred ccCCChhHHHHHHhhhHHhhhhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHHHhhc------cccccC
Confidence 99999999999999999999999999999999999999999999999999999999999988433222 233456
Q ss_pred hhhhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEE
Q 004817 186 DRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMF 265 (729)
Q Consensus 186 ~~~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f 265 (729)
+....+|+++|+|.|+|..|.||++|+||++|++.+||++++||+.|+++++++.+++.+..|....- ..-..+|
T Consensus 240 esR~~EmLaaaCAVGVactFsAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~-----~tItA~y 314 (931)
T KOG0476|consen 240 ESRNMEMLAAACAVGVACTFSAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAE-----VTITALY 314 (931)
T ss_pred cchHHHHHHHHhhhhheeeecCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccch-----hhhHHHH
Confidence 66677899999999999999999999999999999999999999999999999999999887754110 0011133
Q ss_pred eecc-CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhccchhhHHHHHHHHHHHhhhhhccccccc
Q 004817 266 DVSN-VPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYN---LINQKGKMHKLLLALSVSVFTSVCQYCLPFLAD 341 (729)
Q Consensus 266 ~~~~-~~~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~ 341 (729)
+.++ .+.+|+..|+|.|+++|++||++|.+|+++.+++.-+.+ ..+....+++++.+++++++++.+.|. |.+++
T Consensus 315 qT~F~~d~~F~~~ELp~FallGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssltfP-~GlG~ 393 (931)
T KOG0476|consen 315 QTSFRPDFPFDVQELPFFALLGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSLTFP-PGLGQ 393 (931)
T ss_pred hccCCCCCCCCHHHhHHHHHHHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhheecC-Ccccc
Confidence 3322 345899999999999999999999999998776543221 111122346788888888888877652 12210
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCc------hhHH--HhhhcCCCCC--Cc-chhHHHHHHHH
Q 004817 342 CKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTN------DDAV--RNIFSSNTPT--EF-QPSSILIFFIL 410 (729)
Q Consensus 342 ~~~~~~~~~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~------~~~i--~~~~~~~~~~--~~-~~~~ll~~~~l 410 (729)
.+ .|..+ .-+.+.+++.|.. ++.. ......|... .. .+..|+++.++
T Consensus 394 --f~-------------aG~l~-------f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~ 451 (931)
T KOG0476|consen 394 --FL-------------AGRLS-------FRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLM 451 (931)
T ss_pred --cc-------------ccccc-------HHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHH
Confidence 00 00000 0112222222111 0000 0111112111 22 34557888899
Q ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcc-----------CCCccHHHHHHHHHhhhhhhccchhHHHHH
Q 004817 411 YCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-----------TNIDQGLYAVLGAASLMAGSMRMTVSLCVI 479 (729)
Q Consensus 411 k~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~~g~~~~~~-----------~~~~~~~~a~vG~aa~~a~~~~~pls~~vl 479 (729)
|++++++|....+|.|.|+|.++|||++||++|+.+... ..+.|+.||++|||||. |+..+.+|.+||
T Consensus 452 ~F~~siia~TipvPsG~FmPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfs-GaVTHTvSvAVI 530 (931)
T KOG0476|consen 452 YFWMSIIATTIPVPSGVFMPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFS-GAVTHTVSVAVI 530 (931)
T ss_pred HHHHHHHHhccccCccceeeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhc-cceeeeeeEEEE
Confidence 999999999999999999999999999999999866541 24679999999999985 555579999999
Q ss_pred HHHHhCCcchHHHHHHHHHHHHHHHhhcCCchHHHHHHhcCCCCCCCCCCCc--ccccchhcccccCCCeeEecCcccHH
Q 004817 480 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPW--MRTLTVGELIDAKPPVITLSGIEKVS 557 (729)
Q Consensus 480 ~~Eltg~~~~~~p~lia~~va~~v~~~~~~sly~~~l~~~G~~~~~~~~~~~--l~~~~v~dvm~~~~~~~~v~~~~~v~ 557 (729)
++|+||+...++|+|+|+++|++++.++.+|+||..++.+++||+++.+... ...+.|+|+|.+ ++.++..++|.+
T Consensus 531 ifElTGQl~hiLPVmIAVllaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~--dv~yI~k~~Ty~ 608 (931)
T KOG0476|consen 531 IFELTGQLCHILPVMIAVLLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVT--DVKYITKDTTYR 608 (931)
T ss_pred EEeeccchHHHHHHHHHHHHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeeccc--cceeeeccCcHH
Confidence 9999999999999999999999999999999999999999999999986643 568899999999 999999999999
Q ss_pred HHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc------c-cch-------------
Q 004817 558 QIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK------R-RTE------------- 617 (729)
Q Consensus 558 ~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~------~-~~~------------- 617 (729)
|..+.++.+..+.+|+||+. ++..|+|.|.|+.|...++.+.-...+ + ++.
T Consensus 609 elre~l~~~~lR~~PlV~s~---------esmiLlGSV~R~~L~~ll~~~ig~~~r~~~a~~r~r~~~E~~~~~~~~~~~ 679 (931)
T KOG0476|consen 609 ELREALQTTTLRSFPLVESK---------ESMILLGSVARRYLTALLQRHIGPEPRLVEAQKRVRTASEIFLTIFERSKK 679 (931)
T ss_pred HHHHHHHhCccceeccccCc---------ccceeeehhHHHHHHHHHHhhcCccHhHHHHHHHhhhhhhchhhhhhhhhc
Confidence 99999988779999999984 779999999999999988763210000 0 000
Q ss_pred --hH----HHh----------------------------------hhhhhHHhhhhc-C---cc----------------
Q 004817 618 --EW----EVR----------------------------------EKFSWVELAERE-G---KI---------------- 637 (729)
Q Consensus 618 --~~----~~~----------------------------------~~~~~~dl~~~~-~---~~---------------- 637 (729)
.. ... +.++........ + +.
T Consensus 680 ee~~~r~p~~~~~~~~~~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~~~~~~~~~~p~~~~~~ 759 (931)
T KOG0476|consen 680 EEPPRRSPSRSEFFTMQRENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSLRDMESPLHGPAAEHHP 759 (931)
T ss_pred cCCCCCCccccccccccccccccccccccccCCCCchhccCccccccccccccCCccccccccccccccCCCCCcccccc
Confidence 00 000 000000000000 0 00
Q ss_pred ----------------------cc------cccChhhhhhccCcccc-ccCCCceecCCCCHHHHHHHHHHcCCcEEEEe
Q 004817 638 ----------------------EE------VAVTSEEMEMYIDLHPL-TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 688 (729)
Q Consensus 638 ----------------------~~------~~~~~~~~~~~~~v~~i-m~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVv 688 (729)
.| .++.+....+.++.++. +|+.|+.+.+.+||.+++.+|...|+++.+|.
T Consensus 760 l~~~~~r~~~~~~~~~~~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~HtLFSLLgL~~AYVT 839 (931)
T KOG0476|consen 760 LHKLLTRQTKVNNKKQSHDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVHTLFSLLGLNHAYVT 839 (931)
T ss_pred cccccccccccccccccccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHHHHHHHhccchhhhc
Confidence 00 00111223355566666 68999999999999999999999999999999
Q ss_pred eccccCCCCcEEEEEehhhhhhhhhh
Q 004817 689 PKYEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 689 d~~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
+. ||++|++..+|+.++..+
T Consensus 840 ~~------GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 840 SC------GRLVGVVALKELRKAIEN 859 (931)
T ss_pred cc------CcEEEEEEHHHHHHHHHh
Confidence 97 999999999999988776
No 5
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=100.00 E-value=2.3e-69 Score=602.82 Aligned_cols=456 Identities=59% Similarity=1.041 Sum_probs=388.5
Q ss_pred CcccccchhhhHhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHH
Q 004817 6 FCRINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTG 85 (729)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (729)
.|.|.||+.+++|||+|.+++...+...||+.++++|+++|+++.+|+..++++++++.+.+.++..++..+..|..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (466)
T cd03685 4 DYEVIENDLFREEWRKRKKKQVLQYEFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLG 83 (466)
T ss_pred CccccccHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHH
Confidence 46789999999999999988888888999999999999999999999999999999988775544444444455666777
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHh
Q 004817 86 VNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLL 165 (729)
Q Consensus 86 ~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l 165 (729)
++++++++++++++++.|++.|+|+||++++++|.+.++.+++|+++.|++++++++++|+|+|||||++|+|+++|+++
T Consensus 84 ~~~~~~li~~~l~~~~~p~a~GsGip~v~~~l~g~~~~~~l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~ 163 (466)
T cd03685 84 LNLVLVLVAALLVAYIAPTAAGSGIPEVKGYLNGVKIPHILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGL 163 (466)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCcCccccchHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHH
Confidence 88889999999999999999999999999999987777788999999999999999999999999999999999999999
Q ss_pred ccCCCCccchhhhhhhccCChhhhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004817 166 GQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAF 245 (729)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l 245 (729)
+|..++.++++++++|.+++++++|++++||+|||+|++||||++|++|++|++.++|+.+.+++.++++.+++++++.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~~ 243 (466)
T cd03685 164 SQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFF 243 (466)
T ss_pred hhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 98655555655567776668889999999999999999999999999999999999999999999999999999888876
Q ss_pred HHHhhcCCccccCCCcceEEeeccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHH
Q 004817 246 IEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSV 325 (729)
Q Consensus 246 ~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (729)
..+........|+++....|..+.....+++.++++++++|++||++|.+|+++++++.+++++.+..+++.|++.++++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~illGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~lv 323 (466)
T cd03685 244 LSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVTRFRKRINHKGKLLKVLEALLV 323 (466)
T ss_pred HHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 54432222234443333334443234568889999999999999999999999999999988776543455667777776
Q ss_pred HHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHH
Q 004817 326 SVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSIL 405 (729)
Q Consensus 326 gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll 405 (729)
+++++++.+ ...++
T Consensus 324 ~~~~~~~~~------------------------------------------------------------------~~~l~ 337 (466)
T cd03685 324 SLVTSVVAF------------------------------------------------------------------PQTLL 337 (466)
T ss_pred HHHHHHHHH------------------------------------------------------------------HHHHH
Confidence 666654321 12244
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcc---CCCccHHHHHHHHHhhhhhhccchhHHHHHHHH
Q 004817 406 IFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE 482 (729)
Q Consensus 406 ~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~~g~~~~~~---~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~E 482 (729)
+++++|+++|++|+|+|+|||.|+|++++||++|+++|.+++.. ...+|..|+++||+|++++++|+|+|++++++|
T Consensus 338 ~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt~iviv~E 417 (466)
T cd03685 338 IFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVSLTVILLE 417 (466)
T ss_pred HHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHHccccCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhh
Confidence 55678999999999999999999999999999999999988653 357899999999999999999999999999999
Q ss_pred HhCCcchHHHHHHHHHHHHHHHhhcCCchHHHHHHhcCCCCCCCC
Q 004817 483 LTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAH 527 (729)
Q Consensus 483 ltg~~~~~~p~lia~~va~~v~~~~~~sly~~~l~~~G~~~~~~~ 527 (729)
+||++++++|+|+++++|+.+++.+++++||.+++.||+|++++-
T Consensus 418 lTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p~l~~~ 462 (466)
T cd03685 418 LTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVPFLHNG 462 (466)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCC
Confidence 999999999999999999999998888999999999999998753
No 6
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=100.00 E-value=6.2e-64 Score=556.72 Aligned_cols=421 Identities=35% Similarity=0.626 Sum_probs=346.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCCC
Q 004817 42 GLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVD 121 (729)
Q Consensus 42 Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~~ 121 (729)
|+++|+++..++..++|+.+++...+ +|..+++++++++++++++++++.|.++|+|+||++++++|.+
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 69 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC-----------NYIIYVLLALLFAFIAVLLVKVVAPYAAGSGIPEIKTILSGFI 69 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHhcCccccCCCHHHHHHHHcCcc
Confidence 78899999999999999988766542 3455677888889999999999999999999999999999977
Q ss_pred CCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhcc-CChhhhhHHHHhhcccc
Q 004817 122 TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYF-NNDRDRRDLITCGSSSG 200 (729)
Q Consensus 122 ~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~-~~~~~~r~li~~G~aAg 200 (729)
.++.+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| |++.. .++.+||++++||+|||
T Consensus 70 ~~~~~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAG 138 (445)
T cd03684 70 IRGFLGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAG 138 (445)
T ss_pred ccccccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhh
Confidence 7889999999999999999999999999999999999999999997 33221 37789999999999999
Q ss_pred hhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCcccchhhHH
Q 004817 201 VCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDII 280 (729)
Q Consensus 201 iaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~ 280 (729)
++|+||||++|++|++|++.++|+.+.++++++++++++.+++.+. .|+.++...|+++. ...++..+++
T Consensus 139 laAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~~---------~~~~~~~~~f~~~~-~~~~~~~~l~ 208 (445)
T cd03684 139 VAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSLN---------PFGTGRLVLFEVEY-DRDWHYFELI 208 (445)
T ss_pred hHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHhc---------ccCCCCceEEeccC-CCCccHHHHH
Confidence 9999999999999999999999999999999999999998887642 34444444565542 3577889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCC
Q 004817 281 PVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG 360 (729)
Q Consensus 281 ~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~~g 360 (729)
+++++|++||++|.+|+++++++.+++++.+. +.++++.++++++++++++++.|+.. |+
T Consensus 209 ~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~----------------~~-- 268 (445)
T cd03684 209 PFILLGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTR----------------LD-- 268 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHc----------------cc--
Confidence 99999999999999999999999999877642 23456778888999999999888871 21
Q ss_pred CcccccCCCCCchhhHHHhhcCchhHHHhhh---c-CCCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHH
Q 004817 361 NFKQFNCPNGHYNDLATLLLTTNDDAVRNIF---S-SNTPTE-FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMG 435 (729)
Q Consensus 361 ~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~---~-~~~~~~-~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iG 435 (729)
+++.+..++.+.....-.+.. . ...+.+ .....+++++++|+++|++|+|+|+|||.|+|++++|
T Consensus 269 ----------g~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iG 338 (445)
T cd03684 269 ----------MTELLELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVG 338 (445)
T ss_pred ----------hhhHHHHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHH
Confidence 122222221110000000000 0 000111 1345567778899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcc-----------------CCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHH
Q 004817 436 SAYGRLLGMAMGSY-----------------TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLL 498 (729)
Q Consensus 436 a~~G~~~g~~~~~~-----------------~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~ 498 (729)
|++|+++|++++.. ...+|..|+++||+|++++++|+|+|++++++|+||++++++|++++++
T Consensus 339 A~~G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~ 418 (445)
T cd03684 339 ALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVM 418 (445)
T ss_pred HHHhHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHH
Confidence 99999999988642 1367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc-CCchHHHHHHhcCCCCC
Q 004817 499 IAKTVGDSF-NPSIYEIILELKGLPFL 524 (729)
Q Consensus 499 va~~v~~~~-~~sly~~~l~~~G~~~~ 524 (729)
+|+.+++.+ .+++||.+++.||+|++
T Consensus 419 iA~~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 419 VSKWVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred HHHHHHHHhCCCCHHHHHHHhcCCCCC
Confidence 999999998 68999999999999985
No 7
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=100.00 E-value=8.8e-62 Score=537.18 Aligned_cols=410 Identities=31% Similarity=0.577 Sum_probs=339.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHH
Q 004817 35 WSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIK 114 (729)
Q Consensus 35 wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~ 114 (729)
|+..+++|+++|+++.+++..++++.+++...... . +++++..++.+++++++++++++++++++.|+++|+||||++
T Consensus 2 w~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~ 79 (426)
T cd03683 2 WLFLALLGILMALISIAMDFAVEKLLNARRWLYSL-L-TGNSLLQYLVWVAYPVALVLFSALFCKYISPQAVGSGIPEMK 79 (426)
T ss_pred eEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHH
Confidence 78889999999999999999999999887765332 2 233444566777888888899999999999999999999999
Q ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHH
Q 004817 115 AYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLIT 194 (729)
Q Consensus 115 ~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~ 194 (729)
++++|.+.++++++|+++.|++++.+++++|+|+|||||++|+|+++++.++| .++.++ ...+++.+||++++
T Consensus 80 ~~l~g~~~~~~l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~----~~~~~~---~~~~~~~~rr~Li~ 152 (426)
T cd03683 80 TILRGVVLPEYLTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSK----LTTFFS---GIYENESRRMEMLA 152 (426)
T ss_pred HHHcCCCccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHh----hccccc---ccccCHHHHHHHHH
Confidence 99999877888999999999999999999999999999999999999999998 332110 00236678899999
Q ss_pred hhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcc-eEEeec-cCCc
Q 004817 195 CGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGL-IMFDVS-NVPV 272 (729)
Q Consensus 195 ~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~-~~f~~~-~~~~ 272 (729)
||+|||++|+||||++|++|++|++.++|+.+.+|+++++|++++++.+.+..+.. +..+. ..|... ....
T Consensus 153 ~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 225 (426)
T cd03683 153 AACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFS-------DQETITALFKTTFFVDF 225 (426)
T ss_pred hHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCccccccccccccCCC
Confidence 99999999999999999999999999999999999999999999988776543211 11110 012111 1235
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCC
Q 004817 273 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQ---KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSF 349 (729)
Q Consensus 273 ~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~ 349 (729)
+++..++++++++|++||++|.+|++++.++.+++++.+. ..+..+.+.+++++++++++.+ |
T Consensus 226 ~~~~~~l~~~i~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p------------ 291 (426)
T cd03683 226 PFDVQELPIFALLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P------------ 291 (426)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H------------
Confidence 6788999999999999999999999999999888765432 1233566777777777664321 1
Q ss_pred CCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchh
Q 004817 350 PETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 429 (729)
Q Consensus 350 ~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~ 429 (729)
+..+++++++|+++|++|+|+|+|||.|+
T Consensus 292 ---------------------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~ 320 (426)
T cd03683 292 ---------------------------------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFM 320 (426)
T ss_pred ---------------------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhH
Confidence 13455677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccC----------CCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHH
Q 004817 430 PIILMGSAYGRLLGMAMGSYT----------NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLI 499 (729)
Q Consensus 430 Psl~iGa~~G~~~g~~~~~~~----------~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~v 499 (729)
|++++||++|+++|.++.... ..++..|+++||+|++++++|+|.++ ++++|+||++++++|+++++++
T Consensus 321 Psl~iGa~~G~~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~i 399 (426)
T cd03683 321 PVFVIGAALGRLVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLI 399 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHH
Confidence 999999999999999887532 35789999999999999999998766 6999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHhcCCCCCCC
Q 004817 500 AKTVGDSFNPSIYEIILELKGLPFLDA 526 (729)
Q Consensus 500 a~~v~~~~~~sly~~~l~~~G~~~~~~ 526 (729)
|+.+++.+.+|+||.+++.||+|++|+
T Consensus 400 a~~v~~~~~~~iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 400 SNAVAQFLQPSIYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHhhCCCHHHHHHHhCCCCCCCC
Confidence 999999887899999999999999874
No 8
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=100.00 E-value=9.4e-61 Score=527.96 Aligned_cols=403 Identities=37% Similarity=0.654 Sum_probs=333.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCCC
Q 004817 42 GLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVD 121 (729)
Q Consensus 42 Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~~ 121 (729)
|+++|+++.+++..++++++++.+.+.+. ++++...|+.|+.++++++++++++++++.|+++|+||||++++++|.+
T Consensus 1 ~~~~Glv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a~GsGIp~v~~~l~g~~ 78 (416)
T cd01036 1 GLLMGLVAVVLDYAVESSLDAGQWLLRRI--PGSYLLGYLMWVLWSVVLVLISSGICLYFAPQAAGSGIPEVMAYLNGVH 78 (416)
T ss_pred CeeehHHHHHHHHHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHHHHcCCc
Confidence 67889999999999999999988876542 2334456676788888999999999999999999999999999999987
Q ss_pred CCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccch
Q 004817 122 TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGV 201 (729)
Q Consensus 122 ~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAgi 201 (729)
.++++++|+++.|++++++++++|+|+|||||++|+|+++|+++++.....++++.++++.+.++++||++++||+|||+
T Consensus 79 ~~~~l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGl 158 (416)
T cd01036 79 LPMYLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGV 158 (416)
T ss_pred ccccccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcch
Confidence 88899999999999999999999999999999999999999999984322222222344444578899999999999999
Q ss_pred hhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCC-cceEEeeccCCcccchhhHH
Q 004817 202 CAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTG-GLIMFDVSNVPVRYHVMDII 280 (729)
Q Consensus 202 aa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~-~~~~f~~~~~~~~~~~~~l~ 280 (729)
+|+||||++|++|++|++.++|+.+.+++.++++++++++.+.+.++........+.+. ....++++ ...++++.+++
T Consensus 159 aAaF~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 237 (416)
T cd01036 159 ASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFI 237 (416)
T ss_pred hhccCCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHH
Confidence 99999999999999999999999999999999999998888865433211000000000 00012233 24667889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCC
Q 004817 281 PVTLIGIIGGILGGLYNHILHKVLRLYNLINQK-GKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRS 359 (729)
Q Consensus 281 ~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~~ 359 (729)
+++++|++||++|.+|+++++++.+++++.++. .++.+++.+.+++++++++.+
T Consensus 238 ~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------------------- 292 (416)
T cd01036 238 PTVVIGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-------------------------
Confidence 999999999999999999999999988765432 355677888888888775432
Q ss_pred CCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHH
Q 004817 360 GNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYG 439 (729)
Q Consensus 360 g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G 439 (729)
...+++++++|+++|++|+++|+|||.|+|++++||++|
T Consensus 293 -----------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G 331 (416)
T cd01036 293 -----------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIG 331 (416)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Confidence 123456678899999999999999999999999999999
Q ss_pred HHHHHHhhccC-----------CCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcC
Q 004817 440 RLLGMAMGSYT-----------NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFN 508 (729)
Q Consensus 440 ~~~g~~~~~~~-----------~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~~ 508 (729)
+++|.+++... ..+|..|+++||+|++++++|+|+|++++++|+||++++++|+++++++|+.+++.+.
T Consensus 332 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~ 411 (416)
T cd01036 332 RLVGLLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFC 411 (416)
T ss_pred HHHHHHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhC
Confidence 99999886532 3688999999999999999999999999999999999999999999999999999888
Q ss_pred CchHH
Q 004817 509 PSIYE 513 (729)
Q Consensus 509 ~sly~ 513 (729)
+|+||
T Consensus 412 ~siY~ 416 (416)
T cd01036 412 ESLYH 416 (416)
T ss_pred CCCCC
Confidence 88886
No 9
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=100.00 E-value=7.9e-59 Score=511.34 Aligned_cols=408 Identities=21% Similarity=0.284 Sum_probs=328.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhcc--CCCCCC
Q 004817 33 LKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVV-SFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAP--TAAGPG 109 (729)
Q Consensus 33 ~~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p--~~~g~G 109 (729)
++|++++++|+++|+++.+|+..+++++++.++... ++.+..+...+| +.++++++.+++++++.+++.| +.+++|
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~p~~ggll~g~~~~~~~~~~~~~~~g 81 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPW-RRLLTPALGGLAAGLLLWGWQKFTQQRPHA 81 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchH-HHHHHHHHHHHHHHHHHHHHcccccccCCC
Confidence 356689999999999999999999998776543211 111111111122 3346677788888888777765 467889
Q ss_pred HHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhh
Q 004817 110 IPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 189 (729)
Q Consensus 110 i~~i~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~ 189 (729)
++++++.++. ++++++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++ ++++|
T Consensus 82 ~~~vi~av~~---~g~~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~ 144 (418)
T PRK01610 82 PTDYMEALQT---DGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEW 144 (418)
T ss_pred cHHHHHHHHc---CCCCCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHH
Confidence 9998777664 467899999999999999999999999999999999999999998 333 45789
Q ss_pred hHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeecc
Q 004817 190 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSN 269 (729)
Q Consensus 190 r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~ 269 (729)
|++++||+|||++|+||||++|++|++|++.++++.+.+.++++++++++++.+. +++.++ ..|+++.
T Consensus 145 r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~-----------~~g~~~-~~~~i~~ 212 (418)
T PRK01610 145 KLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNL-----------LNGSDA-LLYNVQL 212 (418)
T ss_pred HHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----------HcCCCC-CeeecCC
Confidence 9999999999999999999999999999999888888888888888877777664 344332 2566663
Q ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCC
Q 004817 270 VPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSF 349 (729)
Q Consensus 270 ~~~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~ 349 (729)
...+++.++++++++|++||++|.+|++++++.++++++.+.+ +.+.+.++|++++++.+++|++
T Consensus 213 -~~~~~~~~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~~~~----~~~~~~lggli~g~l~~~~p~~---------- 277 (418)
T PRK01610 213 -SVTVQARDYALIISTGLLAGLCGPLLLTLMNASHRGFVSLKLA----PPWQLALGGLIVGLLSLFTPAV---------- 277 (418)
T ss_pred -cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----hhHHHHHHHHHHHHHHHHhhHH----------
Confidence 4677889999999999999999999999999998888765432 3345677888889888888877
Q ss_pred CCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchh
Q 004817 350 PETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 429 (729)
Q Consensus 350 ~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~ 429 (729)
.|. +|+.+... +. .+..+..+++++++|+++|++|+|+|++||.|+
T Consensus 278 ------~G~------------G~~~i~~~------------~~----~~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~ 323 (418)
T PRK01610 278 ------WGN------------GYSVVQSF------------LT----APPLLMLIAGIFLCKLLAVLASSGSGAPGGVFT 323 (418)
T ss_pred ------hCC------------cHHHHHHH------------Hc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhH
Confidence 332 24333222 21 123445566677899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc-C--CCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhh
Q 004817 430 PIILMGSAYGRLLGMAMGSY-T--NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDS 506 (729)
Q Consensus 430 Psl~iGa~~G~~~g~~~~~~-~--~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~ 506 (729)
|++++||++|.++|++++.. + ...+..|+++||+|++++++|+|+|++++++|+||++++++|+++++++|+++++.
T Consensus 324 P~l~iGa~~G~~~g~~~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 324 PTLFVGLAIGMLYGRSLGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998752 2 22367899999999999999999999999999999999999999999999999998
Q ss_pred c-CCchHHHHHHhc
Q 004817 507 F-NPSIYEIILELK 519 (729)
Q Consensus 507 ~-~~sly~~~l~~~ 519 (729)
+ ++++|+.++.++
T Consensus 404 ~~~~siy~~~~~~~ 417 (418)
T PRK01610 404 LRRDSIYRQHTAEH 417 (418)
T ss_pred hCCCCchHHHHhcc
Confidence 8 899999998764
No 10
>PRK05277 chloride channel protein; Provisional
Probab=100.00 E-value=6.4e-57 Score=502.03 Aligned_cols=409 Identities=28% Similarity=0.485 Sum_probs=333.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHH
Q 004817 36 SLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKA 115 (729)
Q Consensus 36 l~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~ 115 (729)
++++++|+++|+++.+|+..++++++++++.... .. ..++..|..+++.+.+++.+++++++++.|+.+|+|+||+++
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~~GsGi~~i~~ 79 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLAS-VA-DNGLLLWIVAFLISAVLAMIGYFLVRRFAPEAGGSGIPEIEG 79 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHH
Confidence 4689999999999999999999999998776432 11 122233444455667777788889999999999999999999
Q ss_pred HHhCCCCCCccc-hhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHH
Q 004817 116 YLNGVDTPNMFG-ATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLIT 194 (729)
Q Consensus 116 ~l~g~~~~~~l~-~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~ 194 (729)
.+++.+ .++ .++.+.|++++++++++|+|+|||||++|+|+++|+++++ ++++ .++.++|++++
T Consensus 80 ~l~~~~---~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~----~~~~--------~~~~~~~~li~ 144 (438)
T PRK05277 80 ALEGLR---PVRWWRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD----IFRL--------RSDEARHTLLA 144 (438)
T ss_pred HHcCCC---ccchHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH----Hccc--------CCHHHHHHHHH
Confidence 998742 234 5788999999999999999999999999999999999998 3332 14578999999
Q ss_pred hhcccchhhhccCCcchhhhhhhhhhhh--hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCc
Q 004817 195 CGSSSGVCAAFRAPVGGVLFSLEEVATW--WRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPV 272 (729)
Q Consensus 195 ~G~aAgiaa~F~APlaG~lF~~E~~~~~--~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~ 272 (729)
||+|||++++||||++|++|++|++.++ |+.+.+++.+++++++..+.+. ++++++ .++++. ..
T Consensus 145 ~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~-----------~~g~~~--~~~~~~-~~ 210 (438)
T PRK05277 145 AGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRL-----------FNGEQA--VIEVGK-FS 210 (438)
T ss_pred HHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH-----------hcCCCc--eEeccC-CC
Confidence 9999999999999999999999998764 4666778888888788777774 345444 556653 34
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCC
Q 004817 273 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPET 352 (729)
Q Consensus 273 ~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~ 352 (729)
.+++.+++.++++|++||++|.+|++++.+.++++++++.+.+++.++.+.++|++++++.++.|+.
T Consensus 211 ~~~~~~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~------------- 277 (438)
T PRK05277 211 APPLNTLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA------------- 277 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh-------------
Confidence 4677889999999999999999999999999999887654334444456677788888888887776
Q ss_pred CCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHH
Q 004817 353 CPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPII 432 (729)
Q Consensus 353 ~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl 432 (729)
.|. +|+.+. ..+. ++.++..++.++++|++++++|+|+|++||.|+|++
T Consensus 278 ---~g~------------G~~~i~------------~~~~----~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl 326 (438)
T PRK05277 278 ---VGG------------GFNLIP------------IALA----GNFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPML 326 (438)
T ss_pred ---cCC------------hHHHHH------------HHHc----CCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 232 243332 2222 244556667778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcc---CCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc-C
Q 004817 433 LMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-N 508 (729)
Q Consensus 433 ~iGa~~G~~~g~~~~~~---~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~-~ 508 (729)
++||++|+++|++++.. ...++..|+++||+|++++++|+|+|++++++|+||+++.++|+++++++|+.+++.+ .
T Consensus 327 ~iGa~~G~~~g~~~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~ 406 (438)
T PRK05277 327 ALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGG 406 (438)
T ss_pred HHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999987653 2467899999999999999999999999999999999999999999999999999998 7
Q ss_pred CchHHHHHHhc
Q 004817 509 PSIYEIILELK 519 (729)
Q Consensus 509 ~sly~~~l~~~ 519 (729)
+++|+.++++.
T Consensus 407 ~~iy~~~l~~~ 417 (438)
T PRK05277 407 KPIYSALLERT 417 (438)
T ss_pred CChHHHHHHHH
Confidence 89999999865
No 11
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=100.00 E-value=3.8e-57 Score=499.23 Aligned_cols=397 Identities=30% Similarity=0.496 Sum_probs=333.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCC
Q 004817 41 VGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGV 120 (729)
Q Consensus 41 ~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~ 120 (729)
+|+++|+++.+|+..++++++++++...... +.+..|..+++++.+++++++++.+++.|+.+|+|+|++++.+++.
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~~g~G~~~v~~~l~~~ 77 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAA---NNPPLLLVLPLISAVLGLLAGWLVKKFAPEAKGSGIPQVEGVLAGL 77 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcc---cccHHHHHHHHHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHcCC
Confidence 4889999999999999999999887643221 2223445566777888889999998889999999999999999874
Q ss_pred CCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccc
Q 004817 121 DTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSG 200 (729)
Q Consensus 121 ~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAg 200 (729)
. +.+++++.+.|++++++++++|+|+|||||++|+|+++|++++| ++|. ++.++|.+++||+|||
T Consensus 78 ~--~~~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag 142 (402)
T cd01031 78 L--PPNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAG 142 (402)
T ss_pred C--CcccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHh
Confidence 2 35678999999999999999999999999999999999999997 3332 5678999999999999
Q ss_pred hhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCcccchhhHH
Q 004817 201 VCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDII 280 (729)
Q Consensus 201 iaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~ 280 (729)
++++||||++|++|++|++.++|+.+.+++.+++++++.++.+. ++++++ .|.++. ...+++.+++
T Consensus 143 ~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~-----------~~~~~~--~~~~~~-~~~~~~~~l~ 208 (402)
T cd01031 143 LAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRL-----------FFGLGP--VLSIPP-LPALPLKSYW 208 (402)
T ss_pred HHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH-----------HcCCCc--eEecCC-CCCCCHHHHH
Confidence 99999999999999999999888888899998888888887774 356555 455553 4668899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCC
Q 004817 281 PVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG 360 (729)
Q Consensus 281 ~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~~g 360 (729)
+++++|++||++|.+|+++.++.++++++.++. ++.+.+.+++++++++.++.|+. .|.
T Consensus 209 ~~illGv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~l~gl~~~~~~~~~p~~----------------~g~-- 267 (402)
T cd01031 209 LLLLLGIIAGLLGYLFNRSLLKSQDLYRKLKKL---PRELRVLLPGLLIGPLGLLLPEA----------------LGG-- 267 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---ChhHHHHHHHHHHHHHHHHHHHH----------------hCC--
Confidence 999999999999999999999999988775322 23445567778888888888887 232
Q ss_pred CcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHH
Q 004817 361 NFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGR 440 (729)
Q Consensus 361 ~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~ 440 (729)
+|+. ++..+. ++.++..++.++++|+++|++|+++|++||.|+|++++||++|+
T Consensus 268 ----------G~~~------------i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~ 321 (402)
T cd01031 268 ----------GHGL------------ILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGL 321 (402)
T ss_pred ----------HHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 1322 232222 24456677778899999999999999999999999999999999
Q ss_pred HHHHHhhcc---CCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc-CCchHHHHH
Q 004817 441 LLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIIL 516 (729)
Q Consensus 441 ~~g~~~~~~---~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~-~~sly~~~l 516 (729)
++|++++.. ...++..|+++||+|++++++|+|++++++++|+||++++++|+++++++|+.+++.+ ++++||.++
T Consensus 322 ~~g~~~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l 401 (402)
T cd01031 322 LFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALL 401 (402)
T ss_pred HHHHHHHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHh
Confidence 999988753 2467899999999999999999999999999999999999999999999999999988 999999876
No 12
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.2e-55 Score=483.16 Aligned_cols=383 Identities=20% Similarity=0.265 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCC
Q 004817 42 GLLTGLIATLINLAVENIAGYKLLAVVS-FIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGV 120 (729)
Q Consensus 42 Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~ 120 (729)
|+++|+.+.+|+..+++++++.+....+ +.+..... .+++..+.+++.+++++++.+++ + ..|+|+||+++.+++
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~ggl~~~l~~~~~-~-~~g~gi~~v~~~~~~- 76 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAV-SPIRRALSLTVGGLIAGLGWYLL-R-RKGKKLVSIKQAVRG- 76 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccC-ChHHHHHHHHHHHHHHHHHHHHH-h-ccCCCcccHHHHhcC-
Confidence 6889999999999999999998764221 11100011 11223345566677777664443 3 469999999999987
Q ss_pred CCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccc
Q 004817 121 DTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSG 200 (729)
Q Consensus 121 ~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAg 200 (729)
++.+++++.+.|.+++++++++|+|+|||||++|+|+++|++++| ++ |. ++++||++++||+|||
T Consensus 77 --~~~~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~----~~-------~~--~~~~~r~li~~GaaAG 141 (388)
T cd01033 77 --KKRMPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD----WL-------GL--TVADRRLLVACAAGAG 141 (388)
T ss_pred --CCCCCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH----Hh-------CC--CHHHHHHHHHHHHHHH
Confidence 345889999999999999999999999999999999999999998 33 33 6788999999999999
Q ss_pred hhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCcccchhhHH
Q 004817 201 VCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDII 280 (729)
Q Consensus 201 iaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~ 280 (729)
++|+||||++|++|++|++.++++.+.+++.++++.++.++.+. ++++++ .|+++. .++++.+++
T Consensus 142 laa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~-----------~~g~~~--~f~~~~--~~~~~~~l~ 206 (388)
T cd01033 142 LAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASL-----------LKGDHP--IYDIPP--MQLSTPLLI 206 (388)
T ss_pred HHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----------hCCCCc--eeecCC--CCCCHHHHH
Confidence 99999999999999999999999998888988888888887775 356655 566653 345578899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCC
Q 004817 281 PVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG 360 (729)
Q Consensus 281 ~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~~g 360 (729)
+++++|++||++|.+|+++++++++++++.+ +.++.+.+++++++++.++.|++ .|.
T Consensus 207 ~~illGi~~Gl~~~lf~~~~~~~~~~~~~~~-----~~~~~~~l~gl~~g~~~~~~p~~----------------~G~-- 263 (388)
T cd01033 207 WALLAGPVLGVVAAGFRRLSQAARAKRPKGK-----RILWQMPLAFLVIGLLSIFFPQI----------------LGN-- 263 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHHHHHHHHHHH----------------hCC--
Confidence 9999999999999999999999888764321 22334557778888888888887 232
Q ss_pred CcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHH
Q 004817 361 NFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGR 440 (729)
Q Consensus 361 ~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~ 440 (729)
+|+.+ +.+++ ++.+...++.++++|+++|++|+|+|++||.|+|++++||++|+
T Consensus 264 ----------G~~~i------------~~~~~----~~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~ 317 (388)
T cd01033 264 ----------GRALA------------QLAFS----TTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGA 317 (388)
T ss_pred ----------cHHHH------------HHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHH
Confidence 23332 22222 23345566777889999999999999999999999999999999
Q ss_pred HHHHHhhcc-CCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhC-CcchHHHHHHHHHHHHHHHhhc
Q 004817 441 LLGMAMGSY-TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NLLLLPITMIVLLIAKTVGDSF 507 (729)
Q Consensus 441 ~~g~~~~~~-~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg-~~~~~~p~lia~~va~~v~~~~ 507 (729)
.+|++++.. +..++..|+++||+|++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus 318 ~~g~~~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 318 LLGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999988653 356788999999999999999999999999999999 9999999999999999999754
No 13
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-55 Score=483.53 Aligned_cols=409 Identities=28% Similarity=0.468 Sum_probs=323.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH-HHHHhhccCCCCCCHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAA-VLCVCFAPTAAGPGIPE 112 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~p~~~g~Gi~~ 112 (729)
.+..+.++|++.++....++....+........+. ..+.. .+++.++.+..++++++ ++.+++.|+++|+|+|+
T Consensus 22 ~i~~~~~lgvi~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~gl~~g~~~~~~~~p~~~g~Gi~~ 96 (443)
T COG0038 22 LIGIAAALGVIVGLFAVALDLALLLLGRLRGGLLS----AAQAP-GPWLLPLVPALGGLLVGALLVYKFAPEARGSGIPQ 96 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc----ccccc-hhHHHHHHHHHHHHHHHHHHHHHhCccccCCChhH
Confidence 34467777777777666666666655544332211 00111 12233344555666767 68888999999999999
Q ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHH
Q 004817 113 IKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDL 192 (729)
Q Consensus 113 i~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l 192 (729)
+++.+++. ++.++++..+.|++++.+++++|+|+|||||++|+|+++|+.++| ++|. ++.+||.+
T Consensus 97 ~i~a~~~~--~~~~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~L 161 (443)
T COG0038 97 AIEALHGR--KGRISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRIL 161 (443)
T ss_pred HHHHHhcC--CCcccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHH
Confidence 98888763 567889999999999999999999999999999999999999998 4443 57899999
Q ss_pred HHhhcccchhhhccCCcchhhhhhhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCC
Q 004817 193 ITCGSSSGVCAAFRAPVGGVLFSLEEVATW-WRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVP 271 (729)
Q Consensus 193 i~~G~aAgiaa~F~APlaG~lF~~E~~~~~-~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~ 271 (729)
++||+|||+||+||||++|++|++|++.++ ++.+.++++++++.++..+... +++.+. .+.+++ .
T Consensus 162 l~~GaAaGlaaaF~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~-----------~~~~~~--~~~~~~-~ 227 (443)
T COG0038 162 LAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGL-----------FGGPHF--LLPIVT-T 227 (443)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHH-----------cCCCCc--eeeccc-c
Confidence 999999999999999999999999999988 8888888888777777776664 334333 444443 5
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCC
Q 004817 272 VRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE 351 (729)
Q Consensus 272 ~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~ 351 (729)
..+++++++.++++|+++|++|.+|.++....++++++. +.++.+.+.+++++++.+.++.|++
T Consensus 228 ~~~~~~~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~l~g~~~l~~P~~------------ 291 (443)
T COG0038 228 PHMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFFRRL----PLPPLLRPALGGLLVGALGLLFPEV------------ 291 (443)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHhchhh------------
Confidence 678899999999999999999999999997776665543 3346677788888999999998987
Q ss_pred CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHH
Q 004817 352 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 431 (729)
Q Consensus 352 ~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Ps 431 (729)
.|. +|+...... ..+..+..++.++++|.++|++|+|+|+|||+|+|+
T Consensus 292 ----lg~------------G~~~~~~~~----------------~~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Ps 339 (443)
T COG0038 292 ----LGN------------GYGLIQLAL----------------AGEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPS 339 (443)
T ss_pred ----hCC------------CccHHHHHH----------------ccCccHHHHHHHHHHHHHHHHHHHhcCCCcceehHH
Confidence 232 233222221 122333325667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhccCC---CccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc-
Q 004817 432 ILMGSAYGRLLGMAMGSYTN---IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF- 507 (729)
Q Consensus 432 l~iGa~~G~~~g~~~~~~~~---~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~- 507 (729)
+++||++|.++|..++.... ..+..|+++||+|++++++|+|+|++++++||||+++.++|+++++++++.+++..
T Consensus 340 l~iGa~lG~~~g~~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~ 419 (443)
T COG0038 340 LFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLG 419 (443)
T ss_pred HHHHHHHHHHHHHHHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999876422 34679999999999999999999999999999999999999999999999999988
Q ss_pred CCchHHHHHHhcCCCCC
Q 004817 508 NPSIYEIILELKGLPFL 524 (729)
Q Consensus 508 ~~sly~~~l~~~G~~~~ 524 (729)
+.++|+...++++.+..
T Consensus 420 ~~~~~~~~~~~~~~~~~ 436 (443)
T COG0038 420 GRPIYTQLLARRGAPIL 436 (443)
T ss_pred CCcHHHHHHHhcCchhh
Confidence 88999999998887643
No 14
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.6e-54 Score=475.76 Aligned_cols=385 Identities=23% Similarity=0.345 Sum_probs=305.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCC---CC
Q 004817 46 GLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGV---DT 122 (729)
Q Consensus 46 Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~---~~ 122 (729)
|+++..|+.+++++++++..... .+ + |+.+++.+++. .+++++.+++.|+++|+|+||+++.+++. +.
T Consensus 1 g~~~~~~~~~~~~~~~~~~~~~~----~~-~---~~~~~~~p~~~-~~~~~~~~~~~p~~~gsGi~~v~~~~~~~~~~~~ 71 (390)
T cd01034 1 GLVALLFAKLADLALALFQRLTA----TH-P---WLPLLLTPAGF-ALIAWLTRRFFPGAAGSGIPQVIAALELPSAAAR 71 (390)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHH----hc-h---HHHHHHHHHHH-HHHHHHHHhhCCCCCCCCHHHHHHHHcccccccc
Confidence 56788999999999988775532 22 2 22334455554 44555666789999999999999988753 23
Q ss_pred CCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccchh
Q 004817 123 PNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVC 202 (729)
Q Consensus 123 ~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAgia 202 (729)
++++++|+.+.|++++++++++|+|+|||||++|+|+++|++++| ++++ .++.++|++++||+|||++
T Consensus 72 ~~~~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~----~~~~--------~~~~~~r~li~~GaaAGla 139 (390)
T cd01034 72 RRLLSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR----RLPK--------WGGLSERGLILAGGAAGLA 139 (390)
T ss_pred cccccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH----Hccc--------CchHHHHHHHHHHHHHhHH
Confidence 457999999999999999999999999999999999999999998 3332 1357899999999999999
Q ss_pred hhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCcccchhhHHHH
Q 004817 203 AAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 282 (729)
Q Consensus 203 a~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~~ 282 (729)
|+||||++|++|++|++.++|+.+.+++.+.++++++++.+. ++++++ .|.+++ ...+++.+++++
T Consensus 140 a~F~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~g~~~--~f~~~~-~~~~~~~~~~~~ 205 (390)
T cd01034 140 AAFNTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLA-----------VLGNYP--YFGVAA-VALPLGEAWLLV 205 (390)
T ss_pred HHhCCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----------HcCCCC--ccCCCC-CCcCCHHHHHHH
Confidence 999999999999999999998888888877777777776653 345554 455542 234677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCC
Q 004817 283 TLIGIIGGILGGLYNHILHKVLRLYNLINQ-KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN 361 (729)
Q Consensus 283 ~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~~g~ 361 (729)
+++|++||++|.+|++.+.++.+++++... +...++++.+.++|++++++.++.|... .|.
T Consensus 206 illGii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~---------------~G~--- 267 (390)
T cd01034 206 LVCGVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLT---------------FGT--- 267 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCcc---------------ccC---
Confidence 999999999999999999999888876532 2233445666777788887777654220 121
Q ss_pred cccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 004817 362 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 441 (729)
Q Consensus 362 ~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~ 441 (729)
+|+.+.. .++.+ ... .+.++++|+++|++|+++|+|||+|+|++++||++|++
T Consensus 268 ---------G~~~i~~------------~~~~~--~~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~ 320 (390)
T cd01034 268 ---------GYLQARA------------ALEGG--GGL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSL 320 (390)
T ss_pred ---------cHHHHHH------------HHhCC--Ccc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHH
Confidence 2333332 22211 111 12356789999999999999999999999999999999
Q ss_pred HHHHhhccCCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhc-CCchHH
Q 004817 442 LGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYE 513 (729)
Q Consensus 442 ~g~~~~~~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~-~~sly~ 513 (729)
++++++ ..++..|+++||+|++++++|+|+|++++++|+||++++++|+++++++|+.+++.+ ++++||
T Consensus 321 ~~~~~~---~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 321 LAALLG---SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred HHHHhc---CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 999885 258999999999999999999999999999999999999999999999999999988 788885
No 15
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=100.00 E-value=1.2e-54 Score=471.37 Aligned_cols=346 Identities=34% Similarity=0.619 Sum_probs=277.7
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCC
Q 004817 90 LTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG 169 (729)
Q Consensus 90 ~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~ 169 (729)
++++++++++++.|+++|+|+||+++.+++. ++++++|+.+.|++++++++++|+|+|||||++|+|+++|++++|
T Consensus 2 ~~~~~~~l~~~~~p~~~g~Gi~~v~~~~~~~--~~~~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-- 77 (355)
T PF00654_consen 2 GGLLSGLLWKKFAPEAAGSGIPEVKAALRGK--SGRLPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-- 77 (355)
T ss_dssp HHHHHHHHHHHC-GGGSB-SHHHHHHHCTTS--S---HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH--
T ss_pred EEEEeeHHHHHHCCccCCCCHHHHHHHHhCC--CCCCCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH--
Confidence 4677888999999999999999999998874 345899999999999999999999999999999999999999998
Q ss_pred CCccchhhhhhhccCChhh-hhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 004817 170 PDNHRIKWQWLRYFNNDRD-RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEI 248 (729)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~-~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~ 248 (729)
++++ ++.+ +|.+++||+|||++|+||||++|++|++|++.++++.+.+++.++++++++++.+.+
T Consensus 78 --~~~~---------~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~--- 143 (355)
T PF00654_consen 78 --RFRL---------SRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL--- 143 (355)
T ss_dssp --HTT-----------CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH---
T ss_pred --hhcc---------cchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHH---
Confidence 3332 3344 778999999999999999999999999999999999999999999999999988864
Q ss_pred hhcCCccccCCCcceEEe-eccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHH
Q 004817 249 CTSGKCGLFGTGGLIMFD-VSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSV 327 (729)
Q Consensus 249 ~~~~~~~~fg~~~~~~f~-~~~~~~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 327 (729)
+++++ .|. ++. ..++++.++++++++|++||++|.+|+++.+++++++++++ +.+.++.+.+.++|+
T Consensus 144 --------~~~~~--~f~~~~~-~~~~~~~~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl 211 (355)
T PF00654_consen 144 --------FGNHP--IFGSVPQ-LFPFSLWELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGL 211 (355)
T ss_dssp --------HTSS---SS---TT------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred --------cCcCc--ccccccc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHH
Confidence 34444 354 552 35889999999999999999999999999999999998875 333345568889999
Q ss_pred HHhhhhhcccc--ccccCCCCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHH
Q 004817 328 FTSVCQYCLPF--LADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSIL 405 (729)
Q Consensus 328 ~~~~i~~~~p~--~~~~~~~~~~~~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll 405 (729)
+++++.++.|+ + .|. +|+.+.. .+++ +...+.+..++
T Consensus 212 ~~g~l~~~~p~~~~----------------~g~------------G~~~i~~------------ll~~-~~~~~~~~~l~ 250 (355)
T PF00654_consen 212 VIGLLAFFFPEGSV----------------LGS------------GYELIQS------------LLSG-SPPWFSLGSLL 250 (355)
T ss_dssp HHHHHHHSSGG-SG----------------SSS------------STTHHHH------------HCTT-----S-HHHHH
T ss_pred HHHHHHHHHhhhcc----------------cCC------------cHHHHHH------------HHcC-CcchhhHHHHH
Confidence 99999999887 5 222 2333333 3321 11235678888
Q ss_pred HHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcc-C---CCccHHHHHHHHHhhhhhhccchhHHHHHHH
Q 004817 406 IFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-T---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFL 481 (729)
Q Consensus 406 ~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~~g~~~~~~-~---~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~ 481 (729)
+++++|+++|.+|+++|++||.|+|++++|+++|++++.+++.. + ..+|..|+++||+|++++++|+|++++++++
T Consensus 251 ~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~ 330 (355)
T PF00654_consen 251 LLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLVL 330 (355)
T ss_dssp HHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999874 1 2378999999999999999999999999999
Q ss_pred HHhCCcchHHHHHHHHHHHHHHHhh
Q 004817 482 ELTNNLLLLPITMIVLLIAKTVGDS 506 (729)
Q Consensus 482 Eltg~~~~~~p~lia~~va~~v~~~ 506 (729)
|+||++++++|+++++++|+.++++
T Consensus 331 Eltg~~~~~~p~lia~~~a~~v~~~ 355 (355)
T PF00654_consen 331 ELTGDFQLLLPLLIAVAVAYLVARW 355 (355)
T ss_dssp HHH--GGGHHHHHHHHHHHHHHHH-
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999873
No 16
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=100.00 E-value=3e-51 Score=450.35 Aligned_cols=380 Identities=28% Similarity=0.470 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHhCCC
Q 004817 42 GLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYLNGVD 121 (729)
Q Consensus 42 Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l~g~~ 121 (729)
|+++|+++.+|+..+++.++++++...+.. ......++++.+.+++++++++++.++..| ..|+|++++++.+++.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~-~~g~G~~~v~~~~~~~- 76 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGEL--AAGSLSPLYILLVPVIGGLLVGLLVRLLGP-ARGHGIPEVIEAIALG- 76 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhcccccc--ccccccHHHHHHHHHHHHHHHHHHHHHhCc-ccCCChHHHHHHHHhC-
Confidence 688999999999999999998876532111 001122334456677777888877766666 8899999998877652
Q ss_pred CCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccch
Q 004817 122 TPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGV 201 (729)
Q Consensus 122 ~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAgi 201 (729)
.+.+++++.+.|++++.+++++|+|+|||||++|+|+++|+++++ + ++. ++.++|.+++||++||+
T Consensus 77 -~~~~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~----~-------~~~--~~~~~~~l~~~G~aagl 142 (383)
T cd00400 77 -GGRLPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR----R-------LRL--SRNDRRILVACGAAAGI 142 (383)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH----H-------hCC--CHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999997 2 332 56789999999999999
Q ss_pred hhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCcccchhhHHH
Q 004817 202 CAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIP 281 (729)
Q Consensus 202 aa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~~~l~~ 281 (729)
+++||||++|++|++|++.++++.+.+++.++++.++..+.+.+ +++++ .|+++. ..++++.++++
T Consensus 143 aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~-----------~~~~~--~~~~~~-~~~~~~~~~~~ 208 (383)
T cd00400 143 AAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL-----------FGAEP--AFGVPL-YDPLSLLELPL 208 (383)
T ss_pred HHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--eeeCCC-CCcCCHHHHHH
Confidence 99999999999999999999888788888888888888877753 34443 556653 47888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCC
Q 004817 282 VTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN 361 (729)
Q Consensus 282 ~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~~g~ 361 (729)
++++|++||++|.+|+++.+++++++++.+ +++.+.+.+++++++++.++.|+. .|.
T Consensus 209 ~il~Gv~~g~~g~~f~~~~~~~~~~~~~~~----~~~~~~~~i~gll~~~~~~~~p~~----------------~g~--- 265 (383)
T cd00400 209 YLLLGLLAGLVGVLFVRLLYKIERLFRRLP----IPPWLRPALGGLLLGLLGLFLPQV----------------LGS--- 265 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHHHHHH----------------HcC---
Confidence 999999999999999999999998887642 234566777788888888888887 232
Q ss_pred cccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 004817 362 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 441 (729)
Q Consensus 362 ~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~ 441 (729)
+|+... ..+. .+.++..++.+++.|++++++|+++|++||.|+|++++||++|+.
T Consensus 266 ---------G~~~~~------------~~~~----~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~ 320 (383)
T cd00400 266 ---------GYGAIL------------LALA----GELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAA 320 (383)
T ss_pred ---------cHHHHH------------HHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHH
Confidence 132221 1111 234555667788899999999999999999999999999999999
Q ss_pred HHHHhhcc---CCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHH
Q 004817 442 LGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 501 (729)
Q Consensus 442 ~g~~~~~~---~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~ 501 (729)
++++++.. ...++..|+++||+|++++++|+|++++++++|+||+++.++|+++++++||
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 321 FGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHHHHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 99999752 3468999999999999999999999999999999999999999999998875
No 17
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=100.00 E-value=1.3e-49 Score=434.71 Aligned_cols=376 Identities=22% Similarity=0.313 Sum_probs=292.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHH
Q 004817 38 ACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEIKAYL 117 (729)
Q Consensus 38 ~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i~~~l 117 (729)
++++|+++|+++.+|+..+++++++++.. + |.. ...++ .+++++++.+++.|. .++|++++++.+
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~~---------~---~~~-~~~p~-~g~~i~~l~~~~~~~-~~~g~~~v~~~~ 66 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREAH---------P---WLL-PFLPL-AGLLIGYLYQKFGKN-SEKGNNLIIEEI 66 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------h---HHH-HHHHH-HHHHHHHHHHHhCcc-cCCChHHHHHHH
Confidence 68899999999999999999998875531 1 211 22233 456667787777554 568999988777
Q ss_pred hCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhc
Q 004817 118 NGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGS 197 (729)
Q Consensus 118 ~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~ 197 (729)
++. ++.++++..+.|++++.+++++|+|+|||||++|+|+++|++++| ++ |. +++++|.+++||+
T Consensus 67 ~~~--~~~~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~----~~-------~~--~~~~~r~l~~~g~ 131 (378)
T cd03682 67 HGP--EEGIPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR----VF-------KL--PEEDRRILLIAGI 131 (378)
T ss_pred Hcc--CCCCchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH----Hh-------CC--CHHHHHHHHHHHH
Confidence 642 456788999999999999999999999999999999999999998 33 32 4567899999999
Q ss_pred ccchhhhccCCcchhhhhhhhhh-hhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccCCcccch
Q 004817 198 SSGVCAAFRAPVGGVLFSLEEVA-TWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHV 276 (729)
Q Consensus 198 aAgiaa~F~APlaG~lF~~E~~~-~~~~~~~~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~~~~~~~ 276 (729)
|||++++||||++|++|++|+++ ++++.+.+++.++++.++..+.+.+ +.++. .|.++. ..++++
T Consensus 132 aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~------------~~~~~-~~~~~~-~~~~~~ 197 (378)
T cd03682 132 AAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL------------GLEHT-HYHIVF-IPTLDP 197 (378)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------------CCCCC-ccccCC-CCCCCH
Confidence 99999999999999999999996 6677777777777777777665532 21111 344442 356788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCC
Q 004817 277 MDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTN 356 (729)
Q Consensus 277 ~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~ 356 (729)
.++++++++|++||++|.+|+++.+++++++++... .+++.+.++|++++++.++.+.- .. .
T Consensus 198 ~~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~~~----~~~~~~~iggl~~g~~~~~~~~~-------~~-------~ 259 (378)
T cd03682 198 LLFVKVILAGIIFGLAGRLFAELLHFLKKLLKKRIK----NPYLRPFVGGLLIILLVYLLGSR-------RY-------L 259 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHhcCC-------cc-------c
Confidence 999999999999999999999999999998865432 23445666777777766653321 00 1
Q ss_pred CCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHH
Q 004817 357 GRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGS 436 (729)
Q Consensus 357 g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa 436 (729)
|. +|+.+... .++ ++.. ...+++|+++|++|+|+|+|||.|+|++++||
T Consensus 260 G~------------g~~~i~~~-----------~~~----~~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa 308 (378)
T cd03682 260 GL------------GTPLIEDS-----------FFG----GTVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGA 308 (378)
T ss_pred cC------------CHHHHHHH-----------Hhc----CCch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHH
Confidence 21 23333221 111 1222 22347899999999999999999999999999
Q ss_pred HHHHHHHHHhhccCCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhcCCchHH
Q 004817 437 AYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE 513 (729)
Q Consensus 437 ~~G~~~g~~~~~~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~~~~p~lia~~va~~v~~~~~~sly~ 513 (729)
++|+++++++ +.++..|+++||+|++++++|+|+|++++++|+|| ++.++|+++++++|+.+++ ++++|+
T Consensus 309 ~~G~~~~~~~----~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 309 TLGNALAPIL----GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 9999999998 46788999999999999999999999999999999 5788899999999999987 777774
No 18
>PRK03655 putative ion channel protein; Provisional
Probab=100.00 E-value=3.5e-47 Score=416.55 Aligned_cols=377 Identities=14% Similarity=0.200 Sum_probs=278.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 113 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i 113 (729)
.++.++++|+++|+++.+|+.+++++++++|....+........ .| +.+.++.+.+++++++.++ .|...|+ .|++
T Consensus 12 l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~gGllvgll~~~-~~~~~G~-~~~~ 87 (414)
T PRK03655 12 LSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDS-PL-WIIGMLTLTGIAVGLVIRF-SPGHAGP-DPAT 87 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc-ch-HHHHHHHHHHHHHHHHHHH-cCCCCCC-hHHH
Confidence 45689999999999999999999999999886532211111111 12 2234567778888888755 4655455 5666
Q ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHH
Q 004817 114 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 193 (729)
Q Consensus 114 ~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li 193 (729)
+..+.+ .++.+....|++++++++++|+|+|||||++|+|++++++++| +++ +..++|.++
T Consensus 88 ~~~~~~-----~~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~l~ 148 (414)
T PRK03655 88 EPLIGA-----PVPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMDWT 148 (414)
T ss_pred HHHhcC-----CCCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhHHH
Confidence 665432 4567888999999999999999999999999999999999997 221 224567789
Q ss_pred HhhcccchhhhccCCcchhhhhhhhhhhhhhhhh---HHHHHHHHHHHHHHHHHHHHHhhcCCccccCCCcceEEeeccC
Q 004817 194 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSAL---LWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNV 270 (729)
Q Consensus 194 ~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~---~~~~~~~~~va~~v~~~l~~~~~~~~~~~fg~~~~~~f~~~~~ 270 (729)
.||+|||+||+||||++|++|++|++.++|..+. ....++++++++.+.+. .++ +...++++.
T Consensus 149 ~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v~aa~~a~~v~~~-----------~~~--~~~~~~~~~- 214 (414)
T PRK03655 149 ILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPLMAAAAGALTTGL-----------FFH--PHFSLPIAH- 214 (414)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----------hCC--CCcceecCC-
Confidence 9999999999999999999999999988776421 12222333333333321 222 222344442
Q ss_pred CcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhcc-ccccccCCCCCCC
Q 004817 271 PVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCL-PFLADCKACDPSF 349 (729)
Q Consensus 271 ~~~~~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~i~~~~-p~~~~~~~~~~~~ 349 (729)
....+..++++++++|++||++|.+|++..+++++++++++. +.+...++|+++++++++. |++
T Consensus 215 ~~~~~~~~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~~~-----p~~~~~lgGl~vg~l~l~~~~~~---------- 279 (414)
T PRK03655 215 YGQMEMTDILSGAIVAAIAIAAGMVAVWCLPRLHALMHRLKN-----PVLVLGIGGFILGILGVIGGPLT---------- 279 (414)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHhCCcc----------
Confidence 345677889999999999999999999999998888776432 2234467777888777654 333
Q ss_pred CCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchh
Q 004817 350 PETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 429 (729)
Q Consensus 350 ~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~ 429 (729)
.|. +|+.+..+..+ .+++++.+++++++|+++|++|+++|+|||+|+
T Consensus 280 ------~g~------------Gy~~i~~~~~~---------------~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~ 326 (414)
T PRK03655 280 ------LFK------------GLDEMQQMAAN---------------QAFSASDYFLLAVVKLAALVVAAASGFRGGRIF 326 (414)
T ss_pred ------ccC------------CHHHHHHHHhc---------------CCccHHHHHHHHHHHHHHHHHHHccCCCCceeh
Confidence 221 35444333211 245666777788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHhhhhhhcc----chhHHHHHHHHHhCCcchHHHHHHHHHHH-HHH
Q 004817 430 PIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMR----MTVSLCVIFLELTNNLLLLPITMIVLLIA-KTV 503 (729)
Q Consensus 430 Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~vG~aa~~a~~~~----~pls~~vl~~Eltg~~~~~~p~lia~~va-~~v 503 (729)
|++++||++|..++++++ ..++...+++||+|++++++| +|+|+++++.||| +.|+|++++++ +++
T Consensus 327 PsL~iGA~~G~~~~~l~p---~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 327 PAVFVGVALGLMLHAHVP---AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHHHHHHHHHHHHHhcc---CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 999999999999999985 567888999999999999999 5999999999999 67777765444 444
No 19
>cd01034 EriC_like ClC chloride channel family. These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.69 E-value=7.2e-16 Score=169.84 Aligned_cols=182 Identities=19% Similarity=0.215 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 113 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i 113 (729)
.+...+++|+++|+++.+|++.+.+.++++.+... .......++ ...+.+++.+.+..+..|...|.|.+++
T Consensus 201 ~~~~~illGii~G~~g~lF~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~gl~~~~~~~~~~~~~~G~G~~~i 272 (390)
T cd01034 201 AWLLVLVCGVVGGLAGGLFARLLVALSSGLPGWVR----RFRRRRPVL----FAALCGLALALIGLVSGGLTFGTGYLQA 272 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cccchhhHH----HHHHHHHHHHHHHHhCCCccccCcHHHH
Confidence 45689999999999999999999888876554311 000111111 1122333334333333457788999999
Q ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHH
Q 004817 114 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 193 (729)
Q Consensus 114 ~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li 193 (729)
+..+++. ..+++..++.|++.+.+++++|.|+|+|+|++++|+++|+.+++ +++ ..+.+.++
T Consensus 273 ~~~~~~~---~~~~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~-----------~~~----~~~~~~~a 334 (390)
T cd01034 273 RAALEGG---GGLPLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA-----------LLG----SVSQGALV 334 (390)
T ss_pred HHHHhCC---CcccHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH-----------Hhc----CCCchHHH
Confidence 8887763 34567788999999999999999999999999999999999987 322 24678999
Q ss_pred HhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 004817 194 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 244 (729)
Q Consensus 194 ~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~ 244 (729)
++||+|++++++|+|+++++|++|++.. .+.+.+.++++.++..+.+.
T Consensus 335 ~~G~aA~laa~~~aPlt~~vl~~Elt~~---~~~l~p~lia~~~A~~v~~~ 382 (390)
T cd01034 335 LLGMAAFLAGVTQAPLTAFVIVMEMTGD---QQMLLPLLAAALLASGVSRL 382 (390)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999963 34566766666666665553
No 20
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.69 E-value=6.9e-16 Score=178.62 Aligned_cols=185 Identities=13% Similarity=0.103 Sum_probs=132.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCC
Q 004817 278 DIIPVTLIGIIGGILGGLYNHILHKVLRLYNL--------INQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSF 349 (729)
Q Consensus 278 ~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~ 349 (729)
.+...+++|+++|+++.+|.+++++..+++-. ....++++.++.++++|++++++.++.....
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~--------- 94 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGA--------- 94 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 35667899999999999999999998887421 2222333445666677777776554332210
Q ss_pred CCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchh
Q 004817 350 PETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 429 (729)
Q Consensus 350 ~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~ 429 (729)
.+. |.-+.+.....+ .+..++.. .+.|++.+.+|+|+|.+.|.+.
T Consensus 95 ------~~~-----------g~~~~~~~~~~~--------------~~~~~~~~----~~~k~~~~~l~i~~G~s~G~Eg 139 (574)
T PRK01862 95 ------RKG-----------GKTDYMEAVALG--------------DGVVPVRQ----SLWRSASSLLTIGSGGSIGREG 139 (574)
T ss_pred ------ccC-----------CcHHHHHHHHcC--------------CCCCChHH----HHHHHHHHHHHHHcCCCcCCcc
Confidence 011 111122211111 12233332 3459999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHh-CCcc--hHHHHHHHHHHHHHHHhh
Q 004817 430 PIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTVGDS 506 (729)
Q Consensus 430 Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Elt-g~~~--~~~p~lia~~va~~v~~~ 506 (729)
|++.+||++|..++++++.. ..+...+..+|+||.+++++|+|++++++.+|.+ ++++ .+.|+++++++|+.+++.
T Consensus 140 P~v~~ga~~~~~~~~~~~~~-~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~ 218 (574)
T PRK01862 140 PMVQLAALAASLVGRFAHFD-PPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMRE 218 (574)
T ss_pred hHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998532 3345678999999999999999999999999987 6654 588899999999998887
Q ss_pred c
Q 004817 507 F 507 (729)
Q Consensus 507 ~ 507 (729)
+
T Consensus 219 ~ 219 (574)
T PRK01862 219 F 219 (574)
T ss_pred H
Confidence 6
No 21
>cd01033 ClC_like Putative ClC chloride channel. Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.65 E-value=1e-15 Score=168.09 Aligned_cols=182 Identities=21% Similarity=0.219 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 113 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i 113 (729)
.+...+++|+++|+++.+|++.+.+.++++. ..++ +++. ..+.+++++.+ .++.|+..|+|.+.+
T Consensus 204 ~l~~~illGi~~Gl~~~lf~~~~~~~~~~~~--------~~~~---~~~~---~~l~gl~~g~~-~~~~p~~~G~G~~~i 268 (388)
T cd01033 204 LLIWALLAGPVLGVVAAGFRRLSQAARAKRP--------KGKR---ILWQ---MPLAFLVIGLL-SIFFPQILGNGRALA 268 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cccc---hHHH---HHHHHHHHHHH-HHHHHHHhCCcHHHH
Confidence 3457899999999999999999888776431 1111 1111 22334444543 356799999999888
Q ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHH
Q 004817 114 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 193 (729)
Q Consensus 114 ~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li 193 (729)
+..+++.... ..-...++.|++.+.+++++|+|+|.|+|++.+|+++|+.+++ .++ ...++.+.+.++
T Consensus 269 ~~~~~~~~~~-~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~----~~~-------~~~p~~~~~~~a 336 (388)
T cd01033 269 QLAFSTTLTL-SLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGI----VWN-------ALLPPLSIAAFA 336 (388)
T ss_pred HHHHcCCchH-HHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH----HHH-------HhCCcccHHHHH
Confidence 8887753211 1225677899999999999999999999999999999999997 222 111234567899
Q ss_pred HhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 004817 194 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 244 (729)
Q Consensus 194 ~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~ 244 (729)
.+||||++++++|||+++++|++|++.. +.+.+.|.++++.+++.+.+.
T Consensus 337 ~~GmaA~laa~~~aPlt~ivl~~Eltg~--~~~~l~Pl~ia~~~a~~vs~~ 385 (388)
T cd01033 337 LIGAAAFLAATQKAPLTALILVLEFTRQ--NPLFLIPLMLAVAGAVAVSRF 385 (388)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999752 346677888888888877764
No 22
>PRK05277 chloride channel protein; Provisional
Probab=99.61 E-value=4.5e-15 Score=165.99 Aligned_cols=187 Identities=16% Similarity=0.197 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 113 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i 113 (729)
.+...+++|+++|+++.+|+..+.+.++++.+. . .++...++ ....+.+++++.+. ++.|+..|+|.+.+
T Consensus 216 ~l~~~i~lGi~~G~~g~lf~~~~~~~~~~~~~~-----~-~~~~~~~~---~~~~i~gl~~g~l~-~~~p~~~g~G~~~i 285 (438)
T PRK05277 216 TLWLFLLLGIIFGIFGVLFNKLLLRTQDLFDRL-----H-GGNKKRWV---LMGGAVGGLCGLLG-LLAPAAVGGGFNLI 285 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c-ccccHHHH---HHHHHHHHHHHHHH-HHhhhhcCChHHHH
Confidence 345788999999999999999998887665432 1 11111221 22334445555544 56799999999999
Q ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHH
Q 004817 114 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 193 (729)
Q Consensus 114 ~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li 193 (729)
+..+++. .+.......++.|++.+.+++++|.++|.|+|++++|+++|..++. .++ .+++. ...+...++
T Consensus 286 ~~~~~~~-~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~----~~~---~~~p~--~~~~~~~~a 355 (438)
T PRK05277 286 PIALAGN-FSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGM----VAA---ALFPQ--YHIEPGTFA 355 (438)
T ss_pred HHHHcCC-chHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH----HHH---HHcCc--ccccHHHHH
Confidence 8887762 1111223457899999999999999999999999999999999886 211 12221 234567899
Q ss_pred HhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 004817 194 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLR 243 (729)
Q Consensus 194 ~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~ 243 (729)
.+||+|++++++|+|+++++|++|++.+ ...+.+.+++++++..+.+
T Consensus 356 ~~G~aA~la~~~~aPlt~~v~~~Eltg~---~~~l~p~lia~~~A~~v~~ 402 (438)
T PRK05277 356 IAGMGALFAATVRAPLTGIVLVLEMTDN---YQLILPLIITCLGATLLAQ 402 (438)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhCC---hhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998763 3455676667666666555
No 23
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.60 E-value=2.3e-14 Score=142.72 Aligned_cols=135 Identities=21% Similarity=0.277 Sum_probs=114.1
Q ss_pred ccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 004817 532 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 611 (729)
Q Consensus 532 l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~ 611 (729)
+.++++.|+|++ +++++++++++.++.+++.+++.+.+||+|++ .+++|+|+++|+.+......+.
T Consensus 242 ~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----------~rl~GiVt~~dl~~~a~~~p~q- 307 (382)
T COG3448 242 MGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----------RRLVGIVTQRDLLKHARPSPFQ- 307 (382)
T ss_pred hccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccc-----------cceeeeeeHHHHhhccCcchHH-
Confidence 457899999999 99999999999999999999999999999998 8999999999997633221110
Q ss_pred hcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeecc
Q 004817 612 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 691 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~ 691 (729)
.++ ++ ....++.+|+++..++.+|++..++.-+|.+.+.+++||+|+
T Consensus 308 ------------rlr---~~-----------------~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~- 354 (382)
T COG3448 308 ------------RLR---FL-----------------RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA- 354 (382)
T ss_pred ------------Hhh---cc-----------------CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-
Confidence 000 11 124578899999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEehhhhhhhhhhhhc
Q 004817 692 EAAGVSPVVGILTRQDLRAFNILTAF 717 (729)
Q Consensus 692 ~~~~~g~lvGiIT~~Dll~~~~~~~~ 717 (729)
+|+++||||..|++.+...+..
T Consensus 355 ----~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 355 ----AGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred ----CCcEEEEeeHHHHHHHHHHHHH
Confidence 8999999999999998776543
No 24
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.59 E-value=6.2e-15 Score=144.59 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=111.2
Q ss_pred ccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 004817 532 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 611 (729)
Q Consensus 532 l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~ 611 (729)
+-+.+|+++|++ ++.++.+++|++|+.+.|-+++.++.||+|+ ++++|+++.+|+..++....
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------------dk~vGiit~~dI~~aia~g~--- 231 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD------------DKIVGIITLSDIAKAIANGN--- 231 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC------------CceEEEEEHHHHHHHHHcCC---
Confidence 456789999999 9999999999999999999999999999998 59999999999988765432
Q ss_pred hcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeecc
Q 004817 612 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 691 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~ 691 (729)
...+++++|.++++++++|+.+.||+++|.+++..++.|+|.
T Consensus 232 -------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds- 273 (294)
T COG2524 232 -------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS- 273 (294)
T ss_pred -------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-
Confidence 124588999999999999999999999999999999999997
Q ss_pred ccCCCCcEEEEEehhhhhhhhh
Q 004817 692 EAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 692 ~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
+|+.+|+|||+|+++.+.
T Consensus 274 ----~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 274 ----NGKPVGIITRTDILTRIA 291 (294)
T ss_pred ----CCcEEEEEehHHHHHHhh
Confidence 799999999999998764
No 25
>cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel. The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore
Probab=99.55 E-value=8e-14 Score=153.66 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-------hccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCC
Q 004817 286 GIIGGILGGLYNHILHKVLRLYNLIN-------QKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGR 358 (729)
Q Consensus 286 Gi~~Gl~g~~f~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~ 358 (729)
|+++|+++.+|.++.++..+++.+.. ..++++..+.+++++++++.+....|.. .|.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~----------------~g~ 64 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPA----------------RGH 64 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcc----------------cCC
Confidence 68999999999999999998876542 1223445566677777777665543322 121
Q ss_pred CCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHH
Q 004817 359 SGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAY 438 (729)
Q Consensus 359 ~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~ 438 (729)
+++.+.....+. ....+. -..+.|++.+.+|+++|.++|.+.|++.+||++
T Consensus 65 ------------G~~~v~~~~~~~-------------~~~~~~----~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~ 115 (383)
T cd00400 65 ------------GIPEVIEAIALG-------------GGRLPL----RVALVKFLASALTLGSGGSVGREGPIVQIGAAI 115 (383)
T ss_pred ------------ChHHHHHHHHhC-------------CCCCCH----HHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Confidence 123222221110 111112 244679999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhCCcc---hHHHHHHHHHHHHHHHhhc
Q 004817 439 GRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLL---LLPITMIVLLIAKTVGDSF 507 (729)
Q Consensus 439 G~~~g~~~~~~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg~~~---~~~p~lia~~va~~v~~~~ 507 (729)
|..+++.++. ...+...++++||+|.+++++|+|++++++++|++++.. .+.|+++++++++.+++.+
T Consensus 116 g~~~~~~~~~-~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~ 186 (383)
T cd00400 116 GSWLGRRLRL-SRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL 186 (383)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998853 234567899999999999999999999999999997655 6899999999999999876
No 26
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.54 E-value=5e-14 Score=151.73 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=124.2
Q ss_pred CCchHHHHHHhcCCCC---CCCCCCCccc---ccchhcccccCCC--eeEecCcccHHHHHHHHhcCCCCeeeeecCCCC
Q 004817 508 NPSIYEIILELKGLPF---LDAHPEPWMR---TLTVGELIDAKPP--VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVV 579 (729)
Q Consensus 508 ~~sly~~~l~~~G~~~---~~~~~~~~l~---~~~v~dvm~~~~~--~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~ 579 (729)
..++|...+.++|... ...++...+. ..+|+|+|++ + ++++++++++.++.+.|.+.+...+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC--
Confidence 3477888888887765 6677888888 8999999998 6 9999999999999999988888899999987
Q ss_pred CCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccC
Q 004817 580 PPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 659 (729)
Q Consensus 580 ~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 659 (729)
++++|+|+.+|+.+.+..... ...+++++|++
T Consensus 240 ---------g~~iG~vt~~dl~~~~~~~~~---------------------------------------~~~~v~~im~~ 271 (321)
T PRK11543 240 ---------QQVQGVFTDGDLRRWLVGGGA---------------------------------------LTTPVNEAMTR 271 (321)
T ss_pred ---------CcEEEEecHHHHHHHHhCCCC---------------------------------------cCCcHHHhcCC
Confidence 899999999999764422100 01235678888
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhh
Q 004817 660 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 711 (729)
Q Consensus 660 ~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~ 711 (729)
++.++.+++++.++++.|.+++.+.+||+|+ +++++|+||++|++++
T Consensus 272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence 8999999999999999999999999999997 6899999999999864
No 27
>PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.52 E-value=1.3e-13 Score=152.62 Aligned_cols=183 Identities=21% Similarity=0.288 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 113 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i 113 (729)
.+...+++|+++|+++.+|.+.+.+.++++... ..+ .++ ...+.+++++.+. ++.|+..|.|.+.+
T Consensus 220 ~l~~~i~lGii~Gl~g~~f~~~~~~~~~~~~~~-----~~~----~~~----~~~lggli~g~l~-~~~p~~~G~G~~~i 285 (418)
T PRK01610 220 DYALIISTGLLAGLCGPLLLTLMNASHRGFVSL-----KLA----PPW----QLALGGLIVGLLS-LFTPAVWGNGYSVV 285 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-----ccc----hhH----HHHHHHHHHHHHH-HHhhHHhCCcHHHH
Confidence 345789999999999999999988876554322 011 111 1234455556554 44599999999888
Q ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhh-hhHH
Q 004817 114 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRD-RRDL 192 (729)
Q Consensus 114 ~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~-~r~l 192 (729)
+..+++.. .-.+-...++.|++.+.+++++|.++|.+.|++.+|+++|+.+++ .++. +++ +..+ .-.+
T Consensus 286 ~~~~~~~~-~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~----~~~~---~~~---~~~~~~~~~ 354 (418)
T PRK01610 286 QSFLTAPP-LLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGR----SLGL---WLP---DGEEITLLL 354 (418)
T ss_pred HHHHcCCh-hHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH----HHHH---hCC---CcccchHHH
Confidence 87776521 101112235789999999999999999999999999999999997 2221 111 1122 3446
Q ss_pred HHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 004817 193 ITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 244 (729)
Q Consensus 193 i~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~ 244 (729)
..+||+|.+++++|||++++++++|++.. | ..+.+.++++.+++.+.+.
T Consensus 355 a~vGmaA~laa~~~aPltaivl~~Eltg~-~--~~~~p~~ia~~ia~~vs~~ 403 (418)
T PRK01610 355 GLTGMATLLAATTHAPIMSTLMICEMTGE-Y--QLLPGLLIACVIASVISRT 403 (418)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHhCC-H--hHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999764 3 2355666666777666653
No 28
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.52 E-value=9.5e-14 Score=149.81 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=122.5
Q ss_pred CCchHHHHHHhcCCCC---CCCCCCCcc---cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCC
Q 004817 508 NPSIYEIILELKGLPF---LDAHPEPWM---RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 581 (729)
Q Consensus 508 ~~sly~~~l~~~G~~~---~~~~~~~~l---~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~ 581 (729)
..++|...+.++|... ...++...+ ..++|+|+|.+..+++++++++++.++.+.|.+.+++.+||+|++
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---- 244 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---- 244 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----
Confidence 4578888888888766 666777777 889999999743368899999999999999988887777888876
Q ss_pred CCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCC
Q 004817 582 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 661 (729)
Q Consensus 582 ~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 661 (729)
++++|+|+.+|+.+.+.... . . ...+++++|.+++
T Consensus 245 -------g~lvGivt~~Dl~~~~~~~~-~-------------------~------------------~~~~v~~im~~~~ 279 (326)
T PRK10892 245 -------MKIEGIFTDGDLRRVFDMGI-D-------------------L------------------RQASIADVMTPGG 279 (326)
T ss_pred -------CcEEEEEecHHHHHHHhcCC-C-------------------c------------------ccCCHHHhcCCCC
Confidence 89999999999976432210 0 0 0134678888899
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhh
Q 004817 662 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 711 (729)
Q Consensus 662 ~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~ 711 (729)
.++.+++++.++++.|.+++.+++||+|+ ++++|+||++|+++.
T Consensus 280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~~------~~lvGiit~~dil~~ 323 (326)
T PRK10892 280 IRVRPGILAVDALNLMQSRHITSVLVADG------DHLLGVLHMHDLLRA 323 (326)
T ss_pred EEECCCCCHHHHHHHHHHCCCcEEEEeeC------CEEEEEEEhHHhHhc
Confidence 99999999999999999999999999986 889999999999874
No 29
>cd01031 EriC ClC chloride channel EriC. This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter.
Probab=99.51 E-value=2.3e-13 Score=150.77 Aligned_cols=177 Identities=15% Similarity=0.187 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchh---hHHHHHHHHHHHhhhhh-ccccccccCCCCCCCCCCCCCCC
Q 004817 285 IGIIGGILGGLYNHILHKVLRLYNLINQK---GKMH---KLLLALSVSVFTSVCQY-CLPFLADCKACDPSFPETCPTNG 357 (729)
Q Consensus 285 lGi~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~gl~~~~i~~-~~p~~~~~~~~~~~~~~~~p~~g 357 (729)
+|+++|+++.+|.++++++.+++...... .+.+ .++.+.++|++.+.+.. +.|+. .|
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~----------------~g 64 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEA----------------KG 64 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcc----------------CC
Confidence 48899999999999999999887553321 1111 12333445555544432 23443 12
Q ss_pred CCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHH
Q 004817 358 RSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSA 437 (729)
Q Consensus 358 ~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~ 437 (729)
. +++.+... ++... ... ..-.++.|++.+.+|+++|.++|.+.|++.+||+
T Consensus 65 ~------------G~~~v~~~------------l~~~~--~~~---~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ 115 (402)
T cd01031 65 S------------GIPQVEGV------------LAGLL--PPN---WWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAA 115 (402)
T ss_pred C------------CHHHHHHH------------HcCCC--Ccc---cHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Confidence 1 23333332 22111 111 1224467999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCccHHHHHHHHHhhhhhhccchhHHHHHHHH-HhCCcc--hHHHHHHHHHHHHHHHhhc
Q 004817 438 YGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE-LTNNLL--LLPITMIVLLIAKTVGDSF 507 (729)
Q Consensus 438 ~G~~~g~~~~~~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~E-ltg~~~--~~~p~lia~~va~~v~~~~ 507 (729)
+|..+++.++.. ..+...++.+||+|.+++++|+|++++++.+| ++++++ .+.|+++++++|+.+++.+
T Consensus 116 ig~~~~~~~~~~-~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 116 IGQGVSKWFKTS-PEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988542 34567899999999999999999999999999 667765 6899999999999988765
No 30
>cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins. This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge.
Probab=99.50 E-value=4.1e-13 Score=147.35 Aligned_cols=170 Identities=19% Similarity=0.242 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCCHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCF-APTAAGPGIPE 112 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~p~~~g~Gi~~ 112 (729)
.+...+++|+++|+++.+|++.+.++++++.+. ... .++ .+++.+++++.+.... .|+..|.|.+.
T Consensus 199 ~l~~~i~~Gi~~gl~g~~f~~~~~~~~~~~~~~-----~~~----~~~----~~~iggl~~g~~~~~~~~~~~~G~g~~~ 265 (378)
T cd03682 199 LFVKVILAGIIFGLAGRLFAELLHFLKKLLKKR-----IKN----PYL----RPFVGGLLIILLVYLLGSRRYLGLGTPL 265 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cCC----cHH----HHHHHHHHHHHHHHHhcCCccccCCHHH
Confidence 345789999999999999999999887765432 011 121 2233445555554333 35567889888
Q ss_pred HHHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHH
Q 004817 113 IKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDL 192 (729)
Q Consensus 113 i~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l 192 (729)
++..+.+ +..+....+.|++.+.+++++|.++|.+.|++.+|+++|+.+++ +++. +...+
T Consensus 266 i~~~~~~----~~~~~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~-----------~~~~-----~~~~~ 325 (378)
T cd03682 266 IEDSFFG----GTVYPYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP-----------ILGL-----PVSLL 325 (378)
T ss_pred HHHHHhc----CCchHHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH-----------HHCC-----CHHHH
Confidence 8763332 23456678999999999999999999999999999999999997 3321 23578
Q ss_pred HHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Q 004817 193 ITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVV 240 (729)
Q Consensus 193 i~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~ 240 (729)
+.+||+|.+++++|+|++++++++|++.. ..+.+.++++.+++.
T Consensus 326 ~~~Gmaa~laa~~raPlt~ivl~~Eltg~----~~~~p~~ia~~ia~~ 369 (378)
T cd03682 326 AALGFVAVFAGATNTPLACIIMGIELFGA----ENAPYFFIACLVAYL 369 (378)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhCc----cchHHHHHHHHHHHH
Confidence 99999999999999999999999999872 234455445444443
No 31
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.50 E-value=1e-13 Score=126.23 Aligned_cols=123 Identities=24% Similarity=0.358 Sum_probs=105.3
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 612 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~ 612 (729)
..++++++|.. +++.+++++++.+++++|++++++.+||+++ ++++|-|+.+++.+.+.... +
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------------~k~VGsItE~~iv~~~le~~---e 125 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE------------DKVVGSITENDIVRALLEGM---E 125 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC------------CeeeeeecHHHHHHHHhccc---c
Confidence 56889999999 9999999999999999999999999999998 69999999999988764421 0
Q ss_pred cccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccc
Q 004817 613 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 692 (729)
Q Consensus 613 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~ 692 (729)
. + ....++++|..+.++|++|+++..+.+++..++. +.|+++
T Consensus 126 ~----------------i------------------~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e~-- 167 (187)
T COG3620 126 S----------------I------------------RSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVEN-- 167 (187)
T ss_pred c----------------h------------------hhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEeC--
Confidence 0 0 1245788898888999999999999999988765 778865
Q ss_pred cCCCCcEEEEEehhhhhhhhhh
Q 004817 693 AAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 693 ~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
|+++||||+.|+++....
T Consensus 168 ----G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 168 ----GKVVGIITKADIMKLLAG 185 (187)
T ss_pred ----CceEEEEeHHHHHHHHhc
Confidence 999999999999987654
No 32
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=5.1e-12 Score=115.25 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=93.2
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+...+..++.... ..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----------~~~~Giv~~~dl~~~~~~~~~~~~-----------~~ 59 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-----------GKVVDVYSRFDVINLAKEGAYNNL-----------DL 59 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEeHHHHHHHHhcCccccc-----------cC
Confidence 57889999999999999999999999999877 899999999999875533221000 00
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
+..+ .+...+.|..++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 60 ~~~~--------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~ 114 (120)
T cd04641 60 TVGE--------------------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISL 114 (120)
T ss_pred CHHH--------------------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEH
Confidence 0000 01123445567789999999999999999999999999998 6899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 115 ~di~~ 119 (120)
T cd04641 115 SDILQ 119 (120)
T ss_pred HHhhc
Confidence 99976
No 33
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=5.2e-12 Score=114.13 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=93.4
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
.+.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~dl~~~~~~~~~~--------------- 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----------GKLAGVLTKTDVVRQMGRCGGP--------------- 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence 36788999999999999999999999999887 8999999999997644221000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
....+++++|++++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 56 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~ 108 (114)
T cd04619 56 ----------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNA 108 (114)
T ss_pred ----------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEh
Confidence 0112356677788889999999999999999999999999997 6899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04619 109 RDALK 113 (114)
T ss_pred Hhhcc
Confidence 99875
No 34
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.37 E-value=4.9e-12 Score=113.75 Aligned_cols=109 Identities=14% Similarity=0.195 Sum_probs=91.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+|+..|+.+.....+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~----------------- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----------NKVLGQVTLSDLLEIGPNDY----------------- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHhhccccc-----------------
Confidence 46788999999999999988888899999887 89999999999965211000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...+++++|..++.++.+++++.+++++|.+++.+.+||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~ 105 (111)
T cd04603 54 -----------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYE 105 (111)
T ss_pred -----------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEh
Confidence 012356677778889999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04603 106 RELLR 110 (111)
T ss_pred HHhhc
Confidence 99975
No 35
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.35 E-value=5.2e-12 Score=139.52 Aligned_cols=129 Identities=18% Similarity=0.231 Sum_probs=108.9
Q ss_pred cccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 004817 531 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 610 (729)
Q Consensus 531 ~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~ 610 (729)
.+++.+|+|+|+++.++++++.+++++++.+.+.+++|+.+||++++ .++++|+++.+|++..+..+
T Consensus 187 ~l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~----------~d~ivGiv~~kDll~~~~~~--- 253 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKET----------IDNITGVLYIKDLLPHLNKK--- 253 (408)
T ss_pred ccCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCC----------CCceEEEEEHHHHHhHhccC---
Confidence 35788999999998899999999999999999999999999999864 26899999999997532210
Q ss_pred hhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeec
Q 004817 611 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~ 690 (729)
..+++++|+ ++.+|++++++.++++.|++.+.+..+|+|+
T Consensus 254 ---------------------------------------~~~l~~~~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE 293 (408)
T TIGR03520 254 ---------------------------------------NFDWQSLLR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDE 293 (408)
T ss_pred ---------------------------------------CCCHHHHcC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcC
Confidence 012344554 5789999999999999999999999999998
Q ss_pred cccCCCCcEEEEEehhhhhhhhhhhhc
Q 004817 691 YEAAGVSPVVGILTRQDLRAFNILTAF 717 (729)
Q Consensus 691 ~~~~~~g~lvGiIT~~Dll~~~~~~~~ 717 (729)
.|.++|+||.+|+++....+..
T Consensus 294 -----~G~~~GiVT~eDileeivgei~ 315 (408)
T TIGR03520 294 -----YGGTSGLVTLEDIIEEIVGDIS 315 (408)
T ss_pred -----CCCEEEEEEHHHHHHHHhCCCC
Confidence 7889999999999999876543
No 36
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.35 E-value=2.6e-12 Score=131.30 Aligned_cols=134 Identities=21% Similarity=0.315 Sum_probs=115.7
Q ss_pred CCchHHHHHHhcCCCCCCCCCCCcccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCC
Q 004817 508 NPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANV 587 (729)
Q Consensus 508 ~~sly~~~l~~~G~~~~~~~~~~~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~ 587 (729)
++.+|+.+++. +-++|+|+|.|..+..++++++++++..++-.+++|+.|||+|..
T Consensus 175 N~Al~n~lIKk--------------dI~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~---------- 230 (432)
T COG4109 175 NKALSNQLIKK--------------DIITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS---------- 230 (432)
T ss_pred HHHHHHhhhhh--------------heeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc----------
Confidence 44667776654 236899999977789999999999999999999999999999988
Q ss_pred CceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCC
Q 004817 588 ATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES 667 (729)
Q Consensus 588 ~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~ 667 (729)
.+++|+++.+|+...- ...++..+|+++|.++.+.
T Consensus 231 -~kvvGvVt~rDv~~~~--------------------------------------------~~t~ieKVMtknp~tv~~~ 265 (432)
T COG4109 231 -MKVVGVVTMRDVLDKK--------------------------------------------PSTTIEKVMTKNPITVRAK 265 (432)
T ss_pred -ceEEEEEEehhhhcCC--------------------------------------------CCccHHHHhccCCeeeccc
Confidence 8999999999994310 1234667899999999999
Q ss_pred CCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhh
Q 004817 668 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 715 (729)
Q Consensus 668 ~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~ 715 (729)
++++.+.+.|.=.+++.+||+|+ +.+++|+|||+|+++.+...
T Consensus 266 tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq~~ 308 (432)
T COG4109 266 TSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQMI 308 (432)
T ss_pred chHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHHHh
Confidence 99999999999999999999999 89999999999999976653
No 37
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.34 E-value=3.3e-12 Score=142.52 Aligned_cols=145 Identities=20% Similarity=0.203 Sum_probs=118.0
Q ss_pred CchHHHHHHhcCCCCCCCC-----CCCcccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCC
Q 004817 509 PSIYEIILELKGLPFLDAH-----PEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG 583 (729)
Q Consensus 509 ~sly~~~l~~~G~~~~~~~-----~~~~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~ 583 (729)
..++..+.++.|+-..+.. ....++.++++++|.+ +++++++++++.++.+.|.+++++.+||+|++
T Consensus 58 ~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~------ 129 (479)
T PRK07807 58 RRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEE------ 129 (479)
T ss_pred HHHHHHHHHCCCceEeeCCCCHHHHHHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCC------
Confidence 4566666655544333322 2245778899999998 99999999999999999999999999999987
Q ss_pred CCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCce
Q 004817 584 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT 663 (729)
Q Consensus 584 ~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~ 663 (729)
++++|+|+.+|+... . ...+++++|++++.+
T Consensus 130 -----gklvGIVT~rDL~~~----~----------------------------------------~~~~V~diMt~~~it 160 (479)
T PRK07807 130 -----GRPVGVVTEADCAGV----D----------------------------------------RFTQVRDVMSTDLVT 160 (479)
T ss_pred -----CeEEEEEeHHHHhcC----c----------------------------------------cCCCHHHhccCCceE
Confidence 899999999998321 0 002366788889999
Q ss_pred ecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhh
Q 004817 664 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 715 (729)
Q Consensus 664 v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~ 715 (729)
+++++++.+++++|.+++.+.+||+|+ +++++|+||++|+++.....
T Consensus 161 V~~d~sL~eAl~lM~~~~i~~LPVVD~-----~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 161 LPAGTDPREAFDLLEAARVKLAPVVDA-----DGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred ECCCCcHHHHHHHHHhcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhCC
Confidence 999999999999999999999999997 78999999999999866654
No 38
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.32 E-value=8.6e-12 Score=131.53 Aligned_cols=130 Identities=18% Similarity=0.335 Sum_probs=107.3
Q ss_pred ccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 004817 532 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 611 (729)
Q Consensus 532 l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~ 611 (729)
+...+|+++|.++.++.+++++++++++.+.+.+++++.+||++++ .++++|+++.+|++..+....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~----------~d~iiGiv~~kDll~~~~~~~--- 130 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISED----------KDHIEGILMAKDLLPFMRSDA--- 130 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCC----------CCcEEEEEEHHHHHhHhhccC---
Confidence 5677999999987779999999999999999999999999999763 168999999999975432100
Q ss_pred hcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeecc
Q 004817 612 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 691 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~ 691 (729)
. ..+++++|.+ +.++++++++.++++.|++.+.+.+||+|+
T Consensus 131 -~------------------------------------~~~l~~l~r~-~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe- 171 (292)
T PRK15094 131 -E------------------------------------AFSMDKVLRQ-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE- 171 (292)
T ss_pred -C------------------------------------cCCHHHHcCC-CcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-
Confidence 0 0123455644 558999999999999999999999999998
Q ss_pred ccCCCCcEEEEEehhhhhhhhhhhhc
Q 004817 692 EAAGVSPVVGILTRQDLRAFNILTAF 717 (729)
Q Consensus 692 ~~~~~g~lvGiIT~~Dll~~~~~~~~ 717 (729)
.|.++|+||++|+++.+..+..
T Consensus 172 ----~G~viGiVTleDIle~ivGei~ 193 (292)
T PRK15094 172 ----FGGVSGLVTIEDILELIVGEIE 193 (292)
T ss_pred ----CCCEEEEeEHHHHHHHHhCCCc
Confidence 7889999999999998887543
No 39
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.32 E-value=1.3e-11 Score=108.70 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=83.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
.++++++++++.++.+.|.+.+++++||+|++ +++++|+++.+|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------~~~~~Givt~~Dl~~~~--------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----------KQQFVGMLTITDFILIL--------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----------CCEEEEEEEHHHHhhhe---------------------
Confidence 57899999999999999999999999999862 17899999999995411
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCC-CcEEEEEe
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILT 704 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~-g~lvGiIT 704 (729)
. +.++.+++++.+++++|.+++.+++||+|+ + |+++|+||
T Consensus 51 --------------------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~~giit 91 (98)
T cd04618 51 --------------------------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP-----STGTGLYILT 91 (98)
T ss_pred --------------------------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-----CCCCceEEee
Confidence 0 457999999999999999999999999997 5 89999999
Q ss_pred hhhhhh
Q 004817 705 RQDLRA 710 (729)
Q Consensus 705 ~~Dll~ 710 (729)
++|+++
T Consensus 92 ~~d~~~ 97 (98)
T cd04618 92 SRRILK 97 (98)
T ss_pred hhhhhc
Confidence 999975
No 40
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.30 E-value=2.2e-11 Score=110.02 Aligned_cols=113 Identities=24% Similarity=0.278 Sum_probs=92.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~~~--------------- 55 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----------GGVVGIITLPDLLRALEADEAG--------------- 55 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----------CCEEEEEEHHHHHHHHhccccc---------------
Confidence 56788999999999999998889999999987 8999999999997654321100
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
....++++|.+++.++.+++++.+++++|.+++.+.+||+|+ .+.|+++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~---~~~~~~~Gvit~ 109 (115)
T cd04593 56 -----------------------EPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR---GNPGQVLGLLTR 109 (115)
T ss_pred -----------------------ccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC---CCCCeEEEEEEh
Confidence 011245667788889999999999999999999999999987 112789999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 110 ~di~~ 114 (115)
T cd04593 110 ENVLL 114 (115)
T ss_pred HHhhc
Confidence 99986
No 41
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.29 E-value=2.2e-11 Score=111.42 Aligned_cols=121 Identities=21% Similarity=0.273 Sum_probs=95.9
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+........ ....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~~~---------~~~~ 62 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----------RRLVGIVTQRDLLRHARPDGRRPL---------RGRL 62 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----------CCEEEEEEHHHHHhhhcccccchh---------hhhh
Confidence 67889999999999999998888999999886 899999999999765432110000 0000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
+ ......++.++|++++.++++++++.+++++|.+.+.+.+||+|+ +|+++|+||+
T Consensus 63 ~-------------------~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~ 118 (124)
T cd04600 63 R-------------------GRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQ 118 (124)
T ss_pred h-------------------cccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEh
Confidence 0 001224567888888999999999999999999999999999997 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 119 ~di~~ 123 (124)
T cd04600 119 TDLIA 123 (124)
T ss_pred HHhhc
Confidence 99976
No 42
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.28 E-value=2.7e-11 Score=110.12 Aligned_cols=111 Identities=21% Similarity=0.179 Sum_probs=90.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+..++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+....... .
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~Givt~~dl~~~~~~~~~-~-------------- 55 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----------GDLVGVVSRKDLLKASIGGAD-L-------------- 55 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHcCCC-c--------------
Confidence 56789999999999999988888999999987 899999999999775432110 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCC---CcEE
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV---SPVV 700 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~---g~lv 700 (729)
....+.++|.+ .+.++++++++.+++++|.+++.+.+||+|+ + ++++
T Consensus 56 -----------------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-----~~~~~~l~ 107 (118)
T cd04617 56 -----------------------QKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-----VDEGLEVI 107 (118)
T ss_pred -----------------------cCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-----CCccceEE
Confidence 01224456653 5679999999999999999999999999997 4 6899
Q ss_pred EEEehhhhhh
Q 004817 701 GILTRQDLRA 710 (729)
Q Consensus 701 GiIT~~Dll~ 710 (729)
|+||++|+++
T Consensus 108 Gvit~~~l~~ 117 (118)
T cd04617 108 GRITKTNITK 117 (118)
T ss_pred EEEEhhheec
Confidence 9999999875
No 43
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.28 E-value=3.1e-11 Score=108.12 Aligned_cols=109 Identities=27% Similarity=0.319 Sum_probs=92.0
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+|+..|+.+.+.... .
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~--~-------------- 54 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----------GHLVGLLTRDDLIRALAEGG--P-------------- 54 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----------CcEEEEeeHHHHHHHHHhcC--C--------------
Confidence 56788999999999999988888899999987 89999999999976543211 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..++.++|+.++..+++++++.++++.|.+++.+.+||+|+ +++++|++|+
T Consensus 55 ------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 105 (111)
T cd04639 55 ------------------------DAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTL 105 (111)
T ss_pred ------------------------CCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEH
Confidence 01355667778889999999999999999999999999987 6899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+.+
T Consensus 106 ~dl~~ 110 (111)
T cd04639 106 ENVGE 110 (111)
T ss_pred HHhhc
Confidence 99875
No 44
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.27 E-value=2.3e-11 Score=137.48 Aligned_cols=152 Identities=15% Similarity=0.167 Sum_probs=118.1
Q ss_pred HHHhhcCCchHHHHHHhcCCCCCCC-CCCCcccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCC
Q 004817 502 TVGDSFNPSIYEIILELKGLPFLDA-HPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVP 580 (729)
Q Consensus 502 ~v~~~~~~sly~~~l~~~G~~~~~~-~~~~~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~ 580 (729)
...+++..-+++.|+..+|+...+. ...+.++.++++++|.+ ++.++++++++.++.+.|.+.+++.+||+|++
T Consensus 301 ~g~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~--- 375 (454)
T TIGR01137 301 SIRNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEA--- 375 (454)
T ss_pred CCccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC---
Confidence 3345556666778999888643322 23355889999999998 89999999999999999998888999999887
Q ss_pred CCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCC
Q 004817 581 PSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT 660 (729)
Q Consensus 581 ~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~ 660 (729)
++++|+|+.+|+.+.+...... ...++.++|+++
T Consensus 376 --------~~~~Givt~~dl~~~~~~~~~~--------------------------------------~~~~v~~im~~~ 409 (454)
T TIGR01137 376 --------GKVLGSVTLRELLSALFAGKAN--------------------------------------PDDAVSKVMSKK 409 (454)
T ss_pred --------CeEEEEEEHHHHHHHHhccCCC--------------------------------------cCCCHHHhcCCC
Confidence 8999999999997754321100 012356778788
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 712 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~ 712 (729)
+.++++++++.++.+.|.+.+ .+||++ +++++|+||++|+++.+
T Consensus 410 ~~~v~~~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 410 FIQIGEGEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CeEECCcCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence 889999999999999998864 355555 58999999999999864
No 45
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.27 E-value=3.8e-11 Score=108.33 Aligned_cols=112 Identities=13% Similarity=0.252 Sum_probs=91.8
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++++.|.+.+++.+||+|++ .++++|+++.+|+++.+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~----------~~~~~G~v~~~dl~~~~~~~~~~~-------------- 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRR----------ESDAYGIVTMRDILKKVVAEGRDP-------------- 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECC----------CCcEEEEEehHHHHHHHHhCCCCC--------------
Confidence 67889999999999999988888999999862 168999999999987553211000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 58 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~Gvi~~ 108 (114)
T cd04630 58 -----------------------DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN------NELIGIISL 108 (114)
T ss_pred -----------------------CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------CEEEEEEEH
Confidence 012355677778889999999999999999999999999986 889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04630 109 TDIFL 113 (114)
T ss_pred HHhhc
Confidence 99975
No 46
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=4.9e-11 Score=106.59 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=91.2
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++++.+.+++++.+||+|++ ++++|+++.+|+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~----------------- 54 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDED-----------GRLVGIVTSWDISKAVARDK----------------- 54 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----------CcEEEEEeHHHHHHHHhhCc-----------------
Confidence 67789999999999999998888999999887 89999999999976432110
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
.++.++|.+++.++++++++.++++.|.+.+.+.+||+++ +|+++|+||+
T Consensus 55 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~ 104 (110)
T cd04605 55 -------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITS 104 (110)
T ss_pred -------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEH
Confidence 1144556677889999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
.|+++
T Consensus 105 ~di~~ 109 (110)
T cd04605 105 EDISK 109 (110)
T ss_pred HHhhh
Confidence 99865
No 47
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.27 E-value=1.8e-11 Score=137.42 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=111.8
Q ss_pred CCchHHHHHHhcCCCCCCCC-C-CCccc-ccchhcccccC-CCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCC
Q 004817 508 NPSIYEIILELKGLPFLDAH-P-EPWMR-TLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG 583 (729)
Q Consensus 508 ~~sly~~~l~~~G~~~~~~~-~-~~~l~-~~~v~dvm~~~-~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~ 583 (729)
+..+.-.+++.+|+.+.+.. . +...+ -.+|+++|... .+..++++++++.++.+.|.+++++.+||+|++
T Consensus 64 gdalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~------ 137 (502)
T PRK07107 64 DDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG------ 137 (502)
T ss_pred hHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC------
Confidence 45666667777777653321 1 11111 23578888521 144689999999999999999999999999862
Q ss_pred CCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccC--CC
Q 004817 584 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TP 661 (729)
Q Consensus 584 ~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~ 661 (729)
+++++++|+||..|+.... .. ...+++++|++ ++
T Consensus 138 --~~~gkLvGIVT~~DLr~~~--~~----------------------------------------~~~~V~dIMt~~~~~ 173 (502)
T PRK07107 138 --TAHGKLLGIVTSRDYRISR--MS----------------------------------------LDTKVKDFMTPFEKL 173 (502)
T ss_pred --CcCCEEEEEEEcHHhhccc--cC----------------------------------------CCCCHHHHhCCCCCe
Confidence 1238999999999985310 00 11346677875 66
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhh
Q 004817 662 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 712 (729)
Q Consensus 662 ~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~ 712 (729)
.++++++++.+++++|.+++.+.+||+|+ +++++|+||++|+++..
T Consensus 174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 174 VTANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence 78899999999999999999999999998 78999999999999854
No 48
>cd03685 ClC_6_like ClC-6-like chloride channel proteins. This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals.
Probab=99.27 E-value=3.6e-11 Score=135.18 Aligned_cols=187 Identities=17% Similarity=0.171 Sum_probs=122.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhccchhh----HHHHHHHHHHHhhhhh-ccccccccCC
Q 004817 275 HVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLI-----NQKGKMHK----LLLALSVSVFTSVCQY-CLPFLADCKA 344 (729)
Q Consensus 275 ~~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~gl~~~~i~~-~~p~~~~~~~ 344 (729)
....+...+++|+++|+++.+|.+++.++.+++... .......+ +..+++++++.+++.. +.|+.
T Consensus 29 ~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a----- 103 (466)
T cd03685 29 EFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTA----- 103 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----
Confidence 345566779999999999999999999998874321 11111111 1344445555555543 22433
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCC-cchhHHHHHHHHHHHHHHHHhcCCC
Q 004817 345 CDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTE-FQPSSILIFFILYCILGLITFGIAV 423 (729)
Q Consensus 345 ~~~~~~~~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~ll~~~~lk~~~t~lt~g~G~ 423 (729)
.|. | ... ++..++...... .++. .++.|++.+.+++|+|.
T Consensus 104 -----------~Gs-G-----------ip~------------v~~~l~g~~~~~~l~~r----~~~~K~i~~~l~vgsG~ 144 (466)
T cd03685 104 -----------AGS-G-----------IPE------------VKGYLNGVKIPHILRLK----TLLVKIVGVILSVSGGL 144 (466)
T ss_pred -----------CCC-C-----------HHH------------HHHHHcCcCccccchHH----HHHHHHHHHHHHHhcCC
Confidence 121 1 222 222222111111 1122 23579999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHhh-----------c-cCCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhC-Cc--c
Q 004817 424 PSGLFLPIILMGSAYGRLLGMAMG-----------S-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NL--L 488 (729)
Q Consensus 424 ~GG~f~Psl~iGa~~G~~~g~~~~-----------~-~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg-~~--~ 488 (729)
|.|.+.|++.+||++|..+++... . ....+...+..+||||.+++++|+|++++++++|.++ .+ +
T Consensus 145 s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~ 224 (466)
T cd03685 145 ALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQA 224 (466)
T ss_pred CCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchh
Confidence 999999999999999999997431 1 1123456799999999999999999999999999886 22 3
Q ss_pred hHHHHHHHHHHHHHHHh
Q 004817 489 LLPITMIVLLIAKTVGD 505 (729)
Q Consensus 489 ~~~p~lia~~va~~v~~ 505 (729)
...+.++++++|..+++
T Consensus 225 ~~~~~l~~s~ias~va~ 241 (466)
T cd03685 225 LTWRTFFSSMIVTFTLN 241 (466)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555554
No 49
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.26 E-value=3e-11 Score=107.88 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=90.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++++++++.+.|.+.+++.+||+|++ ++++|+++..|+.... .
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~------~-------------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----------NKVVGIVTSKDVAGKD------P-------------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----------CeEEEEecHHHHhccc------c--------------
Confidence 67899999999999999998888899999887 8999999999995310 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..+++++|++.+.++++++++.++.+.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 52 ------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 102 (108)
T cd04596 52 ------------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISR 102 (108)
T ss_pred ------------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEH
Confidence 01245566677889999999999999999999999999997 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 103 ~di~~ 107 (108)
T cd04596 103 QDVLK 107 (108)
T ss_pred HHhhc
Confidence 99975
No 50
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=5.1e-11 Score=106.80 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=92.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~~-------------- 56 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----------GRLVGIFSERDIVRKVALRGASA-------------- 56 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEehHHHHHHHhhcCCCc--------------
Confidence 56788999999999999998889999999887 89999999999977543211000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|++++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 57 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------~~~~Gvit~ 107 (113)
T cd04623 57 -----------------------LDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG------GKLVGIVSI 107 (113)
T ss_pred -----------------------cccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------CEEEEEEEH
Confidence 012456677778889999999999999999999999999986 889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04623 108 GDVVK 112 (113)
T ss_pred HHhhc
Confidence 99975
No 51
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=3.4e-11 Score=108.33 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=92.0
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+........
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~~------------- 57 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----------GNLVGFLSEQDCLKQLLESSYHCD------------- 57 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----------CeEEEEeehHHHHHHhhhhhhccC-------------
Confidence 56789999999999999988888889999887 899999999999765432110000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|++++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 58 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvit~ 108 (114)
T cd04629 58 -----------------------GVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------GKLVGQISR 108 (114)
T ss_pred -----------------------CCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC------CEEEEEEEH
Confidence 012355677778889999999999999999999999999986 789999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04629 109 RDVLR 113 (114)
T ss_pred HHHhc
Confidence 99975
No 52
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=5.4e-11 Score=107.04 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=91.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
...++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 55 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-----------GRLLGTVTDGDIRRALLKGLS---------------- 55 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----------CCEEEEEEcHHHHHHHhcCCC----------------
Confidence 35678999999999999988888899999887 899999999999764432110
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|++++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 107 (113)
T cd04607 56 -----------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE-----EGRVVGLATL 107 (113)
T ss_pred -----------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEh
Confidence 012355667777889999999999999999999999999997 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|++.
T Consensus 108 ~di~~ 112 (113)
T cd04607 108 DDLLS 112 (113)
T ss_pred HHhcc
Confidence 99975
No 53
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=6.2e-11 Score=106.32 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=92.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++++++++.+.|.+.+++.+||+|++ ++++|+++.+|+++.+.... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~l~~~~~~~~-~--------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----------ERPIGIVTERDIVRAVAAGI-D--------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEeeHHHHHHHHhccC-C---------------
Confidence 56788999999999999988889999999987 89999999999976543211 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...+++++|++++..+.+++++.++++.|.+.+...+||+|+ +|++.|++|+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~ 106 (112)
T cd04624 55 -----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISI 106 (112)
T ss_pred -----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEH
Confidence 012355667788889999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04624 107 RDLVR 111 (112)
T ss_pred HHhcc
Confidence 99975
No 54
>PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease.; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A ....
Probab=99.25 E-value=8.3e-11 Score=128.19 Aligned_cols=186 Identities=22% Similarity=0.300 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccC--CCCCCHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPT--AAGPGIP 111 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~--~~g~Gi~ 111 (729)
.+...+++|+++|+++.+|++...++.+++.... ..+. ..++ .+++.+++.+.+. ++.|+ ..|.|..
T Consensus 163 ~~~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~-----~~~~-~~~l----~~~i~gl~~g~l~-~~~p~~~~~g~G~~ 231 (355)
T PF00654_consen 163 ELPLFLLLGIICGLLGALFNRLLRWLRKFFRKLK-----RLKI-PPIL----RPVIGGLVIGLLA-FFFPEGSVLGSGYE 231 (355)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCH-HHHH----HHHHHHHHHHHHH-HSSGG-SGSSSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccc-chHH----HHHHHHHHHHHHH-HHHhhhcccCCcHH
Confidence 4557999999999999999999999887655431 0000 0111 3334445555444 56687 9999988
Q ss_pred HHHHHHhCCCCCCccch----hHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChh
Q 004817 112 EIKAYLNGVDTPNMFGA----TTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDR 187 (729)
Q Consensus 112 ~i~~~l~g~~~~~~l~~----~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~ 187 (729)
.++..+++.. ...+. ...+.|++.+.+++++|.++|...|+..+|+++|..++. .++. .++- ....
T Consensus 232 ~i~~ll~~~~--~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~~~----~~~~---~~~~-~~~~ 301 (355)
T PF00654_consen 232 LIQSLLSGSP--PWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLFGA----LLGS---FFPG-ISSV 301 (355)
T ss_dssp HHHHHCTT------S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHHHH----HHHH---H-GG-G-T-
T ss_pred HHHHHHcCCc--chhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHHHH----HHHh---hCCC-cCCC
Confidence 8988876531 12233 346789999999999999999999999999999999997 2221 1110 0011
Q ss_pred hhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 004817 188 DRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLR 243 (729)
Q Consensus 188 ~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~ 243 (729)
+...+..+||+|.++++.|+|++++++.+|++.+ .+.+.+.++++.++..+.+
T Consensus 302 ~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~---~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 302 DPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGD---FQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999983 3455666666666666544
No 55
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=5.1e-11 Score=107.37 Aligned_cols=109 Identities=23% Similarity=0.309 Sum_probs=88.1
Q ss_pred CeeEecCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 624 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 624 (729)
++.++++++++.++.+.|.+.+ .+.+||+|++ ++++|+++.+|+........
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~---------------- 54 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----------GRYVGIISLADLRAIPTSQW---------------- 54 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----------CcEEEEEEHHHHHHHHHhhc----------------
Confidence 5778999999999999886654 7889999887 89999999999976432110
Q ss_pred hhhHHhhhhcCcccccccChhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEE
Q 004817 625 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 702 (729)
Q Consensus 625 ~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGi 702 (729)
...++.++|++ .+.++.+++++.++++.|.+.+.+.+||+|+ +++++|+
T Consensus 55 ------------------------~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gv 105 (114)
T cd04801 55 ------------------------AQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGL 105 (114)
T ss_pred ------------------------cccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEE
Confidence 00124455543 2558999999999999999999999999987 7899999
Q ss_pred Eehhhhhh
Q 004817 703 LTRQDLRA 710 (729)
Q Consensus 703 IT~~Dll~ 710 (729)
+|++|+++
T Consensus 106 l~~~di~~ 113 (114)
T cd04801 106 ITEADLLR 113 (114)
T ss_pred Eeccceec
Confidence 99999975
No 56
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.24 E-value=6.7e-11 Score=103.59 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=83.9
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+++++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~---------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-----------GKLSGIITERDLIAK---------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHhcC----------------------
Confidence 57789999999999999988888999999877 899999999999531
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..+.++++++++.+++++|.+++.+.+||+|+ +|+++|+||+
T Consensus 49 ---------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~ 90 (96)
T cd04614 49 ---------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRD 90 (96)
T ss_pred ---------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEH
Confidence 11558899999999999999999999999998 6899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 91 ~di~~ 95 (96)
T cd04614 91 HDLLK 95 (96)
T ss_pred HHhhc
Confidence 99986
No 57
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=6.4e-11 Score=108.00 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=95.4
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++.+++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~~~------------ 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----------GKLVGLLTQRDLLRAALSSLSDNGE------------ 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----------CCEEEEEEHHHHHHHhccccccccc------------
Confidence 56789999999999999999899999999887 8999999999997754321100000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
+.. +.....++.++|++++.++.+++++.++++.|.+.+.+.+||+|+ +++++|++|+
T Consensus 59 ---~~~--------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 116 (122)
T cd04803 59 ---ESL--------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITR 116 (122)
T ss_pred ---ccc--------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEH
Confidence 000 001224567788888899999999999999999999999999987 6899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
.|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04803 117 SDFLR 121 (122)
T ss_pred HHhhc
Confidence 99985
No 58
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.23 E-value=2.1e-11 Score=112.20 Aligned_cols=112 Identities=15% Similarity=0.202 Sum_probs=92.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|++++.+.+||+|++ ++++|+++.+|+++.+.....
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Gii~~~dl~~~~~~~~~---------------- 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----------GKILGMVTLGNLLSSLSSGKV---------------- 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHHhcc----------------
Confidence 67889999999999999999888999999887 899999999999765433211
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHH---------cCCcEEEEeeccccCCC
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ---------VGLRHLLVVPKYEAAGV 696 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~---------~~~~~lpVvd~~~~~~~ 696 (729)
+...+++++|++++.++.+++++.++.+++.. .+.+.+||+|+ +
T Consensus 56 ----------------------~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~ 108 (124)
T cd04608 56 ----------------------QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----Q 108 (124)
T ss_pred ----------------------CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-----c
Confidence 01235778888999999999999999996543 35677888887 7
Q ss_pred CcEEEEEehhhhhhh
Q 004817 697 SPVVGILTRQDLRAF 711 (729)
Q Consensus 697 g~lvGiIT~~Dll~~ 711 (729)
|+++|+||+.|++++
T Consensus 109 ~~~~Givt~~Dl~~~ 123 (124)
T cd04608 109 EKPIGIVTKIDLLSY 123 (124)
T ss_pred cceEEEEehhHhhhh
Confidence 899999999999875
No 59
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.23 E-value=9.2e-11 Score=104.48 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=90.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++.++.++.+.|.+.+++.+||+|++ ++++|+++.+|+......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~------------------- 52 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----------NKLLGIVSLESLEQAYKE------------------- 52 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----------CcEEEEEEHHHHHHHhhc-------------------
Confidence 56788999999999999998888999999987 899999999999653211
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..++.++|.+.+.++++++++.++++.|.+.+.+++||+|+ +|+++|++|+
T Consensus 53 ------------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~ 103 (109)
T cd04583 53 ------------------------AKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITR 103 (109)
T ss_pred ------------------------CCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEeh
Confidence 01244566778889999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 104 ~~l~~ 108 (109)
T cd04583 104 SSLVD 108 (109)
T ss_pred HHhhc
Confidence 99975
No 60
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=9.4e-11 Score=107.87 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=92.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++..|+.+...........
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~------------ 58 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----------GKLIGNISASDLKGLLLSPDDLLLY------------ 58 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----------CcEEEEEEHHHhhhhhcCcchhhcc------------
Confidence 57889999999999999988888999999887 8999999999997754321100000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...+... .. .......+.|.+++.++++++++.+++++|.+++.+++||+|+ +++++|+||+
T Consensus 59 ~~~~~~~-------~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~ 120 (126)
T cd04642 59 RTITFKE-------LS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITL 120 (126)
T ss_pred cchhhhh-------hh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEH
Confidence 0000000 00 0001122446677889999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 121 ~dil~ 125 (126)
T cd04642 121 TDIIS 125 (126)
T ss_pred HHHhc
Confidence 99975
No 61
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=7.8e-11 Score=105.83 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=91.5
Q ss_pred eeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhh
Q 004817 547 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS 626 (729)
Q Consensus 547 ~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~ 626 (729)
..++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~dl~~~~~~~~~----------------- 54 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----------KRLVGIITRYDVLSYALESEE----------------- 54 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----------CCEEEEEEHHHHHHhhhhhhh-----------------
Confidence 4678999999999999998888999999887 899999999999764322110
Q ss_pred hHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehh
Q 004817 627 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 706 (729)
Q Consensus 627 ~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~ 706 (729)
....+++++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|++|+.
T Consensus 55 ---------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~~ 108 (113)
T cd04615 55 ---------------------LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTED 108 (113)
T ss_pred ---------------------hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEHH
Confidence 0012355677778889999999999999999999999999998 78999999999
Q ss_pred hhhh
Q 004817 707 DLRA 710 (729)
Q Consensus 707 Dll~ 710 (729)
|+++
T Consensus 109 dl~~ 112 (113)
T cd04615 109 DILR 112 (113)
T ss_pred Hhhc
Confidence 9975
No 62
>COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism]
Probab=99.22 E-value=1.7e-10 Score=128.73 Aligned_cols=183 Identities=17% Similarity=0.189 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 113 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i 113 (729)
.....+++|++.|+.+.++.+......+++.+. . ... ...+++.+++++ +...+.|+..|.|...+
T Consensus 234 ~~~~~~~lGii~G~~g~~~~~~~~~~~~~~~~~---------~-~~~---~~~~~~~g~l~g-~~~l~~P~~lg~G~~~~ 299 (443)
T COG0038 234 DLLLYLVLGIIAGLFGVLLSRLLALSRRFFRRL---------P-LPP---LLRPALGGLLVG-ALGLLFPEVLGNGYGLI 299 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------c-chH---HHHHHHHHHHHH-HHHHhchhhhCCCccHH
Confidence 344678999999999988888775553322211 1 111 122333444444 44477899999998888
Q ss_pred HHHHhCCCCCCcc-chhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHH
Q 004817 114 KAYLNGVDTPNMF-GATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDL 192 (729)
Q Consensus 114 ~~~l~g~~~~~~l-~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l 192 (729)
....++. .... ....++.|++.++++++||.++|...|++.+|+++|..+++ ..+. +++. +..+.-.+
T Consensus 300 ~~~~~~~--~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~----~~~~---~~~~--~~~~~~~~ 368 (443)
T COG0038 300 QLALAGE--GGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGA----LLGL---LFPP--SILEPGLF 368 (443)
T ss_pred HHHHccC--ccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHH----HHHh---hcCc--cccchHHH
Confidence 8877763 2222 35578899999999999999999999999999999999997 2221 1111 12345579
Q ss_pred HHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 004817 193 ITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 244 (729)
Q Consensus 193 i~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~~ 244 (729)
..+||+|.++++-|+|++++++++|++..+ +.+.+.+.++.+++++...
T Consensus 369 al~Gm~a~la~~~~aPlta~vlv~EmTg~~---~~~l~ll~a~~ia~~~~~~ 417 (443)
T COG0038 369 ALLGMAAFLAATTRAPLTAIVLVLEMTGNY---QLLLPLLIACLIAYLVSRL 417 (443)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHhCCc---chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999853 4556777777777776664
No 63
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.22 E-value=8e-11 Score=105.79 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=92.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+++.+.+..... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~i~~~~~~~~~-~-------------- 56 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----------GRLVGIFTDGDLRRALEKGLD-I-------------- 56 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----------CCEEEEechHHHHHHHhccCc-c--------------
Confidence 56788999999999999988888899999887 899999999999875543210 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|++.+.++++++++.++++.|.+.+.+.+||+|+ +++++|+||+
T Consensus 57 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~ 108 (114)
T cd04604 57 -----------------------LTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD-----NGRPVGVLHI 108 (114)
T ss_pred -----------------------ccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEH
Confidence 012355677778889999999999999999999999999997 6899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
.|+++
T Consensus 109 ~di~~ 113 (114)
T cd04604 109 HDLLR 113 (114)
T ss_pred HHhhc
Confidence 99975
No 64
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.22 E-value=9.8e-11 Score=103.91 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=88.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----------g~~~Giv~~~dl~~~~~-------------------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----------GQPLGFVTRREAARASG-------------------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEeHHHHHHhcc--------------------
Confidence 56789999999999999988888899999876 89999999999964210
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
.++.++|++.+..+.+++++.++++.|.+.+.+.+||+|+ +++++|+||+
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 100 (106)
T cd04582 51 -------------------------GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQ 100 (106)
T ss_pred -------------------------cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEH
Confidence 0133456666778999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 101 ~~l~~ 105 (106)
T cd04582 101 RSIAD 105 (106)
T ss_pred HHhhc
Confidence 99975
No 65
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.22 E-value=5.8e-11 Score=110.69 Aligned_cols=132 Identities=20% Similarity=0.213 Sum_probs=95.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+|++.|+.+........... . ......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----------~~~~Gvi~~~dl~~~~~~~~~~~~~----~-~~~~~~ 66 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----------GRLVGIVSEGDLLRRAELGTERRRA----R-WLDLLA 66 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----------CCEEEEeeHHHHHHHhcccCcchhh----h-HHHHhc
Confidence 67889999999999999999999999999987 8999999999997654322100000 0 000000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...+... ........++.++|++++..+.+++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 67 ~~~~~~~-----------~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~------g~~~Gvit~ 129 (135)
T cd04586 67 GAEELAA-----------AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG------GRLVGIVSR 129 (135)
T ss_pred chHHHHH-----------HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC------CEEEEEEEh
Confidence 0000000 00001124577888888999999999999999999999999999986 899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04586 130 ADLLR 134 (135)
T ss_pred Hhhhc
Confidence 99875
No 66
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=8.9e-11 Score=105.19 Aligned_cols=109 Identities=15% Similarity=0.226 Sum_probs=91.0
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+++.+|+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----------EKLKGVVTFTDILDLDLFESF---------------- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----------CCEEEEEehHHhHHHHhhccc----------------
Confidence 56789999999999999998889999999887 899999999999754321100
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 105 (111)
T cd04626 55 -----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD------NKLIGVVRT 105 (111)
T ss_pred -----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEh
Confidence 012355667788889999999999999999999999999986 889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
.|+++
T Consensus 106 ~di~~ 110 (111)
T cd04626 106 KDILD 110 (111)
T ss_pred HHhcc
Confidence 99875
No 67
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.21 E-value=1.5e-10 Score=106.07 Aligned_cols=120 Identities=16% Similarity=0.226 Sum_probs=91.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|++ +++++|+|+..|+++.+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~----------~~~~~Giv~~~dl~~~~~~~~~~~-------------- 57 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEE----------SGEVIGILSQRRLVEFLWENARSF-------------- 57 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCC----------CCcEEEEEEHHHHHHHHHHhHHhc--------------
Confidence 57789999999999999998888999999862 168999999999987653321000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
+..+.. ........++|..++.++++++++.++++.|.+++.+++||+|+ +++++|+||+
T Consensus 58 ~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~ 117 (123)
T cd04627 58 PGLDPL---------------YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISV 117 (123)
T ss_pred cchhhh---------------hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeH
Confidence 000000 00012234567778889999999999999999999999999998 7899999999
Q ss_pred hhhh
Q 004817 706 QDLR 709 (729)
Q Consensus 706 ~Dll 709 (729)
+|+.
T Consensus 118 ~di~ 121 (123)
T cd04627 118 TDVR 121 (123)
T ss_pred HHhh
Confidence 9985
No 68
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.21 E-value=9.4e-11 Score=109.60 Aligned_cols=133 Identities=18% Similarity=0.191 Sum_probs=96.1
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++++.|.+.+++.+||+|++ ++++|+++..|+++.+........ ....+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~--~~~~~------ 62 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----------GKPVGVITYRDLAFAEFEDNERGL--PKKSI------ 62 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----------CCEEEEEeHHHHHHHhhccccccc--chhhh------
Confidence 56789999999999999998888999999987 899999999999876542210000 00000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
.+........+... .....+++++|.+++..+.+++++.++++.|.+.+.+++||+|+ ++++|+||+
T Consensus 63 ---~~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------~~~~Gvit~ 129 (135)
T cd04621 63 ---KMKRKAGQKRYRYV----KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN------DNIVGVITK 129 (135)
T ss_pred ---hhhhhccccccccc----ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------CEEEEEEEH
Confidence 00000000000000 00123577888888889999999999999999999999999986 889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04621 130 TDICR 134 (135)
T ss_pred HHHhh
Confidence 99976
No 69
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.21 E-value=1.4e-10 Score=103.71 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=90.8
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|+.+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~dl~~~~~~~~----------------- 53 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG------------GRVVGIISRRDVEKALRHGL----------------- 53 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6778999999999999998888889999987 69999999999976442110
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|.+++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+||+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvvt~ 104 (110)
T cd04595 54 -----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVED------GRLVGIVTR 104 (110)
T ss_pred -----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC------CEEEEEEEh
Confidence 012355677788889999999999999999999999999986 899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 105 ~di~~ 109 (110)
T cd04595 105 TDLLR 109 (110)
T ss_pred HHhhc
Confidence 99975
No 70
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=1.2e-10 Score=105.08 Aligned_cols=114 Identities=20% Similarity=0.257 Sum_probs=90.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+++++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+..... .+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~-~~------------- 56 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----------GKYVGTISLTDILWKLKGLEN-LD------------- 56 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----------CcEEEEEeHHHHHHHhhccCc-hh-------------
Confidence 57889999999999999998888999999887 899999999999765432110 00
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..++ ....++++|++.+.++.+++++.++++.|.+.+ .+||+|+ +++++|+||+
T Consensus 57 -~~~~------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~ 110 (116)
T cd04643 57 -LERL------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITR 110 (116)
T ss_pred -HHHH------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEH
Confidence 0000 012356778888889999999999999998754 5999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 111 ~dil~ 115 (116)
T cd04643 111 REILK 115 (116)
T ss_pred HHhhc
Confidence 99986
No 71
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.20 E-value=1.9e-10 Score=102.77 Aligned_cols=108 Identities=21% Similarity=0.345 Sum_probs=90.9
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+++.....+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~~l~~~~~~~~~---------------- 53 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD------------GKLVGIVTLSDIAHAIARGLE---------------- 53 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhcccc----------------
Confidence 5778999999999999999888899999986 699999999999764432110
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..++.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||+
T Consensus 54 ------------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 104 (110)
T cd04588 54 ------------------------LAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITR 104 (110)
T ss_pred ------------------------ccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEh
Confidence 02345566778889999999999999999999999999987 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 105 ~dl~~ 109 (110)
T cd04588 105 TDILR 109 (110)
T ss_pred HHhhc
Confidence 99975
No 72
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=1.2e-10 Score=108.05 Aligned_cols=130 Identities=19% Similarity=0.276 Sum_probs=95.3
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++..|+.+.+.......+..... ..
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~i~~~~l~~~~~~~~~~~~~~~~~------~~ 64 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----------GRVVGIVSEGDLIRKIYKGKGLFYVTLLY------SV 64 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----------CCEEEEEeHHHHHHHHhccCCcccccccc------cc
Confidence 56789999999999999988888999999987 89999999999987654321000000000 00
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...+ ++ ........++.++|++++..+.+++++.++++.|.+.+.+.+||+|+ |+++|++|+
T Consensus 65 ~~~~--------~~----~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~iGvit~ 126 (132)
T cd04636 65 IFLD--------ES----KIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD------GKLVGIISR 126 (132)
T ss_pred cccc--------hH----HHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC------CEEEEEEEH
Confidence 0000 00 00000113577888888899999999999999999999999999986 899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 127 ~dl~~ 131 (132)
T cd04636 127 GDIIR 131 (132)
T ss_pred HHhhc
Confidence 99986
No 73
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.19 E-value=1.5e-10 Score=103.96 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=91.0
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++++++++.+.|.+.+.+.+||+|+ ++++|+++.+|+...+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------------NKLVGIFTSKDIALRVVAQGLDP-------------- 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHHhcCCCc--------------
Confidence 5678899999999999998888888999986 79999999999975332111000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|++++.++++++++.++++.|.+.+.+++||+|+ +++++|+||+
T Consensus 56 -----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~ 107 (113)
T cd04587 56 -----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDV 107 (113)
T ss_pred -----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEH
Confidence 012456778888889999999999999999999999999997 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|++.
T Consensus 108 ~dl~~ 112 (113)
T cd04587 108 TKLTH 112 (113)
T ss_pred HHhcc
Confidence 99975
No 74
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=1.5e-10 Score=104.37 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=87.2
Q ss_pred CeeEecCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 624 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 624 (729)
++.++++++++.++.+.|.+.+ .+.+||+|+ ++++|+++..|+.+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~-------------- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK------------GRLLGIFTERDIVRLTAIGKDL-------------- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC------------CcEEEEEeHHHHHHHHhcCCCc--------------
Confidence 4668899999999999998777 566777764 7999999999997644321100
Q ss_pred hhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCC--CCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEE
Q 004817 625 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES--MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 702 (729)
Q Consensus 625 ~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~--~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGi 702 (729)
...++.++|.+++.++.++ +++.++++.|.+++.+.+||+|+ +|+++|+
T Consensus 56 ------------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gv 106 (115)
T cd04620 56 ------------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGL 106 (115)
T ss_pred ------------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEE
Confidence 0123455666777788887 78999999999999999999998 7899999
Q ss_pred Eehhhhhh
Q 004817 703 LTRQDLRA 710 (729)
Q Consensus 703 IT~~Dll~ 710 (729)
||++|+++
T Consensus 107 it~~dl~~ 114 (115)
T cd04620 107 VTAESIRQ 114 (115)
T ss_pred EEhHHhhc
Confidence 99999986
No 75
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.19 E-value=1.7e-10 Score=103.54 Aligned_cols=112 Identities=23% Similarity=0.360 Sum_probs=92.8
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+++++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~---------------- 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----------GRLVGIVSLDDIREILFDPSL---------------- 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----------CCEEEEEEHHHHHHHHhcccc----------------
Confidence 57789999999999999998888999999986 899999999999764422110
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
....++.++|++++.++++++++.++++.|.+.+.+.+||+|+ . +++++|++|+
T Consensus 55 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~-~~~~~Gvvt~ 108 (114)
T cd04613 55 ----------------------YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD---D-PGKLLGILSR 108 (114)
T ss_pred ----------------------cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC---C-CCEEEEEEEh
Confidence 0013456678888999999999999999999999999999974 0 4789999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04613 109 SDLLS 113 (114)
T ss_pred HHhhc
Confidence 99975
No 76
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=2.1e-10 Score=102.88 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=90.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|++..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~i~~~~l~~~~~~~~~~~-------------- 55 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------------DRLVGIVTDRDIVVRAVAEGRDP-------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEhHHHHHHHhhccCCc--------------
Confidence 6778999999999999999888999999986 79999999999863211100000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...+++++|++.+.++.+++++.++.+.|.+.+.+.+||+|+ +++++|++|+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 107 (113)
T cd04622 56 -----------------------DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSL 107 (113)
T ss_pred -----------------------ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEH
Confidence 012356677788889999999999999999999999999987 6899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04622 108 GDLAR 112 (113)
T ss_pred HHhhc
Confidence 99975
No 77
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.19 E-value=1.8e-10 Score=103.18 Aligned_cols=109 Identities=20% Similarity=0.308 Sum_probs=90.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++++++++.+.+.+.+++.+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~~~--------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD------------GRLVGIVTDRDLRNRVVAEGLD--------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHhccCCC---------------
Confidence 5778999999999999998888889999986 6999999999997643221100
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|++++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|+
T Consensus 55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Giit~ 105 (111)
T cd04800 55 -----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD------GRLVGVISA 105 (111)
T ss_pred -----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEH
Confidence 012355667788889999999999999999999999999986 889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04800 106 TDLLR 110 (111)
T ss_pred HHhhc
Confidence 99975
No 78
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=1.2e-10 Score=106.07 Aligned_cols=120 Identities=24% Similarity=0.366 Sum_probs=93.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++..|+++.........+ .. .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~~~~~-----~~--~--- 60 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----------GELIGIITRRDIIRAGSVRTSVED-----QQ--R--- 60 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEcHHHHhhccccccccc-----hh--h---
Confidence 57789999999999999988888999999887 899999999999753211000000 00 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
+ ......++.++|.+++..+++++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 61 ~-------------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~ 116 (122)
T cd04635 61 T-------------------QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDR 116 (122)
T ss_pred h-------------------hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEh
Confidence 0 000123456677788889999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04635 117 HDVLK 121 (122)
T ss_pred HHhhc
Confidence 99986
No 79
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2e-10 Score=105.88 Aligned_cols=126 Identities=24% Similarity=0.267 Sum_probs=93.9
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.......... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~~~~~~~~~~~~~---------~~ 61 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----------GKLTGIVTRHDIVDFVVRDRDKARTG---------DR 61 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----------CcEEEEEEHHHHHHHHhhhhhhcchh---------hh
Confidence 56789999999999999999999999999987 89999999999987543211000000 00
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
.. + .......+++++|++++.++++++++.+++++|.+.+.+.+||+++ ..+++++|+||+
T Consensus 62 ~~-~---------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~---~~~~~~~Gvit~ 122 (128)
T cd04632 62 SG-E---------------KERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP---DDDTKVVGILTK 122 (128)
T ss_pred hh-h---------------hhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc---CCCCcEEEEEEh
Confidence 00 0 0000123466778888889999999999999999999999999842 115889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 123 ~di~~ 127 (128)
T cd04632 123 KDVLR 127 (128)
T ss_pred Hhhhc
Confidence 99975
No 80
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.18 E-value=2.5e-10 Score=102.33 Aligned_cols=110 Identities=17% Similarity=0.257 Sum_probs=87.9
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.+.+.+.+.++|.++ ++++|+++.+|+.+.+.... .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~--~~~------------ 55 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVMER------------GELVGLLTFREVLQAMAQHG--AGV------------ 55 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEeeC------------CEEEEEEEHHHHHHHHHhcC--Cch------------
Confidence 5778999999999999998777766666554 89999999999976543210 000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...+++++|++.+.++.+++++.++++.|.+.+.+.+||+|+ ++++|++|+
T Consensus 56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------~~~~Gvvt~ 106 (112)
T cd04625 56 -----------------------LDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG------GTLLGVISF 106 (112)
T ss_pred -----------------------hcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------CEEEEEEEH
Confidence 012355677777889999999999999999999999999986 899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04625 107 HDVAK 111 (112)
T ss_pred HHhhc
Confidence 99976
No 81
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.17 E-value=2.5e-10 Score=102.04 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=90.9
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~---------------- 53 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD------------GRLVGIVTLADIRRVPAEGRE---------------- 53 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------------CeEEEEEEHHHHHHHHhcCcc----------------
Confidence 5778999999999999998888889999987 699999999999764322100
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 105 (111)
T cd04612 54 -----------------------ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSR 105 (111)
T ss_pred -----------------------cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEH
Confidence 002344567788889999999999999999999999999987 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
.|+++
T Consensus 106 ~di~~ 110 (111)
T cd04612 106 SDLLR 110 (111)
T ss_pred HHhhh
Confidence 99975
No 82
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.17 E-value=2.8e-10 Score=101.66 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=91.3
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~~l~~~~~~~~~---------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------------GRPLGIVTERDILRLLASGPD---------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEeHHHHHHHHhcCCC----------------
Confidence 5678999999999999999888889999976 799999999999765432110
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|.+++..+++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 105 (111)
T cd04611 54 -----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQ 105 (111)
T ss_pred -----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEh
Confidence 012355667778889999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04611 106 TDLLQ 110 (111)
T ss_pred HHhhc
Confidence 99975
No 83
>PRK03655 putative ion channel protein; Provisional
Probab=99.17 E-value=5e-10 Score=123.61 Aligned_cols=171 Identities=13% Similarity=0.079 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 113 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i 113 (729)
.|...+++|+++|+++.+|.+......++++.. + + + +. ...+++++++.+.....|+..|+|..++
T Consensus 222 ~~~~~l~lgi~~gl~G~lf~~~~~~~~~~~~~~-----~-~-p---~~----~~~lgGl~vg~l~l~~~~~~~g~Gy~~i 287 (414)
T PRK03655 222 DILSGAIVAAIAIAAGMVAVWCLPRLHALMHRL-----K-N-P---VL----VLGIGGFILGILGVIGGPLTLFKGLDEM 287 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----c-c-c---hH----HHHHHHHHHHHHHHHhCCccccCCHHHH
Confidence 355678899999999999988777665543321 1 1 1 11 1234455556555444588899999999
Q ss_pred HHHHhCCCCCCccchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHH
Q 004817 114 KAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 193 (729)
Q Consensus 114 ~~~l~g~~~~~~l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li 193 (729)
+..+++.+..-..-.-..+.|++.+.+++++|.++|...|+..+|+++|+.+++ ++ ++.+....+
T Consensus 288 ~~~~~~~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~~~~-----------l~----p~~~~~~~v 352 (414)
T PRK03655 288 QQMAANQAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLMLHA-----------HV----PAVPAAITV 352 (414)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHHHHH-----------hc----cCCChHHHH
Confidence 887765211111111145789999999999999999999999999999999987 22 123456788
Q ss_pred Hhhcccchhhhcc----CCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 004817 194 TCGSSSGVCAAFR----APVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVV 241 (729)
Q Consensus 194 ~~G~aAgiaa~F~----APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v 241 (729)
+++|+|.++++-+ +|+++.+.++|++ +.+.+..+.+++++
T Consensus 353 ~~~m~a~la~vtr~p~~sp~ta~viv~em~--------~~~l~~~~~~~~~~ 396 (414)
T PRK03655 353 SCAILGIVLVVTRDGWLSLFMAAVVVPDTT--------LLPLLCIVMLPAWL 396 (414)
T ss_pred HHHHHHHHHHHhccchhhHHHHHHHHhcch--------HHHHHHHHHHHHHH
Confidence 9999999999999 6999999999997 34556566666553
No 84
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.17 E-value=6.8e-11 Score=132.60 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=103.8
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhc-----CCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhc
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRN-----TTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 607 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~-----~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~ 607 (729)
...+++++|++ ++.+++++++++++.+.+++ ++...+||+|++ ++++|+++.+|++.. .
T Consensus 129 ~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----------~~l~GvV~l~dLl~a---~ 192 (449)
T TIGR00400 129 SDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----------KHLKGVLSIRDLILA---K 192 (449)
T ss_pred CcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----------CeEEEEEEHHHHhcC---C
Confidence 45689999998 99999999999999999975 334567888876 899999999998531 0
Q ss_pred hhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEE
Q 004817 608 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 687 (729)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpV 687 (729)
. ..+++++|++++.++++++++.++.+.|++++...+||
T Consensus 193 ~-----------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lpV 231 (449)
T TIGR00400 193 P-----------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVPV 231 (449)
T ss_pred C-----------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEeE
Confidence 0 02366778888889999999999999999999999999
Q ss_pred eeccccCCCCcEEEEEehhhhhhhhhhhhcC
Q 004817 688 VPKYEAAGVSPVVGILTRQDLRAFNILTAFP 718 (729)
Q Consensus 688 vd~~~~~~~g~lvGiIT~~Dll~~~~~~~~~ 718 (729)
+|+ +|+++|+||.+|+++...++..+
T Consensus 232 VD~-----~g~lvGiIt~~Dil~~l~~~~~e 257 (449)
T TIGR00400 232 VDN-----EGRLVGIVTVDDIIDVIQSEATE 257 (449)
T ss_pred EcC-----CCeEEEEEEHHHHHHHHHhhhHH
Confidence 998 79999999999999988775543
No 85
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.17 E-value=2.7e-10 Score=102.03 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=89.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+.++++++++++++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~~~--------------- 54 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG------------DPRLGIVTRTDLLDAVLLDGLP--------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------------CeEEEEEEHHHHHHHHHcCCCC---------------
Confidence 4668899999999999998888888999876 6899999999997644221100
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|+++...+++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 105 (111)
T cd04589 55 -----------------------SSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG------GEVVGVLEQ 105 (111)
T ss_pred -----------------------CCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC------CEEEEEEEh
Confidence 112355667778889999999999999999999999999986 889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
.|+++
T Consensus 106 ~dl~~ 110 (111)
T cd04589 106 TDLLS 110 (111)
T ss_pred HHhhc
Confidence 99976
No 86
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=2.5e-10 Score=104.51 Aligned_cols=123 Identities=21% Similarity=0.260 Sum_probs=94.2
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|++ +++++|+|+.+|+.+.+.+... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~----------~~~~~G~v~~~dl~~~~~~~~~-~~~~~~--------- 61 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEG----------TGKLVGIITATDILKYLGGGEK-FNKIKT--------- 61 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCC----------CCEEEEEEEHHHHHHHhhccch-hccccc---------
Confidence 56789999999999999998888899999862 1699999999999876543210 000000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
. .. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 62 -----~------~~------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit~ 119 (125)
T cd04631 62 -----G------NG------LEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVTE 119 (125)
T ss_pred -----c------cc------chhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEEH
Confidence 0 00 000113466777788899999999999999999999999999987 6899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
.|+++
T Consensus 120 ~di~~ 124 (125)
T cd04631 120 RDLLK 124 (125)
T ss_pred HHhhc
Confidence 99986
No 87
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.16 E-value=2.4e-10 Score=103.06 Aligned_cols=109 Identities=18% Similarity=0.312 Sum_probs=87.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+..++++++++.++.+.|.+.+++.+||+|++ ++.++++|+++.+|+..... .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~~~~G~v~~~dl~~~~~--~----------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--------KSGGKLLGIVTSRDIDFLTD--S----------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--------CcCCEEEEEEEhHHhhhhhc--c-----------------
Confidence 56788999999999999988888899999861 11289999999999853110 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecC--CCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEE
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE--SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL 703 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~--~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiI 703 (729)
..+++++|.+.+..+.. ++++.++++.|.+.+.+.+||+|+ +++++|+|
T Consensus 56 ------------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvi 106 (114)
T cd04602 56 ------------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALV 106 (114)
T ss_pred ------------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEE
Confidence 01245667666777766 999999999999999999999987 78999999
Q ss_pred ehhhhhh
Q 004817 704 TRQDLRA 710 (729)
Q Consensus 704 T~~Dll~ 710 (729)
|++|+++
T Consensus 107 t~~di~~ 113 (114)
T cd04602 107 TRSDLKK 113 (114)
T ss_pred EHHHhhc
Confidence 9999875
No 88
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.16 E-value=1.5e-10 Score=129.23 Aligned_cols=122 Identities=20% Similarity=0.197 Sum_probs=104.8
Q ss_pred cccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 004817 531 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 610 (729)
Q Consensus 531 ~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~ 610 (729)
.++.+++.++|.+ +++++++++++.++.+.|.+.+.+.+||+|+ ++++|+|+.+|+... .
T Consensus 84 ~v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------------gklvGIVT~rDL~~~----~-- 143 (475)
T TIGR01303 84 TVAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE------------DRPVGLVTDSDLLGV----D-- 143 (475)
T ss_pred HHhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------------CEEEEEEEHHHhhcC----C--
Confidence 4667888899988 8899999999999999999888888888875 689999999998320 0
Q ss_pred hhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeec
Q 004817 611 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~ 690 (729)
...+++++|++++.++++++++.+++++|.+++.+.+||+|+
T Consensus 144 --------------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~ 185 (475)
T TIGR01303 144 --------------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA 185 (475)
T ss_pred --------------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC
Confidence 012366788889999999999999999999999999999997
Q ss_pred cccCCCCcEEEEEehhhhhhhhhhh
Q 004817 691 YEAAGVSPVVGILTRQDLRAFNILT 715 (729)
Q Consensus 691 ~~~~~~g~lvGiIT~~Dll~~~~~~ 715 (729)
+++++|+||++|+++.....
T Consensus 186 -----~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 186 -----DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred -----CCeEEEEEEHHHHHHHHhCC
Confidence 78999999999999866654
No 89
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.15 E-value=1.9e-10 Score=129.46 Aligned_cols=117 Identities=13% Similarity=0.163 Sum_probs=97.5
Q ss_pred cccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHH
Q 004817 541 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE 620 (729)
Q Consensus 541 m~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~ 620 (729)
|.+ +++++++++++.++.+.|.+++++.+||+|++ ...++++|+|+.+|+.... +
T Consensus 106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~--------~~~GklvGIVT~~DL~~v~---~------------ 160 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETG--------TMGSKLLGYVTKRDWDFVN---D------------ 160 (505)
T ss_pred ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC--------CcCCeEEEEEEHHHHhhcc---c------------
Confidence 666 78899999999999999999999999999862 1127999999999995311 0
Q ss_pred HhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCC--CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCc
Q 004817 621 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 698 (729)
Q Consensus 621 ~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~ 698 (729)
...+++++|++. ..++++++++.+++++|.+++.+.+||+|+ +++
T Consensus 161 ----------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~ 207 (505)
T PLN02274 161 ----------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGE 207 (505)
T ss_pred ----------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCe
Confidence 013466777765 669999999999999999999999999998 789
Q ss_pred EEEEEehhhhhhhhhhh
Q 004817 699 VVGILTRQDLRAFNILT 715 (729)
Q Consensus 699 lvGiIT~~Dll~~~~~~ 715 (729)
++|+||++|+++.....
T Consensus 208 LvGvITr~DIlk~~~~p 224 (505)
T PLN02274 208 LVDLVTRTDVKRVKGYP 224 (505)
T ss_pred EEEEEEHHHHHHHhhCc
Confidence 99999999999877653
No 90
>cd01036 ClC_euk Chloride channel, ClC. These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function.
Probab=99.15 E-value=2.4e-10 Score=127.00 Aligned_cols=100 Identities=19% Similarity=0.186 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcc------------CCCccHHHHHHHHHhhhhhhccchhH
Q 004817 408 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------------TNIDQGLYAVLGAASLMAGSMRMTVS 475 (729)
Q Consensus 408 ~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~~g~~~~~~------------~~~~~~~~a~vG~aa~~a~~~~~pls 475 (729)
++.|++.+.+++|+|.+.|.+.|++.+||++|..+++.+... ...+...+..+|++|.++++.|+|++
T Consensus 88 ~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APia 167 (416)
T cd01036 88 LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIG 167 (416)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcce
Confidence 346999999999999999999999999999999999976421 12345679999999999999999999
Q ss_pred HHHHHHHHhCC-cc--hHHHHHHHHHHHHHHHhhc
Q 004817 476 LCVIFLELTNN-LL--LLPITMIVLLIAKTVGDSF 507 (729)
Q Consensus 476 ~~vl~~Eltg~-~~--~~~p~lia~~va~~v~~~~ 507 (729)
++++.+|.+.. ++ .+.+++++++++..+.+.+
T Consensus 168 GvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 168 GLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred eeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998853 33 5788888888888887655
No 91
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.15 E-value=4.4e-10 Score=100.76 Aligned_cols=110 Identities=22% Similarity=0.289 Sum_probs=90.2
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|+++.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------------EKPVGIITERDLVKKVVSRNLKP-------------- 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------------CEEEEEEEHHHHHHHHhhccCCc--------------
Confidence 5678999999999999999888899999986 59999999999977443211000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|++++.++.+++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~ 106 (112)
T cd04802 56 -----------------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD------DELVGIVTT 106 (112)
T ss_pred -----------------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------CEEEEEEEh
Confidence 012355667778889999999999999999999999999987 489999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 107 ~di~~ 111 (112)
T cd04802 107 TDIVM 111 (112)
T ss_pred hhhhc
Confidence 99975
No 92
>cd03683 ClC_1_like ClC-1-like chloride channel proteins. This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia
Probab=99.15 E-value=3e-10 Score=126.45 Aligned_cols=183 Identities=13% Similarity=0.137 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cch----hhHHHHHHHHHHHhhhh-hccccccccCCCCCCCCC
Q 004817 280 IPVTLIGIIGGILGGLYNHILHKVLRLYNLINQK---GKM----HKLLLALSVSVFTSVCQ-YCLPFLADCKACDPSFPE 351 (729)
Q Consensus 280 ~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~gl~~~~i~-~~~p~~~~~~~~~~~~~~ 351 (729)
...+++|++.|+++.+|....++..+++..+... .++ ..++.+.+++++.+.+. ++.|..
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a------------ 70 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQA------------ 70 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------------
Confidence 4567899999999999999999988776544321 111 12334444455555444 244443
Q ss_pred CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCC-CCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhH
Q 004817 352 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNT-PTEFQPSSILIFFILYCILGLITFGIAVPSGLFLP 430 (729)
Q Consensus 352 ~~p~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ll~~~~lk~~~t~lt~g~G~~GG~f~P 430 (729)
.|. | -. ++++..+... ....++. .++.|++.+.+++++|.+-|++.|
T Consensus 71 ----~Gs-G-----------Ip------------~v~~~l~g~~~~~~l~~r----~~~~k~i~~~l~i~sG~svGrEGP 118 (426)
T cd03683 71 ----VGS-G-----------IP------------EMKTILRGVVLPEYLTFK----TLVAKVIGLTCALGSGLPLGKEGP 118 (426)
T ss_pred ----CCC-C-----------HH------------HHHHHHcCCCccccccHH----HHHHHHHHHHHHHhcCCCCCCCCc
Confidence 121 1 11 1222222110 1112222 234699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-----CCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhC-Ccc--hHHHHHHHHHHHHH
Q 004817 431 IILMGSAYGRLLGMAMGSY-----TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NLL--LLPITMIVLLIAKT 502 (729)
Q Consensus 431 sl~iGa~~G~~~g~~~~~~-----~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg-~~~--~~~p~lia~~va~~ 502 (729)
+..+||++|..+++..+.. ...+...+..+|+||.+++++|+|++++++.+|... +++ .+.|.+++++++..
T Consensus 119 ~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~ 198 (426)
T cd03683 119 FVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAF 198 (426)
T ss_pred hHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHH
Confidence 9999999999999987531 112334699999999999999999999999999874 343 56777788888877
Q ss_pred HHhh
Q 004817 503 VGDS 506 (729)
Q Consensus 503 v~~~ 506 (729)
+.+.
T Consensus 199 v~~~ 202 (426)
T cd03683 199 TFRL 202 (426)
T ss_pred HHHH
Confidence 6553
No 93
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=1.8e-10 Score=106.13 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=86.9
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++++++++++.|.+.+.+.+||+|++ ++++|+++.+|+.+....+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~~----------- 59 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----------DNFIGVITAVDLLGEEPIKRIQEGGI----------- 59 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHhhChhhHHHHHcCC-----------
Confidence 45788999999999999988888899999986 89999999999975211000000000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCcee------cCCCCHHHHHHHHHHcCCcEEEEeeccccCCC-Cc
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV------IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SP 698 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v------~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~-g~ 698 (729)
.....+++++|++++..+ .+++++.++++.|.+.+.+.+||+|+ + |+
T Consensus 60 ---------------------~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-----~~~~ 113 (126)
T cd04640 60 ---------------------SRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-----EHHQ 113 (126)
T ss_pred ---------------------CchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-----CCCE
Confidence 000123556665544333 37899999999999999999999997 5 68
Q ss_pred EEEEEehhhhhh
Q 004817 699 VVGILTRQDLRA 710 (729)
Q Consensus 699 lvGiIT~~Dll~ 710 (729)
++|+||++|+++
T Consensus 114 ~~G~it~~di~~ 125 (126)
T cd04640 114 IRGIISTSDIAR 125 (126)
T ss_pred EEEEEeHHHHhh
Confidence 999999999976
No 94
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.14 E-value=2.1e-10 Score=132.35 Aligned_cols=162 Identities=18% Similarity=0.166 Sum_probs=115.7
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchh----h
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF----L 610 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~----~ 610 (729)
.+++|+|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.+.+...+. .
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~l~Givt~~di~~~~~~~~~~~~~~ 134 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----------GKLLGLVSLSDLARAYMDILDPEILS 134 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHhhcchhhhh
Confidence 689999998 89999999999999999999999999999987 899999999999987654321 0
Q ss_pred hhccc--------------ch--h--------------HHHhhhh-----------------------------------
Q 004817 611 QEKRR--------------TE--E--------------WEVREKF----------------------------------- 625 (729)
Q Consensus 611 ~~~~~--------------~~--~--------------~~~~~~~----------------------------------- 625 (729)
..+.+ .. . ....+..
T Consensus 135 ~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~ 214 (546)
T PRK14869 135 KSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVS 214 (546)
T ss_pred hcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCC
Confidence 00000 00 0 0000000
Q ss_pred -hhHHhhhhcC-----cccccccChhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCc
Q 004817 626 -SWVELAEREG-----KIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 698 (729)
Q Consensus 626 -~~~dl~~~~~-----~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~ 698 (729)
...++.+... +..+...+...+.+..+++++|+ +++.++++++++.++.+.|.+++.+.+||+|+ +|+
T Consensus 215 ~~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~ 289 (546)
T PRK14869 215 EDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGK 289 (546)
T ss_pred HHHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCC
Confidence 0000000000 00111111223457778999999 88999999999999999999999999999998 799
Q ss_pred EEEEEehhhhhhhhhh
Q 004817 699 VVGILTRQDLRAFNIL 714 (729)
Q Consensus 699 lvGiIT~~Dll~~~~~ 714 (729)
++|+||++|+++...+
T Consensus 290 lvGiit~~dl~~~~~~ 305 (546)
T PRK14869 290 VVGVISRYHLLSPVRK 305 (546)
T ss_pred EEEEEEHHHhhccccC
Confidence 9999999999986553
No 95
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.14 E-value=4.7e-10 Score=100.41 Aligned_cols=109 Identities=22% Similarity=0.365 Sum_probs=88.4
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++++++++++.+.|.+.+++.+||+|++ +++++|+++..|+.+...... ..
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~----------~~~~~G~v~~~~l~~~~~~~~-~~-------------- 56 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGD----------LDNIIGVVHVKDLLRALAEGE-ED-------------- 56 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCC----------CceEEEEEEHHHHHHHHHcCC-Cc--------------
Confidence 57889999999999999998888999999763 168999999999977543211 00
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..+.++| +++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 57 -------------------------~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 105 (111)
T cd04590 57 -------------------------LDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTL 105 (111)
T ss_pred -------------------------CCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEH
Confidence 1122333 34678999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04590 106 EDILE 110 (111)
T ss_pred HHhhc
Confidence 99975
No 96
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.14 E-value=2.5e-10 Score=100.98 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=87.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~Giv~~~~l~~~~~-------------------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED------------GKLVGIITSRDVRRAHP-------------------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEehHHhhcccc--------------------
Confidence 5678899999999999998888889999984 79999999999954110
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++++|++++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 50 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 99 (105)
T cd04599 50 ------------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE------RKLVGIITK 99 (105)
T ss_pred ------------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------CEEEEEEEH
Confidence 01244567778889999999999999999999999999986 899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|++.
T Consensus 100 ~~l~~ 104 (105)
T cd04599 100 GTIAL 104 (105)
T ss_pred HHhcc
Confidence 99874
No 97
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.14 E-value=3.8e-10 Score=102.46 Aligned_cols=120 Identities=25% Similarity=0.291 Sum_probs=93.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~i~~~~l~~~~~~~~~~~~------------- 56 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------------GKLVGIVTDRDLKLASPSKATTLD------------- 56 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------------CeEEEEEeHHHHHHhhhccccccc-------------
Confidence 5678999999999999999888899999987 799999999999765432110000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..+... .....++.++|++++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 57 -~~~~~~--------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~ 116 (122)
T cd04585 57 -IWELYY--------------LLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITE 116 (122)
T ss_pred -chhhhh--------------hhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEH
Confidence 000000 00123466778888899999999999999999999999999987 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 117 ~di~~ 121 (122)
T cd04585 117 SDLFR 121 (122)
T ss_pred HHhhh
Confidence 99986
No 98
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.14 E-value=2.5e-10 Score=127.82 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=101.6
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 614 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~ 614 (729)
.+.++.|.+ ++.+++++++++++.+.|.+++++.+||+|++ ..+++++|+|+.+|+.....
T Consensus 80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~--------~~~~~lvGIVt~rDL~~~~~--------- 140 (450)
T TIGR01302 80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDG--------DMTGKLVGIITKRDIRFVKD--------- 140 (450)
T ss_pred ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC--------CCCCeEEEEEEHHHHhhhhc---------
Confidence 356788888 89999999999999999999999999999874 11258999999999953110
Q ss_pred cchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCcEEEEeecccc
Q 004817 615 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 693 (729)
Q Consensus 615 ~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~ 693 (729)
...+++++|+ +++.++++++++.++++.|.+++.+.+||+|+
T Consensus 141 ----------------------------------~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe--- 183 (450)
T TIGR01302 141 ----------------------------------KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK--- 183 (450)
T ss_pred ----------------------------------CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---
Confidence 0123566777 48889999999999999999999999999998
Q ss_pred CCCCcEEEEEehhhhhhhhh
Q 004817 694 AGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 694 ~~~g~lvGiIT~~Dll~~~~ 713 (729)
+|+++|+||++|+++...
T Consensus 184 --~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 184 --NGELVGLITMKDIVKRRK 201 (450)
T ss_pred --CCcEEEEEEhHHhhhccc
Confidence 899999999999998754
No 99
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.14 E-value=6.2e-10 Score=99.17 Aligned_cols=99 Identities=45% Similarity=0.717 Sum_probs=86.4
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecC---CCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDE---GVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVR 622 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~---~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~ 622 (729)
....++++++++++.+.+.+.+++.+||+|+ + ++++|+++.+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-----------~~~~G~v~~~dl~~~~~~---------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEES-----------PRLVGYILRSQLVVALKN---------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCC-----------CEEEEEEeHHHHHHHHHH----------------
Confidence 5778999999999999999888889999987 4 899999999999653210
Q ss_pred hhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEE
Q 004817 623 EKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 702 (729)
Q Consensus 623 ~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGi 702 (729)
+|.+++.++++++++.++++.|.+++.+.+||+++ |+++|+
T Consensus 56 ---------------------------------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------~~~~Gv 96 (105)
T cd04591 56 ---------------------------------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGI 96 (105)
T ss_pred ---------------------------------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC------CeEEEE
Confidence 35567789999999999999999999999999965 899999
Q ss_pred Eehhhhhh
Q 004817 703 LTRQDLRA 710 (729)
Q Consensus 703 IT~~Dll~ 710 (729)
||++|+++
T Consensus 97 vt~~dl~~ 104 (105)
T cd04591 97 ITRKDLLK 104 (105)
T ss_pred EEhhhhhc
Confidence 99999976
No 100
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=4.1e-10 Score=102.73 Aligned_cols=121 Identities=21% Similarity=0.313 Sum_probs=93.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+++++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.... .... +.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~-~~~~---~~------- 58 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------------NELVGVISDRDYLKAISPFL-GTAG---ET------- 58 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------------CeEEEEEEHHHHHHHHHHHh-cccc---ch-------
Confidence 5678999999999999999888899999986 79999999999987553210 0000 00
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..+.. ....+++++|.+++..+++++++.++++.|.+++.+.+||+|+ +++++|++|+
T Consensus 59 -~~~~~----------------~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~ 116 (122)
T cd04637 59 -EKDLA----------------TLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITW 116 (122)
T ss_pred -HHHHH----------------HHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEH
Confidence 00000 0012356777788889999999999999999999999999988 7899999999
Q ss_pred hhhhhh
Q 004817 706 QDLRAF 711 (729)
Q Consensus 706 ~Dll~~ 711 (729)
.|++++
T Consensus 117 ~dll~~ 122 (122)
T cd04637 117 KDLLKY 122 (122)
T ss_pred HHhhhC
Confidence 999863
No 101
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.13 E-value=2.1e-10 Score=120.28 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=97.2
Q ss_pred ccchhcccccCCC-eeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 004817 534 TLTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 612 (729)
Q Consensus 534 ~~~v~dvm~~~~~-~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~ 612 (729)
-++|+|+|.+ + +.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+....
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----------g~~~Givt~~dl~~~~~~~~---- 216 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----------NQLVGVFTDGDLRRALLGGG---- 216 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----------CCEEEEEEcHHHHHHHhcCC----
Confidence 4789999988 7 8899999999999999998888999999987 89999999999976432110
Q ss_pred cccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccc
Q 004817 613 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 692 (729)
Q Consensus 613 ~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~ 692 (729)
....+++++|.+++.++++++++.++++.|.+.+.+.+||+|+
T Consensus 217 -----------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 259 (268)
T TIGR00393 217 -----------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD-- 259 (268)
T ss_pred -----------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC--
Confidence 0012366778888889999999999999999999999999998
Q ss_pred cCCCCcEEEEEe
Q 004817 693 AAGVSPVVGILT 704 (729)
Q Consensus 693 ~~~~g~lvGiIT 704 (729)
+|+++|+|+
T Consensus 260 ---~g~l~GvI~ 268 (268)
T TIGR00393 260 ---HNKVLGVLH 268 (268)
T ss_pred ---CCeEEEEEC
Confidence 789999985
No 102
>cd03684 ClC_3_like ClC-3-like chloride channel proteins. This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn
Probab=99.12 E-value=9.4e-10 Score=123.15 Aligned_cols=189 Identities=14% Similarity=0.091 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 004817 34 KWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIPEI 113 (729)
Q Consensus 34 ~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~~i 113 (729)
.+...+++|+++|+++.+|++...++.+++.... .. ...+ ..+++.+++.+.+. ++.|+..|+|-..+
T Consensus 206 ~l~~~i~lGi~~Gl~g~lf~~~~~~~~~~~~~~~-----~~--~~~~----~~~~l~~l~~~~l~-~~~p~~~~~g~~~i 273 (445)
T cd03684 206 ELIPFILLGIFGGLYGAFFIKANIKWARFRKKSL-----LK--RYPV----LEVLLVALITALIS-FPNPYTRLDMTELL 273 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cc--hhHH----HHHHHHHHHHHHHH-hChHHHccchhhHH
Confidence 4557899999999999999999998877655431 00 0011 12223334444443 56788889887777
Q ss_pred HHHHhCCCC---------------CC-ccc----hhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCcc
Q 004817 114 KAYLNGVDT---------------PN-MFG----ATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNH 173 (729)
Q Consensus 114 ~~~l~g~~~---------------~~-~l~----~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~ 173 (729)
+...++... .. +.+ .-.++.|++.+.+++++|.++|...|+..+|+++|..++. .+
T Consensus 274 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~G~~~g~----~~ 349 (445)
T cd03684 274 ELLFNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALFGRIVGI----LV 349 (445)
T ss_pred HHHHhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHHhHHHHH----HH
Confidence 766543100 01 111 1245789999999999999999999999999999999986 22
Q ss_pred chhhhhh---hc---------cCChhhhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 004817 174 RIKWQWL---RY---------FNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVV 241 (729)
Q Consensus 174 ~l~~~~~---~~---------~~~~~~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v 241 (729)
+. +. +- .....+.-.++.+||||-++++.|+|++++++++|++.. ...+.+.++++.+|..+
T Consensus 350 ~~---~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~---~~~l~pl~ia~~iA~~v 423 (445)
T cd03684 350 EQ---LAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGA---LNYILPLMIAVMVSKWV 423 (445)
T ss_pred HH---HHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCC---cccHHHHHHHHHHHHHH
Confidence 10 10 00 001123467899999999999999999999999999974 34567777777777777
Q ss_pred HHH
Q 004817 242 LRA 244 (729)
Q Consensus 242 ~~~ 244 (729)
.+.
T Consensus 424 s~~ 426 (445)
T cd03684 424 ADA 426 (445)
T ss_pred HHH
Confidence 664
No 103
>PRK11573 hypothetical protein; Provisional
Probab=99.12 E-value=7e-10 Score=122.66 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=109.6
Q ss_pred cccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 004817 531 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 610 (729)
Q Consensus 531 ~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~ 610 (729)
.+++.+|+|+|.|+.++.+++.+++++++.+.+.+++|+.+||++++. +..+|+++.+|++..+.++.
T Consensus 183 ~l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~----------D~IiGiv~~kDll~~~~~~~-- 250 (413)
T PRK11573 183 DLEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL----------DDAISMLRVREAYRLMTEKK-- 250 (413)
T ss_pred ccCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC----------CceEEEEEHHHHHHHhhccC--
Confidence 357889999999999999999999999999999999999999997642 78999999999976432210
Q ss_pred hhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeec
Q 004817 611 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~ 690 (729)
. .... ++.+++ +++.+|++++++.++++.|++.+.+...|+|+
T Consensus 251 --~-----------~~~~-----------------------~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE 293 (413)
T PRK11573 251 --E-----------FTKE-----------------------NMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE 293 (413)
T ss_pred --c-----------CCHH-----------------------HHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec
Confidence 0 0000 112233 46789999999999999999999999999999
Q ss_pred cccCCCCcEEEEEehhhhhhhhhhhhcC
Q 004817 691 YEAAGVSPVVGILTRQDLRAFNILTAFP 718 (729)
Q Consensus 691 ~~~~~~g~lvGiIT~~Dll~~~~~~~~~ 718 (729)
.|...|+||.+|+++....+...
T Consensus 294 -----yG~~~GiVTleDilEeivGei~d 316 (413)
T PRK11573 294 -----YGDIQGLVTVEDILEEIVGDFTT 316 (413)
T ss_pred -----CCCeEEEeeHHHHHHHHhCCCCc
Confidence 78899999999999988876543
No 104
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.12 E-value=3.1e-10 Score=101.23 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=88.0
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~---~----------------- 51 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-----------GKLVGIVTNRDLRFET---D----------------- 51 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CEEEEEEEhhHeeecc---c-----------------
Confidence 56789999999999999988888999999887 8999999998884210 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecC-CCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEe
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE-SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 704 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~-~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT 704 (729)
...++.++|++.+..+.+ ++++.++++.|.+.+.+.+||+|+ +++++|+||
T Consensus 52 -----------------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~ 103 (110)
T cd04601 52 -----------------------LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLIT 103 (110)
T ss_pred -----------------------CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEE
Confidence 012345666666666777 999999999999999999999997 789999999
Q ss_pred hhhhhh
Q 004817 705 RQDLRA 710 (729)
Q Consensus 705 ~~Dll~ 710 (729)
++|+++
T Consensus 104 ~~dil~ 109 (110)
T cd04601 104 VKDIEK 109 (110)
T ss_pred hhhhhc
Confidence 999975
No 105
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.10 E-value=3.3e-10 Score=101.24 Aligned_cols=102 Identities=24% Similarity=0.237 Sum_probs=84.6
Q ss_pred ecCcccHHHHHHHHhcCC-----CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 004817 550 LSGIEKVSQIVDVLRNTT-----HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 624 (729)
Q Consensus 550 v~~~~~v~~a~~~l~~~~-----~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 624 (729)
+++++++.++.+.|.+++ +..+||+|++ ++++|+++.+|+.+. . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~~l~~~----~--~------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----------GRLLGVVSLRDLLLA----D--P------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----------CCEEEEEEHHHHhcC----C--C-------------
Confidence 578899999999998766 3678999876 899999999888531 0 0
Q ss_pred hhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEe
Q 004817 625 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 704 (729)
Q Consensus 625 ~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT 704 (729)
..++.++|++++..+.+++++.++++.|.+.+.+.+||+|+ +++++|+||
T Consensus 52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit 101 (109)
T cd04606 52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIIT 101 (109)
T ss_pred -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEE
Confidence 01244566677889999999999999999999999999997 789999999
Q ss_pred hhhhhhh
Q 004817 705 RQDLRAF 711 (729)
Q Consensus 705 ~~Dll~~ 711 (729)
+.|+++.
T Consensus 102 ~~dll~~ 108 (109)
T cd04606 102 VDDVIDV 108 (109)
T ss_pred hHHhhhh
Confidence 9999874
No 106
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.10 E-value=3.9e-10 Score=127.03 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=100.2
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 615 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~ 615 (729)
+.++.|.. +++++++++++.++.++|.+++++.+||+|++ ..+++++|+|+.+|+... . .
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~--------~~~gkLvGIVt~~DL~~~-~--~------- 156 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDG--------KVGGKLLGIVTSRDIDFV-K--D------- 156 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC--------ccCCeEEEEEEHHHHhhc-c--c-------
Confidence 36677877 88999999999999999999999999999873 123799999999998521 0 0
Q ss_pred chhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeecccc
Q 004817 616 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 693 (729)
Q Consensus 616 ~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~ 693 (729)
...+++++|++ ++.++++++++.+++++|.+++.+.+||+|+
T Consensus 157 ---------------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~--- 200 (495)
T PTZ00314 157 ---------------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND--- 200 (495)
T ss_pred ---------------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---
Confidence 01346677776 7788999999999999999999999999998
Q ss_pred CCCCcEEEEEehhhhhhhhh
Q 004817 694 AGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 694 ~~~g~lvGiIT~~Dll~~~~ 713 (729)
+++++|+||++|+++...
T Consensus 201 --~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 201 --NGELVALVSRSDLKKNRG 218 (495)
T ss_pred --CCcEEEEEEehHhhhccc
Confidence 889999999999998644
No 107
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=98.88 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=95.1
Q ss_pred cccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchh
Q 004817 539 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE 618 (729)
Q Consensus 539 dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~ 618 (729)
+.|.+ +++++.++.++.++...|.+++...+||++. .+++|+++.+|+.+.+......
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------------~~l~Giit~~di~~~~~~~~~~-------- 60 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD------------GKLVGIITERDILRALAAGGKR-------- 60 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccCCc--------
Confidence 34445 7899999999999999999999999999987 4899999999998866432100
Q ss_pred HHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHH-cCCcEEEEeeccccCCCC
Q 004817 619 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ-VGLRHLLVVPKYEAAGVS 697 (729)
Q Consensus 619 ~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~-~~~~~lpVvd~~~~~~~g 697 (729)
...+.++|++++.++.+++++.++.+.|.+ .+.+.+||+|+ ++
T Consensus 61 -------------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~ 104 (117)
T COG0517 61 -------------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DG 104 (117)
T ss_pred -------------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CC
Confidence 003566787788899999999999999999 79999999998 65
Q ss_pred -cEEEEEehhhhh
Q 004817 698 -PVVGILTRQDLR 709 (729)
Q Consensus 698 -~lvGiIT~~Dll 709 (729)
+++|++|++|++
T Consensus 105 ~~lvGivt~~di~ 117 (117)
T COG0517 105 GKLVGIITLSDIL 117 (117)
T ss_pred CeEEEEEEHHHcC
Confidence 999999999974
No 108
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.09 E-value=8e-10 Score=97.95 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=85.2
Q ss_pred eEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhh
Q 004817 548 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSW 627 (729)
Q Consensus 548 ~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 627 (729)
.++++++++.++.+.+.+.+++.+||+|+ ++++|+++.+|+.+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~---------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------------NKFLGAVYLKDIENATY---------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHHhhhcc----------------------
Confidence 47899999999999999888899999986 69999999999854110
Q ss_pred HHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhh
Q 004817 628 VELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD 707 (729)
Q Consensus 628 ~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~D 707 (729)
.++.++|.+.+.++++++++.++++.|.+++.+.+||+|+ |+++|++|++|
T Consensus 50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~iGvit~~d 100 (104)
T cd04594 50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------GKFKGIVTLDS 100 (104)
T ss_pred -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------CEEEEEEEHHH
Confidence 0134456677889999999999999999999999999976 89999999999
Q ss_pred hhh
Q 004817 708 LRA 710 (729)
Q Consensus 708 ll~ 710 (729)
+++
T Consensus 101 l~~ 103 (104)
T cd04594 101 ILD 103 (104)
T ss_pred hhc
Confidence 875
No 109
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.09 E-value=7.8e-10 Score=98.51 Aligned_cols=109 Identities=24% Similarity=0.301 Sum_probs=87.3
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~--------------- 54 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------------GRVVGSIDESDLLDALIEGKAK--------------- 54 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------------CeeEEEEeHHHHHHHHhccccc---------------
Confidence 5678999999999999999888899999986 6899999999998754321100
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...++.++|++++..+++++++.++.++|.+ .. .+||+++ +++++|++|+
T Consensus 55 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~~-~~~vv~~-----~~~~~Gvvt~ 104 (110)
T cd04609 55 -----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-GN-VAVVVDE-----GGKFVGIITR 104 (110)
T ss_pred -----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-CC-ceeEEec-----CCeEEEEEeH
Confidence 0123455677778889999999999999988 33 4788987 7899999999
Q ss_pred hhhhhh
Q 004817 706 QDLRAF 711 (729)
Q Consensus 706 ~Dll~~ 711 (729)
+|++++
T Consensus 105 ~di~~~ 110 (110)
T cd04609 105 ADLLKY 110 (110)
T ss_pred HHhhcC
Confidence 999863
No 110
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.09 E-value=5.5e-10 Score=126.39 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=101.2
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 615 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~ 615 (729)
+++++|.+ ++++++++++++++.+.|.+++++.+||+|++ ++++|+|+.+|+.... .
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----------g~lvGiVt~~DL~~~~---~------- 144 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDEN-----------GKLVGIITNRDVRFET---D------- 144 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----------CEEEEEEEHHHhhhcc---c-------
Confidence 47788988 99999999999999999999999999999987 8999999999994310 0
Q ss_pred chhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCcccccc-CCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccC
Q 004817 616 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 694 (729)
Q Consensus 616 ~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~ 694 (729)
...+++++|+ +++.++++++++.++.+.|.+.+.+.+||+|+
T Consensus 145 ---------------------------------~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---- 187 (486)
T PRK05567 145 ---------------------------------LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---- 187 (486)
T ss_pred ---------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----
Confidence 0123556676 67889999999999999999999999999998
Q ss_pred CCCcEEEEEehhhhhhhhh
Q 004817 695 GVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 695 ~~g~lvGiIT~~Dll~~~~ 713 (729)
+++++|+||++|+++...
T Consensus 188 -~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 188 -NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred -CCcEEEEEEhHHhhhhhh
Confidence 899999999999998653
No 111
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.08 E-value=1.2e-09 Score=96.85 Aligned_cols=111 Identities=26% Similarity=0.378 Sum_probs=91.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~-------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----------GRLVGIVTERDLLRALAEGGLDP-------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----------CCEEEEEeHHHHHHHHHhccCCc--------------
Confidence 56788999999999999998888899999886 89999999999977553321000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
...+.++|..++..+.+++++.++.+.|.+.+.+.+||+|+ +++++|++++
T Consensus 57 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 107 (113)
T cd02205 57 ------------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTR 107 (113)
T ss_pred ------------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEH
Confidence 00134456677888999999999999999999999999998 7999999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 108 ~dl~~ 112 (113)
T cd02205 108 SDILR 112 (113)
T ss_pred HHhhc
Confidence 99875
No 112
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.08 E-value=8.7e-10 Score=100.19 Aligned_cols=119 Identities=24% Similarity=0.320 Sum_probs=92.6
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+...... ....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~-~~~~------------ 57 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----------GRLVGIVTDRDLRDASPSPF-TTLS------------ 57 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEHHHHHHHhhhhc-ccch------------
Confidence 56788999999999999988888899999987 89999999999975432110 0000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..+. ......+++++|++++.++.+++++.++++.|.+.+.+.+||+|+ ++++|++|.
T Consensus 58 -~~~~---------------~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvv~~ 115 (121)
T cd04584 58 -EHEL---------------YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED------GRLVGIITE 115 (121)
T ss_pred -hhhh---------------hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEH
Confidence 0000 000123466778788889999999999999999999999999986 889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 116 ~di~~ 120 (121)
T cd04584 116 TDLLR 120 (121)
T ss_pred HHhhc
Confidence 99975
No 113
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.08 E-value=7.8e-10 Score=98.16 Aligned_cols=104 Identities=24% Similarity=0.400 Sum_probs=88.2
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.+++.+.+++++.+.|.+.+.+.+||+|+ ++++|+++..|+... . .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------------~~~~g~v~~~~l~~~----~--~-------------- 50 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN------------GKVVGIVSARDLLGK----D--P-------------- 50 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhcc----C--c--------------
Confidence 6778999999999999998878888999875 799999999998531 0 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..+++++|.+.+.++.+++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 51 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~ 101 (107)
T cd04610 51 ------------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITN 101 (107)
T ss_pred ------------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEH
Confidence 01245667777888999999999999999999999999998 7899999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
.|+++
T Consensus 102 ~di~~ 106 (107)
T cd04610 102 TDVIR 106 (107)
T ss_pred HHhhc
Confidence 99975
No 114
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.07 E-value=9e-10 Score=100.19 Aligned_cols=119 Identities=22% Similarity=0.288 Sum_probs=92.4
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+.... ..+..
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~-~~~~~----------- 57 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------------GKLVGIVTEKDIADALRSFR-PLVRD----------- 57 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------------CEEEEEEchHHHHHhhhhhh-hcccc-----------
Confidence 5678999999999999998888889999986 79999999999976543211 00000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
. ... ......++.++|++++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 58 ~--~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~ 115 (121)
T cd04633 58 R--HQE--------------RRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD------GKLVGIVTR 115 (121)
T ss_pred h--hhh--------------hhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC------CEEEEEEEH
Confidence 0 000 000123456678888899999999999999999999999999986 889999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 116 ~dl~~ 120 (121)
T cd04633 116 TDILR 120 (121)
T ss_pred HHhhc
Confidence 99986
No 115
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.06 E-value=4.6e-10 Score=122.09 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=110.4
Q ss_pred CcccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchh
Q 004817 530 PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 609 (729)
Q Consensus 530 ~~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~ 609 (729)
..+-..+++++|.. +.+++++..++.++.+.|.+++.+...+++++ +.+.|+||++|+.........
T Consensus 144 ~e~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----------~~~~GIvT~~dl~~~v~~~g~ 210 (610)
T COG2905 144 SEFILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----------GPLLGIVTRKDLRSRVIADGR 210 (610)
T ss_pred chHHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----------CCccceeehHHHHHHHHhcCC
Confidence 34445679999998 89999999999999999999999988888887 899999999999775433110
Q ss_pred hhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEee
Q 004817 610 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP 689 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd 689 (729)
+...+++++|+.++.+|..++.+-+|+-.|.+.+++++||++
T Consensus 211 --------------------------------------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e 252 (610)
T COG2905 211 --------------------------------------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE 252 (610)
T ss_pred --------------------------------------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec
Confidence 123568899999999999999999999999999999999998
Q ss_pred ccccCCCCcEEEEEehhhhhhhhhh
Q 004817 690 KYEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 690 ~~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
+ |+++|+||..||++...+
T Consensus 253 ~------gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 253 D------GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred C------CeeeEEeeHHHHHHhhCC
Confidence 7 999999999999997764
No 116
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=99.04 E-value=2e-09 Score=120.15 Aligned_cols=131 Identities=21% Similarity=0.323 Sum_probs=109.7
Q ss_pred cccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 004817 531 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 610 (729)
Q Consensus 531 ~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~ 610 (729)
.+++.+|+++|.++.++..++.+.+++++.+.+.+++|+.+||++++ .+.++|+++.+|++..+.+...
T Consensus 202 ~l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----------~D~iiGiv~~Kdll~~~~~~~~- 270 (429)
T COG1253 202 DLDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----------LDNIIGIVHVKDLLRALLDGQS- 270 (429)
T ss_pred ccCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------CCcEEEEEEHHHHHHHHhcCcc-
Confidence 46788999999999999999999999999999999999999999943 2899999999999876543210
Q ss_pred hhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeec
Q 004817 611 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~ 690 (729)
. ......+ ++|..|++.+++.++++.|++.+.+...|+|+
T Consensus 271 -~--------------------------------------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE 310 (429)
T COG1253 271 -D--------------------------------------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE 310 (429)
T ss_pred -c--------------------------------------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc
Confidence 0 0011111 37789999999999999999999999999999
Q ss_pred cccCCCCcEEEEEehhhhhhhhhhhhc
Q 004817 691 YEAAGVSPVVGILTRQDLRAFNILTAF 717 (729)
Q Consensus 691 ~~~~~~g~lvGiIT~~Dll~~~~~~~~ 717 (729)
.|.+.|+||..|+++....+..
T Consensus 311 -----yG~~~GlVTleDIiEeIvGei~ 332 (429)
T COG1253 311 -----YGGVEGLVTLEDIIEEIVGEIP 332 (429)
T ss_pred -----CCCeEEEeEHHHHHHHHhCCCc
Confidence 7999999999999998887554
No 117
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=2e-09 Score=95.53 Aligned_cols=104 Identities=27% Similarity=0.352 Sum_probs=87.2
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+++.... . +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~v~~~~l~~~~---~---~------------- 51 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----------GELVGIITRKDLLRNP---E---E------------- 51 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhcc---c---c-------------
Confidence 57788999999999999988888899999886 8999999999985310 0 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
..+.++|++++.++.+++++.++.+.|.+.+.+.+||+|+ ++++|++|+
T Consensus 52 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~ 100 (106)
T cd04638 52 -------------------------EQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTV 100 (106)
T ss_pred -------------------------chHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEH
Confidence 0133456677888999999999999999999999999987 689999999
Q ss_pred hhhhh
Q 004817 706 QDLRA 710 (729)
Q Consensus 706 ~Dll~ 710 (729)
+|+++
T Consensus 101 ~d~~~ 105 (106)
T cd04638 101 ADIVR 105 (106)
T ss_pred HHhhc
Confidence 99875
No 118
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.02 E-value=2.2e-09 Score=97.34 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=88.6
Q ss_pred CeeEecCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 624 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 624 (729)
++.++++++++.++.+.+.+.+ ++.+||+|+ ++++|+++.+|+.+.+.... ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~~l~~~~~~~~-~~------------- 55 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------------GRPVGLIMREALMELLSTPY-GR------------- 55 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------------CeeEEEEEHHHHHHHHhchh-hH-------------
Confidence 5668899999999999998766 788999986 69999999999976543211 00
Q ss_pred hhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCc---EEEEeeccccCCCCcEEE
Q 004817 625 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLR---HLLVVPKYEAAGVSPVVG 701 (729)
Q Consensus 625 ~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~---~lpVvd~~~~~~~g~lvG 701 (729)
+. ....++.++|++++.++.+++++.++++.|.+.+.+ ..+|+++ +|+++|
T Consensus 56 ----~~-----------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~G 109 (119)
T cd04598 56 ----AL-----------------YGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLG 109 (119)
T ss_pred ----HH-----------------HcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEE
Confidence 00 011346677888889999999999999999998864 3468887 799999
Q ss_pred EEehhhhhh
Q 004817 702 ILTRQDLRA 710 (729)
Q Consensus 702 iIT~~Dll~ 710 (729)
+||+.|+++
T Consensus 110 vvs~~di~~ 118 (119)
T cd04598 110 IGTVKDLLR 118 (119)
T ss_pred EEEHHHHhc
Confidence 999999975
No 119
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.00 E-value=3.2e-09 Score=100.18 Aligned_cols=136 Identities=23% Similarity=0.308 Sum_probs=95.4
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc-----ccchhHH
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK-----RRTEEWE 620 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~-----~~~~~~~ 620 (729)
+++++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|+.+.+.......+. .......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELP 69 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------------CeEEEEecHHHHHHHHHhccCccccccCCcceeeecc
Confidence 5678999999999999999989999999986 6999999999998766432210000 0000000
Q ss_pred HhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEE
Q 004817 621 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVV 700 (729)
Q Consensus 621 ~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lv 700 (729)
..+.....+.... .+ + ....++.++|++++.++++++++.++++.|.+.+.+.+||+++ ++++
T Consensus 70 ~~~~~~~~~~~~~---~~-------~-~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~~ 132 (143)
T cd04634 70 LREFINWEETKRA---LT-------D-AGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED------GRLV 132 (143)
T ss_pred chheeehHHHHHH---HH-------H-HhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEE
Confidence 0000001110000 00 0 0124567788888999999999999999999999999999986 7899
Q ss_pred EEEehhhhhh
Q 004817 701 GILTRQDLRA 710 (729)
Q Consensus 701 GiIT~~Dll~ 710 (729)
|++|++|+++
T Consensus 133 Gvvt~~dl~~ 142 (143)
T cd04634 133 GIVTRGDIIE 142 (143)
T ss_pred EEEEHHHhhc
Confidence 9999999875
No 120
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.98 E-value=1.8e-09 Score=112.19 Aligned_cols=133 Identities=20% Similarity=0.284 Sum_probs=111.9
Q ss_pred cccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 004817 531 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 610 (729)
Q Consensus 531 ~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~ 610 (729)
.+++++|+|+|.++.++..++.+++.+++++.+.+..|+.+||..++. +..+|+++.+|+++.+.++..
T Consensus 196 DLe~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~----------DnIiGvlh~r~llr~l~e~~~- 264 (423)
T COG4536 196 DLENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL----------DNIIGVLHVRDLLRLLNEKNE- 264 (423)
T ss_pred ccccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh----------hHhhhhhhHHHHHHHhhccCc-
Confidence 368999999999998999999999999999999999999999997652 679999999999998876541
Q ss_pred hhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeec
Q 004817 611 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~ 690 (729)
+.-.|+.+ + -.+|.+|++.+++.+-+..|.+.+.+.-.|||+
T Consensus 265 --------------~~k~d~~~-----------------------~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE 306 (423)
T COG4536 265 --------------FTKEDILR-----------------------A-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE 306 (423)
T ss_pred --------------ccHhHHHH-----------------------H-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec
Confidence 11112221 0 157889999999999999999999999999999
Q ss_pred cccCCCCcEEEEEehhhhhhhhhhhhc
Q 004817 691 YEAAGVSPVVGILTRQDLRAFNILTAF 717 (729)
Q Consensus 691 ~~~~~~g~lvGiIT~~Dll~~~~~~~~ 717 (729)
.|.+.|++|.+|++++...+.-
T Consensus 307 -----YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 307 -----YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred -----cCcEEeeeeHHHHHHHHhcccc
Confidence 7889999999999998776443
No 121
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.91 E-value=8.4e-09 Score=96.16 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=80.2
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++.++++++++.++++.|.+.+++.+||+|++ ++++|+++.+|+++.+.......... .+........
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----------g~l~Givt~~Dl~~~~~~~~~~~~~~-~~~~~~~~~~ 69 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----------DFLEGILTLGDIQRFLFTNKTTRVQP-EDETKQTNTC 69 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHhhcccccccc-chhhcccccc
Confidence 67899999999999999988888999999987 89999999999988664322111000 0000000000
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeec
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 690 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~ 690 (729)
.+.+++. ...+.+.|..++.++.+++++.++++.|.+++.+.+||+|+
T Consensus 70 ~v~~i~~-----------------~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 70 LVSSVCT-----------------KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred cHHHHhh-----------------hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0001110 01123345567889999999999999999999999999986
No 122
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.85 E-value=6e-09 Score=114.69 Aligned_cols=127 Identities=22% Similarity=0.229 Sum_probs=106.8
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhch
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 608 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~-----~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~ 608 (729)
.-+++.+|+. ++++++++.|+.++++.+++. ....+.|+|++ ++++|+++.++++. .+
T Consensus 131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----------~~L~Gvvsl~~Ll~---a~- 193 (451)
T COG2239 131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----------GKLLGVVSLRDLLT---AE- 193 (451)
T ss_pred hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----------cceEEEeeHHHHhc---CC-
Confidence 3578999999 999999999999999998743 34567899987 89999999999853 10
Q ss_pred hhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEe
Q 004817 609 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 688 (729)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVv 688 (729)
....++++|++.+..|.++++-+++.++|++++.-.+|||
T Consensus 194 ----------------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVV 233 (451)
T COG2239 194 ----------------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVV 233 (451)
T ss_pred ----------------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceE
Confidence 0123667788889999999999999999999999999999
Q ss_pred eccccCCCCcEEEEEehhhhhhhhhhhhcCCccc
Q 004817 689 PKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER 722 (729)
Q Consensus 689 d~~~~~~~g~lvGiIT~~Dll~~~~~~~~~~~~~ 722 (729)
|+ +++++|+||..|+++...++..+...+
T Consensus 234 d~-----~~~LiG~itiDDiidvi~eEa~eDi~~ 262 (451)
T COG2239 234 DE-----DNRLIGIITIDDIIDVIEEEATEDILR 262 (451)
T ss_pred CC-----CCceeeeeeHHHHHHHHHHHHHHHHHH
Confidence 99 899999999999999888876655443
No 123
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.71 E-value=3.2e-08 Score=96.55 Aligned_cols=132 Identities=22% Similarity=0.346 Sum_probs=109.6
Q ss_pred ccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 004817 532 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 611 (729)
Q Consensus 532 l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~ 611 (729)
...++|+|+|.+++..+++..+.++.+.+..+.+..|+.|||+.+++ +...|++..+||++.+....
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edk----------D~v~GIL~AKDLL~~~~~~~--- 130 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK----------DHVEGILLAKDLLPFMRSDA--- 130 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCc----------hhhhhhhhHHHHHHHhcCCc---
Confidence 35789999999998999999999999999999999999999997653 78999999999988664321
Q ss_pred hcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeecc
Q 004817 612 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 691 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~ 691 (729)
+. .+++++. ++...|++.-.+...++-|+..+.+...|+|+
T Consensus 131 -----------~~--------------------------F~i~~lL-RPav~VPESKrvd~lLkeFR~~RnHMAIViDE- 171 (293)
T COG4535 131 -----------EP--------------------------FDIKELL-RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE- 171 (293)
T ss_pred -----------cc--------------------------ccHHHhc-ccceecccchhHHHHHHHHHhhcCceEEEEec-
Confidence 01 1222222 55568899999999999999999999999999
Q ss_pred ccCCCCcEEEEEehhhhhhhhhhhhcCC
Q 004817 692 EAAGVSPVVGILTRQDLRAFNILTAFPH 719 (729)
Q Consensus 692 ~~~~~g~lvGiIT~~Dll~~~~~~~~~~ 719 (729)
-|-+.|+||..|+++....+...+
T Consensus 172 ----fGgVsGLVTIEDiLEqIVGdIEDE 195 (293)
T COG4535 172 ----FGGVSGLVTIEDILEQIVGDIEDE 195 (293)
T ss_pred ----cCCeeeeEEHHHHHHHHhcccccc
Confidence 788999999999999888765543
No 124
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.69 E-value=3.4e-08 Score=77.35 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=51.3
Q ss_pred cccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 654 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 654 ~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
+++|++++.++++++++.++.+.|.+++.+++||+|+ +++++|+||++|++++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhhh
Confidence 4678899999999999999999999999999999998 899999999999998753
No 125
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.53 E-value=2.2e-07 Score=72.63 Aligned_cols=56 Identities=32% Similarity=0.588 Sum_probs=52.2
Q ss_pred hhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHh
Q 004817 537 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 605 (729)
Q Consensus 537 v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~ 605 (729)
|+|+|.+ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|+++.+.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-----------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------SBEEEEEEHHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------CEEEEEEEHHHHHhhhh
Confidence 5789999 99999999999999999999999999999887 99999999999988653
No 126
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=98.48 E-value=8.4e-07 Score=96.76 Aligned_cols=127 Identities=16% Similarity=0.207 Sum_probs=99.5
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
++..+.+++++.++++.|.+.+.+.+||+|++ ++.+|.+++.|+........+...... .
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----------g~~v~~~s~~Dv~~l~~~~~~~~~~~~--------~- 297 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----------GKKVGNYSRFDVIHLAREGTYNNLDLS--------C- 297 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----------CceecceehhhhhhhhhcCccCccchh--------H-
Confidence 57889999999999999999999999999987 778999999999887665443321100 0
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
.... .+.+..-....++|.+++++.++++.+..++.+++.|+|+ +|+++|+||.
T Consensus 298 -l~~~--------------------~~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSL 351 (381)
T KOG1764|consen 298 -LSEA--------------------LSHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISL 351 (381)
T ss_pred -HHHH--------------------hhhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeH
Confidence 0000 0111111233578999999999999999999999999998 8999999999
Q ss_pred hhhhhhhhhhhcC
Q 004817 706 QDLRAFNILTAFP 718 (729)
Q Consensus 706 ~Dll~~~~~~~~~ 718 (729)
.|++.+...+...
T Consensus 352 sDil~~l~~~p~~ 364 (381)
T KOG1764|consen 352 SDILSYLVLTPSG 364 (381)
T ss_pred HHHHHHHHhCccC
Confidence 9999988876543
No 127
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.39 E-value=7.6e-07 Score=93.45 Aligned_cols=112 Identities=19% Similarity=0.312 Sum_probs=95.4
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+.+.++|+.++.++++....+....+||.++. .-+.+|+|+|+.+|+-.. ++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g--------~~~~KLvG~vtsrdi~f~-~~------------------- 168 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG--------KRGSKLVGIITSRDIQFL-ED------------------- 168 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC--------cccceeEEEEehhhhhhh-hc-------------------
Confidence 45688999999999999999999999999865 356889999999999432 10
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
....++++|.+.+.+.+.+.++.++-+++++.+...+||+|+ +|+++-+|+|
T Consensus 169 -----------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~r 220 (503)
T KOG2550|consen 169 -----------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSR 220 (503)
T ss_pred -----------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeeh
Confidence 123467888888889999999999999999999999999999 8999999999
Q ss_pred hhhhhhhh
Q 004817 706 QDLRAFNI 713 (729)
Q Consensus 706 ~Dll~~~~ 713 (729)
.|+++...
T Consensus 221 tDl~k~~~ 228 (503)
T KOG2550|consen 221 TDLMKNRD 228 (503)
T ss_pred hhhhhhcC
Confidence 99988443
No 128
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.28 E-value=6.3e-06 Score=89.69 Aligned_cols=109 Identities=21% Similarity=0.218 Sum_probs=88.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
......++.+..++.+.+.+.+.+...|+|++ +++.|.++.+++.......
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------------------ 301 (363)
T TIGR01186 251 GPITKTADKGPRSALQLMRDERVDSLYVVDRQ-----------NKLVGVVDVESIKQARKKA------------------ 301 (363)
T ss_pred cceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----------CCEEEEEeHHHHHHHhhcC------------------
Confidence 33456677789999999998888888999887 8999999999886543221
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
-.+.+.+.+...++++++++.+++..|.+++.. +||+|+ +|+++|+||+
T Consensus 302 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~ 350 (363)
T TIGR01186 302 -------------------------QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTR 350 (363)
T ss_pred -------------------------CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEH
Confidence 013334456667899999999999999999999 999998 8999999999
Q ss_pred hhhhhhhhh
Q 004817 706 QDLRAFNIL 714 (729)
Q Consensus 706 ~Dll~~~~~ 714 (729)
.++++.+..
T Consensus 351 ~~~~~~~~~ 359 (363)
T TIGR01186 351 GSLVDALYD 359 (363)
T ss_pred HHHHHHHHh
Confidence 999997765
No 129
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.20 E-value=9.8e-06 Score=89.30 Aligned_cols=121 Identities=16% Similarity=0.149 Sum_probs=92.8
Q ss_pred cchhcccccCCC-eeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 004817 535 LTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 613 (729)
Q Consensus 535 ~~v~dvm~~~~~-~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~ 613 (729)
.++.++|.+... .+...++.+..++++.|.+.+.+...|+|++ +++.|.++.+++.+.....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------ 336 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----------NKFVGAVSIDSLKTALTQQ------ 336 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------CcEEEEEeHHHHHhhhhcC------
Confidence 456667744111 1233466788999999999999999999988 9999999999996533210
Q ss_pred ccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeecccc
Q 004817 614 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 693 (729)
Q Consensus 614 ~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~ 693 (729)
.++.+.+.+...++.+++++.+++..+.+.... +||+|+
T Consensus 337 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--- 375 (400)
T PRK10070 337 -------------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE--- 375 (400)
T ss_pred -------------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---
Confidence 012333455667899999999999999998877 999998
Q ss_pred CCCCcEEEEEehhhhhhhhhhh
Q 004817 694 AGVSPVVGILTRQDLRAFNILT 715 (729)
Q Consensus 694 ~~~g~lvGiIT~~Dll~~~~~~ 715 (729)
+|+++|+||+.++++.+..+
T Consensus 376 --~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 376 --DQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred --CCcEEEEEEHHHHHHHHHhc
Confidence 89999999999999987653
No 130
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.02 E-value=7.3e-06 Score=82.82 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=55.7
Q ss_pred hccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhh
Q 004817 649 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 649 ~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
.+++.++||.++.+++++|+++.++.+++.+++++.+||+|+ +.+++|++|++|+.+....
T Consensus 243 ~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~GiVt~~dl~~~a~~ 303 (382)
T COG3448 243 GELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE-----HRRLVGIVTQRDLLKHARP 303 (382)
T ss_pred ccccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc-----ccceeeeeeHHHHhhccCc
Confidence 356788999999999999999999999999999999999999 8999999999999984433
No 131
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=97.79 E-value=7.3e-06 Score=94.88 Aligned_cols=144 Identities=19% Similarity=0.288 Sum_probs=98.2
Q ss_pred cccchhcccc-cCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 004817 533 RTLTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 611 (729)
Q Consensus 533 ~~~~v~dvm~-~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~ 611 (729)
...+|+++|+ + ++++++++++++++.+.|.+++++.+||+|++ ++++|+|+++|+++....+....
T Consensus 244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----------g~lvGiit~~dl~~~~~~~~iLV 310 (546)
T PRK14869 244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----------GKVVGVISRYHLLSPVRKKVILV 310 (546)
T ss_pred cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----------CCEEEEEEHHHhhccccCceEEE
Confidence 3567999999 7 89999999999999999999999999999987 89999999999987543322111
Q ss_pred hcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCcee---cCCCCHHHHHHHHHHcCCcEEEEe
Q 004817 612 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV---IESMSVAKAMVLFRQVGLRHLLVV 688 (729)
Q Consensus 612 ~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v---~~~~~l~~a~~~f~~~~~~~lpVv 688 (729)
+.. +.... .. .+++.++.+ -++ +.++.++|+..|..+ +..++...+.++|.+.+.+..|++
T Consensus 311 D~~-----e~~q~--~~-------~~~~~~i~~-iiD-HH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~i 374 (546)
T PRK14869 311 DHN-----EKSQA--VE-------GIEEAEILE-IID-HHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEI 374 (546)
T ss_pred cCc-----ccccc--cc-------chhhceEEE-Eec-CCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHH
Confidence 100 00000 00 000000000 000 112445666666555 346677789999999999988888
Q ss_pred eccccCCCCcEEEEEehhhhhhh
Q 004817 689 PKYEAAGVSPVVGILTRQDLRAF 711 (729)
Q Consensus 689 d~~~~~~~g~lvGiIT~~Dll~~ 711 (729)
.. ..+.||+|-++.++.
T Consensus 375 a~------~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 375 AG------LLLAAILSDTLLFKS 391 (546)
T ss_pred HH------HHHHHHHHHhcCccC
Confidence 75 679999998888874
No 132
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.76 E-value=2.6e-05 Score=87.75 Aligned_cols=113 Identities=11% Similarity=0.202 Sum_probs=87.7
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 614 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~ 614 (729)
.+++++|++ ++.+++++++++++.+.|+++++..+||+|++ ++++|+|+.+|+++.+....
T Consensus 195 ~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----------g~lvGiIt~~Dil~~l~~~~------ 255 (449)
T TIGR00400 195 EILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----------GRLVGIVTVDDIIDVIQSEA------ 255 (449)
T ss_pred CcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----------CeEEEEEEHHHHHHHHHhhh------
Confidence 469999988 88899999999999999999999999999987 89999999999988765321
Q ss_pred cchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccC
Q 004817 615 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 694 (729)
Q Consensus 615 ~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~ 694 (729)
.. ++|+....+..+++.+.+....+.+++...++|.-
T Consensus 256 ------------~e--------------------------d~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~~----- 292 (449)
T TIGR00400 256 ------------TE--------------------------DFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVLL----- 292 (449)
T ss_pred ------------HH--------------------------HHHHhcCCCCCcchhhhchHHHHHHhccchHHHHH-----
Confidence 01 22223333344567888889999999998887762
Q ss_pred CCCcEEEEEehhhhhhhhhh
Q 004817 695 GVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 695 ~~g~lvGiIT~~Dll~~~~~ 714 (729)
+.|++| ..+++.+.+
T Consensus 293 ----~~~~~t-~~ii~~f~~ 307 (449)
T TIGR00400 293 ----VSSTFT-ATIISNYED 307 (449)
T ss_pred ----HHHHHH-HHHHHHHHH
Confidence 677888 677665544
No 133
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.74 E-value=4.1e-05 Score=69.01 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=50.4
Q ss_pred cCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhh
Q 004817 651 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 710 (729)
Q Consensus 651 ~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~ 710 (729)
.+++++|.+.+.++++++++.++++.|.+.+.+.+||+|+ +++++|+||.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence 4577888888999999999999999999999999999998 789999999999864
No 134
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.65 E-value=0.00019 Score=79.89 Aligned_cols=196 Identities=14% Similarity=0.099 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHH
Q 004817 32 FLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDRYLQGFLYFTGVNFLLTLVAAVLCVCFAPTAAGPGIP 111 (729)
Q Consensus 32 ~~~wl~~i~~Gv~~Gl~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~p~~~g~Gi~ 111 (729)
+...+..+++|+++|+.+.+|.++-....+.+... .-+.+.. ...+..+.+.+ +..+..|..+=.+..
T Consensus 306 ~~EL~pFi~LGifgGl~G~~~ir~n~~~~~~rK~~-----~lg~~pv------~ev~~vt~iTa-iIs~~np~~r~~~~e 373 (696)
T KOG0475|consen 306 LFELLPFILLGIFGGLWGAFFIRLNIRFCRFRKSS-----KLGKFPV------LEVVFVTLVTA-IISLFNPETRFNMSE 373 (696)
T ss_pred cccchHHHHHHHhhhHHHHHHHHHHHHHHhccchh-----hccCCcc------hhHHHHHHHHH-HHHhcCHHHHhhHHH
Confidence 33455789999999999999988877666655543 1122211 12222333333 333666766655544
Q ss_pred HHHHHHhCCCCCCc-------------cchhHHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHhccCCCCccchhhh
Q 004817 112 EIKAYLNGVDTPNM-------------FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQ 178 (729)
Q Consensus 112 ~i~~~l~g~~~~~~-------------l~~~~~~~k~l~~~ls~gsG~s~G~EgP~v~iGa~ig~~l~~~~~~~~~l~~~ 178 (729)
-+...++.-..... .-....+.|++.++++.|++.+.|..-|++.+||+.|..++-+.-++++- +.
T Consensus 374 ~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmaiGA~aGr~vG~~~e~l~~~-~~ 452 (696)
T KOG0475|consen 374 LITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAIGAIAGRAVGIIVEQLAQN-PD 452 (696)
T ss_pred HHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 45544432111111 11344578999999999999999999999999999999887311000000 00
Q ss_pred hhhccCChhhhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 004817 179 WLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLR 243 (729)
Q Consensus 179 ~~~~~~~~~~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~va~~v~~ 243 (729)
|.-.-.+-.........|+||-++++-|-|++-++..+|++.. .+.+.|.+.+..++-++..
T Consensus 453 ~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~---l~~IlPlm~av~~SkwI~d 514 (696)
T KOG0475|consen 453 FNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGA---LNYILPLMLAVMISKWIGD 514 (696)
T ss_pred ccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCc---ceeHHHHHHHHHHHHHHHh
Confidence 0000001123456788999999999999999999999999974 3445565555444444433
No 135
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=97.63 E-value=4.4e-05 Score=70.54 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=55.9
Q ss_pred ccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhhh
Q 004817 650 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 716 (729)
Q Consensus 650 ~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~~ 716 (729)
.+..+.+|..+.+.|++|+++.++.++|+++|..++||+++ ++++|-||..|+.+...+..
T Consensus 64 ~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------~k~VGsItE~~iv~~~le~~ 124 (187)
T COG3620 64 RITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE------DKVVGSITENDIVRALLEGM 124 (187)
T ss_pred eEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC------CeeeeeecHHHHHHHHhccc
Confidence 35577899999999999999999999999999999999997 99999999999999887654
No 136
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=97.63 E-value=8e-05 Score=74.28 Aligned_cols=59 Identities=17% Similarity=0.293 Sum_probs=54.9
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 604 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l 604 (729)
.+.+|+|+|++ +++++.+|+.+.||++.|.+++...+.|+|++ |+.+|+||+.|++..+
T Consensus 232 ~~~kV~~~M~k--~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~-----------gkpvGiITrTDIL~~i 290 (294)
T COG2524 232 LDAKVSDYMRK--NVITINEDEDIYDAIRLMNKNNVGRLLVTDSN-----------GKPVGIITRTDILTRI 290 (294)
T ss_pred ccccHHHHhcc--CCceEcCchhHHHHHHHHHhcCcceEEEEccC-----------CcEEEEEehHHHHHHh
Confidence 35789999999 99999999999999999999999999999987 9999999999998754
No 137
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.57 E-value=0.00011 Score=65.57 Aligned_cols=55 Identities=27% Similarity=0.338 Sum_probs=50.0
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.+++++|.. ++.++++++++.++++.|.+++.+.+||+|++ ++++|+||.+|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----------~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----------GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CeEEEEEEhHHhhc
Confidence 458899987 78899999999999999999999999999987 89999999999864
No 138
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.53 E-value=0.00013 Score=65.68 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=50.2
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 601 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~ 601 (729)
.+++|+|.+ ++.++++++++.++++.|.+.+++.+||+|++ ++++|+|+.+|+.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----------~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----------GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHhh
Confidence 679999988 88899999999999999999999999999987 8999999999984
No 139
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.44 E-value=0.0002 Score=64.21 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=50.6
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.+++++|.+ +..++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----------ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----------CcEEEEEEhHhhcc
Confidence 3568899988 88899999999999999999999999999976 89999999999853
No 140
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.26 E-value=0.00071 Score=76.97 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=51.7
Q ss_pred cchhcccc-cCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 004817 535 LTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 604 (729)
Q Consensus 535 ~~v~dvm~-~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l 604 (729)
.+++++|. + +++++++++++.++.+.|.+++.+.+||+|++ ++++|+|+++|+++.+
T Consensus 147 ~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 147 QPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----------GRLKGLITVKDIEKAE 204 (486)
T ss_pred CcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEEhHHhhhhh
Confidence 46889997 5 78899999999999999999999999999987 8999999999997754
No 141
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.20 E-value=0.00057 Score=60.98 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=49.1
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 601 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~ 601 (729)
.+++++|.+ +..++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|++
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEE-----------GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----------CCEEEEEEhHHhc
Confidence 468899987 88899999999999999999999999999876 8999999999985
No 142
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.17 E-value=0.00082 Score=60.75 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 660 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 660 ~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
+..++++++++.++.+.|.+++.+.+||+|+ +++++|++|++|+++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-----NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEeHHHHHHHHh
Confidence 3467899999999999999999999999987 799999999999997553
No 143
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.17 E-value=0.00083 Score=49.15 Aligned_cols=46 Identities=35% Similarity=0.499 Sum_probs=41.4
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 711 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~ 711 (729)
+.++.+++++.++.+.|.+.+.+.+||+++ +++++|+++..|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHh
Confidence 356889999999999999999999999998 6899999999999764
No 144
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.15 E-value=0.00074 Score=59.09 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=41.9
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCC-CcEEEEEehhhhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFN 712 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~-g~lvGiIT~~Dll~~~ 712 (729)
..++++++++.++.+.|.+.+.+.+||+|+ + ++++|++|..|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-----~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS-----RKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeC-----CCCEEEEEEEHHHHhhhe
Confidence 357899999999999999999999999986 4 7899999999998643
No 145
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.14 E-value=0.00072 Score=61.29 Aligned_cols=57 Identities=28% Similarity=0.579 Sum_probs=51.1
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
...+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|+++
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----------RRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----------CCEEEEEEhHHhhc
Confidence 45578899988 88999999999999999999999999999976 89999999999854
No 146
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.12 E-value=0.00077 Score=60.28 Aligned_cols=56 Identities=27% Similarity=0.512 Sum_probs=49.2
Q ss_pred ccchhcccccCCCeeEecCc--ccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGI--EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~--~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.++.++|.+ ++.+++++ +++.++++.|.+++.+.+||+|++ ++++|+|+++|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----------GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----------CCEEEEEEhHHhhc
Confidence 3568889987 78888887 789999999999999999999987 89999999999864
No 147
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0011 Score=73.94 Aligned_cols=80 Identities=21% Similarity=0.204 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhc-----------c-CCCccHHHHHHHHHhhhhhhccchhH
Q 004817 408 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGS-----------Y-TNIDQGLYAVLGAASLMAGSMRMTVS 475 (729)
Q Consensus 408 ~~lk~~~t~lt~g~G~~GG~f~Psl~iGa~~G~~~g~~~~~-----------~-~~~~~~~~a~vG~aa~~a~~~~~pls 475 (729)
++.|++-...+.+.|.-.|...|.+-.||+++..++|.=.. + ..-+-.=++.+|+||..+|++|+|+.
T Consensus 189 L~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvG 268 (762)
T KOG0474|consen 189 LIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVG 268 (762)
T ss_pred hHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCcc
Confidence 35699999999999999999999999999999999974322 0 22355678999999999999999999
Q ss_pred HHHHHHHHhCCc
Q 004817 476 LCVIFLELTNNL 487 (729)
Q Consensus 476 ~~vl~~Eltg~~ 487 (729)
++++.+|-..++
T Consensus 269 GvLFaLEE~aS~ 280 (762)
T KOG0474|consen 269 GVLFALEEGASW 280 (762)
T ss_pred ceEEEechhhHH
Confidence 999999987654
No 148
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=97.10 E-value=0.00092 Score=60.13 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=51.4
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+..++.++|.+ +..++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQ-----------GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----------CcEEEEEEHHHhhh
Confidence 45678899988 88999999999999999999999999999886 89999999999864
No 149
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.08 E-value=0.00094 Score=59.06 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=50.3
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.+++++|.+ +..++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----------KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 4568899987 88899999999999999999999999999977 89999999999853
No 150
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=97.08 E-value=0.0012 Score=61.35 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhh
Q 004817 660 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 660 ~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHhh
Confidence 3568899999999999999999999999998 7999999999999987654
No 151
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.08 E-value=0.00088 Score=59.36 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=50.5
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 603 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~ 603 (729)
+.+++++|.+ +..++.+++++.++.+.|.+.+.+.+||+|++ ++++|+|+.+|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEE-----------GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----------CcEEEEEEhHHhhhh
Confidence 3568888887 88899999999999999998888899999876 899999999999753
No 152
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.05 E-value=0.0011 Score=58.85 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=48.6
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.++.++|++ ++.+++++++++++++.|.+++...+||+|+ ++++|+++.+|+++
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDG------------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------------CEEEEEEEHHHhhc
Confidence 468899987 7889999999999999999999999999985 79999999999864
No 153
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.04 E-value=0.0012 Score=58.07 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=49.3
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..++++|.+ +..++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----------NNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----------CeEEEEEEHHHhhc
Confidence 468899987 78899999999999999999888899999987 89999999999853
No 154
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.03 E-value=0.0011 Score=60.09 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=45.9
Q ss_pred hcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 004817 538 GELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 601 (729)
Q Consensus 538 ~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~ 601 (729)
.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.
T Consensus 71 ~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~vGiit~~di~ 121 (123)
T cd04627 71 LTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----------GNLIGNISVTDVR 121 (123)
T ss_pred cccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----------CcEEEEEeHHHhh
Confidence 356766 88899999999999999999999999999987 8999999999984
No 155
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.01 E-value=0.0015 Score=56.85 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=42.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhh
Q 004817 660 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 711 (729)
Q Consensus 660 ~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~ 711 (729)
++..+.+++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence 4567899999999999999999999999998 7899999999998763
No 156
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.01 E-value=0.0012 Score=58.92 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=49.3
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN------------NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------------CEEEEEEEHHHhhc
Confidence 4578899987 8899999999999999999999999999986 79999999999864
No 157
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.96 E-value=0.0013 Score=74.50 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=53.5
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 603 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~ 603 (729)
+.+++|+|++.++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----------g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----------GNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEhHHHHhc
Confidence 46799999865578899999999999999999999999999987 899999999999874
No 158
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=96.96 E-value=0.0011 Score=71.69 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=52.5
Q ss_pred hccCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 649 MYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 649 ~~~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
..++++++|.+ ++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+||.+|+.+...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-----~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-----NMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-----CCcEEEEEecHHHHHHHh
Confidence 34678899987 8899999999999999999999888888887 799999999999976543
No 159
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.95 E-value=0.0016 Score=57.97 Aligned_cols=57 Identities=21% Similarity=0.463 Sum_probs=50.1
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.+.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++..|+.+
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDK-----------GKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEEHHHhhc
Confidence 34568889987 88999999999999999998888889999886 89999999999853
No 160
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=96.95 E-value=0.0014 Score=58.28 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=49.5
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.++.++|.+ +..++++++++.++++.+.+.+.+.+||+|++ ++++|+|+..|+++
T Consensus 59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDN-----------GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEEEHHHhhc
Confidence 468899988 78899999999999999999888999999876 89999999999854
No 161
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=96.95 E-value=0.0012 Score=58.61 Aligned_cols=55 Identities=15% Similarity=0.237 Sum_probs=49.4
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.++.++|++ +..++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|++.
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----------~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----------GQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----------CCEEEEEEHHHhcc
Confidence 568899987 88899999999999999999888899999886 89999999999853
No 162
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.91 E-value=0.0018 Score=58.51 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=51.0
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
...++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++++|+++
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----------GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CCEEEEEEHHHhhc
Confidence 45678899988 88999999999999999999888999999886 79999999999864
No 163
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=96.90 E-value=0.0027 Score=58.07 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=45.5
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhh
Q 004817 659 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 659 ~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
+++.++++++++.++.+.|.+.+.+.+||+|+ +++++|++|.+|+++...+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHHH
Confidence 45678999999999999999999999999998 7899999999999976554
No 164
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.89 E-value=0.0018 Score=57.28 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=49.8
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
...+++++|.+ +..++++++++.++++.|.+.+.+.+||+| + ++++|+|+++|+++
T Consensus 54 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----------~~~~Gvvt~~di~~ 109 (110)
T cd04595 54 GHAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----------GRLVGIVTRTDLLR 109 (110)
T ss_pred ccCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----------CEEEEEEEhHHhhc
Confidence 34678899988 888999999999999999999999999998 5 89999999999853
No 165
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.89 E-value=0.0058 Score=67.00 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=96.1
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 625 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 625 (729)
+.+.+.+..++.++...+.+.+++.+||.|.+ .+.++.+++.+-+++.+......... ......
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----------~~~v~~ilt~~rIl~~l~~~~~~~~~------~~~l~~ 226 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----------TGEVLYILTQRRILKFLWLNGRLLPL------PSLLSK 226 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeeccc----------ccceeeehhHHHHHHHHHHhhccccc------HHHhhC
Confidence 44889999999999999999999999999842 26999999999998877543211100 000111
Q ss_pred hhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEeh
Q 004817 626 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 705 (729)
Q Consensus 626 ~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~ 705 (729)
+..|+. +. +......+.+++++.+++++|.+.+...+||+|+ +|+.+|++++
T Consensus 227 s~~dl~----------ig-------------~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~ 278 (381)
T KOG1764|consen 227 SLSDLG----------IG-------------TWSNIASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSR 278 (381)
T ss_pred CHHHhC----------cc-------------hhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceeh
Confidence 111111 10 1234668899999999999999999999999998 8889999999
Q ss_pred hhhhhhhhhhhcCCc
Q 004817 706 QDLRAFNILTAFPHL 720 (729)
Q Consensus 706 ~Dll~~~~~~~~~~~ 720 (729)
.|+.....+.-...+
T Consensus 279 ~Dv~~l~~~~~~~~~ 293 (381)
T KOG1764|consen 279 FDVIHLAREGTYNNL 293 (381)
T ss_pred hhhhhhhhcCccCcc
Confidence 999887666555443
No 166
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=96.88 E-value=0.002 Score=56.58 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=48.1
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+++++|.+ ....+++++++.++++.|.+.+.+.+||+|++ ++++|+|+++|+.+
T Consensus 52 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEP--FKVTVSVDDDLRIVLSRMFAHDMSWLPCVDED-----------GRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhccc--CCEEECCCCCHHHHHHHHHHCCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence 47788877 77789999999999999999999999999886 89999999999854
No 167
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.88 E-value=0.0016 Score=57.75 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=48.7
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.+.++|.. ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+
T Consensus 57 ~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~ 110 (111)
T cd04639 57 PVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----------GRLVGLVTLENVGE 110 (111)
T ss_pred cHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 57888987 88999999999999999999888999999886 79999999999853
No 168
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=96.88 E-value=0.0019 Score=57.12 Aligned_cols=57 Identities=23% Similarity=0.408 Sum_probs=50.3
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
...+++++|.+ +..++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+++
T Consensus 54 ~~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~di~~ 110 (111)
T cd04611 54 LQTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----------GELLGLLSQTDLLQ 110 (111)
T ss_pred CCcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----------CcEEEEEEhHHhhc
Confidence 34668899987 88899999999999999998888889999887 89999999999853
No 169
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.87 E-value=0.0012 Score=58.95 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=48.4
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 601 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~ 601 (729)
+.++.++|.+..+..++.+++++.++++.|.+++.+.+||+|++ ++++|+++.+|++
T Consensus 56 ~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~-----------~~~~Gvl~~~di~ 112 (114)
T cd04801 56 QTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDS-----------GQVIGLITEADLL 112 (114)
T ss_pred ccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCC-----------CcEEEEEecccee
Confidence 34677888652246689999999999999999999999999886 7999999999885
No 170
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=96.87 E-value=0.0013 Score=70.96 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=53.3
Q ss_pred ccCccccccCC--CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 650 YIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 650 ~~~v~~im~~~--~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
..+++++|+++ +.++++++++.++.+.|.+.+...+||+|+ +|+++|+||.+|+.+...
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-----~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-----QQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEecHHHHHHHHh
Confidence 46799999988 899999999999999999999999999998 799999999999876543
No 171
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=96.86 E-value=0.0019 Score=56.90 Aligned_cols=55 Identities=24% Similarity=0.347 Sum_probs=49.1
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..+.++|.+ +..++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|+++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----------GKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCC-----------CeEEEEEehHHhhc
Confidence 357888987 88899999999999999999888999999987 89999999999853
No 172
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.86 E-value=0.0018 Score=58.41 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=50.9
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
...++.++|.+ +..++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----------DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CcEEEEEEhHHhhc
Confidence 45678889987 88899999999999999999999999999887 89999999999864
No 173
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.85 E-value=0.0022 Score=59.66 Aligned_cols=56 Identities=20% Similarity=0.427 Sum_probs=50.1
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
...+++++|.+ ++..+++++++.++.+.|.+.+++.+||+++ ++++|+|+++|+++
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------------~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN------------DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------------CEEEEEEEHHHHhh
Confidence 45679999988 8889999999999999999999999999986 69999999999864
No 174
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=96.85 E-value=0.0019 Score=57.34 Aligned_cols=56 Identities=14% Similarity=0.389 Sum_probs=50.4
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecC-CCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE-GVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~-~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..++.++|++ +..++++++++.++++.|.+.+.+.+||+|+ + ++++|+++.+|++.
T Consensus 57 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~-----------~~~~Gvvt~~di~~ 113 (114)
T cd04613 57 LVVASDIMTK--PPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDP-----------GKLLGILSRSDLLS 113 (114)
T ss_pred cEEHHHhccC--CCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCC-----------CEEEEEEEhHHhhc
Confidence 3678899988 8899999999999999999999999999987 6 89999999999853
No 175
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=96.82 E-value=0.0022 Score=57.34 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=47.3
Q ss_pred cchhcccccCCCeeEecC--cccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSG--IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~--~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..++++|.+ +..++.. ++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.+
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----------~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----------GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----------CeEEEEEEHHHhhc
Confidence 347889987 6666755 9999999999999999999999877 89999999999853
No 176
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=96.82 E-value=0.002 Score=56.87 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=48.0
Q ss_pred ccchhcccccCCCeeEecC-cccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSG-IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~-~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.++.++|.. +...+.+ ++++.++++.|.+.+.+.+||+|++ ++++|+|+++|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----------GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----------CCEEEEEEhhhhhc
Confidence 3578889976 6666677 9999999999999999999999876 89999999999853
No 177
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.82 E-value=0.0021 Score=58.35 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=50.1
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..++.++|.+ +..++++++++.++.+.|.+.+.+.+||+|++ ++++|+|+++|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----------~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----------GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CcEEEEEEHHHhhc
Confidence 4568889987 89999999999999999999998999999876 79999999999864
No 178
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=96.82 E-value=0.0033 Score=45.85 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=41.2
Q ss_pred eeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 004817 547 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 604 (729)
Q Consensus 547 ~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l 604 (729)
+.++.+++++.++.+.|.+.+.+.+||++++ ++++|+++.+++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----------GRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----------CeEEEEEEHHHHHHhh
Confidence 4578899999999999999899999999886 8999999999997643
No 179
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.80 E-value=0.0023 Score=56.74 Aligned_cols=55 Identities=24% Similarity=0.544 Sum_probs=48.8
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|+ ++++|+|+++|+++
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~di~~ 111 (112)
T cd04802 57 EVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDD------------DELVGIVTTTDIVM 111 (112)
T ss_pred cCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------------CEEEEEEEhhhhhc
Confidence 4578899987 8889999999999999999999889999986 58999999999853
No 180
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.78 E-value=0.002 Score=59.52 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=49.8
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+| + ++++|+|+++|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----------g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----------GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----------CEEEEEEEhHhhhc
Confidence 4578899988 889999999999999999999999999999 5 89999999999854
No 181
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.78 E-value=0.0034 Score=55.48 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=44.3
Q ss_pred CCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 659 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 659 ~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
+++..+++++++.++.+.|.+.+.+.+||+|+ +|+++|++|.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-----DGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-----CCcEEEEEeHHHHHHHHh
Confidence 45668899999999999999999999999998 789999999999986543
No 182
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.77 E-value=0.0023 Score=56.83 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=49.3
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.++.++|.+ +..++++++++.++++.|.+.+.+.+||+|++ ++++|++++.|+++
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----------GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence 358899988 88899999999999999999888999999876 89999999999854
No 183
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.76 E-value=0.0029 Score=56.06 Aligned_cols=55 Identities=22% Similarity=0.384 Sum_probs=49.1
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..+++++|.+ ++.++++++++.++++.|.+.+.+.+||+++ ++++|+|+.+|+++
T Consensus 58 ~~~~~~~~~~--~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------------~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTR--NVITVTPDDTVDEAMALMTERRFRHLPVVDG------------GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCC--CcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------------CEEEEEEEHHHhhc
Confidence 4578899987 8899999999999999999998889999986 69999999999853
No 184
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=96.76 E-value=0.0025 Score=56.30 Aligned_cols=55 Identities=18% Similarity=0.306 Sum_probs=49.0
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.++.++|.+ +..++++++++.++++.|.+.+.+.+||+|++ +++.|+|+.+|+++
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----------GRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEEhHHhhc
Confidence 457788877 88999999999999999998888999999886 89999999999853
No 185
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=96.73 E-value=0.003 Score=55.76 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=49.4
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.++.++|.+ ++.++.+++++.++++.|.+.+.+.+||+|++ ++++|+++..|+.+
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDS-----------GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----------CCEEEEEEHHHhhh
Confidence 467788988 89999999999999999999988999999886 89999999999853
No 186
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=96.72 E-value=0.0029 Score=56.08 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=48.8
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..+++++|.+ +...+++++++.++++.|.+++...+||+|+ ++++|+|+.+|+.+
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG------------GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC------------CEEEEEEEhHHhhc
Confidence 3468889987 8889999999999999999999999999986 79999999999853
No 187
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.71 E-value=0.0039 Score=55.29 Aligned_cols=49 Identities=22% Similarity=0.230 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 660 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 660 ~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
++.++++++++.++.+.|.+.+.+++||+|+ +++++|++|..|+++...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~~l~~~~~ 50 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-----DERPIGIVTERDIVRAVA 50 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEeeHHHHHHHHh
Confidence 3567899999999999999999999999998 799999999999987543
No 188
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.71 E-value=0.0027 Score=56.46 Aligned_cols=55 Identities=22% Similarity=0.434 Sum_probs=48.8
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.++.++|.+ +..++++++++.++++.|.+.+.+.+||+|+ ++++|+|+.+|+.+
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTT--EVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------------GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhcc--CceEECCCCcHHHHHHHHHHhCCCccCEEEC------------CEEEEEEEHHHHhc
Confidence 3468899987 7889999999999999999998888999986 79999999999864
No 189
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=96.71 E-value=0.003 Score=55.94 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=49.2
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+++ ++++|+++.+|+++
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD------------GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhc
Confidence 3568899988 8899999999999999999999999999986 69999999999864
No 190
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=96.70 E-value=0.0024 Score=66.89 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=52.9
Q ss_pred ccCccccccCC-CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhh
Q 004817 650 YIDLHPLTNTT-PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 712 (729)
Q Consensus 650 ~~~v~~im~~~-~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~ 712 (729)
.++++++|+++ +.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++..|+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHH
Confidence 46788999888 889999999999999999999999999998 79999999999998754
No 191
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.69 E-value=0.003 Score=57.67 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=45.4
Q ss_pred cccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 539 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 539 dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.|.+ +..++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----------~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----------GKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----------CCEEEEEEHHHHhc
Confidence 45666 78899999999999999999988999999987 89999999999853
No 192
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.69 E-value=0.003 Score=71.25 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=53.7
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 606 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~ 606 (729)
..++|+|++ +++++++++++.|+++.|.+++.+.+||+|++ ++++|+|+++|+++....
T Consensus 148 ~~V~diMt~--~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~-----------g~lvGIIT~~DIl~~~~~ 206 (479)
T PRK07807 148 TQVRDVMST--DLVTLPAGTDPREAFDLLEAARVKLAPVVDAD-----------GRLVGVLTRTGALRATIY 206 (479)
T ss_pred CCHHHhccC--CceEECCCCcHHHHHHHHHhcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence 358899998 99999999999999999999999999999987 899999999999886543
No 193
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=96.66 E-value=0.0033 Score=71.47 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=54.9
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 606 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~ 606 (729)
+.+++++|++..+++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+.+.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----------g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----------GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence 46799999873238899999999999999999999999999987 899999999999987654
No 194
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.66 E-value=0.003 Score=56.87 Aligned_cols=57 Identities=28% Similarity=0.591 Sum_probs=50.3
Q ss_pred ccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 532 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 532 l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
....++.++|.+ +..++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+++
T Consensus 64 ~~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~dl~~ 120 (121)
T cd04633 64 IRNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD------------GKLVGIVTRTDILR 120 (121)
T ss_pred hhccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC------------CEEEEEEEHHHhhc
Confidence 345678899987 8899999999999999999999999999986 69999999999853
No 195
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=96.64 E-value=0.0046 Score=55.63 Aligned_cols=49 Identities=33% Similarity=0.420 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 660 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 660 ~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|++|..|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-----~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-----DGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHH
Confidence 3467899999999999999999999999998 789999999999988664
No 196
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=96.63 E-value=0.0029 Score=71.61 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=54.1
Q ss_pred hccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 649 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 649 ~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
..++++++|++++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+++...
T Consensus 333 ~~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 333 KNATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALF 392 (454)
T ss_pred ccCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHh
Confidence 346788999999999999999999999999999999999998 789999999999987554
No 197
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=96.63 E-value=0.0049 Score=55.06 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=43.8
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 660 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 660 ~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
++.++.+++++.++.+.|.+.+...+||+|+ +|+++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-----DGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-----CCCEEEEEEHHHHHHHHh
Confidence 4567899999999999999999999999998 799999999999987553
No 198
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.63 E-value=0.0043 Score=55.34 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=43.3
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
+.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+++...
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLDK-----EGKYVGTISLTDILWKLK 50 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeECC-----CCcEEEEEeHHHHHHHhh
Confidence 457899999999999999999999999998 789999999999987654
No 199
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.62 E-value=0.0039 Score=57.35 Aligned_cols=55 Identities=22% Similarity=0.436 Sum_probs=49.0
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
..++.++|.+ ++..+++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+++
T Consensus 77 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------------~~~iGvit~~dl~~ 131 (132)
T cd04636 77 GKKVEEIMTK--KVITVDEDTTIEDVARIMSKKNIKRLPVVDD------------GKLVGIISRGDIIR 131 (132)
T ss_pred CCCHHHhccC--CceEECCCCcHHHHHHHHHHCCCCeeEEEEC------------CEEEEEEEHHHhhc
Confidence 3478899988 8899999999999999999989899999987 79999999999864
No 200
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.61 E-value=0.0035 Score=55.53 Aligned_cols=53 Identities=17% Similarity=0.418 Sum_probs=48.0
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 601 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~ 601 (729)
.++.++|.+ ++.++.+++++.++++.|.+++.+.+||+|+ ++++|+|++.|++
T Consensus 57 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~di~ 109 (111)
T cd04626 57 KKVFNIVSQ--DVFYVNEEDTIDEALDIMREKQIGRLPVVDD------------NKLIGVVRTKDIL 109 (111)
T ss_pred CcHHHHhcC--CcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEhHHhc
Confidence 468888987 8889999999999999999999999999986 6899999999985
No 201
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=96.60 E-value=0.0037 Score=70.47 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=53.7
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 606 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~ 606 (729)
.+++++|++ +++++++++++.|+++.|.+++.+.+||+|++ ++++|+|+++|+++....
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----------g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----------GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHhC
Confidence 468999998 89999999999999999999999999999977 899999999999886543
No 202
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=96.59 E-value=0.0037 Score=54.89 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=46.9
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
++.++|.+ +..++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+..
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------------GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------------CEEEEEEEHHHhhc
Confidence 46678877 7889999999999999999999999999984 79999999999853
No 203
>COG0517 FOG: CBS domain [General function prediction only]
Probab=96.59 E-value=0.0039 Score=55.59 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=48.2
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhc-CCCCeeeeecCCCCCCCCCCCCCc-eEEEeEeHHHH
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRN-TTHNGFPVLDEGVVPPSGLANVAT-ELHGLILRAHL 600 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~-~~~~~~PVvd~~~~~~~~~~~~~~-~lvGiIs~~dl 600 (729)
+++++|.+ ++.++.+++++.++.+.|.+ ++.+.+||+|++ + +++|++++.|+
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----------~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----------GGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----------CCeEEEEEEHHHc
Confidence 68899988 88999999999999999999 799999999986 6 99999999987
No 204
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.59 E-value=0.0041 Score=54.37 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=48.0
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 601 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~ 601 (729)
.++.++|.+ +..++++++++.++++.|.+++.+.+||+|+ ++++|+|+.+|++
T Consensus 51 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE------------RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------------CEEEEEEEHHHhc
Confidence 357888987 8889999999999999999999999999986 7999999999985
No 205
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.54 E-value=0.0042 Score=56.05 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=49.5
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++++|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDEN-----------GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----------CCEEEEEEHHHhhh
Confidence 468899988 89999999999999999999888899999886 89999999999864
No 206
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=96.50 E-value=0.0049 Score=55.43 Aligned_cols=56 Identities=23% Similarity=0.427 Sum_probs=49.8
Q ss_pred cccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 533 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 533 ~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
...++.++|.+ +..+++++++++++++.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 65 ~~~~v~~~~~~--~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------------~~~~Gvv~~~di~~ 120 (121)
T cd04584 65 LKMPVKEIMTK--DVITVHPLDTVEEAALLMREHRIGCLPVVED------------GRLVGIITETDLLR 120 (121)
T ss_pred cCcCHHHHhhC--CCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------------CEEEEEEEHHHhhc
Confidence 45678899988 8899999999999999999999999999986 68999999999854
No 207
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.47 E-value=0.0068 Score=55.31 Aligned_cols=47 Identities=38% Similarity=0.501 Sum_probs=42.4
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 712 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~ 712 (729)
...+.+++++.++.++|.+.+.+.+||+|+ +++++|++|+.|+.+.+
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVDD-----NGKLTGIVTRHDIVDFV 49 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEECC-----CCcEEEEEEHHHHHHHH
Confidence 457889999999999999999999999998 78999999999998654
No 208
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=96.38 E-value=0.0068 Score=63.38 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=56.9
Q ss_pred cccccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 004817 531 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 606 (729)
Q Consensus 531 ~l~~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~ 606 (729)
...+.++..+|++ ++.++.+.+++..+.+.|--++++-+||+|++ .+++|+|+|+|+++.+..
T Consensus 245 ~~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----------~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 245 KKPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----------NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCC-----------ceEEEEEEHHHHHHHHHH
Confidence 3456678899998 89999999999999999999999999999998 999999999999988754
No 209
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=96.37 E-value=0.0076 Score=53.27 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=43.7
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCC-CcEEEEEehhhhhhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~-g~lvGiIT~~Dll~~~~~ 714 (729)
..++++++++.++.+.|.+.+.+.+||+|+ + ++++|++|..|+.+...+
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-----~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYDG-----DLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEECC-----CCceEEEEEEHHHHHHHHHc
Confidence 457899999999999999999999999998 6 899999999999886644
No 210
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=96.34 E-value=0.0076 Score=54.97 Aligned_cols=45 Identities=31% Similarity=0.480 Sum_probs=41.4
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 710 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~ 710 (729)
+.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+++.+|+.+
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~ 47 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVDS-----DDNFIGVITAVDLLG 47 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEcC-----CCcEEEEEEHHHHhh
Confidence 567899999999999999999999999998 789999999999885
No 211
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=96.33 E-value=0.0079 Score=63.76 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=50.8
Q ss_pred cCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCC-CcEEEEEehhhhhhhh
Q 004817 651 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFN 712 (729)
Q Consensus 651 ~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~-g~lvGiIT~~Dll~~~ 712 (729)
..++++|.+ ...+++++++++++.+.+.+++..++||+++ + ++++|+++.+|++...
T Consensus 67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~-----~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-----DKDHIEGILMAKDLLPFM 126 (292)
T ss_pred CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC-----CCCcEEEEEEHHHHHhHh
Confidence 468899987 5789999999999999999999999999986 4 6899999999998644
No 212
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=96.32 E-value=0.011 Score=51.67 Aligned_cols=50 Identities=32% Similarity=0.292 Sum_probs=44.4
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 715 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~ 715 (729)
+.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++++|+++....+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVDD-----DGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEECC-----CCCEEEEEeHHHHHHHHHhc
Confidence 457889999999999999999999999998 68999999999999876553
No 213
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=96.28 E-value=0.0075 Score=53.24 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=44.2
Q ss_pred ccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 540 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 540 vm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+|.+ ++.++++++++.++.+.|.+++.+.+||+++ ++++|+|+++|+.+
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------------~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------------GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEEC------------CeEEEEEEhhhhhc
Confidence 7777 7889999999999999999999999999964 79999999999854
No 214
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=96.15 E-value=0.01 Score=53.17 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=46.6
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCC---eeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN---GFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~---~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
+.+++++|.+ +..++++++++.++.+.|.+++.. ..||++++ ++++|+|+..|+++
T Consensus 60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvvs~~di~~ 118 (119)
T cd04598 60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----------GRYLGIGTVKDLLR 118 (119)
T ss_pred CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----------CeEEEEEEHHHHhc
Confidence 4568899988 889999999999999999877643 34688776 89999999999853
No 215
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=96.14 E-value=0.0073 Score=67.19 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=51.1
Q ss_pred cCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhh
Q 004817 651 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 651 ~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
..++++|.+ ++.+++.+++++++.+.+.+++..++||.++ +.++++|+++.+|++....
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~----~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE----TIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC----CCCceEEEEEHHHHHhHhc
Confidence 457889976 6789999999999999999999999999975 2368999999999986543
No 216
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=96.10 E-value=0.012 Score=51.77 Aligned_cols=48 Identities=29% Similarity=0.333 Sum_probs=42.6
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhh
Q 004817 661 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 661 ~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
+.++++++++.++.+.|.+.+.+.+||+|+ ++++|++|..|+.+...+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 3 VVSVAPDDTVSQAIERMREYGVSQLPVVDD------GRVVGSIDESDLLDALIE 50 (110)
T ss_pred cEEECCCCcHHHHHHHHHHcCCceeeEeeC------CeeEEEEeHHHHHHHHhc
Confidence 457899999999999999999999999986 889999999999886543
No 217
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.09 E-value=0.0077 Score=68.45 Aligned_cols=60 Identities=18% Similarity=0.336 Sum_probs=53.5
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 604 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l 604 (729)
+.+++|+|+++.+++++++++++.|+.+.|.+++.+.+||+|++ ++++|+|+++|+++..
T Consensus 158 ~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~-----------g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 158 STPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDN-----------GELVALVSRSDLKKNR 217 (495)
T ss_pred CCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEehHhhhcc
Confidence 45789999765578899999999999999999999999999987 8999999999998754
No 218
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=96.09 E-value=0.011 Score=66.69 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=49.9
Q ss_pred cCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCC---CcEEEEEehhhhhh
Q 004817 651 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV---SPVVGILTRQDLRA 710 (729)
Q Consensus 651 ~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~---g~lvGiIT~~Dll~ 710 (729)
.+.++.|.+++.++++++++.+++++|.+++.+.+||+|+ + ++++|+||.+|++.
T Consensus 80 k~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-----~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 80 KRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED-----GDMTGKLVGIITKRDIRF 137 (450)
T ss_pred ccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-----CCCCCeEEEEEEHHHHhh
Confidence 4567778889999999999999999999999999999998 5 69999999999974
No 219
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.01 E-value=0.0084 Score=66.68 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=55.9
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 606 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~ 606 (729)
+..++|+|.+ +++++.++++-+|+.+.+++++.-..||||++ ++++|+|+.+|++..++.
T Consensus 195 ~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----------~~LiG~itiDDiidvi~e 254 (451)
T COG2239 195 DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----------NRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC-----------CceeeeeeHHHHHHHHHH
Confidence 5578999999 89999999999999999999999999999998 999999999999988765
No 220
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=95.97 E-value=0.0082 Score=66.67 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=56.0
Q ss_pred cCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhhhcC
Q 004817 651 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFP 718 (729)
Q Consensus 651 ~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~~~~ 718 (729)
.++.+++..++.+|++++|+.+|.+.|.+.|.+.+.|+|+ +++..||||++|+.++...+..+
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-----~~~~~GIvT~~dl~~~v~~~g~~ 211 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-----SGPLLGIVTRKDLRSRVIADGRS 211 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-----CCCccceeehHHHHHHHHhcCCC
Confidence 3577888899999999999999999999999999999998 89999999999999977764443
No 221
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.82 E-value=0.017 Score=50.69 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=46.4
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.+.++|.+ +..++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+++
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------------GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHhhc
Confidence 46677877 7888999999999999999999889999985 69999999999853
No 222
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=95.80 E-value=0.017 Score=54.04 Aligned_cols=54 Identities=19% Similarity=0.450 Sum_probs=48.6
Q ss_pred ccchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 004817 534 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 601 (729)
Q Consensus 534 ~~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~ 601 (729)
..++.++|.+ +..++++++++.++++.|.+.+.+.+||+++ ++++|+++.+|++
T Consensus 88 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~~Gvvt~~dl~ 141 (143)
T cd04634 88 KMKVRDIMTK--KVITISPDASIEDAAELMVRHKIKRLPVVED------------GRLVGIVTRGDII 141 (143)
T ss_pred cCCHHHHcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHhh
Confidence 4568889988 8899999999999999999999999999986 6899999999985
No 223
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.79 E-value=0.016 Score=60.27 Aligned_cols=113 Identities=20% Similarity=0.224 Sum_probs=77.6
Q ss_pred ccccchhcccccCCCee-EecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 004817 532 MRTLTVGELIDAKPPVI-TLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 610 (729)
Q Consensus 532 l~~~~v~dvm~~~~~~~-~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~~ 610 (729)
.+-++++++|.+ .+.. .-.+...-..+.+.+.+...+.+.+++.+ ++.+|+++..+....
T Consensus 271 ~~VltA~~IM~~-~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-----------~~~~g~v~~~~~~~~------- 331 (386)
T COG4175 271 SRVLTAKDIMRR-PDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-----------NKFVGVVSIDSLVKA------- 331 (386)
T ss_pred hheeeHHHhhcc-cccccccccccccchhhhhhhhccchhhHHHhcc-----------CceeeEEeccchhcc-------
Confidence 345678888874 1221 22223344556666666665555566655 678999986666321
Q ss_pred hhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeec
Q 004817 611 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 690 (729)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~ 690 (729)
.+.+.+..+.+|+++.+......+.+. .++|+|+
T Consensus 332 ---------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde 365 (386)
T COG4175 332 ---------------------------------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDE 365 (386)
T ss_pred ---------------------------------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcC
Confidence 123455678999999999988887766 4889998
Q ss_pred cccCCCCcEEEEEehhhhhhhhhh
Q 004817 691 YEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 691 ~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
+++++|+|++.+++.++..
T Consensus 366 -----~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 366 -----DGRYVGIISRGELLEALAR 384 (386)
T ss_pred -----CCcEEEEecHHHHHHHHhc
Confidence 8999999999999987653
No 224
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.041 Score=62.98 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=57.7
Q ss_pred hccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhhhcC
Q 004817 649 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFP 718 (729)
Q Consensus 649 ~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~~~~ 718 (729)
..+.++++|.++..++..+++..|+.+.+....++.+|+||+ .++--++|.|.|+.+...+..+.-+
T Consensus 586 h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s---~esmiLlGSV~R~~L~~ll~~~ig~ 652 (931)
T KOG0476|consen 586 HTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES---KESMILLGSVARRYLTALLQRHIGP 652 (931)
T ss_pred eEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC---cccceeeehhHHHHHHHHHHhhcCc
Confidence 456789999999999999999999999999888999999987 4466799999999998877765444
No 225
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=95.62 E-value=0.034 Score=61.15 Aligned_cols=50 Identities=12% Similarity=0.235 Sum_probs=42.6
Q ss_pred cCCCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhh
Q 004817 658 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 714 (729)
Q Consensus 658 ~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~ 714 (729)
.+...++++|+++.+++....+++.. ++|+|+ |+++|+|++.++++.+..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~------~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 332 EAAPTVINPDTLMRDVLAARHRTGGA-ILLVEN------GRIVGVIGDDNIYHALLG 381 (382)
T ss_pred cccCcccCCCCcHHHHHHHHhcCCCC-eEEeeC------CeEEEEEeHHHHHHHHhc
Confidence 35566899999999999998888765 888886 999999999999987653
No 226
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=94.81 E-value=0.053 Score=59.30 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=50.2
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 606 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~ 606 (729)
.+++.|.+ +..++++++++.+++..+.++++. +||+|++ ++++|+|++.++++.+..
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 46677777 788999999999999999998888 9999987 999999999999887753
No 227
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=93.19 E-value=0.17 Score=56.16 Aligned_cols=58 Identities=17% Similarity=0.337 Sum_probs=49.2
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhc
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 607 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~ 607 (729)
++++.+.+ +..++++++++.+++..+.+.... +||+|++ ++++|+|++.++++.+...
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----------QQYVGIISKGMLLRALDRE 395 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----------CcEEEEEEHHHHHHHHHhc
Confidence 46666766 788999999999999999886655 9999987 9999999999999887543
No 228
>PRK11573 hypothetical protein; Provisional
Probab=92.95 E-value=0.19 Score=56.00 Aligned_cols=58 Identities=2% Similarity=0.023 Sum_probs=48.7
Q ss_pred cCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhh
Q 004817 651 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 712 (729)
Q Consensus 651 ~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~ 712 (729)
..++++|.+ +...++.+++++++++.+.++++.++||.++ ..++++|++..+|++...
T Consensus 187 ~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~----~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 187 VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLM 246 (413)
T ss_pred CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC----CCCceEEEEEHHHHHHHh
Confidence 457778754 5577899999999999999999999999865 247899999999998754
No 229
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=92.24 E-value=0.14 Score=50.98 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=52.1
Q ss_pred cCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhhhc
Q 004817 651 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 717 (729)
Q Consensus 651 ~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~~~ 717 (729)
+.++|+|-+ ...++..++++.+....+.+....+.||+.+ ..+++.||+-.+|+++++.....
T Consensus 67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e----dkD~v~GIL~AKDLL~~~~~~~~ 131 (293)
T COG4535 67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE----DKDHVEGILLAKDLLPFMRSDAE 131 (293)
T ss_pred hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccC----CchhhhhhhhHHHHHHHhcCCcc
Confidence 457777754 4467889999999999999999999999965 25789999999999998776544
No 230
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=91.75 E-value=0.28 Score=55.08 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=52.2
Q ss_pred cCccccccC--CCceecCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhhh
Q 004817 651 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 716 (729)
Q Consensus 651 ~~v~~im~~--~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~~ 716 (729)
..++++|.+ +...++.+++.+++.+.+.++++.++||.++ ..+.++|+++.+|++++..+..
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~----~~D~iiGiv~~Kdll~~~~~~~ 269 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG----DLDNIIGIVHVKDLLRALLDGQ 269 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC----CCCcEEEEEEHHHHHHHHhcCc
Confidence 457788864 4566888999999999999999999999983 2678999999999999877653
No 231
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=89.93 E-value=0.34 Score=52.00 Aligned_cols=56 Identities=20% Similarity=0.337 Sum_probs=50.0
Q ss_pred cchhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 004817 535 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 603 (729)
Q Consensus 535 ~~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~ 603 (729)
.-+.|+|.+ +.++.+.+.+++++-+.+++.+...+||+|++ ++++.++++.||.+.
T Consensus 171 ~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----------gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 171 LLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----------GELVAMLSRTDLMKN 226 (503)
T ss_pred chhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccC-----------Cceeeeeehhhhhhh
Confidence 457789988 66888899999999999999999999999998 999999999999664
No 232
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=88.16 E-value=0.73 Score=52.45 Aligned_cols=128 Identities=17% Similarity=0.138 Sum_probs=84.6
Q ss_pred cccccchhcccccCCCeeEecCcccHH-HHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchh
Q 004817 531 WMRTLTVGELIDAKPPVITLSGIEKVS-QIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 609 (729)
Q Consensus 531 ~l~~~~v~dvm~~~~~~~~v~~~~~v~-~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~~~~ 609 (729)
.+....++|+|++-.++..++.+..+. +......+.+++.+||.+.+ ...+.-+++....+ ..+....
T Consensus 200 ~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~---------~~~~i~~~L~~~~~-~~~~~~~- 268 (498)
T KOG2118|consen 200 ELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE---------PKNKIGGLLVMNLL-RLLQVEV- 268 (498)
T ss_pred HHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc---------ccchhhHHHHhhhh-hhhcccc-
Confidence 466788999999877787888777776 44444568899999999875 22333332322222 1111000
Q ss_pred hhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceecCCCCHHHHHHHHHHcCCcEEEEee
Q 004817 610 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP 689 (729)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~f~~~~~~~lpVvd 689 (729)
.....++.+.+......+++++++.+..+.|++.+.+.+.|.+
T Consensus 269 -------------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~ 311 (498)
T KOG2118|consen 269 -------------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN 311 (498)
T ss_pred -------------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec
Confidence 0011335555666777899999999999999987776666555
Q ss_pred ccccCCCCcEEEEEehhhhhhhhh
Q 004817 690 KYEAAGVSPVVGILTRQDLRAFNI 713 (729)
Q Consensus 690 ~~~~~~~g~lvGiIT~~Dll~~~~ 713 (729)
. ..-.++++..|+ +...
T Consensus 312 ~------~~~~~~~~l~~~-~~~~ 328 (498)
T KOG2118|consen 312 G------HVDIFVLTLEDL-EEVV 328 (498)
T ss_pred C------CcceeeEeccch-hhhc
Confidence 3 667899999998 5444
No 233
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=84.07 E-value=5.7 Score=40.78 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=34.9
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhh
Q 004817 665 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 711 (729)
Q Consensus 665 ~~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~ 711 (729)
.....-.+++..+...+...+||+|+ +|+++|.+|+.|++.+
T Consensus 267 ~~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 267 LEGFVDRDALSDFLARGRSVLPVVDE-----DGRPLGTVTRADLLDE 308 (309)
T ss_pred ccchhhHHHHHHHHhcCCceeEEECC-----CCcEeeEEEHHHHhhh
Confidence 34445556888888899999999999 8999999999999864
No 234
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=83.47 E-value=2.1 Score=47.22 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=43.1
Q ss_pred chhcccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHh
Q 004817 536 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 605 (729)
Q Consensus 536 ~v~dvm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~ 605 (729)
++.+ +.. +..++++++++.|++....++++ .++|+|+ |+++|+|++.++++.+.
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------------~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN------------GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------------CeEEEEEeHHHHHHHHh
Confidence 3445 455 67889999999999998776554 4778875 89999999999988764
No 235
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=70.31 E-value=22 Score=38.48 Aligned_cols=50 Identities=12% Similarity=0.119 Sum_probs=42.7
Q ss_pred CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 004817 546 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 606 (729)
Q Consensus 546 ~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~ 606 (729)
++..+++.+++.+-+..|++.+.+--.|||+- |.+.|+||.+|+++.+-.
T Consensus 276 epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-----------G~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 276 EPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-----------GDIQGLVTLEDILEEIVG 325 (423)
T ss_pred CCeecCCCCcHHHHHHHHHHhcceEEEEEecc-----------CcEEeeeeHHHHHHHHhc
Confidence 57889999999999999988777777788876 999999999999876543
No 236
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=66.55 E-value=10 Score=40.19 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=43.0
Q ss_pred ccccCCCeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 004817 540 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 606 (729)
Q Consensus 540 vm~~~~~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~~l~~ 606 (729)
.+.+ ++.++.+++++.+.+....+.+ ..+||+|++ ++++|+|++.+++.++..
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----------~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAP-CPVAVVDED-----------GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCC-CceeEEcCC-----------CcEEEEecHHHHHHHHhc
Confidence 4455 6788999999999988876644 357899988 999999999999887643
No 237
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=58.49 E-value=14 Score=38.05 Aligned_cols=61 Identities=16% Similarity=0.121 Sum_probs=39.8
Q ss_pred cccccchhcccccCC--CeeEecCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 004817 531 WMRTLTVGELIDAKP--PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 602 (729)
Q Consensus 531 ~l~~~~v~dvm~~~~--~~~~v~~~~~v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiIs~~dl~~ 602 (729)
.+...++.+.|.+.. +--.+.....-.+++..+...+...+||+|++ ++++|.|++++++.
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~~l~~ 307 (309)
T COG1125 245 LLSLVSVADAVRRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDED-----------GRPLGTVTRADLLD 307 (309)
T ss_pred ccchhhHHHhhcccccccCCccccchhhHHHHHHHHhcCCceeEEECCC-----------CcEeeEEEHHHHhh
Confidence 345556666665511 01122233444556666666677889999998 99999999999864
No 238
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.32 E-value=56 Score=28.86 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 004817 277 MDIIPVTLIGIIGGIL 292 (729)
Q Consensus 277 ~~l~~~~llGi~~Gl~ 292 (729)
|-++.++++|+++|++
T Consensus 75 wglIv~lllGf~AG~l 90 (116)
T COG5336 75 WGLIVFLLLGFGAGVL 90 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5566777888777654
No 239
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=43.38 E-value=6.3e+02 Score=29.98 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHhccCCCCccchhhhhhhccCChhhhhHHHHhhcccchhhhccCCcchhhhhhhhhhhhhhhhhHHHHHHHHH
Q 004817 157 IGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTA 236 (729)
Q Consensus 157 iGa~ig~~l~~~~~~~~~l~~~~~~~~~~~~~~r~li~~G~aAgiaa~F~APlaG~lF~~E~~~~~~~~~~~~~~~~~~~ 236 (729)
+++.+++-+++ |.-++-|+.+|+.+.-. ...+.+.+++..
T Consensus 350 l~a~iA~sia~----------------------k~g~~pg~~~g~~a~~~------------------~sgflg~Ii~~~ 389 (631)
T PRK09765 350 LAAYTAYSLAD----------------------KPALAPGFAAGLAANMI------------------GSGFLGAVVGGL 389 (631)
T ss_pred HHHHHHHHHhc----------------------ccCcCchhHHHHHHHhc------------------CCccHHHHHHHH
Q ss_pred HHHHHHHHHHHHhhcCCccccCCCc------ceEEeeccCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 004817 237 VVVVVLRAFIEICTSGKCGLFGTGG------LIMFDVSNVPVRYHVMDIIPVTLIGIIGG-ILGGLYNHILHKVLRLYNL 309 (729)
Q Consensus 237 va~~v~~~l~~~~~~~~~~~fg~~~------~~~f~~~~~~~~~~~~~l~~~~llGi~~G-l~g~~f~~~~~~~~~~~~~ 309 (729)
+++.+..++ ...-..+ ...+-+| +...++.+++.= ++|....++...+..+...
T Consensus 390 l~gyv~~~l---------~k~ip~~~~~~~~~~~~~~P----------llt~li~~~l~~~viGp~~~~i~~~l~~~l~~ 450 (631)
T PRK09765 390 IAGYLMRWV---------KNHLRLSSKFNGFLTFYLYP----------VLGTLGAGSLMLFVVGEPVAWINNSLTAWLNG 450 (631)
T ss_pred HHHHHHHHH---------HHHCCCchhhhhhcCEEeeh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCC----cccccCCCCCchhhHHHhhcCchh
Q 004817 310 INQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN----FKQFNCPNGHYNDLATLLLTTNDD 385 (729)
Q Consensus 310 ~~~~~~~~~~~~~~~~gl~~~~i~~~~p~~~~~~~~~~~~~~~~p~~g~~g~----~~~~~~~~~~y~~~~~~~~~~~~~ 385 (729)
+. ...+++.++++|.+++.-. .|-... +...+...|.|+.+........-.
T Consensus 451 l~---~~~~~l~g~iiG~mv~~~m----------------------~gpi~k~a~~~~~~~~~~g~~~~~~~~~~~~~~~ 505 (631)
T PRK09765 451 LS---GSNALLLGAILGFMCSFDL----------------------GGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVS 505 (631)
T ss_pred HH---hhhHHHHHHHHHHHHHHcC----------------------CCccchhHHHHHHHHHhccCchHHHHHHHHHhHh
Q ss_pred HHHhhhcCCCCCCcchhHHHHHHHHH---------HHHHHHHhcCCCCccch----------hHHHHHHHHHHHHHHHHh
Q 004817 386 AVRNIFSSNTPTEFQPSSILIFFILY---------CILGLITFGIAVPSGLF----------LPIILMGSAYGRLLGMAM 446 (729)
Q Consensus 386 ~i~~~~~~~~~~~~~~~~ll~~~~lk---------~~~t~lt~g~G~~GG~f----------~Psl~iGa~~G~~~g~~~ 446 (729)
+.. ..+..++.-| .....++--+|+.=|.+ +|+..+|+.+|.+++.++
T Consensus 506 ~~g-------------~ala~~l~~k~f~~~~k~~~~~a~i~g~~gITEpaIPfgv~~p~~~i~~~~iG~avgG~i~~~~ 572 (631)
T PRK09765 506 AFT-------------VTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAM 572 (631)
T ss_pred HHH-------------HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCcccHHHHHhccchHHHHHHHHHHHHHHHHHHh
Q ss_pred hccCCCccHHHHHHHHHhhhhhhccchhHHHHHHHHHhC--------CcchHHHHHHHHHHHHHHHhhcCCchHHH
Q 004817 447 GSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN--------NLLLLPITMIVLLIAKTVGDSFNPSIYEI 514 (729)
Q Consensus 447 ~~~~~~~~~~~a~vG~aa~~a~~~~~pls~~vl~~Eltg--------~~~~~~p~lia~~va~~v~~~~~~sly~~ 514 (729)
.....+|.++++-+.=+.. ...++..+++.++++-++...+.+..++.
T Consensus 573 --------------------gv~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~a~~~~~~k~~~~~~ 628 (631)
T PRK09765 573 --------------------NIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRRHAVKH 628 (631)
T ss_pred --------------------cCccccCccchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhc
No 240
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=41.27 E-value=1.6e+02 Score=35.83 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004817 276 VMDIIPVTLIGIIGGILGGLYNHILHKVL 304 (729)
Q Consensus 276 ~~~l~~~~llGi~~Gl~g~~f~~~~~~~~ 304 (729)
+.++...++=+++++.+.++|.+.+..+.
T Consensus 112 ~y~~~~~~~e~~l~~~l~~if~~~~~~~~ 140 (764)
T TIGR02865 112 PLDFILSIVEASLSFVLYYIFNYSIPCLK 140 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777788899999999988876654
No 241
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.78 E-value=43 Score=30.51 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004817 280 IPVTLIGIIGGILGGLY 296 (729)
Q Consensus 280 ~~~~llGi~~Gl~g~~f 296 (729)
+..+++|++||++|.++
T Consensus 66 i~~Ii~gv~aGvIg~Il 82 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIIL 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHHHH
Confidence 46788999999999775
No 242
>COG2981 CysZ Uncharacterized protein involved in cysteine biosynthesis [Amino acid transport and metabolism]
Probab=29.69 E-value=6.2e+02 Score=25.86 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=30.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004817 276 VMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQ 312 (729)
Q Consensus 276 ~~~l~~~~llGi~~Gl~g~~f~~~~~~~~~~~~~~~~ 312 (729)
.--+|..+.+.+.+|+...++.+...|+..+...++.
T Consensus 27 fvilpLl~ni~L~~gl~~~~~~~~~~wid~Lm~~iPd 63 (250)
T COG2981 27 FVILPLLLNILLWGGLFWLLFSQALPWIDTLMPGIPD 63 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 3457788889999999999999999999888765543
No 243
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=25.82 E-value=1.4e+02 Score=35.42 Aligned_cols=146 Identities=11% Similarity=0.047 Sum_probs=74.8
Q ss_pred CchHHHHHHhcCC--CCCCCCCCCcccccchhcccccCCCeeEecCccc-HHHHHHHHhcCCCCeeeeecCCCCCCCCCC
Q 004817 509 PSIYEIILELKGL--PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEK-VSQIVDVLRNTTHNGFPVLDEGVVPPSGLA 585 (729)
Q Consensus 509 ~sly~~~l~~~G~--~~~~~~~~~~l~~~~v~dvm~~~~~~~~v~~~~~-v~~a~~~l~~~~~~~~PVvd~~~~~~~~~~ 585 (729)
..+.+.|.+.+.. |.... ....+......+.+.+ +-..+....+ +++..+.+...+ ..+.+.|.+
T Consensus 14 ~~I~~SW~Rc~~~~~p~~~~-~~~~l~~~~~~~~~~~--~~~ll~~a~~~l~~l~~~l~~~~-~~~~l~D~~-------- 81 (638)
T PRK11388 14 PLIATSWERCNKLMKRETWN-VPHQAQGVTFASIYRR--KKALLTLGQAALEDAWEYMADRE-CALLILDET-------- 81 (638)
T ss_pred hHHHHHHHHHHhcCCCcccC-CCCcCCHHHHHHHHHH--hHHHHHHHHHHHHHHHHHhcCCC-cEEEEEcCC--------
Confidence 4566777775532 22111 1122333344455544 3223344344 555555565544 567788887
Q ss_pred CCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhhhhHHhhhhcCcccccccChhhhhhccCccccccCCCceec
Q 004817 586 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVI 665 (729)
Q Consensus 586 ~~~~~lvGiIs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~ 665 (729)
|.++......++.+.+....+.....-.+ +.... ..+. . -+....|..|.
T Consensus 82 ---G~vL~~~g~~~~~~~~~~~~~~~G~~w~E-----------~~~GT-----------naig----~-al~~~~pv~v~ 131 (638)
T PRK11388 82 ---GCILSRNGDPQTLQQLSALGFNDGTYCAE-----------GIIGT-----------NALS----L-AAISGQPVKTM 131 (638)
T ss_pred ---ceEEEEeCCHHHHHHHHHcCCccCCccch-----------hccCc-----------CHHH----H-HHhcCCceEEe
Confidence 99999988888776554322111000000 00000 0000 0 00124555666
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEe
Q 004817 666 ESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 704 (729)
Q Consensus 666 ~~~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT 704 (729)
......+.. ....+...||.|. +|+++|+|+
T Consensus 132 g~EH~~~~~---~~~~c~aaPI~d~-----~G~liGvl~ 162 (638)
T PRK11388 132 GDQHFKQAL---HNWAFCATPVFDS-----KGRLTGTIA 162 (638)
T ss_pred cHHHHHHhc---cCceEEeeEEEcC-----CCCEEEEEE
Confidence 555555443 3456678999998 799999996
No 244
>PF10518 TAT_signal: TAT (twin-arginine translocation) pathway signal sequence; InterPro: IPR019546 The twin-arginine translocation (Tat) pathway serves the role of transporting folded proteins across energy-transducing membranes []. Homologues of the genes that encode the transport apparatus occur in archaea, bacteria, chloroplasts, and plant mitochondria []. In bacteria, the Tat pathway catalyses the export of proteins from the cytoplasm across the inner/cytoplasmic membrane. In chloroplasts, the Tat components are found in the thylakoid membrane and direct the import of proteins from the stroma. The Tat pathway acts separately from the general secretory (Sec) pathway, which transports proteins in an unfolded state []. It is generally accepted that the primary role of the Tat system is to translocate fully folded proteins across membranes. An example of proteins that need to be exported in their 3D conformation are redox proteins that have acquired complex multi-atom cofactors in the bacterial cytoplasm (or the chloroplast stroma or mitochondrial matrix). They include hydrogenases, formate dehydrogenases, nitrate reductases, trimethylamine N-oxide (TMAO) reductases and dimethyl sulphoxide (DMSO) reductases [, ]. The Tat system can also export whole heteroligomeric complexes in which some proteins have no Tat signal. This is the case of the DMSO reductase or formate dehydrogenase complexes. But there are also other cases where the physiological rationale for targeting a protein to the Tat signal is less obvious. Indeed, there are examples of homologous proteins that are in some cases targeted to the Tat pathway and in other cases to the Sec apparatus. Some examples are: copper nitrite reductases, flavin domains of flavocytochrome c and N-acetylmuramoyl-L-alanine amidases []. In halophilic archaea such as Halobacterium almost all secreted proteins appear to be Tat targeted. It has been proposed to be a response to the difficulties these organisms would otherwise face in successfully folding proteins extracellularly at high ionic strength []. The Tat signal peptide consists of three motifs: the positively charged N-terminal motif, the hydrophobic region and the C-terminal region that generally ends with a consensus short motif (A-x-A) specifying cleavage by signal peptidase. Sequence analysis revealed that signal peptides capable of targeting the Tat protein contain the consensus sequence [ST]-R-R-x-F-L-K. The nearly invariant twin-arginine gave rise to the pathway's name. In addition the h-region of Tat signal peptides is typically less hydrophobic than that of Sec-specific signal peptides [, ].
Probab=25.18 E-value=39 Score=21.73 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=18.4
Q ss_pred hhhHHHHhhcccchhhhccCCcc
Q 004817 188 DRRDLITCGSSSGVCAAFRAPVG 210 (729)
Q Consensus 188 ~~r~li~~G~aAgiaa~F~APla 210 (729)
.||+++-.+.+++.++.+..+.+
T Consensus 3 sRR~fLk~~~a~~a~~~~~~~~~ 25 (26)
T PF10518_consen 3 SRRQFLKGGAAAAAAAALGGCAG 25 (26)
T ss_pred cHHHHHHHHHHHHHHHHhccccC
Confidence 48889988888888888877654
No 245
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=24.87 E-value=64 Score=36.54 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHcCCcEEEEeeccccCCCCcEEEEEehhhhhhhhhhhhcCCcc
Q 004817 668 MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLE 721 (729)
Q Consensus 668 ~~l~~a~~~f~~~~~~~lpVvd~~~~~~~g~lvGiIT~~Dll~~~~~~~~~~~~ 721 (729)
..++.+.+...+.|-.-++|+++ +++.|+|..+|+++.-.++.+.++.
T Consensus 413 ~~l~~~~~~vs~~GGTPL~V~~~------~~~~GVI~LkDivK~Gi~ERf~elR 460 (681)
T COG2216 413 EDLDAAVDEVSRLGGTPLVVVEN------GRILGVIYLKDIVKPGIKERFAELR 460 (681)
T ss_pred HHHHHHHHHHHhcCCCceEEEEC------CEEEEEEEehhhcchhHHHHHHHHH
Confidence 45788888889999999999987 9999999999999876666665544
No 246
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.28 E-value=1.2e+02 Score=26.05 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 004817 432 ILMGSAYGRLLGMAMG 447 (729)
Q Consensus 432 l~iGa~~G~~~g~~~~ 447 (729)
+.+||.+|.++|.+-.
T Consensus 32 lti~aiVg~i~Gf~~Q 47 (101)
T KOG4112|consen 32 LTIGAIVGFIYGFAQQ 47 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567778888886654
Done!