BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004821
(728 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 154/574 (26%), Positives = 248/574 (43%), Gaps = 51/574 (8%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 EKAS----PEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSAGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
+ G R L DHE + +K M+ GD +R GY + GR DD +N+ G +
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHR 526
Query: 622 TSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKA 681
+ EIE A I E A + + A G + + V L G +P +L
Sbjct: 527 LGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELYAEVRNW 582
Query: 682 IQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 715
+++ + PL ++ P+T S K++RR+L+
Sbjct: 583 VRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 164 bits (415), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 157/577 (27%), Positives = 251/577 (43%), Gaps = 57/577 (9%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
+ G R L DH E+ YFS +K M+ GD +R GY + GR DD +N+
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS---TFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVS 523
Query: 619 GIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIF 678
G + + EIE A I E A + + A G + + V L G +P +L
Sbjct: 524 GHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELYAEV 579
Query: 679 SKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 715
+++ + PL ++ P+T S K++RR+L+
Sbjct: 580 RNWVEKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 154/574 (26%), Positives = 248/574 (43%), Gaps = 51/574 (8%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
+ G R L DHE + +K M+ GD +R GY + GR DD +N+ G +
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHR 526
Query: 622 TSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKA 681
+ EIE A I E A + + A G + + V L G +P +L
Sbjct: 527 LGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELYAEVRNW 582
Query: 682 IQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 715
+++ + PL ++ P+T S K++RR+L+
Sbjct: 583 VRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 163 bits (412), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 157/577 (27%), Positives = 250/577 (43%), Gaps = 57/577 (9%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
+ G R L DH E+ YFS +K M+ GD +R GY + GR DD +N+
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS---TFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVS 523
Query: 619 GIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIF 678
G + + EIE A I E A + + A G + + V L G +P +L
Sbjct: 524 GHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELYAEV 579
Query: 679 SKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 715
+ + + PL ++ P+T S K++RR+L+
Sbjct: 580 RNWVAKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 153/574 (26%), Positives = 247/574 (43%), Gaps = 51/574 (8%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
+ G R L DHE + +K M+ GD +R GY + GR DD +N+ G +
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHR 526
Query: 622 TSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKA 681
+ EIE A I E A + + A G + + V L G +P +L
Sbjct: 527 LGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELYAEVRNW 582
Query: 682 IQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 715
+++ + PL ++ P+T S ++RR+L+
Sbjct: 583 VRKEIGPLATPDVLHWTDSLPKTRSGAIMRRILR 616
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 156/577 (27%), Positives = 250/577 (43%), Gaps = 57/577 (9%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A R+ S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R G PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGASIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADH---EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLG 618
+ G R L DH E+ YFS +K M+ GD +R GY + GR DD +N+
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFS---TFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVS 523
Query: 619 GIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIF 678
G + + EIE A I E A + + A G + + V L G +P +L
Sbjct: 524 GHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELYAEV 579
Query: 679 SKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 715
+++ + PL ++ P+T S K++RR+L+
Sbjct: 580 RNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 160 bits (406), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 153/574 (26%), Positives = 247/574 (43%), Gaps = 51/574 (8%)
Query: 167 WLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANAL 226
W LN+A CL L++ D A++W D D S ++Y+EL V AN L
Sbjct: 69 WYEDGTLNLAANCL--DRHLQENGDRTAIIWEGD--DTSQSKHISYRELHRDVCRFANTL 124
Query: 227 -DTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIF 285
D KGD +AI MPM A + LA G V I F+ +A + S ++ +
Sbjct: 125 LDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVI 184
Query: 286 TQDFILRGGRKFPLYSKVAEAGPLK---------AVVLPVIGDDVGIQLRQQDVSWKDFL 336
T D +R GR PL V +A LK +VL G D+ Q +D+ W+D +
Sbjct: 185 TADEGVRAGRSIPLKKNVDDA--LKNPNVTSVEHVIVLKRTGSDIDWQ-EGRDLWWRDLI 241
Query: 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHI-DMK 395
P++ P D + IL++SG+TG+PK + T + AA + ++ D
Sbjct: 242 E----KASPEHQPEAMNAEDPLF-ILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYH 296
Query: 396 VGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGT 451
GD+Y ++GWV G +L+ GA ++ G P + V V++L T
Sbjct: 297 PGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYT 356
Query: 452 VPSLVKAW--KNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIECCGGT 507
P+ ++A + ++G D + +R S GE N + W K + P+++ T
Sbjct: 357 APTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT 416
Query: 508 ELASSYIQGSMLQPQAFG-AFSTATMTTGF-----VILDELGVPYPDDQPCVGEVGLFPL 561
E G M+ P + T F ++D G +P + G + +
Sbjct: 417 ETG-----GFMITPLPGAIELKAGSATRPFFGVQPALVDNEG--HPQEGATEGNLVITDS 469
Query: 562 YLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
+ G R L DHE + +K M+ GD +R GY + GR DD +N+ G +
Sbjct: 470 WPGQA-RTLFGDHERFEQTYFSTFKNMYFS--GDGARRDEDGYYWITGRVDDVLNVSGHR 526
Query: 622 TSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKA 681
+ EIE A I E A + + A G + + V L G +P +L
Sbjct: 527 LGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYVTLNHG--EEPSPELYAEVRNW 582
Query: 682 IQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLK 715
+++ + PL ++ P+T S K++RR+L+
Sbjct: 583 VRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILR 616
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 136/592 (22%), Positives = 243/592 (41%), Gaps = 53/592 (8%)
Query: 161 SKHGGTWLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVM 220
S W LN C+ K + A+++ D +TYKEL E V
Sbjct: 69 SFQNNAWFLNGQLNACYNCV--DRHALKTPNKKAIIFEGDEPGQGY--SITYKELLEEVC 124
Query: 221 LVANALDTMFS--KGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278
VA L KGD +A+ MPM A+I LAI G + + F++ + R+
Sbjct: 125 QVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRIND 184
Query: 279 SKAKGIFTQDFILRGGR----KFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ-QDVSWK 333
+K + T D RGG+ K + + E ++ V++ ++ + +D+ W
Sbjct: 185 GDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDW- 243
Query: 334 DFLSCVDYHPGPKYYPPVYRPVDSV--INILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH 391
+ YYP PVDS + +L++SG+TG PK + + + A +
Sbjct: 244 ----ATEKKKYKTYYPCT--PVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRY 297
Query: 392 -IDMKVGDVYCWPTNLGWVMG-PIILFSSFLSGAALALYHGSPLERSFGKF---VQDSGV 446
D DV+ ++GW+ G +++ L G A ++ G+P ++ ++ + + V
Sbjct: 298 TFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKV 357
Query: 447 SVLGTVPSLVKAWKNT--NCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK--PIIE 502
+ P+ ++ K + ++ +R S GE + W + K PI++
Sbjct: 358 TQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVD 417
Query: 503 CCGGTELASSYIQ--GSMLQPQAFGAFSTATMTTGFVILD-----ELGVPYPDDQPCVGE 555
TE S + + P G+ S V+LD EL + + V
Sbjct: 418 TYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKA 477
Query: 556 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 615
+P + R + +H+ + + Y G + GD + GYI + GR DD +
Sbjct: 478 A--WPSFA----RTIWKNHDRYLDTYLNPYPGYYFT--GDGAAKDKDGYIWILGRVDDVV 529
Query: 616 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVD--- 672
N+ G + S+ EIE D + E A + + G V V+ K S D
Sbjct: 530 NVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWSTATDDEL 588
Query: 673 ---KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 721
K ++F+ +++++ P L+ +V + P+T S K++RR+L+ L E
Sbjct: 589 QDIKKHLVFT--VRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 123/519 (23%), Positives = 198/519 (38%), Gaps = 61/519 (11%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
RMTY ++ A+ L + +KGD +A+ MP +V ++ G V V I
Sbjct: 43 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRL 102
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV-AEAGPLKAVVLPVIGDDVGIQLR 326
AA E++ L S +K ++ G P+ + A+A P V + D + +LR
Sbjct: 103 AAPEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLR 156
Query: 327 QQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA 386
P V D + I+++SGTTG PK + T S + AA
Sbjct: 157 SAAAD----------------EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAA 199
Query: 387 EAWGH-IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSG 445
+W ID++ D P + V + S + G L + + V++
Sbjct: 200 SSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER- 258
Query: 446 VSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 505
V + G VP+++ + LD R F + G + + + L K Y IE
Sbjct: 259 VCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG--APMPEALI---KIYAAKNIEVVQ 313
Query: 506 GTELASSYIQGSMLQPQ----AFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPL 561
G L S G++L + G+ ATM T + + GV + GEV +
Sbjct: 314 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE---GEVVI--- 367
Query: 562 YLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIK 621
+D LL + G R GDI + GY+ ++ R D + GG
Sbjct: 368 ---KSDILLKEYWNRPEATRDAFDNGWF--RTGDIGEIDDEGYLYIKDRLKDMIISGGEN 422
Query: 622 TSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKA 681
EIE V G + E A I + G I V + + Q +
Sbjct: 423 VYPAEIESVIIGV-PGVSEVAVIGLPDEKWGEIAAAIVVADQNEVSEQQI---------- 471
Query: 682 IQRNLNPLFKVSLVKIVL---EFPRTASNKLLRRVLKDQ 717
++ L + L K V+ PR + K+L+ VL++Q
Sbjct: 472 VEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQ 510
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 112/543 (20%), Positives = 201/543 (37%), Gaps = 94/543 (17%)
Query: 211 TYKELRERVMLVANALDTM--FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFA 268
++EL E AN L +GD +A+ +P ++ L I AG + +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQ 328
+ +I RL++SKAK I D +++ + + +E L+ +L + +
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQ-----EVDTVASECPSLRIKLL--------VSEKSC 181
Query: 329 DVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA 388
D W +F ++ + V I F+SGT+G PK + S A
Sbjct: 182 D-GWLNFKKLLN--EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 389 WGHIDMKVGDVYCWPTNLGWVMG------------------------PIILFSSFLSGAA 424
G ++ D+ ++ GW++ P+++ + LS
Sbjct: 239 AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP 297
Query: 425 LALYHGSPL--------ERSFGKFVQDSGVSVLGT--VPSLVKAWKNTNCLQGLDWTKIR 474
+ G+P+ + S KF +G +P ++ W+ GLD +
Sbjct: 298 IKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDIRESY 354
Query: 475 SFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTT 534
TG T V + + K Y C ++ +G++L P G
Sbjct: 355 GQTETGLTCMVSKTMKI--KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG--------- 401
Query: 535 GFVILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHG 594
++G+ +P +G+F Y+ D+ + + G
Sbjct: 402 ------DIGIRVKPIRP----IGIFSGYVDNPDKTAANIRGDFWL-------------LG 438
Query: 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPE 654
D + GY GRADD +N G + E+E +++ETA IS SP E
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENAL-MEHPAVVETAVIS-SPDPVRGE 496
Query: 655 VLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVL 714
V+ VVL F S ++L + ++ P ++ VL P+T + K+ R L
Sbjct: 497 VVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKL 556
Query: 715 KDQ 717
+D+
Sbjct: 557 RDK 559
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 112/543 (20%), Positives = 201/543 (37%), Gaps = 94/543 (17%)
Query: 211 TYKELRERVMLVANALDTM--FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFA 268
++EL E AN L +GD +A+ +P ++ L I AG + +
Sbjct: 75 NFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMK 134
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQ 328
+ +I RL++SKAK I D +++ + + +E L+ +L + +
Sbjct: 135 STDILYRLQMSKAKAIVAGDEVIQ-----EVDTVASECPSLRIKLL--------VSEKSC 181
Query: 329 DVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA 388
D W +F ++ + V I F+SGT+G PK + S A
Sbjct: 182 D-GWLNFKKLLN--EASTTHHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMD 238
Query: 389 WGHIDMKVGDVYCWPTNLGWVMG------------------------PIILFSSFLSGAA 424
G ++ D+ ++ GW++ P+++ + LS
Sbjct: 239 AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKT-LSSYP 297
Query: 425 LALYHGSPL--------ERSFGKFVQDSGVSVLGT--VPSLVKAWKNTNCLQGLDWTKIR 474
+ G+P+ + S KF +G +P ++ W+ GLD +
Sbjct: 298 IKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQT---GLDIRESY 354
Query: 475 SFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTT 534
TG T V + + K Y C ++ +G++L P G
Sbjct: 355 GQTETGLTCMVSKTMKI--KPGYMGTAASCYDVQIIDD--KGNVLPPGTEG--------- 401
Query: 535 GFVILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHG 594
++G+ +P +G+F Y+ D+ + + G
Sbjct: 402 ------DIGIRVKPIRP----IGIFSGYVDNPDKTAANIRGDFWL-------------LG 438
Query: 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPE 654
D + GY GRADD +N G + E+E +++ETA IS SP E
Sbjct: 439 DRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVENAL-MEHPAVVETAVIS-SPDPVRGE 496
Query: 655 VLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVL 714
V+ VVL F S ++L + ++ P ++ VL P+T + K+ R L
Sbjct: 497 VVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKL 556
Query: 715 KDQ 717
+D+
Sbjct: 557 RDK 559
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/343 (24%), Positives = 135/343 (39%), Gaps = 36/343 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
RMTY ++ A+ L + +KGD +A+ MP +V ++ G V V I
Sbjct: 29 RMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPINTRL 88
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKV-AEAGPLKAVVLPVIGDDVGIQLR 326
AA E++ L S +K ++ G P+ + A+A P V + D + +LR
Sbjct: 89 AAPEVSFILSDSGSK------VVIYGAPSAPVIDAIRAQADPPGTVTDWIGADSLAERLR 142
Query: 327 QQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA 386
P V D + I+++SGTTG PK + T S + AA
Sbjct: 143 SAAAD----------------EPAVECGGDDNLFIMYTSGTTGHPKGVVHTHES-VHSAA 185
Query: 387 EAWGH-IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSG 445
+W ID++ D P + V + S + G L + + V++
Sbjct: 186 SSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEER- 244
Query: 446 VSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 505
V + G VP+++ + LD R F + G + + + L K Y IE
Sbjct: 245 VCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGG--APMPEALI---KIYAAKNIEVVQ 299
Query: 506 GTELASSYIQGSMLQPQ----AFGAFSTATMTTGFVILDELGV 544
G L S G++L + G+ ATM T + + GV
Sbjct: 300 GYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGV 342
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 121/557 (21%), Positives = 210/557 (37%), Gaps = 73/557 (13%)
Query: 187 RKEDDSVAVVWREDRCDDSSVNRM-TYKELRERVMLVANA-LDTMFSKGDAIAIDMPMTV 244
R + +A++W CDD ++ T+K+L+ AN + KGD + + +
Sbjct: 67 RDSPEKLAMIW----CDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRY 122
Query: 245 HAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVA 304
L + G + V R+I R+ + K I I + A
Sbjct: 123 DFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVC---IAEDDVPEQVDEAHA 179
Query: 305 EAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPP---VYRPVDSVINI 361
E G + V GD + W DF ++ P + P V + + +
Sbjct: 180 ECGDIPLKKAKVGGDVLE--------GWIDFRKELE-ESSPIFERPTGEVSTKNEDICLV 230
Query: 362 LFSSGTTGEPKAIPWTQLSPIR--CAAEAWGHIDMKVGDVYCWPTNLGW---VMGPIILF 416
FSSGT G PK + P+ A+ W +++ ++ + GW V G L+
Sbjct: 231 YFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDD--GLHYTVADSGWGKCVWGK--LY 286
Query: 417 SSFLSGAALALYHGSPLE-RSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRS 475
+++G A+ +Y E ++ + GV+ P++ + + L +++ ++
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKY 345
Query: 476 FASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTG 535
GE N + K ++E G TE + ++P+ G+ T
Sbjct: 346 AVVAGEPLNPEVFNRFLEFTGIK-LMEGFGQTETVVTIATFPWMEPKP-GSIGKPTPGYK 403
Query: 536 FVILDELGVPYPDDQPC-VGE-------------VGLFPLYLGATDRLLNADHEEVYFSG 581
++D D + C VGE VGLF Y +R H+ Y +G
Sbjct: 404 IELMDR------DGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTG 457
Query: 582 MPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILET 641
D+ GY+ GRADD + G K E+E ++LE
Sbjct: 458 -------------DMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHPAVLEC 503
Query: 642 AAISV-SPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLE 700
A V P G +V+ +VL K +T P D LK ++ P +++ V E
Sbjct: 504 AITGVPDPVRG--QVIKATIVLTKDYT--PSDSLKNELQDHVKNVTAPYKYPRIIEFVPE 559
Query: 701 FPRTASNKLLRRVLKDQ 717
P+T S K+ R ++D+
Sbjct: 560 LPKTISGKIRRVEIRDK 576
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 96/444 (21%), Positives = 162/444 (36%), Gaps = 63/444 (14%)
Query: 209 RMTYKEL-RERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+++Y EL R L + KGD + +P I++ A++ AG VV++ S
Sbjct: 55 QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSH 114
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ 327
E+ ++ + K +L G R+ ++S L V L ++ + L
Sbjct: 115 RQYELNAFIKQIQPK-------LLIGSRQHEVFSNNQFIDSLHDVNL---SPEIILMLNH 164
Query: 328 Q--DVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLS---PI 382
Q D D++ P + P D V S G+TG PK IP T +
Sbjct: 165 QATDFGLLDWIET----PAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSV 220
Query: 383 RCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQ 442
R +AE G ++ + P +++ +G + + +P + +Q
Sbjct: 221 RASAEICG-LNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVVMA-PNPEPLNCFSIIQ 278
Query: 443 DSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIE 502
V++ VPS V W Q D + G S + S A P +
Sbjct: 279 RHQVNMASLVPSAVIMWLE-KAAQYKDQIQSLKLLQVGGAS------FPESLARQVPEVL 331
Query: 503 CCGGTE---LASSYIQGSMLQPQAFGAFSTA----TMTTGFVILDELGVPYPDDQPCVGE 555
C + +A + + L F+T + I+DE P+ GE
Sbjct: 332 NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPE-----GE 386
Query: 556 VGLFP---------LYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYII 606
+G+ Y D + Y+S GD+++RT G +
Sbjct: 387 IGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYS-------------GDLVQRTPDGNLR 433
Query: 607 VQGRADDTMNLGGIKTSSVEIERV 630
V GR D +N GG K +S EIE++
Sbjct: 434 VVGRIKDQINRGGEKIASEEIEKL 457
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 94/373 (25%), Positives = 151/373 (40%), Gaps = 37/373 (9%)
Query: 356 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH--IDMKVGDVYCWPTNL--GWVMG 411
D + L+SSG+TG+PK T + + AE + + + DV L + +G
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHAN-LYWTAELYAKPILGIAENDVVFSAAKLFFAYGLG 241
Query: 412 PIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWT 471
+ F + A+ + + F + V+ G VP+L + L
Sbjct: 242 NGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYG-VPTLYANMLVSPNLPARADV 300
Query: 472 KIRSFASTGETSNVDDDLWLASKAYYK-PIIECCGGTELASSYIQGSMLQPQAFGAFSTA 530
IR S GE + ++ A++ I++ G TE+ ++ + A +T
Sbjct: 301 AIRICTSAGEA--LPREIGERFTAHFGCEILDGIGSTEMLHIFLSN---RAGAVEYGTTG 355
Query: 531 TMTTGFVI--LDELGVPYPDDQPCVGEVGLFPLYL-GATDRLL---NADHEEVYFSGMPI 584
G+ I DE G PD GEVG LY+ G + ++ N + F G I
Sbjct: 356 RPVPGYEIELRDEAGHAVPD-----GEVG--DLYIKGPSAAVMYWNNREKSRATFLGEWI 408
Query: 585 YKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAI 644
R GD R G + GR+DD + + G S VE+E V D ++LE A +
Sbjct: 409 -------RSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHD-AVLEAAVV 460
Query: 645 SVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRT 704
V GG VVLK+ F P + L ++ L P + V + P+T
Sbjct: 461 GVD--HGGLVKTRAFVVLKREFA--PSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKT 516
Query: 705 ASNKLLRRVLKDQ 717
A+ K+ R L++Q
Sbjct: 517 ATGKIQRFKLREQ 529
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER-------VCDGA-----DESIL 639
R GDI++ T GYI+V+GRA D +N GG K ++ E+E V D A D+ +
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAXVSXPDQFLG 469
Query: 640 ETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVL 699
E + + + P P+ + L+ +R L V+ V
Sbjct: 470 ERSCVFIIPRDEAPKAAELKAFLR-------------------ERGLAAYKIPDRVEFVE 510
Query: 700 EFPRTASNKLLRRVLKDQLKHEL 722
FP+T K+ ++ L++ + +L
Sbjct: 511 SFPQTGVGKVSKKALREAISEKL 533
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 95/403 (23%), Positives = 151/403 (37%), Gaps = 95/403 (23%)
Query: 356 DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGP 412
+ V ++F+SG+TG PK + +SP R + + +V+ + + W
Sbjct: 214 EDVACVMFTSGSTGRPKGV----MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFG 269
Query: 413 IILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVL-------------------- 449
+ LF + L GA L G PLE G+ V GV++L
Sbjct: 270 LELFGALLFGARCVLQSGQNPDPLE--IGELVARHGVTMLQLSASLFNFLVDEVPEAFEG 327
Query: 450 ----------GTVPSLVKAWKNTNCLQ-GLDWTKIRSFASTGETSNVDDDLWLASKAYYK 498
+VP + KA ++ L+ G + S T + V DL
Sbjct: 328 VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGDL----SGTAL 383
Query: 499 PIIECCGGTELAS--SYIQGSMLQPQAFGAF-----STATMTTGFVILDELGVPYPDDQP 551
PI G LA +Y+ L+P A GA + A + G+V +P
Sbjct: 384 PI-----GVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYV-----------SRP 427
Query: 552 CVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA 611
+ T AD F+G G + R GD+ +R G + GRA
Sbjct: 428 AL------------TAERFVADP----FAGP---GGERMYRTGDLARRRADGVLEYVGRA 468
Query: 612 DDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPV 671
DD + + G + E+E G + AA+ + G + LV VV ++
Sbjct: 469 DDQVKIRGFRVEPGEVEARLVG--HPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPPDA 526
Query: 672 DKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVL 714
+L+ ++A+ + P+ V V E PRT + KL RR L
Sbjct: 527 AELRRHVAEALPAYMVPVECVP----VDELPRTPNGKLDRRAL 565
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 31/143 (21%)
Query: 592 RHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIER-------VCDGA-----DESIL 639
R GDI++ T GYI+V+GRA D +N GG K ++ E+E V D A D+ +
Sbjct: 410 RTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLG 469
Query: 640 ETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVL 699
E + + + P P+ + L+ +R L V+ V
Sbjct: 470 ERSCVFIIPRDEAPKAAELKAFLR-------------------ERGLAAYKIPDRVEFVE 510
Query: 700 EFPRTASNKLLRRVLKDQLKHEL 722
FP+T K+ ++ L++ + +L
Sbjct: 511 SFPQTGVGKVSKKALREAISEKL 533
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 114/475 (24%), Positives = 166/475 (34%), Gaps = 97/475 (20%)
Query: 191 DSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSK-GDAIAIDMPMTVHAVII 249
DS+AV+ E +++Y+EL + +A +L K G+ + + I
Sbjct: 40 DSIAVIDGE--------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYIT 91
Query: 250 YLAIILAGYVVVSIADSFAAREI-ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGP 308
+ A++ G V S E+ A ++ A I + L G F L + V E
Sbjct: 92 FFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDF-LNTFVTEHSS 150
Query: 309 LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTT 368
++ V L +D G Q ++ HP + P D V S GTT
Sbjct: 151 IRVVQLL---NDSGEHNLQDAIN----------HPAEDF-TATPSPADEVAYFQLSGGTT 196
Query: 369 GEPKAIPWTQ---LSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAAL 425
G PK IP T +R + E + + P + M FL+G +
Sbjct: 197 GTPKLIPRTHNDYYYSVRRSVEIC-QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255
Query: 426 ALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNV 485
L F ++ V+V VP V W LQ L + R+
Sbjct: 256 VLAADPSATLCF-PLIEKHQVNVTALVPPAVSLW-----LQALIEGESRA---------- 299
Query: 486 DDDLWLASKAYYKPIIECCGGTELASSYIQ------GSMLQPQAFGAFSTATMTTGFV-- 537
LAS + GG L+++ G LQ Q FG M G V
Sbjct: 300 ----QLASLKLLQ-----VGGARLSATLAARIPAEIGCQLQ-QVFG------MAEGLVNY 343
Query: 538 ---------ILDELGVPY-PDDQPCVGEVGLFPLYLGATDRLL------------NADHE 575
I+ G P PDD+ V + PL G RL+ + H
Sbjct: 344 TRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHN 403
Query: 576 EVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERV 630
F Y GD+I GYI VQGR D +N GG K ++ EIE +
Sbjct: 404 ASAFDANGFYCS------GDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL 452
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 118/538 (21%), Positives = 202/538 (37%), Gaps = 58/538 (10%)
Query: 201 RCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYV 259
R V+R TY E+ +R + L + GD +A + Y A+ G V
Sbjct: 39 RLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAV 98
Query: 260 VVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGD 319
+ + + +EIA L ++ K + +L PL + G LK V V+ D
Sbjct: 99 LHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIR--GELKTVQHFVVMD 150
Query: 320 DVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQL 379
+ + + +++++ L + PV P + + +++GTTG PK + ++
Sbjct: 151 E---KAPEGYLAYEEALG--------EEADPVRVPERAACGMAYTTGTTGLPKGVVYSHR 199
Query: 380 SPI--RCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSF 437
+ + AA + DV + V + +++ L GA L S
Sbjct: 200 ALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASL 259
Query: 438 GKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYY 497
+ GV+ VP++ A + G +R G S L +
Sbjct: 260 VELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGG--SAAPRSLIARFERMG 317
Query: 498 KPIIECCGGTELASSYIQG---SMLQPQAFGAFSTATMTTGFVI-------LDELGVPYP 547
+ + G TE + +Q S L+ + T TG I DE G P P
Sbjct: 318 VEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVP 377
Query: 548 DDQPCVGEVGL-----FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVG 602
D +GEV L Y G + +A + +F R GDI
Sbjct: 378 KDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFF------------RTGDIAVWDEE 425
Query: 603 GYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVL 662
GY+ ++ R D + GG SSV++E G + ++ AA+ P E + VV+
Sbjct: 426 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPK--VKEAAVVAIPHPKWQE-RPLAVVV 482
Query: 663 KKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKH 720
+G P + + + + P V E PRT++ K L+R L++Q K+
Sbjct: 483 PRGEKPTPEELNEHLLKAGFAKWQLPDAYV----FAEEIPRTSAGKFLKRALREQYKN 536
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 586 KGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAIS 645
KG R GD+ G++ Q R + + G + E+E + E++ + A I
Sbjct: 413 KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLX-KHEAVXDVAVIG 471
Query: 646 VSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTA 705
P EV +VLK + + VD+ +I + ++ ++ +V V+ V E PRTA
Sbjct: 472 -KPDEEAGEVPKAFIVLKPEYRGK-VDEEDII--EWVRERISGYKRVREVEFVEELPRTA 527
Query: 706 SNKLLRRVLKDQ 717
S KLLRR+L+++
Sbjct: 528 SGKLLRRLLREK 539
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 110/524 (20%), Positives = 196/524 (37%), Gaps = 57/524 (10%)
Query: 211 TYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAA 269
TY ++ VA+ L+ + +GD I + +P + V+ +L G ++ +
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 270 REIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQD 329
E+A + S+AK + TQ + F S V V+ D + +
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARESDVK-------VMCVDSAPDGCLHFSELT 163
Query: 330 VSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW 389
+ ++ VD P D V+ + +SSGTTG PK + T I A+
Sbjct: 164 QADENEAPQVDISP------------DDVVALPYSSGTTGLPKGVMLTHKGLITSVAQ-- 209
Query: 390 GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLE-------RSFGKFVQ 442
+D ++Y ++ + P+ + S L G+P+ S ++
Sbjct: 210 -QVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIE 268
Query: 443 DSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIE 502
VS+ VP ++ + + L D + +R S G + + + +K + +
Sbjct: 269 KYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQ 328
Query: 503 CCGGTELASSYIQGSMLQPQAF----GAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVG 557
G TE + F GA T I+D E G P +QP GE+
Sbjct: 329 GYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEIC 386
Query: 558 LFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNL 617
+ D+++ + + I K L IV R + +
Sbjct: 387 I------RGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVD-RLKELIKY 439
Query: 618 GGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPV-DKLKM 676
G + + E+E + E I + A + + G EV V VV K SQ D++K
Sbjct: 440 KGFQVAPAELEALLIAHPE-ISDAAVVGLKDEDAG-EVPVAFVV--KSEKSQATEDEIKQ 495
Query: 677 IFSKAIQRNLNPLF--KVSLVKIVLEFPRTASNKLLRRVLKDQL 718
SK + +F ++ V + P+ S K+LR+ LK++L
Sbjct: 496 YISKQV------IFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 96/432 (22%), Positives = 167/432 (38%), Gaps = 55/432 (12%)
Query: 210 MTYKELRERVMLVANALDTMFS-KGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFA 268
++Y+EL E +A L + KG +A+ ++ VI L ++ AG + +
Sbjct: 490 LSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLP 549
Query: 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI--QLR 326
I+ L S A + T + ++ E +A LP G + I Q R
Sbjct: 550 EDRISYMLADSAAACLLT-------------HQEMKE----QAAELPYTGTTLFIDDQTR 592
Query: 327 QQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA 386
++ + D + +D + P Y I+++SGTTG+PK T + I+
Sbjct: 593 FEEQA-SDPATAIDPND------PAY--------IMYTSGTTGKPKGNITTHAN-IQGLV 636
Query: 387 EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPL---ERSFGKFVQD 443
+ ++ D + +N + ++S L+ A L + L ER +Q+
Sbjct: 637 KHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQE 696
Query: 444 SGVSVLGTVPSLVKAWKNTNCLQGLDWTK-IRSFASTGETSNVDDDLWLASKAYYKPIIE 502
+ V+V+ +L + G DW K +R GE ++V +I
Sbjct: 697 N-VNVMFATTALFNLLTDA----GEDWMKGLRCILFGGERASVPHVRKALRIMGPGKLIN 751
Query: 503 CCG---GTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLF 559
C G GT A++++ + + IL+E P G VG
Sbjct: 752 CYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQP-----FGAVGEL 806
Query: 560 PLY-LGATDRLLN-ADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNL 617
+ +G + +N AD + F P G L R GD+ + G I GR DD + +
Sbjct: 807 CISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKI 866
Query: 618 GGIKTSSVEIER 629
G + EIE+
Sbjct: 867 RGHRIELEEIEK 878
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 97/251 (38%), Gaps = 35/251 (13%)
Query: 233 GDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILR 292
GD +A+ M A++ LAI+ G V + R VS++ DFIL
Sbjct: 85 GDRVALRMSPGAEAIVAILAILKCGAAYVPVD---------LRNPVSRS------DFIL- 128
Query: 293 GGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVY 352
A++G + P G V +R V+ C D PGP P
Sbjct: 129 -----------ADSGASALIGEPHEGCAVTRVVRTAAVA-----ECKDAEPGPVTGAPGP 172
Query: 353 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGP 412
D + ++++SGTTG PK +P + + A A D D + +L +
Sbjct: 173 GAED-MAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFDFSGDDRWLLFHSLSFDFSV 231
Query: 413 IILFSSFLSGAALAL--YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDW 470
++ +F +GA L + + + + + D GV+V+ P+ A G D
Sbjct: 232 WEIWGAFSTGAELVVLPHWAARTPEQYLAVIIDRGVTVINQTPTAFLALTEAAVRGGRDV 291
Query: 471 TKIRSFASTGE 481
+ +R GE
Sbjct: 292 SGLRYVIFGGE 302
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 124/523 (23%), Positives = 196/523 (37%), Gaps = 62/523 (11%)
Query: 209 RMTYKELRERVMLVANALDT-MFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
R+T+ ELR RV VA L +A+ P + VI LA+ G V +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ 327
+ E+A ++ +G T I G + + + ++G ++ +GD V
Sbjct: 89 KSAELAELIK----RGEMTAAVIAVGRQ---VADAIFQSGSGARIIF--LGDLV------ 133
Query: 328 QDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE 387
+D Y GP P P I ++SGTTG PKA + P R A
Sbjct: 134 -----RD---GEPYSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAES 180
Query: 388 AWGHIDMKVG------DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGK 439
+ +VG +V L V+G +++ + L G + + P++ +
Sbjct: 181 RVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--Q 238
Query: 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYY 497
VQ V+ L P+ + A G L +R G T D L + +
Sbjct: 239 LVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQH 295
Query: 498 KP--IIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGE 555
P + G TE +S M QP+ + + ++ GV D+ GE
Sbjct: 296 LPGEKVNAYGTTEAMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGE 349
Query: 556 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 615
G L + A+D + + + G + R D+ T G + + GR DD +
Sbjct: 350 EG--ELIVAASDSAFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVDDMI 405
Query: 616 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 675
GG EIERV G + E I ++ G V CVV + G T D L
Sbjct: 406 ISGGENIHPSEIERVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALD 462
Query: 676 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQL 718
+ L + I+ + P+ A NK+LRR L Q+
Sbjct: 463 TFCRSS---ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 124/523 (23%), Positives = 196/523 (37%), Gaps = 62/523 (11%)
Query: 209 RMTYKELRERVMLVANALDT-MFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
R+T+ ELR RV VA L +A+ P + VI LA+ G V +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ 327
+ E+A ++ +G T I G + + + ++G ++ +GD V
Sbjct: 89 KSAELAELIK----RGEMTAAVIAVGRQ---VADAIFQSGSGARIIF--LGDLV------ 133
Query: 328 QDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE 387
+D Y GP P P I ++SGTTG PKA + P R A
Sbjct: 134 -----RD---GEPYSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAES 180
Query: 388 AWGHIDMKVG------DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGK 439
+ +VG +V L V+G +++ + L G + + P++ +
Sbjct: 181 RVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDAL--Q 238
Query: 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYY 497
VQ V+ L P+ + A G L +R G T D L + +
Sbjct: 239 LVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQH 295
Query: 498 KP--IIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGE 555
P + G TE +S M QP+ + + ++ GV D+ GE
Sbjct: 296 LPGEKVNIYGTTEAMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGE 349
Query: 556 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 615
G L + A+D + + + G + R D+ T G + + GR DD +
Sbjct: 350 EG--ELIVAASDSAFVGYLNQPEATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVDDMI 405
Query: 616 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 675
GG EIERV G + E I ++ G V CVV + G T D L
Sbjct: 406 ISGGENIHPSEIERVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALD 462
Query: 676 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQL 718
+ L + I+ + P+ A NK+LRR L Q+
Sbjct: 463 TFCRSS---ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 31/199 (15%)
Query: 211 TYKELRERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAR 270
TYK+L E VAN + G AIA+ + ++ A I + I +G V I
Sbjct: 57 TYKKLNETANQVANLIIHASLHGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEAGLPND 116
Query: 271 EIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDV 330
+ LR S+A F D G + P +KV L ++
Sbjct: 117 RKSFLLRDSRAAXAFVCDNNF-DGVELPPETKV---------------------LDTKNQ 154
Query: 331 SWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG 390
S+ + LS D YP +D+ +L++SG+TG PK + ++ + + ++AWG
Sbjct: 155 SFIENLSTQDTSDILNNYP---ENLDAY--LLYTSGSTGTPKGVRVSRHN-LSSFSDAWG 208
Query: 391 HIDMKVGDVYCWPTNLGWV 409
+ +G+V LG V
Sbjct: 209 KL---IGNVAPKSLELGGV 224
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 124/523 (23%), Positives = 196/523 (37%), Gaps = 62/523 (11%)
Query: 209 RMTYKELRERVMLVANALDT-MFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
R+T+ ELR RV VA L +A+ P + VI LA+ G V +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ 327
+ E+A ++ +G T I G + + + ++G ++ +GD V
Sbjct: 89 KSAELAELIK----RGEMTAAVIAVGRQ---VADAIFQSGSGARIIF--LGDLV------ 133
Query: 328 QDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE 387
+D Y GP P P I ++SGTTG PKA + P R A
Sbjct: 134 -----RD---GEPYSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAES 180
Query: 388 AWGHIDMKVG------DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGK 439
+ +VG +V L V+G +++ + L G + + P++ +
Sbjct: 181 RVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--Q 238
Query: 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYY 497
VQ V+ L P+ + A G L +R G T D L + +
Sbjct: 239 LVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQH 295
Query: 498 KP--IIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGE 555
P + G TE +S M QP+ + + ++ GV D+ GE
Sbjct: 296 LPGEKVNIYGTTEAMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGE 349
Query: 556 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 615
G L + A+D + + + G + R D+ T G + + GR DD +
Sbjct: 350 EG--ELIVAASDSAFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVDDMI 405
Query: 616 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 675
GG EIERV G + E I ++ G V CVV + G T D L
Sbjct: 406 ISGGENIHPSEIERVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALD 462
Query: 676 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQL 718
+ L + I+ + P+ A NK+LRR L Q+
Sbjct: 463 TFCRSS---ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 124/523 (23%), Positives = 196/523 (37%), Gaps = 62/523 (11%)
Query: 209 RMTYKELRERVMLVANALDT-MFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
R+T+ ELR RV VA L +A+ P + VI LA+ G V +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ 327
+ E+A ++ +G T I G + + + ++G ++ +GD V
Sbjct: 89 KSAELAELIK----RGEMTAAVIAVGRQ---VADAIFQSGSGARIIF--LGDLV------ 133
Query: 328 QDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE 387
+D Y GP P P I ++SGTTG PKA + P R A
Sbjct: 134 -----RD---GEPYSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAES 180
Query: 388 AWGHIDMKVG------DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGK 439
+ +VG +V L V+G +++ + L G + + P++ +
Sbjct: 181 RVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--Q 238
Query: 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYY 497
VQ V+ L P+ + A G L +R G T D L + +
Sbjct: 239 LVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQH 295
Query: 498 KP--IIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGE 555
P + G TE +S M QP+ + + ++ GV D+ GE
Sbjct: 296 LPGEKVNGYGTTEAMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGE 349
Query: 556 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 615
G L + A+D + + + G + R D+ T G + + GR DD +
Sbjct: 350 EG--ELIVAASDSAFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVDDMI 405
Query: 616 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 675
GG EIERV G + E I ++ G V CVV + G T D L
Sbjct: 406 ISGGENIHPSEIERVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALD 462
Query: 676 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQL 718
+ L + I+ + P+ A NK+LRR L Q+
Sbjct: 463 TFCRSS---ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 56/126 (44%), Gaps = 7/126 (5%)
Query: 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGP 653
GD+ K GY+ + GR D + GG EIE D A ++E+A I V A G
Sbjct: 381 GDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AXPGVVESAVIGVPHADFG- 438
Query: 654 EVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRV 713
E + VV KG T +D+ +++ + L V V + PR K+ + V
Sbjct: 439 EGVTAVVVRDKGAT---IDEAQVL--HGLDGQLAKFKXPKKVIFVDDLPRNTXGKVQKNV 493
Query: 714 LKDQLK 719
L++ K
Sbjct: 494 LRETYK 499
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 208 NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS 266
++++Y EL R VAN L GD +A +V A+++YLA + AG V + + +
Sbjct: 27 DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLNTA 86
Query: 267 FAAREI 272
+ E+
Sbjct: 87 YTLHEL 92
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 57/279 (20%), Positives = 104/279 (37%), Gaps = 49/279 (17%)
Query: 221 LVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSK 280
+ AN ++ D + + +P V+ +LA G + F EIA + + S
Sbjct: 101 IAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASN 160
Query: 281 AKGIFTQDFILRGGRKFPLYSKVAEAGPLK---AVVLPVIGDDVGI----------QLRQ 327
K I T+ V + PL+ VV+ I D+ + +L Q
Sbjct: 161 TKLIITE------------ARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQ 208
Query: 328 QDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE 387
+ + V+ P D V+ + +SSGTTG PK + T + A+
Sbjct: 209 STTEASEVIDSVEISP------------DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256
Query: 388 AWGHIDMKVGDVYCWPTNLGWVMGPI--------ILFSSFLSGAALALYHGSPLERSFGK 439
+D + ++Y ++ + P+ I+ GAA+ + + +
Sbjct: 257 ---QVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLL-E 312
Query: 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFAS 478
+Q V+V VP +V A ++ + D + IR S
Sbjct: 313 LIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKS 351
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 89/467 (19%), Positives = 174/467 (37%), Gaps = 71/467 (15%)
Query: 191 DSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSKGDA-IAIDMPMTVHAVII 249
D A VWR+ ++TYK+L+E +A+ + + + + I + M +I
Sbjct: 16 DQTAFVWRD--------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIIN 67
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL 309
+L + AG+ + + S A + S AK + L
Sbjct: 68 FLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLL------------------------L 103
Query: 310 KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTG 369
A + V D+ +++ +D + KD H G P D I+++SG+TG
Sbjct: 104 SATAVTVT--DLPVRIVSED-NLKDIFFT---HKGNTPNPEHAVKGDENFYIIYTSGSTG 157
Query: 370 EPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429
PK + T + A +++ G V+ + + + ++ S ++G L
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217
Query: 430 GSPLERSFGKF--VQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTK-----IRSFASTGET 482
+ R F ++ S + V + PS + CL +++ +++F GE
Sbjct: 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEM-----CLMEASFSESMLPNMKTFLFCGEV 272
Query: 483 SNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGF------ 536
+ L + I+ G TE A+ + G + + + ++ G+
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTE-ATVAVTGIHVTEEVLDQYK--SLPVGYCKSDCR 329
Query: 537 -VILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGD 595
+I+ E G PD + GE+ + +G + + E+ + G + GD
Sbjct: 330 LLIMKEDGTIAPDGEK--GEI----VIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD 383
Query: 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE---RVCDGADESIL 639
G + GR D + L G + EIE R C + +++
Sbjct: 384 -AGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVI 429
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 89/467 (19%), Positives = 174/467 (37%), Gaps = 71/467 (15%)
Query: 191 DSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSKGDA-IAIDMPMTVHAVII 249
D A VWR+ ++TYK+L+E +A+ + + + + I + M +I
Sbjct: 16 DQTAFVWRD--------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIIN 67
Query: 250 YLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL 309
+L + AG+ + + S A + S AK + L
Sbjct: 68 FLGCVKAGHAYIPVDLSIPADRVQRIAENSGAKLL------------------------L 103
Query: 310 KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTG 369
A + V D+ +++ +D + KD H G P D I+++SG+TG
Sbjct: 104 SATAVTVT--DLPVRIVSED-NLKDIFFT---HKGNTPNPEHAVKGDENFYIIYTSGSTG 157
Query: 370 EPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429
PK + T + A +++ G V+ + + + ++ S ++G L
Sbjct: 158 NPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAID 217
Query: 430 GSPLERSFGKF--VQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTK-----IRSFASTGET 482
+ R F ++ S + V + PS + CL +++ +++F GE
Sbjct: 218 KDMIARPKDLFASLEQSDIQVWTSTPSFAEM-----CLMEASFSESMLPNMKTFLFCGEV 272
Query: 483 SNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGF------ 536
+ L + I+ G TE A+ + G + + + ++ G+
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTE-ATVAVTGIHVTEEVLDQYK--SLPVGYCKSDCR 329
Query: 537 -VILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGD 595
+I+ E G PD + GE+ + +G + + E+ + G + GD
Sbjct: 330 LLIMKEDGTIAPDGEK--GEI----VIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGD 383
Query: 596 IIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIE---RVCDGADESIL 639
G + GR D + L G + EIE R C + +++
Sbjct: 384 -AGYVENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVI 429
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 123/523 (23%), Positives = 195/523 (37%), Gaps = 62/523 (11%)
Query: 209 RMTYKELRERVMLVANALDT-MFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
R+T+ ELR RV VA L +A+ P + VI LA+ G V +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ 327
+ E+A ++ +G T I G + + + ++G ++ +GD V
Sbjct: 89 KSAELAELIK----RGEMTAAVIAVGRQ---VADAIFQSGSGARIIF--LGDLV------ 133
Query: 328 QDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE 387
+D Y GP P P I ++SGTTG PKA + P R A
Sbjct: 134 -----RD---GEPYSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAES 180
Query: 388 AWGHIDMKVG------DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGK 439
+ +VG +V L V+G +++ + L G + + P++ +
Sbjct: 181 RVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--Q 238
Query: 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYY 497
VQ V+ L P+ + A G L +R G T D L + +
Sbjct: 239 LVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATM---PDAVLETVHQH 295
Query: 498 KP--IIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGE 555
P + G TE +S M QP+ + + ++ GV D+ GE
Sbjct: 296 LPGEKVNIYGTTEAMNSLY---MRQPKTGTEMAPGFFSEVRIVRIGGGV---DEIVANGE 349
Query: 556 VGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTM 615
G L + A+D + + + G + R D+ T G + + GR D +
Sbjct: 350 EG--ELIVAASDSAFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGRVPDMI 405
Query: 616 NLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLK 675
GG EIERV G + E I ++ G V CVV + G T D L
Sbjct: 406 ISGGENIHPSEIERVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS-ADALD 462
Query: 676 MIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQL 718
+ L + I+ + P+ A NK+LRR L Q+
Sbjct: 463 TFCRSS---ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 123/528 (23%), Positives = 191/528 (36%), Gaps = 72/528 (13%)
Query: 209 RMTYKELRERVMLVANALDT-MFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
R+T+ ELR RV VA L +A+ P + VI LA+ G V +
Sbjct: 29 RLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALLNPRL 88
Query: 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQ 327
+ E+A ++ +G T I G + + + ++G ++ +GD V
Sbjct: 89 KSAELAELIK----RGEXTAAVIAVGRQ---VADAIFQSGSGARIIF--LGDLV------ 133
Query: 328 QDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE 387
+D Y GP P P I ++SGTTG PKA + P R A
Sbjct: 134 -----RD---GEPYSYGPPIEDPQREPAQPAF-IFYTSGTTGLPKA----AIIPQRAAES 180
Query: 388 AWGHIDMKVG------DVYCWPTNLGWVMG--PIILFSSFLSGAALALYHGSPLERSFGK 439
+VG +V L V+G +++ + L G + + P++ +
Sbjct: 181 RVLFXSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDAL--Q 238
Query: 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASKAYY 497
VQ V+ L P+ + A G L +R G T D L + +
Sbjct: 239 LVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATX---PDAVLETVHQH 295
Query: 498 KP--IIECCGGTELASSYI-----QGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQ 550
P + G TE +S G+ P F + G D+
Sbjct: 296 LPGEKVNIYGTTEAXNSLYXRQPKTGTEXAPGFFSEVRIVRIGGGV-----------DEI 344
Query: 551 PCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGR 610
GE G L + A+D + + + G + R D+ T G + + GR
Sbjct: 345 VANGEEG--ELIVAASDSAFVGYLNQPQATAEKLQDGWY--RTSDVAVWTPEGTVRILGR 400
Query: 611 ADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQP 670
DD + GG EIERV G + E I ++ G V CVV + G T
Sbjct: 401 VDDXIISGGENIHPSEIERVL-GTAPGVTEVVVIGLADQRWGQSV-TACVVPRLGETLS- 457
Query: 671 VDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQL 718
D L + L + I+ + P+ A NK+LRR L Q+
Sbjct: 458 ADALDTFCRSS---ELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 99/445 (22%), Positives = 163/445 (36%), Gaps = 73/445 (16%)
Query: 205 SSVNRMTYKELRERVMLVANALDTMFS--KGDAIAIDMPMTVHAVIIYLAIILAGYVVVS 262
S +TY+EL E+ A A+ S K I + M H ++ +L + AG+ +
Sbjct: 22 SQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81
Query: 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVG 322
+ S + IA + S A+ + + A L + D VG
Sbjct: 82 VDLSIPSERIAKIIESSGAELL------------------------IHAAGLSI--DAVG 115
Query: 323 IQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPI 382
Q+ Q VS ++ L + G + I+++SG+TG PK + Q+S
Sbjct: 116 QQI--QTVSAEELLE----NEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGV---QISAA 166
Query: 383 RCAA-EAWGHIDMKV--GDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGK 439
+ W D V G ++ + + + L+ SG L + +
Sbjct: 167 NLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVL 226
Query: 440 F--VQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTK-----IRSFASTGETSNVDDDLWLA 492
F ++ SG++V + PS V+ CL +++ +F GE V L
Sbjct: 227 FEELKKSGLNVWTSTPSFVQM-----CLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALL 281
Query: 493 SKAYYKPIIECCGGTE----LASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPD 548
+ I G TE + S I ++ A I+DE G P P+
Sbjct: 282 ERFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPE 341
Query: 549 DQPCVGEV-----GLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGG 603
+ GE+ + YLG + E+ +FS ++G R GD G
Sbjct: 342 GEK--GEIVIAGPSVSRGYLGEPELT-----EKAFFS----HEGQWAYRTGD-AGFIQDG 389
Query: 604 YIIVQGRADDTMNLGGIKTSSVEIE 628
I QGR D + L G + EIE
Sbjct: 390 QIFCQGRLDFQIKLHGYRMELEEIE 414
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 74/309 (23%), Positives = 114/309 (36%), Gaps = 28/309 (9%)
Query: 336 LSCVDYHPGPKYYPPVYRPV---DSVINILFSSGTTGEPKAIPWTQLSPIR-CAAEAWGH 391
L CV P V RP D + I FSSGTTG PKAI T R C +++
Sbjct: 141 LPCVPVRHLPAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFLA 200
Query: 392 IDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERS-FGKFVQDSGVSVLG 450
++ + P L + + ++ + L+G L PL+ + + + G
Sbjct: 201 FAPQMRFLVNSP--LSFDAATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAW 258
Query: 451 TVPSLVKAWKNT--NCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTE 508
SL + +CL GL R + G+ +V + ++ G TE
Sbjct: 259 LTASLFNTLVDLDPDCLGGL-----RQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTE 313
Query: 509 ----LASSYIQGSMLQPQAFGAFSTATMTTGFVILDELG--VPYPDDQPCVGEVGLFPLY 562
+ L+ A T ++LDE G + PD GE+ F
Sbjct: 314 NTTFTCCHVVTDDDLEEDDI-PIGKAIAGTAVLLLDEHGQEIAEPDR---AGEIVAFGAG 369
Query: 563 LGATDRLLNADHEEVYFSGMPIYKGMHLR--RHGDIIKRTVGGYIIVQGRADDTMNLGGI 620
L R +A F +P Y+G LR R GD + G + GR D + L G
Sbjct: 370 LAQGYR-NDAARTRASFVELP-YRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGY 427
Query: 621 KTSSVEIER 629
+ +E+
Sbjct: 428 RLDLPALEQ 436
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 66/321 (20%), Positives = 119/321 (37%), Gaps = 35/321 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+TY E E + +A A+ + I + ++ + L + G V D +
Sbjct: 55 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCY 114
Query: 268 AAREIATRLRVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI 323
RE+ + +S+ +F IL +K P+ K+ +++ D G
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGF 166
Query: 324 QLRQQDVSWKDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLS 380
Q S F++ PG Y P + ++ I+ SSG+TG PK +
Sbjct: 167 Q------SMYTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL---- 215
Query: 381 PIRCAAEAWGHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPL 433
P R A + H D G+ T + V+ G +SG + L +
Sbjct: 216 PHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFE- 274
Query: 434 ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493
E F + +QD + VP+L + + D + + AS G + + +A
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFLAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 494 KAYYKPIIECCGGTELASSYI 514
+ + I + G TE S+ +
Sbjct: 335 RFHLPGIRQGYGLTETTSAIL 355
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 9/140 (6%)
Query: 582 MPIYKGMHLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDGADE 636
MP R G I +G GY+ + GR D + GG EIE D A
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID-AMP 422
Query: 637 SILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVK 696
++E+A I V A G E + VVL + F P + L + L V
Sbjct: 423 GVVESAVIGVPHADFG-EGVTAFVVLXREF--APSEILAEELXAFVXDRLAXFXMPXXVI 479
Query: 697 IVLEFPRTASNKLLRRVLKD 716
V + PR + VL++
Sbjct: 480 FVDDLPRNTMGAVQXNVLRE 499
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 208 NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS 266
+ ++Y EL R VAN L GD +A +V A+++YLA + AG V + + +
Sbjct: 27 DXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTA 86
Query: 267 FAAREI 272
+ E+
Sbjct: 87 YTLHEL 92
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 208 NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS 266
+ ++Y EL R VAN L GD +A +V A+++YLA + AG V + + +
Sbjct: 27 DXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTA 86
Query: 267 FAAREI 272
+ E+
Sbjct: 87 YTLHEL 92
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 51/140 (36%), Gaps = 12/140 (8%)
Query: 582 MPIYKGMHLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDGADE 636
MP R G I +G GY+ + GR D + GG EIE D A
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID-AMP 422
Query: 637 SILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVK 696
++E+A I V A G E + VVL + F L + L V
Sbjct: 423 GVVESAVIGVPHADFG-EGVTAFVVLXREFAPSEAQVL-----HGLDGQLAXFXMPXXVI 476
Query: 697 IVLEFPRTASNKLLRRVLKD 716
V + PR + VL++
Sbjct: 477 FVDDLPRNTMGAVQXNVLRE 496
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 208 NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADS 266
+ ++Y EL R VAN L GD +A +V A+++YLA + AG V + + +
Sbjct: 27 DXISYAELVARAGRVANVLVARGLQVGDRVAAQTEXSVEALVLYLATVRAGGVYLPLNTA 86
Query: 267 FAAREI 272
+ E+
Sbjct: 87 YTLHEL 92
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 12/140 (8%)
Query: 582 MPIYKGMHLRRHGDIIKRTVG-----GYIIVQGRADDTMNLGGIKTSSVEIERVCDGADE 636
MP R G I +G GY+ + GR D + GG EIE D A
Sbjct: 364 MPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID-AMP 422
Query: 637 SILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVK 696
++E+A I V A G E + VV G T +D+ +++ + L V
Sbjct: 423 GVVESAVIGVPHADFG-EGVTAVVVRDXGAT---IDEAQVL--HGLDGQLAXFXMPXXVI 476
Query: 697 IVLEFPRTASNKLLRRVLKD 716
V + PR + VL++
Sbjct: 477 FVDDLPRNTMGAVQXNVLRE 496
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 32.7 bits (73), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 103/275 (37%), Gaps = 55/275 (20%)
Query: 188 KEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHA 246
+ D+VA++ D +TY L ER +A+ L + + G + + +
Sbjct: 87 RAPDAVALLHEADE--------LTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM 138
Query: 247 VIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEA 306
V+ LA++ AG + F +A L + A + T PL +
Sbjct: 139 VVALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSR---------PL------S 183
Query: 307 GPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSG 366
G L + D+ D + + V GP + V ++F+SG
Sbjct: 184 GRLTGTTTLYVEDEA-----ASDAPAGNLATGV----GP----------EDVACVMFTSG 224
Query: 367 TTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGA 423
+TG PK + +SP R + + +V+ + + W + LF + L GA
Sbjct: 225 STGRPKGV----MSPHRALTGTYLGQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280
Query: 424 ALALYHGS---PLERSFGKFVQDSGVSVLGTVPSL 455
L G PLE G+ V GV++L SL
Sbjct: 281 RCVLQSGQNPDPLE--IGELVARHGVTMLQLSASL 313
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 67/168 (39%), Gaps = 12/168 (7%)
Query: 211 TYKELRERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAR 270
TY+ L L+A L + ID ++ ++I+ A LA + I
Sbjct: 28 TYQNLYCEASLLAKRLKAYQQSRVGLYIDN--SIQSIILIHACWLANIEIAMINTRLTPN 85
Query: 271 EIATRLRVSKAKGIF-TQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQD 329
E+ ++R + IF T LRG + L + AG ++ + +GIQ +
Sbjct: 86 EMTNQMRSIDVQLIFCTLPLELRGFQIVSL-DDIEFAGR-DITTNGLLDNTMGIQYDTSN 143
Query: 330 VSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWT 377
V P +D + +I+F+SGTTG KA+P T
Sbjct: 144 -------ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQT 184
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 119/321 (37%), Gaps = 35/321 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+TY E E + +A A+ + I + ++ + L + G V D +
Sbjct: 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 268 AAREIATRLRVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI 323
RE+ + +S+ +F IL +K P+ K+ +++ D G
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGF 161
Query: 324 QLRQQDVSWKDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLS 380
Q S F++ PG Y P + ++ I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL---- 210
Query: 381 PIRCAAEAWGHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPL 433
P R A + H D G+ T + V+ G + G + L +
Sbjct: 211 PHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE- 269
Query: 434 ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493
E F + +QD + VP+L + + + D + + AS G + + +A
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 494 KAYYKPIIECCGGTELASSYI 514
+ + I + G TE S+ +
Sbjct: 330 RFHLPGIRQGYGLTETTSAIL 350
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 119/321 (37%), Gaps = 35/321 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+TY E E + +A A+ + I + ++ + L + G V D +
Sbjct: 50 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 109
Query: 268 AAREIATRLRVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI 323
RE+ + +S+ +F IL +K P+ K+ +++ D G
Sbjct: 110 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGF 161
Query: 324 QLRQQDVSWKDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLS 380
Q S F++ PG Y P + ++ I+ SSG+TG PK +
Sbjct: 162 Q------SMYTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL---- 210
Query: 381 PIRCAAEAWGHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPL 433
P R A + H D G+ T + V+ G + G + L +
Sbjct: 211 PHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE- 269
Query: 434 ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493
E F + +QD + VP+L + + + D + + AS G + + +A
Sbjct: 270 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 329
Query: 494 KAYYKPIIECCGGTELASSYI 514
+ + I + G TE S+ +
Sbjct: 330 RFHLPGIRQGYGLTETTSAIL 350
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 65/321 (20%), Positives = 119/321 (37%), Gaps = 35/321 (10%)
Query: 209 RMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267
+TY E E + +A A+ + I + ++ + L + G V D +
Sbjct: 55 NITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIY 114
Query: 268 AAREIATRLRVSKAKGIFTQ----DFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGI 323
RE+ + +S+ +F IL +K P+ K+ +++ D G
Sbjct: 115 NERELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKI--------IIMDSKTDYQGF 166
Query: 324 QLRQQDVSWKDFLSCVDYHPGPKYY---PPVYRPVDSVINILFSSGTTGEPKAIPWTQLS 380
Q S F++ PG Y P + ++ I+ SSG+TG PK +
Sbjct: 167 Q------SMYTFVTS-HLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVAL---- 215
Query: 381 PIRCAAEAWGHI-DMKVGDVYCWPTNLGWVM------GPIILFSSFLSGAALALYHGSPL 433
P R A + H D G+ T + V+ G + G + L +
Sbjct: 216 PHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFE- 274
Query: 434 ERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493
E F + +QD + VP+L + + + D + + AS G + + +A
Sbjct: 275 EELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAK 334
Query: 494 KAYYKPIIECCGGTELASSYI 514
+ + I + G TE S+ +
Sbjct: 335 RFHLPGIRQGYGLTETTSAIL 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,277,791
Number of Sequences: 62578
Number of extensions: 987683
Number of successful extensions: 1887
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1774
Number of HSP's gapped (non-prelim): 83
length of query: 728
length of database: 14,973,337
effective HSP length: 106
effective length of query: 622
effective length of database: 8,340,069
effective search space: 5187522918
effective search space used: 5187522918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)