Query 004820
Match_columns 728
No_of_seqs 332 out of 812
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 06:49:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004820.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004820hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 6.3E-30 2.1E-34 238.6 14.4 114 36-149 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 1.8E-16 6.3E-21 150.8 12.7 96 41-146 46-143 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 3.3E-13 1.1E-17 120.7 11.3 94 41-145 8-101 (104)
4 1na6_A Ecorii, restriction end 95.9 0.012 4.2E-07 64.1 7.5 92 41-133 18-123 (404)
5 1vd2_A Protein kinase C, IOTA 93.3 0.16 5.5E-06 44.9 6.6 55 608-670 6-61 (89)
6 2ktr_A Sequestosome-1; autopha 91.3 0.16 5.5E-06 47.0 4.1 61 606-673 18-95 (117)
7 2kkc_A Sequestosome-1; P62, PB 90.9 0.18 6.3E-06 45.5 4.1 61 607-673 4-80 (102)
8 1wmh_B Partitioning defective- 89.5 0.68 2.3E-05 40.8 6.4 68 609-683 7-76 (86)
9 1q1o_A Cell division control p 87.4 1.3 4.3E-05 39.9 6.9 73 608-682 5-85 (98)
10 1oey_J P40-PHOX, neutrophil cy 81.4 2.2 7.4E-05 38.9 5.5 59 617-701 17-79 (107)
11 1pqs_A Cell division control p 78.7 4.3 0.00015 34.9 6.3 58 623-682 6-64 (77)
12 1oey_A P67-PHOX, neutrophil cy 71.3 16 0.00053 31.9 8.0 70 609-687 6-78 (83)
13 2bkf_A Zinc-finger protein NBR 69.6 8.5 0.00029 34.0 6.0 52 610-670 8-60 (87)
14 1wj6_A KIAA0049 protein, RSGI 67.3 8.7 0.0003 34.8 5.7 62 609-681 15-77 (101)
15 2k8i_A SLYD, peptidyl-prolyl C 66.8 22 0.00075 34.3 8.9 102 122-238 3-114 (171)
16 2kfw_A FKBP-type peptidyl-prol 65.8 9.7 0.00033 37.7 6.4 102 122-238 3-114 (196)
17 3cgm_A SLYD, peptidyl-prolyl C 60.5 29 0.001 32.9 8.4 100 122-238 3-110 (158)
18 2kr7_A FKBP-type peptidyl-prol 53.0 57 0.002 30.5 9.0 105 119-238 4-119 (151)
19 4dt4_A FKBP-type 16 kDa peptid 50.2 48 0.0016 32.0 8.1 106 121-238 24-138 (169)
20 3pr9_A FKBP-type peptidyl-prol 40.0 1.6E+02 0.0053 27.9 9.8 105 122-238 2-123 (157)
21 3o27_A Putative uncharacterize 35.4 34 0.0011 28.9 3.7 41 105-146 23-64 (68)
22 1e8p_A Endoglucanase, dockerin 34.7 12 0.0004 29.5 0.9 14 656-669 19-32 (46)
23 3s6w_A Tudor domain-containing 32.3 41 0.0014 26.1 3.7 28 208-238 1-28 (54)
24 2jng_A Cullin-7, CUL-7; P53 bi 31.8 44 0.0015 30.4 4.2 67 198-278 12-78 (105)
25 2e63_A KIAA1787 protein; struc 31.6 29 0.00098 33.6 3.2 51 87-142 86-138 (170)
26 4a4f_A SurviVal of motor neuro 30.1 52 0.0018 26.6 4.1 29 207-238 7-35 (64)
27 1mhn_A SurviVal motor neuron p 30.0 54 0.0018 26.0 4.1 28 208-238 3-30 (59)
28 3p8d_A Medulloblastoma antigen 27.7 69 0.0024 26.8 4.4 53 207-277 5-57 (67)
29 3m7a_A Uncharacterized protein 25.9 57 0.0019 30.7 4.1 47 81-130 83-140 (140)
30 2k75_A Uncharacterized protein 25.5 1.1E+02 0.0039 26.9 5.8 45 82-146 40-88 (106)
31 2equ_A PHD finger protein 20-l 25.0 65 0.0022 27.3 3.9 39 207-259 8-46 (74)
32 1g5v_A SurviVal motor neuron p 23.2 77 0.0026 27.6 4.1 28 208-238 10-37 (88)
33 3pie_A 5'->3' exoribonuclease 22.6 87 0.003 38.7 5.8 48 206-261 1063-1110(1155)
34 2cbp_A Cucumber basic protein; 21.7 38 0.0013 29.7 1.9 19 116-134 18-36 (96)
35 3qii_A PHD finger protein 20; 21.3 97 0.0033 27.2 4.3 54 207-278 20-73 (85)
36 1ix5_A FKBP; ppiase, isomerase 20.9 2.2E+02 0.0075 26.5 7.1 106 122-238 2-124 (151)
37 2yue_A Protein neuralized; str 20.1 61 0.0021 31.2 3.1 20 123-142 107-126 (168)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.96 E-value=6.3e-30 Score=238.59 Aligned_cols=114 Identities=29% Similarity=0.462 Sum_probs=104.9
Q ss_pred CCCCCceeEEEecCccCCCCCCceeechhhHhhhCCCCCCCCCCCCcEEEEeecCCCeEEeEEEEeCCCCceeeccchhh
Q 004820 36 PSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSV 115 (728)
Q Consensus 36 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~FR~iyr~~~rrhlLTtGWs~ 115 (728)
..+....+|+|+||+|||++++||+||+++|+.|||.++..+.+++++|.++|.+|++|+|||+||+++++|+|++||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 44566889999999999999999999999999999999987777889999999999999999999999999999999999
Q ss_pred hhhccCCcCCCEEEEEEcc--CCcEEEEEEecCCCC
Q 004820 116 FVSAKRLVAGDSVLFIWNE--KNQLLLGIRRAIRPP 149 (728)
Q Consensus 116 FV~~K~L~aGD~VvF~R~~--~g~L~vGiRRa~r~~ 149 (728)
||++|+|++||+|+|+|.+ +++|+||+||+.++.
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999986 467999999998765
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.68 E-value=1.8e-16 Score=150.81 Aligned_cols=96 Identities=20% Similarity=0.291 Sum_probs=85.5
Q ss_pred ceeEEEecCccCCCCCCceeechhhHhhhCCCCCCCCCCCCcEEEEeecCCCeEEeEEEEeCCCCceeeccchhhhhhcc
Q 004820 41 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 120 (728)
Q Consensus 41 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~FR~iyr~~~rrhlLTtGWs~FV~~K 120 (728)
..+|+|+||+|||.+..++.||+++|+.+||..+ ..+.+.|. |+.|.|+|+|++. +++|++||..||+++
T Consensus 46 ~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~dn 115 (146)
T 4i1k_A 46 NPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLEN 115 (146)
T ss_dssp SCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHHT
T ss_pred CCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHHc
Confidence 5699999999999887789999999999999753 57888887 6999999999974 799999999999999
Q ss_pred CCcCCCEEEEEEccCC--cEEEEEEecC
Q 004820 121 RLVAGDSVLFIWNEKN--QLLLGIRRAI 146 (728)
Q Consensus 121 ~L~aGD~VvF~R~~~g--~L~vGiRRa~ 146 (728)
+|++||.++|...++. .+.|.|-|+.
T Consensus 116 ~L~~GD~cvFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 116 NLGEGDVCVFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp TCCTTCEEEEEECSSSSCEEEEEEECCC
T ss_pred CCCCCCEEEEEEecCCceEEEEEEEecc
Confidence 9999999999998765 5888988875
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.45 E-value=3.3e-13 Score=120.68 Aligned_cols=94 Identities=21% Similarity=0.363 Sum_probs=81.0
Q ss_pred ceeEEEecCccCCCCCCceeechhhHhhhCCCCCCCCCCCCcEEEEeecCCCeEEeEEEEeCCCCceeeccchhhhhhcc
Q 004820 41 TNYFCKTLTASDTSTHGGFSVPRRAAEKVFPSLDFSLQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAK 120 (728)
Q Consensus 41 ~~~F~K~LT~SDv~~~grfsVPk~~Ae~~fP~Ld~~~~~p~q~L~~~D~~G~~W~FR~iyr~~~rrhlLTtGWs~FV~~K 120 (728)
...|.|+|+++|. ..++.||++.++.+.+.+ ...+.++|..|+.|+++|.+++ ++++|+.||..||+++
T Consensus 8 ~p~F~K~l~~~~~--~~~L~IP~~F~~~~~~~~-------~~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~~ 76 (104)
T 1yel_A 8 EVQFMKPFISEKS--SKSLEIPLGFNEYFPAPF-------PITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKDN 76 (104)
T ss_dssp CEEEEEECCHHHH--TTCEECCHHHHTTCCCCC-------CSEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHHH
T ss_pred CCCEEEEECCCCc--cceEECCHHHHHhcCccC-------CCEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHHc
Confidence 4589999999994 569999999998866543 3579999999999999999774 5789999999999999
Q ss_pred CCcCCCEEEEEEccCCcEEEEEEec
Q 004820 121 RLVAGDSVLFIWNEKNQLLLGIRRA 145 (728)
Q Consensus 121 ~L~aGD~VvF~R~~~g~L~vGiRRa 145 (728)
+|++||.++|...++..+.|-|=|.
T Consensus 77 ~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 77 NLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp TCCTTCEEEEEECSSSEEEEEEECS
T ss_pred CCCCCCEEEEEEcCCCeEEEEEECC
Confidence 9999999999998888888877553
No 4
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=95.90 E-value=0.012 Score=64.09 Aligned_cols=92 Identities=24% Similarity=0.344 Sum_probs=66.4
Q ss_pred ceeEEEecCccCCCCCC----ceeechhhHhhhCCCCCC-CCCCCCcEEEE--eecCCCeEEeEEEEeC------CCCce
Q 004820 41 TNYFCKTLTASDTSTHG----GFSVPRRAAEKVFPSLDF-SLQPPAQELIA--RDLHDVEWKFRHIFRG------QPKRH 107 (728)
Q Consensus 41 ~~~F~K~LT~SDv~~~g----rfsVPk~~Ae~~fP~Ld~-~~~~p~q~L~~--~D~~G~~W~FR~iyr~------~~rrh 107 (728)
...|+|.|++.|++..| +|.+|+.....+||.|+. .+..|.+.+.+ -|...-++.++.+|.+ ++..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 56899999999999764 799999889999999983 34455555443 3444455599999997 45678
Q ss_pred eeccchh-hhhhccCCcCCCEEEEEEc
Q 004820 108 LLTTGWS-VFVSAKRLVAGDSVLFIWN 133 (728)
Q Consensus 108 lLTtGWs-~FV~~K~L~aGD~VvF~R~ 133 (728)
.||. |. .+.=.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 9973 43 2333477788998887643
No 5
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=93.32 E-value=0.16 Score=44.87 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=42.5
Q ss_pred ccEEEEeccCc-ceeeeccCCCCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEcCCCCeEec
Q 004820 608 RTFVKVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 670 (728)
Q Consensus 608 ~~~vKV~m~G~-iGRkvDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EgD~mLv 670 (728)
..-||++-.|. +--+|+ .--+|++|.++|.++|.+. ....+++.|.|.|||+.-+
T Consensus 6 ~vkvK~~~~gdi~~~~v~--~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEeGD~iti 61 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFE--PSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEEGDPCTV 61 (89)
T ss_dssp CEEEEEESSSCEEEEEEC--TTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSSSCCEEC
T ss_pred eEEEEEEeCCeEEEEECC--CCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCCCCcccc
Confidence 35788888994 433444 4569999999999999974 2346999999999997544
No 6
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=91.25 E-value=0.16 Score=47.02 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=43.6
Q ss_pred CCccEEEEeccC-----cceeeeccC-----------CCCChHHHHHHHHhhhc-CCcccCCCCCCCcEEEEEcCCCCeE
Q 004820 606 PTRTFVKVYKSG-----SVGRSLDIS-----------RFSSYNELREELGQMFG-IEGKFEDPLRSGWQLVFVDRENDVL 668 (728)
Q Consensus 606 ~~~~~vKV~m~G-----~iGRkvDL~-----------~~~sY~eL~~~L~~MF~-~~g~l~d~~~s~~~lvY~D~EgD~m 668 (728)
....-||++-.| .==|++-|. .-.+|++|+..+.++|. +. +.+|+|.|.|.|||+.
T Consensus 18 ~~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~-------~~~f~l~YkDEdGDlI 90 (117)
T 2ktr_A 18 MGSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALR-------PGGFQAHYRAERGDLV 90 (117)
T ss_dssp --CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSC-------SSCEEEEEECTTCCEE
T ss_pred cccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccC-------CCcEEEEEECCCCCEE
Confidence 456789999875 122544443 13599999999999995 43 2369999999999987
Q ss_pred ecCCc
Q 004820 669 LLGDD 673 (728)
Q Consensus 669 LvGD~ 673 (728)
-+-.+
T Consensus 91 tISsD 95 (117)
T 2ktr_A 91 AFSSD 95 (117)
T ss_dssp EECSH
T ss_pred EecCH
Confidence 66553
No 7
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=90.94 E-value=0.18 Score=45.52 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=43.0
Q ss_pred CccEEEEeccC-----cceeeeccCC-----------CCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEcCCCCeEec
Q 004820 607 TRTFVKVYKSG-----SVGRSLDISR-----------FSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 670 (728)
Q Consensus 607 ~~~~vKV~m~G-----~iGRkvDL~~-----------~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EgD~mLv 670 (728)
...-||++-.| .-=|.+-|.. ..+|++|+..+.++|.- |. +.+++|.|.|.|||+.-+
T Consensus 4 m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~---l~---~~~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 4 MSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA---LR---PGGFQAHYRAERGDLVAF 77 (102)
T ss_dssp CEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT---SC---SSCEEEEEECTTCCEEEE
T ss_pred ceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc---cC---CCcEEEEEECCCCCEEEe
Confidence 45678888865 2224444432 24899999999999962 11 246999999999998776
Q ss_pred CCc
Q 004820 671 GDD 673 (728)
Q Consensus 671 GD~ 673 (728)
.++
T Consensus 78 SsD 80 (102)
T 2kkc_A 78 SSD 80 (102)
T ss_dssp CSH
T ss_pred cCH
Confidence 654
No 8
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=89.51 E-value=0.68 Score=40.79 Aligned_cols=68 Identities=21% Similarity=0.182 Sum_probs=49.1
Q ss_pred cEEEEeccCccee-eeccCCCCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEcCCCCeEecCC-cchhHHhhcee
Q 004820 609 TFVKVYKSGSVGR-SLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD-DPWEAFVSNVW 683 (728)
Q Consensus 609 ~~vKV~m~G~iGR-kvDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EgD~mLvGD-~PW~~Fv~~v~ 683 (728)
.=||.+-++.+=| ++|-..-.+|++|..-|+++|.+. ...+++.|.|.+||++-+-+ +=..+=+.+++
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~-------~~~f~i~Y~D~dGDLlpInnDdnl~~Al~~a~ 76 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIP-------GLDVLLGYTDAHGDLLPLTNDDSLHRALASGP 76 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCT-------TCCCEEEEECTTSCEEECCSHHHHHHHTTSSS
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCC-------CCCEEEEEECCCCCEeeecCHHHHHHHHHhCC
Confidence 3456666664433 566667789999999999999853 23699999999999998765 34444445555
No 9
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=87.44 E-value=1.3 Score=39.91 Aligned_cols=73 Identities=11% Similarity=0.254 Sum_probs=54.2
Q ss_pred ccEEEEeccC-----cce--eeeccCCCCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEcCCCCeEecCC-cchhHHh
Q 004820 608 RTFVKVYKSG-----SVG--RSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGD-DPWEAFV 679 (728)
Q Consensus 608 ~~~vKV~m~G-----~iG--RkvDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EgD~mLvGD-~PW~~Fv 679 (728)
..-|||+-.. +++ |.|=+..--+|++|...+.+-|++. .-.+- ....+|-|+|.|||+..+++ +=|++-+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~-~~~~i-~~~~klkYkDEdGD~Vtl~sddDl~~A~ 82 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT-HNNNI-SPITKIKYQDEDGDFVVLGSDEDWNVAK 82 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH-CSSCC-CCCCCEEEECSSSCEEEECSHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC-ccccc-cceeEEEEEcCCCCEEEEcCHHHHHHHH
Confidence 3567888653 134 6777788889999999999999975 11111 13579999999999987765 7799888
Q ss_pred hce
Q 004820 680 SNV 682 (728)
Q Consensus 680 ~~v 682 (728)
.++
T Consensus 83 e~~ 85 (98)
T 1q1o_A 83 EML 85 (98)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
No 10
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=81.40 E-value=2.2 Score=38.85 Aligned_cols=59 Identities=31% Similarity=0.335 Sum_probs=47.6
Q ss_pred Ccceeee----ccCCCCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEcCCCCeEecCCcchhHHhhceeEEEEeChhh
Q 004820 617 GSVGRSL----DISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSNVWYIKILSPED 692 (728)
Q Consensus 617 G~iGRkv----DL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EgD~mLvGD~PW~~Fv~~v~ri~Il~~~e 692 (728)
|...|.| ||+.--.|++|..-..+-|.-+ +=.|-|.|.|||+ |||+..++
T Consensus 17 ~~~irdI~veedl~~~P~ykdLl~lmr~~F~~~---------DIaLNYrD~eGDL-----------------IrilddeD 70 (107)
T 1oey_J 17 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQRE---------DIALNYRDAEGDL-----------------VRLLSDED 70 (107)
T ss_dssp EEEEEEEEECSCTTCCCCHHHHHHHHHHHHCCS---------SEEEEEECTTSCE-----------------EECCSHHH
T ss_pred CceeeeEEEccccccCCCHHHHHHHHHHHhccc---------ceeeeeecCCCCE-----------------EEEcchHH
Confidence 3445555 5677789999999999999842 5699999999998 78999999
Q ss_pred hhccccccc
Q 004820 693 VQKMGEQGV 701 (728)
Q Consensus 693 ~~~m~~~~~ 701 (728)
+.-|-.++.
T Consensus 71 v~lmi~~sr 79 (107)
T 1oey_J 71 VALMVRQAR 79 (107)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHhh
Confidence 998877663
No 11
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=78.70 E-value=4.3 Score=34.88 Aligned_cols=58 Identities=14% Similarity=0.362 Sum_probs=43.2
Q ss_pred eccCCCCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEcCCCCeEecC-CcchhHHhhce
Q 004820 623 LDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLG-DDPWEAFVSNV 682 (728)
Q Consensus 623 vDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EgD~mLvG-D~PW~~Fv~~v 682 (728)
|=+..--+|++|...+.+-|++. . .+..+....|-|.|.|||+...+ |+=|++-+.++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~-~-~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNT-H-NNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTT-T-SSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHccc-c-cccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 33455568999999999999974 1 11113467999999999987665 47899888876
No 12
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=71.32 E-value=16 Score=31.91 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=56.1
Q ss_pred cEEEEeccCcceeeeccCCCCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEc-CCCCeEecCCcchhHHhhcee--EE
Q 004820 609 TFVKVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVD-RENDVLLLGDDPWEAFVSNVW--YI 685 (728)
Q Consensus 609 ~~vKV~m~G~iGRkvDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D-~EgD~mLvGD~PW~~Fv~~v~--ri 685 (728)
.=|||+-. +--.|.+..=-+|.+|++.|.+-+.+.++ .=+|-|.| .+|.+++.+|.=++.-...|+ ||
T Consensus 6 ~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~-------~~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~L 76 (83)
T 1oey_A 6 YTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLE-------HTKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCL 76 (83)
T ss_dssp EEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGG-------GCCEEECCTTCSSCEECCTTTHHHHHTTCBTTEE
T ss_pred EEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcc-------eeEEEeeCCCCCCeeccChHHHHHHHHhccCCcE
Confidence 45788777 77788888889999999999999987542 34899999 678888999999998887755 44
Q ss_pred EE
Q 004820 686 KI 687 (728)
Q Consensus 686 ~I 687 (728)
.+
T Consensus 77 tL 78 (83)
T 1oey_A 77 TL 78 (83)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 13
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=69.55 E-value=8.5 Score=33.96 Aligned_cols=52 Identities=12% Similarity=0.194 Sum_probs=40.6
Q ss_pred EEEEeccC-cceeeeccCCCCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEcCCCCeEec
Q 004820 610 FVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLL 670 (728)
Q Consensus 610 ~vKV~m~G-~iGRkvDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EgD~mLv 670 (728)
-.||+-.| ..=--|.-..--++++|...+..+|+++ .++|.|.|.|||-.-|
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~---------~~~ikY~DEenD~v~i 60 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSI 60 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS---------SEEEEEECTTSCEEEE
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC---------ceEEEEEcCCCCEEEE
Confidence 46888888 4333565555678999999999999984 4799999999997544
No 14
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=67.34 E-value=8.7 Score=34.77 Aligned_cols=62 Identities=10% Similarity=0.166 Sum_probs=47.0
Q ss_pred cEEEEeccC-cceeeeccCCCCChHHHHHHHHhhhcCCcccCCCCCCCcEEEEEcCCCCeEecCCcchhHHhhc
Q 004820 609 TFVKVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWEAFVSN 681 (728)
Q Consensus 609 ~~vKV~m~G-~iGRkvDL~~~~sY~eL~~~L~~MF~~~g~l~d~~~s~~~lvY~D~EgD~mLvGD~PW~~Fv~~ 681 (728)
.-.||+-.| ..=--|.-..--++++|...+..+|+++ .++|.|.|.|||-.-|=- +.||-+.
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~---------~~~IkY~DEenD~V~i~S--q~E~eEA 77 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN---------TIQIKYLDEENEEVSINS--QGEYEEA 77 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS---------SBCCEEECTTSCEECCCS--HHHHHHH
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC---------ceEEEEecCCCCEEEEec--HHHHHHH
Confidence 457899999 4333575566779999999999999984 469999999999876633 5555433
No 15
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=66.77 E-value=22 Score=34.26 Aligned_cols=102 Identities=22% Similarity=0.229 Sum_probs=62.2
Q ss_pred CcCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCccc-cCcccchhHHHHHHHHhhcCCeEEEEEeCCCCC------C
Q 004820 122 LVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSVL-SSDSMHIGLLAAAAHAAATNSCFTVFFNPRASP------S 191 (728)
Q Consensus 122 L~aGD~VvF-~R--~~~g~L~vGiRRa~r~~~~~pssv~-s~~sm~~gvla~A~haa~t~~~F~V~Y~PR~s~------s 191 (728)
.+.||.|.+ |+ ..+|+.+=.-+.. .|..+. ....+ +--+-+|......|..++|.--|-... .
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~v-ipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~~~ 75 (171)
T 2k8i_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (171)
T ss_dssp CCTTEEEEEEEEEEETTSCEEEECCSS------SCEEEETTSCSS-CSHHHHHHTTCCTTCEEEEEEETTTSSCCCCTTS
T ss_pred CCCCCEEEEEEEEEECCCCEEeeccCC------cCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEECcHHhcCCCChhh
Confidence 568899877 43 3578766544321 222222 12222 223556777777888888776655433 3
Q ss_pred ccccchhhHHHhhhcCCccccCEEeEeecccccccceeeEEEEEeec
Q 004820 192 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 192 EFVVp~~ky~~a~~~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
-+.||++.+-.. ..+.+||+|.+ ++++. + ..|+|+.|.+
T Consensus 76 v~~v~~~~f~~~---~~~~~G~~~~~--~~~~G--~-~~~~V~~v~~ 114 (171)
T 2k8i_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG--P-VPVEITAVED 114 (171)
T ss_dssp EEEEEGGGGTTS---SCCCTTCEEEE--EETTE--E-EEEEEEEECS
T ss_pred EEEeeHHHCCcc---cCccCCcEEEE--ECCCC--c-EEEEEEEEcC
Confidence 357888877432 36999999985 44543 2 6899999975
No 16
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=65.82 E-value=9.7 Score=37.66 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=62.3
Q ss_pred CcCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCcccc-CcccchhHHHHHHHHhhcCCeEEEEEeCCCC------CC
Q 004820 122 LVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSVLS-SDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PS 191 (728)
Q Consensus 122 L~aGD~VvF-~R--~~~g~L~vGiRRa~r~~~~~pssv~s-~~sm~~gvla~A~haa~t~~~F~V~Y~PR~s------~s 191 (728)
.+.||.|.+ |+ .++|+++-.-+.. .|..++- ...+ +--|-+|......|..++|.--|-.. -.
T Consensus 3 i~~gd~V~v~Y~g~~~dG~~fdss~~~------~P~~f~lG~g~v-ipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~~l 75 (196)
T 2kfw_A 3 VAKDLVVSLAYQVRTEDGVLVDESPVS------APLDYLHGHGSL-ISGLETALEGHEVGDKFDVAVGANDAYGQYDENL 75 (196)
T ss_dssp CCSSCEEEEEEEEEETTTEEEEECCTT------SCCEEESSSSSS-CHHHHHHHSSSCTTCEEEEECSTTTTSSCCCTTT
T ss_pred CCCCCEEEEEEEEEECCCCEEEecCCC------CCEEEEECCCCc-chHHHHHHcCCCCCCEEEEEeCcHHhcCCCChhh
Confidence 678999887 33 3578765543211 2333322 2222 33455666677778888887665432 34
Q ss_pred ccccchhhHHHhhhcCCccccCEEeEeecccccccceeeEEEEEeec
Q 004820 192 EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 192 EFVVp~~ky~~a~~~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
=+.||++.|... ..+.+||+|.+ ++++- .+.++|+.|.+
T Consensus 76 V~~vp~~~f~~~---~~~~~G~~~~~--~~~~G---~~~~~V~~v~~ 114 (196)
T 2kfw_A 76 VQRVPKDVFMGV---DELQVGMRFLA--ETDQG---PVPVEITAVED 114 (196)
T ss_dssp CEEECGGGCCCS---SCCCTTCEEEE--EETTE---EEEEEBCCCCS
T ss_pred EEEEEHHHCCCc---cCcccCCEEEE--ECCCC---cEEEEEEEEcC
Confidence 467888776321 25999999964 44542 67899999975
No 17
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=60.49 E-value=29 Score=32.91 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=61.0
Q ss_pred CcCCCEEEE-EEc-cCCcEEEEEEecCCCCCCCCCccccCcccchhHHHHHHHHhhcCCeEEEEEeCCCC------CCcc
Q 004820 122 LVAGDSVLF-IWN-EKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRAS------PSEF 193 (728)
Q Consensus 122 L~aGD~VvF-~R~-~~g~L~vGiRRa~r~~~~~pssv~s~~sm~~gvla~A~haa~t~~~F~V~Y~PR~s------~sEF 193 (728)
.+.||.|.+ |+. .+|+.+-.-+ .. -++....+ +--+-+|......|..++|.--|... -.-+
T Consensus 3 i~~gd~V~v~Y~g~~dG~~fdss~-~~--------f~~G~g~v-ipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~~~lv~ 72 (158)
T 3cgm_A 3 VGQDKVVTIRYTLQVEGEVLDQGE-LS--------YLHGHRNL-IPGLEEALEGREEGEAFQAHVPAEKAYGPHDPEGVQ 72 (158)
T ss_dssp CCTTEEEEEEEEEEETTEEEEEEE-EE--------EETTSSSS-CHHHHHHHTTCBTTCEEEEEECGGGTTCCCCGGGEE
T ss_pred CCCCCEEEEEEEEEECCEEEEeeE-EE--------EEECCCCc-ChHHHHHHcCCCCCCEEEEEECcHHHcCCCCcceEE
Confidence 567888877 332 5777655433 00 01111222 22345677777788888877655433 2346
Q ss_pred ccchhhHHHhhhcCCccccCEEeEeecccccccceeeEEEEEeec
Q 004820 194 VIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 194 VVp~~ky~~a~~~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
.||++.+-+. ..|.+||+|.+. +++- +.+.|+|+.|.+
T Consensus 73 ~v~~~~f~~~---~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 110 (158)
T 3cgm_A 73 VVPLSAFPED---AEVVPGAQFYAQ--DMEG--NPMPLTVVAVEG 110 (158)
T ss_dssp EEEGGGSCTT---SCCCTTCEEEEE--ETTT--EEEEEEEEEEET
T ss_pred EEEHHHCCCC---CCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 7888776432 369999999864 4442 567899999975
No 18
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=52.99 E-value=57 Score=30.49 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=64.5
Q ss_pred ccCCcCCCEEEE-EE--cc-CCcEEEEEEecCCCCCCCCCcccc-CcccchhHHHHHHHHhhcCCeEEEEEeCCC-----
Q 004820 119 AKRLVAGDSVLF-IW--NE-KNQLLLGIRRAIRPPTVMPSSVLS-SDSMHIGLLAAAAHAAATNSCFTVFFNPRA----- 188 (728)
Q Consensus 119 ~K~L~aGD~VvF-~R--~~-~g~L~vGiRRa~r~~~~~pssv~s-~~sm~~gvla~A~haa~t~~~F~V~Y~PR~----- 188 (728)
.+..+.||.|.+ |. .. +|+.+=.-+.. .|..+.- ...+ +--+.+|......|..++|.--|-.
T Consensus 4 ~~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~------~p~~f~~G~g~v-ipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~ 76 (151)
T 2kr7_A 4 HDLESIKQAALIEYEVREQGSSIVLDSNISK------EPLEFIIGTNQI-IAGLEKAVLKAQIGEWEEVVIAPEEAYGVY 76 (151)
T ss_dssp CCCTTSCCEEEEEEEEEESSCSCEEEESTTT------CCEEEETTCCCS-CHHHHHHHTTCCBTCEEEEEECGGGTTCSS
T ss_pred ccCCCCCCEEEEEEEEEECCCCCEEEeCCCC------cCEEEEECCCCc-cHHHHHHHcCCCCCCEEEEEEecHHHcCCC
Confidence 455778999887 33 34 77766544211 2322221 2222 2335567777778888887765433
Q ss_pred -CCCccccchhhHHHhhhcCCccccCEEeEeecccccccceeeEEEEEeec
Q 004820 189 -SPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 189 -s~sEFVVp~~ky~~a~~~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
.-.-+.||++.+ . ...+.+||+|.+. +++. +...|+|+.|.+
T Consensus 77 ~~~~v~~v~~~~f-~---~~~~~~G~~~~~~--~~~G--~~~~~~V~~v~~ 119 (151)
T 2kr7_A 77 ESSYLQEVPRDQF-E---GIELEKGMSVFGQ--TEDN--QTIQAIIKDFSA 119 (151)
T ss_dssp CSCEEEEEEGGGG-T---TSCCCTTCEEEEE--ETTT--EEEEEEEEEECS
T ss_pred CcceEEEEcHHHc-C---CCCCccCCEEEEE--CCCC--CEEEEEEEEECC
Confidence 234467888887 2 2369999999854 4442 467899999975
No 19
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=50.24 E-value=48 Score=31.99 Aligned_cols=106 Identities=13% Similarity=0.092 Sum_probs=65.6
Q ss_pred CCcCCCEEEE-EE--ccCCcEEEEEEecCCCCCCCCCccccCcccchhHHHHHHHHhhcCCeEEEEEeCCCCCCc-----
Q 004820 121 RLVAGDSVLF-IW--NEKNQLLLGIRRAIRPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSE----- 192 (728)
Q Consensus 121 ~L~aGD~VvF-~R--~~~g~L~vGiRRa~r~~~~~pssv~s~~sm~~gvla~A~haa~t~~~F~V~Y~PR~s~sE----- 192 (728)
..+.||.|.+ |+ .++|+++=.-+... .|..+.-....-+--+-+|......|..++|..-|.....+
T Consensus 24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~-----~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~~~l 98 (169)
T 4dt4_A 24 SVQSNSAVLVHFTLKLDDGTTAESTRNNG-----KPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDL 98 (169)
T ss_dssp SCCTTCEEEEEEEEEETTSCEEEEHHHHT-----SCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCCGGG
T ss_pred cCCCCCEEEEEEEEEECCCCEEEecCCCC-----CCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCChHH
Confidence 5788999988 44 35788665432211 12222211111223456677777888888888766544333
Q ss_pred -cccchhhHHHhhhcCCccccCEEeEeecccccccceeeEEEEEeec
Q 004820 193 -FVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 193 -FVVp~~ky~~a~~~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
+.||++.+-.. ..+.+||+|.+ ++++. ..+.|+|+.|.+
T Consensus 99 v~~vp~~~f~~~---~~~~~G~~~~~--~~~~G--~~~~~~V~~v~~ 138 (169)
T 4dt4_A 99 IQYFSRREFMDA---GEPEIGAIMLF--TAMDG--SEMPGVIREING 138 (169)
T ss_dssp EEEEEGGGGTTT---CCCCTTCEEEE--ECTTS--CEEEEEEEEEET
T ss_pred EEEeCHHHCCCc---CCCCCCcEEEE--ECCCC--CEEEEEEEEEcC
Confidence 57888776432 25899999876 44442 467899999986
No 20
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=39.96 E-value=1.6e+02 Score=27.91 Aligned_cols=105 Identities=15% Similarity=0.163 Sum_probs=60.9
Q ss_pred CcCCCEEEE-EE--ccCCcEEEEEEec-----C---CCCCCCCCccccCcccchhHHHHHHHHhhcCCeEEEEEeCCCCC
Q 004820 122 LVAGDSVLF-IW--NEKNQLLLGIRRA-----I---RPPTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASP 190 (728)
Q Consensus 122 L~aGD~VvF-~R--~~~g~L~vGiRRa-----~---r~~~~~pssv~s~~sm~~gvla~A~haa~t~~~F~V~Y~PR~s~ 190 (728)
++.||.|.+ |+ . +|+++=.-+.. . ......|..+.-....-+--+.+|......|..++|+--|-...
T Consensus 2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY 80 (157)
T 3pr9_A 2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF 80 (157)
T ss_dssp CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence 457888877 33 3 77766544321 0 00001233322222122334567788888899888886554332
Q ss_pred C------ccccchhhHHHhhhcCCccccCEEeEeecccccccceeeEEEEEeec
Q 004820 191 S------EFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 191 s------EFVVp~~ky~~a~~~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
. =..||++.+-+. .....+||+|.+ +++ .|+|+.|.+
T Consensus 81 G~~~~~~V~~v~~~~f~~~--~~~~~~G~~~~~--~~~-------~~~V~~v~~ 123 (157)
T 3pr9_A 81 GKRDPSKIKLIPLSEFTKR--GIKPIKGLTITI--DGI-------PGKIVSINS 123 (157)
T ss_dssp CCCCGGGEEEEEHHHHHHT--TCCCCTTCEEEE--TTE-------EEEEEEEET
T ss_pred CCCChHhEEEcCHHHCCcc--cCCcCCCcEEEe--cCC-------CeEEEEEcC
Confidence 2 367888887653 234788999975 332 589999975
No 21
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=35.35 E-value=34 Score=28.94 Aligned_cols=41 Identities=12% Similarity=0.207 Sum_probs=32.1
Q ss_pred CceeeccchhhhhhccCCcCCCEEEEEEc-cCCcEEEEEEecC
Q 004820 105 KRHLLTTGWSVFVSAKRLVAGDSVLFIWN-EKNQLLLGIRRAI 146 (728)
Q Consensus 105 rrhlLTtGWs~FV~~K~L~aGD~VvF~R~-~~g~L~vGiRRa~ 146 (728)
..|.|+== ..++++-+|+.||.+...=+ .+|++.++.+|-.
T Consensus 23 etyYInIP-aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVK 64 (68)
T 3o27_A 23 TTFYLLIP-KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVK 64 (68)
T ss_dssp CCEEEEEC-HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECG
T ss_pred eEEEEeCc-HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhh
Confidence 34555421 48999999999999998775 5889999999854
No 22
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=34.68 E-value=12 Score=29.51 Aligned_cols=14 Identities=7% Similarity=0.083 Sum_probs=11.8
Q ss_pred cEEEEEcCCCCeEe
Q 004820 656 WQLVFVDRENDVLL 669 (728)
Q Consensus 656 ~~lvY~D~EgD~mL 669 (728)
=.|+|+|.+|||-.
T Consensus 19 c~V~YtD~dG~WGV 32 (46)
T 1e8p_A 19 TKVEYTDASGQWGV 32 (46)
T ss_dssp SCEEEEETTEEEEE
T ss_pred ceEEEEcCCCcccc
Confidence 36999999999954
No 23
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.32 E-value=41 Score=26.06 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.3
Q ss_pred CccccCEEeEeecccccccceeeEEEEEeec
Q 004820 208 RVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 208 ~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
.|.+|+..--.|..|. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg---~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN---KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT---EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEEeC
Confidence 3899999999995444 799999999964
No 24
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=31.79 E-value=44 Score=30.41 Aligned_cols=67 Identities=28% Similarity=0.300 Sum_probs=41.1
Q ss_pred hhHHHhhhcCCccccCEEeEeecccccccceeeEEEEEeecCCCCCCCCCCccccccccCCCCCCCCCCCcccccceeCC
Q 004820 198 TKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 277 (728)
Q Consensus 198 ~ky~~a~~~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d~dp~rWp~S~WR~LkV~WDe~~~~~~~~RVSPWeIEpv~ 277 (728)
+.|..-+.. +..+|||+||.=.-||-+. -=.|++. ++. +- -+ .+||.|..... .--|+-=.||.+.
T Consensus 12 ~~Ya~YVr~-~l~pGM~VR~~~dyeev~~-GD~G~vl-~s~-~G-----l~--~vQv~W~~~G~---TyWV~~~~~Ellg 77 (105)
T 2jng_A 12 NTYALYVRD-TLQPGMRVRMLDDYEEISA-GDEGEFR-QSN-NG-----VP--PVQVFWESTGR---TYWVHWHMLEILG 77 (105)
T ss_dssp HHHHHHHHH-HCCTTCEEEECSCBTTBCT-TCEEEEE-EEC-TT-----SS--EEEEEETTTTE---EEEEEGGGEEECC
T ss_pred hhHHHHHHh-cCCCccEEeeehhhhhhcc-CCceeEE-ecC-CC-----Cc--cceeeehhcCc---eEEEEeehhhhcC
Confidence 566666654 5999999999743344222 2378888 442 22 22 78999986652 3445555666664
Q ss_pred C
Q 004820 278 T 278 (728)
Q Consensus 278 ~ 278 (728)
.
T Consensus 78 ~ 78 (105)
T 2jng_A 78 F 78 (105)
T ss_dssp C
T ss_pred C
Confidence 3
No 25
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.65 E-value=29 Score=33.62 Aligned_cols=51 Identities=22% Similarity=0.223 Sum_probs=32.3
Q ss_pred eecCCCeEEeEE--EEeCCCCceeeccchhhhhhccCCcCCCEEEEEEccCCcEEEEE
Q 004820 87 RDLHDVEWKFRH--IFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGI 142 (728)
Q Consensus 87 ~D~~G~~W~FR~--iyr~~~rrhlLTtGWs~FV~~K~L~aGD~VvF~R~~~g~L~vGi 142 (728)
.|+.+.-|-|.- +..+- +.+...- -..-..|.+||.|-|+++.+|+|++.|
T Consensus 86 ~~L~~~~Wv~~~~~v~~ng--~~~~e~~---~~~l~~l~~Gd~ig~~~~~~G~l~~~i 138 (170)
T 2e63_A 86 TGLKGGSWVVSGCSVLRDG--RSVLEEY---GQDLDQLGEGDRVGVERTVAGELRLWV 138 (170)
T ss_dssp GGCCSSEEEESSSEEEESS--CEEEESC---SSCGGGCCSSCCEEEEECTTSCEEEEE
T ss_pred hhCCCCeEEEeccccccCC--cccchhc---cccccccCCCCEEEEEEcCCcEEEEEE
Confidence 366777888742 22211 1122210 013456789999999999999999987
No 26
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=30.08 E-value=52 Score=26.58 Aligned_cols=29 Identities=17% Similarity=0.308 Sum_probs=24.4
Q ss_pred CCccccCEEeEeecccccccceeeEEEEEeec
Q 004820 207 TRVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 207 ~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
..|.+|+.+.-.|..+. .||.++|.+|..
T Consensus 7 ~~~~vGd~c~A~~s~Dg---~wYrA~I~~v~~ 35 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDG---QCYEAEIEEIDE 35 (64)
T ss_dssp SCCCTTCEEEEECTTTS---SEEEEEEEEEET
T ss_pred CCCCCCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 36999999999995443 799999999984
No 27
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=29.97 E-value=54 Score=25.96 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.5
Q ss_pred CccccCEEeEeecccccccceeeEEEEEeec
Q 004820 208 RVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 208 ~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
.|.+|+.+-..|..+. .||.++|+++..
T Consensus 3 ~~~~G~~c~A~~s~Dg---~wYrA~I~~i~~ 30 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDG---CIYPATIASIDF 30 (59)
T ss_dssp CCCTTCEEEEECTTTS---CEEEEEEEEEET
T ss_pred cCCcCCEEEEEECCCC---CEEEEEEEEEcC
Confidence 5999999999995443 799999999964
No 28
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=27.65 E-value=69 Score=26.84 Aligned_cols=53 Identities=9% Similarity=0.202 Sum_probs=39.2
Q ss_pred CCccccCEEeEeecccccccceeeEEEEEeecCCCCCCCCCCccccccccCCCCCCCCCCCcccccceeCC
Q 004820 207 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT 277 (728)
Q Consensus 207 ~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d~dp~rWp~S~WR~LkV~WDe~~~~~~~~RVSPWeIEpv~ 277 (728)
..|.+|+++--++ ++- ++|-+||++|... ....|..++.. .+.|..=+|.|+.
T Consensus 5 ~~~~vGd~vmArW-~D~---~yYpA~I~si~~~----------~~Y~V~F~dG~----~etvk~~~ikp~~ 57 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDC---RFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFS 57 (67)
T ss_dssp CCCCTTCEEEEEC-TTS---CEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC
T ss_pred cccccCCEEEEEc-CCC---CEeeEEEEEECCC----------CeEEEEEeCCc----eEEEeHHHcccCC
Confidence 4699999999999 333 7899999999852 35889999832 3556665655554
No 29
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=25.90 E-value=57 Score=30.73 Aligned_cols=47 Identities=17% Similarity=0.195 Sum_probs=33.6
Q ss_pred CcEEEEeecCCCeEEeEEE---------EeCCCCceee--ccchhhhhhccCCcCCCEEEE
Q 004820 81 AQELIARDLHDVEWKFRHI---------FRGQPKRHLL--TTGWSVFVSAKRLVAGDSVLF 130 (728)
Q Consensus 81 ~q~L~~~D~~G~~W~FR~i---------yr~~~rrhlL--TtGWs~FV~~K~L~aGD~VvF 130 (728)
..++.+.|.+|++=....- ....+-+|+| ..||. .+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~~---~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGLA---ARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTHH---HHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcChH---HHcCCCCCCEEeC
Confidence 4678888888876665431 1112357999 57877 8999999999875
No 30
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=25.49 E-value=1.1e+02 Score=26.85 Aligned_cols=45 Identities=18% Similarity=0.037 Sum_probs=34.2
Q ss_pred cEEEEeecCCCeEEeEEEEeCCCCceeeccchhhhhhccCCcCCCEEEEEEc----cCCcEEEEEEecC
Q 004820 82 QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWN----EKNQLLLGIRRAI 146 (728)
Q Consensus 82 q~L~~~D~~G~~W~FR~iyr~~~rrhlLTtGWs~FV~~K~L~aGD~VvF~R~----~~g~L~vGiRRa~ 146 (728)
..+.+.|..| +.+++.|+.. |.+||.|.+... =+|++.+-+-|..
T Consensus 40 ~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~ 88 (106)
T 2k75_A 40 YQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSS 88 (106)
T ss_dssp EEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTS
T ss_pred EEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcE
Confidence 4699999999 6888888643 889999998743 2787777776654
No 31
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.98 E-value=65 Score=27.26 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=30.5
Q ss_pred CCccccCEEeEeecccccccceeeEEEEEeecCCCCCCCCCCccccccccCCC
Q 004820 207 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDES 259 (728)
Q Consensus 207 ~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d~dp~rWp~S~WR~LkV~WDe~ 259 (728)
..|.+|+++.-.|. |. .||.+||+.|.+ + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg---~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC---RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS---SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC---CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 36999999999996 33 799999999964 1 2467888754
No 32
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=23.19 E-value=77 Score=27.63 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=23.9
Q ss_pred CccccCEEeEeecccccccceeeEEEEEeec
Q 004820 208 RVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 208 ~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
.|.+|+.+.-.|..+. .||.++|.+|..
T Consensus 10 ~~kvGd~C~A~ys~Dg---~wYrA~I~~i~~ 37 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDG---CIYPATIASIDF 37 (88)
T ss_dssp CCCSSCEEEEECTTTC---CEEEEEEEEEET
T ss_pred CCCCCCEEEEEECCCC---CEEEEEEEEecC
Confidence 6999999999995443 799999999974
No 33
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo domain, mRNA turnover, RRN processing, RNA binding, DNA binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Probab=22.63 E-value=87 Score=38.72 Aligned_cols=48 Identities=19% Similarity=0.333 Sum_probs=34.3
Q ss_pred cCCccccCEEeEeecccccccceeeEEEEEeecCCCCCCCCCCccccccccCCCCC
Q 004820 206 HTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTA 261 (728)
Q Consensus 206 ~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d~dp~rWp~S~WR~LkV~WDe~~~ 261 (728)
+..+..|+||-|.=+.-..+. -..|||+||.... .=.+|+|-||++=.
T Consensus 1063 ~Q~F~LGDRVv~VqdsG~VPl-~~kGTVVGi~~~~-------~~~~ldVvFD~~F~ 1110 (1155)
T 3pie_A 1063 SQRFHLGDRVMYIQDSGKVPL-HSKGTVVGYTSIG-------KNVSIQVLFDNEII 1110 (1155)
T ss_pred CCcccCCCeEEEecCCCCCcc-ccceEEEEEecCC-------CceEEEEEeccCcc
Confidence 445999999999765443332 2489999998632 24689999998753
No 34
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=21.68 E-value=38 Score=29.65 Aligned_cols=19 Identities=42% Similarity=0.695 Sum_probs=15.8
Q ss_pred hhhccCCcCCCEEEEEEcc
Q 004820 116 FVSAKRLVAGDSVLFIWNE 134 (728)
Q Consensus 116 FV~~K~L~aGD~VvF~R~~ 134 (728)
....|+..+||+|+|--..
T Consensus 18 Wa~~~~f~vGD~L~F~y~~ 36 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNP 36 (96)
T ss_dssp TTTTCCBCTTCEEEEECCT
T ss_pred hccCceEcCCCEEEEEecC
Confidence 3588999999999997654
No 35
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=21.35 E-value=97 Score=27.17 Aligned_cols=54 Identities=9% Similarity=0.199 Sum_probs=39.5
Q ss_pred CCccccCEEeEeecccccccceeeEEEEEeecCCCCCCCCCCccccccccCCCCCCCCCCCcccccceeCCC
Q 004820 207 TRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTT 278 (728)
Q Consensus 207 ~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d~dp~rWp~S~WR~LkV~WDe~~~~~~~~RVSPWeIEpv~~ 278 (728)
..|.+|+++--.+ ++- ++|-+||++|... ....|.+++.. .+.|.+=+|.|+..
T Consensus 20 ~~f~vGd~VlArW-~D~---~yYPAkI~sV~~~----------~~YtV~F~DG~----~etvk~~~IKp~~~ 73 (85)
T 3qii_A 20 SEFQINEQVLACW-SDC---RFYPAKVTAVNKD----------GTYTVKFYDGV----VQTVKHIHVKAFSK 73 (85)
T ss_dssp -CCCTTCEEEEEC-TTS---CEEEEEEEEECTT----------SEEEEEETTSC----EEEEEGGGEEECC-
T ss_pred cccccCCEEEEEe-CCC---CEeeEEEEEECCC----------CeEEEEEeCCC----eEEecHHHcccCCh
Confidence 3699999999999 443 7999999999852 35899999833 35566666666543
No 36
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=20.94 E-value=2.2e+02 Score=26.46 Aligned_cols=106 Identities=19% Similarity=0.098 Sum_probs=59.6
Q ss_pred CcCCCEEEE-EE--ccCCcEEEEEEe-----cC--CC-CCCCCCccccCcccchhHHHHHHHHhhcCCeEEEEEeC----
Q 004820 122 LVAGDSVLF-IW--NEKNQLLLGIRR-----AI--RP-PTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNP---- 186 (728)
Q Consensus 122 L~aGD~VvF-~R--~~~g~L~vGiRR-----a~--r~-~~~~pssv~s~~sm~~gvla~A~haa~t~~~F~V~Y~P---- 186 (728)
.+.||.|.+ |. .++|+.+-.-+. +. .+ ....|..+.-....-+--+.+|......|..++|.--|
T Consensus 2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY 81 (151)
T 1ix5_A 2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY 81 (151)
T ss_dssp CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence 457888877 33 347776554431 00 00 00123332222111223355677777778777776544
Q ss_pred --CCCCCccccchhhHHHhhhcCCccccCEEeEeecccccccceeeEEEEEeec
Q 004820 187 --RASPSEFVIPLTKYVKAVFHTRVSVGMRFRMLFETEESSVRRYMGTITGISD 238 (728)
Q Consensus 187 --R~s~sEFVVp~~ky~~a~~~~~ws~GmRFrM~fe~Eds~~~r~~GTI~gi~d 238 (728)
+....-|.||+..+... ...+.+||+|. +++ ..|+|+.|.+
T Consensus 82 G~~~~~~v~~v~~~~f~~~--~~~~~~G~~~~--~~~-------~~~~V~~v~~ 124 (151)
T 1ix5_A 82 GNRNEMLIQKIPRDAFKEA--DFEPEEGMVIL--AEG-------IPATITEVTD 124 (151)
T ss_dssp CSCCSTTBCCEETHHHHTS--TTCCCTTEEEE--SSS-------CEEEEEEEET
T ss_pred CCCCccEEEEEEHHHcCcc--CCcccccCEEE--ECC-------eEEEEEEEcC
Confidence 43345688999887531 13589999876 333 5899999975
No 37
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=20.08 E-value=61 Score=31.22 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=18.7
Q ss_pred cCCCEEEEEEccCCcEEEEE
Q 004820 123 VAGDSVLFIWNEKNQLLLGI 142 (728)
Q Consensus 123 ~aGD~VvF~R~~~g~L~vGi 142 (728)
..||.+.|+++.+|+|++.|
T Consensus 107 ~~g~~l~f~v~~~G~l~~~i 126 (168)
T 2yue_A 107 EKDNILYYYVNGAGDVIYGI 126 (168)
T ss_dssp CSSCEEEEEECTTSEEEEEE
T ss_pred cCCCEEEEEEcCCCEEEEEE
Confidence 67999999999999999988
Done!