Query 004821
Match_columns 728
No_of_seqs 424 out of 3433
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:51:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004821.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004821hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 3.2E-95 1.1E-99 899.5 21.3 634 11-719 299-959 (1304)
2 1pg4_A Acetyl-COA synthetase; 100.0 9E-86 3.1E-90 760.2 55.7 580 121-722 24-623 (652)
3 1ry2_A Acetyl-coenzyme A synth 100.0 1.6E-85 5.6E-90 758.3 54.6 589 114-721 19-638 (663)
4 3etc_A AMP-binding protein; ad 100.0 8.6E-81 2.9E-85 708.9 49.0 552 127-720 15-579 (580)
5 4dg8_A PA1221; ANL superfamily 100.0 2.4E-81 8.2E-86 717.4 41.7 468 184-722 35-515 (620)
6 3ni2_A 4-coumarate:COA ligase; 100.0 2.5E-80 8.6E-85 700.5 46.7 489 185-720 31-535 (536)
7 3g7s_A Long-chain-fatty-acid-- 100.0 7.7E-81 2.6E-85 706.8 41.7 502 185-725 28-547 (549)
8 4fuq_A Malonyl COA synthetase; 100.0 1.8E-79 6.3E-84 687.6 45.4 485 186-722 10-502 (503)
9 3e7w_A D-alanine--poly(phospho 100.0 3.2E-79 1.1E-83 687.7 45.4 482 185-721 10-504 (511)
10 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.4E-79 4.9E-84 694.4 41.4 491 185-724 34-535 (539)
11 3fce_A D-alanine--poly(phospho 100.0 1.3E-79 4.5E-84 691.3 40.2 487 185-724 10-508 (512)
12 3r44_A Fatty acyl COA syntheta 100.0 1.7E-79 5.9E-84 690.2 40.3 483 185-723 25-516 (517)
13 3rg2_A Enterobactin synthase c 100.0 1.4E-78 4.9E-83 697.1 48.2 484 190-721 39-535 (617)
14 1amu_A GRSA, gramicidin synthe 100.0 6.3E-79 2.1E-83 691.6 41.8 469 185-718 48-527 (563)
15 3tsy_A Fusion protein 4-coumar 100.0 3.9E-79 1.3E-83 737.8 38.2 559 114-723 11-585 (979)
16 2d1s_A Luciferase, luciferin 4 100.0 1.3E-77 4.5E-82 679.4 47.6 492 186-724 36-547 (548)
17 3l8c_A D-alanine--poly(phospho 100.0 2.3E-78 8E-83 682.8 41.0 490 185-726 13-518 (521)
18 1t5h_X 4-chlorobenzoyl COA lig 100.0 2E-77 6.9E-82 671.8 48.3 475 185-719 11-503 (504)
19 4gr5_A Non-ribosomal peptide s 100.0 1.7E-79 6E-84 698.5 31.3 473 185-717 84-568 (570)
20 3c5e_A Acyl-coenzyme A synthet 100.0 4.2E-77 1.4E-81 677.6 50.4 516 164-721 28-563 (570)
21 3o83_A Peptide arylation enzym 100.0 8.6E-79 2.9E-83 688.9 33.0 491 185-720 39-540 (544)
22 1v25_A Long-chain-fatty-acid-C 100.0 3.6E-78 1.2E-82 683.3 36.1 490 185-723 27-539 (541)
23 3rix_A Luciferase, luciferin 4 100.0 4.7E-78 1.6E-82 684.1 31.5 504 185-727 29-549 (550)
24 3ivr_A Putative long-chain-fat 100.0 7E-78 2.4E-82 676.7 32.6 482 185-723 15-504 (509)
25 2v7b_A Benzoate-coenzyme A lig 100.0 4.3E-76 1.5E-80 665.4 46.3 484 186-716 34-528 (529)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 3.1E-76 1.1E-80 661.4 36.4 460 185-716 31-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 5.7E-75 1.9E-79 652.0 40.4 483 185-721 10-498 (501)
28 3ite_A SIDN siderophore synthe 100.0 2.1E-74 7.3E-79 656.4 29.8 488 185-721 29-544 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 8.1E-73 2.8E-77 647.9 35.8 491 185-721 20-568 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 1.7E-70 5.7E-75 627.2 39.5 482 185-724 30-567 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2.4E-57 8.2E-62 506.5 26.4 384 185-610 33-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.5E-56 5E-61 478.2 23.0 317 355-721 36-355 (358)
33 2y4o_A Phenylacetate-coenzyme 100.0 2.8E-50 9.7E-55 444.1 22.2 331 352-713 88-437 (443)
34 3qov_A Phenylacetate-coenzyme 100.0 5.6E-50 1.9E-54 440.7 24.1 328 352-712 81-429 (436)
35 2y27_A Phenylacetate-coenzyme 100.0 2.5E-48 8.7E-53 427.7 23.8 330 352-713 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 2.6E-32 8.8E-37 293.1 15.5 237 353-620 88-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 8.6E-16 2.9E-20 132.9 7.0 96 609-711 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.6 4.8E-15 1.6E-19 127.9 8.6 97 609-712 1-102 (109)
39 4b2g_A GH3-1 auxin conjugating 98.8 8.4E-08 2.9E-12 105.7 18.5 72 590-663 411-493 (609)
40 4eql_A 4-substituted benzoates 98.8 4.8E-08 1.6E-12 107.5 15.5 133 470-633 296-446 (581)
41 4epl_A Jasmonic acid-amido syn 98.8 1.5E-07 5.2E-12 103.3 18.0 163 470-664 301-489 (581)
42 2jgp_A Tyrocidine synthetase 3 98.7 1.6E-10 5.4E-15 129.3 -9.7 135 11-153 372-516 (520)
43 4hvm_A Tlmii; PSI-biology, mid 98.2 8.6E-09 2.9E-13 114.3 -9.4 134 11-154 297-468 (493)
44 1l5a_A Amide synthase, VIBH; n 98.2 7.5E-09 2.6E-13 112.8 -11.3 138 11-159 276-423 (436)
45 2xhg_A Tyrocidine synthetase A 97.2 3.1E-06 1E-10 92.9 -9.7 126 11-147 307-457 (466)
46 1q9j_A PAPA5, polyketide synth 91.8 0.0026 9E-08 68.1 -8.5 109 22-148 296-418 (422)
47 2y27_A Phenylacetate-coenzyme 85.7 6 0.0002 41.9 12.7 100 188-289 87-191 (437)
48 3qov_A Phenylacetate-coenzyme 84.6 5.5 0.00019 42.2 11.7 97 191-289 86-187 (436)
49 2y4o_A Phenylacetate-coenzyme 84.1 6.8 0.00023 41.5 12.2 99 189-289 90-193 (443)
50 3rix_A Luciferase, luciferin 4 80.8 3.9 0.00013 44.9 8.9 100 355-459 34-136 (550)
51 3g7s_A Long-chain-fatty-acid-- 78.0 11 0.00037 41.3 11.4 103 354-459 32-138 (549)
52 3ivr_A Putative long-chain-fat 77.2 8.2 0.00028 41.8 10.0 95 354-458 19-116 (509)
53 1v25_A Long-chain-fatty-acid-C 76.9 12 0.00041 40.8 11.4 100 354-459 31-133 (541)
54 3ni2_A 4-coumarate:COA ligase; 75.2 8.8 0.0003 41.9 9.6 97 354-458 35-134 (536)
55 3c5e_A Acyl-coenzyme A synthet 75.1 13 0.00045 40.8 11.1 101 354-459 56-160 (570)
56 1t5h_X 4-chlorobenzoyl COA lig 74.0 15 0.00051 39.6 11.0 98 354-459 15-117 (504)
57 3t5a_A Long-chain-fatty-acid-- 72.8 20 0.0007 38.1 11.7 105 354-462 37-149 (480)
58 3r44_A Fatty acyl COA syntheta 71.3 18 0.00062 39.1 10.9 95 354-456 29-126 (517)
59 3etc_A AMP-binding protein; ad 71.0 17 0.00059 40.0 10.8 95 354-453 69-166 (580)
60 1amu_A GRSA, gramicidin synthe 70.5 18 0.00062 39.7 10.8 95 354-458 52-149 (563)
61 1pg4_A Acetyl-COA synthetase; 69.6 19 0.00063 40.4 10.8 96 354-453 89-187 (652)
62 1mdb_A 2,3-dihydroxybenzoate-A 69.4 27 0.00093 37.9 11.9 90 354-453 38-130 (539)
63 1ry2_A Acetyl-coenzyme A synth 69.0 22 0.00074 40.0 11.1 97 354-454 95-195 (663)
64 4fuq_A Malonyl COA synthetase; 68.5 18 0.00063 38.9 10.2 80 375-455 28-110 (503)
65 4gr5_A Non-ribosomal peptide s 65.4 24 0.00082 38.7 10.5 92 354-455 88-182 (570)
66 3o83_A Peptide arylation enzym 65.2 23 0.0008 38.5 10.2 90 354-453 43-135 (544)
67 3kxw_A Saframycin MX1 syntheta 64.1 37 0.0013 37.2 11.7 101 354-460 24-130 (590)
68 2v7b_A Benzoate-coenzyme A lig 63.4 21 0.00071 38.7 9.3 95 354-458 36-133 (529)
69 3hgu_A EHPF; phenazine, antibi 61.5 31 0.001 35.2 9.8 98 189-289 89-214 (369)
70 2d1s_A Luciferase, luciferin 4 61.2 21 0.00071 39.0 8.9 85 374-459 51-138 (548)
71 3l8c_A D-alanine--poly(phospho 58.3 29 0.00099 37.4 9.3 90 354-453 17-109 (521)
72 3ipl_A 2-succinylbenzoate--COA 55.4 29 0.00099 37.2 8.7 90 354-453 14-103 (501)
73 3tsy_A Fusion protein 4-coumar 55.3 33 0.0011 40.5 9.8 95 354-456 74-171 (979)
74 3fce_A D-alanine--poly(phospho 54.5 35 0.0012 36.7 9.2 89 354-452 14-105 (512)
75 3ite_A SIDN siderophore synthe 54.5 51 0.0017 35.9 10.6 97 354-453 33-134 (562)
76 4dg8_A PA1221; ANL superfamily 48.8 55 0.0019 36.3 9.7 89 354-452 40-131 (620)
77 3ezx_A MMCP 1, monomethylamine 44.6 1.5E+02 0.005 27.6 10.5 90 398-489 93-193 (215)
78 3rg2_A Enterobactin synthase c 42.6 65 0.0022 35.6 9.1 89 355-453 39-130 (617)
79 3gqw_A Fatty acid AMP ligase; 42.4 69 0.0024 34.8 9.3 86 373-459 47-142 (576)
80 3e7w_A D-alanine--poly(phospho 41.7 69 0.0024 34.3 9.0 89 354-452 14-106 (511)
81 4h1h_A LMO1638 protein; MCCF-l 41.5 65 0.0022 32.3 8.1 70 230-300 9-98 (327)
82 3nyq_A Malonyl-COA ligase; A/B 39.9 71 0.0024 34.2 8.7 78 374-454 47-124 (505)
83 1yj7_A ESCJ; mixed alpha/beta, 39.7 1E+02 0.0036 27.5 8.2 71 624-699 92-163 (171)
84 4e5s_A MCCFLIKE protein (BA_56 34.4 1.2E+02 0.0042 30.3 8.8 70 230-300 9-98 (331)
85 3tla_A MCCF; serine protease, 33.4 97 0.0033 31.7 7.8 71 230-300 40-129 (371)
86 3sr3_A Microcin immunity prote 31.9 1.4E+02 0.0047 30.1 8.6 70 230-300 10-99 (336)
87 3vc3_A Beta-cyanoalnine syntha 30.8 1.6E+02 0.0054 29.7 9.0 78 210-288 63-141 (344)
88 2zzt_A Putative uncharacterize 27.5 1.6E+02 0.0056 23.7 6.9 64 623-688 11-74 (107)
89 3tbh_A O-acetyl serine sulfhyd 25.3 2.3E+02 0.0078 28.3 9.0 67 222-288 59-126 (334)
90 3ri6_A O-acetylhomoserine sulf 25.1 3.4E+02 0.012 28.1 10.6 58 230-289 118-176 (430)
91 4e4g_A Methylmalonate-semialde 23.7 2.3E+02 0.0077 30.5 9.0 46 399-444 165-215 (521)
92 2vsq_A Surfactin synthetase su 23.3 1.6E+02 0.0053 36.0 8.6 92 354-455 477-571 (1304)
93 2zbc_A 83AA long hypothetical 21.6 1.3E+02 0.0046 22.5 5.0 45 625-682 16-60 (83)
94 1t90_A MMSDH, probable methylm 21.4 2.7E+02 0.0092 29.5 9.0 47 398-444 143-194 (486)
95 3ju8_A Succinylglutamic semial 21.2 2.7E+02 0.0094 29.5 9.0 46 399-444 142-192 (490)
96 3ju7_A Putative PLP-dependent 20.7 2.6E+02 0.0089 28.2 8.6 62 224-288 68-137 (377)
97 4eb5_A Probable cysteine desul 20.7 4.3E+02 0.015 26.1 10.3 68 230-298 85-156 (382)
98 4hvk_A Probable cysteine desul 20.7 4.6E+02 0.016 25.7 10.6 68 230-298 85-156 (382)
99 1hf2_A MINC, septum site-deter 20.5 64 0.0022 30.0 3.3 55 578-632 102-170 (210)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=3.2e-95 Score=899.46 Aligned_cols=634 Identities=17% Similarity=0.175 Sum_probs=515.7
Q ss_pred hHHHHcCCCchhhHHHHHHHHHHhhhcCCC-CchhhhHHHHHHHhcCCCCCCCCchhHHHHHhhcccccCCCC-------
Q 004821 11 VDLVKVGLKVDEAEDFDNILKQLIDGSKGL-DPKEIWKELVARKVFKPWHPHGLHQLLYYSVYNDWDASINGP------- 82 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~------- 82 (728)
.|.+.+++.+++..+|.++|+++++...++ +||+|||++ |++.++ . .|+ |++|+++++.....
T Consensus 299 vntlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~-i~~~l~---~---~~l--f~~~~~~~~~~~~~~~~~~~~ 369 (1304)
T 2vsq_A 299 INVVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYD-IQSQAD---Q---PKL--IDHIIVFENYPLQDAKNEESS 369 (1304)
T ss_dssp CEEEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHH-HHHSSS---C---SSS--CCCEEEECSSCHHHHSCCCHH
T ss_pred eeEEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHH-HHHHhC---C---Ccc--cceeEEEeecccccccccccc
Confidence 567788999999999999999999986666 999999999 999885 2 344 66666665432100
Q ss_pred --CCcCCCC-chhhccCchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceec--cc
Q 004821 83 --PLYWFPS-LDQSKLTNLGHAMEIHGPKFLGAM-YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKCI--LD 156 (728)
Q Consensus 83 --~~~~~~~-~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~--l~ 156 (728)
....... ....++|||++.+.. ++++.+.+ |++ ++|++++|++|.++|.++|++++.+|+.+..++ ++
T Consensus 370 ~~g~~~~~~~~~~~~~~dL~l~~~~-~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l~~~p~~~~~~~~~l~ 443 (1304)
T 2vsq_A 370 ENGFDMVDVHVFEKSNYDLNLMASP-GDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQLIQNPDQPVSTINLVD 443 (1304)
T ss_dssp HHSEEEEEEEECCCCCSSEEEEEEC-SSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHSTTSBGGGCCCCC
T ss_pred cCCceeEeeecccccccCeEEEEec-CCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHhccCccccccccCCCC
Confidence 0000000 013567898887643 56788888 999 999999999999999999999988888777664 33
Q ss_pred CCCCCCCCCCcCCCCcchhhhcccc--cccccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCC
Q 004821 157 RTDKSKHGGTWLPGSVLNVAECCLL--PSSRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKG 233 (728)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~g 233 (728)
..+....+..|+.+..... ..+++ +..+++++||++|+++.++ ++||+||+++++++|++|++. +++|
T Consensus 444 ~~e~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g 514 (1304)
T 2vsq_A 444 DREREFLLTGLNPPAQAHE-TKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKG 514 (1304)
T ss_dssp HHHHHHHHTTTSCCCCCCC-CCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHhcCCCCCCCC-CCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCc
Confidence 3333334567776544332 23444 2446789999999998776 999999999999999999999 9999
Q ss_pred CEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEE
Q 004821 234 DAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVV 313 (728)
Q Consensus 234 d~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (728)
++|+|+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++ .....+
T Consensus 515 ~~V~i~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~---------~~~~~~ 585 (1304)
T 2vsq_A 515 SVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELP---------YTGTTL 585 (1304)
T ss_dssp CEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCC---------CCSEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccC---------CCCcEE
Confidence 99999999999999999999999999999999999999999999999999999875432111110 011111
Q ss_pred EecccCCcccccccccccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccC
Q 004821 314 LPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHID 393 (728)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~ 393 (728)
+.. . . ..... . ...+.....++++|||+|||||||+||||+++|+++.+. .+....++
T Consensus 586 ~~~-~----------~---~~~~~-~------~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~ 643 (1304)
T 2vsq_A 586 FID-D----------Q---TRFEE-Q------ASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMA 643 (1304)
T ss_dssp ESS-C----------G---GGGGS-C------SSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSC
T ss_pred Eec-c----------c---ccccc-c------cCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcC
Confidence 100 0 0 00000 0 011223456899999999999999999999999999876 55667789
Q ss_pred CCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC--CCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCcc
Q 004821 394 MKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG--SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWT 471 (728)
Q Consensus 394 ~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~--~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~ 471 (728)
++++|+++++++++||.+++++|.+|+.|+++++++. ..++..+.++|++++||++.++|++++.|.+... ..++
T Consensus 644 ~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~---~~~~ 720 (1304)
T 2vsq_A 644 FSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE---DWMK 720 (1304)
T ss_dssp CCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS---HHHH
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch---hcCC
Confidence 9999999999999999999999999999999999875 3578899999999999999999999999986532 2367
Q ss_pred ceeeEEeeCCCCCcchHHHHHHhcCCCCeeccccccccccccccCCCC---CCCcccccCCCCCCceEEEECCCCCcCCC
Q 004821 472 KIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML---QPQAFGAFSTATMTTGFVILDELGVPYPD 548 (728)
Q Consensus 472 ~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~~~vld~~~~~~p~ 548 (728)
+||.+++|||++++++.+++.+.+++++++|.||+||++++++..... ......++|+|++|++++|+|++++++|.
T Consensus 721 ~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~ 800 (1304)
T 2vsq_A 721 GLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPF 800 (1304)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCT
T ss_pred CccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCC
Confidence 899999999999999988888887778999999999999765544321 22345689999999999999999999999
Q ss_pred CCCcceeEEE-----ecccCCCcccccccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeec
Q 004821 549 DQPCVGEVGL-----FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623 (728)
Q Consensus 549 g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~ 623 (728)
|+. |||+| +.||++ +++.|+++|+.+|+.+|.+||||||+|+|++||+|+|+||.|||||+||+||+
T Consensus 801 G~~--GEl~i~G~~v~~GY~~------~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie 872 (1304)
T 2vsq_A 801 GAV--GELCISGMGVSKGYVN------RADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIE 872 (1304)
T ss_dssp TCC--EEEEEEETTCCCCBTT------CHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEE
T ss_pred CCc--eEEEEeccccCccccC------CcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeC
Confidence 996 99999 567777 55689999999999889999999999999999999999999999999999999
Q ss_pred hhhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCC
Q 004821 624 SVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPR 703 (728)
Q Consensus 624 ~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~ 703 (728)
|+|||++|. +||+|++|+|++.++..++ +.++|||+.... .+.++++ ++|+++||.||+|+.|+++++||+
T Consensus 873 ~~eIE~~l~-~~p~V~~a~V~~~~~~~~~-~~l~a~vv~~~~---~~~~~l~----~~l~~~Lp~ymvP~~~~~l~~lP~ 943 (1304)
T 2vsq_A 873 LEEIEKQLQ-EYPGVKDAVVVADRHESGD-ASINAYLVNRTQ---LSAEDVK----AHLKKQLPAYMVPQTFTFLDELPL 943 (1304)
T ss_dssp HHHHHHHHH-HSSSCCEEEEEEECCSSSC-CEEEEEEECSSS---SCHHHHH----HHHHHHSCGGGSCSEEEEESCCCC
T ss_pred HHHHHHHHH-hCCCCceEEEEEEecCCCC-EEEEEEEeCCCC---CCHHHHH----HHHHHhChHhhhccEEEEecccCC
Confidence 999999995 9999999999999887776 899999998653 4455554 467789999999999999999999
Q ss_pred CCCchhhHHHHHHHHh
Q 004821 704 TASNKLLRRVLKDQLK 719 (728)
Q Consensus 704 t~~GKvdR~~L~~~~~ 719 (728)
|+||||||++|++...
T Consensus 944 t~~GKidR~~L~~~~~ 959 (1304)
T 2vsq_A 944 TTNGKVNKRLLPKPDQ 959 (1304)
T ss_dssp CSSCSSCCSCCCCCCG
T ss_pred CCCcccCHhhcCCcch
Confidence 9999999999987544
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=9e-86 Score=760.22 Aligned_cols=580 Identities=24% Similarity=0.376 Sum_probs=470.2
Q ss_pred HHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCC-CCCCCCcCCCCcchhhhcccccccccCCCCCceEEEEec
Q 004821 121 FSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKCILDRTDK-SKHGGTWLPGSVLNVAECCLLPSSRLRKEDDSVAVVWRE 199 (728)
Q Consensus 121 ~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~ 199 (728)
|..+.+++++++..+|..+++. ..|..++.+++..... .....+|+.++..|...+++++++ +++||++|+++.+
T Consensus 24 y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~ 99 (652)
T 1pg4_A 24 YETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHL--QENGDRTAIIWEG 99 (652)
T ss_dssp HHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECCTTCCEEEESTTCEECHHHHHTGGGH--HHHTTSEEEEEEC
T ss_pred HHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccccCCCCCEECCCCChhHHHHHHHHHh--ccCCCceEEEEEc
Confidence 4677889999999999999886 5677888777654321 123558999999999888888766 6689999999854
Q ss_pred CCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHh
Q 004821 200 DRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRV 278 (728)
Q Consensus 200 ~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~ 278 (728)
. +++..+++||+||+++++++|++|+++ |++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++
T Consensus 100 ~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~l~~ 177 (652)
T 1pg4_A 100 D--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIID 177 (652)
T ss_dssp S--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHHHHH
T ss_pred C--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHh
Confidence 3 123346899999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCeeEEEeccceeecCccccchHhHHhh---CC----CcEEEEecccCCcccccccccccHHHHhcccCCCCCCCCCCCc
Q 004821 279 SKAKGIFTQDFILRGGRKFPLYSKVAEA---GP----LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPV 351 (728)
Q Consensus 279 ~~~~~il~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (728)
+++++||+++.....++.++....+.+. .+ ..++++........ .......+|+++...... .....
T Consensus 178 ~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~ 251 (652)
T 1pg4_A 178 SSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID-WQEGRDLWWRDLIEKASP-----EHQPE 251 (652)
T ss_dssp HTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC-CCBTTEEEHHHHHTTSCS-----CCCCC
T ss_pred cCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc-ccCCCceeHHHHHhhcCC-----CCCcc
Confidence 9999999999877766666555444332 11 23444432211110 011234567777654321 12223
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEecCchHHHHHH-HHhcccCCCCCCEEEeecccchhhhh-HHHHHHHHhCCEEEEec
Q 004821 352 YRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA-EAWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSGAALALYH 429 (728)
Q Consensus 352 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~l~~G~~lv~~~ 429 (728)
...+++++||+|||||||+||||+++|++++..+. .....++++++|++++++|++|+++. +.++.+|++|+++++++
T Consensus 252 ~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~ 331 (652)
T 1pg4_A 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFE 331 (652)
T ss_dssp CEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEEEC
T ss_pred ccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEEEC
Confidence 45679999999999999999999999999876654 44567899999999999999999998 78999999999999997
Q ss_pred CC---CChhhHHHHHHHcCCeEEecchHHHHHHHccCc--CCCCCccceeeEEeeCCCCCcchHHHHHHhcC--CCCeec
Q 004821 430 GS---PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNC--LQGLDWTKIRSFASTGETSNVDDDLWLASKAY--YKPIIE 502 (728)
Q Consensus 430 ~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~--~~~l~n 502 (728)
+. .++..++++|++++||+++++|++++.|++... ....++++||.+++|||++++++.+++.+.++ .++++|
T Consensus 332 ~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~ 411 (652)
T 1pg4_A 332 GVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVD 411 (652)
T ss_dssp SCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEE
T ss_pred CCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEc
Confidence 53 478899999999999999999999999998654 34567899999999999999999999988764 388999
Q ss_pred cccccccccccccCCC-CCCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEEecccCCCccccc-cccccccccc
Q 004821 503 CCGGTELASSYIQGSM-LQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDRLL-NADHEEVYFS 580 (728)
Q Consensus 503 ~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v~~~y~~~~~~~~-~~~~t~~~f~ 580 (728)
.||+||++.+++.... ..+...+++|+|++|++++|+|++|+++|.|+. |||+|...+.+...+|+ +++.+...|.
T Consensus 412 ~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~~~ 489 (652)
T 1pg4_A 412 TWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQTYF 489 (652)
T ss_dssp EBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHHHH
T ss_pred cccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhhhh
Confidence 9999999876555433 234567899999999999999999999999985 99999432112122222 3333333221
Q ss_pred ccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEE
Q 004821 581 GMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICV 660 (728)
Q Consensus 581 ~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~v 660 (728)
. ...+||+|||+|++|+||+++|+||+|||||++|+||++.|||++|. +||+|.+|+|++.+++..| +.++|||
T Consensus 490 ~----~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a~V 563 (652)
T 1pg4_A 490 S----TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYAYV 563 (652)
T ss_dssp S----SSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEEEE
T ss_pred h----cCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEEEE
Confidence 1 11239999999999999999999999999999999999999999996 9999999999999988777 8999999
Q ss_pred EEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhccc
Q 004821 661 VLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHEL 722 (728)
Q Consensus 661 v~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 722 (728)
+++++.. . .+++.+.|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.+++
T Consensus 564 v~~~~~~-~-~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~~ 623 (652)
T 1pg4_A 564 TLNHGEE-P-SPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDT 623 (652)
T ss_dssp EECTTCC-C-CHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHTC-
T ss_pred EECCCCC-C-CHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhCCC
Confidence 9987754 2 3456778888999999999999999999999999999999999999998753
No 3
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.6e-85 Score=758.31 Aligned_cols=589 Identities=23% Similarity=0.360 Sum_probs=469.8
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCC---C-CCCCCCCcCCCCcchhhhcccccccccCCC
Q 004821 114 YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKCILDRT---D-KSKHGGTWLPGSVLNVAECCLLPSSRLRKE 189 (728)
Q Consensus 114 y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~---~-~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~ 189 (728)
+...+.+|.-+++++++++..||..+++.. ..|.+++.++++.. . ......+|+.++..|...+++++++ +++
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~wf~~~~~n~~~~~l~~~a--~~~ 95 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHA--LKT 95 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSSSCSBCSTTCCBSTTCEECHHHHHTHHHH--TTC
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccccccCCCCCCCcCCCCCccHHHHHHHHHh--ccC
Confidence 455566778889999999999999998862 47889898888654 2 1223368999999999999998776 679
Q ss_pred CCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHH-hh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCC
Q 004821 190 DDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALD-TM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSF 267 (728)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~ 267 (728)
||++|+++.+. +++..+++||+||+++++++|+.|+ ++ |++||+|+|+++|++++++++|||+++|++++|++|.+
T Consensus 96 pd~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~ 173 (663)
T 1ry2_A 96 PNKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGF 173 (663)
T ss_dssp TTSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTS
T ss_pred CCceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCC
Confidence 99999998643 1234468999999999999999999 88 99999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhC---C--CcEEEEecccC-CcccccccccccHHHHhcccCC
Q 004821 268 AAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAG---P--LKAVVLPVIGD-DVGIQLRQQDVSWKDFLSCVDY 341 (728)
Q Consensus 268 p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 341 (728)
+.+++.++++++++++||+++...+.++.++....+.+.. + ..++++..... ... .......+|.++......
T Consensus 174 ~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 252 (663)
T 1ry2_A 174 SSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYKT 252 (663)
T ss_dssp CHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSCS
T ss_pred CHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcCC
Confidence 9999999999999999999998777776666555444432 2 23444432211 000 011234567777653321
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHH-HHhcccCCCCCCEEEeecccchhhhh-HHHHHHH
Q 004821 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA-EAWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSF 419 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~l 419 (728)
..+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|+++. +.++.+|
T Consensus 253 -----~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L 327 (663)
T 1ry2_A 253 -----YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPL 327 (663)
T ss_dssp -----CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHH
T ss_pred -----CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHH
Confidence 1223345689999999999999999999999999876654 44557899999999999999999998 7889999
Q ss_pred HhCCEEEEecCC---CChhhHHHHHHHcCCeEEecchHHHHHHHccCc--CCCCCccceeeEEeeCCCCCcchHHHHHHh
Q 004821 420 LSGAALALYHGS---PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNC--LQGLDWTKIRSFASTGETSNVDDDLWLASK 494 (728)
Q Consensus 420 ~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~ 494 (728)
+.|++++++++. .++..++++|++++||+++++|++++.|.+... ....++++||.+++|||++++++.+++.+.
T Consensus 328 ~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~ 407 (663)
T 1ry2_A 328 LYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEK 407 (663)
T ss_dssp HHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHT
T ss_pred HhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHH
Confidence 999999999753 478899999999999999999999999988654 345678999999999999999999999887
Q ss_pred cC--CCCeeccccccccccccccCCC--CCCCcccccCCCCCCceEEEECC-CCCcCCC-CCCcceeEEEecccCCCccc
Q 004821 495 AY--YKPIIECCGGTELASSYIQGSM--LQPQAFGAFSTATMTTGFVILDE-LGVPYPD-DQPCVGEVGLFPLYLGATDR 568 (728)
Q Consensus 495 ~~--~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~-g~~~iGel~v~~~y~~~~~~ 568 (728)
++ .++++|.||+||++.+++.... ..+...+++|+|++|++++|+|+ +|+++|. |+. |||+|...+.+...+
T Consensus 408 ~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~g 485 (663)
T 1ry2_A 408 IGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFART 485 (663)
T ss_dssp TSCSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCE
T ss_pred hCCCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcc
Confidence 64 3889999999999876555433 23456789999999999999998 8999988 875 999994321111112
Q ss_pred cc-ccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeec
Q 004821 569 LL-NADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVS 647 (728)
Q Consensus 569 ~~-~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~ 647 (728)
|+ +++.+.+.|... .+| ||+|||+|++|+||+++|+||.|||||++|+||++.|||++|. +||+|.+|+|++.+
T Consensus 486 y~~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~ 560 (663)
T 1ry2_A 486 IWKNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFN 560 (663)
T ss_dssp ETTCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCC
T ss_pred cccChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEe
Confidence 22 333444333211 123 9999999999999999999999999999999999999999996 99999999999999
Q ss_pred CCCCCceEEEEEEEEcCCCCCC-C-hH---HHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcc
Q 004821 648 PAGGGPEVLVICVVLKKGFTSQ-P-VD---KLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 721 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~-~-~~---~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 721 (728)
++..| +.++|||+++++.... . .+ ++.+.|+++|+++||+||+|+.|+++++||+|+||||+|++|++++.++
T Consensus 561 ~~~~g-~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~~ 638 (663)
T 1ry2_A 561 DDLTG-QAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAGE 638 (663)
T ss_dssp CCTTS-CCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC--
T ss_pred cCCCC-eEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcCC
Confidence 88777 8999999998753200 1 11 4677888899999999999999999999999999999999999988764
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=8.6e-81 Score=708.95 Aligned_cols=552 Identities=18% Similarity=0.195 Sum_probs=413.4
Q ss_pred HHhhCHHHHHHHHHhhcccc-eeccceecccCCCCCCCCCCcCCCCcchhhhcccccccccCCCCCceEEEEecCCCCCC
Q 004821 127 FTVEHPEAYWEIVLKEISVK-FHEAPKCILDRTDKSKHGGTWLPGSVLNVAECCLLPSSRLRKEDDSVAVVWREDRCDDS 205 (728)
Q Consensus 127 ~ti~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~Al~~~~~~~~~~ 205 (728)
..|+++.+|+..+++.+... ....+.+.. ....|......|....++++++ +++||++|+++.+. .+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~n~~~~~l~~~a--~~~pd~~Al~~~~~---~g 82 (580)
T 3etc_A 15 GHIDDDDKHMTSLLSQFVSKTDFESYEDFQ-------ENFKILVPENFNFAYDVVDVYA--RDSPEKLAMIWCDD---YG 82 (580)
T ss_dssp -----------CCGGGGBSCSCCSSHHHHH-------HHCCBCCCSSCCHHHHTHHHHH--HHCTTCEEEEEEES---SS
T ss_pred CCcCchHHHHHHHHHHHhhcccccCHHHHH-------hcCCCCCcccchHHHHHHHHHH--hhCCCCEEEEEEcC---CC
Confidence 45777788877777765311 111111111 1235666666777767776665 78999999998543 13
Q ss_pred CceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEE
Q 004821 206 SVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGI 284 (728)
Q Consensus 206 ~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~i 284 (728)
..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+|+|++++|++|.++.+++.+++++++++++
T Consensus 83 ~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~i 162 (580)
T 3etc_A 83 NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMI 162 (580)
T ss_dssp CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEE
T ss_pred CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEE
Confidence 346899999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred EeccceeecCccccchHhHHhhCC---CcEEEEecccCCcccccccccccHHHHhcccCCCCCCCCCCCccCCCCCeEEE
Q 004821 285 FTQDFILRGGRKFPLYSKVAEAGP---LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINI 361 (728)
Q Consensus 285 l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i 361 (728)
|++.... ............+ ...+.+... ...+..++.+........ ...........++|++||
T Consensus 163 i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i 230 (580)
T 3etc_A 163 VCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD-------VLEGWIDFRKELEESSPI-FERPTGEVSTKNEDICLV 230 (580)
T ss_dssp EEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS-------CCTTCEEHHHHHHHSCSC-CCCCCGGGSCCTTSEEEE
T ss_pred EEecchh----HHHHHHHHhhhCCCcceEEEEeCCc-------cccccccHHHHHhhCCcc-cccCccccCCCCCCcEEE
Confidence 9987421 0011122222212 223333211 112344566555443320 000111124578999999
Q ss_pred EeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHH-HHHHHHhCCEEEEec-CCCChhhHHH
Q 004821 362 LFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII-LFSSFLSGAALALYH-GSPLERSFGK 439 (728)
Q Consensus 362 ~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-i~~~l~~G~~lv~~~-~~~~~~~l~~ 439 (728)
+|||||||+||||+++|++++..+......+++.+++++++.++++|+.+++. ++.++..|+++++.+ ...++..+++
T Consensus 231 ~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~ 310 (580)
T 3etc_A 231 YFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLE 310 (580)
T ss_dssp EEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEECCCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHH
T ss_pred EEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEeCChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999999888877777788999999999999999999864 788999999999885 4668999999
Q ss_pred HHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCeeccccccccccccccCCCC
Q 004821 440 FVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSML 519 (728)
Q Consensus 440 ~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~ 519 (728)
.|+++++|++.++|++++.|++.. ....++++||.+++|||++++++.+++.+.+ +++++|.||+||+++.++... .
T Consensus 311 ~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~ 387 (580)
T 3etc_A 311 KASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGEPLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-W 387 (580)
T ss_dssp HHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSSCCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-T
T ss_pred HHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccCCCCHHHHHHHHHHh-CCeEecccccccccceeecCC-C
Confidence 999999999999999999998863 3456789999999999999999999988764 689999999999987554433 3
Q ss_pred CCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEEec------ccCCCcccccccccccccccccccCCCccceec
Q 004821 520 QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFP------LYLGATDRLLNADHEEVYFSGMPIYKGMHLRRH 593 (728)
Q Consensus 520 ~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v~~------~y~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrT 593 (728)
.....+++|+|++|++++|+|++|+++|.|+. |||+|.. +.+. +|+.+++.|++.|.. | ||+|
T Consensus 388 ~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~~~~g~~~~~~~--gY~~~p~~t~~~f~~-----g--wy~T 456 (580)
T 3etc_A 388 MEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVINTMEGKPVGLFV--HYGKDPERTEETWHD-----G--YYHT 456 (580)
T ss_dssp SCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEECTTCCCTTCCC--EETTCHHHHHHHEET-----T--EEEE
T ss_pred CCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEecCCCCCCeeec--cccCCHhHHHhhcCC-----C--EEec
Confidence 34567899999999999999999999999996 9999942 1111 223356678877752 3 9999
Q ss_pred CCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEEEEcCCCCCCChHH
Q 004821 594 GDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDK 673 (728)
Q Consensus 594 GDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~ 673 (728)
||+|++|+||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.++|+|++.++.. ..++
T Consensus 457 GDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~V~~a~Vvg~~~~~~g-~~~~a~vv~~~~~~--~~~~ 532 (580)
T 3etc_A 457 GDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHPAVLECAITGVPDPVRG-QVIKATIVLTKDYT--PSDS 532 (580)
T ss_dssp EEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEEEEEECTTCC--CCHH
T ss_pred CcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeeccCCC-cEEEEEEEECCCCC--CCHH
Confidence 999999999999999999999999999999999999995 9999999999999998888 89999999988754 3356
Q ss_pred HHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhc
Q 004821 674 LKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKH 720 (728)
Q Consensus 674 l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 720 (728)
+.+.|++++++.||+||+|+.|+++++||+|+||||+|++|++++.+
T Consensus 533 ~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 533 LKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp HHHHHHHHHHHHSCGGGCCSEEEEECC--------------------
T ss_pred HHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhhc
Confidence 77788889999999999999999999999999999999999998764
No 5
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=2.4e-81 Score=717.41 Aligned_cols=468 Identities=19% Similarity=0.172 Sum_probs=388.4
Q ss_pred cccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004821 184 SRLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVS 262 (728)
Q Consensus 184 ~~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (728)
.+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|++|||
T Consensus 35 ~~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailkaGa~~vp 106 (620)
T 4dg8_A 35 EMAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILLSGHHYLY 106 (620)
T ss_dssp HHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEe
Confidence 35689999999999877 999999999999999999999 999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCC
Q 004821 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (728)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (728)
|||.+|.+++.+++++++++++|+++......... ... .+... ..
T Consensus 107 ld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~------------~~~------------------~~~~~----~~- 151 (620)
T 4dg8_A 107 IDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGL------------PCV------------------PVRHL----PA- 151 (620)
T ss_dssp CCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTS------------CEE------------------EGGGC----CC-
T ss_pred eCccChHHHHHHHHHhCCCcEEEecCcccccccCC------------cee------------------eeccC----Cc-
Confidence 99999999999999999999999765422110000 000 00000 00
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhC
Q 004821 343 PGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSG 422 (728)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G 422 (728)
...........++++|||+|||||||+||||+++|+++.+.+.+ ...+++.++|++++++|++|+++++++|.+|+.|
T Consensus 152 -~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 229 (620)
T 4dg8_A 152 -APASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNG 229 (620)
T ss_dssp -CCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred -CCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcC
Confidence 01111222346899999999999999999999999999887765 5678899999999999999999999999999999
Q ss_pred CEEEEecC-CCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCee
Q 004821 423 AALALYHG-SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPII 501 (728)
Q Consensus 423 ~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (728)
+++++.+. ..++..++++|+++++|++.++|++++.|++... .++++||.+++|||++++++.+++...+++++++
T Consensus 230 ~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~---~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~ 306 (620)
T 4dg8_A 230 GCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP---DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLV 306 (620)
T ss_dssp CEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEE
T ss_pred CEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh---hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEE
Confidence 99999753 4588999999999999999999999999987532 3478999999999999999888888787889999
Q ss_pred ccccccccccccccCCC---CCCCcccccCCCCCCceEEEECCCCCc-CCCCCCcceeEEE-----ecccCCCccccccc
Q 004821 502 ECCGGTELASSYIQGSM---LQPQAFGAFSTATMTTGFVILDELGVP-YPDDQPCVGEVGL-----FPLYLGATDRLLNA 572 (728)
Q Consensus 502 n~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~-~p~g~~~iGel~v-----~~~y~~~~~~~~~~ 572 (728)
|.||+||++++++.... .......++|+|++|++++|+|+++++ +|.|+. |||+| +.||++ ++
T Consensus 307 n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~GY~~------~p 378 (620)
T 4dg8_A 307 NGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQGYRN------DA 378 (620)
T ss_dssp EEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSEETT------CH
T ss_pred eeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccccCC------Ch
Confidence 99999999876543322 122345789999999999999999988 789986 99998 556776 56
Q ss_pred ccccccccccccCCCc--cceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCC
Q 004821 573 DHEEVYFSGMPIYKGM--HLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAG 650 (728)
Q Consensus 573 ~~t~~~f~~~p~~~g~--~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~ 650 (728)
+.|++.|..+|+ +|. +||||||+|++++||+|+|+||.|||||++|+||+|+|||++|. +||+|.+|+|++.+++.
T Consensus 379 ~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~ 456 (620)
T 4dg8_A 379 ARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNG 456 (620)
T ss_dssp HHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETT
T ss_pred hhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCC
Confidence 689999998884 344 79999999999999999999999999999999999999999996 99999999999988764
Q ss_pred CCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhccc
Q 004821 651 GGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHEL 722 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 722 (728)
. ..++++++..... ++ +.|+++||.||+|+.|+++++||+|+||||||++|++.+.+..
T Consensus 457 ~--~~lv~~~~~~~~~-------~~----~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~~~ 515 (620)
T 4dg8_A 457 V--KQLLCAWTGKADA-------SP----QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEEPL 515 (620)
T ss_dssp E--EEEEEEEEECTTC-------CC----HHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCSCC
T ss_pred c--eEEEEEEecChHH-------HH----HHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccccc
Confidence 3 5677776654321 12 2455789999999999999999999999999999998876543
No 6
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=2.5e-80 Score=700.47 Aligned_cols=489 Identities=20% Similarity=0.248 Sum_probs=408.1
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++...+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 31 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 31 NLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp TGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCEEecc
Confidence 45789999999986321 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
+|.++.+++.+++++++++++|++.... .............++.++.. ..+...+.++......
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-- 168 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYY------EKVKDFARESDVKVMCVDSA--------PDGCLHFSELTQADEN-- 168 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGT------HHHHHHHHHHTCEEEESSCC--------CTTCEETHHHHTSCGG--
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHH------HHHHHHHhhcCceEEEecCC--------CCCccCHHHHhhcccc--
Confidence 9999999999999999999999987532 11222221122222222111 1223445555443221
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhc----ccCCCCCCEEEeecccchhhhh-HHHHHH
Q 004821 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG----HIDMKVGDVYCWPTNLGWVMGP-IILFSS 418 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~i~~~ 418 (728)
..+.....+++++||+|||||||+||||+++|+++++.+.+... .+++.++|++++.+|++|++++ ..++.+
T Consensus 169 ---~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~ 245 (536)
T 3ni2_A 169 ---EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCG 245 (536)
T ss_dssp ---GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHHHTHHHH
T ss_pred ---ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHHHHHHHH
Confidence 12233457899999999999999999999999999888776543 4578899999999999999998 557899
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCC
Q 004821 419 FLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYK 498 (728)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~ 498 (728)
|..|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.++++
T Consensus 246 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~ 324 (536)
T 3ni2_A 246 LRVGAPILIMP-KFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVRAKFPQA 324 (536)
T ss_dssp HHHTCCEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHHHHCTTS
T ss_pred HhcCCEEEEcC-CCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHHHHCCCC
Confidence 99999999987 47889999999999999999999999999988766667789999999999999999999999998889
Q ss_pred CeeccccccccccccccCC----CCCCCcccccCCCCCCceEEEEC-CCCCcCCCCCCcceeEEE-----ecccCCCccc
Q 004821 499 PIIECCGGTELASSYIQGS----MLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDR 568 (728)
Q Consensus 499 ~l~n~YG~TE~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~g~~~iGel~v-----~~~y~~~~~~ 568 (728)
+++|.||+||++..++.+. .......+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++
T Consensus 325 ~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~---- 398 (536)
T 3ni2_A 325 RLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKGYLN---- 398 (536)
T ss_dssp EEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchhhcC----
Confidence 9999999999986544331 12234567899999999999999 66999999996 99999 456666
Q ss_pred ccccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecC
Q 004821 569 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSP 648 (728)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (728)
+++.|++.|..+ +||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 399 --~p~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 469 (536)
T 3ni2_A 399 --DPEATSRTIDKE------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLKD 469 (536)
T ss_dssp --CHHHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEE
T ss_pred --ChhHHHhhccCC------CceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeeec
Confidence 555777777532 39999999999999999999999999999999999999999995 999999999999998
Q ss_pred CCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhc
Q 004821 649 AGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKH 720 (728)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 720 (728)
+..+ +.++|||+..++.. .+.+++++ +|+++||.||+|+.|+++++||+|+||||||++|++++++
T Consensus 470 ~~~g-~~~~a~vv~~~~~~-~~~~~l~~----~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 470 EDAG-EVPVAFVVKSEKSQ-ATEDEIKQ----YISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp TTTE-EEEEEEEEECTTCC-CCHHHHHH----HHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred CCCC-ceeEEEEEecCCCC-CCHHHHHH----HHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 8887 89999999987665 56555554 6778999999999999999999999999999999987753
No 7
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=7.7e-81 Score=706.76 Aligned_cols=502 Identities=18% Similarity=0.185 Sum_probs=377.7
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.+.....+..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++|||
T Consensus 28 ~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 28 AAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp HHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHhCCEEEcc
Confidence 457899999999987433333445999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
||.+|.+++.+++++++++++|+++... ..............+++.. ....++.++......
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-- 169 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLY------ENFKPVLEKTGVERVFVVG----------GEVNSLSEVMDSGSE-- 169 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGH------HHHHHHHTTSCCCEEEEET----------CSSSCHHHHHHHSCS--
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHH------HHHHHHHhhCCCcEEEEeC----------CCCcCHHHHHhcCcc--
Confidence 9999999999999999999999997532 1122222222222222211 123456666554332
Q ss_pred CCCCCCCccCC-CCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhC
Q 004821 344 GPKYYPPVYRP-VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSG 422 (728)
Q Consensus 344 ~~~~~~~~~~~-~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G 422 (728)
........ ++++|||+|||||||+||||+++|+++.+.+.+....+++.++|++++.+|++|++++..++.++..|
T Consensus 170 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~l~~G 246 (549)
T 3g7s_A 170 ---DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLVNLMVTVG 246 (549)
T ss_dssp ---CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHHTTHHHHC
T ss_pred ---ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHHHHHHhcC
Confidence 11122223 48999999999999999999999999999999888889999999999999999999987788999999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCC--CCccceeeEEeeCCCCCcchHHHHHHh----cC
Q 004821 423 AALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQG--LDWTKIRSFASTGETSNVDDDLWLASK----AY 496 (728)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~--~~l~~Lr~v~~~Ge~l~~~~~~~~~~~----~~ 496 (728)
+++++.+ ..++..+++.|+++++|++.++|++++.|++...... .++++||.+++||+++++++.+++.+. +.
T Consensus 247 ~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~ 325 (549)
T 3g7s_A 247 NEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCN 325 (549)
T ss_dssp CEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSS
T ss_pred ceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHHHHHhhcC
Confidence 9999987 5788999999999999999999999999987644332 568899999999999999999888776 32
Q ss_pred --CCCeeccccccccccccccCCCCCCCcccccCCCCCCceEEEEC-CCCCcCCCCCCcceeEEE-----ecccCCCccc
Q 004821 497 --YKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDR 568 (728)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~g~~~iGel~v-----~~~y~~~~~~ 568 (728)
.++++|.||+||++.+++..........+++|+|+++++++|+| ++|+++|.|+. |||+| +.||++
T Consensus 326 ~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~---- 399 (549)
T 3g7s_A 326 NPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKGYWK---- 399 (549)
T ss_dssp CTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSEETT----
T ss_pred CccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhhhCC----
Confidence 37899999999999876665554445678899999999999999 88999999996 99999 456666
Q ss_pred ccccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecC
Q 004821 569 LLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSP 648 (728)
Q Consensus 569 ~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~ 648 (728)
+++.|++.|..++ +|.+||+|||+|++|+||+|+|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.++
T Consensus 400 --~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~ 474 (549)
T 3g7s_A 400 --REKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGKPD 474 (549)
T ss_dssp --CTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECCCC
T ss_pred --ChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEeeEc
Confidence 5567888885433 47789999999999999999999999999999999999999999995 999999999999998
Q ss_pred CCCCceEEEEEEEEcCCC--CCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcccccC
Q 004821 649 AGGGPEVLVICVVLKKGF--TSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSVR 725 (728)
Q Consensus 649 ~~~g~~~l~a~vv~~~~~--~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~ 725 (728)
+..+ +.++|||+++++. . .+.++++ ++|+++||.||+|+.|+++++||+|+||||||++|++.+.+.-.++
T Consensus 475 ~~~g-~~~~a~vv~~~~~~~~-~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~~ 547 (549)
T 3g7s_A 475 EEAG-EVPKAFIVLKPEYRGK-VDEEDII----EWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHHH 547 (549)
T ss_dssp -------CEEEEEECSTTTTS-CCHHHHH----HHHHTTCC-----CCCCEEEECC-----------------------
T ss_pred cccC-ceEEEEEEECCCccCc-CCHHHHH----HHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhcccccc
Confidence 8777 8999999998762 3 4555554 4677999999999999999999999999999999999987765443
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.8e-79 Score=687.60 Aligned_cols=485 Identities=21% Similarity=0.219 Sum_probs=402.7
Q ss_pred cCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004821 186 LRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA 264 (728)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (728)
++++|+++|+...... .+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|||
T Consensus 10 a~~~p~~~a~~~~~~~-----~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl~ 84 (503)
T 4fuq_A 10 FDKLDDPHKLAIETAA-----GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGGVYLPLN 84 (503)
T ss_dssp HSCCSCTTSEEEEETT-----CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEECC
T ss_pred HHhCCCCceEEEecCC-----CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCcEEEecC
Confidence 3778888888753210 03899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCCC
Q 004821 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPG 344 (728)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (728)
|.+|.+++.+++++++++++|++..... ....+.......+..+... ....+.+......
T Consensus 85 ~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~---- 144 (503)
T 4fuq_A 85 TAYTLHELDYFITDAEPKIVVCDPSKRD------GIAAIAAKVGATVETLGPD----------GRGSLTDAAAGAS---- 144 (503)
T ss_dssp TTCCHHHHHHHHHHHCCSEEEECGGGTT------TTHHHHHHHTCEEEECCTT----------SCSHHHHHHHTSC----
T ss_pred CCCCHHHHHHHHHhcCCcEEEECchhhH------HHHHHHhhcCceEEEecCC----------cccccchhhhcCC----
Confidence 9999999999999999999999875421 1222222222222222110 1111222221111
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhh-HHHHHHHHhCC
Q 004821 345 PKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSGA 423 (728)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~l~~G~ 423 (728)
.........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|++++ ..++.+++.|+
T Consensus 145 -~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l~~g~ 223 (503)
T 4fuq_A 145 -EAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARG 223 (503)
T ss_dssp -SCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHHHTTC
T ss_pred -CCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHHhCC
Confidence 1122334568999999999999999999999999999999998889999999999999999999997 45778999999
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCeecc
Q 004821 424 ALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIEC 503 (728)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (728)
++++.+ ..++..+++.++ ++|++.++|+++..|++.......++++||.+++|||++++++.+++...+ +++++|.
T Consensus 224 ~~~~~~-~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~-~~~~~~~ 299 (503)
T 4fuq_A 224 SMIFLP-KFDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKT-GHAVLER 299 (503)
T ss_dssp EEEECS-SCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHH-SCCEEEC
T ss_pred EEEEcC-CCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHh-CCCccce
Confidence 999987 578899999998 899999999999999988766667788999999999999999999888775 5789999
Q ss_pred ccccccccccccCCCCCCCcccccCCCCCCceEEEEC-CCCCcCCCCCCcceeEEE-----ecccCCCcccccccccccc
Q 004821 504 CGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEV 577 (728)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (728)
||+||++..++ .........+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++ +++.|++
T Consensus 300 YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~t~~ 370 (503)
T 4fuq_A 300 YGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKGYWR------MPEKTKS 370 (503)
T ss_dssp CEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCCBTT------CHHHHHH
T ss_pred EcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhhhcC------ChhhhHh
Confidence 99999987543 3333445567899999999999999 88999999996 99999 456666 5567888
Q ss_pred cccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEE
Q 004821 578 YFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLV 657 (728)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~ 657 (728)
.|..++ ||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 371 ~f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 442 (503)
T 4fuq_A 371 EFRDDG------FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVT 442 (503)
T ss_dssp TBCTTS------CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred hhCCCC------CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeE
Confidence 886433 9999999999999999999999999999999999999999995 9999999999999988887 8999
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhccc
Q 004821 658 ICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHEL 722 (728)
Q Consensus 658 a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 722 (728)
++|+.+++.. .+.+++++ +++++||.||+|+.|+++++||+|+|||+||++|++++.+.+
T Consensus 443 a~v~~~~~~~-~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~ 502 (503)
T 4fuq_A 443 AVVVRDKGAT-IDEAQVLH----GLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDIY 502 (503)
T ss_dssp EEEEECTTCC-CCHHHHHH----HHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTTT
T ss_pred EEEEeCCCCC-CCHHHHHH----HHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHhh
Confidence 9999988765 66555554 677899999999999999999999999999999999987654
No 9
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=3.2e-79 Score=687.65 Aligned_cols=482 Identities=19% Similarity=0.196 Sum_probs=414.6
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh--cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM--FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVS 262 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (728)
+++++||++|+++.++ ++||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|
T Consensus 10 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~G~~~vp 81 (511)
T 3e7w_A 10 HAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIP 81 (511)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHhCCEEEe
Confidence 4578999999998776 999999999999999999885 789999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCC
Q 004821 263 IADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (728)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (728)
++|.++.+++.+++++++++++|+++...... ... ......+.++......
T Consensus 82 l~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~------------~~~----------------~~~~~~~~~~~~~~~~- 132 (511)
T 3e7w_A 82 VDLSIPSERIAKIIESSGAELLIHAAGLSIDA------------VGQ----------------QIQTVSAEELLENEGG- 132 (511)
T ss_dssp EETTSCHHHHHHHHHHHTCCEEEESSSCCTTC------------CCC----------------SSCEEEHHHHHTSCSC-
T ss_pred cCCCChHHHHHHHHHhCCCCEEEecccccchh------------ccc----------------ccceecHhhhhccccC-
Confidence 99999999999999999999999976421000 000 0112234444433221
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhC
Q 004821 343 PGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSG 422 (728)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G 422 (728)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|..|
T Consensus 133 ---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 209 (511)
T 3e7w_A 133 ---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSG 209 (511)
T ss_dssp ---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTT
T ss_pred ---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHHHhcC
Confidence 11122335678999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCe
Q 004821 423 AALALYHGS--PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPI 500 (728)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l 500 (728)
+++++.+.. .++..+++.|+++++|++.++|++++.|+.........++++|.+++|||++++++.+++.+.++++++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i 289 (511)
T 3e7w_A 210 GTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFPKAKI 289 (511)
T ss_dssp CEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEE
T ss_pred CEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCCCcEE
Confidence 999998643 478899999999999999999999999998776666778999999999999999999999999888999
Q ss_pred eccccccccccccccCCCC----CCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCcccccc
Q 004821 501 IECCGGTELASSYIQGSML----QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLN 571 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~ 571 (728)
+|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+| +.||++ +
T Consensus 290 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~ 361 (511)
T 3e7w_A 290 FNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRGYLG------E 361 (511)
T ss_dssp EECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCCBTT------C
T ss_pred EeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChhhCC------C
Confidence 9999999998765443221 22345679999999999999999999999996 99999 346665 5
Q ss_pred cccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCC
Q 004821 572 ADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGG 651 (728)
Q Consensus 572 ~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~ 651 (728)
++.|++.|... +|.+||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..
T Consensus 362 ~~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~ 436 (511)
T 3e7w_A 362 PELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGT 436 (511)
T ss_dssp HHHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSS
T ss_pred cccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCC
Confidence 56777778653 36678999999999 69999999999999999999999999999996 999999999999988777
Q ss_pred CceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcc
Q 004821 652 GPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 721 (728)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 721 (728)
+ +.++|+|++.++.. .+..++.+.|+++|+++||.||+|..|+++++||+|+||||||++|++.+...
T Consensus 437 ~-~~~~a~vv~~~~~~-~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 437 V-EYLIAAIVPEEHEF-EKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp C-CEEEEEEEECCCCC-SSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHH
T ss_pred c-eEEEEEEEeccccc-cchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhh
Confidence 7 89999999988754 45667788899999999999999999999999999999999999999988754
No 10
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.4e-79 Score=694.43 Aligned_cols=491 Identities=18% Similarity=0.209 Sum_probs=404.1
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||+
T Consensus 34 ~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 105 (539)
T 1mdb_A 34 RAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFA 105 (539)
T ss_dssp HHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCeEEecC
Confidence 3478999999998766 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCC-cEEEEecccCCcccccccccccHHHHhcccCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL-KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (728)
+|.++.+++.+++++++++++|+++.... .........+....+. ..+++.... ..+.++......
T Consensus 106 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~- 172 (539)
T 1mdb_A 106 LPSHRSSEITYFCEFAEAAAYIIPDAYSG-FDYRSLARQVQSKLPTLKNIIVAGEA-----------EEFLPLEDLHTE- 172 (539)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEESEETT-EEHHHHHHHHHHHCTTCCCEEEESCC-----------TTSEEGGGCCCC-
T ss_pred CCCCCHHHHHHHHHhCCCCEEEecccccc-ccHHHHHHHHHhcCCCccEEEEcCCc-----------cchhhhhhcccc-
Confidence 99999999999999999999999875310 0000111222222222 122221100 011112111111
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhH--HHHHHHH
Q 004821 343 PGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPI--ILFSSFL 420 (728)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~i~~~l~ 420 (728)
........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|++++. .++.+|+
T Consensus 173 ----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 248 (539)
T 1mdb_A 173 ----PVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLY 248 (539)
T ss_dssp ----CCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ----ccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHHHHHHHHH
Confidence 1112345679999999999999999999999999999998888889999999999999999999885 6899999
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCe
Q 004821 421 SGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPI 500 (728)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l 500 (728)
.|+++++.+ ..++..+++.|+++++|++.++|++++.|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 249 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~-~~~~ 326 (539)
T 1mdb_A 249 AGGRVVLSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVF-GCTL 326 (539)
T ss_dssp TTCEEEECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHHHT-CSEE
T ss_pred hCCEEEECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999986 46889999999999999999999999999876554556789999999999999999999888775 6889
Q ss_pred eccccccccccccccCCCCCCCcccccCCCCCCc-eEEEECCCCCcCCCCCCcceeEEE-----ecccCCCccccccccc
Q 004821 501 IECCGGTELASSYIQGSMLQPQAFGAFSTATMTT-GFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADH 574 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~ 574 (728)
+|.||+||+++.++..........+++|+|+++. +++|+|++|+++|.|+. |||+| +.||++ +++.
T Consensus 327 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~ 398 (539)
T 1mdb_A 327 QQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRGYYK------AEEH 398 (539)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSSCTT------CHHH
T ss_pred EEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchhhcC------Chhh
Confidence 9999999976543322211122456899999765 79999999999999996 99999 446666 5557
Q ss_pred ccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCce
Q 004821 575 EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPE 654 (728)
Q Consensus 575 t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~ 654 (728)
|++.|..++ ||+|||+|++++||+|+|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +
T Consensus 399 t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~ 470 (539)
T 1mdb_A 399 NAASFTEDG------FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG-E 470 (539)
T ss_dssp HHHHBCTTS------CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-E
T ss_pred hhhhccCCC------CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC-c
Confidence 788886432 9999999999999999999999999999999999999999995 9999999999999988777 8
Q ss_pred EEEEEEEEcCCCCCCChHHHHHHHHHHHHHh-cCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhccccc
Q 004821 655 VLVICVVLKKGFTSQPVDKLKMIFSKAIQRN-LNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSV 724 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 724 (728)
.++|||+++.. . .+.+++++ +++++ ||.||+|+.|+++++||+|+|||+||++|++++.+++++
T Consensus 471 ~~~a~vv~~~~-~-~~~~~l~~----~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 535 (539)
T 1mdb_A 471 RSCVFIIPRDE-A-PKAAELKA----FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLA 535 (539)
T ss_dssp EEEEEEEESSS-C-CCHHHHHH----HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHHHHHT
T ss_pred eEEEEEEECCC-C-CCHHHHHH----HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHHHHhc
Confidence 99999998743 2 45555555 56676 999999999999999999999999999999999887764
No 11
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.3e-79 Score=691.28 Aligned_cols=487 Identities=18% Similarity=0.209 Sum_probs=409.5
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.++ ++||+||+++++++|++|.+. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 10 ~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G~v~vpl 81 (512)
T 3fce_A 10 WAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYIPV 81 (512)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEee
Confidence 3478999999999876 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
+|.++.+++.+++++++++++|++....... .. ..++. ...+.++......
T Consensus 82 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~------------~~--~~~~~-------------~~~~~~~~~~~~~-- 132 (512)
T 3fce_A 82 DLSIPADRVQRIAENSGAKLLLSATAVTVTD------------LP--VRIVS-------------EDNLKDIFFTHKG-- 132 (512)
T ss_dssp ETTSCHHHHHHHHHHSCCCEEEESSCCCSSC------------CS--SEEEE-------------THHHHHHHHHTTT--
T ss_pred CCCCcHHHHHHHHHhcCCCEEEecCcccccc------------cc--cceec-------------hhhhhhhcccccc--
Confidence 9999999999999999999999986421100 00 00000 0012222111111
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCC
Q 004821 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGA 423 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~ 423 (728)
....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+++.|+
T Consensus 133 -~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 211 (512)
T 3fce_A 133 -NTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGG 211 (512)
T ss_dssp -CCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTC
T ss_pred -cCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCC
Confidence 1112233456899999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEEecCC--CChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCee
Q 004821 424 ALALYHGS--PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPII 501 (728)
Q Consensus 424 ~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (728)
++++.+.. .++..+++.|+++++|++.++|++++.++........++++||.+++|||++++++.+++.+.+++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~ 291 (512)
T 3fce_A 212 TLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIM 291 (512)
T ss_dssp EEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEE
T ss_pred EEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCCCEEE
Confidence 99998743 4788999999999999999999999999887766677789999999999999999999999998889999
Q ss_pred ccccccccccccccCCCC----CCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCccccccc
Q 004821 502 ECCGGTELASSYIQGSML----QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNA 572 (728)
Q Consensus 502 n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~ 572 (728)
|.||+||+++.++..... ......++|+|+++++++|+|++|+++|.|+. |||+| +.||++ ++
T Consensus 292 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~~ 363 (512)
T 3fce_A 292 NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVGYLG------SP 363 (512)
T ss_dssp EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSCBTT------CH
T ss_pred eCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChhhcC------Cc
Confidence 999999998765443221 11245689999999999999999999999996 99999 346665 55
Q ss_pred ccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCC
Q 004821 573 DHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGG 652 (728)
Q Consensus 573 ~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g 652 (728)
+.|++.|.. .+|++||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+
T Consensus 364 ~~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~ 438 (512)
T 3fce_A 364 ELTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY 438 (512)
T ss_dssp HHHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE
T ss_pred hhhhhcccc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc
Confidence 577777753 236679999999999 89999999999999999999999999999995 9999999999999887777
Q ss_pred ceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhccccc
Q 004821 653 PEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSV 724 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 724 (728)
+.++|+|++.++.. .+..++.+.++++|+++||.||+|..|+++++||+|+||||||++|++.+.++-+.
T Consensus 439 -~~~~a~vv~~~~~~-~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~~ 508 (512)
T 3fce_A 439 -DYLLAVVVPGEHSF-EKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEHH 508 (512)
T ss_dssp -EEEEEEEEECSCCC-SSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC----
T ss_pred -eEEEEEEecCCccc-cchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhcccc
Confidence 88999999987654 45566778899999999999999999999999999999999999999998775443
No 12
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.7e-79 Score=690.20 Aligned_cols=483 Identities=22% Similarity=0.209 Sum_probs=400.7
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.+. ..++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++|||
T Consensus 25 ~a~~~p~~~A~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 98 (517)
T 3r44_A 25 RATVSPRLQAYVEPST------DVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAAKLGAVAVPI 98 (517)
T ss_dssp HHHHSTTSEEEEEGGG------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCCeEEEeCCc------CceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 4578999999998654 24899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCC--cEEEEecccCCcccccccccccHHHHhcccCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL--KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (728)
||.+|.+++.+++++++++++|++.... +....+...... ..+.+. ....+.+.......
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 160 (517)
T 3r44_A 99 NTRLAAPEVSFILSDSGSKVVIYGAPSA------PVIDAIRAQADPPGTVTDWI------------GADSLAERLRSAAA 160 (517)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHHHSSSCCTTCCEEE------------EHHHHHHHHHHCCC
T ss_pred CcccCHHHHHHHHHhcCceEEEECCchH------HHHHHHHhccCCccEEEEcc------------CcccHHHHhhccCc
Confidence 9999999999999999999999987532 111222211111 111110 01123333332221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHh
Q 004821 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLS 421 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~ 421 (728)
..+.....+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+++.
T Consensus 161 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~~ 235 (517)
T 3r44_A 161 -----DEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIFSAMR 235 (517)
T ss_dssp -----CCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHHHHHHHHHH
T ss_pred -----CCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHhc
Confidence 122334578999999999999999999999999999999988888999999999999999999999876667679
Q ss_pred CCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCee
Q 004821 422 GAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPII 501 (728)
Q Consensus 422 G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~ 501 (728)
|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++... +++++
T Consensus 236 G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~--~~~~~ 312 (517)
T 3r44_A 236 GVTLISMP-QFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAAK--NIEVV 312 (517)
T ss_dssp TCEEEECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHHT--TCEEE
T ss_pred CeEEEEeC-CCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHhc--CCcEE
Confidence 99999986 4789999999999999999999999999988755445668899999999999999999988876 78999
Q ss_pred ccccccccccccccCCC-CCCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCcccccccccc
Q 004821 502 ECCGGTELASSYIQGSM-LQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHE 575 (728)
Q Consensus 502 n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t 575 (728)
|.||+||+++..+.... ......+++|+|+++++++|+|++|+++|.| . |||+| +.||++ +++.|
T Consensus 313 ~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~GY~~------~p~~t 383 (517)
T 3r44_A 313 QGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKEYWN------RPEAT 383 (517)
T ss_dssp EEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSEETT------CHHHH
T ss_pred EeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhhhCC------Chhhh
Confidence 99999999875544333 2244567899999999999999999999998 4 99999 456666 55577
Q ss_pred cccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceE
Q 004821 576 EVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEV 655 (728)
Q Consensus 576 ~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~ 655 (728)
++.|.. +||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.
T Consensus 384 ~~~f~~-------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~ 454 (517)
T 3r44_A 384 RDAFDN-------GWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG-EI 454 (517)
T ss_dssp HHTEET-------TEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EE
T ss_pred HhhhcC-------CCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC-ce
Confidence 777732 39999999999999999999999999999999999999999995 9999999999999988877 78
Q ss_pred EEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcccc
Q 004821 656 LVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELS 723 (728)
Q Consensus 656 l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 723 (728)
++++| ..++.. .+.+++++ +++++||.||+|+.|+++++||+|+||||||++|++++.+.+.
T Consensus 455 ~~a~v-~~~~~~-~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~ 516 (517)
T 3r44_A 455 AAAIV-VADQNE-VSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSATVP 516 (517)
T ss_dssp EEEEE-EECTTT-CCHHHHHH----HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGGCC
T ss_pred EEEEE-ECCCCC-CCHHHHHH----HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhhcc
Confidence 88888 555444 55555555 6778999999999999999999999999999999999987654
No 13
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.4e-78 Score=697.11 Aligned_cols=484 Identities=19% Similarity=0.204 Sum_probs=400.9
Q ss_pred CCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCC
Q 004821 190 DDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFA 268 (728)
Q Consensus 190 pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p 268 (728)
||++|++++++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+|+|+++||++|.+|
T Consensus 39 pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~aG~~~vpl~~~~~ 110 (617)
T 3rg2_A 39 SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVLALFSHQ 110 (617)
T ss_dssp CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhcCeEEccCCcccc
Confidence 99999999877 999999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCC-cEEEEecccCCcccccccccccHHHHhcccCCCCCCCC
Q 004821 269 AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL-KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKY 347 (728)
Q Consensus 269 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (728)
.+++.++++++++++++++....... .......+....+. ..+.+... .....+.+....... .
T Consensus 111 ~~~l~~~l~~~~~~~vl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-----~ 175 (617)
T 3rg2_A 111 RSELNAYASQIEPALLIADRQHALFS-GDDFLNTFVTEHSSIRVVQLLND---------SGEHNLQDAINHPAE-----D 175 (617)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHHSTTCCEEEEETC---------CSTTBHHHHHHSCCS-----S
T ss_pred HHHHHHHHhhcCceEEEecccccccc-cHHHHHHHhhcCCccceeeeccc---------ccccchhhhhccccc-----c
Confidence 99999999999999999987532100 00111222222222 22222111 011233333332221 1
Q ss_pred CCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhh--HHHHHHHHhCCEE
Q 004821 348 YPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGP--IILFSSFLSGAAL 425 (728)
Q Consensus 348 ~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~i~~~l~~G~~l 425 (728)
.......++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|.+++ +++|.+|+.|+++
T Consensus 176 ~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~ 255 (617)
T 3rg2_A 176 FTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTV 255 (617)
T ss_dssp CCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEE
T ss_pred cCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEE
Confidence 22334567999999999999999999999999999999999889999999999999998877665 4699999999999
Q ss_pred EEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcC--CCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCeecc
Q 004821 426 ALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCL--QGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIEC 503 (728)
Q Consensus 426 v~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~--~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (728)
++.+ ..++..++++|+++++|++.++|+++..|++.... ...++++||.+++|||++++++.+++...+ +++++|.
T Consensus 256 v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~-~~~~~~~ 333 (617)
T 3rg2_A 256 VLAA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEI-GCQLQQV 333 (617)
T ss_dssp EECS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHHHHT-CSEEEEE
T ss_pred EEeC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHHHHh-CCcEEEE
Confidence 9987 46788999999999999999999999999875332 233688999999999999999999988764 6899999
Q ss_pred ccccccccccccCCCCCCCcccccCCCC-CCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCcccccccccccc
Q 004821 504 CGGTELASSYIQGSMLQPQAFGAFSTAT-MTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEV 577 (728)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (728)
||+||+++.++...........++|+|+ ++++++|+|++++++|.|+. |||+| +.||++ +++.|++
T Consensus 334 YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~GY~~------~p~~t~~ 405 (617)
T 3rg2_A 334 FGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRGYYK------SPQHNAS 405 (617)
T ss_dssp EEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSCCTT------CHHHHHH
T ss_pred eccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccchhcC------Chhhhhh
Confidence 9999998765443332223346899998 78899999999999999996 99998 456766 5568888
Q ss_pred cccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEE
Q 004821 578 YFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLV 657 (728)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~ 657 (728)
+|..++ ||||||+|++++||+|+|+||.|||||++|+||+|+|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 406 ~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~ 477 (617)
T 3rg2_A 406 AFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELMG-EKSC 477 (617)
T ss_dssp HBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEE
T ss_pred ccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCcccC-eeEE
Confidence 897554 9999999999999999999999999999999999999999995 9999999999999888777 8999
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHH-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcc
Q 004821 658 ICVVLKKGFTSQPVDKLKMIFSKAIQR-NLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 721 (728)
Q Consensus 658 a~vv~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 721 (728)
+|++..+. .+.+++++ ++++ .||.||+|+.|+++++||+|+|||+||++|++.+...
T Consensus 478 a~vv~~~~---~~~~~l~~----~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~~ 535 (617)
T 3rg2_A 478 AYLVVKEP---LRAVQVRR----FLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLASR 535 (617)
T ss_dssp EEEEESSC---CCHHHHHH----HHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHHH
T ss_pred EEEEeCCC---CCHHHHHH----HHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhcc
Confidence 99999874 45555555 5656 6999999999999999999999999999999987654
No 14
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=6.3e-79 Score=691.61 Aligned_cols=469 Identities=19% Similarity=0.191 Sum_probs=391.7
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++||
T Consensus 48 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 119 (563)
T 1amu_A 48 QVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPI 119 (563)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEEe
Confidence 4578999999998766 899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCC-CcEEEEecccCCcccccccccccHHHHhcccCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGP-LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (728)
||.++.+++.+++++++++++|++.... ........ ..+..+.. .. + ....
T Consensus 120 ~~~~~~~~l~~il~~~~~~~li~~~~~~---------~~~~~~~~~~~~~~~~~-----------~~--~----~~~~-- 171 (563)
T 1amu_A 120 DIEYPKERIQYILDDSQARMLLTQKHLV---------HLIHNIQFNGQVEIFEE-----------DT--I----KIRE-- 171 (563)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH---------HHHTTSCCCSEEEECCC-----------ST--T----TTSC--
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEcCchh---------hhhhhccccCceeeecc-----------hh--h----cccc--
Confidence 9999999999999999999999987432 11111000 11111100 00 0 0000
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhC
Q 004821 343 PGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSG 422 (728)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G 422 (728)
.........+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|+.+++.++.+|+.|
T Consensus 172 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G 248 (563)
T 1amu_A 172 ---GTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTG 248 (563)
T ss_dssp ---CSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHHHHHHTTT
T ss_pred ---CccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHHHHHHHCC
Confidence 01112234678999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred CEEEEecCC--CChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCe
Q 004821 423 AALALYHGS--PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPI 500 (728)
Q Consensus 423 ~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l 500 (728)
+++++.+.. .++..+++.|+++++|++.++|+++..|... .+++||.+++||+++++++.+++.+. +++
T Consensus 249 ~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~~---~~~ 319 (563)
T 1amu_A 249 ASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKEK---VTY 319 (563)
T ss_dssp CEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTTT---SEE
T ss_pred CEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHhC---CeE
Confidence 999998642 4788999999999999999999999877542 36789999999999999998888653 689
Q ss_pred eccccccccccccccCCCC--CCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCcccccccc
Q 004821 501 IECCGGTELASSYIQGSML--QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNAD 573 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~ 573 (728)
+|.||+||++++++..... ......++|+|++|++++|+|++|+++|.|+. |||+| +.||++ +++
T Consensus 320 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~pe 391 (563)
T 1amu_A 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLARGYWK------RPE 391 (563)
T ss_dssp EEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHH
T ss_pred EEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhChhhCC------Cch
Confidence 9999999998755443221 22345689999999999999999999999995 99999 345665 566
Q ss_pred cccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCc
Q 004821 574 HEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGP 653 (728)
Q Consensus 574 ~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~ 653 (728)
.|++.|..+|+.+|++||+|||+|++|+||+|+|+||.||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+
T Consensus 392 ~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~- 469 (563)
T 1amu_A 392 LTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQEQ- 469 (563)
T ss_dssp HHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTSC-
T ss_pred hhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCCC-
Confidence 88889998888788899999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred eEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHH
Q 004821 654 EVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQL 718 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 718 (728)
+.++|||+.... .+.+++++ +++++||.||+|..|+++++||+|+||||||++|++..
T Consensus 470 ~~~~a~vv~~~~---~~~~~l~~----~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 470 PYLCAYFVSEKH---IPLEQLRQ----FSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp EEEEEEEEESSC---CCHHHHHH----HHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred eEEEEEEEeCCC---CCHHHHHH----HHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 899999998653 44555544 67789999999999999999999999999999998754
No 15
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=3.9e-79 Score=737.80 Aligned_cols=559 Identities=17% Similarity=0.191 Sum_probs=325.9
Q ss_pred cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceeccceecccCCCCCCCCCCcCCCCcchhhhcccccccccCCCCCce
Q 004821 114 YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKCILDRTDKSKHGGTWLPGSVLNVAECCLLPSSRLRKEDDSV 193 (728)
Q Consensus 114 y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~pd~~ 193 (728)
|++ ++.++.||++|..++.++++.+...+........-... .....-....+.. ..+. .+++++||++
T Consensus 11 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~tl~-~~l~--~~a~~~pd~~ 78 (979)
T 3tsy_A 11 SSG-----LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK----LPDIYIPNHLSLH-DYIF--QNISEFATKP 78 (979)
T ss_dssp ---------------------------------------CCCBCCS----SCCCCCCTTSCHH-HHHT--TTGGGTTTSE
T ss_pred ccC-----cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC----CCCCCCCCCCCHH-HHHH--HHHHhCCCCe
Confidence 777 99999999999999999998875444433322211110 0000000111111 1222 2458899999
Q ss_pred EEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHH
Q 004821 194 AVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREI 272 (728)
Q Consensus 194 Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l 272 (728)
|+++...+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++||+||.+|.+++
T Consensus 79 Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l 152 (979)
T 3tsy_A 79 CLINGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEI 152 (979)
T ss_dssp EEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHH
T ss_pred EEEECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHH
Confidence 99986321 3899999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCCCCCCCCCcc
Q 004821 273 ATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVY 352 (728)
Q Consensus 273 ~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (728)
.+++++++++++|+++... .....+.......++.++.. .......+...+.++...... .....+...
T Consensus 153 ~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 221 (979)
T 3tsy_A 153 AKQAKASNTKLIITEARYV------DKIKPLQNDDGVVIVCIDDN---ESVPIPEGCLRFTELTQSTTE--ASEVIDSVE 221 (979)
T ss_dssp HHHHHHHTEEEEEECSTTT------TTSHHHHHTSCCEEEECCCC---TTSCCCTTEEEGGGTSSCCSG--GGGGSCCSC
T ss_pred HHHHHHcCCeEEEEChHHH------HHHHHHhhcCCceEEEeCCc---ccccCCcccccHHHHhhcccc--ccccCCcCC
Confidence 9999999999999997543 22222222222222222211 111112233344444332211 011122334
Q ss_pred CCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhc----ccCCCCCCEEEeecccchhhhh-HHHHHHHHhCCEEEE
Q 004821 353 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG----HIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSGAALAL 427 (728)
Q Consensus 353 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~i~~~l~~G~~lv~ 427 (728)
..++|++||+|||||||+||||+++|+++++.+.+... .+++.++|++++.+|++|++++ ..++.+|..|+++++
T Consensus 222 ~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~ 301 (979)
T 3tsy_A 222 ISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILI 301 (979)
T ss_dssp CCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEE
T ss_pred CCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEE
Confidence 57899999999999999999999999999988876543 4678899999999999999998 457889999999999
Q ss_pred ecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCeecccccc
Q 004821 428 YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGT 507 (728)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~T 507 (728)
.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+++++++|.||+|
T Consensus 302 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~T 380 (979)
T 3tsy_A 302 MP-KFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMT 380 (979)
T ss_dssp CS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECG
T ss_pred eC-CCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechh
Confidence 87 46889999999999999999999999999988766677789999999999999999999999988889999999999
Q ss_pred ccccccccCC----CCCCCcccccCCCCCCceEEEEC-CCCCcCCCCCCcceeEEE-----ecccCCCcccccccccccc
Q 004821 508 ELASSYIQGS----MLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEV 577 (728)
Q Consensus 508 E~~~~~~~~~----~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~ 577 (728)
|++.+++... ...+...+++|+|++|++++|+| ++|+++|.|+. |||+| +.||++ +++.|++
T Consensus 381 E~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~GY~~------~p~~t~~ 452 (979)
T 3tsy_A 381 EAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKGYLN------NPAATAE 452 (979)
T ss_dssp GGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSEETT------CHHHHHH
T ss_pred hhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCccccccC------Chhhhhh
Confidence 9986544321 12334567899999999999999 56999999996 99999 456666 5557777
Q ss_pred cccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEE
Q 004821 578 YFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLV 657 (728)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~ 657 (728)
.|..+ +||||||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.++
T Consensus 453 ~f~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~ 524 (979)
T 3tsy_A 453 TIDKD------GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPV 524 (979)
T ss_dssp HBCTT------SCEEEEEEEEECTTSCEEEEEESCC--------------------------------------------
T ss_pred hccCC------CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEE
Confidence 78543 39999999999999999999999999999999999999999995 9999999999999988777 8999
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcccc
Q 004821 658 ICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELS 723 (728)
Q Consensus 658 a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 723 (728)
|||+..++.. .+.+++ +++|+++||.||+|..|+++++||+|+||||||++|++++.+.++
T Consensus 525 a~vv~~~~~~-~~~~~l----~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~ 585 (979)
T 3tsy_A 525 AFVVKSKDSE-LSEDDV----KQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLANGLG 585 (979)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEEEECCCCC-CCHHHH----HHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHhhcC
Confidence 9999877654 444444 446778999999999999999999999999999999998876543
No 16
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.3e-77 Score=679.40 Aligned_cols=492 Identities=18% Similarity=0.167 Sum_probs=405.6
Q ss_pred cCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004821 186 LRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA 264 (728)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (728)
++++ |++|+++.+.+ +++||+||+++++++|+.|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 36 ~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~ 108 (548)
T 2d1s_A 36 YAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTN 108 (548)
T ss_dssp HHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEEC
T ss_pred hccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccC
Confidence 3567 99999984211 2899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCC--CcEEEEecccCCcccccccccccHHHHhcccCCC
Q 004821 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGP--LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (728)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (728)
|.++.+++.+++++++++++|+++... ..........+ ..++.+. ... ...+...|+++......
T Consensus 109 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~- 175 (548)
T 2d1s_A 109 EIYTLRELVHSLGISKPTIVFSSKKGL------DKVITVQKTVTTIKTIVILD--SKV----DYRGYQCLDTFIKRNTP- 175 (548)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECTTTH------HHHHHHHHHSTTCCEEEETT--CSS----CBTTBCBHHHHHHHTSC-
T ss_pred CCCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHhcCCCCCCEEEEeC--Ccc----cccccccHHHHHhcCcc-
Confidence 999999999999999999999987532 11222222222 1222221 100 00112346666543321
Q ss_pred CCCCCCCCccC------CCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcc---cCCCCCCEEEeecccchhhhhH
Q 004821 343 PGPKYYPPVYR------PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH---IDMKVGDVYCWPTNLGWVMGPI 413 (728)
Q Consensus 343 ~~~~~~~~~~~------~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
. ..+.... .+++++||+|||||||+||||+++|+++.+.+.+.... ++++++|++++.+|++|+++++
T Consensus 176 -~--~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 252 (548)
T 2d1s_A 176 -P--GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMF 252 (548)
T ss_dssp -T--TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHH
T ss_pred -c--cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHH
Confidence 0 0111111 23899999999999999999999999999988887766 7889999999999999999986
Q ss_pred H-HHHHHHhCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHH
Q 004821 414 I-LFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLA 492 (728)
Q Consensus 414 ~-i~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~ 492 (728)
. ++.++ .|+++++.+ ..++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.
T Consensus 253 ~~~~~~l-~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~ 330 (548)
T 2d1s_A 253 TTLGYLI-CGFRVVMLT-KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSKEVGEAVA 330 (548)
T ss_dssp HHHHHHH-TTCEEEECC-CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCCHHHHHHHH
T ss_pred HHHHHHh-cCcEEEEcC-CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCCHHHHHHHH
Confidence 6 55666 999999987 47899999999999999999999999999987655556789999999999999999999999
Q ss_pred HhcCCCCeeccccccccccccccCCCCCCCcccccCCCCCCceEEEEC-CCCCcCCCCCCcceeEEE-----ecccCCCc
Q 004821 493 SKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGAT 566 (728)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~g~~~iGel~v-----~~~y~~~~ 566 (728)
+.+++++++|.||+||++..++... ......+++|+|+++++++|+| ++|+++|.|+. |||+| +.||++
T Consensus 331 ~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~-- 405 (548)
T 2d1s_A 331 RRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPMLMKGYVN-- 405 (548)
T ss_dssp HHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT--
T ss_pred HHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHHhhhhcC--
Confidence 8887889999999999987554432 2334567899999999999999 78999999996 99999 345665
Q ss_pred ccccccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEee
Q 004821 567 DRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISV 646 (728)
Q Consensus 567 ~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~ 646 (728)
+++.|++.|..+ +||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.
T Consensus 406 ----~~~~t~~~f~~~------g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V~~~ 474 (548)
T 2d1s_A 406 ----NPEATKELIDEE------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGVAGV 474 (548)
T ss_dssp ----CHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEEEEE
T ss_pred ----ChHHhhhcccCC------cEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEE
Confidence 455677777532 39999999999999999999999999999999999999999996 9999999999999
Q ss_pred cCCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccc-eEEEcCCCCCCCCchhhHHHHHHHHhccccc
Q 004821 647 SPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVS-LVKIVLEFPRTASNKLLRRVLKDQLKHELSV 724 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~-~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 724 (728)
+++..| +.++|||+++++.. .+.+++++ +++++||.|++|. .|+++++||+|+|||++|++|++++.+.+++
T Consensus 475 ~~~~~g-~~~~a~vv~~~~~~-~~~~~l~~----~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~i~~ 547 (548)
T 2d1s_A 475 PDPVAG-ELPGAVVVLESGKN-MTEKEVMD----YVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKKPVAK 547 (548)
T ss_dssp EETTTE-EEEEEEEEECTTCC-CCHHHHHH----HHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHSCC--
T ss_pred EcCCCC-eeeEEEEEEcCCCC-CCHHHHHH----HHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhhhhhc
Confidence 988777 89999999987655 56555554 6778999999999 9999999999999999999999999887753
No 17
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=2.3e-78 Score=682.80 Aligned_cols=490 Identities=15% Similarity=0.135 Sum_probs=397.7
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 13 ~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~vpl 84 (521)
T 3l8c_A 13 FAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKSGHAYIPV 84 (521)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHhCCEEEec
Confidence 3478999999999877 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
+|.++.+++.+++++++++++|+++......... . ...+.++......
T Consensus 85 ~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~--------------~----------------~~~~~~~~~~~~~-- 132 (521)
T 3l8c_A 85 DVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI--------------S----------------LVSLSEIESAKLA-- 132 (521)
T ss_dssp ETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS--------------E----------------EEEHHHHHHHHHH--
T ss_pred CccccHHHHHHHHHhCCCCEEEecCccccccccC--------------c----------------ccchhhhhhcccc--
Confidence 9999999999999999999999987542111100 0 0111111111000
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcc--cCCCCCCEEEeecccchhhhhHHHHHHHHh
Q 004821 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH--IDMKVGDVYCWPTNLGWVMGPIILFSSFLS 421 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~ 421 (728)
...........+++++||+|||||||.||||+++|+++.+.+.+.... +++.+++++++..|++|+.+++.++.++..
T Consensus 133 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 212 (521)
T 3l8c_A 133 EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWAPTLAL 212 (521)
T ss_dssp TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHHHHHHT
T ss_pred cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHHHHHhc
Confidence 000112234568999999999999999999999999999888877655 778899999999999999999889999999
Q ss_pred CCEEEEecCC--CChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCC
Q 004821 422 GAALALYHGS--PLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKP 499 (728)
Q Consensus 422 G~~lv~~~~~--~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~ 499 (728)
|+++++.+.. .++..+++.|+++++|++.++|+++..+.........++++||.+++||+++++++.+++.+.+++++
T Consensus 213 G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~ 292 (521)
T 3l8c_A 213 GGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFERFPSAK 292 (521)
T ss_dssp TCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCE
T ss_pred CCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHHCCCce
Confidence 9999998743 37889999999999999999999999998876666677899999999999999999999999988899
Q ss_pred eeccccccccccccccCCCC----CCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCccccc
Q 004821 500 IIECCGGTELASSYIQGSML----QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLL 570 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~ 570 (728)
++|.||+||+++.++..... .....+++|+|+++++++|+|++|+++|.|+. |||+| +.||++
T Consensus 293 i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~GY~~------ 364 (521)
T 3l8c_A 293 IINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKGYLN------ 364 (521)
T ss_dssp EEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSCBTT------
T ss_pred EEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChhhcC------
Confidence 99999999998765443221 11234689999999999999999999999996 99999 346665
Q ss_pred ccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCC
Q 004821 571 NADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAG 650 (728)
Q Consensus 571 ~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~ 650 (728)
+++.|++.|... ++.+||+|||+|++|+||+++|+||.||+||++|+||+|.|||++|. +||+|.+|+|++..+..
T Consensus 365 ~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~ 440 (521)
T 3l8c_A 365 NPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKE 440 (521)
T ss_dssp CHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSS
T ss_pred CchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCC
Confidence 556777777542 35669999999999999999999999999999999999999999995 99999999999987654
Q ss_pred CCceEEEEEEEEcCCCCC--CChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcccccCC
Q 004821 651 GGPEVLVICVVLKKGFTS--QPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELSVRS 726 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~--~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 726 (728)
.+.+.++|+|+++++... ....++.+.|+++|+++||.||+|..|+++++||+|+||||||++|++.+.++-++..
T Consensus 441 ~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~~~~~ 518 (521)
T 3l8c_A 441 HKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNREGHHH 518 (521)
T ss_dssp CC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC-------
T ss_pred CCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCCcccc
Confidence 433789999999886431 1233567788889999999999999999999999999999999999999987765544
No 18
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2e-77 Score=671.82 Aligned_cols=475 Identities=21% Similarity=0.193 Sum_probs=390.4
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++...+ +++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 11 ~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 84 (504)
T 1t5h_X 11 AATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRLGAVPALL 84 (504)
T ss_dssp HHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Confidence 34789999999986211 3899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEe--ccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFT--QDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (728)
||.++.+++.+++++++++++|+ +... ...+........ ++ .++++......
T Consensus 85 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~---------~~~~~~~~~~~~-~~----------------~~~~~~~~~~~ 138 (504)
T 1t5h_X 85 NPRLKSAELAELIKRGEMTAAVIAVGRQV---------ADAIFQSGSGAR-II----------------FLGDLVRDGEP 138 (504)
T ss_dssp CTTSCHHHHHHHHHHTTCSEEEECC--CH---------HHHHHHHCCCCE-EE----------------EGGGTEETTEE
T ss_pred CCccChHHHHHHHhhcCCcEEEEecchhh---------hhhhhhccccce-eE----------------EecchhhcCcc
Confidence 99999999999999999999999 5432 111201111111 11 12222211100
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCC--CCCCEEEeecccchhhhh-HHHHHH
Q 004821 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDM--KVGDVYCWPTNLGWVMGP-IILFSS 418 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~-~~i~~~ 418 (728)
.............++++|||+|||||||+||||+++|+++.+.+.+....+++ .++|++++.+|++|++++ ..++.+
T Consensus 139 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~ 218 (504)
T 1t5h_X 139 YSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAA 218 (504)
T ss_dssp CCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHTTTHHHH
T ss_pred cccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHHHHHHHH
Confidence 00000111133467999999999999999999999999999998888778888 889999999999999998 578899
Q ss_pred HHhCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCc--CCCCCccceeeEEeeCCCCCcchHHHHHHhcC
Q 004821 419 FLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNC--LQGLDWTKIRSFASTGETSNVDDDLWLASKAY 496 (728)
Q Consensus 419 l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~--~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~ 496 (728)
|+.|+++++.+ ..++..+++.|+++++|++.++|++++.|++... ....++++||.+++|||++++++.+++.+.+
T Consensus 219 l~~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~- 296 (504)
T 1t5h_X 219 LALDGTYVVVE-EFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLETVHQHL- 296 (504)
T ss_dssp HHTTCEEEECS-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHHHHHHC-
T ss_pred HHcCceEEeCC-CCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHHHHHhc-
Confidence 99999999987 4788999999999999999999999999987542 2345688999999999999999999998876
Q ss_pred CCCeeccccccccccccccCCCCCCCcccccCCCCCCceEEEECCCC---CcCCCCCCcceeEEEe------cccCCCcc
Q 004821 497 YKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELG---VPYPDDQPCVGEVGLF------PLYLGATD 567 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~---~~~p~g~~~iGel~v~------~~y~~~~~ 567 (728)
+++++|.||+||+++++... ....+++|+|+++++++|+|+++ +++|.|+. |||+|. .||++
T Consensus 297 ~~~~~~~YG~TE~~~~~~~~----~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~GY~~--- 367 (504)
T 1t5h_X 297 PGEKVNIYGTTEAMNSLYMR----QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFVGYLN--- 367 (504)
T ss_dssp CSEEEEEEEETTTEEEEEEE----SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCCCBTT---
T ss_pred Ccceeeeecccccccccccc----CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeeceecC---
Confidence 47899999999994332211 23457899999999999999888 99999996 999995 35555
Q ss_pred cccccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeec
Q 004821 568 RLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVS 647 (728)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~ 647 (728)
+++.|++.|. +| ||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+
T Consensus 368 ---~~~~t~~~f~-----~g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~ 436 (504)
T 1t5h_X 368 ---QPQATAEKLQ-----DG--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGLA 436 (504)
T ss_dssp ---CHHHHHHHEE-----TT--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEE
T ss_pred ---Cchhhhhhhc-----CC--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEee
Confidence 5557777773 13 9999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHH-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHh
Q 004821 648 PAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQR-NLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLK 719 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 719 (728)
++..| +.++|||+++++.. .+.+++++ ++++ +||.||+|+.|+++++||+|+||||||++|+++++
T Consensus 437 ~~~~g-~~~~a~vv~~~~~~-~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 437 DQRWG-QSVTACVVPRLGET-LSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp CSSSS-EEEEEEEEECTTCC-CCHHHHHH----HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred cCCCC-cEEEEEEEecCCcC-cCHHHHHH----HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 98888 89999999987655 56555555 5667 89999999999999999999999999999999874
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=1.7e-79 Score=698.49 Aligned_cols=473 Identities=20% Similarity=0.219 Sum_probs=310.6
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.++ ++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 84 ~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl 155 (570)
T 4gr5_A 84 QAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLKAGGGYTML 155 (570)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHHCCEEEEc
Confidence 4578999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
+|.++.+++.+++++++++++|+++...... .....+.... .....
T Consensus 156 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~~~~~----------------~~~~~----- 201 (570)
T 4gr5_A 156 DPQFPVERLALSLEDTGAPLLVTSRPLSGRL-------------TGTTTLYVED----------------EAASD----- 201 (570)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECTTTTTSS-------------CSSEEEECCC--------------------------
T ss_pred CCCChHHHHHHHHHhcCCCEEEecchhhhcc-------------cCCcceeeec----------------ccccc-----
Confidence 9999999999999999999999987532110 1111111000 00000
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCC
Q 004821 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGA 423 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~ 423 (728)
...........+++++||+|||||||.||||+++|+++.+.+.+ ...++++++|++++++|++|+.+.+.++.+|+.|+
T Consensus 202 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~ 280 (570)
T 4gr5_A 202 APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGA 280 (570)
T ss_dssp --CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTC
T ss_pred ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCC
Confidence 00111223456899999999999999999999999999876654 45678999999999999999999889999999999
Q ss_pred EEEEecC-CCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCeec
Q 004821 424 ALALYHG-SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIE 502 (728)
Q Consensus 424 ~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n 502 (728)
++++.+. ..++..++++|+++++|++.++|++++.|++... .++++||.+++|||++++++.+++.+.+++++++|
T Consensus 281 ~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~ 357 (570)
T 4gr5_A 281 RCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGN 357 (570)
T ss_dssp EEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEE
T ss_pred EEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEE
Confidence 9999864 4588899999999999999999999999987643 24789999999999999999888888888899999
Q ss_pred cccccccccccccCCC---CCCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCccccccccc
Q 004821 503 CCGGTELASSYIQGSM---LQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADH 574 (728)
Q Consensus 503 ~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~ 574 (728)
.||+||++...+.... .......++|+|++|++++|+|++++++|.|+. |||+| +.||++ +++.
T Consensus 358 ~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~GY~~------~~~~ 429 (570)
T 4gr5_A 358 GYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAHGYVS------RPAL 429 (570)
T ss_dssp EECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCCEETT------CHHH
T ss_pred eechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccchhcCC------Cchh
Confidence 9999999875543322 122344679999999999999999999999995 99999 446666 5668
Q ss_pred ccccccccccC--CCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCC
Q 004821 575 EEVYFSGMPIY--KGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGG 652 (728)
Q Consensus 575 t~~~f~~~p~~--~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g 652 (728)
|++.|..+|+. +|.+||||||+|++|+||+|+|+||+|||||++|+||+|.|||++|. +||+|.+|+|++.+++.++
T Consensus 430 t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~~ 508 (570)
T 4gr5_A 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLGD 508 (570)
T ss_dssp HHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC------------------------------------------
T ss_pred hhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCCC
Confidence 88899887763 46789999999999999999999999999999999999999999995 9999999999999887777
Q ss_pred ceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHH
Q 004821 653 PEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQ 717 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 717 (728)
+.++|||+.+.+....+.+ .|+++|+++||.||+|..|+++++||+|+||||||++|++.
T Consensus 509 -~~~~a~vv~~~~~~~~~~~----~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 509 -KQLVAYVVAERADAPPDAA----ELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------
T ss_pred -eEEEEEEEecCCCCCcCHH----HHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 8999999987543213334 45556778999999999999999999999999999999875
No 20
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=4.2e-77 Score=677.62 Aligned_cols=516 Identities=22% Similarity=0.267 Sum_probs=415.3
Q ss_pred CCCcCCCCcchhhhccccccc---ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh--cCCCCEEEE
Q 004821 164 GGTWLPGSVLNVAECCLLPSS---RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM--FSKGDAIAI 238 (728)
Q Consensus 164 ~~~~~~~~~~~~~~~~l~~~~---~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~--v~~gd~V~i 238 (728)
...|..+...+....++.+++ +++++||++|+++.+.. +..+++||+||+++++++|++|++. +++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 345665555555555555443 23349999999985321 1235899999999999999999986 999999999
Q ss_pred EcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCC--cEEEEec
Q 004821 239 DMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL--KAVVLPV 316 (728)
Q Consensus 239 ~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 316 (728)
+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|+++... .....+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVI------QEVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTH------HHHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHH------HHHHHHhhcCCceeEEEEecc
Confidence 99999999999999999999999999999999999999999999999987532 112222222222 2222221
Q ss_pred ccCCcccccccccccHHHHhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHH-HHHHHhcccCCC
Q 004821 317 IGDDVGIQLRQQDVSWKDFLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIR-CAAEAWGHIDMK 395 (728)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~-~~~~~~~~~~~~ 395 (728)
.. ..+...+.++...... ........+++++||+|||||||+||||+++|+.+.+ ...+. ..++++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~ 245 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST-----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQ 245 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS-----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCC
T ss_pred cC-------ccccccHHHHhhcccc-----cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCC
Confidence 00 0123346665543322 1122334679999999999999999999999994332 44444 678899
Q ss_pred CCCEEEeecccchhhhhH-HHHHHHHhCCEEEEecC-CCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccce
Q 004821 396 VGDVYCWPTNLGWVMGPI-ILFSSFLSGAALALYHG-SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKI 473 (728)
Q Consensus 396 ~~d~~l~~~~~~~~~~~~-~i~~~l~~G~~lv~~~~-~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~L 473 (728)
++|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|++.. ....++++|
T Consensus 246 ~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~l 324 (570)
T 3c5e_A 246 ASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHL 324 (570)
T ss_dssp TTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTC
T ss_pred CCceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccc
Confidence 999999999999999985 78899999999999864 568999999999999999999999999998763 334568899
Q ss_pred eeEEeeCCCCCcchHHHHHHhcCCCCeeccccccccccccccCCCCCCCcccccCCCCCCceEEEECCCCCcCCCCCCcc
Q 004821 474 RSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCV 553 (728)
Q Consensus 474 r~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~i 553 (728)
|.+++|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|+++++++|+|++|+++|.|+.
T Consensus 325 r~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~-- 400 (570)
T 3c5e_A 325 QNCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE-- 400 (570)
T ss_dssp CEEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC--
T ss_pred eEEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC--
Confidence 9999999999999999888775 688999999999986544332 223456789999999999999999999999996
Q ss_pred eeEEEe----------cccCCCcccccccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeec
Q 004821 554 GEVGLF----------PLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTS 623 (728)
Q Consensus 554 Gel~v~----------~~y~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~ 623 (728)
|||+|. .||++ +++.|++.|.. +||+|||+|++++||+++|+||.|||||++|+||+
T Consensus 401 GEl~v~~~~~~g~~v~~GY~~------~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~ 467 (570)
T 3c5e_A 401 GDIGIRVKPIRPIGIFSGYVD------NPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIG 467 (570)
T ss_dssp EEEEEECSSBCCTTCCCEETT------CHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEEC
T ss_pred CeeEEeccCCCCchhhccccC------ChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEEC
Confidence 999995 24444 55677777752 39999999999999999999999999999999999
Q ss_pred hhhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCC
Q 004821 624 SVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPR 703 (728)
Q Consensus 624 ~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~ 703 (728)
|.|||++|. +||+|.+|+|++.+++..+ +.++|||++.++....+.+.+.+.|+++|+++||+||+|+.|+++++||+
T Consensus 468 p~eIE~~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~ 545 (570)
T 3c5e_A 468 PSEVENALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPK 545 (570)
T ss_dssp HHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCB
T ss_pred HHHHHHHHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCC
Confidence 999999995 9999999999999988777 89999999876532123456677888899999999999999999999999
Q ss_pred CCCchhhHHHHHHHHhcc
Q 004821 704 TASNKLLRRVLKDQLKHE 721 (728)
Q Consensus 704 t~~GKvdR~~L~~~~~~~ 721 (728)
|+|||+||++|++.+...
T Consensus 546 t~~GKi~R~~L~~~~~~~ 563 (570)
T 3c5e_A 546 TVTGKIQRAKLRDKEWKM 563 (570)
T ss_dssp CTTCCBCHHHHHHHHTC-
T ss_pred CCCcCCcHHHHHHHHHhh
Confidence 999999999999988653
No 21
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=8.6e-79 Score=688.86 Aligned_cols=491 Identities=18% Similarity=0.204 Sum_probs=315.3
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.++ ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 39 ~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~Gav~vpl 110 (544)
T 3o83_A 39 GVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNA 110 (544)
T ss_dssp HHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHhCcEEecC
Confidence 4578999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCC-cEEEEecccCCcccccccccccHHHHhcccCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL-KAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYH 342 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (728)
+|.++.+++.+++++++++++|+++..... ........+...... ..++..... .....+.++......
T Consensus 111 ~~~~~~~~l~~~l~~~~~~~li~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~- 180 (544)
T 3o83_A 111 LYSHRQYELNAFIKQIQPKLLIGSRQHEVF-SNNQFIDSLHDVNLSPEIILMLNHQ--------ATDFGLLDWIETPAE- 180 (544)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEEETTSGGG-SSSHHHHHHHHTTCCCSEEEEETCC--------TTSEEHHHHHHSCCS-
T ss_pred CCCCCHHHHHHHHHhcCeeEEEEccccccc-cHHHHHHHHhhcccCcceEEEecCC--------ccccchhhhhhcccc-
Confidence 999999999999999999999998753200 001112222222222 222221111 011233344332221
Q ss_pred CCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhH--HHHHHHH
Q 004821 343 PGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPI--ILFSSFL 420 (728)
Q Consensus 343 ~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~--~i~~~l~ 420 (728)
.........++++|||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|.+++. .++.+|.
T Consensus 181 ---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~ 257 (544)
T 3o83_A 181 ---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSPGALGVLH 257 (544)
T ss_dssp ---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSSHHHHHHH
T ss_pred ---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchHHHHHHHH
Confidence 11112345689999999999999999999999999999999998899999999999999999888774 6899999
Q ss_pred hCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCe
Q 004821 421 SGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPI 500 (728)
Q Consensus 421 ~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l 500 (728)
.|+++++.+ ..++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+ ++++
T Consensus 258 ~G~~~v~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~~ 335 (544)
T 3o83_A 258 AGGCVVMAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPEVL-NCKL 335 (544)
T ss_dssp TTCEEEECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHHHH-CSEE
T ss_pred cCCEEEECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHHHh-CCcE
Confidence 999999987 46889999999999999999999999999887555555688999999999999999999888775 6899
Q ss_pred eccccccccccccccCCCCCCCcccccCCCC-CCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCccccccccc
Q 004821 501 IECCGGTELASSYIQGSMLQPQAFGAFSTAT-MTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADH 574 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~ 574 (728)
+|.||+||+++.++...........++|+|+ ++++++|+|++++++|.|+. |||+| +.||++ +++.
T Consensus 336 ~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~~~~ 407 (544)
T 3o83_A 336 QQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCGYYQ------SPEH 407 (544)
T ss_dssp EEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSCCTT------CHHH
T ss_pred EeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchhhcC------Chhh
Confidence 9999999998654443332233457899996 89999999999999999996 99999 346665 5567
Q ss_pred ccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCce
Q 004821 575 EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPE 654 (728)
Q Consensus 575 t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~ 654 (728)
|++.|..+ +||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +
T Consensus 408 t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g-~ 479 (544)
T 3o83_A 408 NSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG-E 479 (544)
T ss_dssp HHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC------------------------------------------
T ss_pred hhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC-c
Confidence 88888543 39999999999999999999999999999999999999999995 9999999999999998888 8
Q ss_pred EEEEEEEEcCCCCCCChHHHHHHHHHHHHH-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhc
Q 004821 655 VLVICVVLKKGFTSQPVDKLKMIFSKAIQR-NLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKH 720 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 720 (728)
.++|||+..+.. .+.+++++ ++++ .||.||+|+.|+++++||+|+|||+||++|++++..
T Consensus 480 ~~~a~vv~~~~~--~~~~~l~~----~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 480 KSCAFIVSRNPE--LKAVVLRR----HLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp -------------------------------------------------------------------
T ss_pred eEEEEEEeCCCC--CCHHHHHH----HHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhh
Confidence 999999987632 34444444 5656 799999999999999999999999999999998865
No 22
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=3.6e-78 Score=683.34 Aligned_cols=490 Identities=20% Similarity=0.220 Sum_probs=367.6
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 27 ~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 27 AAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp HHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCcEEEec
Confidence 3478999999996321 1224899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCc--EEEEecccCCcccccccccccHHHHhcccCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLK--AVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (728)
+|.++.+++.+++++++++++|+++... +....+....+.. ++++.... ......++++......
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 169 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEEALGEEAD 169 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHHHCCSCCC
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHHHhhccCC
Confidence 9999999999999999999999987532 1122222222221 22211100 0123345555432221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHH--hcccCCCCCCEEEeecccchhhhhHHHHHHH
Q 004821 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA--WGHIDMKVGDVYCWPTNLGWVMGPIILFSSF 419 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l 419 (728)
.....+++++||+|||||||+||||+++|+++.+...+. ...++++++|++++.+|++|+.++..++.++
T Consensus 170 --------~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~l 241 (541)
T 1v25_A 170 --------PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAAT 241 (541)
T ss_dssp --------CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHTHHHHHH
T ss_pred --------cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHHHHHHHH
Confidence 123457899999999999999999999999998777653 3467889999999999999999987788999
Q ss_pred HhCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCC
Q 004821 420 LSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKP 499 (728)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~ 499 (728)
+.|+++++.+...++..+++.|+++++|++.++|++++.|++.......++++||.+++|||++++++.+++ +. .+++
T Consensus 242 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~~-~g~~ 319 (541)
T 1v25_A 242 LVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-ER-MGVE 319 (541)
T ss_dssp HHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-HH-TTCE
T ss_pred hcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-HH-hCCc
Confidence 999999998765689999999999999999999999999987654444568899999999999999999888 44 4789
Q ss_pred eeccccccccccccccCCCCC----------CCcccccCCCCCCceEEEECCCCCcCCC-C-CCcceeEEE-----eccc
Q 004821 500 IIECCGGTELASSYIQGSMLQ----------PQAFGAFSTATMTTGFVILDELGVPYPD-D-QPCVGEVGL-----FPLY 562 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~~~vld~~~~~~p~-g-~~~iGel~v-----~~~y 562 (728)
++|.||+||++.+++...... ....+++|+|+++++++|+|++|+++|. | + +|||+| +.||
T Consensus 320 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~--~GEl~v~g~~v~~GY 397 (541)
T 1v25_A 320 VRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKA--LGEVQLKGPWITGGY 397 (541)
T ss_dssp EEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCC--CEEEEEESTTSBSSC
T ss_pred eeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCc--ceEEEEeCcchhccc
Confidence 999999999987655443210 0234789999999999999999999985 3 4 499999 4566
Q ss_pred CCCcccccccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeee
Q 004821 563 LGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETA 642 (728)
Q Consensus 563 ~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~ 642 (728)
++ +++.|++.|..+ | ||+|||+|++|+||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+
T Consensus 398 ~~------~p~~t~~~f~~~----g--~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~ 464 (541)
T 1v25_A 398 YG------NEEATRSALTPD----G--FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAA 464 (541)
T ss_dssp BT------CHHHHHTTBCTT----S--CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------C
T ss_pred cC------ChhhhhhhccCC----C--CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEE
Confidence 66 555777778642 2 9999999999999999999999999999999999999999995 999999999
Q ss_pred EEeecCCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHH-hcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcc
Q 004821 643 AISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQR-NLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 721 (728)
Q Consensus 643 vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 721 (728)
|++.+++..+ +.++|||++. +.. .+.+++++ ++++ +||.||+|+.|+++++||+|+|||+||++|++.+.+.
T Consensus 465 Vv~~~~~~~~-~~~~a~vv~~-~~~-~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 465 VVAIPHPKWQ-ERPLAVVVPR-GEK-PTPEELNE----HLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp EEEEECSSSS-EEEEECC-------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EEEecCCCcC-ceEEEEEEEC-CCC-CCHHHHHH----HHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 9999998887 8999999987 322 34444444 5667 8999999999999999999999999999999998776
Q ss_pred cc
Q 004821 722 LS 723 (728)
Q Consensus 722 ~~ 723 (728)
++
T Consensus 538 ~~ 539 (541)
T 1v25_A 538 YG 539 (541)
T ss_dssp SC
T ss_pred hC
Confidence 54
No 23
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=4.7e-78 Score=684.08 Aligned_cols=504 Identities=17% Similarity=0.172 Sum_probs=308.9
Q ss_pred ccCCCCCceEEE---EecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEE
Q 004821 185 RLRKEDDSVAVV---WREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVV 260 (728)
Q Consensus 185 ~a~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~ 260 (728)
+++++|+++|++ +... .+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|+++
T Consensus 29 ~a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~Gav~ 102 (550)
T 3rix_A 29 AMKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAV 102 (550)
T ss_dssp HHHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHHHTCEE
T ss_pred HHHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHHHHHcCCEE
Confidence 346788888875 3221 13899999999999999999999 9999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccC
Q 004821 261 VSIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVD 340 (728)
Q Consensus 261 vpl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (728)
+|++|.++.+++.+++++++++++|+++... ..........+....++...... ...+..++.++.....
T Consensus 103 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 172 (550)
T 3rix_A 103 APANDIYNERELLNSMNISQPTVVFVSKKGL------QKILNVQKKLPIIQKIIIMDSKT----DYQGFQSMYTFVTSHL 172 (550)
T ss_dssp EECCTTCCHHHHHHHHHHHCCSEEEECGGGH------HHHHHHHHHCTTCCEEEETTCSS----CBTTBCBHHHHHHHHC
T ss_pred eecCCcCCHHHHHHHHHhcCCeEEEEcHHHH------HHHHHHHhhCCCcceEEEEcCCc----cccCcccHHHHhhccc
Confidence 9999999999999999999999999987532 22222233333222222111110 0123345555554332
Q ss_pred CCCC-CCC-CCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcc---cCCCCCCEEEeecccchhhhhHHH
Q 004821 341 YHPG-PKY-YPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH---IDMKVGDVYCWPTNLGWVMGPIIL 415 (728)
Q Consensus 341 ~~~~-~~~-~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~~~~~~~~~~i 415 (728)
.... ... .+.....++++|||+|||||||+||||+++|+++.+.+.+.... +++.++|++++.+|++|+++++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~ 252 (550)
T 3rix_A 173 PPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTT 252 (550)
T ss_dssp CTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHH
T ss_pred cccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHH
Confidence 1000 011 11122346889999999999999999999999999888777655 578899999999999999999989
Q ss_pred HHHHHhCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhc
Q 004821 416 FSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKA 495 (728)
Q Consensus 416 ~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~ 495 (728)
+.+++.|+++++.+ ..++..+++.|+++++|++.++|++++.|++.......++++||.+++|||++++++.+++.+.+
T Consensus 253 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~ 331 (550)
T 3rix_A 253 LGYLICGFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSKEVGEAVAKRF 331 (550)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCHHHHHHHHHHT
T ss_pred HHHHHcCCEEEEeC-CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCHHHHHHHHHHc
Confidence 99999999999986 47889999999999999999999999999988766667789999999999999999999999887
Q ss_pred CCCCeeccccccccccccccCCCCCCCcccccCCCCCCceEEEEC-CCCCcCCCCCCcceeEEE-----ecccCCCcccc
Q 004821 496 YYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGL-----FPLYLGATDRL 569 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~ 569 (728)
+...++|.||+||+++.++.... .....+++|+|+++++++|+| ++|+++|.|+. |||+| +.||++
T Consensus 332 ~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~----- 403 (550)
T 3rix_A 332 HLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIMSGYVN----- 403 (550)
T ss_dssp TCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSEETT-----
T ss_pred CCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcchhhcC-----
Confidence 65569999999999876554433 345668899999999999999 57999999996 99999 456666
Q ss_pred cccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCC
Q 004821 570 LNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPA 649 (728)
Q Consensus 570 ~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~ 649 (728)
+++.|+..|..+ +||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+++
T Consensus 404 -~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~ 475 (550)
T 3rix_A 404 -NPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVAGLPDD 475 (550)
T ss_dssp -CHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC-----------------------------------------
T ss_pred -ChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEEEeecC
Confidence 455777777533 39999999999999999999999999999999999999999995 9999999999999998
Q ss_pred CCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCccc-ceEEEcCCCCCCCCchhhHHHHHHHHhccc-ccCCC
Q 004821 650 GGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKV-SLVKIVLEFPRTASNKLLRRVLKDQLKHEL-SVRSR 727 (728)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P-~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~-~~~~~ 727 (728)
..| +.++++|+++++.. .+.+++++ +++++|++|+.| ..|+++++||+|+||||||++|++++.+.. ..++|
T Consensus 476 ~~g-~~~~a~vv~~~~~~-~~~~~l~~----~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~~~~~~~ 549 (550)
T 3rix_A 476 DAG-ELPAAVVVLEHGKT-MTEKEIVD----YVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAKKGGKSK 549 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC-ceEEEEEEecCCCC-CCHHHHHH----HHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhccccccC
Confidence 887 89999999987655 45555555 566788888655 579999999999999999999999987653 33344
No 24
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=7e-78 Score=676.67 Aligned_cols=482 Identities=16% Similarity=0.140 Sum_probs=305.4
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++||
T Consensus 15 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga~~vpl 86 (509)
T 3ivr_A 15 NAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVALIGAILLPV 86 (509)
T ss_dssp HHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTCEEEEC
T ss_pred HHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHhCCEEEec
Confidence 4478999999999776 999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
||.+|.+++.+++++++++++|++.... ..........+....++.... ....+.++......
T Consensus 87 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-- 149 (509)
T 3ivr_A 87 NYRLNADEIAFVLGDGAPSVVVAGTDYR------DIVAGVLPSLGGVKKAYAIGD---------GSGPFAPFKDLASD-- 149 (509)
T ss_dssp CTTSCHHHHHHHHHHHCEEEEEECSTTH------HHHHHHGGGCSSCCEEEESSC---------CCSSCEEGGGTCCC--
T ss_pred CCCCCHHHHHHHHHhcCceEEEECcchh------hhHHhhhcccCCceEEEEcCC---------CCcChhhHhhccCC--
Confidence 9999999999999999999999987532 111111122222111111111 11122222221111
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCC
Q 004821 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGA 423 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~ 423 (728)
.........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+++.|+
T Consensus 150 --~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g 227 (509)
T 3ivr_A 150 --TPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGG 227 (509)
T ss_dssp --SCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTC
T ss_pred --CCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCC
Confidence 112233457899999999999999999999999999999999988999999999999999999999988877777777
Q ss_pred EEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCeecc
Q 004821 424 ALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIEC 503 (728)
Q Consensus 424 ~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~ 503 (728)
+.++.. ..++..+++.|+++++|++.++|+++..|++.. ...++++||.++.+|++ +..+++...+++++++|.
T Consensus 228 ~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~ 301 (509)
T 3ivr_A 228 ASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATCPNATFWAT 301 (509)
T ss_dssp EEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEE
T ss_pred cEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhcCCCeEEcc
Confidence 777766 678999999999999999999999999998875 34457899999999987 777888888888999999
Q ss_pred ccccccccccccCCCCCCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCccccccccccccc
Q 004821 504 CGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEVY 578 (728)
Q Consensus 504 YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~~ 578 (728)
||+||++.+++..... ....++|+|++|++++|+|++++++|.|+. |||+| +.||++ +++.|++.
T Consensus 302 YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~t~~~ 371 (509)
T 3ivr_A 302 FGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKGYWN------NAAATQHA 371 (509)
T ss_dssp EEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCEETT------CHHHHHHH
T ss_pred cCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCccccccC------CHHHhHHH
Confidence 9999998765544322 223459999999999999999999999996 99999 446665 55577777
Q ss_pred ccccccCCCccceecCCeEEEecCCcEEEEeec--CCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEE
Q 004821 579 FSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA--DDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVL 656 (728)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~--dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l 656 (728)
|.. +||+|||+|++++||+++|+||. ||+||++|+||+|.|||++|. +||+|.+|+|++.+++..+ +.+
T Consensus 372 f~~-------g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~-~~~ 442 (509)
T 3ivr_A 372 FRN-------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS-EAI 442 (509)
T ss_dssp TGG-------GSEEEEEEEEECTTSCEEEEEEC-----------------------------------------------
T ss_pred hhc-------CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-cEE
Confidence 752 39999999999999999999999 999999999999999999995 9999999999999988877 899
Q ss_pred EEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcccc
Q 004821 657 VICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHELS 723 (728)
Q Consensus 657 ~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 723 (728)
+++|++.++.. .+.++++ ++|+++||.||+|+.|+++++||+|+||||||++|++++.+.-+
T Consensus 443 ~a~v~~~~~~~-~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~ 504 (509)
T 3ivr_A 443 KAVCVCKPGES-IAADALA----EFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGH 504 (509)
T ss_dssp -------------------------------------------------------------------
T ss_pred EEEEEeCCCCC-CCHHHHH----HHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhccc
Confidence 99999887654 4444444 46778899999999999999999999999999999999877543
No 25
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=4.3e-76 Score=665.37 Aligned_cols=484 Identities=22% Similarity=0.251 Sum_probs=387.0
Q ss_pred cCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004821 186 LRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA 264 (728)
Q Consensus 186 a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (728)
++ +||++|+++.+. ++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|++
T Consensus 34 ~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~ 104 (529)
T 2v7b_A 34 ET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFLGALYAGVVPVVAN 104 (529)
T ss_dssp GG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHHHHHHHTCEEEECC
T ss_pred hc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCceEEecC
Confidence 36 999999998765 899999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCC---CcEEEEecccCCcccccccccccHHHHhcccCC
Q 004821 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGP---LKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (728)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (728)
|.++.+++.+++++++++++|++.... .......+... ..++++..... .......++++......
T Consensus 105 ~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 173 (529)
T 2v7b_A 105 TLLTPADYVYMLTHSHARAVIASGALV------QNVTQALESAEHDGCQLIVSQPRES-----EPRLAPLFEELIDAAAP 173 (529)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEEGGGH------HHHHHHHHCC---CCEEEEECC-----------CCCBHHHHHHTSCC
T ss_pred cccCHHHHHHHHhccCCeEEEechhhh------hHHHHHHhhccccCceEEEeccccc-----ccccccchhhhhccCCC
Confidence 999999999999999999999987532 11112211111 12222211100 00012246665542221
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchH-HHHHHHHhcccCCCCCCEEEeecccchhhhhH-HHHHHH
Q 004821 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSP-IRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPI-ILFSSF 419 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-~i~~~l 419 (728)
........++|++||+|||||||+||||+++|+++ .+...+....+++.++|++++.+|++|++++. .++.+|
T Consensus 174 -----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l 248 (529)
T 2v7b_A 174 -----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPL 248 (529)
T ss_dssp -----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTSHHHHHHHTHHHH
T ss_pred -----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHHHHHHHHHHHHHH
Confidence 11223456799999999999999999999999999 66666666678899999999999999999985 467899
Q ss_pred HhCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCC
Q 004821 420 LSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKP 499 (728)
Q Consensus 420 ~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~ 499 (728)
..|+++++.+...++..+++.|+++++|++.++|+++..|+...........+||.+++|||++++++.+++.+.+ +++
T Consensus 249 ~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~~~~~~~~~-g~~ 327 (529)
T 2v7b_A 249 SVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREIGERFTAHF-GCE 327 (529)
T ss_dssp HHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHHHHHHHHHH-SCC
T ss_pred hcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHHHHHHHHHh-CCc
Confidence 9999999886567899999999999999999999999999876543322123899999999999999999998775 689
Q ss_pred eeccccccccccccccCCCCCCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCccccccccc
Q 004821 500 IIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADH 574 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~ 574 (728)
++|.||+||++..++..... ....+++|+|++|++++|+|++|+++|.|+. |||+| +.||++ +++.
T Consensus 328 i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~gY~~------~~~~ 398 (529)
T 2v7b_A 328 ILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVMYWN------NREK 398 (529)
T ss_dssp EEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCCBTT------CHHH
T ss_pred eeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccccCC------ChHH
Confidence 99999999996544443322 2456789999999999999999999999996 99999 345555 4556
Q ss_pred ccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCce
Q 004821 575 EEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPE 654 (728)
Q Consensus 575 t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~ 654 (728)
|+..|.. +||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++. ++..+ +
T Consensus 399 t~~~f~~-------~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~-~~~~~-~ 468 (529)
T 2v7b_A 399 SRATFLG-------EWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEAAVVGV-DHGGL-V 468 (529)
T ss_dssp HHHHEET-------TEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEEEEEEE-EETTE-E
T ss_pred HHHhhhc-------CCcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEEe-cCCCc-e
Confidence 7777752 39999999999999999999999999999999999999999995 9999999999998 55555 8
Q ss_pred EEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004821 655 VLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKD 716 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 716 (728)
.++|+|++.++.. ..+.+.+.|+++++++||+||+|..|+++++||+|+|||++|++|++
T Consensus 469 ~~~a~vv~~~~~~--~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 469 KTRAFVVLKREFA--PSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EEEEEEEECTTCC--CCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred EEEEEEEecCCCC--cchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 8999999987532 12335567888899999999999999999999999999999999985
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.1e-76 Score=661.39 Aligned_cols=460 Identities=20% Similarity=0.227 Sum_probs=364.5
Q ss_pred ccCCCCC-ceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDD-SVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++|+ ++|++++++ ++||+||+++++++|++|. .|++|+|+++|++++++++|||+++|+++|||
T Consensus 31 ~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~----~~~~V~i~~~~~~~~~~~~la~~~~Ga~~vpl 98 (505)
T 3nyq_A 31 APTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG----GAGRVAVWATPAMETGVAVVAALLAGVAAVPL 98 (505)
T ss_dssp CCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC-------CEEEECCSSHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc----CCCEEEEEcCCCHHHHHHHHHHHHhCCEEEEc
Confidence 3466776 999999876 9999999999999998775 48999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCC
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHP 343 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
||.+|.+++.+++++++++++|++.... .. .. . .....+.+.. .
T Consensus 99 ~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~--~~-~--~~~~~~~~~~-----------------------~--- 142 (505)
T 3nyq_A 99 NPKSGDKELAHILSDSAPSLVLAPPDAE-----LP--PA-L--GALERVDVDV-----------------------R--- 142 (505)
T ss_dssp CTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC--GG-G--TTSEEEECCT-----------------------T---
T ss_pred CCCCCHHHHHHHHHHCCCCEEEECCccc-----cc--hh-h--cccccccccc-----------------------c---
Confidence 9999999999999999999999986421 00 00 0 0000010000 0
Q ss_pred CCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhh-HHHHHHHHhC
Q 004821 344 GPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSG 422 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~l~~G 422 (728)
.....+.....+++++||+|||||||+||||+++|+++.+.+.+....++++++|++++.+|++|..++ +.++.+|..|
T Consensus 143 ~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G 222 (505)
T 3nyq_A 143 ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRG 222 (505)
T ss_dssp CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTTTHHHHHHT
T ss_pred cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHHHHHHHhcC
Confidence 001112234567999999999999999999999999999999998889999999999999999999887 5789999999
Q ss_pred CEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcC---CCCCccceeeEEeeCCCCCcchHHHHHHhcCCCC
Q 004821 423 AALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCL---QGLDWTKIRSFASTGETSNVDDDLWLASKAYYKP 499 (728)
Q Consensus 423 ~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~---~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~ 499 (728)
+++++.+ ..++..+++.+ ++++|+++++|+++..|++.... ...+++++|.+++||+++++++.+++.+.+ +++
T Consensus 223 ~~~~~~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~-~~~ 299 (505)
T 3nyq_A 223 GSVRHLG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERIAAAT-GRR 299 (505)
T ss_dssp CEEEECS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHHHHHH-SCC
T ss_pred CEEEECC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHHHHhc-CCe
Confidence 9999886 57788888999 88999999999999999874321 123467899999999999999999888764 689
Q ss_pred eeccccccccccccccCCCCCCCcccccCCCCCCceEEEECCCCCcCCC---CCCcceeEEE-----ecccCCCcccccc
Q 004821 500 IIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDELGVPYPD---DQPCVGEVGL-----FPLYLGATDRLLN 571 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~---g~~~iGel~v-----~~~y~~~~~~~~~ 571 (728)
++|.||+||+++.++.. .......+++|+|++|++++|+|++|++++. |+. |||+| +.||++ +
T Consensus 300 ~~~~YG~TE~~~~~~~~-~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~ 370 (505)
T 3nyq_A 300 VIERYGMTETLMNTSVR-ADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTEYLN------R 370 (505)
T ss_dssp CEEEEEETTTEEEEECC-TTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCEETT------C
T ss_pred eecccchhhcccccccC-CCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhhhCC------C
Confidence 99999999998754443 3334556789999999999999999999886 775 99999 456666 5
Q ss_pred cccccccccccccCCCccceecCCeEEEecCCcEEEEeec-CCccccCceeechhhHHHHHccCCCceeeeeEEeecCCC
Q 004821 572 ADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA-DDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAG 650 (728)
Q Consensus 572 ~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~-dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~ 650 (728)
++.|++.|..++ ||+|||+|++++||+++|+||. |+|||++|+||+|.|||++|. +||+|.+|+|++.+++.
T Consensus 371 ~~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~~~~ 443 (505)
T 3nyq_A 371 PDATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEPDPD 443 (505)
T ss_dssp HHHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETT
T ss_pred hhHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeECCC
Confidence 567888886543 9999999999999999999998 699999999999999999995 99999999999999988
Q ss_pred CCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHH
Q 004821 651 GGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKD 716 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 716 (728)
.+ +.++|||++.++....+.+++ +++|+++||+||+|+.|+++++||+|+||||||++|++
T Consensus 444 ~g-~~l~a~vv~~~~~~~~~~~~l----~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 444 LG-ERIVAWIVPADPAAPPALGTL----ADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp TE-EEEEEEEEESSTTSCCCHHHH----HHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CC-cEEEEEEEECCCCCCCCHHHH----HHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 87 899999999864321444444 45677899999999999999999999999999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=5.7e-75 Score=651.96 Aligned_cols=483 Identities=16% Similarity=0.179 Sum_probs=365.9
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhhcCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecC
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTMFSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIA 264 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~ 264 (728)
+++++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|++++|++
T Consensus 10 ~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~--~gd~V~i~~~n~~e~~~~~lA~~~~Gav~vpl~ 79 (501)
T 3ipl_A 10 QAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY--QQSRVGLYIDNSIQSIILIHACWLANIEIAMIN 79 (501)
T ss_dssp HHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT--CCSEEEEECCSSHHHHHHHHHHHHTTCEEEECC
T ss_pred HHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEecC
Confidence 4578999999998776 999999999999999999986 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCCCCC
Q 004821 265 DSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDYHPG 344 (728)
Q Consensus 265 p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (728)
|.++.+++.+++++++++++|++...............+.. ............ ......+............
T Consensus 80 ~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 151 (501)
T 3ipl_A 80 TRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDDIEF-----AGRDITTNGLLD---NTMGIQYDTSNETVVPKES 151 (501)
T ss_dssp TTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEETTC----------------------------------------CC
T ss_pred ccCCHHHHHHHHHhcCCCEEEEcccccccccccccccccee-----eeeecccccccc---cccccccccchhhccccCC
Confidence 99999999999999999999999865432211110000000 000000000000 0000000000000000000
Q ss_pred CCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCE
Q 004821 345 PKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAA 424 (728)
Q Consensus 345 ~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~ 424 (728)
..........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++..++.+++.|++
T Consensus 152 ~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~ 231 (501)
T 3ipl_A 152 PSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFT 231 (501)
T ss_dssp HHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCE
T ss_pred cccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCce
Confidence 00011223568999999999999999999999999999999988888999999999999999999999889999999999
Q ss_pred EEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCeeccc
Q 004821 425 LALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECC 504 (728)
Q Consensus 425 lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (728)
+++.+ ..++..+++.|+++++|++.++|++++.|++...... .+||.+++|||++++++.+++.+. +++++|.|
T Consensus 232 ~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~~--~~~~~~~Y 305 (501)
T 3ipl_A 232 VRIVD-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQY--NLPIYNSF 305 (501)
T ss_dssp EEECS-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHHT--TCCEEEEE
T ss_pred EEeCC-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHHh--CCCEeccc
Confidence 99987 4789999999999999999999999999988754432 289999999999999999888763 78999999
Q ss_pred cccccccccccCCCC-CCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEE-----ecccCCCccccccccccccc
Q 004821 505 GGTELASSYIQGSML-QPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEVY 578 (728)
Q Consensus 505 G~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~~ 578 (728)
|+||+++.++..... .....+++|+|+++++++|+|++ .|+ +|||+| +.||++ +++.|..
T Consensus 306 G~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~--~GEl~v~g~~~~~gY~~------~~~~t~~- 371 (501)
T 3ipl_A 306 GMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEG--HGELMIKGANVMNGYLY------PTDLTGT- 371 (501)
T ss_dssp EEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSC--CEEEEEESTTSCSCCSB------STTCCCS-
T ss_pred cccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCC--ccEEEEeccchhhhhCc------Chhhcch-
Confidence 999998654433321 12345789999999999999976 344 399999 446665 3445544
Q ss_pred ccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEEE
Q 004821 579 FSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVI 658 (728)
Q Consensus 579 f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a 658 (728)
|. .+||+|||+|++++||+++|+||.|||||++|+||+|.|||++|. +||+|.+|+|++.+++..| +.+++
T Consensus 372 ~~-------~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a 442 (501)
T 3ipl_A 372 FE-------NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKL 442 (501)
T ss_dssp EE-------TTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hc-------CCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEE
Confidence 32 239999999999999999999999999999999999999999995 9999999999999998877 88999
Q ss_pred EEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcc
Q 004821 659 CVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 721 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 721 (728)
+++...+ .+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++....+
T Consensus 443 ~v~~~~~---~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 443 YFVSESD---ISKAQLIA----YLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEESSC---CCHHHHHH----HHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEEeCCC---CCHHHHHH----HHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 9997543 45555555 67788999999999999999999999999999999987654
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=2.1e-74 Score=656.42 Aligned_cols=488 Identities=18% Similarity=0.192 Sum_probs=297.6
Q ss_pred ccCCCCCceEEEEecCC--CCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEE
Q 004821 185 RLRKEDDSVAVVWREDR--CDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVV 261 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~--~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~v 261 (728)
+++++||++|+++.+.. ......+++||+||+++++++|++|.+. + +||+|+|+++|++++++++|||+++|+++|
T Consensus 29 ~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 29 WAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIMKSGNTYV 107 (562)
T ss_dssp HHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHHHhCCEEE
Confidence 34789999999986531 1112235899999999999999999999 8 799999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHhcccCC
Q 004821 262 SIADSFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFLSCVDY 341 (728)
Q Consensus 262 pl~p~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (728)
||||.++.+++.+++++++++++|+++....... ......++.. ....+.+.......
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~~~~~~~ 165 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----------LPPETKVLDT-----------KNQSFIENLSTQDT 165 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----------CCTTCEEEET-----------TCHHHHHHHHHSCC
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----------cCccceeecc-----------cchhhhhhcccccc
Confidence 9999999999999999999999999864321110 0111111110 11122222222211
Q ss_pred CCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhc--------ccCCCCCCEEEeecccchhhhhH
Q 004821 342 HPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWG--------HIDMKVGDVYCWPTNLGWVMGPI 413 (728)
Q Consensus 342 ~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~--------~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
........+++++||+|||||||+||||+++|+++.+.+.+... .+.+...+++++.++++|+.++.
T Consensus 166 -----~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (562)
T 3ite_A 166 -----SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIG 240 (562)
T ss_dssp -----SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHH
T ss_pred -----cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHH
Confidence 11122345788999999999999999999999999887765443 35578899999999999999999
Q ss_pred HHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHH
Q 004821 414 ILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLAS 493 (728)
Q Consensus 414 ~i~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~ 493 (728)
.++.++..|+++++.+....+..+.+.++++++|++.++|++++.+... ..++++||.+++||+++++++.+++.+
T Consensus 241 ~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~~~~~~ 316 (562)
T 3ite_A 241 EMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQQIWSS 316 (562)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHHHHHhh
Confidence 9999999999999876433456789999999999999999999887543 235789999999999999999888876
Q ss_pred hcCCCCeeccccccccccccccCCCCCCCcccccCCCCCCceEEEECC-CCCcCCCCCCcceeEEE-----ecccCCCcc
Q 004821 494 KAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTATMTTGFVILDE-LGVPYPDDQPCVGEVGL-----FPLYLGATD 567 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~g~~~iGel~v-----~~~y~~~~~ 567 (728)
. ++++++|.||+||+++.++...........++|+|+++++++|+|+ .++++|.|+. |||+| +.||+++
T Consensus 317 ~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~GY~~~-- 391 (562)
T 3ite_A 317 S-DRVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANGYLNR-- 391 (562)
T ss_dssp C-SSCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCEESSC--
T ss_pred C-CCcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchhhCCC--
Confidence 4 5789999999999987655544444455678999999999999995 5888999996 99999 4567664
Q ss_pred cccccccccccccccccCCCccceecCCeEEEecCCcEEEEeecCCccccCceeechhhHHHHHccCC-CceeeeeEEee
Q 004821 568 RLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCDGAD-ESILETAAISV 646 (728)
Q Consensus 568 ~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~-p~V~~a~vv~~ 646 (728)
++.|+..| .+|.+||+|||+|++|+||+++|+||.|||||++|+||+|.|||++|. +| |.|.+++|++.
T Consensus 392 ----p~~t~~~~-----~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 392 ----PDAKGFCD-----INGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLL 461 (562)
T ss_dssp ----TTCCSEEE-----ETTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------
T ss_pred ----cccccccc-----CCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEe
Confidence 33444333 246789999999999999999999999999999999999999999996 66 88899999888
Q ss_pred cCCCCCceEEEEEEEEcCCCCCCC---------hHHHHHHHHHHHHHhcCCCcccceEEEcCCCCCC-CCchhhHHHHHH
Q 004821 647 SPAGGGPEVLVICVVLKKGFTSQP---------VDKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRT-ASNKLLRRVLKD 716 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~---------~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t-~~GKvdR~~L~~ 716 (728)
+++..+ +..+++++...+.. .. ...+.+.|+++|+++||.||+|+.|+++++||+| +|||+||++|++
T Consensus 462 ~~~~~~-~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~ 539 (562)
T 3ite_A 462 NHPGTS-KQFLVSFVASSGAA-VRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEH 539 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCc-ceEEEEEEeccccc-ccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHH
Confidence 887776 55454444433322 11 1223456777888999999999999999999998 999999999999
Q ss_pred HHhcc
Q 004821 717 QLKHE 721 (728)
Q Consensus 717 ~~~~~ 721 (728)
++++.
T Consensus 540 ~~~~~ 544 (562)
T 3ite_A 540 MFHTL 544 (562)
T ss_dssp -----
T ss_pred HHhcc
Confidence 88653
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=8.1e-73 Score=647.92 Aligned_cols=491 Identities=15% Similarity=0.125 Sum_probs=388.2
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++||++|+++.+. +..+++||+||+++++++|++|++. +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 20 ~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 95 (590)
T 3kxw_A 20 RALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYAGCIAVPI 95 (590)
T ss_dssp HHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHhCcEEEEe
Confidence 4478999999998642 1224899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC---HHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCC--cEEEEecccCCcccccccccccHHHHhcc
Q 004821 264 ADSFA---AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPL--KAVVLPVIGDDVGIQLRQQDVSWKDFLSC 338 (728)
Q Consensus 264 ~p~~p---~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
+|.++ .+++.++++++++++++++.......... .....+. ....+. .+.+...
T Consensus 96 ~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~----------------~~~~~~~ 154 (590)
T 3kxw_A 96 YPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD-----ELNTNPKFLKIPAIA----------------LESIELN 154 (590)
T ss_dssp CCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC----------CCEETTEEEEE----------------GGGCCGG
T ss_pred cCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh-----hhhhcccccccceee----------------chhcccc
Confidence 99984 57899999999999999987532110000 0000000 011111 0111000
Q ss_pred cCCCCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHH-HHH
Q 004821 339 VDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPII-LFS 417 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~-i~~ 417 (728)
.. .........+++++||+|||||||+||||+++|+++++.+.+....++++++|++++++|++|++++.. ++.
T Consensus 155 ~~-----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~ 229 (590)
T 3kxw_A 155 RS-----SSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILT 229 (590)
T ss_dssp GG-----GGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHTTTHH
T ss_pred cc-----ccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhHHHHHH
Confidence 00 111223456899999999999999999999999999999999988999999999999999999999976 889
Q ss_pred HHHhCCEEEEecCCC---ChhhHHHHHHHcCCeEEecchHHHHHHHcc---CcCCCCCccceeeEEeeCCCCCcchHHHH
Q 004821 418 SFLSGAALALYHGSP---LERSFGKFVQDSGVSVLGTVPSLVKAWKNT---NCLQGLDWTKIRSFASTGETSNVDDDLWL 491 (728)
Q Consensus 418 ~l~~G~~lv~~~~~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~---~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~ 491 (728)
+++.|+++++.+... ++..+++.|+++++|++.++|+++..+++. ......++++||.+++|||++++++.+++
T Consensus 230 ~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~ 309 (590)
T 3kxw_A 230 PIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREETMEHF 309 (590)
T ss_dssp HHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHHHHHHH
T ss_pred HHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHHHHHHH
Confidence 999999999986422 678999999999999999999999998775 22345678999999999999999999998
Q ss_pred HHhcC-----CCCeeccccccccccccccCCCC--------------------------CCCcccccCCCCCCceEEEEC
Q 004821 492 ASKAY-----YKPIIECCGGTELASSYIQGSML--------------------------QPQAFGAFSTATMTTGFVILD 540 (728)
Q Consensus 492 ~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~~~vld 540 (728)
.+.++ +.+++|.||+||+++.++..... .....+++|+|+++ ++|+|
T Consensus 310 ~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d 387 (590)
T 3kxw_A 310 YQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID 387 (590)
T ss_dssp HHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC
T ss_pred HHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc
Confidence 88763 45799999999998765543211 11234688999998 88999
Q ss_pred CC-CCcCCCCCCcceeEEE-----ecccCCCcccccccccccccccccccCC--CccceecCCeEEEecCCcEEEEeecC
Q 004821 541 EL-GVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEVYFSGMPIYK--GMHLRRHGDIIKRTVGGYIIVQGRAD 612 (728)
Q Consensus 541 ~~-~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~--g~~~yrTGDl~~~~~dG~l~~~GR~d 612 (728)
++ ++++|.|+. |||+| +.||++ +++.|++.|...+... |.+||+|||+|+++ ||+|+|+||.|
T Consensus 388 ~~~~~~~~~g~~--GEl~v~g~~v~~GY~~------~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~d 458 (590)
T 3kxw_A 388 PDTLIPCDFDQV--GEIWVQSNSVAKGYWN------QPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIK 458 (590)
T ss_dssp TTTCCBCCTTBC--EEEEEESTTSCCCBTT------CHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESS
T ss_pred CCCCcCCCCCCE--EEEEEeCCcccccccC------ChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCcc
Confidence 77 999999986 99999 456666 5668888898765543 55699999999999 99999999999
Q ss_pred CccccCceeechhhHHHHHccCCCcee--eeeEEeecCCCCCceEEEEEEEEcCCCC-CCChHHHHHHHHHHHHHhcCCC
Q 004821 613 DTMNLGGIKTSSVEIERVCDGADESIL--ETAAISVSPAGGGPEVLVICVVLKKGFT-SQPVDKLKMIFSKAIQRNLNPL 689 (728)
Q Consensus 613 d~ik~~G~ri~~~eIE~~l~~~~p~V~--~a~vv~~~~~~~g~~~l~a~vv~~~~~~-~~~~~~l~~~l~~~l~~~Lp~~ 689 (728)
||||++|+||+|.|||++|...||+|. +|+|++++++. + +.+++++++.++.. ..+.+++.++++++|... |
T Consensus 459 d~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~---~ 533 (590)
T 3kxw_A 459 DLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKNRFMDDVAQDNLFNEIFELVYEN---H 533 (590)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHH---H
T ss_pred ceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEeccccccchhHHHHHHHHHHHHHHH---c
Confidence 999999999999999999944899998 89999988765 4 78999999887641 023455666555555433 4
Q ss_pred cccc---eEEEcCCCCCCCCchhhHHHHHHHHhcc
Q 004821 690 FKVS---LVKIVLEFPRTASNKLLRRVLKDQLKHE 721 (728)
Q Consensus 690 ~~P~---~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 721 (728)
++|. .++.+++||+|+||||||++|++++.+.
T Consensus 534 ~~p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~~ 568 (590)
T 3kxw_A 534 QLEVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLDK 568 (590)
T ss_dssp SCCCCEEEEEETTCSCCCSCHHHHHHHHHHHHHHT
T ss_pred CCceeEEEEECCCccCcCCCcHHHHHHHHHHHHcC
Confidence 5553 4455589999999999999999998653
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.7e-70 Score=627.16 Aligned_cols=482 Identities=18% Similarity=0.199 Sum_probs=380.3
Q ss_pred ccCCCCCceEEEEecCCCCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec
Q 004821 185 RLRKEDDSVAVVWREDRCDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl 263 (728)
+++++|+.+++..... ..+++||+||+++++++|++|+++ +++||+|+|+++|++++++++|||+++|++++|+
T Consensus 30 ~a~~~p~~~~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G~~~vpl 104 (576)
T 3gqw_A 30 AALSSAGMNFYDRRCQ-----LEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQYAGLVAVPL 104 (576)
T ss_dssp HTTSSCEEEEECTTSC-----EEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEE
T ss_pred HhhCCCCeEEeCCCCC-----ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCeEeec
Confidence 4578899888754221 124899999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCCC-------HHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCcEEEEecccCCcccccccccccHHHHh
Q 004821 264 ADSFA-------AREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLKAVVLPVIGDDVGIQLRQQDVSWKDFL 336 (728)
Q Consensus 264 ~p~~p-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (728)
+|.++ .+++.+++++++++++|+++... +.........+.... +. ..+.+
T Consensus 105 ~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~------~~~~~~~~~~~~~~~-~~--------------~~~~~-- 161 (576)
T 3gqw_A 105 AIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWL------PLVNAATHDNPELHV-LS--------------HAWFK-- 161 (576)
T ss_dssp CCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGH------HHHHHHGGGCTTCEE-EE--------------HHHHH--
T ss_pred CCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHH------HHHHHhhccCCccee-cc--------------hhhhh--
Confidence 99999 89999999999999999987532 111111111111111 10 00111
Q ss_pred cccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcc-cCCCCCCEEEeecccchhhhhHH-
Q 004821 337 SCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGH-IDMKVGDVYCWPTNLGWVMGPII- 414 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~~~~~~~~- 414 (728)
.... .........+++++||+|||||||.||||+++|+++.+.+.+.... ++++++|++++++|++|++++..
T Consensus 162 -~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~ 236 (576)
T 3gqw_A 162 -ALPE----ADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGF 236 (576)
T ss_dssp -TSCC----CCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTTSHHHHHHH
T ss_pred -cccc----cccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCccccccHHHH
Confidence 1110 1112223467999999999999999999999999999888776544 88999999999999999999865
Q ss_pred HHHHHHhCCEEEEecC---CCChhhHHHHHHHcCCeEEecchHHHHHHHccCc---CCCCCccceeeEEeeCCCCCcchH
Q 004821 415 LFSSFLSGAALALYHG---SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNC---LQGLDWTKIRSFASTGETSNVDDD 488 (728)
Q Consensus 415 i~~~l~~G~~lv~~~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~---~~~~~l~~Lr~v~~~Ge~l~~~~~ 488 (728)
++.++..|+++++.+. ..++..+++.|+++++|++.++|++++.+.+... ....++++||.+++|||++++++.
T Consensus 237 ~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~~~ 316 (576)
T 3gqw_A 237 LLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGAEPISAEQL 316 (576)
T ss_dssp THHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECSSCCCHHHH
T ss_pred HHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccCccCCHHHH
Confidence 6778899999888753 1477899999999999999999999988866432 245668999999999999999999
Q ss_pred HHHHHhcC-----CCCeeccccccccccccccCCCCCC---------------------------CcccccCCCCCCceE
Q 004821 489 LWLASKAY-----YKPIIECCGGTELASSYIQGSMLQP---------------------------QAFGAFSTATMTTGF 536 (728)
Q Consensus 489 ~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG~p~~~~~~ 536 (728)
+++.+.++ +++++|.||+||++..++....... ....++|+|++++++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~ 396 (576)
T 3gqw_A 317 HQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGI 396 (576)
T ss_dssp HHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEE
T ss_pred HHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeE
Confidence 99888764 6789999999999876554432110 112389999999999
Q ss_pred EEECCCCCcCCCCCCcceeEEE-----ecccCCCcccccccccccccccccccCCCccceecCCeEEEecCCcEEEEeec
Q 004821 537 VILDELGVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVGGYIIVQGRA 611 (728)
Q Consensus 537 ~vld~~~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~ 611 (728)
+|+|++|+++|.|+. |||+| +.||+++ ++.++..|. .+||+|||+|++ +||+++|+||.
T Consensus 397 ~i~d~~g~~~~~g~~--GEl~v~g~~~~~gY~~~------~~~~~~~~~-------~g~~~TGDl~~~-~dG~l~~~GR~ 460 (576)
T 3gqw_A 397 EIRNEAGMPVAERVV--GHICISGPSLMSGYFGD------QVSQDEIAA-------TGWLDTGDLGYL-LDGYLYVTGRI 460 (576)
T ss_dssp EEECTTSCBCCTTBC--EEEEEESTTSCCCBTTC------HHHHHHHHH-------HSCEEEEEEEEE-ETTEEEEEEET
T ss_pred EEECCCCCCCCCCCe--EEEEEeCccccccccCC------ccccccccC-------CCeeeccceEEE-ECCEEEEEecC
Confidence 999999999999996 99999 4566653 334444332 239999999999 79999999999
Q ss_pred CCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhc-CCCc
Q 004821 612 DDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNL-NPLF 690 (728)
Q Consensus 612 dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~L-p~~~ 690 (728)
|||||++|+||+|.|||++|. +||+|.+++|++..++.. .++++++.... .+...+.+++.++++| +.|+
T Consensus 461 dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~~~~---~~~~~~~~~~~-----~~~~~~~l~~~l~~~l~~~~~ 531 (576)
T 3gqw_A 461 KDLIIIRGRNIWPQDIEYIAE-QEPEIHSGDAIAFVTAQE---KIILQIQCRIS-----DEERRGQLIHALAARIQSEFG 531 (576)
T ss_dssp TTCEEETTEEECHHHHHHHHT-TSSSCCTTSEEEEECTTS---CEEEEEECCCC-----CHHHHHHHHHHHHHHHHHHHS
T ss_pred cceEEECCEEECHHHHHHHHH-hCcccccccEEEEEcCCc---cEEEEEEEecC-----chhHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999995 999999999998877543 35555554432 2333445555666677 6789
Q ss_pred ccceEEEcC--CCCCCCCchhhHHHHHHHHhccccc
Q 004821 691 KVSLVKIVL--EFPRTASNKLLRRVLKDQLKHELSV 724 (728)
Q Consensus 691 ~P~~i~~v~--~lP~t~~GKvdR~~L~~~~~~~~~~ 724 (728)
+|..+.+++ +||+|+|||+||++|++++.+.+..
T Consensus 532 ~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~~~~ 567 (576)
T 3gqw_A 532 VTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAA 567 (576)
T ss_dssp CCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHHHTC
T ss_pred CceeEEEECCCCcCcCCCccchHHHHHHHHHHHhhh
Confidence 999988887 9999999999999999999876543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2.4e-57 Score=506.48 Aligned_cols=384 Identities=17% Similarity=0.140 Sum_probs=299.2
Q ss_pred ccCCCCCceEEEEecCC-CCCCCceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEe
Q 004821 185 RLRKEDDSVAVVWREDR-CDDSSVNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVS 262 (728)
Q Consensus 185 ~a~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vp 262 (728)
+++++||++|+++.+.. ..++..+++||+||+++++++|++|++. + +||+|+|+++|++++++++|||+++|+++||
T Consensus 33 ~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 33 CARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp HHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHHHTTCEEEE
T ss_pred HHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHHHhCcEEEe
Confidence 45789999999997621 1123346999999999999999999999 8 9999999999999999999999999999999
Q ss_pred cCC---CCCHHHHHHHHHhcCeeEEEeccceeecCccccchHhHHhhCCCc-----EEEEecccCCcccccccccccHHH
Q 004821 263 IAD---SFAAREIATRLRVSKAKGIFTQDFILRGGRKFPLYSKVAEAGPLK-----AVVLPVIGDDVGIQLRQQDVSWKD 334 (728)
Q Consensus 263 l~p---~~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 334 (728)
|++ .++.+++.+++++++++++|++.... ..+.+..... ..++. ++.
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~---------~~~~~~~~~~~~~~~~~~~~----------------~~~ 166 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAV---------DDVVQHVARRPGESPPSIIE----------------VDL 166 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTH---------HHHHHTCC------CCEEEE----------------GGG
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHH---------HHHHHHHhccccccccceeE----------------ecc
Confidence 999 88999999999999999999987532 2222211100 01110 000
Q ss_pred HhcccCCCCCCCCCCCccCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCC------CCEEEeecccch
Q 004821 335 FLSCVDYHPGPKYYPPVYRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKV------GDVYCWPTNLGW 408 (728)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~l~~~~~~~ 408 (728)
.... ...........++++|||+|||||||+||||+++|+++.+.+.+....+++.+ +|++++++|++|
T Consensus 167 ~~~~-----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~~pl~h 241 (480)
T 3t5a_A 167 LDLD-----APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241 (480)
T ss_dssp SCTT-----CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEECCCTTS
T ss_pred cccc-----cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEeCCCcC
Confidence 0000 01112233456789999999999999999999999999999988888888877 999999999999
Q ss_pred hhhh-HHHHHHHHhCCEEEEecCC---CChhhHHHHHHHcCCeEEecchHHHHHHHcc----CcCCCCCccceeeEEeeC
Q 004821 409 VMGP-IILFSSFLSGAALALYHGS---PLERSFGKFVQDSGVSVLGTVPSLVKAWKNT----NCLQGLDWTKIRSFASTG 480 (728)
Q Consensus 409 ~~~~-~~i~~~l~~G~~lv~~~~~---~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~----~~~~~~~l~~Lr~v~~~G 480 (728)
++++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +.++|+++..++.. ......++++||.+++||
T Consensus 242 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~i~~gG 320 (480)
T 3t5a_A 242 DMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILTILSGS 320 (480)
T ss_dssp TTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCEEEECC
T ss_pred ccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhheeeecC
Confidence 9997 5789999999999998643 3788999999999999 88889988887753 233456789999999999
Q ss_pred CCCCcchHHHHHHhc-----CCCCeeccccccccccccccCCCCC------------------------CCcccccCCCC
Q 004821 481 ETSNVDDDLWLASKA-----YYKPIIECCGGTELASSYIQGSMLQ------------------------PQAFGAFSTAT 531 (728)
Q Consensus 481 e~l~~~~~~~~~~~~-----~~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~iG~p~ 531 (728)
|++++++.+++.+++ ++++++|.||+||+++.++...... ....+++|+|+
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~ 400 (480)
T 3t5a_A 321 ERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPR 400 (480)
T ss_dssp TTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCS
T ss_pred CcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCccc
Confidence 999999999998876 3457999999999997665544321 12346899999
Q ss_pred CCceEEEECCC-CCcCCCCCCcceeEEE-----ecccCCCccccccccccccccccccc-----CCCccceecCCeEEEe
Q 004821 532 MTTGFVILDEL-GVPYPDDQPCVGEVGL-----FPLYLGATDRLLNADHEEVYFSGMPI-----YKGMHLRRHGDIIKRT 600 (728)
Q Consensus 532 ~~~~~~vld~~-~~~~p~g~~~iGel~v-----~~~y~~~~~~~~~~~~t~~~f~~~p~-----~~g~~~yrTGDl~~~~ 600 (728)
+ ++++|+|++ |+++|.|+. |||+| +.||++ +++.|++.|...++ .++++||||||+|+++
T Consensus 401 ~-~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~GY~~------~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d 471 (480)
T 3t5a_A 401 S-PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANGYWQ------KPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471 (480)
T ss_dssp S-SEEEEEETTTTEECCTTBC--EEEEEESTTSCCCBTT------BHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred C-CEEEEEcCCCCcCCCCCCE--EEEEEeCCcccccccc------CcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence 9 999999976 899999996 99999 456666 56688888864332 2356799999999997
Q ss_pred cCCcEEEEee
Q 004821 601 VGGYIIVQGR 610 (728)
Q Consensus 601 ~dG~l~~~GR 610 (728)
||+|+|+||
T Consensus 472 -dG~l~~~GR 480 (480)
T 3t5a_A 472 -DGKMFIIGR 480 (480)
T ss_dssp -TTEEEECC-
T ss_pred -CCEEEEeCC
Confidence 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.5e-56 Score=478.18 Aligned_cols=317 Identities=15% Similarity=0.139 Sum_probs=267.3
Q ss_pred CCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecCCCCh
Q 004821 355 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLE 434 (728)
Q Consensus 355 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~~~~~ 434 (728)
.|++|||+|||||||+||||+++|+++.+.+.+....++++++|++++++|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999999875443
Q ss_pred hhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCcchHHHHHHhcCCCCeeccccccccccccc
Q 004821 435 RSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCGGTELASSYI 514 (728)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (728)
+++.|+++++|++.++|++++.|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 3567889999999999999999988654 33468999999999999999999988764 689999999999987554
Q ss_pred cCCCCCCCcccccCCCCCCceEEEECCCCCcCCCCCCcceeEEEecccCCCcccccccccccccccccccCCCccceecC
Q 004821 515 QGSMLQPQAFGAFSTATMTTGFVILDELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHG 594 (728)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~~p~g~~~iGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTG 594 (728)
.... .....+.+|.+.||+.+.+.+. ||+++...+. ..+||+||
T Consensus 190 ~~~~-~~~~~g~~~~~~pgv~~~~~~~------------Gel~~~g~~~-----------------------~~g~~~TG 233 (358)
T 4gs5_A 190 LKAL-NGPEASELYVFLPGIQYGVDER------------GCLHISGAVT-----------------------NGQTVQTN 233 (358)
T ss_dssp EEEC-SSTTCCSCEEECTTCEEEECTT------------SEEEEESGGG-----------------------TTCCEEEE
T ss_pred cccc-cccccceeeccCCCeEEEecCc------------CceEEecccc-----------------------cCcceecC
Confidence 4332 3345578899999988876442 8998743221 12399999
Q ss_pred CeEEEecCCcEEEEeecCCccccCceeechhhHHHHHc--cCCCceeeeeEE-eecCCCCCceEEEEEEEEcCCCCCCCh
Q 004821 595 DIIKRTVGGYIIVQGRADDTMNLGGIKTSSVEIERVCD--GADESILETAAI-SVSPAGGGPEVLVICVVLKKGFTSQPV 671 (728)
Q Consensus 595 Dl~~~~~dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~--~~~p~V~~a~vv-~~~~~~~g~~~l~a~vv~~~~~~~~~~ 671 (728)
|+|++|+|| ++|+||.||+||++|+||+|.|||++|. ..||+|.+|+|+ +.+++..| +.++|+|+...+
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~~------ 305 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAMP------ 305 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCCC------
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCCC------
Confidence 999999988 7788999999999999999999998763 268999999887 56677777 889988875432
Q ss_pred HHHHHHHHHHHHHhcCCCcccceEEEcCCCCCCCCchhhHHHHHHHHhcc
Q 004821 672 DKLKMIFSKAIQRNLNPLFKVSLVKIVLEFPRTASNKLLRRVLKDQLKHE 721 (728)
Q Consensus 672 ~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 721 (728)
+...+.|+++|+++||.||+|+.|+++++||+|+||||||++|++++++.
T Consensus 306 ~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~ 355 (358)
T 4gs5_A 306 EALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDS 355 (358)
T ss_dssp HHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC--
T ss_pred CcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhh
Confidence 34456677788899999999999999999999999999999999998764
No 33
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=2.8e-50 Score=444.07 Aligned_cols=331 Identities=18% Similarity=0.165 Sum_probs=263.7
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHh---cccCCCCCCEEEeecccc-hhhhhHHHHHHHHhCCEEEE
Q 004821 352 YRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLG-WVMGPIILFSSFLSGAALAL 427 (728)
Q Consensus 352 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~i~~~l~~G~~lv~ 427 (728)
..++++++||+|||||||+||||+++|+++.+...+.. ..++++++|++++..|++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34678999999999999999999999999877654433 367899999999999985 66666778899999999988
Q ss_pred ecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCC--ccceeeEEeeCCCCCcchHHHHHHhcCCCCeecccc
Q 004821 428 YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLD--WTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 505 (728)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (728)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 764 58899999999999999999999999998754333333 47999999999999999999998776 688999999
Q ss_pred ccccccc-cccCCCCCCCcccccCCCCCCceEEEEC-CCCCcCCCCCCcceeEEEecccCCCcccccccccccccccccc
Q 004821 506 GTELASS-YIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMP 583 (728)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~g~~~iGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (728)
+||+++. +....... ....+.|.+++.++|+| ++|+++|.|+. |||+|.. .++..| |
T Consensus 246 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~-------------~t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVET---KDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTS-------------LTKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTTT---CCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEE-------------SSCSSS---C
T ss_pred chhhcCCeEEeccCCC---CCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeC-------------CCcccC---h
Confidence 9997432 22222111 11145577899999999 46999999996 9999953 112223 2
Q ss_pred cCCCccceecCCeEEEecC-CcE-----EEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEE
Q 004821 584 IYKGMHLRRHGDIIKRTVG-GYI-----IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLV 657 (728)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~d-G~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~ 657 (728)
..||+|||+|++++| |++ +|+||.||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 129999999999999 997 899999999999999999999999996 9999999999998776666 8899
Q ss_pred EEEEEcC--CCCCCChHHHHHHHHHHHHHhcCCCc-ccceEEEc--CCCCCCCCchhhHHH
Q 004821 658 ICVVLKK--GFTSQPVDKLKMIFSKAIQRNLNPLF-KVSLVKIV--LEFPRTASNKLLRRV 713 (728)
Q Consensus 658 a~vv~~~--~~~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~t~~GKvdR~~ 713 (728)
++|++.+ +.. +...-.+.++++|+++|+.|+ +|..+.++ ++||+|+|||++|+.
T Consensus 379 a~v~~~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~ 437 (443)
T 2y4o_A 379 LAVELRSEAAAS--VTDGERAALARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVI 437 (443)
T ss_dssp EEEEECHHHHTT--CCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEE
T ss_pred EEEEECCccccc--chhhHHHHHHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEE
Confidence 9999875 321 111123345556667777775 88877777 599999999999864
No 34
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=5.6e-50 Score=440.73 Aligned_cols=328 Identities=18% Similarity=0.194 Sum_probs=259.2
Q ss_pred cCCC-CCeEEEEeccCCCCCCceEEecCchHHHHHHHHh---cccCCCCCCEEEeecccchhhhh-HHHHHHHHhCCEEE
Q 004821 352 YRPV-DSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGP-IILFSSFLSGAALA 426 (728)
Q Consensus 352 ~~~~-~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~-~~i~~~l~~G~~lv 426 (728)
..++ ++++||+|||||||+||||+++|+++.+.+.+.. ..++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 8999999999999999999999999977665543 34689999999999998755554 56788999999999
Q ss_pred EecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCC--CccceeeEEeeCCCCCcchHHHHHHhcCCCCeeccc
Q 004821 427 LYHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGL--DWTKIRSFASTGETSNVDDDLWLASKAYYKPIIECC 504 (728)
Q Consensus 427 ~~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~--~l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~Y 504 (728)
+.+ ..++..+++.|+++++|++.++|+++..|++....... ++++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAA-AGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCC-SCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCC-CCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 876 45789999999999999999999999999876443333 378999999999999999999998876 68999999
Q ss_pred cccccccc-cccCCCCCCCcccccCCCCCCceEEEEC-CCCCcCCCCCCcceeEEEecccCCCccccccccccccccccc
Q 004821 505 GGTELASS-YIQGSMLQPQAFGAFSTATMTTGFVILD-ELGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGM 582 (728)
Q Consensus 505 G~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld-~~~~~~p~g~~~iGel~v~~~y~~~~~~~~~~~~t~~~f~~~ 582 (728)
|+||+++. +..... ....+|.|.+++.++|+| ++|+++|.|+. |||+|... +...|
T Consensus 239 G~TE~~~~~~~~~~~----~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~-------------~~~~~--- 296 (436)
T 3qov_A 239 GMTEMNGPGVAFECQ----EQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTL-------------DREMM--- 296 (436)
T ss_dssp EEGGGTEEEEEEECT----TCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEES-------------SCCSS---
T ss_pred cchhhcCCeeEEecC----CCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEecc-------------CcCCc---
Confidence 99999543 222221 112366788899999999 78999999996 99999531 11122
Q ss_pred ccCCCccceecCCeEEEecCC------c---EEEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCc
Q 004821 583 PIYKGMHLRRHGDIIKRTVGG------Y---IIVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGP 653 (728)
Q Consensus 583 p~~~g~~~yrTGDl~~~~~dG------~---l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~ 653 (728)
| ..||+|||+|++++|| + ++|+||.||+||++|+||+|.|||++|. +||+|.+++|++.+++..+
T Consensus 297 ~----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~- 370 (436)
T 3qov_A 297 P----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ- 370 (436)
T ss_dssp C----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-
T ss_pred e----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-
Confidence 1 1299999999999998 5 6999999999999999999999999995 9999999999999887766
Q ss_pred eEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCC-cccceEEEcC--CCCCCCCchhhHH
Q 004821 654 EVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPL-FKVSLVKIVL--EFPRTASNKLLRR 712 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~-~~P~~i~~v~--~lP~t~~GKvdR~ 712 (728)
+.++++|+++ +.. .+...-.+.+++.|++.|+.| ++|..+++++ +||+|+ ||++|.
T Consensus 371 ~~l~a~v~~~-~~~-~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 371 DEMIVEVELS-DLS-TDNYIELEKIRRDIIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRV 429 (436)
T ss_dssp EEEEEEEEEC-TTC-CCCHHHHHHHHHHHHHHHHHHHSSCCEEEEECTTCCC--------CE
T ss_pred cEEEEEEEEc-Ccc-ccchhhHHHHHHHHHHHHHHhcCCceEEEEeCCCcccCcC-CcceEE
Confidence 8999999998 544 332222233444555666666 8899999999 999999 999985
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=2.5e-48 Score=427.67 Aligned_cols=330 Identities=18% Similarity=0.164 Sum_probs=264.2
Q ss_pred cCCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHh---cccCCCCCCEEEeeccc-chhhhhHHHHHHHHhCCEEEE
Q 004821 352 YRPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNL-GWVMGPIILFSSFLSGAALAL 427 (728)
Q Consensus 352 ~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~i~~~l~~G~~lv~ 427 (728)
..+++++++|+|||||||+||||+++|+++.+...+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34678999999999999999999999999877664433 35789999999999998 567677778899999999987
Q ss_pred ecCCCChhhHHHHHHHcCCeEEecchHHHHHHHccCcCCCCC--ccceeeEEeeCCCCCcchHHHHHHhcCCCCeecccc
Q 004821 428 YHGSPLERSFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLD--WTKIRSFASTGETSNVDDDLWLASKAYYKPIIECCG 505 (728)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~--l~~Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~n~YG 505 (728)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 663 58899999999999999999999999998754333333 47999999999999999999998776 689999999
Q ss_pred ccccccc-cccCCCCCCCcccccCCCCCCceEEEECC-CCCcCCCCCCcceeEEEecccCCCcccccccccccccccccc
Q 004821 506 GTELASS-YIQGSMLQPQAFGAFSTATMTTGFVILDE-LGVPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMP 583 (728)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~~~vld~-~~~~~p~g~~~iGel~v~~~y~~~~~~~~~~~~t~~~f~~~p 583 (728)
+||+++. +....... ...++.|.+++.++|+|+ +|+++|.|+. |||+|.. .|.+.| |
T Consensus 244 ~TE~~g~~~~~~~~~~---~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~-------------~t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVET---KDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTS-------------LTKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTTT---CSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEE-------------SSCSSS---C
T ss_pred chhhcCCeeEEecCCC---CCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEec-------------CCcCCc---h
Confidence 9998432 22222211 112556778999999995 5999999996 9999853 112223 1
Q ss_pred cCCCccceecCCeEEEec-CCcE-----EEEeecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEE
Q 004821 584 IYKGMHLRRHGDIIKRTV-GGYI-----IVQGRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLV 657 (728)
Q Consensus 584 ~~~g~~~yrTGDl~~~~~-dG~l-----~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~ 657 (728)
..||+|||+|++++ ||++ +|+||.||+||++|++|+|.|||++|. +||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12999999999999 6996 899999999999999999999999995 9999999999998876666 8899
Q ss_pred EEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCc-ccceEEEc--CCCCCCCCchhhHHH
Q 004821 658 ICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLF-KVSLVKIV--LEFPRTASNKLLRRV 713 (728)
Q Consensus 658 a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~t~~GKvdR~~ 713 (728)
++|++.++.. .+ ..-.+.++++|+++|+.|+ +|..+.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~~~~-~~-~~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCPETA-PD-TAAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCTTTT-TC-HHHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECCCcc-ch-hhhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999876542 11 1223345556777788874 88888888 5999999 9999863
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.98 E-value=2.6e-32 Score=293.08 Aligned_cols=237 Identities=15% Similarity=0.052 Sum_probs=180.6
Q ss_pred CCCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHh---cccCCCCCCEEEeeccc-chhhhhHHHHHHHHhCCEEEEe
Q 004821 353 RPVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNL-GWVMGPIILFSSFLSGAALALY 428 (728)
Q Consensus 353 ~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~i~~~l~~G~~lv~~ 428 (728)
.+++++++|+|||||||+||||+++|+++.+.+.+.. ..++++++|++++..|+ .|+.++...+.++..|+ +++.
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~~ 166 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFFS 166 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEEC
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEEC
Confidence 4678999999999999999999999999998888543 55678999999999999 89899888888899999 4444
Q ss_pred cCCCChh-----------------------hHHHHHHHcCCeEEecchHHHHHHHccCcCCCCCccceeeEEeeCCCCCc
Q 004821 429 HGSPLER-----------------------SFGKFVQDSGVSVLGTVPSLVKAWKNTNCLQGLDWTKIRSFASTGETSNV 485 (728)
Q Consensus 429 ~~~~~~~-----------------------~l~~~i~~~~vt~l~~~P~~l~~l~~~~~~~~~~l~~Lr~v~~~Ge~l~~ 485 (728)
. ..++. .++++|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 167 ~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~ 245 (369)
T 3hgu_A 167 I-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNL 245 (369)
T ss_dssp C-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCCH
T ss_pred c-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCCH
Confidence 3 34555 77779999999999999999999987643223457899999999999999
Q ss_pred chHHHHH-HhcCCCCeeccccccccccccccCCCCCCCcccccCCC------CCCceEEEECC-CCCcCCCCCCcceeEE
Q 004821 486 DDDLWLA-SKAYYKPIIECCGGTELASSYIQGSMLQPQAFGAFSTA------TMTTGFVILDE-LGVPYPDDQPCVGEVG 557 (728)
Q Consensus 486 ~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~~~vld~-~~~~~p~g~~~iGel~ 557 (728)
++.+++. +.+++++++|.||+||+++++..+.. .++|+| ++++.++|+|+ +|+++|.|+. |||+
T Consensus 246 ~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~------~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl~ 317 (369)
T 3hgu_A 246 DEIKFIASEILPDCEFSASYGSTSALGVSRSLLI------TSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNVI 317 (369)
T ss_dssp HHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB------CTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEEE
T ss_pred HHHHHHHHHhCCCcEEEcccCchhhhcceecccc------ccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEEE
Confidence 9999999 88778999999999999865432211 158999 99999999997 8999999996 9999
Q ss_pred EecccCCCcccccccccccccccccccCCCccceecCCeEEEecC---------CcEEEEeecCCccccCce
Q 004821 558 LFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVG---------GYIIVQGRADDTMNLGGI 620 (728)
Q Consensus 558 v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~d---------G~l~~~GR~dd~ik~~G~ 620 (728)
|... +...|.. .|+|||++++.+. ..+..++|.|+++||.|.
T Consensus 318 vt~l-------------~~~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 318 VTHL-------------SPWAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEE-------------ETTEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEc-------------Ccccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 8431 1112211 5999999988553 246778999999999885
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.60 E-value=8.6e-16 Score=132.87 Aligned_cols=96 Identities=21% Similarity=0.319 Sum_probs=73.9
Q ss_pred eecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEEEEcCCCCCCCh---HHHHHHHHHHHHHh
Q 004821 609 GRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPV---DKLKMIFSKAIQRN 685 (728)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~---~~l~~~l~~~l~~~ 685 (728)
.|.|||||++|+||+|.|||++|. +||+|.+++|++.+++.++ +.++++|+..++.. .+. +++.++++++++..
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~~~~-~~~~~~~~l~~~i~~~l~~~ 77 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQLFT-DDYGRLQALTREITRQLKDE 77 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECTTCC-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEeeccc-cccchhhhhHHHHHHHHHHH
Confidence 489999999999999999999996 9999999999999988877 89999999987654 333 34555666666555
Q ss_pred cCCCcccceEEEc--CCCCCCCCchhhH
Q 004821 686 LNPLFKVSLVKIV--LEFPRTASNKLLR 711 (728)
Q Consensus 686 Lp~~~~P~~i~~v--~~lP~t~~GKvdR 711 (728)
+ .+|..+.++ ++||+| +||++|
T Consensus 78 ~---gv~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 78 I---LVTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp H---SSCCEEEEECTTCSCCC----CCC
T ss_pred h---CCccceEEEcCCeecCC-CCCcch
Confidence 4 244456666 489999 799877
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.57 E-value=4.8e-15 Score=127.88 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=75.9
Q ss_pred eecCCccccCceeechhhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEEEEcCCCCC---CChHHHHHHHHHHHHHh
Q 004821 609 GRADDTMNLGGIKTSSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTS---QPVDKLKMIFSKAIQRN 685 (728)
Q Consensus 609 GR~dd~ik~~G~ri~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~vv~~~~~~~---~~~~~l~~~l~~~l~~~ 685 (728)
||.||+||++|++|+|.|||++|. +||+|.++++++.+++.++ +.++++|++ ++... .+.+++.++|++++++.
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~-~~p~v~~~~~v~v~~~~~~-e~l~~~ve~-~~~~~~~~~~~~~l~~~i~~~l~~~ 77 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVEL-SQLFTDDYGRLQALTREITRQLKDE 77 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEE-CTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHH-hCCCcCCcEEEEEEcCCCc-eEEEEEEEE-cCccccchhHHHHHHHHHHHHHHHh
Confidence 899999999999999999999996 8999999988888877665 899999998 55320 13466788888888776
Q ss_pred cCCCcccceEEEcC--CCCCCCCchhhHH
Q 004821 686 LNPLFKVSLVKIVL--EFPRTASNKLLRR 712 (728)
Q Consensus 686 Lp~~~~P~~i~~v~--~lP~t~~GKvdR~ 712 (728)
+. +|..+.+++ +||+| +||+.|.
T Consensus 78 ~~---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 78 IL---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HS---SCCEEEEECTTCSCCC----CCCE
T ss_pred hC---CceEEEEECCCCccCC-CCceEEE
Confidence 53 334788887 99999 9999873
No 39
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.83 E-value=8.4e-08 Score=105.71 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=52.1
Q ss_pred ceecCCeEEEec----CCcEEEEeecCCccccCceeechhhHHHHHccCC-----C--ceeeeeEEeecCCCCCceEEEE
Q 004821 590 LRRHGDIIKRTV----GGYIIVQGRADDTMNLGGIKTSSVEIERVCDGAD-----E--SILETAAISVSPAGGGPEVLVI 658 (728)
Q Consensus 590 ~yrTGDl~~~~~----dG~l~~~GR~dd~ik~~G~ri~~~eIE~~l~~~~-----p--~V~~a~vv~~~~~~~g~~~l~a 658 (728)
-||+||+++++. ..++.|+||.+++++++|.+|...+||++|.+.. . .|.|-.+..-.. ... ..-+.
T Consensus 411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~-~~p-~Hyv~ 488 (609)
T 4b2g_A 411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTK-TIP-GHYVI 488 (609)
T ss_dssp SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECS-SSS-CEEEE
T ss_pred heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCC-CCC-CcEEE
Confidence 399999999874 5789999999999999999999999999986222 2 355655543222 222 35566
Q ss_pred EEEEc
Q 004821 659 CVVLK 663 (728)
Q Consensus 659 ~vv~~ 663 (728)
|+.+.
T Consensus 489 ~wEl~ 493 (609)
T 4b2g_A 489 YWELL 493 (609)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 66664
No 40
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.80 E-value=4.8e-08 Score=107.52 Aligned_cols=133 Identities=14% Similarity=0.101 Sum_probs=80.4
Q ss_pred ccc---eeeEEeeCCCCCcchHHHHHHhcCCCCee-ccccccccccccccCCCCCCCcccccCCCCCCc-eEEEEC--CC
Q 004821 470 WTK---IRSFASTGETSNVDDDLWLASKAYYKPII-ECCGGTELASSYIQGSMLQPQAFGAFSTATMTT-GFVILD--EL 542 (728)
Q Consensus 470 l~~---Lr~v~~~Ge~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~-~~~vld--~~ 542 (728)
.|+ +..++.||- ..-...++...++.+++ ..|+.||+-..+-..+...+...+ ...+++. -...++ +.
T Consensus 296 WPnl~~l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~--~~L~~~~~ffEFip~~~~ 370 (581)
T 4eql_A 296 WPNTKYIETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCKPEDVS--YTFMPNMSYFEFIPMDGG 370 (581)
T ss_dssp STTCCEEEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSCGGGCC--EEECTTSSEEEEEECSTT
T ss_pred CCCCcEEEEEcCCCh---HHHHHHHHHHcCCCccccCccccccceeeeccCCCCCcccCc--eeecCCcEEEEEEecccc
Confidence 456 666667772 22245555555677877 899999964322111111111111 1123333 223443 21
Q ss_pred --CC-----cCCCCCCcceeEEEecccCCCcccccccccccccccccccCCCccceecCCeEEEec----CCcEEEEeec
Q 004821 543 --GV-----PYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTV----GGYIIVQGRA 611 (728)
Q Consensus 543 --~~-----~~p~g~~~iGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~----dG~l~~~GR~ 611 (728)
.+ .|..|+. +|+.|+.. + |---||+||++++.. ..++.|+||.
T Consensus 371 ~~~~~v~l~eVe~G~~--YelViTt~--~----------------------GL~RYr~GD~v~v~~f~~~~p~i~f~gR~ 424 (581)
T 4eql_A 371 DKNDVVDLEDVKLGCT--YEPVVTNF--A----------------------GLYRMRVGDIVLVTGFYNNAPQFKFVRRE 424 (581)
T ss_dssp CCSSCEEGGGCCTTCE--EEEEEECS--S----------------------SCCSEECCEEEEEEEEETTEEEEEEEEET
T ss_pred CCCcEeCHHHcCCCce--EEEEEeec--c----------------------ceeeEEcCCEEEEcccCCCCcEEEEEEec
Confidence 12 2335554 77777321 0 111399999999976 5689999999
Q ss_pred CCccccCceeechhhHHHHHcc
Q 004821 612 DDTMNLGGIKTSSVEIERVCDG 633 (728)
Q Consensus 612 dd~ik~~G~ri~~~eIE~~l~~ 633 (728)
+++++++|.+|...+||++|.+
T Consensus 425 ~~~l~~~Gekl~~~~v~~al~~ 446 (581)
T 4eql_A 425 NVVLSIDSDKTNEEDLFKAVSQ 446 (581)
T ss_dssp TEEECSSSCCEEHHHHHHHHHH
T ss_pred CCEEEeeeeECCHHHHHHHHHH
Confidence 9999999999999999999963
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.77 E-value=1.5e-07 Score=103.25 Aligned_cols=163 Identities=16% Similarity=0.094 Sum_probs=91.2
Q ss_pred ccceeeE--EeeCCCCCcchHHHHHHhcCCCCee-ccccccccccccccCCCCCCCcccccCCCCCCce-EEEE--CCCC
Q 004821 470 WTKIRSF--ASTGETSNVDDDLWLASKAYYKPII-ECCGGTELASSYIQGSMLQPQAFGAFSTATMTTG-FVIL--DELG 543 (728)
Q Consensus 470 l~~Lr~v--~~~Ge~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~-~~vl--d~~~ 543 (728)
.|+|+.| +++|. + ..-...++...++.+++ ..|+.||+-+.+-..+...+... ....+++.. ...+ |+.+
T Consensus 301 WPnl~~i~~~~~G~-~-~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~~~~~--~~~L~p~~~ffEFiP~~~~~ 376 (581)
T 4epl_A 301 FPNAKYVYGIMTGS-M-EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEA--TFAVIPNLGYFEFLPVSETG 376 (581)
T ss_dssp CTTCCCEEEECSGG-G-GGGHHHHHHHHTTSCEEECCEEETTEEEEECCCTTSCTTTC--CEEECTTSCEEEEEEC----
T ss_pred CCCCceEEEEeCCC-h-HHHHHHHHHHcCCCccccCceeccceeeeeecCCCCCcccc--ceeecCCcEEEEEEeccccc
Confidence 4666532 34442 2 22234555555677877 99999997433222111111110 111233331 1223 3222
Q ss_pred ---------CcCCCCCCcceeEEEecccCCCcccccccccccccccccccCCCccceecCCeEEEecC----CcEEEEee
Q 004821 544 ---------VPYPDDQPCVGEVGLFPLYLGATDRLLNADHEEVYFSGMPIYKGMHLRRHGDIIKRTVG----GYIIVQGR 610 (728)
Q Consensus 544 ---------~~~p~g~~~iGel~v~~~y~~~~~~~~~~~~t~~~f~~~p~~~g~~~yrTGDl~~~~~d----G~l~~~GR 610 (728)
..|..|+. +||.|+..- |---||+||++++..- ..+.|+||
T Consensus 377 ~~~~~~v~l~eve~G~~--YelviTt~~------------------------GL~RYr~GD~v~v~g~~~~~p~~~~~gR 430 (581)
T 4epl_A 377 EGEEKPVGLTQVKIGEE--YEVVITNYA------------------------GLYRYRLGDVVKVIGFYNNTPQLKFICR 430 (581)
T ss_dssp ---CCCEEGGGCCTTCE--EEEEEESTT------------------------SCSSEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCceeeHHHcCCCCe--EEEEEeecc------------------------ceeeEEcCCEEEEecccCCCcEEEEEee
Confidence 23556664 888873210 1113999999998742 57999999
Q ss_pred cCCccccCceeechhhHHHHHccC-----CC--ceeeeeEEeecCCCCCceEEEEEEEEcC
Q 004821 611 ADDTMNLGGIKTSSVEIERVCDGA-----DE--SILETAAISVSPAGGGPEVLVICVVLKK 664 (728)
Q Consensus 611 ~dd~ik~~G~ri~~~eIE~~l~~~-----~p--~V~~a~vv~~~~~~~g~~~l~a~vv~~~ 664 (728)
.|+++++.|.++...+||++|.+. .. .|.|-.+..-. .... .+-+.|+.+..
T Consensus 431 ~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~-~~~p-~hyv~~wE~~~ 489 (581)
T 4epl_A 431 RNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDV-STDP-GHYAIFWEISG 489 (581)
T ss_dssp TTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEEC-SSSS-CEEEEEEEESS
T ss_pred cCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCC-CCCC-CcEEEEEeecC
Confidence 999999999999999999998521 22 36666554422 2222 35566666643
No 42
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.67 E-value=1.6e-10 Score=129.33 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=109.9
Q ss_pred hHHHHcCCCchhhHHHHHHHHHHhhhcCCC-CchhhhHHHHHHHhcCCCCCCCCchhHHHHHhhcccccCCCC----CCc
Q 004821 11 VDLVKVGLKVDEAEDFDNILKQLIDGSKGL-DPKEIWKELVARKVFKPWHPHGLHQLLYYSVYNDWDASINGP----PLY 85 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~~----~~~ 85 (728)
.|.+++++.+++..+|.++++++++...++ +||+|||++ |++.+++.+..+..|+ |+++|++++..... ...
T Consensus 372 ~n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~-i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~ 448 (520)
T 2jgp_A 372 VNTLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEE-LVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECT 448 (520)
T ss_dssp CEEEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHH-HHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEE
T ss_pred eeeeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHH-HHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCce
Confidence 577888999999999999999999987666 999999999 9999998888778888 99999998754322 111
Q ss_pred C--CCCchh--hccCchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccceecccee
Q 004821 86 W--FPSLDQ--SKLTNLGHAMEIHGPKFLGAM-YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFHEAPKC 153 (728)
Q Consensus 86 ~--~~~~~~--~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~~~~~~ 153 (728)
+ .+.... ..+|||++.+.+.++++...+ |++ ++|++++|++|.++|.++|++++.+|+.++.+
T Consensus 449 ~~~~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l~~~p~~~l~~ 516 (520)
T 2jgp_A 449 LAPFMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASIVQNPHIRLGE 516 (520)
T ss_dssp EEECSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHHHHCTTCBGGG
T ss_pred eEEeecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHhCccCchhh
Confidence 1 111122 678999998888888999999 999 99999999999999999999987766655543
No 43
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=98.25 E-value=8.6e-09 Score=114.32 Aligned_cols=134 Identities=7% Similarity=-0.061 Sum_probs=97.3
Q ss_pred hHHHHcCCCchh--hHHHHHHHHHHhhhcCCC-CchhhhHHHHHHH---hcCCCCCCCCchhHHHHHhhcccccCCCCCC
Q 004821 11 VDLVKVGLKVDE--AEDFDNILKQLIDGSKGL-DPKEIWKELVARK---VFKPWHPHGLHQLLYYSVYNDWDASINGPPL 84 (728)
Q Consensus 11 ~~~~~~~~~~~~--~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~---~l~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 84 (728)
.|.+++++..++ ..+|.++++++++...++ +| ++||++ |++ .|++.+..+..|+ |+++|++++.......
T Consensus 297 ~n~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~-i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~ 372 (493)
T 4hvm_A 297 TDRVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHD-VVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSL 372 (493)
T ss_dssp EEEEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHH-HHHHHHHTTSCBTTBTTGG--GCEEECC---------
T ss_pred eceeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHH-HHHHHhhhCcccCCCCCcc--eeEEEEEEecCCcccc
Confidence 577888888888 899999999999986666 99 999999 999 8988888888888 9999999864432210
Q ss_pred ------------cCCCCc----------------hhhccCc---hHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCH
Q 004821 85 ------------YWFPSL----------------DQSKLTN---LGHAMEIHGPKFLGAM-YKDPFTSFSLFQKFTVEHP 132 (728)
Q Consensus 85 ------------~~~~~~----------------~~~~~~d---l~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~ 132 (728)
...+.. ...++|| +.+.+.+.++++...+ |+. ++| +++|++|
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l 446 (493)
T 4hvm_A 373 TRGERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSAL 446 (493)
T ss_dssp -----------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHH
T ss_pred ccccccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHH
Confidence 000000 1124677 8888888889999999 999 999 9999999
Q ss_pred HHHHHHHHhhcccceeccceec
Q 004821 133 EAYWEIVLKEISVKFHEAPKCI 154 (728)
Q Consensus 133 ~~~~~~~l~~~~~~~~~~~~~~ 154 (728)
.++|.++|++++.+|+.++.++
T Consensus 447 ~~~~~~~L~~~~~~p~~~l~~l 468 (493)
T 4hvm_A 447 LDGLDAAMAQAVADPSAPLPHS 468 (493)
T ss_dssp HHHHHHHHHHHHHCTTSBCCC-
T ss_pred HHHHHHHHHHHHhCCCCccccC
Confidence 9999999999988888877765
No 44
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=98.19 E-value=7.5e-09 Score=112.82 Aligned_cols=138 Identities=7% Similarity=-0.068 Sum_probs=105.1
Q ss_pred hHHHHcCCCchhhHHHHHHHHHHhhhcCCC-CchhhhHHHHHHHhcCCCCCCCCchhHHHHHhhcccccCCC--CCCcC-
Q 004821 11 VDLVKVGLKVDEAEDFDNILKQLIDGSKGL-DPKEIWKELVARKVFKPWHPHGLHQLLYYSVYNDWDASING--PPLYW- 86 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~-~hq~~Pf~~~lv~~l~~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~- 86 (728)
.|.+++++.+++..+|.++++++++...++ +||++||++ |++.++..+ ...|+ |+++|++++.... .....
T Consensus 276 ~n~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~-i~~~l~~~~--~~~~l--f~~~~~~~~~~~~~~~~~~~~ 350 (436)
T 1l5a_A 276 VNSLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQ-IEQDQGLNA--EQSYF--MSPFINILPFESPHFADCQTE 350 (436)
T ss_dssp CEEEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHH-HHHHTTCCT--TCCBC--CCSEEEEECCCCCCCTTCEEE
T ss_pred EEEEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHH-HHHHhcccc--cCCCc--cceEEEeeccCccccCCCeeE
Confidence 567889999999999999999999997766 999999999 999997654 34566 7888888754432 11000
Q ss_pred -CCCchhhccCchHHHHH-HhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhcccc---eeccceecccCCC
Q 004821 87 -FPSLDQSKLTNLGHAME-IHGPKFLGAM-YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVK---FHEAPKCILDRTD 159 (728)
Q Consensus 87 -~~~~~~~~~~dl~~~~~-~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~---~~~~~~~~l~~~~ 159 (728)
........+ ||.+.+. ..++++...+ |+. ++|++++|++|.++|..+|++++.. |+.++.++|.+.+
T Consensus 351 ~~~~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~~~~~~p~~~l~~lL~~~~ 423 (436)
T 1l5a_A 351 LKVLASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLLARFQQVEQDVARLLAEPA 423 (436)
T ss_dssp EEEEEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHSBC
T ss_pred EEecCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHHhccCCCcccHHHHhCCHH
Confidence 011112233 7877776 4567888899 999 9999999999999999999999888 8888777755443
No 45
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=97.22 E-value=3.1e-06 Score=92.87 Aligned_cols=126 Identities=11% Similarity=0.134 Sum_probs=88.7
Q ss_pred hHHHHcCCCchhhHHHHHHHHHHhhhcCCCCchhhhHHHHHHHhcCCC-----CCCCCchhHHHHHhhcccccCCC----
Q 004821 11 VDLVKVGLKVDEAEDFDNILKQLIDGSKGLDPKEIWKELVARKVFKPW-----HPHGLHQLLYYSVYNDWDASING---- 81 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~f~~~l~~~~~~~~~~~hq~~Pf~~~lv~~l~~~-----~~~~~~~~~~f~~~~~~~~~~~~---- 81 (728)
.|.+++++.+++..+|.++++++++...++.||++||+. + +.+... +.....| +++|++......
T Consensus 307 ~n~lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~~~~~p----~~~f~~~~~~~~~~~~ 380 (466)
T 2xhg_A 307 TSQYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYDI-L-KHVTLPENRGSLSFRVQP----EVTFNYLGQFDADMRT 380 (466)
T ss_dssp CEEEEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHHH-H-HHTSCGGGSTTCCCCCCC----SEEEEEEEECCTTCSS
T ss_pred eeeccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccce-e-eecccccccccccccCCC----eEEEeecCcccccccC
Confidence 566788888888999999999999987777999999996 4 666543 2223333 255666532211
Q ss_pred CCCcC--CCC-------------chhhccCchHHHHHHhCCcccccc-cCCCCCCHHHHHHHHhhCHHHHHHHHHhhccc
Q 004821 82 PPLYW--FPS-------------LDQSKLTNLGHAMEIHGPKFLGAM-YKDPFTSFSLFQKFTVEHPEAYWEIVLKEISV 145 (728)
Q Consensus 82 ~~~~~--~~~-------------~~~~~~~dl~~~~~~~~~~~~~~~-y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~ 145 (728)
..... .+. ......++|.+.+...++++.+.+ |++ ++|++++|++|.++|.++|++++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l~~ 455 (466)
T 2xhg_A 381 ELFTRSPYSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAIIA 455 (466)
T ss_dssp SSCEECTTCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CceecccccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHHHH
Confidence 11100 000 011236788877766788899999 999 999999999999999999999865
Q ss_pred ce
Q 004821 146 KF 147 (728)
Q Consensus 146 ~~ 147 (728)
.+
T Consensus 456 ~~ 457 (466)
T 2xhg_A 456 HC 457 (466)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 46
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=91.84 E-value=0.0026 Score=68.14 Aligned_cols=109 Identities=8% Similarity=-0.106 Sum_probs=69.5
Q ss_pred hhHHHHHHHHHHhhhcCCC-Cchhhh-----HHHHHHHhcCCCCCCCCchhHHHHHhh-cccccCCCC---CCcCC--CC
Q 004821 22 EAEDFDNILKQLIDGSKGL-DPKEIW-----KELVARKVFKPWHPHGLHQLLYYSVYN-DWDASINGP---PLYWF--PS 89 (728)
Q Consensus 22 ~~~~f~~~l~~~~~~~~~~-~hq~~P-----f~~~lv~~l~~~~~~~~~~~~~f~~~~-~~~~~~~~~---~~~~~--~~ 89 (728)
...+|.++++++++...++ +||++| |++ +++.+++. .++ ++ +| |+....... ..... ..
T Consensus 296 ~~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~-i~~~~~~~--~pl-~~-----~~~n~~~~~~~~~~~~~~~~~~~~ 366 (422)
T 1q9j_A 296 PNTDIVDLASDIVATLRADLANGVIQQSGLHFGT-AFEGTPPG--LPP-LV-----FCTDATSFPTMRTPPGLEIEDIKG 366 (422)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGG-GGGCCCSS--SCC-CE-----EEECCCCCCSCCCCTTCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCeeeecccchHH-HhcccCCC--CCc-eE-----EEecCCcCCCCCCCCCceeEeeec
Confidence 3457888888888886666 999995 999 99988743 233 22 22 443221111 11000 00
Q ss_pred chh-hccCchHHH-HHHhCCcccccccCCCCCCHHHHHHHHhhCHHHHHHHHHhhccccee
Q 004821 90 LDQ-SKLTNLGHA-MEIHGPKFLGAMYKDPFTSFSLFQKFTVEHPEAYWEIVLKEISVKFH 148 (728)
Q Consensus 90 ~~~-~~~~dl~~~-~~~~~~~~~~~~y~~~~~~~~lf~~~ti~~~~~~~~~~l~~~~~~~~ 148 (728)
... ..++|+.+. +...++++...+|++ + .+++++.++|.++|++++.++.
T Consensus 367 ~~~~~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l~~~~~ 418 (422)
T 1q9j_A 367 QFYCSISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTVPSEYG 418 (422)
T ss_dssp EECCBSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHTTTSCC
T ss_pred ccccCCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHhhcCcc
Confidence 111 345677766 556677777666887 5 8899999999999999865443
No 47
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=85.70 E-value=6 Score=41.90 Aligned_cols=100 Identities=12% Similarity=0.117 Sum_probs=75.8
Q ss_pred CCCCceEEEEecCCCCCCC--ceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCcEEEe
Q 004821 188 KEDDSVAVVWREDRCDDSS--VNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMT--VHAVIIYLAIILAGYVVVS 262 (728)
Q Consensus 188 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s--~~~vva~lA~lkaGa~~vp 262 (728)
..++.+|.+....+ .+|. ...+|.+.+...+..+++.+... +.++|++...++-+ ...+..+++.+..|+..++
T Consensus 87 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35577776654433 3333 34689999998888888877777 99999999988853 4445567888999999998
Q ss_pred cCCCCCHHHHHHHHHhcCeeEEEeccc
Q 004821 263 IADSFAAREIATRLRVSKAKGIFTQDF 289 (728)
Q Consensus 263 l~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (728)
+++ ...+++...+++.++.+++....
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHH
Confidence 765 47889999999999999987764
No 48
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=84.61 E-value=5.5 Score=42.18 Aligned_cols=97 Identities=12% Similarity=0.045 Sum_probs=76.0
Q ss_pred CceEEEEecCCCCCCC--ceeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCC--CHHHHHHHHHHHHhCcEEEecCC
Q 004821 191 DSVAVVWREDRCDDSS--VNRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPM--TVHAVIIYLAIILAGYVVVSIAD 265 (728)
Q Consensus 191 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~--s~~~vva~lA~lkaGa~~vpl~p 265 (728)
+.+|.+....+ .+|. ...+|.+.+...+..+++.+... +.++|++..+++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSG-TTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSG-TTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSC-SSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCC-cCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 77887665543 3333 33689999999888888888888 9999999998874 44555677889999999998765
Q ss_pred CCCHHHHHHHHHhcCeeEEEeccc
Q 004821 266 SFAAREIATRLRVSKAKGIFTQDF 289 (728)
Q Consensus 266 ~~p~~~l~~~l~~~~~~~il~~~~ 289 (728)
. ..+++...+++.++.+++....
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHH
Confidence 4 6788899999999999887764
No 49
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=84.05 E-value=6.8 Score=41.52 Aligned_cols=99 Identities=13% Similarity=0.103 Sum_probs=75.1
Q ss_pred CCCceEEEEecCCCCCCCc--eeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCC--HHHHHHHHHHHHhCcEEEec
Q 004821 189 EDDSVAVVWREDRCDDSSV--NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMT--VHAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s--~~~vva~lA~lkaGa~~vpl 263 (728)
.++.+|.+....+ .+|.. ..+|.+.+...+..+++.+... +.++|++..+++-+ ...+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4566775544432 33433 3689999998888888877777 99999999988863 44455678889999999987
Q ss_pred CCCCCHHHHHHHHHhcCeeEEEeccc
Q 004821 264 ADSFAAREIATRLRVSKAKGIFTQDF 289 (728)
Q Consensus 264 ~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (728)
++. ..+++...+++.++.+++....
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 664 7888999999999999987764
No 50
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=80.78 E-value=3.9 Score=44.91 Aligned_cols=100 Identities=11% Similarity=-0.005 Sum_probs=73.4
Q ss_pred CCCeEEEEeccCCCCCCceEEecCchHHHHHHH---HhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecCC
Q 004821 355 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS 431 (728)
Q Consensus 355 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~~ 431 (728)
|+.+|++.+..+.++ ..+|.+.+...+.. .....++.++|++...++-+..+- ..+|+++..|+..+..+..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFF-MPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHH-HHHHHHHHcCCEEeecCCc
Confidence 455565544444433 36888877554433 334568999999998888776543 4467899999999998877
Q ss_pred CChhhHHHHHHHcCCeEEecchHHHHHH
Q 004821 432 PLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (728)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (728)
...+++...++..++.++++.+..+..+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7888999999999999999988766554
No 51
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=78.05 E-value=11 Score=41.27 Aligned_cols=103 Identities=8% Similarity=-0.041 Sum_probs=74.3
Q ss_pred CCCCeEEEEeccC-CCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEec
Q 004821 354 PVDSVINILFSSG-TTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429 (728)
Q Consensus 354 ~~~~~a~i~~TSG-TTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~ 429 (728)
.|+.+|++....+ ..+. .-.+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYV-MTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHhCCEEEccC
Confidence 4677887654321 1122 24578877654443 3334568999999998888776544 34678999999999988
Q ss_pred CCCChhhHHHHHHHcCCeEEecchHHHHHH
Q 004821 430 GSPLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (728)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (728)
.....+++...+++.+++++.+.+.....+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 777888999999999999999987765544
No 52
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=77.23 E-value=8.2 Score=41.80 Aligned_cols=95 Identities=14% Similarity=-0.025 Sum_probs=72.7
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHHH---hcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. .+-.+|.+.+...+... ....++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMI-ELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEecCC
Confidence 567788764 12468888875544433 34568999999998888776543 446789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecchHHHHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSLVKA 458 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (728)
....+++...+++.++.++...+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7788899999999999999998776554
No 53
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=76.95 E-value=12 Score=40.85 Aligned_cols=100 Identities=14% Similarity=-0.018 Sum_probs=73.4
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++....+ .+-.+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHL-EAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHhcCcEEEecCc
Confidence 4577776543211 245688887755443 3334578999999998888776544 346788999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecchHHHHHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (728)
....+++...+++.++.++++.+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 77788999999999999999988765543
No 54
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=75.22 E-value=8.8 Score=41.87 Aligned_cols=97 Identities=15% Similarity=0.075 Sum_probs=71.7
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. +.+| -.+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 35 ~p~~~a~~~---~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLIN---GANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFV-LAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEE---CCCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCEEeccCC
Confidence 567888653 2222 3578887754443 3334578999999998888776543 446789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecchHHHHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSLVKA 458 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (728)
...++++...+++.++.++...+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 7788899999999999999987755443
No 55
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=75.11 E-value=13 Score=40.85 Aligned_cols=101 Identities=10% Similarity=-0.020 Sum_probs=73.3
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHHH---hccc-CCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEec
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEA---WGHI-DMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~---~~~~-~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~ 429 (728)
.|+.+|++.... .| ....+|.+.+...+... .... ++.++|++...++-+..+- ..+|+++..|+..+..+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWW-LVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCeEEEecC
Confidence 567778765421 12 23578888775544333 2334 8999999998888776544 34678999999999888
Q ss_pred CCCChhhHHHHHHHcCCeEEecchHHHHHH
Q 004821 430 GSPLERSFGKFVQDSGVSVLGTVPSLVKAW 459 (728)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~~l~~l 459 (728)
....++++...+++.++.++++.+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 777788999999999999999887765544
No 56
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=74.04 E-value=15 Score=39.62 Aligned_cols=98 Identities=8% Similarity=-0.033 Sum_probs=70.6
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHH---HhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++.. .+ +..+|++.+...+.. .....++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 15 ~p~~~a~~~~---~~----~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---AR----GLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVV-IAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---TT----TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---CC----CceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCC
Confidence 4677777642 11 356888877554433 334568999999998888776543 446789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEec--chHHHHHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGT--VPSLVKAW 459 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~--~P~~l~~l 459 (728)
...++++...+++.+++.+.. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 777889999999999999888 55554443
No 57
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=72.76 E-value=20 Score=38.09 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=74.0
Q ss_pred CCCCeEEEEecc--CCCCCCceEEecCchHHHHHHHHh---cccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEe
Q 004821 354 PVDSVINILFSS--GTTGEPKAIPWTQLSPIRCAAEAW---GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALY 428 (728)
Q Consensus 354 ~~~~~a~i~~TS--GTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~ 428 (728)
.|+.+|++.... +.+| ....+|.+.+...+.... ...+. ++|++...++-+..+- ..+|+++..|+..+..
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~-~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYV-VAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHH-HHHHHHHHhCcEEEee
Confidence 568888765542 2222 236788888765444333 34565 8999998887776543 4467899999999888
Q ss_pred cC---CCChhhHHHHHHHcCCeEEecchHHHHHHHcc
Q 004821 429 HG---SPLERSFGKFVQDSGVSVLGTVPSLVKAWKNT 462 (728)
Q Consensus 429 ~~---~~~~~~l~~~i~~~~vt~l~~~P~~l~~l~~~ 462 (728)
+. ....+++...+++.++.+++..+.....+...
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 65 33467899999999999999998877766543
No 58
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=71.25 E-value=18 Score=39.11 Aligned_cols=95 Identities=11% Similarity=-0.009 Sum_probs=70.7
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++.. | +...+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFC-CLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHH-HHHHHHHHhCcEEEecCc
Confidence 4677777642 1 234688887755443 3334568999999998888776544 346789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecchHHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSLV 456 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l 456 (728)
....+++...+++.++.++...+...
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 126 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSA 126 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchH
Confidence 77888999999999999998776543
No 59
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=71.02 E-value=17 Score=40.02 Aligned_cols=95 Identities=9% Similarity=0.034 Sum_probs=71.2
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++.... .| ....+|.+.+...+. ......++.++|++...++-+..+. ..+|+++..|+..+..+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~-~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFW-YCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHH-HHHHHHHhCCEEEEeCCc
Confidence 578888876532 12 245788887754443 3334578999999998888776543 346788999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEecch
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
...++++...+++.++.++.+.+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 77888999999999999988754
No 60
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=70.52 E-value=18 Score=39.68 Aligned_cols=95 Identities=13% Similarity=-0.021 Sum_probs=70.9
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHH---HhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. . +-.+|.+.+...+.. .....++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLF-IGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEEeCC
Confidence 467777653 1 236788877554433 334568999999998888776543 346789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecchHHHHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSLVKA 458 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (728)
....+++...+++.++.+++..+.....
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~ 149 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHL 149 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhh
Confidence 7778899999999999999988865544
No 61
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=69.64 E-value=19 Score=40.44 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=70.6
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHH---HhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++.. +..+| .+-.+|.+.+...+.. .....++.++|++..+++.+..+- ..+|+++..|+..+.++.
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~v-va~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAA-VAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHcCcEEEecCC
Confidence 4677787643 22222 2456888877554433 334568999999999988886543 446789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecch
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
...++++...+++.++.++++..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77888999999999999988754
No 62
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=69.45 E-value=27 Score=37.92 Aligned_cols=90 Identities=12% Similarity=0.014 Sum_probs=67.0
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHH---HhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. + +-.+|.+.+...+.. .....++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 38 ~p~~~A~~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~ 107 (539)
T 1mdb_A 38 YGDRIAITC---G------NTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFF-EVIFALFRLGALPVFALP 107 (539)
T ss_dssp HTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEe---C------CCcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCeEEecCCC
Confidence 467777653 1 246788877554433 334568999999998888776543 346788999999888877
Q ss_pred CCChhhHHHHHHHcCCeEEecch
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
....+++...+++.++..+++.+
T Consensus 108 ~~~~~~l~~~l~~~~~~~vi~~~ 130 (539)
T 1mdb_A 108 SHRSSEITYFCEFAEAAAYIIPD 130 (539)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEES
T ss_pred CCCHHHHHHHHHhCCCCEEEecc
Confidence 77788999999999999988765
No 63
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=68.96 E-value=22 Score=40.01 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=71.6
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHH---HHHhc-ccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEec
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCA---AEAWG-HIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~---~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~ 429 (728)
.|+.+|++.. +..+| .+..+|.+.+...+ +.... ..++.++|++..+++.+...- ..+|+++..|+..+.++
T Consensus 95 ~pd~~Al~~~-~~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v-~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAI-ITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEE-cCCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEeeC
Confidence 4677787643 22222 23568888775443 33334 678999999999998886544 44678999999999988
Q ss_pred CCCChhhHHHHHHHcCCeEEecchH
Q 004821 430 GSPLERSFGKFVQDSGVSVLGTVPS 454 (728)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~P~ 454 (728)
....++++...|++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7778889999999999999988654
No 64
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=68.54 E-value=18 Score=38.90 Aligned_cols=80 Identities=13% Similarity=0.099 Sum_probs=62.6
Q ss_pred EecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCeEEec
Q 004821 375 PWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGT 451 (728)
Q Consensus 375 ~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~ 451 (728)
.+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+.....+++...+++.++.++.+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~ 106 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEAL-VLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVC 106 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHH-HHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSEEEE
T ss_pred EEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHH-HHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcEEEE
Confidence 578887755443 3334568999999998888776543 446789999999999887778889999999999999998
Q ss_pred chHH
Q 004821 452 VPSL 455 (728)
Q Consensus 452 ~P~~ 455 (728)
.+..
T Consensus 107 ~~~~ 110 (503)
T 4fuq_A 107 DPSK 110 (503)
T ss_dssp CGGG
T ss_pred Cchh
Confidence 7653
No 65
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=65.43 E-value=24 Score=38.68 Aligned_cols=92 Identities=16% Similarity=0.120 Sum_probs=69.3
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. . +-.+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV-VALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEcCC
Confidence 567777763 1 23578887755443 3334568999999998888776544 346789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecchHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSL 455 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~ 455 (728)
....+++...+++.++.++.+....
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7788899999999999999887654
No 66
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=65.21 E-value=23 Score=38.54 Aligned_cols=90 Identities=13% Similarity=0.043 Sum_probs=67.6
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. + +-.+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 43 ~p~~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~Gav~vpl~~ 112 (544)
T 3o83_A 43 HPHSLAIIC---G------ERQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFY-IVFFALLKAGVVVLNALY 112 (544)
T ss_dssp CTTSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEc---C------CCceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH-HHHHHHHHhCcEEecCCC
Confidence 568888763 1 34688887755443 3334568999999998887775544 346788999999888877
Q ss_pred CCChhhHHHHHHHcCCeEEecch
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
.....++...+++.++.++...+
T Consensus 113 ~~~~~~l~~~l~~~~~~~li~~~ 135 (544)
T 3o83_A 113 SHRQYELNAFIKQIQPKLLIGSR 135 (544)
T ss_dssp TCCHHHHHHHHHHHCCSEEEEET
T ss_pred CCCHHHHHHHHHhcCeeEEEEcc
Confidence 77788999999999999998765
No 67
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=64.07 E-value=37 Score=37.25 Aligned_cols=101 Identities=11% Similarity=0.021 Sum_probs=73.1
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++... +. .+-.+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 24 ~p~~~a~~~~~-~~----~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~ 97 (590)
T 3kxw_A 24 SPNKKSCTFLN-KE----LEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLI-QAFLGCLYAGCIAVPIYP 97 (590)
T ss_dssp CTTSEEEEEEE-TT----EEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECC
T ss_pred CCCCeEEEEEc-CC----eeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHH-HHHHHHHHhCcEEEEecC
Confidence 56788876544 11 245788887755443 3334568999999998888776543 446789999999988875
Q ss_pred CC---ChhhHHHHHHHcCCeEEecchHHHHHHH
Q 004821 431 SP---LERSFGKFVQDSGVSVLGTVPSLVKAWK 460 (728)
Q Consensus 431 ~~---~~~~l~~~i~~~~vt~l~~~P~~l~~l~ 460 (728)
.. ..+++...++..++.++...+.....+.
T Consensus 98 ~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~ 130 (590)
T 3kxw_A 98 PAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFT 130 (590)
T ss_dssp CCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHC
T ss_pred CCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHH
Confidence 43 2457888899999999999888777654
No 68
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=63.43 E-value=21 Score=38.74 Aligned_cols=95 Identities=8% Similarity=-0.051 Sum_probs=70.2
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHH---HhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++.. +-.+|.+.+...+.. .....++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALP-VAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHH-HHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHcCceEEecCc
Confidence 4677776521 135788777554433 334568999999998888776543 346789999999998887
Q ss_pred CCChhhHHHHHHHcCCeEEecchHHHHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSLVKA 458 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l~~ 458 (728)
...++++...+++.++..++..+.....
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 133 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQN 133 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhH
Confidence 7778899999999999999987765443
No 69
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=61.51 E-value=31 Score=35.24 Aligned_cols=98 Identities=11% Similarity=0.020 Sum_probs=66.4
Q ss_pred CCCceEEEEecCCCCCCCc--eeecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCH--HHHHHHHHHHHhCcEEEec
Q 004821 189 EDDSVAVVWREDRCDDSSV--NRMTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTV--HAVIIYLAIILAGYVVVSI 263 (728)
Q Consensus 189 ~pd~~Al~~~~~~~~~~~~--~~lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~--~~vva~lA~lkaGa~~vpl 263 (728)
.++.+|.+....+ .+|.. ..+|.+.+...+..+++.+... +.++|++..+++-+. --+...++++..|+.+++.
T Consensus 89 ~~~~~a~i~~TSG-TTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESGG-TTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEECC----CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECCC-CCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4566676655443 33433 3578998888887777777777 899999999988622 2334445558999966654
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCeeEEEeccc
Q 004821 264 ADSFAAR-----------------------EIATRLRVSKAKGIFTQDF 289 (728)
Q Consensus 264 ~p~~p~~-----------------------~l~~~l~~~~~~~il~~~~ 289 (728)
+ +.+. ++...+++.++.+++....
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps 214 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPP 214 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHH
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHH
Confidence 3 3444 6666889999999888764
No 70
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=61.23 E-value=21 Score=39.00 Aligned_cols=85 Identities=7% Similarity=-0.054 Sum_probs=65.3
Q ss_pred EEecCchHHHHHHHH---hcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCeEEe
Q 004821 374 IPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLG 450 (728)
Q Consensus 374 V~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~ 450 (728)
..+|.+.+...+... ....++.++|++...++-+...- ..+|+++..|+..+..+....++++...+++.++.+++
T Consensus 51 ~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~-~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi 129 (548)
T 2d1s_A 51 VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFF-IPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVF 129 (548)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTH-HHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEE
T ss_pred CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHH-HHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEE
Confidence 357888775544433 33468999999998888776544 34678999999999988777888999999999999999
Q ss_pred cchHHHHHH
Q 004821 451 TVPSLVKAW 459 (728)
Q Consensus 451 ~~P~~l~~l 459 (728)
+.+.....+
T Consensus 130 ~~~~~~~~~ 138 (548)
T 2d1s_A 130 SSKKGLDKV 138 (548)
T ss_dssp ECTTTHHHH
T ss_pred EcHHHHHHH
Confidence 887655443
No 71
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=58.27 E-value=29 Score=37.45 Aligned_cols=90 Identities=9% Similarity=-0.114 Sum_probs=66.1
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHH---HhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. . +-.+|.+.+...+.. .....++.++|++...++-+...- ..+|+++..|+..+..+.
T Consensus 17 ~p~~~a~~~--~-------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~-~~~lA~~~~G~v~vpl~~ 86 (521)
T 3l8c_A 17 QADFPVYDC--L-------GERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDML-ATFVALTKSGHAYIPVDV 86 (521)
T ss_dssp STTSEEEEE--T-------TEEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHH-HHHHHHHHTTCCEEEEET
T ss_pred CCCCcceec--C-------CCeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEecCc
Confidence 456676652 1 235788877554443 334568999999988877775443 446788999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecch
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
...++++...++..++..+....
T Consensus 87 ~~~~~~l~~il~~~~~~~ii~~~ 109 (521)
T 3l8c_A 87 HSAPERILAIIEIAKPSLIIAIE 109 (521)
T ss_dssp TSCHHHHHHHHHHSCCSEEEESS
T ss_pred cccHHHHHHHHHhCCCCEEEecC
Confidence 77888999999999999988754
No 72
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=55.42 E-value=29 Score=37.22 Aligned_cols=90 Identities=8% Similarity=-0.037 Sum_probs=66.4
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecCCCC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPL 433 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~~~~ 433 (728)
.|+.+|++- + +-.+|++.+...+......+.-.++|++...++-+..+- ..+|+++..|+..+..+....
T Consensus 14 ~pd~~Al~~---~------~~~~Ty~eL~~~~~~lA~~L~~~~gd~V~i~~~n~~e~~-~~~lA~~~~Gav~vpl~~~~~ 83 (501)
T 3ipl_A 14 NGHHIAITD---G------QESYTYQNLYCEASLLAKRLKAYQQSRVGLYIDNSIQSI-ILIHACWLANIEIAMINTRLT 83 (501)
T ss_dssp HTTSEEEEC---S------SCEEEHHHHHHHHHHHHHHHHTTCCSEEEEECCSSHHHH-HHHHHHHHTTCEEEECCTTSC
T ss_pred cCCceEEEe---C------CcEEEHHHHHHHHHHHHHHHHHcCCCEEEEEcCCCHHHH-HHHHHHHHcCCEEEecCccCC
Confidence 457777652 1 136888887666655544443338999998888776543 446789999999999887778
Q ss_pred hhhHHHHHHHcCCeEEecch
Q 004821 434 ERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 434 ~~~l~~~i~~~~vt~l~~~P 453 (728)
++++...+++.++.++++..
T Consensus 84 ~~~l~~~l~~~~~~~li~~~ 103 (501)
T 3ipl_A 84 PNEMTNQMRSIDVQLIFCTL 103 (501)
T ss_dssp HHHHHHHHHHTTCCEEEESS
T ss_pred HHHHHHHHHhcCCCEEEEcc
Confidence 88999999999999988754
No 73
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=55.29 E-value=33 Score=40.51 Aligned_cols=95 Identities=14% Similarity=0.027 Sum_probs=71.2
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. +.+| -.+|.+.+...+. ......++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 74 ~pd~~Al~~---~~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~-v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLIN---GPTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFV-LSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEE---TTTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHH-HHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEE---CCCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHH-HHHHHHHHcCCEEEeeCC
Confidence 578888764 2222 4578877654443 3334578999999998888775443 446789999999999987
Q ss_pred CCChhhHHHHHHHcCCeEEecchHHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSLV 456 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~l 456 (728)
...++++...+++.++.++++.+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 77888999999999999999876543
No 74
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=54.52 E-value=35 Score=36.68 Aligned_cols=89 Identities=11% Similarity=-0.070 Sum_probs=65.2
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHH---HhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAE---AWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~---~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++. . +-.+|.+.+...+.. .....++.++|++...++-+..+- ..+|+++..|+..+..+.
T Consensus 14 ~p~~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~-~~~la~~~~G~v~vpl~~ 83 (512)
T 3fce_A 14 TPDQTAFVW-R--------DAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMI-INFLGCVKAGHAYIPVDL 83 (512)
T ss_dssp STTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHH-HHHHHHHHTTCCEEEEET
T ss_pred CCCceEEEe-C--------CceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCC
Confidence 467777653 1 135788877554433 334468899999988877665433 446789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecc
Q 004821 431 SPLERSFGKFVQDSGVSVLGTV 452 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (728)
....+++...++..++.++...
T Consensus 84 ~~~~~~l~~il~~~~~~~~i~~ 105 (512)
T 3fce_A 84 SIPADRVQRIAENSGAKLLLSA 105 (512)
T ss_dssp TSCHHHHHHHHHHSCCCEEEES
T ss_pred CCcHHHHHHHHHhcCCCEEEec
Confidence 7788899999999999988764
No 75
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=54.49 E-value=51 Score=35.89 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=66.8
Q ss_pred CCCCeEEEEeccCCCCCCc--eEEecCchHHHHHHHH---hcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEe
Q 004821 354 PVDSVINILFSSGTTGEPK--AIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALY 428 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PK--gV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~ 428 (728)
.|+.+|++.. .|..+..+ .-.+|.+.+...+... ....++ ++|++...++-+..+-. .+|+++..|+..+..
T Consensus 33 ~p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~-~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFA-IIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHH-HHHHHHHTTCEEEEC
T ss_pred CCCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHH-HHHHHHHhCCEEEec
Confidence 5677887644 33333333 3567888775444333 334567 79999988887765443 467899999999988
Q ss_pred cCCCChhhHHHHHHHcCCeEEecch
Q 004821 429 HGSPLERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
+.....+++...+++.++.++++..
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 8777788999999999999877653
No 76
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=48.81 E-value=55 Score=36.28 Aligned_cols=89 Identities=7% Similarity=-0.159 Sum_probs=65.9
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|++- . .-.+|.+.+...+. ......++.++|++..+++-+..+- ..+|+.+..|+..+..+.
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-va~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESI-TCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH-HHHHHHHHhCCEEEeeCc
Confidence 567777653 1 12578887754443 3334568999999998888776543 346789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecc
Q 004821 431 SPLERSFGKFVQDSGVSVLGTV 452 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (728)
....+++..++++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 7777889999999999988744
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=44.56 E-value=1.5e+02 Score=27.62 Aligned_cols=90 Identities=9% Similarity=-0.059 Sum_probs=53.3
Q ss_pred CEEEeecccc--hhhhhHHHHHHH-HhCCEEEEecCCCChhhHHHHHHHcCCeEEec------chHH--HHHHHccCcCC
Q 004821 398 DVYCWPTNLG--WVMGPIILFSSF-LSGAALALYHGSPLERSFGKFVQDSGVSVLGT------VPSL--VKAWKNTNCLQ 466 (728)
Q Consensus 398 d~~l~~~~~~--~~~~~~~i~~~l-~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~------~P~~--l~~l~~~~~~~ 466 (728)
-+++..++-+ |+.|...+-..| .+|..++.......++.+.+.++++++..+.+ ++++ ++.+.+.....
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~ 172 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEE 172 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHT
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHc
Confidence 4555555443 899886543444 46666666555667889999999999997777 2222 22222221111
Q ss_pred CCCccceeeEEeeCCCCCcchHH
Q 004821 467 GLDWTKIRSFASTGETSNVDDDL 489 (728)
Q Consensus 467 ~~~l~~Lr~v~~~Ge~l~~~~~~ 489 (728)
.. -..++ +++||.+++++..+
T Consensus 173 ~~-~~~v~-v~vGG~~~~~~~a~ 193 (215)
T 3ezx_A 173 KL-RDSVK-CMFGGAPVSDKWIE 193 (215)
T ss_dssp TC-GGGSE-EEEESSSCCHHHHH
T ss_pred CC-CCCCE-EEEECCCCCHHHHH
Confidence 11 01333 68899999876443
No 78
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=42.59 E-value=65 Score=35.57 Aligned_cols=89 Identities=16% Similarity=0.032 Sum_probs=66.6
Q ss_pred CCCeEEEEeccCCCCCCceEEecCchHHHHHH---HHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecCC
Q 004821 355 VDSVINILFSSGTTGEPKAIPWTQLSPIRCAA---EAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGS 431 (728)
Q Consensus 355 ~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~---~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~~ 431 (728)
|+.+|.+- | +-.+|.+.+...+. ......++.++|++...++-+..+- ..+|+.+..|+..+..+..
T Consensus 39 pd~~Av~~---~------~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~v-va~lA~l~aG~~~vpl~~~ 108 (617)
T 3rg2_A 39 SDSIAVID---G------ERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELY-ITFFALLKLGVAPVLALFS 108 (617)
T ss_dssp CCSEEEEE---T------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH-HHHHHHHHHTCEEEEECTT
T ss_pred CCCeEEec---C------CceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHH-HHHHHHHhcCeEEccCCcc
Confidence 67777662 1 23588887754443 3334568999999998888776544 3467999999999888877
Q ss_pred CChhhHHHHHHHcCCeEEecch
Q 004821 432 PLERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~P 453 (728)
...+++...+++.++.++....
T Consensus 109 ~~~~~l~~~l~~~~~~~vl~~~ 130 (617)
T 3rg2_A 109 HQRSELNAYASQIEPALLIADR 130 (617)
T ss_dssp CCHHHHHHHHHHHCCSEEEEET
T ss_pred ccHHHHHHHHhhcCceEEEecc
Confidence 7778899999999999988765
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=42.37 E-value=69 Score=34.78 Aligned_cols=86 Identities=8% Similarity=-0.060 Sum_probs=63.4
Q ss_pred eEEecCchHHHHHHHH---hcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecCCCC-------hhhHHHHHH
Q 004821 373 AIPWTQLSPIRCAAEA---WGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPL-------ERSFGKFVQ 442 (728)
Q Consensus 373 gV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~~~~-------~~~l~~~i~ 442 (728)
+-.+|.+.+...+... ....++.++|++...++-+..+- ..+|+++..|+..+..+.... .+++...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~-~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFV-EAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHH-HHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHH-HHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 3578888775544433 34568999999999888776543 346789999999988865443 567888999
Q ss_pred HcCCeEEecchHHHHHH
Q 004821 443 DSGVSVLGTVPSLVKAW 459 (728)
Q Consensus 443 ~~~vt~l~~~P~~l~~l 459 (728)
..++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999887655443
No 80
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=41.69 E-value=69 Score=34.29 Aligned_cols=89 Identities=12% Similarity=-0.036 Sum_probs=64.1
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHHHHHh----cccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEec
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCAAEAW----GHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYH 429 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~ 429 (728)
.|+.+|++- .+-.+|.+.+...+.... ...+..+++++...++-+..+ +..+|+++..|+..+..+
T Consensus 14 ~p~~~Al~~---------~~~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~ 83 (511)
T 3e7w_A 14 YPQTDAFRS---------QGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHM-IVSFLGSVKAGHPYIPVD 83 (511)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHH-HHHHHHHHHHTCCEEEEE
T ss_pred CCCCeEEEc---------CCceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHH-HHHHHHHHHhCCEEEecC
Confidence 467777652 124688888765444333 234667889888777665443 344678999999999988
Q ss_pred CCCChhhHHHHHHHcCCeEEecc
Q 004821 430 GSPLERSFGKFVQDSGVSVLGTV 452 (728)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~ 452 (728)
.....+++...+++.++.++...
T Consensus 84 ~~~~~~~l~~~l~~~~~~~li~~ 106 (511)
T 3e7w_A 84 LSIPSERIAKIIESSGAELLIHA 106 (511)
T ss_dssp TTSCHHHHHHHHHHHTCCEEEES
T ss_pred CCChHHHHHHHHHhCCCCEEEec
Confidence 77788899999999999998863
No 81
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=41.52 E-value=65 Score=32.34 Aligned_cols=70 Identities=21% Similarity=0.237 Sum_probs=45.3
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHH-HhCcEEEecCCC----------C---CHHHHHHHHHhcCeeEEEeccc
Q 004821 230 FSKGDAIAIDMPMTV------HAVIIYLAII-LAGYVVVSIADS----------F---AAREIATRLRVSKAKGIFTQDF 289 (728)
Q Consensus 230 v~~gd~V~i~~~~s~------~~vva~lA~l-kaGa~~vpl~p~----------~---p~~~l~~~l~~~~~~~il~~~~ 289 (728)
+++||+|+|++|.+. +.+-.-...+ ..|.-++. .+. . ..+.+..++.|-.+++|++..+
T Consensus 9 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 9 LKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTF-GEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEE-CTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEE-CcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 789999999999863 3333333333 34655543 232 1 2345777888899999999987
Q ss_pred eeecCccccch
Q 004821 290 ILRGGRKFPLY 300 (728)
Q Consensus 290 ~~~~~~~~~~~ 300 (728)
-+...+.++.+
T Consensus 88 G~g~~rlL~~L 98 (327)
T 4h1h_A 88 GFNSNQLLPYL 98 (327)
T ss_dssp CSCGGGGGGGC
T ss_pred chhHHHHhhhc
Confidence 66555555543
No 82
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=39.89 E-value=71 Score=34.19 Aligned_cols=78 Identities=15% Similarity=0.147 Sum_probs=59.5
Q ss_pred EEecCchHHHHHHHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecCCCChhhHHHHHHHcCCeEEecch
Q 004821 374 IPWTQLSPIRCAAEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHGSPLERSFGKFVQDSGVSVLGTVP 453 (728)
Q Consensus 374 V~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
-.+|.+.+...+......+ ..++++...++-+..+- ..+|+++..|+..+..+.....+++...+++.++.++...+
T Consensus 47 ~~~Ty~eL~~~~~~~A~~L--~~~~~V~i~~~~~~~~~-~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~ 123 (505)
T 3nyq_A 47 RSLTYAELAAAAGATAGRI--GGAGRVAVWATPAMETG-VAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPP 123 (505)
T ss_dssp EEEEHHHHHHHHHHHHTTC--C---CEEEECCSSHHHH-HHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECT
T ss_pred eeeeHHHHHHHHHHHHhhc--cCCCEEEEEcCCCHHHH-HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECC
Confidence 4689988887777666544 46888888777766543 44678999999999998777888999999999999998865
Q ss_pred H
Q 004821 454 S 454 (728)
Q Consensus 454 ~ 454 (728)
.
T Consensus 124 ~ 124 (505)
T 3nyq_A 124 D 124 (505)
T ss_dssp T
T ss_pred c
Confidence 4
No 83
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=39.71 E-value=1e+02 Score=27.51 Aligned_cols=71 Identities=10% Similarity=0.194 Sum_probs=45.6
Q ss_pred hhhHHHHHccCCCceeeeeEEee-cCCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCCCcccceEEEcC
Q 004821 624 SVEIERVCDGADESILETAAISV-SPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNPLFKVSLVKIVL 699 (728)
Q Consensus 624 ~~eIE~~l~~~~p~V~~a~vv~~-~~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~ 699 (728)
-+|+++.|. +.++|..|-|... +........--+++.++++.. ++... . .|++.+....|. +.|..+.+++
T Consensus 92 egELartI~-~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~g~~-l~~~q-~-~I~~LVa~SV~g-L~~enVtVvd 163 (171)
T 1yj7_A 92 EQDIERLLS-KIPGVIDCSVSLNVNNNESQPSSAAVLVISSPEVN-LAPSV-I-QIKNLVKNSVDD-LKLENISVVI 163 (171)
T ss_dssp HHHHHHHHT-TSTTEEEEEEEEEC-------CEEEEEEEECTTCC-CGGGH-H-HHHHHHHHHSTT-CCGGGEEEEE
T ss_pred HHHHHHHHH-cCCCeeEEEEEEECCCCCCCCceEEEEEEeCCCCC-CcHhH-H-HHHHHHHHhcCC-CCcccEEEEe
Confidence 679999995 9999999988554 332221122334444566665 66554 3 488888888874 7788888876
No 84
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=34.44 E-value=1.2e+02 Score=30.33 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=46.6
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCcEEEecCCC----------CC---HHHHHHHHHhcCeeEEEeccc
Q 004821 230 FSKGDAIAIDMPMTV------HAVIIYLAIIL-AGYVVVSIADS----------FA---AREIATRLRVSKAKGIFTQDF 289 (728)
Q Consensus 230 v~~gd~V~i~~~~s~------~~vva~lA~lk-aGa~~vpl~p~----------~p---~~~l~~~l~~~~~~~il~~~~ 289 (728)
+++||+|+|++|.+. +.+-.-...++ .|.-++. .++ .+ .+.+..++.|-.+++|++..+
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTF-STHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEE-CTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEE-CCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 789999999999875 23333444454 5666553 332 22 334666778889999999987
Q ss_pred eeecCccccch
Q 004821 290 ILRGGRKFPLY 300 (728)
Q Consensus 290 ~~~~~~~~~~~ 300 (728)
-+...+.++.+
T Consensus 88 G~g~~rlL~~l 98 (331)
T 4e5s_A 88 GYNSNGLLKYL 98 (331)
T ss_dssp CSCGGGGGGGC
T ss_pred cccHHHHHhhc
Confidence 66555565554
No 85
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=33.41 E-value=97 Score=31.71 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=46.4
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCcEEEecCC---------CCC---HHHHHHHHHhcCeeEEEeccce
Q 004821 230 FSKGDAIAIDMPMTV------HAVIIYLAIIL-AGYVVVSIAD---------SFA---AREIATRLRVSKAKGIFTQDFI 290 (728)
Q Consensus 230 v~~gd~V~i~~~~s~------~~vva~lA~lk-aGa~~vpl~p---------~~p---~~~l~~~l~~~~~~~il~~~~~ 290 (728)
+++||+|+|++|.+. +.+-.-...++ .|.-++.-.- ..+ .+.|..++.|-.+++|++..+-
T Consensus 40 Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rGG 119 (371)
T 3tla_A 40 LAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIGG 119 (371)
T ss_dssp CCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCCC
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 899999999999984 23333344444 5666553311 112 3346667778899999999877
Q ss_pred eecCccccch
Q 004821 291 LRGGRKFPLY 300 (728)
Q Consensus 291 ~~~~~~~~~~ 300 (728)
+...+.++.+
T Consensus 120 yga~rlLp~L 129 (371)
T 3tla_A 120 DNSNSLLPFL 129 (371)
T ss_dssp SCGGGGGGGS
T ss_pred ccHHHHHhhc
Confidence 6655666654
No 86
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=31.92 E-value=1.4e+02 Score=30.09 Aligned_cols=70 Identities=17% Similarity=0.231 Sum_probs=46.5
Q ss_pred cCCCCEEEEEcCCCH------HHHHHHHHHHH-hCcEEEecCCC----------CC---HHHHHHHHHhcCeeEEEeccc
Q 004821 230 FSKGDAIAIDMPMTV------HAVIIYLAIIL-AGYVVVSIADS----------FA---AREIATRLRVSKAKGIFTQDF 289 (728)
Q Consensus 230 v~~gd~V~i~~~~s~------~~vva~lA~lk-aGa~~vpl~p~----------~p---~~~l~~~l~~~~~~~il~~~~ 289 (728)
+++||+|+|++|.+. +.+-.-...++ .|.-++. .+. .+ .+.+..++.|-.+++|++..+
T Consensus 10 L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~-~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 10 LKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILE-GSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEE-CTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEE-cccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 789999999999984 23333344444 5666553 322 12 334667778889999999987
Q ss_pred eeecCccccch
Q 004821 290 ILRGGRKFPLY 300 (728)
Q Consensus 290 ~~~~~~~~~~~ 300 (728)
-+...+.++.+
T Consensus 89 G~g~~rlL~~l 99 (336)
T 3sr3_A 89 GMNSNSLLPYI 99 (336)
T ss_dssp CSCGGGGGGGS
T ss_pred cccHHHHhhhc
Confidence 76555665554
No 87
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=30.76 E-value=1.6e+02 Score=29.69 Aligned_cols=78 Identities=15% Similarity=0.211 Sum_probs=55.6
Q ss_pred ecHHHHHHHHHHHHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEecc
Q 004821 210 MTYKELRERVMLVANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (728)
Q Consensus 210 lTY~eL~~~a~~lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~ 288 (728)
=||+.- -..+.+.....+- +++|.+..+....+=.-+..-++|.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 63 GSfK~R-gA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 63 ASIADR-PAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp SBTTHH-HHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred CCcHHH-HHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 355432 2234555555555 88888777777778888888899999998766666655555566778999999999865
No 88
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=27.54 E-value=1.6e+02 Score=23.67 Aligned_cols=64 Identities=8% Similarity=0.111 Sum_probs=39.8
Q ss_pred chhhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHHHHhcCC
Q 004821 623 SSVEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAIQRNLNP 688 (728)
Q Consensus 623 ~~~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l~~~Lp~ 688 (728)
...+|++.+. +.|+|.++-=+-.... +..-.+-+-|+..+...-.+..++...+++.|++.+|.
T Consensus 11 ~~~~I~~~l~-~~~gV~~vh~lr~r~~-G~~~~v~~hI~v~~~~sv~eah~i~~~ie~~L~~~~~~ 74 (107)
T 2zzt_A 11 MYDDIFAVLE-RFPNVHNPHRVRIRRV-GTKYFIEMDIEVDGKMSVKDAHELTVKIRKEMLKRRDD 74 (107)
T ss_dssp HHHHHHHHHT-TCSSCEEEEEEEEECS-CC-CEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH-cCCCccccEEEEEEEE-CCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3567888885 8999988755544432 23245566677654421012246788888888888873
No 89
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=25.26 E-value=2.3e+02 Score=28.32 Aligned_cols=67 Identities=19% Similarity=0.147 Sum_probs=46.3
Q ss_pred HHHHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEecc
Q 004821 222 VANALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQD 288 (728)
Q Consensus 222 lA~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~ 288 (728)
+.....+- +++|+.|.+....+=.-....+++.+.|.-++.+-|...+..-..+++..++++++++.
T Consensus 59 i~~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 126 (334)
T 3tbh_A 59 YDKAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPA 126 (334)
T ss_dssp HHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECC
Confidence 33334333 68888875556667677777788888898666555554444455678899999999975
No 90
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=25.06 E-value=3.4e+02 Score=28.14 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=34.7
Q ss_pred cCCCCEEEEEcCCCHHHHHHHH-HHHHhCcEEEecCCCCCHHHHHHHHHhcCeeEEEeccc
Q 004821 230 FSKGDAIAIDMPMTVHAVIIYL-AIILAGYVVVSIADSFAAREIATRLRVSKAKGIFTQDF 289 (728)
Q Consensus 230 v~~gd~V~i~~~~s~~~vva~l-A~lkaGa~~vpl~p~~p~~~l~~~l~~~~~~~il~~~~ 289 (728)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.+ ..+.++..++. +.++|+.+..
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p 176 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETI 176 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESS
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECC
Confidence 6788887665554444333332 455677777777665 56666666654 5667766543
No 91
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics, protein structure INI nysgrc, PSI-biology; 2.90A {Sinorhizobium meliloti}
Probab=23.73 E-value=2.3e+02 Score=30.47 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=31.3
Q ss_pred EEEeecccchhhhh--HHHHHHHHhCCEEEEecCCCCh---hhHHHHHHHc
Q 004821 399 VYCWPTNLGWVMGP--IILFSSFLSGAALALYHGSPLE---RSFGKFVQDS 444 (728)
Q Consensus 399 ~~l~~~~~~~~~~~--~~i~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~ 444 (728)
+++..+|+.|-..+ +-+..+|.+|.++|+-+....| ..+.+++.+.
T Consensus 165 VV~~I~PwN~P~~~~~~~~a~ALaaGN~VVlKpse~tp~t~~~l~~l~~ea 215 (521)
T 4e4g_A 165 IGAGITPFNFPGMIPMWMFAPAIACGNAFILKPSERDPSVPIRLAELMIEA 215 (521)
T ss_dssp EEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCTTSTHHHHHHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCEEEEECCCcchHHHHHHHHHHHHh
Confidence 55666777765554 5677899999999997654443 3456666664
No 92
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=23.30 E-value=1.6e+02 Score=35.97 Aligned_cols=92 Identities=17% Similarity=0.063 Sum_probs=68.1
Q ss_pred CCCCeEEEEeccCCCCCCceEEecCchHHHHH---HHHhcccCCCCCCEEEeecccchhhhhHHHHHHHHhCCEEEEecC
Q 004821 354 PVDSVINILFSSGTTGEPKAIPWTQLSPIRCA---AEAWGHIDMKVGDVYCWPTNLGWVMGPIILFSSFLSGAALALYHG 430 (728)
Q Consensus 354 ~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~i~~~l~~G~~lv~~~~ 430 (728)
.|+.+|.+ +. +-.+|.+.+...+ +......++.+++++..+++-+..+- ..+++.+.+|+..+..+.
T Consensus 477 ~p~~~Av~-~~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~v-v~~lailkaG~~~vpldp 546 (1304)
T 2vsq_A 477 NPDAPALT-YS--------GQTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELV-IGILGVLKAGAAYLPVDP 546 (1304)
T ss_dssp CTTSEEEE-SS--------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHH-HHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEE-EC--------CeeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHH-HHHHHHHHHCCEEEEECC
Confidence 56777764 21 1357887764443 33334568999999998888776544 346789999999999887
Q ss_pred CCChhhHHHHHHHcCCeEEecchHH
Q 004821 431 SPLERSFGKFVQDSGVSVLGTVPSL 455 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P~~ 455 (728)
....+++..++++.++.++.+.+..
T Consensus 547 ~~p~~rl~~il~~~~~~~vl~~~~~ 571 (1304)
T 2vsq_A 547 KLPEDRISYMLADSAAACLLTHQEM 571 (1304)
T ss_dssp TSCHHHHHHHHHHHTCCEEEECSTT
T ss_pred CCHHHHHHHHHHHcCCCEEEECcch
Confidence 7777899999999999998887654
No 93
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=21.58 E-value=1.3e+02 Score=22.45 Aligned_cols=45 Identities=20% Similarity=0.147 Sum_probs=28.8
Q ss_pred hhHHHHHccCCCceeeeeEEeecCCCCCceEEEEEEEEcCCCCCCChHHHHHHHHHHH
Q 004821 625 VEIERVCDGADESILETAAISVSPAGGGPEVLVICVVLKKGFTSQPVDKLKMIFSKAI 682 (728)
Q Consensus 625 ~eIE~~l~~~~p~V~~a~vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~l~~~l~~~l 682 (728)
.++++.| +++|+|.+|..+.-+ .-+++.+..+ +.+++.+.+.+.|
T Consensus 16 ~~~~~~l-~~~peV~~~~~vtG~------~d~l~~v~~~------d~~~l~~~~~~~l 60 (83)
T 2zbc_A 16 DEVFERL-KSMSEVTEVHVVYGV------YDIVVKVEAD------SMDKLKDFVTNTI 60 (83)
T ss_dssp HHHHHHH-TTCTTEEEEEECSSS------CSEEEEEECS------SHHHHHHHHHHTG
T ss_pred HHHHHHH-hCCCCeEEEEEEecc------CCEEEEEEEC------CHHHHHHHHHHHh
Confidence 6889999 499999999876421 3355555543 4466666544333
No 94
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase; oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus subtilis}
Probab=21.44 E-value=2.7e+02 Score=29.54 Aligned_cols=47 Identities=9% Similarity=0.042 Sum_probs=32.6
Q ss_pred CEEEeecccchhhhh--HHHHHHHHhCCEEEEecCCCCh---hhHHHHHHHc
Q 004821 398 DVYCWPTNLGWVMGP--IILFSSFLSGAALALYHGSPLE---RSFGKFVQDS 444 (728)
Q Consensus 398 d~~l~~~~~~~~~~~--~~i~~~l~~G~~lv~~~~~~~~---~~l~~~i~~~ 444 (728)
-+++..+|+.|-..+ +.+..+|.+|.++++-+....| ..+.+++.+.
T Consensus 143 GVV~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a 194 (486)
T 1t90_A 143 GVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKA 194 (486)
T ss_dssp SEEEEECCSSCTTHHHHHHHHHHHHTTCEEEEECCSSSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCchhHHHHHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHHh
Confidence 367777887765443 5677899999999997654443 3566666664
No 95
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Probab=21.17 E-value=2.7e+02 Score=29.51 Aligned_cols=46 Identities=9% Similarity=-0.065 Sum_probs=30.5
Q ss_pred EEEeecccchhhhh--HHHHHHHHhCCEEEEecCCCChh---hHHHHHHHc
Q 004821 399 VYCWPTNLGWVMGP--IILFSSFLSGAALALYHGSPLER---SFGKFVQDS 444 (728)
Q Consensus 399 ~~l~~~~~~~~~~~--~~i~~~l~~G~~lv~~~~~~~~~---~l~~~i~~~ 444 (728)
+++..+|+.|-..+ +-+..+|.+|.++++-+....|. .+.+++.+.
T Consensus 142 Vv~~I~PwN~P~~~~~~~~~~ALaaGN~VVlKps~~tp~t~~~l~~l~~~a 192 (490)
T 3ju8_A 142 VVAVFGPYNFPGHLPNGHIVPALLAGNCVVFKPSELTPKVAELTLKAWIQA 192 (490)
T ss_dssp EEEEECCSSSTTHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred EEEEECCCcchHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 56667777766554 56778999999999976544432 344555543
No 96
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=20.72 E-value=2.6e+02 Score=28.24 Aligned_cols=62 Identities=15% Similarity=0.021 Sum_probs=41.1
Q ss_pred HHHHhh-cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec--CC---CCCHHHHHHHHHhcC--eeEEEecc
Q 004821 224 NALDTM-FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI--AD---SFAAREIATRLRVSK--AKGIFTQD 288 (728)
Q Consensus 224 ~~L~~~-v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl--~p---~~p~~~l~~~l~~~~--~~~il~~~ 288 (728)
..|... +++||.|.+-.+....+. -++...|+.++.+ ++ ....+.++..+...+ .++|+...
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~ 137 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA 137 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC
T ss_pred HHHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC
Confidence 335556 899999988776655543 3456789876555 43 247888888875445 77777543
No 97
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=20.70 E-value=4.3e+02 Score=26.13 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=39.7
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec--CCC--CCHHHHHHHHHhcCeeEEEeccceeecCcccc
Q 004821 230 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI--ADS--FAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298 (728)
Q Consensus 230 v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl--~p~--~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~ 298 (728)
.++||.|.+..+..+.+.-++..+.+.|+.++.+ +++ ...+.++..++. ++++|+........+...+
T Consensus 85 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~ 156 (382)
T 4eb5_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQP 156 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCC
T ss_pred cCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcC-CCeEEEEeccCCCccccCC
Confidence 3689988887766655544443333467765544 433 467778777754 5777776654333344333
No 98
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=20.66 E-value=4.6e+02 Score=25.72 Aligned_cols=68 Identities=18% Similarity=0.078 Sum_probs=43.6
Q ss_pred cCCCCEEEEEcCCCHHHHHHHHHHHHhCcEEEec--CCC--CCHHHHHHHHHhcCeeEEEeccceeecCcccc
Q 004821 230 FSKGDAIAIDMPMTVHAVIIYLAIILAGYVVVSI--ADS--FAAREIATRLRVSKAKGIFTQDFILRGGRKFP 298 (728)
Q Consensus 230 v~~gd~V~i~~~~s~~~vva~lA~lkaGa~~vpl--~p~--~p~~~l~~~l~~~~~~~il~~~~~~~~~~~~~ 298 (728)
.++||.|.+..+..+.+..++..+.+.|+.++.+ +++ ...+.++..++. ++++++.....-..+...+
T Consensus 85 ~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~ 156 (382)
T 4hvk_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQP 156 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCC
T ss_pred cCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCC
Confidence 3789999988777777766655555678765555 433 367888877754 5677776654333343333
No 99
>1hf2_A MINC, septum site-determining protein MINC; cell division protein, FTSZ, bacterial cell division, beta helix; 2.2A {Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Probab=20.47 E-value=64 Score=30.03 Aligned_cols=55 Identities=18% Similarity=0.289 Sum_probs=38.3
Q ss_pred cccccccCCCccceecCCeEEE---------ecCCcEEEEeecCCcccc--Cc---eeechhhHHHHHc
Q 004821 578 YFSGMPIYKGMHLRRHGDIIKR---------TVGGYIIVQGRADDTMNL--GG---IKTSSVEIERVCD 632 (728)
Q Consensus 578 ~f~~~p~~~g~~~yrTGDl~~~---------~~dG~l~~~GR~dd~ik~--~G---~ri~~~eIE~~l~ 632 (728)
.+...|.+.|++.|..||+.-+ -.+|++++.|+....+-- .| -+|....++..+.
T Consensus 102 ~ii~~~vRSGQ~I~~~gdlvVlGdVn~GAeViA~GnI~V~G~LrG~a~AGa~Gn~~A~I~a~~l~pe~l 170 (210)
T 1hf2_A 102 KVIKRNIRSGQTVVHSGDVIVFGNVNKGAEILAGGSVVVFGKAQGNIRAGLNEGGQAVVAALDLQTSLI 170 (210)
T ss_dssp SEECSCBCTTEEEEESSCEEESSCBCTTCEEEESSCEEEEEEECSEEEECTTTCTTCEEEEEEECCSEE
T ss_pred EEEeCcccCCCEEEecCCEEEEccCCCCCEEEeCCcEEEEEeeceEEEeCCCCCCCcEEEeccCcceEE
Confidence 5666777889889999999754 468999999998776652 23 3455554444443
Done!