Query 004822
Match_columns 728
No_of_seqs 643 out of 4762
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 06:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004822.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004822hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.7E-42 2.6E-46 404.7 27.8 339 30-388 7-384 (768)
2 1ogq_A PGIP-2, polygalacturona 100.0 3E-41 1E-45 356.5 19.2 295 31-332 2-302 (313)
3 4eco_A Uncharacterized protein 100.0 3.5E-40 1.2E-44 381.9 26.6 337 31-385 26-501 (636)
4 4ecn_A Leucine-rich repeat pro 100.0 1.3E-39 4.4E-44 384.1 30.7 335 30-385 264-741 (876)
5 3rgz_A Protein brassinosteroid 100.0 2.5E-38 8.4E-43 374.7 21.1 302 81-388 317-720 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 2E-37 6.7E-42 345.0 26.5 323 61-389 6-412 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 3E-36 1E-40 337.6 23.5 322 61-389 5-337 (477)
8 4eco_A Uncharacterized protein 100.0 9E-35 3.1E-39 336.5 24.5 287 94-386 195-527 (636)
9 3t6q_A CD180 antigen; protein- 100.0 1.8E-33 6E-38 324.8 31.0 319 61-386 6-390 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 9.7E-34 3.3E-38 326.9 28.7 136 245-385 393-534 (606)
11 3t6q_A CD180 antigen; protein- 100.0 1.5E-33 5.2E-38 325.3 25.8 300 83-389 255-564 (606)
12 4ecn_A Leucine-rich repeat pro 100.0 2E-33 6.7E-38 331.4 26.9 283 98-386 440-767 (876)
13 2z7x_B TOLL-like receptor 1, v 100.0 1.4E-33 4.9E-38 319.3 24.2 158 223-389 321-485 (520)
14 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.8E-33 1.3E-37 318.9 27.8 296 82-389 52-514 (562)
15 3o6n_A APL1; leucine-rich repe 100.0 6E-34 2E-38 310.4 19.9 323 54-388 3-355 (390)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-33 9.2E-38 319.3 25.0 311 66-385 5-423 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 7E-33 2.4E-37 321.0 28.7 316 69-389 35-584 (635)
18 3oja_B Anopheles plasmodium-re 100.0 2E-33 6.7E-38 323.3 21.5 324 53-388 8-361 (597)
19 3j0a_A TOLL-like receptor 5; m 100.0 1.8E-31 6.3E-36 319.0 37.9 160 81-240 23-188 (844)
20 1ziw_A TOLL-like receptor 3; i 100.0 5.8E-32 2E-36 316.4 29.3 318 62-385 1-366 (680)
21 2id5_A Lingo-1, leucine rich r 100.0 6E-32 2E-36 302.7 28.0 294 84-386 13-310 (477)
22 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-33 4.2E-38 298.2 12.8 248 106-361 50-302 (313)
23 3v47_A TOLL-like receptor 5B a 100.0 8.3E-33 2.8E-37 307.6 20.0 282 80-367 52-412 (455)
24 2z63_A TOLL-like receptor 4, v 100.0 6.5E-32 2.2E-36 309.2 26.0 157 224-386 345-508 (570)
25 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-31 5.4E-36 312.7 29.0 300 84-388 250-625 (680)
26 3j0a_A TOLL-like receptor 5; m 100.0 6.7E-32 2.3E-36 322.9 26.3 298 79-385 45-394 (844)
27 2z63_A TOLL-like receptor 4, v 100.0 1.5E-31 5.2E-36 306.1 26.1 299 81-387 51-485 (570)
28 1xku_A Decorin; proteoglycan, 100.0 7.7E-31 2.6E-35 279.1 29.2 265 62-334 28-306 (330)
29 2z81_A CD282 antigen, TOLL-lik 100.0 1.7E-31 5.9E-36 304.4 24.5 152 223-389 358-514 (549)
30 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-31 9.4E-36 300.6 23.6 292 82-385 21-434 (520)
31 2ft3_A Biglycan; proteoglycan, 100.0 9.2E-31 3.2E-35 278.7 25.6 287 84-382 35-330 (332)
32 4fcg_A Uncharacterized protein 100.0 7.7E-32 2.6E-36 286.2 15.6 275 32-365 24-316 (328)
33 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-30 5.4E-35 297.2 26.7 289 83-385 32-463 (562)
34 3vq2_A TLR4, TOLL-like recepto 100.0 2.2E-30 7.4E-35 298.9 27.7 319 61-387 5-488 (606)
35 4fmz_A Internalin; leucine ric 100.0 5.2E-30 1.8E-34 274.5 25.7 282 81-385 65-346 (347)
36 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.4E-34 269.6 27.1 290 83-383 32-330 (330)
37 2ft3_A Biglycan; proteoglycan, 100.0 6.8E-30 2.3E-34 272.0 24.2 287 61-361 29-331 (332)
38 3o6n_A APL1; leucine-rich repe 100.0 1.4E-29 4.7E-34 275.9 22.7 269 81-365 68-354 (390)
39 2z80_A TOLL-like receptor 2, v 100.0 4.4E-30 1.5E-34 275.9 17.6 246 90-340 39-295 (353)
40 1o6v_A Internalin A; bacterial 100.0 6.7E-29 2.3E-33 277.0 26.6 280 81-387 67-346 (466)
41 1o6v_A Internalin A; bacterial 100.0 9.3E-29 3.2E-33 275.8 26.2 282 80-388 88-369 (466)
42 2z66_A Variable lymphocyte rec 100.0 6.9E-30 2.3E-34 268.6 15.7 249 61-311 3-262 (306)
43 3bz5_A Internalin-J, INLJ; leu 100.0 4E-28 1.4E-32 269.2 30.4 209 82-314 42-250 (457)
44 3oja_B Anopheles plasmodium-re 100.0 1E-28 3.4E-33 284.1 25.3 266 81-365 74-360 (597)
45 4fmz_A Internalin; leucine ric 100.0 2.7E-28 9.2E-33 261.2 26.1 282 81-387 43-326 (347)
46 3zyj_A Leucine-rich repeat-con 100.0 3.1E-28 1.1E-32 269.5 24.5 226 106-334 64-292 (440)
47 3zyi_A Leucine-rich repeat-con 100.0 3.1E-28 1.1E-32 270.5 24.4 226 106-334 75-303 (452)
48 2z80_A TOLL-like receptor 2, v 100.0 8.5E-29 2.9E-33 265.8 16.9 270 110-389 35-318 (353)
49 1wwl_A Monocyte differentiatio 100.0 3.4E-30 1.2E-34 271.8 5.7 246 81-335 42-310 (312)
50 1ozn_A Reticulon 4 receptor; N 100.0 1.3E-28 4.3E-33 256.2 16.5 252 85-342 14-269 (285)
51 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-27 1.1E-31 273.4 29.5 176 52-240 11-187 (635)
52 4fcg_A Uncharacterized protein 100.0 5.3E-28 1.8E-32 256.6 19.9 225 128-385 79-314 (328)
53 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-27 4.7E-32 264.8 24.1 280 80-386 62-353 (457)
54 3zyi_A Leucine-rich repeat-con 100.0 2.2E-27 7.5E-32 263.6 25.7 250 107-389 55-307 (452)
55 3zyj_A Leucine-rich repeat-con 100.0 2.2E-27 7.5E-32 262.7 25.3 251 107-389 44-296 (440)
56 2z66_A Variable lymphocyte rec 100.0 3.3E-27 1.1E-31 248.2 23.6 229 109-342 10-244 (306)
57 1jl5_A Outer protein YOPM; leu 99.9 6.8E-26 2.3E-30 251.0 31.7 261 81-385 90-350 (454)
58 1jl5_A Outer protein YOPM; leu 99.9 2.8E-27 9.7E-32 262.1 19.2 268 82-386 11-291 (454)
59 1ozn_A Reticulon 4 receptor; N 99.9 2.3E-27 7.9E-32 246.7 17.2 237 82-319 32-270 (285)
60 1wwl_A Monocyte differentiatio 99.9 6.2E-29 2.1E-33 262.1 2.7 248 101-364 38-310 (312)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2.4E-28 8.3E-33 258.2 5.6 264 83-365 11-278 (317)
62 3g06_A SSPH2 (leucine-rich rep 99.9 9.9E-25 3.4E-29 249.3 29.9 287 54-388 12-300 (622)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.8E-27 9.7E-32 250.0 7.2 246 81-340 33-282 (317)
64 2z62_A TOLL-like receptor 4, v 99.9 1.7E-25 5.8E-30 231.4 20.4 208 107-338 29-241 (276)
65 2o6q_A Variable lymphocyte rec 99.9 3.7E-25 1.3E-29 228.1 22.0 215 61-287 3-218 (270)
66 3oja_A Leucine-rich immune mol 99.9 8.4E-27 2.9E-31 260.8 9.4 225 104-342 32-259 (487)
67 2z62_A TOLL-like receptor 4, v 99.9 2.5E-25 8.7E-30 230.1 17.5 227 61-289 1-239 (276)
68 3oja_A Leucine-rich immune mol 99.9 3.8E-26 1.3E-30 255.5 10.8 236 80-329 32-270 (487)
69 1z7x_W Ribonuclease inhibitor; 99.9 1.7E-27 5.8E-32 265.1 -5.0 304 82-385 56-411 (461)
70 3rfs_A Internalin B, repeat mo 99.9 1E-24 3.5E-29 225.0 13.3 223 83-342 20-243 (272)
71 3g06_A SSPH2 (leucine-rich rep 99.9 8.1E-23 2.8E-27 233.5 28.3 240 82-366 61-300 (622)
72 1z7x_W Ribonuclease inhibitor; 99.9 5.3E-27 1.8E-31 261.1 -6.3 298 82-384 28-382 (461)
73 4glp_A Monocyte differentiatio 99.9 9.7E-24 3.3E-28 222.1 17.6 223 106-334 64-307 (310)
74 2o6q_A Variable lymphocyte rec 99.9 1.6E-22 5.5E-27 208.3 23.8 202 107-335 17-219 (270)
75 3rfs_A Internalin B, repeat mo 99.9 2.8E-23 9.5E-28 214.3 17.3 203 81-294 40-242 (272)
76 1p9a_G Platelet glycoprotein I 99.9 1.1E-22 3.8E-27 211.6 21.2 200 102-334 6-208 (290)
77 3m19_A Variable lymphocyte rec 99.9 7.3E-23 2.5E-27 208.5 18.1 187 66-264 6-192 (251)
78 2xwt_C Thyrotropin receptor; s 99.9 4.5E-23 1.6E-27 208.4 15.9 195 107-307 32-236 (239)
79 1p9a_G Platelet glycoprotein I 99.9 2.3E-22 7.7E-27 209.3 21.0 200 81-287 9-208 (290)
80 4glp_A Monocyte differentiatio 99.9 7.9E-23 2.7E-27 215.1 12.0 224 83-311 65-308 (310)
81 2xwt_C Thyrotropin receptor; s 99.9 3.6E-22 1.2E-26 201.8 15.6 218 61-284 6-236 (239)
82 2ast_B S-phase kinase-associat 99.9 1.7E-24 6E-29 230.4 -1.7 212 62-285 35-258 (336)
83 3goz_A Leucine-rich repeat-con 99.9 3.7E-24 1.3E-28 230.4 0.8 178 87-265 3-210 (362)
84 4ay9_X Follicle-stimulating ho 99.9 7.1E-22 2.4E-26 211.5 17.8 244 63-331 7-256 (350)
85 3goz_A Leucine-rich repeat-con 99.9 5.3E-24 1.8E-28 229.2 0.3 254 110-364 2-298 (362)
86 3m19_A Variable lymphocyte rec 99.9 3.1E-21 1.1E-25 196.4 20.6 179 106-288 14-193 (251)
87 2ca6_A RAN GTPase-activating p 99.9 3.2E-24 1.1E-28 233.0 -2.5 191 97-287 23-257 (386)
88 2o6s_A Variable lymphocyte rec 99.9 9.2E-22 3.1E-26 194.2 15.2 182 61-250 3-188 (208)
89 2ca6_A RAN GTPase-activating p 99.9 1E-23 3.5E-28 229.1 0.5 242 121-366 23-319 (386)
90 4ay9_X Follicle-stimulating ho 99.9 3.5E-21 1.2E-25 206.1 17.6 240 109-383 12-257 (350)
91 2ast_B S-phase kinase-associat 99.9 3.8E-23 1.3E-27 220.0 1.5 250 106-367 47-310 (336)
92 1h6u_A Internalin H; cell adhe 99.9 3.1E-21 1.1E-25 202.6 15.9 193 103-334 38-230 (308)
93 1h6u_A Internalin H; cell adhe 99.9 4.6E-21 1.6E-25 201.3 16.7 191 81-287 40-230 (308)
94 3cvr_A Invasion plasmid antige 99.8 4.2E-21 1.4E-25 216.7 12.6 214 56-321 35-254 (571)
95 2o6s_A Variable lymphocyte rec 99.8 3.4E-20 1.1E-24 183.0 15.8 128 109-239 10-137 (208)
96 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.6E-24 205.2 19.3 148 177-344 99-253 (571)
97 2v9t_B SLIT homolog 2 protein 99.8 2.1E-19 7.1E-24 178.9 16.1 160 61-240 7-166 (220)
98 3ogk_B Coronatine-insensitive 99.8 1.7E-22 5.7E-27 232.2 -8.8 295 84-384 140-500 (592)
99 3e6j_A Variable lymphocyte rec 99.8 4.8E-19 1.7E-23 177.4 16.6 160 58-240 14-173 (229)
100 2v70_A SLIT-2, SLIT homolog 2 99.8 4.9E-19 1.7E-23 176.2 15.8 152 86-240 15-167 (220)
101 3ogk_B Coronatine-insensitive 99.8 5.5E-21 1.9E-25 219.5 -1.7 300 81-387 163-528 (592)
102 2v9t_B SLIT homolog 2 protein 99.8 2.2E-18 7.6E-23 171.5 16.2 152 109-264 14-165 (220)
103 2xot_A Amphoterin-induced prot 99.8 1E-18 3.5E-23 187.7 14.7 175 86-264 22-202 (361)
104 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.8E-23 179.6 15.4 169 105-287 45-213 (291)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 2.3E-18 7.8E-23 171.4 15.0 153 109-265 14-167 (220)
106 2xot_A Amphoterin-induced prot 99.8 7.2E-19 2.5E-23 188.9 12.2 181 60-240 13-203 (361)
107 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.3E-23 181.1 13.1 169 82-265 46-214 (291)
108 4b8c_D Glucose-repressible alc 99.8 6.1E-20 2.1E-24 214.6 1.3 189 34-240 131-330 (727)
109 3e6j_A Variable lymphocyte rec 99.8 9.2E-18 3.2E-22 168.1 16.9 127 109-239 22-148 (229)
110 1m9s_A Internalin B; cell inva 99.8 3.6E-18 1.2E-22 194.8 15.4 171 81-266 42-212 (605)
111 1m9s_A Internalin B; cell inva 99.8 2.6E-18 8.9E-23 195.9 13.6 190 82-287 21-210 (605)
112 4ezg_A Putative uncharacterize 99.7 9.6E-18 3.3E-22 163.8 11.4 149 82-238 44-193 (197)
113 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.5E-22 162.2 12.9 155 102-265 40-195 (197)
114 1xeu_A Internalin C; cellular 99.7 2.2E-18 7.5E-23 176.5 6.0 149 126-287 37-185 (263)
115 2p1m_B Transport inhibitor res 99.7 8.7E-20 3E-24 209.5 -7.4 247 81-329 104-405 (594)
116 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.7E-22 170.5 9.2 171 81-267 18-188 (263)
117 1dce_A Protein (RAB geranylger 99.7 2.4E-19 8.2E-24 203.3 -6.7 189 151-367 346-550 (567)
118 4aoj_A High affinity nerve gro 99.7 5E-17 1.7E-21 171.1 10.6 91 624-714 41-137 (329)
119 4asz_A BDNF/NT-3 growth factor 99.7 4E-17 1.4E-21 169.5 9.4 91 624-714 13-109 (299)
120 4b8c_D Glucose-repressible alc 99.7 7.1E-18 2.4E-22 197.1 3.9 185 106-315 173-359 (727)
121 1w8a_A SLIT protein; signaling 99.7 1.4E-16 4.7E-21 154.9 12.4 127 86-215 12-139 (192)
122 1dce_A Protein (RAB geranylger 99.7 4.1E-19 1.4E-23 201.4 -6.6 195 103-304 346-567 (567)
123 2p1m_B Transport inhibitor res 99.7 3.9E-19 1.3E-23 204.1 -7.0 298 81-384 129-493 (594)
124 2ell_A Acidic leucine-rich nuc 99.7 3E-16 1E-20 148.9 13.0 134 104-239 22-160 (168)
125 1w8a_A SLIT protein; signaling 99.7 4.4E-16 1.5E-20 151.3 13.4 129 109-240 11-140 (192)
126 2o6r_A Variable lymphocyte rec 99.7 6E-16 2.1E-20 148.2 13.2 135 61-215 3-137 (177)
127 4gt4_A Tyrosine-protein kinase 99.6 1.9E-16 6.4E-21 165.1 9.6 89 626-714 28-123 (308)
128 2ell_A Acidic leucine-rich nuc 99.6 6.1E-16 2.1E-20 146.8 10.5 138 81-221 23-165 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 5.7E-16 1.9E-20 143.8 9.6 128 105-234 16-148 (149)
130 2wfh_A SLIT homolog 2 protein 99.6 2.1E-15 7.3E-20 146.5 13.2 125 87-215 15-139 (193)
131 3omv_A RAF proto-oncogene seri 99.6 5.5E-16 1.9E-20 161.0 9.1 95 622-719 34-130 (307)
132 2wfh_A SLIT homolog 2 protein 99.6 4.2E-15 1.4E-19 144.5 13.6 128 109-240 13-140 (193)
133 4b9d_A Serine/threonine-protei 99.6 1E-15 3.6E-20 161.3 9.5 92 624-715 24-118 (350)
134 4fih_A Serine/threonine-protei 99.6 5.6E-16 1.9E-20 163.2 7.1 91 624-714 74-165 (346)
135 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 141.9 8.2 129 81-211 16-149 (149)
136 2o6r_A Variable lymphocyte rec 99.6 1.2E-14 4.1E-19 139.1 15.0 130 108-240 9-138 (177)
137 4fie_A Serine/threonine-protei 99.6 1.2E-15 4.2E-20 164.6 8.2 91 624-714 151-242 (423)
138 3hmm_A TGF-beta receptor type- 99.6 1.2E-15 4.1E-20 159.2 7.7 89 625-715 4-96 (303)
139 3sb4_A Hypothetical leucine ri 99.6 1.3E-15 4.4E-20 161.3 8.1 278 81-378 24-327 (329)
140 3fpq_A Serine/threonine-protei 99.6 3.5E-15 1.2E-19 153.8 10.0 90 627-716 29-125 (290)
141 4aw0_A HPDK1, 3-phosphoinositi 99.6 2.1E-15 7E-20 156.4 7.1 96 624-719 32-131 (311)
142 4g31_A Eukaryotic translation 99.5 8.1E-15 2.8E-19 152.3 9.0 92 625-716 6-111 (299)
143 3sb4_A Hypothetical leucine ri 99.5 7.3E-15 2.5E-19 155.5 8.1 260 81-356 48-327 (329)
144 4g3f_A NF-kappa-beta-inducing 99.5 1.2E-14 4.1E-19 152.5 7.6 91 623-718 57-148 (336)
145 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-14 8.3E-19 136.8 8.9 134 100-239 13-153 (176)
146 4ase_A Vascular endothelial gr 99.5 1.7E-14 5.9E-19 153.0 8.5 100 615-714 55-163 (353)
147 4fdw_A Leucine rich hypothetic 99.5 6.2E-13 2.1E-17 144.1 20.8 260 105-383 112-381 (401)
148 4fdw_A Leucine rich hypothetic 99.5 6.2E-13 2.1E-17 144.1 20.1 264 82-365 113-385 (401)
149 1ds9_A Outer arm dynein; leuci 99.5 1.7E-16 5.7E-21 155.1 -7.7 150 83-239 19-185 (198)
150 3hyh_A Carbon catabolite-derep 99.5 3E-14 1E-18 145.6 8.6 95 624-719 13-111 (275)
151 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 129.7 11.5 105 85-192 12-116 (170)
152 1a9n_A U2A', U2A'; complex (nu 99.5 3.4E-14 1.2E-18 135.8 6.3 131 126-262 15-151 (176)
153 1ds9_A Outer arm dynein; leuci 99.5 1.9E-16 6.5E-21 154.7 -9.7 134 102-240 14-154 (198)
154 3ubd_A Ribosomal protein S6 ki 99.5 8.6E-15 2.9E-19 151.7 2.0 96 624-719 24-125 (304)
155 3uto_A Twitchin; kinase, muscl 99.4 1.6E-13 5.4E-18 155.6 10.8 96 624-719 157-253 (573)
156 3g39_A Variable lymphocyte rec 99.4 6.7E-13 2.3E-17 126.0 11.9 105 108-215 11-115 (170)
157 4b99_A Mitogen-activated prote 99.4 2.4E-13 8.2E-18 146.8 8.5 93 624-717 54-155 (398)
158 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.7E-17 124.3 12.0 104 85-191 15-118 (174)
159 2c30_A Serine/threonine-protei 99.4 9.1E-13 3.1E-17 138.8 11.0 103 612-714 23-136 (321)
160 3uim_A Brassinosteroid insensi 99.4 3.7E-13 1.3E-17 141.9 7.7 107 609-715 15-122 (326)
161 2r9u_A Variable lymphocyte rec 99.4 2.4E-12 8.2E-17 122.6 11.9 104 109-215 15-118 (174)
162 2qkw_B Protein kinase; three-h 99.3 5.4E-13 1.9E-17 140.4 5.7 101 614-714 29-129 (321)
163 3s95_A LIMK-1, LIM domain kina 99.3 2.7E-12 9.4E-17 134.3 10.4 92 624-715 10-102 (310)
164 3fxz_A Serine/threonine-protei 99.3 3.4E-12 1.2E-16 132.8 10.7 92 623-714 19-111 (297)
165 3fe3_A MAP/microtubule affinit 99.3 3.4E-12 1.2E-16 134.7 10.0 95 622-716 13-110 (328)
166 3v5w_A G-protein coupled recep 99.3 3.1E-12 1.1E-16 144.6 9.9 96 624-719 189-291 (689)
167 4aw2_A Serine/threonine-protei 99.3 1.4E-12 5E-17 142.8 7.0 101 614-714 64-168 (437)
168 2qol_A Ephrin receptor; recept 99.3 2.5E-12 8.5E-17 138.4 8.5 93 624-716 45-142 (373)
169 2nru_A Interleukin-1 receptor- 99.3 9.4E-12 3.2E-16 129.9 12.5 102 611-713 12-123 (307)
170 3cbl_A C-FES, proto-oncogene t 99.3 1.7E-12 6E-17 139.9 6.5 96 620-715 110-207 (377)
171 2ifg_A High affinity nerve gro 99.3 4.6E-12 1.6E-16 134.9 9.6 110 62-191 4-116 (347)
172 4f9c_A Cell division cycle 7-r 99.3 6.9E-12 2.4E-16 133.8 10.9 91 621-713 18-113 (361)
173 4hcu_A Tyrosine-protein kinase 99.3 5.9E-12 2E-16 128.8 9.5 93 624-717 10-102 (269)
174 3kul_A Ephrin type-A receptor 99.3 5.3E-12 1.8E-16 133.2 8.8 93 624-716 49-146 (325)
175 3uqc_A Probable conserved tran 99.3 6.5E-12 2.2E-16 129.9 9.1 91 624-714 31-125 (286)
176 3qd2_B Eukaryotic translation 99.3 9.4E-12 3.2E-16 131.2 9.9 93 624-716 6-157 (332)
177 2yab_A Death-associated protei 99.3 1.4E-11 4.7E-16 131.8 10.8 93 624-716 12-111 (361)
178 1opk_A P150, C-ABL, proto-onco 99.2 2.8E-12 9.6E-17 143.4 5.2 95 619-714 215-310 (495)
179 2vd5_A DMPK protein; serine/th 99.2 5.4E-12 1.9E-16 137.3 7.3 102 614-715 51-156 (412)
180 2x4f_A Myosin light chain kina 99.2 5.9E-12 2E-16 135.4 7.4 89 627-715 92-181 (373)
181 3v8s_A RHO-associated protein 99.2 3.4E-12 1.2E-16 138.7 5.5 99 616-714 61-163 (410)
182 3ugc_A Tyrosine-protein kinase 99.2 6.9E-12 2.3E-16 130.2 7.4 93 624-716 10-109 (295)
183 3sxs_A Cytoplasmic tyrosine-pr 99.2 6.4E-12 2.2E-16 128.4 7.0 92 623-715 7-98 (268)
184 2ac3_A MAP kinase-interacting 99.2 2E-11 6.7E-16 128.0 10.9 91 625-715 13-106 (316)
185 3zgw_A Maternal embryonic leuc 99.2 1.2E-11 3.9E-16 131.6 9.1 94 623-716 9-104 (347)
186 1kob_A Twitchin; kinase, intra 99.2 1.6E-11 5.4E-16 132.6 10.3 92 624-715 51-143 (387)
187 2bdw_A Hypothetical protein K1 99.2 1.3E-11 4.5E-16 132.2 9.5 93 624-716 29-124 (362)
188 3gen_A Tyrosine-protein kinase 99.2 8.8E-12 3E-16 128.5 7.8 92 622-714 22-113 (283)
189 1tki_A Titin; serine kinase, m 99.2 2.2E-11 7.5E-16 128.2 10.8 92 623-715 4-96 (321)
190 3kmu_A ILK, integrin-linked ki 99.2 8.1E-12 2.8E-16 127.6 7.2 91 624-715 10-104 (271)
191 3p86_A Serine/threonine-protei 99.2 1.3E-11 4.6E-16 129.0 9.0 98 617-715 30-129 (309)
192 1qcf_A Haematopoetic cell kina 99.2 1.1E-11 3.7E-16 137.1 8.4 96 617-714 181-276 (454)
193 4fvq_A Tyrosine-protein kinase 99.2 1.3E-11 4.3E-16 127.7 7.9 93 624-716 8-108 (289)
194 2y0a_A Death-associated protei 99.2 3E-11 1E-15 127.4 10.8 92 625-716 12-110 (326)
195 1o6l_A RAC-beta serine/threoni 99.2 1.5E-11 5E-16 130.3 8.5 93 624-716 5-101 (337)
196 2clq_A Mitogen-activated prote 99.2 2.6E-11 9E-16 125.6 10.1 90 625-714 23-113 (295)
197 4eqm_A Protein kinase; transfe 99.2 2.4E-11 8.3E-16 126.1 9.7 92 624-715 11-106 (294)
198 3t9t_A Tyrosine-protein kinase 99.2 1.3E-11 4.4E-16 125.9 7.5 92 624-716 8-99 (267)
199 3uc3_A Serine/threonine-protei 99.2 1.8E-11 6.2E-16 131.0 8.9 92 623-715 19-111 (361)
200 2psq_A Fibroblast growth facto 99.2 2E-11 6.8E-16 131.2 9.0 93 623-715 80-182 (370)
201 3soc_A Activin receptor type-2 99.2 1.3E-11 4.6E-16 129.8 7.3 92 622-715 22-117 (322)
202 3f3z_A Calcium/calmodulin-depe 99.2 2.8E-11 9.7E-16 124.2 9.5 93 624-716 9-102 (277)
203 3gni_B Strad alpha; kinase fol 99.2 3E-11 1E-15 130.7 10.1 92 623-714 24-120 (389)
204 3a62_A Ribosomal protein S6 ki 99.2 1.8E-11 6.1E-16 129.2 8.0 94 623-716 16-117 (327)
205 3vhe_A Vascular endothelial gr 99.2 1.6E-11 5.4E-16 131.3 7.4 102 614-715 12-122 (359)
206 1k9a_A Carboxyl-terminal SRC k 99.2 3.1E-11 1.1E-15 133.2 9.9 92 621-715 190-282 (450)
207 3eqc_A Dual specificity mitoge 99.2 2.1E-11 7.1E-16 130.4 8.2 92 624-715 33-126 (360)
208 2ifg_A High affinity nerve gro 99.2 4.1E-11 1.4E-15 127.5 10.4 103 110-215 12-116 (347)
209 1fmk_A C-SRC, P60-SRC, tyrosin 99.2 1.8E-11 6E-16 135.3 7.7 93 619-713 179-271 (452)
210 2w4o_A Calcium/calmodulin-depe 99.2 2.8E-11 9.7E-16 128.9 9.1 92 623-716 52-144 (349)
211 3dtc_A Mitogen-activated prote 99.2 2.2E-11 7.5E-16 124.5 7.9 90 624-714 7-100 (271)
212 1luf_A Muscle-specific tyrosin 99.2 2.7E-11 9.4E-16 128.4 8.8 96 619-714 42-144 (343)
213 3tki_A Serine/threonine-protei 99.2 1.9E-11 6.4E-16 128.8 7.4 93 624-716 7-101 (323)
214 1fot_A TPK1 delta, CAMP-depend 99.2 2.5E-11 8.5E-16 127.5 8.2 93 624-716 6-102 (318)
215 3soa_A Calcium/calmodulin-depe 99.2 2.1E-11 7.1E-16 134.0 7.8 93 624-716 11-106 (444)
216 3kn6_A Ribosomal protein S6 ki 99.2 5.5E-11 1.9E-15 125.3 10.7 85 629-716 16-102 (325)
217 3niz_A Rhodanese family protei 99.2 3.1E-11 1.1E-15 126.4 8.6 93 623-716 20-114 (311)
218 3gxj_A TGF-beta receptor type- 99.2 4.6E-11 1.6E-15 124.2 9.9 87 624-714 3-95 (303)
219 3q5i_A Protein kinase; CDPK, m 99.2 4.3E-11 1.5E-15 134.1 10.1 94 623-716 35-142 (504)
220 3c0i_A Peripheral plasma membr 99.2 4.5E-11 1.5E-15 127.4 9.7 90 624-713 24-119 (351)
221 3a8x_A Protein kinase C IOTA t 99.2 4.4E-11 1.5E-15 127.2 9.5 93 624-716 9-106 (345)
222 4fs7_A Uncharacterized protein 99.2 1.3E-09 4.4E-14 118.1 21.2 282 80-381 69-375 (394)
223 3txo_A PKC-L, NPKC-ETA, protei 99.2 3.8E-11 1.3E-15 128.0 8.9 94 623-716 22-120 (353)
224 3lxl_A Tyrosine-protein kinase 99.2 4.5E-11 1.5E-15 126.0 9.4 91 624-714 23-120 (327)
225 2h8h_A Proto-oncogene tyrosine 99.2 2.2E-11 7.4E-16 137.5 7.1 94 618-713 261-354 (535)
226 3hko_A Calcium/calmodulin-depe 99.2 3.7E-11 1.2E-15 127.6 8.4 93 620-712 22-120 (345)
227 2jam_A Calcium/calmodulin-depe 99.2 5.7E-11 1.9E-15 123.8 9.7 92 624-715 9-101 (304)
228 2j7t_A Serine/threonine-protei 99.2 3.3E-11 1.1E-15 125.3 7.8 92 623-714 18-110 (302)
229 2ivs_A Proto-oncogene tyrosine 99.2 3.3E-11 1.1E-15 126.1 7.8 94 622-715 21-121 (314)
230 4agu_A Cyclin-dependent kinase 99.2 6.2E-11 2.1E-15 123.9 9.9 93 624-716 3-98 (311)
231 4euu_A Serine/threonine-protei 99.2 5.7E-11 1.9E-15 124.8 9.6 92 624-715 9-104 (319)
232 3un9_A NLR family member X1; l 99.2 1.1E-12 3.9E-17 140.6 -3.6 136 130-265 101-253 (372)
233 3bhy_A Death-associated protei 99.2 5.7E-11 1.9E-15 122.3 9.3 91 625-715 6-103 (283)
234 1xjd_A Protein kinase C, theta 99.2 3.7E-11 1.3E-15 127.6 8.0 95 621-715 14-113 (345)
235 2eva_A TAK1 kinase - TAB1 chim 99.2 2.6E-11 8.9E-16 126.7 6.7 87 624-715 8-94 (307)
236 1p4o_A Insulin-like growth fac 99.1 3E-11 1E-15 126.9 7.1 100 614-713 15-121 (322)
237 4fr4_A YANK1, serine/threonine 99.1 3.6E-11 1.2E-15 129.5 7.6 93 624-716 15-111 (384)
238 4e5w_A Tyrosine-protein kinase 99.1 5.1E-11 1.7E-15 123.9 8.5 92 624-715 21-120 (302)
239 3un9_A NLR family member X1; l 99.1 7.9E-13 2.7E-17 141.8 -5.5 134 154-287 101-252 (372)
240 1rdq_E PKA C-alpha, CAMP-depen 99.1 5E-11 1.7E-15 126.9 8.4 93 624-716 41-137 (350)
241 3cok_A Serine/threonine-protei 99.1 3.9E-11 1.3E-15 123.2 7.3 93 624-716 11-107 (278)
242 2a2a_A Death-associated protei 99.1 8.4E-11 2.9E-15 123.6 10.0 92 624-715 12-110 (321)
243 3l9p_A Anaplastic lymphoma kin 99.1 4.1E-11 1.4E-15 128.5 7.7 92 623-714 70-168 (367)
244 4ejn_A RAC-alpha serine/threon 99.1 1.8E-11 6E-16 135.1 4.9 93 623-715 147-243 (446)
245 3lij_A Calcium/calmodulin depe 99.1 5.5E-11 1.9E-15 132.9 9.0 92 625-716 38-132 (494)
246 3nyv_A Calmodulin-domain prote 99.1 8.3E-11 2.8E-15 131.2 10.4 94 624-717 26-123 (484)
247 2w1i_A JAK2; chromosomal rearr 99.1 6.3E-11 2.2E-15 124.8 8.9 93 624-716 41-140 (326)
248 1x8b_A WEE1HU, WEE1-like prote 99.1 1.1E-10 3.7E-15 120.3 10.3 91 624-714 11-105 (289)
249 4dc2_A Protein kinase C IOTA t 99.1 4.2E-11 1.4E-15 129.4 7.5 94 623-716 51-149 (396)
250 2i1m_A Macrophage colony-stimu 99.1 6.7E-11 2.3E-15 124.9 8.7 97 618-714 40-144 (333)
251 1qpc_A LCK kinase; alpha beta 99.1 6.4E-11 2.2E-15 121.7 8.2 91 622-714 11-101 (279)
252 2buj_A Serine/threonine-protei 99.1 7.1E-11 2.4E-15 123.8 8.7 91 623-713 28-123 (317)
253 2ozo_A Tyrosine-protein kinase 99.1 7.6E-11 2.6E-15 135.1 9.6 85 631-716 343-431 (613)
254 1ob3_A PFPK5, cell division co 99.1 6.9E-11 2.4E-15 122.2 8.3 91 624-715 2-94 (288)
255 1t46_A HOMO sapiens V-KIT hard 99.1 6.6E-11 2.3E-15 123.7 8.3 95 621-715 20-122 (313)
256 1rjb_A FL cytokine receptor; k 99.1 5.6E-11 1.9E-15 126.2 7.7 97 619-715 40-144 (344)
257 3ork_A Serine/threonine protei 99.1 2.8E-11 9.5E-16 126.7 5.2 92 624-715 12-111 (311)
258 4fl3_A Tyrosine-protein kinase 99.1 7.3E-11 2.5E-15 135.7 9.1 86 630-716 375-465 (635)
259 2rku_A Serine/threonine-protei 99.1 1.1E-10 3.6E-15 121.1 9.5 92 624-715 15-110 (294)
260 2pvf_A Fibroblast growth facto 99.1 1E-10 3.5E-15 123.7 9.5 94 622-715 33-136 (334)
261 2y94_A 5'-AMP-activated protei 99.1 5.5E-11 1.9E-15 131.7 7.7 93 624-716 16-112 (476)
262 3kk8_A Calcium/calmodulin depe 99.1 1.4E-10 4.7E-15 119.5 10.1 93 623-715 5-100 (284)
263 1mqb_A Ephrin type-A receptor 99.1 7.9E-11 2.7E-15 124.5 8.6 92 624-715 44-141 (333)
264 1u59_A Tyrosine-protein kinase 99.1 1.3E-10 4.4E-15 120.0 10.0 90 626-716 11-105 (287)
265 2h6d_A 5'-AMP-activated protei 99.1 1.1E-10 3.6E-15 119.7 9.3 93 623-715 10-106 (276)
266 3kfa_A Tyrosine-protein kinase 99.1 4.6E-11 1.6E-15 123.3 6.5 95 619-714 8-103 (288)
267 3e7e_A HBUB1, BUB1A, mitotic c 99.1 8.6E-11 3E-15 125.9 8.8 91 620-713 61-160 (365)
268 3q4u_A Activin receptor type-1 99.1 1.1E-10 3.7E-15 121.3 9.3 88 623-714 7-100 (301)
269 1phk_A Phosphorylase kinase; g 99.1 1.2E-10 4.2E-15 120.7 9.7 93 623-715 16-119 (298)
270 1u5q_A Serine/threonine protei 99.1 8.3E-11 2.8E-15 125.2 8.5 89 625-714 55-147 (348)
271 3i6u_A CDS1, serine/threonine- 99.1 3.5E-11 1.2E-15 131.5 5.8 93 623-716 134-235 (419)
272 3a7i_A MST3 kinase, serine/thr 99.1 1.3E-10 4.3E-15 121.1 9.7 91 624-714 22-114 (303)
273 2zv2_A Calcium/calmodulin-depe 99.1 3.3E-11 1.1E-15 125.2 5.2 91 623-713 12-131 (298)
274 3p1a_A MYT1 kinase, membrane-a 99.1 6.8E-11 2.3E-15 123.8 7.6 92 624-716 57-152 (311)
275 2h34_A Serine/threonine-protei 99.1 1.2E-10 4E-15 121.8 9.3 92 624-715 34-129 (309)
276 2i0e_A Protein kinase C-beta I 99.1 8E-11 2.8E-15 125.4 8.1 95 622-716 18-117 (353)
277 2owb_A Serine/threonine-protei 99.1 1.2E-10 4.2E-15 123.1 9.4 92 624-715 41-136 (335)
278 3mwu_A Calmodulin-domain prote 99.1 8.5E-11 2.9E-15 131.1 8.5 93 624-716 22-117 (486)
279 3tt0_A Basic fibroblast growth 99.1 1.1E-10 3.6E-15 126.1 9.0 93 623-715 68-170 (382)
280 1t4h_A Serine/threonine-protei 99.1 1.5E-10 5.3E-15 119.6 9.9 90 626-715 28-124 (290)
281 3fdn_A Serine/threonine-protei 99.1 8E-11 2.7E-15 121.0 7.7 93 623-715 8-104 (279)
282 1mp8_A Focal adhesion kinase 1 99.1 7.1E-11 2.4E-15 121.6 7.3 92 623-715 14-110 (281)
283 3is5_A Calcium-dependent prote 99.1 1.9E-10 6.5E-15 118.7 10.4 89 625-713 23-113 (285)
284 3qup_A Tyrosine-protein kinase 99.1 9.5E-11 3.2E-15 123.2 8.3 97 618-714 17-125 (323)
285 2acx_A G protein-coupled recep 99.1 1.1E-10 3.7E-15 131.4 9.2 93 623-715 183-279 (576)
286 2wqm_A Serine/threonine-protei 99.1 2.2E-10 7.5E-15 119.6 10.9 90 624-713 32-125 (310)
287 3o0g_A Cell division protein k 99.1 1.3E-10 4.5E-15 120.3 9.1 90 624-714 2-94 (292)
288 4f0f_A Serine/threonine-protei 99.1 7.8E-11 2.7E-15 121.6 7.0 94 623-718 18-119 (287)
289 3pg1_A Mitogen-activated prote 99.1 8.4E-11 2.9E-15 125.8 7.5 104 615-719 13-132 (362)
290 3h4j_B AMPK kdaid, SNF1-like p 99.1 7.1E-11 2.4E-15 124.9 6.7 92 624-716 9-104 (336)
291 3lxp_A Non-receptor tyrosine-p 99.1 3.3E-10 1.1E-14 118.9 11.7 90 626-715 33-130 (318)
292 2pmi_A Negative RE, cyclin-dep 99.1 1.7E-10 5.8E-15 121.0 9.4 91 623-714 4-96 (317)
293 1zy4_A Serine/threonine-protei 99.1 1.2E-10 4E-15 120.9 8.0 91 624-715 6-110 (303)
294 4eut_A Serine/threonine-protei 99.1 1.6E-10 5.6E-15 125.2 9.2 92 624-715 9-104 (396)
295 2ycf_A Serine/threonine-protei 99.1 8.9E-11 3.1E-15 123.4 6.8 92 624-716 10-110 (322)
296 2r5t_A Serine/threonine-protei 99.1 7.5E-11 2.6E-15 126.6 6.2 93 624-716 38-135 (373)
297 2yfx_A Tyrosine-protein kinase 99.1 1.3E-10 4.5E-15 122.4 7.9 93 623-715 29-128 (327)
298 3gbz_A Kinase, CMGC CDK; ssgci 99.1 1.2E-10 4.1E-15 122.9 7.5 93 623-716 33-128 (329)
299 2yex_A Serine/threonine-protei 99.1 9.5E-11 3.2E-15 120.1 6.5 92 624-715 7-100 (276)
300 1xbb_A Tyrosine-protein kinase 99.1 1.4E-10 4.7E-15 120.1 7.7 93 623-716 15-113 (291)
301 2y7j_A Phosphorylase B kinase 99.1 2.4E-10 8.2E-15 122.5 9.8 94 622-715 92-195 (365)
302 2qr7_A Ribosomal protein S6 ki 99.1 1.5E-10 5.2E-15 122.8 8.1 89 624-716 22-112 (342)
303 3c1x_A Hepatocyte growth facto 99.1 1.1E-10 3.6E-15 125.6 7.0 91 626-716 91-187 (373)
304 2eue_A Carbon catabolite derep 99.1 2.8E-10 9.7E-15 116.6 9.9 92 624-716 13-108 (275)
305 2i6l_A Mitogen-activated prote 99.1 1.4E-10 4.7E-15 121.5 7.7 90 624-714 11-115 (320)
306 2vgo_A Serine/threonine-protei 99.1 1.2E-10 4.2E-15 119.9 7.2 92 624-715 14-109 (284)
307 2xir_A Vascular endothelial gr 99.1 1.9E-10 6.6E-15 120.3 8.7 102 614-715 17-127 (316)
308 3com_A Serine/threonine-protei 99.1 1.7E-10 5.8E-15 120.7 7.8 90 622-713 27-117 (314)
309 2w5a_A Serine/threonine-protei 99.1 3.4E-10 1.2E-14 116.2 9.8 90 624-713 6-100 (279)
310 3poz_A Epidermal growth factor 99.0 2.3E-10 7.8E-15 120.6 8.5 92 624-716 15-112 (327)
311 3mdy_A Bone morphogenetic prot 99.0 2.5E-10 8.6E-15 120.6 8.8 89 622-714 35-129 (337)
312 3n9x_A Phosphotransferase; mal 99.0 2E-10 6.7E-15 126.1 8.2 92 623-715 25-124 (432)
313 3f66_A Hepatocyte growth facto 99.0 2.5E-10 8.7E-15 118.4 8.6 92 625-716 26-123 (298)
314 2wei_A Calmodulin-domain prote 99.0 3.6E-10 1.2E-14 116.6 9.6 92 624-715 22-116 (287)
315 3cc6_A Protein tyrosine kinase 99.0 2.6E-10 9E-15 117.2 8.3 92 623-715 11-107 (281)
316 3pls_A Macrophage-stimulating 99.0 3.6E-10 1.2E-14 117.1 9.4 91 626-716 23-119 (298)
317 3mtl_A Cell division protein k 99.0 8.8E-11 3E-15 123.7 4.7 95 624-719 2-98 (324)
318 3c4z_A Rhodopsin kinase; Ser/T 99.0 2.7E-10 9.3E-15 127.7 8.9 91 624-714 185-279 (543)
319 2pml_X PFPK7, Ser/Thr protein 99.0 5.8E-11 2E-15 126.2 3.2 87 623-710 30-133 (348)
320 1b6c_B TGF-B superfamily recep 99.0 2.8E-10 9.7E-15 120.5 8.4 88 623-714 41-134 (342)
321 3rp9_A Mitogen-activated prote 99.0 1.8E-10 6.1E-15 127.5 7.0 92 624-716 53-152 (458)
322 1vzo_A Ribosomal protein S6 ki 99.0 1.1E-10 3.7E-15 124.7 5.1 92 624-715 54-154 (355)
323 1fvr_A Tyrosine-protein kinase 99.0 4.1E-10 1.4E-14 118.6 9.4 92 624-715 25-121 (327)
324 2vwi_A Serine/threonine-protei 99.0 1.6E-10 5.4E-15 120.1 5.8 93 621-713 12-106 (303)
325 2x7f_A TRAF2 and NCK-interacti 99.0 3E-10 1E-14 119.5 7.9 100 614-714 14-121 (326)
326 3brb_A Proto-oncogene tyrosine 99.0 2.3E-10 7.7E-15 119.7 6.7 96 617-712 27-133 (313)
327 3llt_A Serine/threonine kinase 99.0 5.1E-10 1.8E-14 119.5 9.5 102 612-715 23-130 (360)
328 4aaa_A Cyclin-dependent kinase 99.0 3.7E-10 1.3E-14 119.2 8.2 92 624-715 25-119 (331)
329 1byg_A CSK, protein (C-termina 99.0 3.5E-10 1.2E-14 116.1 7.6 89 623-714 20-109 (278)
330 2izr_A Casein kinase I isoform 99.0 2.9E-10 1E-14 119.9 7.2 88 624-714 9-98 (330)
331 3dbq_A Dual specificity protei 99.0 4.6E-10 1.6E-14 119.2 8.7 93 624-717 9-105 (343)
332 1ua2_A CAK, cell division prot 99.0 2.7E-10 9.3E-15 121.1 6.9 93 623-716 9-107 (346)
333 2a19_B Interferon-induced, dou 99.0 3.7E-10 1.3E-14 116.1 7.7 87 624-714 11-114 (284)
334 3og7_A AKAP9-BRAF fusion prote 99.0 4.9E-10 1.7E-14 115.8 8.1 92 622-716 22-115 (289)
335 2r3i_A Cell division protein k 99.0 9.1E-10 3.1E-14 114.1 10.1 90 624-714 3-95 (299)
336 3dls_A PAS domain-containing s 99.0 1.5E-10 5.2E-15 122.5 3.9 94 623-716 23-126 (335)
337 2zmd_A Dual specificity protei 99.0 8.1E-10 2.8E-14 119.5 9.3 92 624-716 56-151 (390)
338 3lb7_A RAF proto-oncogene seri 99.0 6.6E-10 2.3E-14 116.0 8.2 93 623-718 35-129 (307)
339 2vuw_A Serine/threonine-protei 99.0 2.8E-11 9.4E-16 128.2 -2.5 89 624-713 20-155 (336)
340 4fs7_A Uncharacterized protein 99.0 1E-08 3.5E-13 111.0 17.7 261 80-360 92-376 (394)
341 2pzi_A Probable serine/threoni 99.0 2.9E-10 9.8E-15 132.3 5.7 90 624-713 80-177 (681)
342 3kex_A Receptor tyrosine-prote 99.0 2.9E-10 9.9E-15 119.7 5.2 91 624-715 13-109 (325)
343 1cm8_A Phosphorylated MAP kina 99.0 3.6E-10 1.2E-14 121.2 5.9 91 623-714 24-123 (367)
344 2j0j_A Focal adhesion kinase 1 99.0 6.7E-10 2.3E-14 128.1 8.5 94 621-715 387-485 (656)
345 3oz6_A Mitogen-activated prote 99.0 6.3E-10 2.1E-14 120.3 7.6 91 623-714 8-104 (388)
346 3ttj_A Mitogen-activated prote 98.9 4.6E-10 1.6E-14 124.2 6.3 91 623-714 61-160 (464)
347 1u46_A ACK-1, activated CDC42 98.9 3.3E-10 1.1E-14 116.9 4.7 90 624-714 18-114 (291)
348 3g2f_A Bone morphogenetic prot 98.9 1.4E-09 4.8E-14 114.8 9.6 89 623-715 12-107 (336)
349 2xrw_A Mitogen-activated prote 98.9 9.4E-10 3.2E-14 118.1 8.2 91 623-714 24-123 (371)
350 3nsz_A CK II alpha, casein kin 98.9 1.9E-09 6.4E-14 113.5 10.4 87 624-713 36-126 (330)
351 3an0_A Dual specificity mitoge 98.9 1.4E-09 4.8E-14 115.1 9.3 91 622-713 49-142 (340)
352 2b9h_A MAP kinase FUS3, mitoge 98.9 9.5E-10 3.2E-14 117.0 7.7 91 623-714 10-107 (353)
353 3lzb_A Epidermal growth factor 98.9 1.3E-09 4.3E-14 114.9 8.5 93 623-716 14-112 (327)
354 3cek_A Dual specificity protei 98.9 6.1E-10 2.1E-14 116.4 5.8 102 614-716 18-123 (313)
355 2y4i_B KSR2, HKSR2, kinase sup 98.9 1.6E-10 5.6E-15 121.0 1.1 97 617-715 26-124 (319)
356 3mi9_A Cell division protein k 98.9 1.2E-09 4.1E-14 116.3 7.8 92 624-716 17-119 (351)
357 3qyz_A Mitogen-activated prote 98.9 1.3E-09 4.3E-14 116.8 7.9 92 622-714 25-123 (364)
358 3pfq_A PKC-B, PKC-beta, protei 98.9 7.4E-10 2.5E-14 128.2 6.6 96 622-717 339-439 (674)
359 3eb0_A Putative uncharacterize 98.9 1.5E-09 5E-14 117.1 8.4 88 621-713 4-130 (383)
360 2wtk_C Serine/threonine-protei 98.9 1.8E-09 6.1E-14 112.3 8.8 89 624-713 5-100 (305)
361 1csn_A Casein kinase-1; phosph 98.9 2.2E-09 7.4E-14 111.2 9.1 90 624-716 10-101 (298)
362 4gt6_A Cell surface protein; l 98.9 5.3E-08 1.8E-12 105.3 20.4 147 84-236 66-215 (394)
363 3byv_A Rhoptry kinase; malaria 98.9 5.7E-10 1.9E-14 120.1 4.7 91 623-714 72-193 (377)
364 1nxk_A MAP kinase-activated pr 98.9 2.2E-09 7.6E-14 116.4 9.4 86 625-715 62-154 (400)
365 4exu_A Mitogen-activated prote 98.9 1.1E-09 3.8E-14 117.6 6.8 91 623-714 41-140 (371)
366 3fme_A Dual specificity mitoge 98.9 2.2E-09 7.5E-14 110.7 8.7 90 623-713 6-98 (290)
367 3m2w_A MAP kinase-activated pr 98.9 3.1E-09 1E-13 110.4 9.8 86 625-715 18-110 (299)
368 3ll6_A Cyclin G-associated kin 98.9 1.5E-09 5.1E-14 114.4 7.6 90 623-713 27-126 (337)
369 2iwi_A Serine/threonine-protei 98.9 4.7E-10 1.6E-14 117.2 3.5 94 622-715 29-134 (312)
370 3op5_A Serine/threonine-protei 98.9 8.7E-10 3E-14 118.0 5.3 94 622-716 33-147 (364)
371 3lm5_A Serine/threonine-protei 98.9 1.3E-09 4.3E-14 114.9 6.5 90 625-714 29-123 (327)
372 2fst_X Mitogen-activated prote 98.9 8.1E-10 2.8E-14 118.4 4.3 91 623-714 28-127 (367)
373 3aln_A Dual specificity mitoge 98.9 5.2E-09 1.8E-13 110.0 10.3 89 623-712 21-112 (327)
374 3g33_A Cell division protein k 98.9 2.9E-09 1E-13 111.0 8.0 92 623-715 8-113 (308)
375 2v62_A Serine/threonine-protei 98.9 1E-09 3.4E-14 116.6 4.3 91 624-715 37-146 (345)
376 2jii_A Serine/threonine-protei 98.9 1E-09 3.4E-14 117.0 4.3 85 624-714 42-151 (352)
377 3coi_A Mitogen-activated prote 98.8 1.3E-09 4.5E-14 116.1 4.9 89 624-713 24-121 (353)
378 3p23_A Serine/threonine-protei 98.8 2.4E-09 8.2E-14 117.3 7.0 90 622-715 22-112 (432)
379 2rio_A Serine/threonine-protei 98.8 4.1E-09 1.4E-13 115.6 8.8 86 626-715 17-103 (434)
380 3qa8_A MGC80376 protein; kinas 98.8 5E-10 1.7E-14 127.5 1.4 92 624-715 14-113 (676)
381 3rgf_A Cyclin-dependent kinase 98.8 6E-09 2E-13 113.2 9.7 81 629-712 26-111 (405)
382 3e3p_A Protein kinase, putativ 98.8 3.7E-09 1.3E-13 112.7 8.0 93 618-712 17-117 (360)
383 4gt6_A Cell surface protein; l 98.8 9.3E-08 3.2E-12 103.3 18.8 284 80-382 85-388 (394)
384 1blx_A Cyclin-dependent kinase 98.8 2.6E-09 8.9E-14 112.2 6.2 93 621-714 8-112 (326)
385 3uzp_A CKI-delta, CKID, casein 98.8 1.2E-08 4E-13 105.5 9.7 89 623-714 8-98 (296)
386 3fhr_A MAP kinase-activated pr 98.8 1.3E-08 4.4E-13 107.6 9.9 88 623-715 27-121 (336)
387 3q60_A ROP5B; pseudokinase, tr 98.8 5.8E-09 2E-13 111.9 6.6 90 623-714 61-181 (371)
388 2ra8_A Uncharacterized protein 98.8 2.7E-09 9.1E-14 113.5 3.6 133 199-335 169-321 (362)
389 3kvw_A DYRK2, dual specificity 98.7 2.4E-08 8.1E-13 109.3 10.6 90 624-715 97-193 (429)
390 1wak_A Serine/threonine-protei 98.7 7.1E-09 2.4E-13 112.0 6.2 89 624-714 37-138 (397)
391 1z57_A Dual specificity protei 98.7 1.8E-08 6E-13 106.2 8.9 90 624-715 14-111 (339)
392 3en9_A Glycoprotease, O-sialog 98.7 2.6E-08 9E-13 112.0 10.8 86 627-713 339-432 (540)
393 4hgt_A Casein kinase I isoform 98.7 1.6E-08 5.4E-13 104.4 8.4 89 623-714 8-98 (296)
394 2ra8_A Uncharacterized protein 98.7 3.5E-09 1.2E-13 112.6 3.3 183 82-287 107-320 (362)
395 2dyl_A Dual specificity mitoge 98.7 1.4E-08 4.7E-13 106.2 7.8 89 623-712 24-115 (318)
396 1j1b_A Glycogen synthase kinas 98.7 1.6E-08 5.5E-13 110.3 8.2 83 625-712 55-144 (420)
397 3a99_A Proto-oncogene serine/t 98.7 3.6E-09 1.2E-13 111.0 2.7 94 622-715 41-144 (320)
398 3sv0_A Casein kinase I-like; t 98.7 3.1E-08 1.1E-12 109.8 9.7 89 623-714 6-96 (483)
399 4e7w_A Glycogen synthase kinas 98.7 1.8E-08 6.1E-13 109.0 7.3 82 624-709 40-127 (394)
400 1q8y_A SR protein kinase; tran 98.6 3.4E-08 1.1E-12 105.7 7.0 88 624-713 19-122 (373)
401 2vx3_A Dual specificity tyrosi 98.6 5.4E-08 1.9E-12 104.7 8.6 91 622-714 52-149 (382)
402 1zar_A RIO2 kinase; serine kin 98.6 6.7E-08 2.3E-12 99.3 8.0 89 617-709 83-189 (282)
403 2eu9_A Dual specificity protei 98.5 1.1E-07 3.9E-12 100.6 8.5 90 623-714 18-115 (355)
404 4azs_A Methyltransferase WBDD; 98.5 5.6E-08 1.9E-12 110.0 5.9 85 632-716 242-338 (569)
405 4h09_A Hypothetical leucine ri 98.5 1.6E-05 5.4E-10 85.1 22.8 264 82-365 46-324 (379)
406 4h09_A Hypothetical leucine ri 98.4 2.3E-05 8E-10 83.8 23.3 268 78-365 65-347 (379)
407 1io0_A Tropomodulin; LRR prote 98.3 1.5E-07 5.1E-12 90.2 0.9 43 101-143 31-78 (185)
408 1io0_A Tropomodulin; LRR prote 98.2 1.6E-07 5.4E-12 89.9 0.6 92 124-215 30-136 (185)
409 3rw6_A Nuclear RNA export fact 98.2 1.2E-07 4E-12 95.8 -2.0 65 151-217 167-235 (267)
410 3rw6_A Nuclear RNA export fact 98.2 4.6E-07 1.6E-11 91.4 2.1 80 127-208 167-257 (267)
411 1zth_A RIO1 serine protein kin 98.0 4.6E-06 1.6E-10 84.2 5.6 84 626-713 49-166 (258)
412 3dzo_A Rhoptry kinase domain; 97.7 2.5E-05 8.4E-10 84.7 5.9 58 622-679 76-137 (413)
413 4gyi_A RIO2 kinase; protein ki 97.7 7.9E-06 2.7E-10 86.6 0.9 85 625-711 96-202 (397)
414 3e4g_A ATP synthase subunit S, 97.6 1.7E-05 5.7E-10 74.3 2.0 34 83-116 62-95 (176)
415 3e4g_A ATP synthase subunit S, 97.6 3.1E-05 1.1E-09 72.4 3.8 34 107-140 62-95 (176)
416 3tm0_A Aminoglycoside 3'-phosp 97.1 0.001 3.5E-08 66.8 8.3 87 624-711 14-101 (263)
417 3d1u_A Putative fructosamine-3 97.1 0.00083 2.8E-08 68.7 7.6 76 628-707 19-97 (288)
418 3rfe_A Platelet glycoprotein I 97.0 0.001 3.4E-08 59.1 6.1 58 325-389 12-72 (130)
419 3rfe_A Platelet glycoprotein I 96.8 0.002 6.8E-08 57.2 6.5 57 277-334 11-68 (130)
420 1nd4_A Aminoglycoside 3'-phosp 96.6 0.0015 5.2E-08 65.2 4.8 80 626-708 22-103 (264)
421 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00087 3E-08 63.8 1.9 41 103-143 38-83 (197)
422 1pgv_A TMD-1, tropomodulin TMD 96.4 0.00081 2.8E-08 64.0 1.2 83 82-164 41-136 (197)
423 2k1k_A Ephrin type-A receptor 94.7 0.036 1.2E-06 36.9 3.9 30 555-584 6-35 (38)
424 3f7w_A Putative fructosamine-3 93.6 0.13 4.5E-06 52.0 7.7 77 626-706 17-96 (288)
425 3dxp_A Putative acyl-COA dehyd 92.7 0.072 2.5E-06 55.9 4.3 78 629-707 43-128 (359)
426 2l2t_A Receptor tyrosine-prote 92.1 0.18 6.2E-06 34.5 4.1 13 560-572 10-22 (44)
427 2ks1_B Epidermal growth factor 92.0 0.21 7.3E-06 34.2 4.4 13 560-572 11-23 (44)
428 2jwa_A Receptor tyrosine-prote 90.7 0.39 1.3E-05 32.8 4.6 28 559-587 11-38 (44)
429 3jr1_A Putative fructosamine-3 90.1 0.76 2.6E-05 47.0 8.6 75 629-707 41-118 (312)
430 4gkh_A Aminoglycoside 3'-phosp 89.1 1.2 4E-05 44.1 9.0 79 631-712 31-112 (272)
431 2olc_A MTR kinase, methylthior 88.4 0.52 1.8E-05 50.0 6.0 74 630-705 36-120 (397)
432 3cxl_A N-chimerin; SH2, RHO-GA 86.0 0.1 3.5E-06 56.8 -1.2 60 629-691 147-215 (463)
433 3r70_A Aminoglycoside phosphot 85.3 1.2 4E-05 45.7 6.5 74 625-708 38-115 (320)
434 3ovc_A Hygromycin-B 4-O-kinase 84.0 2.5 8.7E-05 44.0 8.5 74 629-708 46-122 (362)
435 3tdw_A Gentamicin resistance p 81.8 2.7 9.3E-05 42.6 7.5 74 630-709 25-102 (306)
436 3ats_A Putative uncharacterize 77.6 0.81 2.8E-05 47.6 1.9 79 630-708 26-121 (357)
437 2q83_A YTAA protein; 2635576, 67.8 6.6 0.00023 39.9 6.1 72 631-707 39-118 (346)
438 2l2t_A Receptor tyrosine-prote 67.5 6.8 0.00023 26.7 3.9 22 560-581 7-28 (44)
439 3sg8_A APH(2'')-ID; antibiotic 66.0 3.1 0.0001 42.0 3.0 75 629-709 25-105 (304)
440 2k9y_A Ephrin type-A receptor 64.2 4.1 0.00014 27.3 2.4 9 566-574 16-24 (41)
441 2ks1_B Epidermal growth factor 64.0 5.5 0.00019 27.3 2.9 21 560-580 8-28 (44)
442 2l34_A TYRO protein tyrosine k 60.7 8.9 0.00031 24.4 3.2 23 558-580 5-27 (33)
443 1zyl_A Hypothetical protein YI 55.1 26 0.0009 35.2 7.9 74 631-706 33-113 (328)
444 2klu_A T-cell surface glycopro 50.8 14 0.00048 27.3 3.3 18 565-582 12-29 (70)
445 1iij_A ERBB-2 receptor protein 45.7 7.1 0.00024 25.2 1.0 7 562-568 10-16 (35)
446 2pyw_A Uncharacterized protein 45.0 27 0.00093 36.8 6.2 72 630-704 40-122 (420)
447 1afo_A Glycophorin A; integral 43.5 53 0.0018 21.5 4.7 21 560-580 10-30 (40)
448 1nw1_A Choline kinase (49.2 KD 42.4 28 0.00094 37.0 5.7 71 630-706 79-158 (429)
449 2knc_B Integrin beta-3; transm 41.8 28 0.00096 27.1 4.1 9 564-572 12-20 (79)
450 2k1k_A Ephrin type-A receptor 41.4 48 0.0017 21.8 4.5 28 558-585 5-32 (38)
451 2ppq_A HSK, HK, homoserine kin 37.6 48 0.0016 33.1 6.5 74 630-706 28-109 (322)
452 3csv_A Aminoglycoside phosphot 34.6 83 0.0028 31.5 7.8 78 631-713 25-105 (333)
453 2jwa_A Receptor tyrosine-prote 33.1 55 0.0019 22.3 3.8 31 561-591 9-39 (44)
454 2lz0_A Uncharacterized protein 32.8 79 0.0027 25.7 5.8 14 124-137 14-27 (100)
455 3feg_A Choline/ethanolamine ki 29.6 52 0.0018 34.2 5.1 73 630-707 56-137 (379)
456 2lz0_A Uncharacterized protein 25.9 1.3E+02 0.0046 24.2 6.0 40 99-139 13-52 (100)
457 3i1a_A Spectinomycin phosphotr 24.3 1.5E+02 0.0051 29.9 7.5 68 633-707 32-108 (339)
458 3c5i_A Choline kinase; choline 20.5 68 0.0023 32.8 4.0 72 630-706 39-120 (369)
459 2knc_A Integrin alpha-IIB; tra 20.1 1.4E+02 0.0049 21.2 4.2 13 569-581 19-31 (54)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.7e-42 Score=404.69 Aligned_cols=339 Identities=26% Similarity=0.397 Sum_probs=296.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCC-CCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccc---cC------
Q 004822 30 SITDPIEVSALRSIKKSLVDDYSKLSNWNRG-DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGN---LS------ 99 (728)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~-~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~---~~------ 99 (728)
..+.++|++||++||+.+.|+. .+.+|... |+| .|.||+|+. .+|+.|+|+++.+.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C--~w~gv~C~~-------~~v~~L~L~~~~l~g~~~~l~~~l~~L 76 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPC--TFDGVTCRD-------DKVTSIDLSSKPLNVGFSAVSSSLLSL 76 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGG--GSTTEEEET-------TEEEEEECTTSCCCEEHHHHHHHTTTC
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCc--CCcceEECC-------CcEEEEECCCCCcCCccCccChhHhcc
Confidence 3345789999999999999887 89999755 566 799999961 5899999999888876 33
Q ss_pred -----------------ccccCCCCCCEEEccCCCCccCCCc--cccCCCCCcEEeccCCcCCCcCCccC-CCCCCCCEE
Q 004822 100 -----------------PEIGRLSYLTILDFMWNKISGSIPK--EIGNIKSLELLLLNGNELTGSLPEEL-GYLPKLDRI 159 (728)
Q Consensus 100 -----------------~~~~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L 159 (728)
+.|+++++|++|||++|.+.+.+|. .++++++|++|+|++|.+++..|..+ .++++|++|
T Consensus 77 ~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 156 (768)
T 3rgz_A 77 TGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156 (768)
T ss_dssp TTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEE
T ss_pred CcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEE
Confidence 5678889999999999999988888 89999999999999999998888776 889999999
Q ss_pred EeeccCCCCCCcHh---hhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccc
Q 004822 160 QIDQNYISGSLPKS---FANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNN 236 (728)
Q Consensus 160 ~L~~N~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 236 (728)
+|++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|++++.+|. ++.+++|++|++++|
T Consensus 157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 99999999888877 78899999999999999876653 7899999999999999988887 999999999999999
Q ss_pred cCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccCCCCCCcCc
Q 004822 237 NFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIP 314 (728)
Q Consensus 237 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~N~l~~~~p 314 (728)
.+++ .+|..+.++++|++|++++|.+++..|.. .+++|++|++++|++++.+|..... ++|+.|++++|++++.+|
T Consensus 234 ~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 234 KLSG-DFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp CCCS-CHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred cCCC-cccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 9997 78999999999999999999999888865 8899999999999999999987654 789999999999999999
Q ss_pred hhccCCccCceeecccccCcccCCcc-hhhhccCCCCCCcEEECcCCcCCCcCC-CC-CCC-CceEEEcCCCcCCCCC
Q 004822 315 SNFSGLPRLQRLFIANNSLSGSIPSS-IWQSRTLNATETFILDFQNNNLTNISG-SF-NIP-PNVTVRLRGNPFCLNT 388 (728)
Q Consensus 315 ~~~~~l~~L~~L~L~~N~l~~~ip~~-~~~~~~l~~~~L~~L~l~~N~l~~~~~-~~-~~~-~l~~l~l~~N~~~~~~ 388 (728)
..|..+++|+.|++++|+++|.+|.. +. .+++|++|++++|++++..+ .+ .++ +++.|++++|++.+..
T Consensus 312 ~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-----~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 312 PFFGSCSLLESLALSSNNFSGELPMDTLL-----KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEEEECCHHHHT-----TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred hHHhcCCCccEEECCCCcccCcCCHHHHh-----cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 99999999999999999999999987 65 78899999999999986543 33 244 7889999999887655
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3e-41 Score=356.54 Aligned_cols=295 Identities=30% Similarity=0.498 Sum_probs=235.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCC-CCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCcc--ccCccccCCCC
Q 004822 31 ITDPIEVSALRSIKKSLVDDYSKLSNWNRG-DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSG--NLSPEIGRLSY 107 (728)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~l~~w~~~-~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~--~~~~~~~~l~~ 107 (728)
.|.++|++||++||+.+.++. .+.+|... ++|.+.|.||.|.... ...+|+.|+++++++++ .+|+.|+++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~---~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDT---QTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSS---SCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCC---CCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 367889999999999998775 68899765 6775569999996432 12589999999999998 89999999999
Q ss_pred CCEEEccC-CCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEcc
Q 004822 108 LTILDFMW-NKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (728)
Q Consensus 108 L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 186 (728)
|++|+|++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|.+++.+|..|.++++|++|+++
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 99999995 99999999999999999999999999998999999999999999999999998899999999999999999
Q ss_pred CcccccccccccCCCC-CCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCcc
Q 004822 187 NNSISGQIPPELSRLP-SLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 187 ~N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 265 (728)
+|.+++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|.+++ ..|..+..+++|+.|++++|++++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-DASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-CCGGGCCTTSCCSEEECCSSEECC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-cCCHHHhcCCCCCEEECCCCceee
Confidence 9999888888888887 899999999999888888888887 8888888888886 677778888888888888888776
Q ss_pred CCCCCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeeccccc
Q 004822 266 PMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNS 332 (728)
Q Consensus 266 ~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 332 (728)
..+.+..+++|++|++++|++++.+|..+.. ++|+.|+|++|+++|.+|.. ..+++|+.|++++|+
T Consensus 236 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp BGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 6666666666666666666666555543222 44555555555555444443 444555555555554
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.5e-40 Score=381.87 Aligned_cols=337 Identities=21% Similarity=0.290 Sum_probs=294.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCC--------CCCCCCCCC-CCCCCCc---ceEEcCCCCCCCCCcceeEEECCCCCCcccc
Q 004822 31 ITDPIEVSALRSIKKSLVDDY--------SKLSNWNRG-DPCTSNW---TGVLCFNTTMDDGYLHLRELQLLNLNLSGNL 98 (728)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~--------~~l~~w~~~-~~C~~~w---~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~ 98 (728)
.....|+.||.++++++..+. +...+|+.. ++| .| .||+|+.. .+|+.|+|++++++|.+
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c--~w~~~~GV~C~~~------~~V~~L~L~~~~l~g~l 97 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELD--MWGAQPGVSLNSN------GRVTGLSLEGFGASGRV 97 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGG--GTTCCTTEEECTT------CCEEEEECTTSCCEEEE
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcc--cccCCCCeEEcCC------CCEEEEEecCcccCCcC
Confidence 344578999999999986542 223479765 455 69 99999643 58999999999999999
Q ss_pred CccccCCCCCCEEEccCCC-------------------------------------------------------------
Q 004822 99 SPEIGRLSYLTILDFMWNK------------------------------------------------------------- 117 (728)
Q Consensus 99 ~~~~~~l~~L~~L~Ls~n~------------------------------------------------------------- 117 (728)
|+.++++++|++|+|++|.
T Consensus 98 p~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~ 177 (636)
T 4eco_A 98 PDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177 (636)
T ss_dssp CGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC
T ss_pred ChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccc
Confidence 9999999999999999884
Q ss_pred -----------------CccCCCccccCCCCCcEEeccCCcCCCc-----------------CCccCC--CCCCCCEEEe
Q 004822 118 -----------------ISGSIPKEIGNIKSLELLLLNGNELTGS-----------------LPEELG--YLPKLDRIQI 161 (728)
Q Consensus 118 -----------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~L~~L~L 161 (728)
+++ +|..|+++++|++|+|++|.+++. +|+.++ ++++|++|+|
T Consensus 178 ~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L 256 (636)
T 4eco_A 178 SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256 (636)
T ss_dssp CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEe
Confidence 345 788899999999999999999986 999999 9999999999
Q ss_pred eccCCCCCCcHhhhccCCCCEEEccCcc-ccc-ccccccCCC------CCCcEEECcCCCCCCCCCc--CCCCCCCCcEE
Q 004822 162 DQNYISGSLPKSFANLNKTRHFHMNNNS-ISG-QIPPELSRL------PSLVHMLLDNNNLTGYLPP--ELSELPKLLIL 231 (728)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~~~--~l~~l~~L~~L 231 (728)
++|.+.+.+|..|.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|+++ .+|. .++.+++|++|
T Consensus 257 ~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L 335 (636)
T 4eco_A 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGML 335 (636)
T ss_dssp ECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEE
T ss_pred cCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEE
Confidence 9999999999999999999999999998 988 889888776 99999999999999 7888 89999999999
Q ss_pred EcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCC-cCEEEccCCCCcccCCCCCcc---CCccEEEccCC
Q 004822 232 QLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPN-LGYLDLSSNQLNGSIPPGRLS---LNITTIKLSNN 307 (728)
Q Consensus 232 ~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~-L~~L~Ls~N~l~~~ip~~~~~---~~L~~L~Ls~N 307 (728)
++++|.++| .+| .+..+++|+.|++++|+++..+..+..+++ |++|++++|.++ .+|..+.. .+|+.|++++|
T Consensus 336 ~L~~N~l~g-~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 336 ECLYNQLEG-KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp ECCSCCCEE-ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSS
T ss_pred eCcCCcCcc-chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCC
Confidence 999999997 788 899999999999999999955558888999 999999999999 78876444 37999999999
Q ss_pred CCCCcCchhcc-------CCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCCC--CC------
Q 004822 308 KLTGTIPSNFS-------GLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFN--IP------ 372 (728)
Q Consensus 308 ~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~--~~------ 372 (728)
++++.+|..|. .+++|+.|++++|+++ .+|..++. .+++|+.|++++|+++.++.... ..
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~----~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFS----TGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHH----TTCCCSEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHc----cCCCCCEEECCCCCCCCcCHHHhcccccccccc
Confidence 99999999888 8889999999999999 77877653 57899999999999998776542 22
Q ss_pred -CceEEEcCCCcCC
Q 004822 373 -PNVTVRLRGNPFC 385 (728)
Q Consensus 373 -~l~~l~l~~N~~~ 385 (728)
+++.|++++|.+.
T Consensus 488 ~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 488 YLLTSIDLRFNKLT 501 (636)
T ss_dssp GGCCEEECCSSCCC
T ss_pred CCccEEECcCCcCC
Confidence 7889999999987
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.3e-39 Score=384.11 Aligned_cols=335 Identities=21% Similarity=0.289 Sum_probs=284.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCC------CCCCCCCc------------ceEEcCCCCCCCCCcceeEEECCC
Q 004822 30 SITDPIEVSALRSIKKSLVDDYSKLSNWNR------GDPCTSNW------------TGVLCFNTTMDDGYLHLRELQLLN 91 (728)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~l~~w~~------~~~C~~~w------------~gv~C~~~~~~~~~~~l~~L~l~~ 91 (728)
+.+...|++||++||+++.++ +|+. .+||.|.| .||.|+.. .+|+.|+|++
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~------~~V~~L~Ls~ 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN------GRVTGLSLAG 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT------SCEEEEECTT
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC------CCEEEEECcc
Confidence 344567899999999999775 6753 35755589 99999652 5899999999
Q ss_pred CCCccccCccccCCCCCCEEEc-cCCCCccC-------------------------------------------------
Q 004822 92 LNLSGNLSPEIGRLSYLTILDF-MWNKISGS------------------------------------------------- 121 (728)
Q Consensus 92 ~~l~~~~~~~~~~l~~L~~L~L-s~n~l~~~------------------------------------------------- 121 (728)
+++.|.+|+.|++|++|++|+| ++|.+.|.
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 9999999999999999999999 77755443
Q ss_pred ---------------------------CCccccCCCCCcEEeccCCcCCC-----------------cCCccCC--CCCC
Q 004822 122 ---------------------------IPKEIGNIKSLELLLLNGNELTG-----------------SLPEELG--YLPK 155 (728)
Q Consensus 122 ---------------------------~p~~~~~l~~L~~L~L~~N~l~~-----------------~~p~~~~--~l~~ 155 (728)
+|..|+++++|++|+|++|.+++ .+|+.++ ++++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 78889999999999999999998 3899988 9999
Q ss_pred CCEEEeeccCCCCCCcHhhhccCCCCEEEccCcc-ccc-ccccccCCCC-------CCcEEECcCCCCCCCCCc--CCCC
Q 004822 156 LDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS-ISG-QIPPELSRLP-------SLVHMLLDNNNLTGYLPP--ELSE 224 (728)
Q Consensus 156 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~~~--~l~~ 224 (728)
|++|+|++|.+.+.+|..|.++++|++|+|++|+ +++ .+|..++.++ +|++|++++|+++ .+|. .++.
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~ 571 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK 571 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc
Confidence 9999999999999999999999999999999998 888 7887666554 9999999999999 7888 8999
Q ss_pred CCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCC-cCEEEccCCCCcccCCCCCcc---CCcc
Q 004822 225 LPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPN-LGYLDLSSNQLNGSIPPGRLS---LNIT 300 (728)
Q Consensus 225 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~-L~~L~Ls~N~l~~~ip~~~~~---~~L~ 300 (728)
+++|+.|+|++|+++ .+| .+..+++|+.|+|++|+++..+..+..+++ |+.|+|++|.++ .+|..+.. .+|+
T Consensus 572 L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647 (876)
T ss_dssp CTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEE
T ss_pred CCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCC
Confidence 999999999999997 677 899999999999999999954447888998 999999999998 78865443 3499
Q ss_pred EEEccCCCCCCcCchhc---c--CCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCCC-C---
Q 004822 301 TIKLSNNKLTGTIPSNF---S--GLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFN-I--- 371 (728)
Q Consensus 301 ~L~Ls~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~-~--- 371 (728)
.|+|++|++++.+|... . .+++|+.|+|++|+++ .+|..++. .+++|+.|+|++|+++.++.... .
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~----~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA----TGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH----TTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc----cCCCCCEEECCCCcCCccChHHhccccc
Confidence 99999999988766422 2 3458999999999998 77877653 57889999999999998776442 1
Q ss_pred -----CCceEEEcCCCcCC
Q 004822 372 -----PPNVTVRLRGNPFC 385 (728)
Q Consensus 372 -----~~l~~l~l~~N~~~ 385 (728)
++++.|+|++|++.
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLT 741 (876)
T ss_dssp CCTTGGGCCEEECCSSCCC
T ss_pred cccccCCccEEECCCCCCc
Confidence 17888999999887
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.5e-38 Score=374.67 Aligned_cols=302 Identities=31% Similarity=0.509 Sum_probs=176.1
Q ss_pred CcceeEEECCCCCCccccCcc-ccCCCCCCEEEccCCCCccCCCccccCCC-CCcEEeccCCcCCC--------------
Q 004822 81 YLHLRELQLLNLNLSGNLSPE-IGRLSYLTILDFMWNKISGSIPKEIGNIK-SLELLLLNGNELTG-------------- 144 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~-------------- 144 (728)
+.+|+.|++++|.+.+.+|.. ++++++|++|++++|++.+.+|..+.+++ +|++|++++|.+++
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 456788888888887777765 77777777777777777777776666554 55555555555544
Q ss_pred ------------cCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCC
Q 004822 145 ------------SLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNN 212 (728)
Q Consensus 145 ------------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 212 (728)
.+|..+.++++|++|+|++|.+++.+|..|.++++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 44555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCC
Q 004822 213 NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIP 291 (728)
Q Consensus 213 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip 291 (728)
++++.+|..+..+++|++|++++|++++ .+|.+++.+++|++|++++|++++..| .+..+++|+.|++++|+++|.+|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCC-cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 5555555555555555555555555554 455555555555555555555555554 45555556666666555555555
Q ss_pred CCCcc-----------------------------------------------------------------------CCcc
Q 004822 292 PGRLS-----------------------------------------------------------------------LNIT 300 (728)
Q Consensus 292 ~~~~~-----------------------------------------------------------------------~~L~ 300 (728)
...+. .+|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 32110 2355
Q ss_pred EEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCC-C-CCCCceEEE
Q 004822 301 TIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVR 378 (728)
Q Consensus 301 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~-~-~~~~l~~l~ 378 (728)
.|||++|+++|.+|..++.+++|+.|+|++|+++|.+|..+. .+++|+.|||++|+++|.+|. + .++.++.|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~-----~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ 710 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG-----DLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-----GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh-----CCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 556666666555555555566666666666666655665555 455555666666666554332 2 345555556
Q ss_pred cCCCcCCCCC
Q 004822 379 LRGNPFCLNT 388 (728)
Q Consensus 379 l~~N~~~~~~ 388 (728)
+++|+++|.+
T Consensus 711 ls~N~l~g~i 720 (768)
T 3rgz_A 711 LSNNNLSGPI 720 (768)
T ss_dssp CCSSEEEEEC
T ss_pred CcCCcccccC
Confidence 6666555544
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2e-37 Score=345.02 Aligned_cols=323 Identities=17% Similarity=0.221 Sum_probs=270.8
Q ss_pred CCCCCCcceEEcCCCC---CCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCC-CccccCCCCCcEEe
Q 004822 61 DPCTSNWTGVLCFNTT---MDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSI-PKEIGNIKSLELLL 136 (728)
Q Consensus 61 ~~C~~~w~gv~C~~~~---~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~ 136 (728)
..|.+.+..+.|.+.. ++.-..+++.|++++|.+++..|..|+++++|++|+|++|.+.+.+ |..|.++++|++|+
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~ 85 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILK 85 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEe
Confidence 4565445558897653 3333468999999999999988999999999999999999997555 66799999999999
Q ss_pred ccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHh--hhccCCCCEEEccCcccccccccc-cCCCCCCcEEECcCCC
Q 004822 137 LNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKS--FANLNKTRHFHMNNNSISGQIPPE-LSRLPSLVHMLLDNNN 213 (728)
Q Consensus 137 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~ 213 (728)
|++|.+++..|..|.++++|++|+|++|.+++..+.. |.++++|++|+|++|.+.+..|.. +..+++|++|++++|+
T Consensus 86 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 86 LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence 9999999999999999999999999999999866665 999999999999999999887876 8899999999999999
Q ss_pred CCCCCCcCCCCC----------------------------------CCCcEEEcccccCCCCCCccccc-----------
Q 004822 214 LTGYLPPELSEL----------------------------------PKLLILQLDNNNFEGTTIPASYS----------- 248 (728)
Q Consensus 214 l~~~~~~~l~~l----------------------------------~~L~~L~L~~N~l~~~~~p~~~~----------- 248 (728)
+++..+..+..+ ++|++|++++|++++ ..|..+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L 244 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSL 244 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-cchhhhhccccccceeeE
Confidence 998888776554 568888888887754 3332221
Q ss_pred ----------------------------CCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CC
Q 004822 249 ----------------------------NMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LN 298 (728)
Q Consensus 249 ----------------------------~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~ 298 (728)
..++|+.|++++|++++..| .+..+++|++|++++|++++..|..+.. ++
T Consensus 245 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 324 (455)
T 3v47_A 245 ILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTH 324 (455)
T ss_dssp ECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred eeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCccc
Confidence 12578888888888888777 6888999999999999998666655433 78
Q ss_pred ccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCC--CCCCceE
Q 004822 299 ITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVT 376 (728)
Q Consensus 299 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~--~~~~l~~ 376 (728)
|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+. .+++|++|++++|+++++++.. .+++++.
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 399 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL-----GLPNLKELALDTNQLKSVPDGIFDRLTSLQK 399 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTT-----TCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcc-----ccccccEEECCCCccccCCHhHhccCCcccE
Confidence 99999999999988888999999999999999999988888887 7889999999999999988643 5788999
Q ss_pred EEcCCCcCCCCCC
Q 004822 377 VRLRGNPFCLNTN 389 (728)
Q Consensus 377 l~l~~N~~~~~~~ 389 (728)
|++++|++.|+++
T Consensus 400 L~l~~N~l~~~~~ 412 (455)
T 3v47_A 400 IWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCBCCCTT
T ss_pred EEccCCCcccCCC
Confidence 9999999988874
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=337.61 Aligned_cols=322 Identities=22% Similarity=0.243 Sum_probs=287.2
Q ss_pred CCCCC--CcceEEcCCCCC---CC-CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcE
Q 004822 61 DPCTS--NWTGVLCFNTTM---DD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (728)
Q Consensus 61 ~~C~~--~w~gv~C~~~~~---~~-~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 134 (728)
..|.| .|..|.|.+..+ +. -..+++.|++++|++++..+..|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus 5 ~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 84 (477)
T 2id5_A 5 PRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84 (477)
T ss_dssp TTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCE
Confidence 34554 578999976542 22 2357999999999999988999999999999999999999999999999999999
Q ss_pred EeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCC
Q 004822 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNL 214 (728)
Q Consensus 135 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 214 (728)
|+|++|+++...+..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+.+..+..|..+++|++|++++|++
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 99999999977777899999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCC
Q 004822 215 TGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPG 293 (728)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~ 293 (728)
++..+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.+.+..+ ......+|+.|++++|+++ .+|..
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~ 242 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYL 242 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHH
T ss_pred cccChhHhcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHH
Confidence 98777789999999999999999986 566789999999999999998776655 5555679999999999998 56643
Q ss_pred Ccc--CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCC--
Q 004822 294 RLS--LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-- 369 (728)
Q Consensus 294 ~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~-- 369 (728)
.+. ++|+.|+|++|++++..+..|..+++|+.|+|++|++++..|..+. .+++|+.|++++|+++++++..
T Consensus 243 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~ 317 (477)
T 2id5_A 243 AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR-----GLNYLRVLNVSGNQLTTLEESVFH 317 (477)
T ss_dssp HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBT-----TCTTCCEEECCSSCCSCCCGGGBS
T ss_pred HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhc-----CcccCCEEECCCCcCceeCHhHcC
Confidence 333 7999999999999998888999999999999999999998888887 7899999999999999988643
Q ss_pred CCCCceEEEcCCCcCCCCCC
Q 004822 370 NIPPNVTVRLRGNPFCLNTN 389 (728)
Q Consensus 370 ~~~~l~~l~l~~N~~~~~~~ 389 (728)
.+++++.|++++|+|.|++.
T Consensus 318 ~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 318 SVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CGGGCCEEECCSSCEECSGG
T ss_pred CCcccCEEEccCCCccCccc
Confidence 47889999999999998874
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9e-35 Score=336.54 Aligned_cols=287 Identities=24% Similarity=0.297 Sum_probs=255.2
Q ss_pred CccccCccccCCCCCCEEEccCCCCccC-----------------CCcccc--CCCCCcEEeccCCcCCCcCCccCCCCC
Q 004822 94 LSGNLSPEIGRLSYLTILDFMWNKISGS-----------------IPKEIG--NIKSLELLLLNGNELTGSLPEELGYLP 154 (728)
Q Consensus 94 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~ 154 (728)
+++ +|+.|+++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|+.|++++
T Consensus 195 l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 273 (636)
T 4eco_A 195 ITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273 (636)
T ss_dssp EEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCS
T ss_pred Ccc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCC
Confidence 345 788999999999999999999986 999999 999999999999999999999999999
Q ss_pred CCCEEEeeccC-CCC-CCcHhhhcc------CCCCEEEccCccccccccc--ccCCCCCCcEEECcCCCCCCCCCcCCCC
Q 004822 155 KLDRIQIDQNY-ISG-SLPKSFANL------NKTRHFHMNNNSISGQIPP--ELSRLPSLVHMLLDNNNLTGYLPPELSE 224 (728)
Q Consensus 155 ~L~~L~L~~N~-l~~-~~p~~~~~l------~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 224 (728)
+|++|+|++|+ +++ .+|..++++ ++|++|++++|.++ .+|. .++.+++|++|++++|+++|.+| .+..
T Consensus 274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 99999999998 998 899999887 99999999999999 7888 89999999999999999998899 8999
Q ss_pred CCCCcEEEcccccCCCCCCcccccCCCC-CcEEEccCCcCccCCCCCCCCC--CcCEEEccCCCCcccCCCCCc------
Q 004822 225 LPKLLILQLDNNNFEGTTIPASYSNMSK-LLKLSLRNCSLQGPMPDLSRIP--NLGYLDLSSNQLNGSIPPGRL------ 295 (728)
Q Consensus 225 l~~L~~L~L~~N~l~~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~l~~l~--~L~~L~Ls~N~l~~~ip~~~~------ 295 (728)
+++|++|++++|+++ .+|..+..+++ |++|++++|+++..+..+..++ +|+.|++++|.+++.+|..+.
T Consensus 352 l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 352 EIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp EEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred CCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 999999999999998 68889999999 9999999999995544565544 899999999999988887654
Q ss_pred -c-CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhcc---CCCCCCcEEECcCCcCCCcCCCC-
Q 004822 296 -S-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT---LNATETFILDFQNNNLTNISGSF- 369 (728)
Q Consensus 296 -~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~---l~~~~L~~L~l~~N~l~~~~~~~- 369 (728)
. .+|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+|...+.... -++++|+.|++++|+++.++..+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 508 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR 508 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh
Confidence 2 58999999999999666666778999999999999999 88877653210 01238999999999999888654
Q ss_pred --CCCCceEEEcCCCcCCC
Q 004822 370 --NIPPNVTVRLRGNPFCL 386 (728)
Q Consensus 370 --~~~~l~~l~l~~N~~~~ 386 (728)
.+++++.|++++|++.+
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS
T ss_pred hccCCCcCEEECCCCCCCC
Confidence 68899999999999986
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.8e-33 Score=324.80 Aligned_cols=319 Identities=19% Similarity=0.181 Sum_probs=255.9
Q ss_pred CCCCC--CcceEEcCCCCC---CCC-CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcE
Q 004822 61 DPCTS--NWTGVLCFNTTM---DDG-YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (728)
Q Consensus 61 ~~C~~--~w~gv~C~~~~~---~~~-~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 134 (728)
..|.| .+..+.|.+..+ |.. ..+++.|++++|.+++..|..|+++++|++|+|++|++.+..|..|.++++|++
T Consensus 6 ~~C~~~~~~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 85 (606)
T 3t6q_A 6 QKCIEKEVNKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDT 85 (606)
T ss_dssp CCCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CceecccCCceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCe
Confidence 34544 356688976432 222 347999999999999988999999999999999999999999999999999999
Q ss_pred EeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCC
Q 004822 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNL 214 (728)
Q Consensus 135 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 214 (728)
|+|++|.+++..|..|+++++|++|++++|.+++..+..|.++++|++|++++|.+.+.....+..+++|++|++++|++
T Consensus 86 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 86 LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp EECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred eeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 99999999999999999999999999999999988788899999999999999999875544555699999999999999
Q ss_pred CCCCCcCCCCCCCCc--EEEcccccCCCCCCcccccCC------------------------------------------
Q 004822 215 TGYLPPELSELPKLL--ILQLDNNNFEGTTIPASYSNM------------------------------------------ 250 (728)
Q Consensus 215 ~~~~~~~l~~l~~L~--~L~L~~N~l~~~~~p~~~~~l------------------------------------------ 250 (728)
++..+..+..+++|+ .|++++|.+++ ..|..+...
T Consensus 166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~ 244 (606)
T 3t6q_A 166 HYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244 (606)
T ss_dssp CEECHHHHHTTTTCCSEEEECTTCCCCE-ECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCC
T ss_pred cccChhhhhhhcccceeEEecCCCccCc-cChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccC
Confidence 988888888888888 88999998875 333332211
Q ss_pred ---------CCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccC
Q 004822 251 ---------SKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSG 319 (728)
Q Consensus 251 ---------~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~ 319 (728)
.+|+.|++++|.+++..+ .+..+++|++|++++|+++ .+|..+.. ++|++|++++|++++..|..+..
T Consensus 245 ~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred hhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhc
Confidence 157778888888877766 4778888888888888887 67765444 78888888888888777778888
Q ss_pred CccCceeecccccCcccCCcc-hhhhccCCCCCCcEEECcCCcCCCcC---CCC-CCCCceEEEcCCCcCCC
Q 004822 320 LPRLQRLFIANNSLSGSIPSS-IWQSRTLNATETFILDFQNNNLTNIS---GSF-NIPPNVTVRLRGNPFCL 386 (728)
Q Consensus 320 l~~L~~L~L~~N~l~~~ip~~-~~~~~~l~~~~L~~L~l~~N~l~~~~---~~~-~~~~l~~l~l~~N~~~~ 386 (728)
+++|+.|++++|.+++.+|.. +. .+++|+.|++++|+++++. ..+ .+++++.|++++|++..
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 390 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLE-----NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTT-----TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred cCcCCEEECCCCCcccccchhhhh-----ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence 888888888888888777765 44 6677888888888887764 222 46777777777777643
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.7e-34 Score=326.94 Aligned_cols=136 Identities=18% Similarity=0.212 Sum_probs=74.6
Q ss_pred ccccCCCCCcEEEccCCcCccCCC--CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCC-cCchhccCC
Q 004822 245 ASYSNMSKLLKLSLRNCSLQGPMP--DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTG-TIPSNFSGL 320 (728)
Q Consensus 245 ~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~-~~p~~~~~l 320 (728)
..+..+++|+.|++++|++.+..+ .+..+++|++|++++|.+++..|..+.. ++|+.|++++|++++ .+|..|..+
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 345556667777777777666554 4566666666666666666545443222 455555555555554 245555555
Q ss_pred ccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCC-CC-CCCCceEEEcCCCcCC
Q 004822 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG-SF-NIPPNVTVRLRGNPFC 385 (728)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~-~~-~~~~l~~l~l~~N~~~ 385 (728)
++|+.|++++|++++..|..+. .+++|+.|++++|+++++++ .+ .+++++.|++++|++.
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFD-----TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTT-----TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCEEECCCCcCCccChhhhc-----ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 5555555555555555555444 44555555555555555432 22 2444555555555543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-33 Score=325.35 Aligned_cols=300 Identities=20% Similarity=0.262 Sum_probs=272.3
Q ss_pred ceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEee
Q 004822 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (728)
Q Consensus 83 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 162 (728)
+++.|++++|.+++..+..|+.+++|++|++++|+++ .+|..+.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999888888999999999999999999 789899999999999999999998889999999999999999
Q ss_pred ccCCCCCCcH-hhhccCCCCEEEccCccccccc--ccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCC
Q 004822 163 QNYISGSLPK-SFANLNKTRHFHMNNNSISGQI--PPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (728)
Q Consensus 163 ~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 239 (728)
+|.+.+.+|. .+.++++|++|++++|.+.+.. +..+..+++|++|++++|++++..|..+..+++|+.|++++|.++
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 9999866654 5899999999999999998776 778999999999999999999999999999999999999999998
Q ss_pred CCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCccc-CCC-CCcc--CCccEEEccCCCCCCcCc
Q 004822 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGS-IPP-GRLS--LNITTIKLSNNKLTGTIP 314 (728)
Q Consensus 240 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~-ip~-~~~~--~~L~~L~Ls~N~l~~~~p 314 (728)
+...+..+..+++|+.|++++|.+++..+ .+..+++|++|++++|++++. +|. ..+. ++|+.|++++|++++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 73344568999999999999999998877 688999999999999999863 232 1222 799999999999999999
Q ss_pred hhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCC--CCCCceEEEcCCCcCCCCCC
Q 004822 315 SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (728)
Q Consensus 315 ~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~--~~~~l~~l~l~~N~~~~~~~ 389 (728)
..|..+++|+.|+|++|++++..|..+. .++.| .|++++|+++++++.. .+++++.+++++|+|.|+++
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~-----~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALS-----HLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGT-----TCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred hhhccccCCCEEECCCCccCcCChhHhC-----ccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 9999999999999999999999999888 78889 9999999999987653 46889999999999999874
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-33 Score=331.45 Aligned_cols=283 Identities=24% Similarity=0.310 Sum_probs=248.7
Q ss_pred cCccccCCCCCCEEEccCCCCcc-----------------CCCcccc--CCCCCcEEeccCCcCCCcCCccCCCCCCCCE
Q 004822 98 LSPEIGRLSYLTILDFMWNKISG-----------------SIPKEIG--NIKSLELLLLNGNELTGSLPEELGYLPKLDR 158 (728)
Q Consensus 98 ~~~~~~~l~~L~~L~Ls~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 158 (728)
+|+.|+++++|++|+|++|++++ .+|..++ ++++|++|+|++|.+.+.+|..|+++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78899999999999999999998 3899988 9999999999999999999999999999999
Q ss_pred EEeeccC-CCC-CCcHhhhccC-------CCCEEEccCccccccccc--ccCCCCCCcEEECcCCCCCCCCCcCCCCCCC
Q 004822 159 IQIDQNY-ISG-SLPKSFANLN-------KTRHFHMNNNSISGQIPP--ELSRLPSLVHMLLDNNNLTGYLPPELSELPK 227 (728)
Q Consensus 159 L~L~~N~-l~~-~~p~~~~~l~-------~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 227 (728)
|+|++|+ +++ .+|..+.+++ +|++|+|++|.+. .+|. .++.+++|++|+|++|+++ .+| .|..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCc
Confidence 9999998 998 8999888777 9999999999999 7888 8999999999999999999 788 8999999
Q ss_pred CcEEEcccccCCCCCCcccccCCCC-CcEEEccCCcCccCCCCCCCCC--CcCEEEccCCCCcccCCCCC------ccCC
Q 004822 228 LLILQLDNNNFEGTTIPASYSNMSK-LLKLSLRNCSLQGPMPDLSRIP--NLGYLDLSSNQLNGSIPPGR------LSLN 298 (728)
Q Consensus 228 L~~L~L~~N~l~~~~~p~~~~~l~~-L~~L~L~~n~l~~~~~~l~~l~--~L~~L~Ls~N~l~~~ip~~~------~~~~ 298 (728)
|+.|++++|+++ .+|..+..+++ |+.|+|++|+++..+..+..++ +|+.|++++|++.+.+|... ...+
T Consensus 597 L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 999999999998 68988999999 9999999999995544566554 49999999999998776432 1158
Q ss_pred ccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhcc---CCCCCCcEEECcCCcCCCcCCCC---CCC
Q 004822 299 ITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT---LNATETFILDFQNNNLTNISGSF---NIP 372 (728)
Q Consensus 299 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~---l~~~~L~~L~l~~N~l~~~~~~~---~~~ 372 (728)
|+.|+|++|+++...+..+..+++|+.|+|++|+|+ .+|..++.... -++++|+.|+|++|+++.++..+ .++
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLP 753 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCC
Confidence 999999999999554455668999999999999999 88887663210 02238999999999999888655 589
Q ss_pred CceEEEcCCCcCCC
Q 004822 373 PNVTVRLRGNPFCL 386 (728)
Q Consensus 373 ~l~~l~l~~N~~~~ 386 (728)
+++.|+|++|++.+
T Consensus 754 ~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS 767 (876)
T ss_dssp TCCEEECCSSCCSS
T ss_pred CcCEEEeCCCCCCc
Confidence 99999999999986
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=319.35 Aligned_cols=158 Identities=23% Similarity=0.343 Sum_probs=96.6
Q ss_pred CCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccC--CC-CCCCCCCcCEEEccCCCCcccCCCCCcc--C
Q 004822 223 SELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP--MP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--L 297 (728)
Q Consensus 223 ~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~ 297 (728)
..+++|++|++++|.+++ ..|..+..+++|++|++++|++++. .| .+..+++|++|++++|++++.+|...+. +
T Consensus 321 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 345556666666666654 4555566666666666666666542 22 3555666666666666666545543222 5
Q ss_pred CccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCC-C-CCCCce
Q 004822 298 NITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNV 375 (728)
Q Consensus 298 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~-~-~~~~l~ 375 (728)
+|+.|++++|++++..|..+. ++|+.|++++|+++ .+|..++ .+++|+.|++++|++++++.. + .+++++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~-----~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVV-----KLEALQELNVASNQLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGG-----GCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhh-----cCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence 666666666666655555443 56666677777666 6666655 566777777777777776654 3 366677
Q ss_pred EEEcCCCcCCCCCC
Q 004822 376 TVRLRGNPFCLNTN 389 (728)
Q Consensus 376 ~l~l~~N~~~~~~~ 389 (728)
.|++++|++.|+|+
T Consensus 472 ~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 472 KIWLHTNPWDCSCP 485 (520)
T ss_dssp EEECCSSCBCCCHH
T ss_pred EEECcCCCCcccCC
Confidence 77777777777653
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.8e-33 Score=318.92 Aligned_cols=296 Identities=21% Similarity=0.243 Sum_probs=198.2
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
.+++.|++++|.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57888888888888777778888888888888888888888888888888888888888888 55655 7888888888
Q ss_pred eccCCCCC-CcHhhhccCCCCEEEccCccccccc-------------------------ccccCCCC-------------
Q 004822 162 DQNYISGS-LPKSFANLNKTRHFHMNNNSISGQI-------------------------PPELSRLP------------- 202 (728)
Q Consensus 162 ~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~-------------------------p~~~~~l~------------- 202 (728)
++|++++. +|..|.++++|++|++++|.+.+.. |..+..+.
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~ 208 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccc
Confidence 88888863 4678888888888888888775321 11111111
Q ss_pred --------------------------------------------------------------------CCcEEECcCCCC
Q 004822 203 --------------------------------------------------------------------SLVHMLLDNNNL 214 (728)
Q Consensus 203 --------------------------------------------------------------------~L~~L~L~~N~l 214 (728)
+|++|++++|++
T Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l 288 (562)
T 3a79_B 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288 (562)
T ss_dssp CCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEE
T ss_pred hhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEe
Confidence 344444555555
Q ss_pred CCCCCcCC-----------------------------------------------------CCCCCCcEEEcccccCCCC
Q 004822 215 TGYLPPEL-----------------------------------------------------SELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 215 ~~~~~~~l-----------------------------------------------------~~l~~L~~L~L~~N~l~~~ 241 (728)
++.+|..+ ..+++|++|++++|.+++
T Consensus 289 ~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~- 367 (562)
T 3a79_B 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD- 367 (562)
T ss_dssp CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT-
T ss_pred eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc-
Confidence 54555443 445566666666666665
Q ss_pred CCcccccCCCCCcEEEccCCcCccCC--C-CCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccCCCCCCcCchh
Q 004822 242 TIPASYSNMSKLLKLSLRNCSLQGPM--P-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPSN 316 (728)
Q Consensus 242 ~~p~~~~~l~~L~~L~L~~n~l~~~~--~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~N~l~~~~p~~ 316 (728)
..|..+.++++|+.|++++|++++.. | .+..+++|++|++++|++++.+|...+. .+|+.|++++|++++.+|..
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 45566666666666666666666533 2 4566666666666666666545554333 56666666666666555444
Q ss_pred ccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCC-C-CCCCceEEEcCCCcCCCCCC
Q 004822 317 FSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCLNTN 389 (728)
Q Consensus 317 ~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~-~-~~~~l~~l~l~~N~~~~~~~ 389 (728)
+. ++|+.|+|++|+|+ .+|..++ .+++|+.|++++|+++++++. + .+++++.+++++|+|.|+|+
T Consensus 448 l~--~~L~~L~L~~N~l~-~ip~~~~-----~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 448 LP--PKVKVLDLHNNRIM-SIPKDVT-----HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CC--TTCSEEECCSSCCC-CCCTTTT-----SSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hc--CcCCEEECCCCcCc-ccChhhc-----CCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 33 56666777777666 5666655 566677777777777766654 3 35666777777777776653
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6e-34 Score=310.37 Aligned_cols=323 Identities=18% Similarity=0.164 Sum_probs=226.0
Q ss_pred CCCCCCCCCCCCCcceEEc---CCC------CC-----CCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCc
Q 004822 54 LSNWNRGDPCTSNWTGVLC---FNT------TM-----DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKIS 119 (728)
Q Consensus 54 l~~w~~~~~C~~~w~gv~C---~~~------~~-----~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 119 (728)
+++|.....|.+.|.+..| +.. .. .-.+.+++.|+++++.+....+..+..+++|++|+|++|.+.
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~ 82 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82 (390)
T ss_dssp ----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC
T ss_pred cCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc
Confidence 5678877666655554444 211 00 113478899999999988665556789999999999999999
Q ss_pred cCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccC
Q 004822 120 GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELS 199 (728)
Q Consensus 120 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 199 (728)
+..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|++++|.+.+..+..+.
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 88888999999999999999999988888899999999999999999977667789999999999999999988888899
Q ss_pred CCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCccc---------------ccCCCCCcEEEccCCcCc
Q 004822 200 RLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPAS---------------YSNMSKLLKLSLRNCSLQ 264 (728)
Q Consensus 200 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~---------------~~~l~~L~~L~L~~n~l~ 264 (728)
.+++|++|++++|++++.. +..+++|+.|++++|.+++...+.. ....++|+.|++++|.++
T Consensus 163 ~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLT 239 (390)
T ss_dssp SCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCc
Confidence 9999999999999998652 4556666666666666653211110 012345666666666666
Q ss_pred cCCCCCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhh
Q 004822 265 GPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQ 343 (728)
Q Consensus 265 ~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~ 343 (728)
+. +.+..+++|++|++++|.+++..|..+.. ++|+.|+|++|++++ +|..+..+++|+.|++++|+++ .+|..+.
T Consensus 240 ~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~- 315 (390)
T 3o6n_A 240 DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP- 315 (390)
T ss_dssp CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH-
T ss_pred cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccc-
Confidence 43 35566667777777777776554544322 567777777777764 3455566677777777777776 4555555
Q ss_pred hccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCCCCC
Q 004822 344 SRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNT 388 (728)
Q Consensus 344 ~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~~~~ 388 (728)
.+++|+.|++++|+++.++ ...+++++.|++++|+|.|++
T Consensus 316 ----~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 316 ----QFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp ----HHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHHH
T ss_pred ----ccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCccchh
Confidence 4466777777777776664 223566777777777776553
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-33 Score=319.28 Aligned_cols=311 Identities=17% Similarity=0.164 Sum_probs=243.0
Q ss_pred CcceEEcCCCC-----CCC-CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccC
Q 004822 66 NWTGVLCFNTT-----MDD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNG 139 (728)
Q Consensus 66 ~w~gv~C~~~~-----~~~-~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 139 (728)
.|.|+ |+... ++. -..+++.|++++|++++..|..|+++++|++|+|++|++.+..|..|.++++|++|+|++
T Consensus 5 ~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 5 DASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp CTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 68888 75321 222 235899999999999998899999999999999999999999899999999999999999
Q ss_pred CcCCCcCCccCCCCCCCCEEEeeccCCCCC-CcHhhhccCCCCEEEccCccccccc-ccccCCCCCCcEEECcCCCCCCC
Q 004822 140 NELTGSLPEELGYLPKLDRIQIDQNYISGS-LPKSFANLNKTRHFHMNNNSISGQI-PPELSRLPSLVHMLLDNNNLTGY 217 (728)
Q Consensus 140 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~ 217 (728)
|.+++..|..|+++++|++|++++|.+++. .|..|.++++|++|++++|.+.+.+ +..|..+++|++|++++|++++.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 999988888899999999999999999873 5778999999999999999954444 46899999999999999999998
Q ss_pred CCcCCCCCCCCcEEEcccccCCCCCCccc-ccCCCCCcEEEccCCcCccCC----CCCCCC-------------------
Q 004822 218 LPPELSELPKLLILQLDNNNFEGTTIPAS-YSNMSKLLKLSLRNCSLQGPM----PDLSRI------------------- 273 (728)
Q Consensus 218 ~~~~l~~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~~~----~~l~~l------------------- 273 (728)
.|..+..+++|+.|+++.|.+. .+|.. +..+++|++|++++|++++.. +....+
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSESA--FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBST--THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ChhhhhccccCceEecccCccc--ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 9999988887777777777764 34443 345667777777777666531 000111
Q ss_pred --------------------------------------------------------------------CCcCEEEccCCC
Q 004822 274 --------------------------------------------------------------------PNLGYLDLSSNQ 285 (728)
Q Consensus 274 --------------------------------------------------------------------~~L~~L~Ls~N~ 285 (728)
++|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 245555555555
Q ss_pred CcccCCCCCc--cCCccEEEccCCCCCCcCch---hccCCccCceeecccccCcccCC--cchhhhccCCCCCCcEEECc
Q 004822 286 LNGSIPPGRL--SLNITTIKLSNNKLTGTIPS---NFSGLPRLQRLFIANNSLSGSIP--SSIWQSRTLNATETFILDFQ 358 (728)
Q Consensus 286 l~~~ip~~~~--~~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~ip--~~~~~~~~l~~~~L~~L~l~ 358 (728)
+. .+|...+ .++|+.|++++|++++.+|. .+..+++|+.|++++|++++..+ ..+. .+++|+.||++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----~l~~L~~L~Ls 395 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL-----TLKNLTSLDIS 395 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG-----GCTTCCEEECT
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh-----cCCCCCEEECC
Confidence 54 4554433 27889999999999877653 36788899999999998885332 2344 67888899999
Q ss_pred CCcCCCcCCCC-CCCCceEEEcCCCcCC
Q 004822 359 NNNLTNISGSF-NIPPNVTVRLRGNPFC 385 (728)
Q Consensus 359 ~N~l~~~~~~~-~~~~l~~l~l~~N~~~ 385 (728)
+|++++++..+ .+++++.|++++|.+.
T Consensus 396 ~N~l~~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 396 RNTFHPMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp TCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred CCCCccCChhhcccccccEEECCCCCcc
Confidence 99998887655 4678888999888875
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7e-33 Score=321.03 Aligned_cols=316 Identities=18% Similarity=0.242 Sum_probs=244.3
Q ss_pred eEEcCCCC---CCCCC-cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCC
Q 004822 69 GVLCFNTT---MDDGY-LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTG 144 (728)
Q Consensus 69 gv~C~~~~---~~~~~-~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 144 (728)
.+.|.... +|.++ ..++.|||++|+|++..+.+|.++++|++|||++|+|+++.|.+|.++++|++|+|++|++++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 47787543 34444 379999999999998888899999999999999999998888899999999999999999998
Q ss_pred cCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccc-cccccCCCCCCcEEECcCCCCCCCCCcCCC
Q 004822 145 SLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQ-IPPELSRLPSLVHMLLDNNNLTGYLPPELS 223 (728)
Q Consensus 145 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 223 (728)
..+..|.++++|++|+|++|++++..+..|+++++|++|++++|.+... .|..++.+++|++|++++|++++..+..+.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~ 194 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 194 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH
T ss_pred CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc
Confidence 7778899999999999999999988888899999999999999998753 577888899999999999887643222111
Q ss_pred --------------------------------------------------------------------------------
Q 004822 224 -------------------------------------------------------------------------------- 223 (728)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (728)
T Consensus 195 ~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 195 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 004822 224 -------------------------------------------------------------------------------- 223 (728)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (728)
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l 354 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL 354 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEE
T ss_pred cccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhc
Confidence
Q ss_pred --------------CCCCCcEEEcccccCCCC------------------------------------------------
Q 004822 224 --------------ELPKLLILQLDNNNFEGT------------------------------------------------ 241 (728)
Q Consensus 224 --------------~l~~L~~L~L~~N~l~~~------------------------------------------------ 241 (728)
.+++|+.|++++|.+...
T Consensus 355 ~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 355 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp EEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEES
T ss_pred ccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccc
Confidence 112233333333333110
Q ss_pred -CCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCccc-CCCCCcc-CCccEEEccCCCCCCcCchhc
Q 004822 242 -TIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGS-IPPGRLS-LNITTIKLSNNKLTGTIPSNF 317 (728)
Q Consensus 242 -~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~ 317 (728)
..+..+..+++++.++++.|.+.+..+ .+..++.|+.|++++|.+... +|..+.. ++|+.|+|++|+|++.+|..|
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f 514 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHH
Confidence 000112333444555555555555555 456677888888888875443 3433222 789999999999999999999
Q ss_pred cCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCC--CC-CCceEEEcCCCcCCCCCC
Q 004822 318 SGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NI-PPNVTVRLRGNPFCLNTN 389 (728)
Q Consensus 318 ~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~--~~-~~l~~l~l~~N~~~~~~~ 389 (728)
.++++|++|+|++|+|++..|..+. .+++|++|||++|+|+++++.. .+ .+++.|++++|||.|+|.
T Consensus 515 ~~l~~L~~L~Ls~N~l~~l~~~~~~-----~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 515 NSLSSLQVLNMSHNNFFSLDTFPYK-----CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCCGGGT-----TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred cCCCCCCEEECCCCcCCCCChhHHh-----CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999987777777 7889999999999999987653 34 578999999999999975
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-33 Score=323.34 Aligned_cols=324 Identities=18% Similarity=0.172 Sum_probs=238.8
Q ss_pred CCCCCCCCCCCCCC---cceEEcCCC------CC-----CCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCC
Q 004822 53 KLSNWNRGDPCTSN---WTGVLCFNT------TM-----DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKI 118 (728)
Q Consensus 53 ~l~~w~~~~~C~~~---w~gv~C~~~------~~-----~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l 118 (728)
.+++|.....|... |.++.|+.. .. .-.+.+++.|++.++.+....+..+..+++|++|+|++|.+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 46789877666533 666655421 00 11246788999999998876666788999999999999999
Q ss_pred ccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCccccccccccc
Q 004822 119 SGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPEL 198 (728)
Q Consensus 119 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 198 (728)
.+..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|.++++|++|+|++|.+.+..|..|
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 98888899999999999999999998888889999999999999999998777778999999999999999998888899
Q ss_pred CCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccc---------------cCCCCCcEEEccCCcC
Q 004822 199 SRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASY---------------SNMSKLLKLSLRNCSL 263 (728)
Q Consensus 199 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~---------------~~l~~L~~L~L~~n~l 263 (728)
..+++|++|++++|++++.. +..+++|+.|++++|.+++...|..+ ...++|+.|+|++|.+
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL 244 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC
T ss_pred hcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC
Confidence 99999999999999998653 45566677777776666542111110 1124566677777766
Q ss_pred ccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchh
Q 004822 264 QGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIW 342 (728)
Q Consensus 264 ~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 342 (728)
++. +.+..+++|+.|+|++|.+++.+|..+.. ++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+.
T Consensus 245 ~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 245 TDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp CCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred CCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 653 45666777777777777777665554333 677777777777775 4556666777777777777777 5666665
Q ss_pred hhccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCCCCC
Q 004822 343 QSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNT 388 (728)
Q Consensus 343 ~~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~~~~ 388 (728)
.+++|+.|++++|++++++. ..++.++.|++++|+|.|++
T Consensus 322 -----~l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 322 -----QFDRLENLYLDHNSIVTLKL-STHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp -----HHTTCSEEECCSSCCCCCCC-CTTCCCSEEECCSSCEEHHH
T ss_pred -----cCCCCCEEECCCCCCCCcCh-hhcCCCCEEEeeCCCCCChh
Confidence 45677777777777777642 23567777888888777654
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.8e-31 Score=319.01 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=108.7
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCC-CccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSI-PKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 159 (728)
..+++.|+|++|.+++..+..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+++..|+.|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 356777777777777777777777777777777777554444 6667777777777777777777777777777777777
Q ss_pred EeeccCCCCCCcHh--hhccCCCCEEEccCcccccccc-cccCCCCCCcEEECcCCCCCCCCCcCCCCC--CCCcEEEcc
Q 004822 160 QIDQNYISGSLPKS--FANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLPPELSEL--PKLLILQLD 234 (728)
Q Consensus 160 ~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l--~~L~~L~L~ 234 (728)
+|++|.+++..|.. |.++++|++|+|++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 77777777655544 6777777777777777765543 456777777777777777766666555544 455555555
Q ss_pred cccCCC
Q 004822 235 NNNFEG 240 (728)
Q Consensus 235 ~N~l~~ 240 (728)
+|.+.+
T Consensus 183 ~n~l~~ 188 (844)
T 3j0a_A 183 ANSLYS 188 (844)
T ss_dssp CSBSCC
T ss_pred CCcccc
Confidence 555444
No 20
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.8e-32 Score=316.40 Aligned_cols=318 Identities=21% Similarity=0.245 Sum_probs=246.2
Q ss_pred CCCCCcceEEcCCCC---CCCC-CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEec
Q 004822 62 PCTSNWTGVLCFNTT---MDDG-YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLL 137 (728)
Q Consensus 62 ~C~~~w~gv~C~~~~---~~~~-~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 137 (728)
+|.+.++.+.|.... ++.. ..+++.|++++|++++..+..|+++++|++|+|++|.+.+..|..|+++++|++|+|
T Consensus 1 ~C~~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 80 (680)
T 1ziw_A 1 KCTVSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNL 80 (680)
T ss_dssp ---CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEEC
T ss_pred CceeECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEEC
Confidence 366677788897543 2322 358999999999999887788999999999999999999999999999999999999
Q ss_pred cCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCC
Q 004822 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY 217 (728)
Q Consensus 138 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 217 (728)
++|.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|++++|.+.+..|..+..+++|++|++++|++++.
T Consensus 81 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 81 QHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred CCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc
Confidence 99999976666899999999999999999988889999999999999999999998899999999999999999999987
Q ss_pred CCcCCC--CCCCCcEEEcccccCCCCCCcccccCCC---------------------------CCcEEEccCCcCccCCC
Q 004822 218 LPPELS--ELPKLLILQLDNNNFEGTTIPASYSNMS---------------------------KLLKLSLRNCSLQGPMP 268 (728)
Q Consensus 218 ~~~~l~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~---------------------------~L~~L~L~~n~l~~~~~ 268 (728)
.+..+. .+++|+.|++++|.+++ ..|..+..++ +|+.|++++|.+++..+
T Consensus 161 ~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~ 239 (680)
T 1ziw_A 161 KSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSN 239 (680)
T ss_dssp CHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECT
T ss_pred CHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccCh
Confidence 776554 56899999999999987 5666666554 45666666666666555
Q ss_pred -CCCCCC--CcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeecccccCccc-----CCc
Q 004822 269 -DLSRIP--NLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGS-----IPS 339 (728)
Q Consensus 269 -~l~~l~--~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----ip~ 339 (728)
.+..++ +|+.|++++|.+++..|..+.. ++|+.|++++|++++..|..|..+++|+.|++++|...+. +|.
T Consensus 240 ~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~ 319 (680)
T 1ziw_A 240 TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPK 319 (680)
T ss_dssp TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCE
T ss_pred hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccc
Confidence 444443 3777777777776544443322 6677777777777777777777777777777776655432 222
Q ss_pred ----chhhhccCCCCCCcEEECcCCcCCCcCCCC--CCCCceEEEcCCCcCC
Q 004822 340 ----SIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFC 385 (728)
Q Consensus 340 ----~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~--~~~~l~~l~l~~N~~~ 385 (728)
.+. .+++|+.|++++|+++++++.. .+++++.|++++|.+.
T Consensus 320 i~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 320 IDDFSFQ-----WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp ECTTTTT-----TCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSC
T ss_pred cChhhcc-----cCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchh
Confidence 233 5677788888888888776542 4677778888877654
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6e-32 Score=302.68 Aligned_cols=294 Identities=19% Similarity=0.205 Sum_probs=266.8
Q ss_pred eeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeec
Q 004822 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (728)
Q Consensus 84 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 163 (728)
-+.++.++++++ .+|..+. ++++.|+|++|++++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 357888888887 4566553 6899999999999998899999999999999999999999999999999999999999
Q ss_pred cCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCC
Q 004822 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTI 243 (728)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 243 (728)
|.+++..+..|.++++|++|+|++|.+.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++ ..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cC
Confidence 99998888889999999999999999999989999999999999999999999889999999999999999999986 45
Q ss_pred cccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCc
Q 004822 244 PASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLP 321 (728)
Q Consensus 244 p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~ 321 (728)
+..+.++++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.+|...+. .+|+.|++++|++++..+..|..++
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 248 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCT
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcc
Confidence 5679999999999999999998877 7899999999999999988888877555 6999999999999977778899999
Q ss_pred cCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCC-C-CCCCceEEEcCCCcCCC
Q 004822 322 RLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCL 386 (728)
Q Consensus 322 ~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~-~-~~~~l~~l~l~~N~~~~ 386 (728)
+|+.|+|++|++++..+..+. .+++|+.|++++|+++++.+. + .+++++.|++++|.+..
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 310 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLH-----ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCT-----TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred ccCeeECCCCcCCccChhhcc-----ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence 999999999999977777776 789999999999999998654 3 58899999999999864
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-33 Score=298.18 Aligned_cols=248 Identities=26% Similarity=0.475 Sum_probs=217.2
Q ss_pred CCCCEEEccCCCCcc--CCCccccCCCCCcEEeccC-CcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCE
Q 004822 106 SYLTILDFMWNKISG--SIPKEIGNIKSLELLLLNG-NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (728)
Q Consensus 106 ~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (728)
.+++.|+|++|.+.+ .+|..|.++++|++|++++ |.+.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999999998 8999999999999999995 9999999999999999999999999999999999999999999
Q ss_pred EEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCC-CCcEEEcccccCCCCCCcccccCCCCCcEEEccCC
Q 004822 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELP-KLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNC 261 (728)
Q Consensus 183 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 261 (728)
|+|++|.+.+.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++ .+|..+..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~-~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG-KIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-ECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-cCChHHhCCc-ccEEECcCC
Confidence 99999999999999999999999999999999989999999998 99999999999987 7888888887 999999999
Q ss_pred cCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcc
Q 004822 262 SLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSS 340 (728)
Q Consensus 262 ~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~ 340 (728)
.+++..| .+..+++|+.|++++|.+++.+|.....++|++|+|++|++++.+|..|..+++|+.|+|++|+++|.+|..
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9998777 688889999999999998876666433478888888888888888888888888888888888888877765
Q ss_pred hhhhccCCCCCCcEEECcCCc
Q 004822 341 IWQSRTLNATETFILDFQNNN 361 (728)
Q Consensus 341 ~~~~~~l~~~~L~~L~l~~N~ 361 (728)
. .+++|+.+++++|.
T Consensus 288 -~-----~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -G-----NLQRFDVSAYANNK 302 (313)
T ss_dssp -T-----TGGGSCGGGTCSSS
T ss_pred -c-----cccccChHHhcCCC
Confidence 3 45556666666554
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.3e-33 Score=307.64 Aligned_cols=282 Identities=18% Similarity=0.203 Sum_probs=241.1
Q ss_pred CCcceeEEECCCCCCcccc-CccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCcc--CCCCCCC
Q 004822 80 GYLHLRELQLLNLNLSGNL-SPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEE--LGYLPKL 156 (728)
Q Consensus 80 ~~~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L 156 (728)
.+.+|+.|++++|.+.+.+ +..|.++++|++|+|++|++.+..|..|+++++|++|+|++|.+++..|.. |..+++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 4678999999999997665 457899999999999999999888999999999999999999998755554 8999999
Q ss_pred CEEEeeccCCCCCCcHh-hhccCCCCEEEccCcccccccccccCCC----------------------------------
Q 004822 157 DRIQIDQNYISGSLPKS-FANLNKTRHFHMNNNSISGQIPPELSRL---------------------------------- 201 (728)
Q Consensus 157 ~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l---------------------------------- 201 (728)
++|+|++|.+++..|.. +.++++|++|++++|.+.+..+..+..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999999887876 8899999999999999988777665443
Q ss_pred CCCcEEECcCCCCCCCCCcCCC---------------------------------------CCCCCcEEEcccccCCCCC
Q 004822 202 PSLVHMLLDNNNLTGYLPPELS---------------------------------------ELPKLLILQLDNNNFEGTT 242 (728)
Q Consensus 202 ~~L~~L~L~~N~l~~~~~~~l~---------------------------------------~l~~L~~L~L~~N~l~~~~ 242 (728)
++|++|++++|++++..|..+. ..++|+.|++++|.+++ .
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~ 290 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-L 290 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-E
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc-c
Confidence 6788999999887653332221 12689999999999987 6
Q ss_pred CcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCC
Q 004822 243 IPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGL 320 (728)
Q Consensus 243 ~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l 320 (728)
.|..+..+++|++|++++|++++..+ .+..+++|++|++++|.+++..|..+.. ++|+.|+|++|++++..|..|..+
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 370 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL 370 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence 78889999999999999999999887 7899999999999999998655554333 899999999999999999999999
Q ss_pred ccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCC
Q 004822 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG 367 (728)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~ 367 (728)
++|++|+|++|++++..+..+. .+++|+.|++++|++++-.+
T Consensus 371 ~~L~~L~L~~N~l~~~~~~~~~-----~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 371 PNLKELALDTNQLKSVPDGIFD-----RLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCCSCCCTTTTT-----TCTTCCEEECCSSCBCCCTT
T ss_pred ccccEEECCCCccccCCHhHhc-----cCCcccEEEccCCCcccCCC
Confidence 9999999999999965444555 78999999999999997654
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-32 Score=309.21 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=88.5
Q ss_pred CCCCCcEEEcccccCCCCCC--cccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc--CCc
Q 004822 224 ELPKLLILQLDNNNFEGTTI--PASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNI 299 (728)
Q Consensus 224 ~l~~L~~L~L~~N~l~~~~~--p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L 299 (728)
.+++|++|++++|.+++ .. +..+..+++|+.|++++|.+++..+.+..+++|+.|++++|.+.+..|...+. ++|
T Consensus 345 ~~~~L~~L~l~~n~l~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSF-KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBE-EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCc-cccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 45677777777777764 21 45566666666666666666655444555566666666666655444422222 455
Q ss_pred cEEEccCCCCCCcCchhccCCccCceeecccccCc-ccCCcchhhhccCCCCCCcEEECcCCcCCCcCC-CC-CCCCceE
Q 004822 300 TTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS-GSIPSSIWQSRTLNATETFILDFQNNNLTNISG-SF-NIPPNVT 376 (728)
Q Consensus 300 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~-~~-~~~~l~~ 376 (728)
+.|++++|++++..|..|..+++|+.|++++|+++ +.+|..+. .+++|+.|++++|+++++.+ .+ .+++++.
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-----ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-----TCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh-----cccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 56666666555555555555555555555555555 34555544 44555555555555555532 22 3455555
Q ss_pred EEcCCCcCCC
Q 004822 377 VRLRGNPFCL 386 (728)
Q Consensus 377 l~l~~N~~~~ 386 (728)
|++++|++.+
T Consensus 499 L~l~~n~l~~ 508 (570)
T 2z63_A 499 LNMASNQLKS 508 (570)
T ss_dssp EECCSSCCSC
T ss_pred EeCCCCcCCC
Confidence 5555555543
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-31 Score=312.71 Aligned_cols=300 Identities=21% Similarity=0.245 Sum_probs=175.2
Q ss_pred eeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCcccc---------------------------------CCC
Q 004822 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIG---------------------------------NIK 130 (728)
Q Consensus 84 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~---------------------------------~l~ 130 (728)
|+.|++++|.+++..+..|+.+++|++|++++|++.+..|..|. .++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 66666666666666566666666666666666666655554444 444
Q ss_pred CCcEEeccCCcCCCcCCccCCCCCCCCEEEeecc----------------------------CCCCCCcHhhhccCCCCE
Q 004822 131 SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN----------------------------YISGSLPKSFANLNKTRH 182 (728)
Q Consensus 131 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N----------------------------~l~~~~p~~~~~l~~L~~ 182 (728)
+|++|++++|.+++..+..|..+++|++|++++| ++++..|..|..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 4555555555555555555555554444444333 333333444444555555
Q ss_pred EEccCcccccccc-cccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCC-CCcccccCCCCCcEEEccC
Q 004822 183 FHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT-TIPASYSNMSKLLKLSLRN 260 (728)
Q Consensus 183 L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~ 260 (728)
|++++|.+.+.+| ..|..+++|++|++++|++++..+..|..+++|+.|++++|.+++. .+|..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 5555555544333 3445555555555555555544555555555555555555555421 3556667777777777777
Q ss_pred CcCccCCC-CCCCCCCcCEEEccCCCCcccC----CCC---Ccc--CCccEEEccCCCCCCcCchhccCCccCceeeccc
Q 004822 261 CSLQGPMP-DLSRIPNLGYLDLSSNQLNGSI----PPG---RLS--LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIAN 330 (728)
Q Consensus 261 n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~i----p~~---~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 330 (728)
|++++.++ .+..+++|++|++++|++++.. |.. .+. ++|+.|+|++|+++...+..|.++++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 77776665 4667777777777777776421 111 111 5677777777777755555677777777777777
Q ss_pred ccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCC---CCCCceEEEcCCCcCCCCC
Q 004822 331 NSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF---NIPPNVTVRLRGNPFCLNT 388 (728)
Q Consensus 331 N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~---~~~~l~~l~l~~N~~~~~~ 388 (728)
|++++..+..+. .+++|+.|++++|+++++++.. .+++++.+++++|+|.|+|
T Consensus 570 N~l~~l~~~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 570 NNLNTLPASVFN-----NQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp SCCCCCCTTTTT-----TCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCcCCHhHhC-----CCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 777743333333 5667777777777777766432 2466777777777777765
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.7e-32 Score=322.86 Aligned_cols=298 Identities=24% Similarity=0.251 Sum_probs=256.4
Q ss_pred CCCcceeEEECCCCCCcccc-CccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCcc--CCCCCC
Q 004822 79 DGYLHLRELQLLNLNLSGNL-SPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEE--LGYLPK 155 (728)
Q Consensus 79 ~~~~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~ 155 (728)
..+.+|+.|++++|+..+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|+|++|.+++.+|.. |.++++
T Consensus 45 ~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 45 PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 45678999999999777666 778999999999999999999999999999999999999999999877765 999999
Q ss_pred CCEEEeeccCCCCCCc-HhhhccCCCCEEEccCcccccccccccCCC--CCCcEEECcCCCCCCCCCcCCCCCCC-----
Q 004822 156 LDRIQIDQNYISGSLP-KSFANLNKTRHFHMNNNSISGQIPPELSRL--PSLVHMLLDNNNLTGYLPPELSELPK----- 227 (728)
Q Consensus 156 L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~~~~l~~l~~----- 227 (728)
|++|+|++|.+++..+ ..|.++++|++|+|++|.+.+..+..+..+ ++|+.|++++|.+.+..|..+..+++
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 9999999999998765 689999999999999999999888888887 89999999999999988888777766
Q ss_pred -CcEEEcccccCCCCCCcccccC--------------------------------------CCCCcEEEccCCcCccCCC
Q 004822 228 -LLILQLDNNNFEGTTIPASYSN--------------------------------------MSKLLKLSLRNCSLQGPMP 268 (728)
Q Consensus 228 -L~~L~L~~N~l~~~~~p~~~~~--------------------------------------l~~L~~L~L~~n~l~~~~~ 268 (728)
|+.|++++|.+++ ..+..+.. .++|+.|++++|.+.+..+
T Consensus 205 ~L~~L~Ls~n~l~~-~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 205 VLEILDVSGNGWTV-DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CBSEEBCSSCCSST-TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred ceeEEecCCCcCch-hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 9999999998876 44433321 2679999999999988777
Q ss_pred -CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhcc
Q 004822 269 -DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT 346 (728)
Q Consensus 269 -~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~ 346 (728)
.+..+++|+.|+|++|++++..|..+.. ++|+.|+|++|++++..|..|..+++|+.|++++|++++..+..+.
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~---- 359 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK---- 359 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC----
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc----
Confidence 6888999999999999998666655433 7899999999999988888999999999999999999866666666
Q ss_pred CCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCC
Q 004822 347 LNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 385 (728)
Q Consensus 347 l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~ 385 (728)
.+++|+.|++++|.+++++. ++++..+++++|++.
T Consensus 360 -~l~~L~~L~Ls~N~l~~i~~---~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 360 -FLEKLQTLDLRDNALTTIHF---IPSIPDIFLSGNKLV 394 (844)
T ss_dssp -SCCCCCEEEEETCCSCCCSS---CCSCSEEEEESCCCC
T ss_pred -CCCCCCEEECCCCCCCcccC---CCCcchhccCCCCcc
Confidence 67899999999999987764 566777777777765
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.98 E-value=1.5e-31 Score=306.13 Aligned_cols=299 Identities=19% Similarity=0.190 Sum_probs=196.2
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+.+|+.|++++|++++..+..|+++++|++|+|++|.+++..|..|.++++|++|++++|++++..+..++++++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 44555555555555555555555556666666666655555555555666666666666665544444566666666666
Q ss_pred eeccCCCC-CCcHhhhccCCCCEEEccCcccccccccccCCCCCC----cEEECcCCCCCCCCC----------------
Q 004822 161 IDQNYISG-SLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSL----VHMLLDNNNLTGYLP---------------- 219 (728)
Q Consensus 161 L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~L~~N~l~~~~~---------------- 219 (728)
+++|.+++ .+|..|.++++|++|++++|.+.+..+..++.+++| ++|++++|.+++..+
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n 210 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccc
Confidence 66666655 246666666666666666666554444333333333 333333333222111
Q ss_pred -----------------------------------------------------------------cCCCCCCCCcEEEcc
Q 004822 220 -----------------------------------------------------------------PELSELPKLLILQLD 234 (728)
Q Consensus 220 -----------------------------------------------------------------~~l~~l~~L~~L~L~ 234 (728)
..+..+++|++|+++
T Consensus 211 ~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 290 (570)
T 2z63_A 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290 (570)
T ss_dssp CSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEE
T ss_pred cccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEec
Confidence 122223444444444
Q ss_pred cccCCCCCCcccc------------------------------------------cCCCCCcEEEccCCcCccCC--C-C
Q 004822 235 NNNFEGTTIPASY------------------------------------------SNMSKLLKLSLRNCSLQGPM--P-D 269 (728)
Q Consensus 235 ~N~l~~~~~p~~~------------------------------------------~~l~~L~~L~L~~n~l~~~~--~-~ 269 (728)
+|.++. +|..+ ..+++|+.|++++|++++.. + .
T Consensus 291 ~~~l~~--l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 291 SVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368 (570)
T ss_dssp SCEECS--CCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred Cccchh--hhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc
Confidence 444431 22211 45788999999999998764 3 5
Q ss_pred CCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCc-hhccCCccCceeecccccCcccCCcchhhhccC
Q 004822 270 LSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIP-SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTL 347 (728)
Q Consensus 270 l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l 347 (728)
+..+++|++|++++|.+++..+. +.. ++|+.|++++|++++..| ..+..+++|+.|++++|++++..|..+.
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----- 442 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN----- 442 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTT-----
T ss_pred ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhh-----
Confidence 77889999999999999854443 222 799999999999998766 5789999999999999999988888887
Q ss_pred CCCCCcEEECcCCcCCC--cCCCC-CCCCceEEEcCCCcCCCC
Q 004822 348 NATETFILDFQNNNLTN--ISGSF-NIPPNVTVRLRGNPFCLN 387 (728)
Q Consensus 348 ~~~~L~~L~l~~N~l~~--~~~~~-~~~~l~~l~l~~N~~~~~ 387 (728)
.+++|+.|++++|++++ ++..+ .+++++.|++++|++.+.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccC
Confidence 78999999999999983 45444 588999999999998754
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=7.7e-31 Score=279.05 Aligned_cols=265 Identities=24% Similarity=0.322 Sum_probs=144.8
Q ss_pred CCCCCcceEEcCCCCC---CC-CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEec
Q 004822 62 PCTSNWTGVLCFNTTM---DD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLL 137 (728)
Q Consensus 62 ~C~~~w~gv~C~~~~~---~~-~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 137 (728)
.|.|.|..+.|.+..+ +. -.++++.|++++|++++..+..|+++++|++|+|++|.+++..|..|.++++|++|++
T Consensus 28 ~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555677777754321 11 1235666666666666555555666666666666666666555666666666666666
Q ss_pred cCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCccccc--ccccccCCCCCCcEEECcCCCCC
Q 004822 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG--QIPPELSRLPSLVHMLLDNNNLT 215 (728)
Q Consensus 138 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~ 215 (728)
++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.. ..+..+..+++|++|++++|+++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 666665 3444333 556666666666665555566666666666666666532 44455555666666666666655
Q ss_pred CCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCC
Q 004822 216 GYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGR 294 (728)
Q Consensus 216 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~ 294 (728)
. +|..+. ++|++|++++|.+++ ..+..+..+++|+.|++++|.+++..+ .+..+++|+.|++++|+++ .+|..+
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 3 333332 556666666665554 334555555555555555555555444 4555555555555555555 444432
Q ss_pred cc-CCccEEEccCCCCCCcCchhccCC------ccCceeecccccCc
Q 004822 295 LS-LNITTIKLSNNKLTGTIPSNFSGL------PRLQRLFIANNSLS 334 (728)
Q Consensus 295 ~~-~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~L~~N~l~ 334 (728)
.. ++|+.|++++|++++..+..|... +.|+.|++++|.+.
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 22 445555555555554444444322 34444455555443
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.98 E-value=1.7e-31 Score=304.36 Aligned_cols=152 Identities=20% Similarity=0.348 Sum_probs=92.8
Q ss_pred CCCCCCcEEEcccccCCCCCCc---ccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCc
Q 004822 223 SELPKLLILQLDNNNFEGTTIP---ASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNI 299 (728)
Q Consensus 223 ~~l~~L~~L~L~~N~l~~~~~p---~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L 299 (728)
+.+++|++|++++|++++ ++ ..+..+++|++|++++|+++..+..+..+++|++|++++|+++ .+|.. ...+|
T Consensus 358 ~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~-~~~~L 433 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRS--MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTC-IPQTL 433 (549)
T ss_dssp TSSTTCCEEECTTSCCCC--HHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTT-SCTTC
T ss_pred hccccCcEEEccCCcccc--cccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccch-hcCCc
Confidence 344444444444444432 11 2345555555555555555543334555556666666666655 33332 22466
Q ss_pred cEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCC-C-CCCCceEE
Q 004822 300 TTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTV 377 (728)
Q Consensus 300 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~-~-~~~~l~~l 377 (728)
+.|++++|++++.+ ..+++|+.|+|++|+|+ .+|.. . .+++|++|++++|+++++++. + .+++++.|
T Consensus 434 ~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~-~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 502 (549)
T 2z81_A 434 EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDA-S-----LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKI 502 (549)
T ss_dssp SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCG-G-----GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEE
T ss_pred eEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCc-c-----cCccCCEEecCCCccCCcCHHHHhcCcccCEE
Confidence 66666666666532 46778888888888887 66753 2 467788888888888887764 2 46778888
Q ss_pred EcCCCcCCCCCC
Q 004822 378 RLRGNPFCLNTN 389 (728)
Q Consensus 378 ~l~~N~~~~~~~ 389 (728)
++++|+|.|+++
T Consensus 503 ~l~~N~~~~~~~ 514 (549)
T 2z81_A 503 WLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCBCCCHH
T ss_pred EecCCCccCCCc
Confidence 888888877764
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=2.7e-31 Score=300.62 Aligned_cols=292 Identities=19% Similarity=0.169 Sum_probs=232.7
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
.+++.|++++|.+++..|..|.++++|++|+|++|++++..|..|.++++|++|+|++|+++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 68999999999999888889999999999999999999988999999999999999999999 56665 8999999999
Q ss_pred eccCCCC-CCcHhhhccCCCCEEEccCcccccccccccCCCCCC--cEEECcCCCC--CCCCCcCCCCCC----------
Q 004822 162 DQNYISG-SLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSL--VHMLLDNNNL--TGYLPPELSELP---------- 226 (728)
Q Consensus 162 ~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l--~~~~~~~l~~l~---------- 226 (728)
++|.+++ .+|..|+++++|++|++++|.+.+ ..+..+++| ++|++++|++ .+..|..+..+.
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999998 478999999999999999999875 356667777 8899988888 666666665532
Q ss_pred -------------------------------------------------------------------------CCcEEEc
Q 004822 227 -------------------------------------------------------------------------KLLILQL 233 (728)
Q Consensus 227 -------------------------------------------------------------------------~L~~L~L 233 (728)
+|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 6777777
Q ss_pred ccccCCCCCCcccc-----cCCCCCcEEEccCCcC--------------------------ccCCCCCCCCCCcCEEEcc
Q 004822 234 DNNNFEGTTIPASY-----SNMSKLLKLSLRNCSL--------------------------QGPMPDLSRIPNLGYLDLS 282 (728)
Q Consensus 234 ~~N~l~~~~~p~~~-----~~l~~L~~L~L~~n~l--------------------------~~~~~~l~~l~~L~~L~Ls 282 (728)
++|.+++ .+|..+ ..+++|+.+++++|.+ .... ....+++|++|+++
T Consensus 255 ~~n~l~~-~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQG-QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML-CPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEES-CCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC-CCSSCCCCCEEECC
T ss_pred ecccccC-ccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc-chhhCCcccEEEeE
Confidence 7777776 667666 5565555555555554 2111 12577889999999
Q ss_pred CCCCcccCCCCCcc-CCccEEEccCCCCCC--cCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcC
Q 004822 283 SNQLNGSIPPGRLS-LNITTIKLSNNKLTG--TIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQN 359 (728)
Q Consensus 283 ~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~ 359 (728)
+|++++.+|..+.. ++|+.|++++|++++ .+|..+..+++|+.|++++|++++.+|...+. .+++|+.|++++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~----~l~~L~~L~Ls~ 408 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS----WTKSLLSLNMSS 408 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC----CCTTCCEEECCS
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc----cCccCCEEECcC
Confidence 99998777765444 789999999999986 55677888999999999999998767765322 567888888888
Q ss_pred CcCCCcCCCCCCCCceEEEcCCCcCC
Q 004822 360 NNLTNISGSFNIPPNVTVRLRGNPFC 385 (728)
Q Consensus 360 N~l~~~~~~~~~~~l~~l~l~~N~~~ 385 (728)
|++++..+....++++.|++++|.+.
T Consensus 409 N~l~~~~~~~l~~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 409 NILTDTIFRCLPPRIKVLDLHSNKIK 434 (520)
T ss_dssp SCCCGGGGGSCCTTCCEEECCSSCCC
T ss_pred CCCCcchhhhhcccCCEEECCCCccc
Confidence 88876543222267888888888876
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9.2e-31 Score=278.67 Aligned_cols=287 Identities=22% Similarity=0.310 Sum_probs=150.7
Q ss_pred eeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeec
Q 004822 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQ 163 (728)
Q Consensus 84 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 163 (728)
++.+++++++++ .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++
T Consensus 35 l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 344444444443 2333332 4555566666555555555555555666666665555555555555556666666665
Q ss_pred cCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCC--CCCCcCCCCCCCCcEEEcccccCCCC
Q 004822 164 NYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT--GYLPPELSELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 164 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~ 241 (728)
|.++. +|..+. ++|++|++++|.+.+..+..|..+++|++|++++|.++ +..+..+..+ +|+.|++++|.+++
T Consensus 112 n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 55552 232222 45566666666555544445555566666666666554 2445555555 56666666666553
Q ss_pred CCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccC
Q 004822 242 TIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSG 319 (728)
Q Consensus 242 ~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~ 319 (728)
+|..+. ++|++|++++|.+++..+ .+..+++|+.|++++|++++..+..+.. ++|+.|++++|+++ .+|..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 262 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD 262 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence 343332 456666666666655554 4555666666666666665433322221 55666666666666 45555666
Q ss_pred CccCceeecccccCcccCCcchhhhc-cCCCCCCcEEECcCCcCC--CcCCC-C-CCCCceEEEcCCC
Q 004822 320 LPRLQRLFIANNSLSGSIPSSIWQSR-TLNATETFILDFQNNNLT--NISGS-F-NIPPNVTVRLRGN 382 (728)
Q Consensus 320 l~~L~~L~L~~N~l~~~ip~~~~~~~-~l~~~~L~~L~l~~N~l~--~~~~~-~-~~~~l~~l~l~~N 382 (728)
+++|+.|++++|+|++..+..+.... ......|+.|++++|.+. ++.+. + .++.++.+++++|
T Consensus 263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 66666666666666644444433210 001345566666666665 33322 2 3555566666655
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.7e-32 Score=286.19 Aligned_cols=275 Identities=18% Similarity=0.261 Sum_probs=146.1
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCCCCCCC----C-CCCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccc--c
Q 004822 32 TDPIEVSALRSIKKSLV-DDYSKLSNWN----R-GDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEI--G 103 (728)
Q Consensus 32 ~~~~~~~~l~~~~~~~~-~~~~~l~~w~----~-~~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~--~ 103 (728)
...+|++||++||+.+. ++.+.+..|. . .+.| .|.|+.|... +..+ .
T Consensus 24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~--~~~g~~~~~~-----------------------~~~l~~~ 78 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE--TRTGRALKAT-----------------------ADLLEDA 78 (328)
T ss_dssp CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC--CSHHHHHHHH-----------------------HHHHHHH
T ss_pred cCchHHHHHHHHHHhccCCchhhhhhhccccccccccc--ccCCcchhhh-----------------------HHHHhcc
Confidence 44578899999999884 5544456783 2 2455 6999999421 0000 1
Q ss_pred CCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEE
Q 004822 104 RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (728)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 183 (728)
..++++.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 1234444444444444 34444444455555555555544 44444444555555555555544 344445555555555
Q ss_pred EccCcccccccccccC---------CCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCc
Q 004822 184 HMNNNSISGQIPPELS---------RLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLL 254 (728)
Q Consensus 184 ~L~~N~l~~~~p~~~~---------~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~ 254 (728)
++++|.+.+.+|..+. .+++|++|++++|+++ .+|..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~ 232 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLE 232 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCC
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCC
Confidence 5555444444444332 3455555555555554 444445555555555555555542 344444444444
Q ss_pred EEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccC
Q 004822 255 KLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSL 333 (728)
Q Consensus 255 ~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 333 (728)
+|++++|.+.+..| .+..++ +|+.|+|++|.+.+.+|..+..+++|+.|+|++|++
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~-----------------------~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRA-----------------------PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCC-----------------------CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EEECcCCcchhhhHHHhcCCC-----------------------CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 44444444444443 344444 455555555555555555666666666666666666
Q ss_pred cccCCcchhhhccCCCCCCcEEECcCCcCCCc
Q 004822 334 SGSIPSSIWQSRTLNATETFILDFQNNNLTNI 365 (728)
Q Consensus 334 ~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~ 365 (728)
.+.+|..+. .+++|+.+++..|.+..+
T Consensus 290 ~~~iP~~l~-----~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 290 LSRLPSLIA-----QLPANCIILVPPHLQAQL 316 (328)
T ss_dssp CCCCCGGGG-----GSCTTCEEECCGGGSCC-
T ss_pred hhhccHHHh-----hccCceEEeCCHHHHHHH
Confidence 666666666 556666666666655544
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.6e-30 Score=297.21 Aligned_cols=289 Identities=17% Similarity=0.204 Sum_probs=230.0
Q ss_pred ceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEee
Q 004822 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (728)
Q Consensus 83 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 162 (728)
..+.++++++++++ +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|+.|.++++|++|+|+
T Consensus 32 ~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 34889999999986 676664 899999999999998888899999999999999999999999999999999999999
Q ss_pred ccCCCCCCcHhhhccCCCCEEEccCcccccc-cccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCC--cEEEcccccC-
Q 004822 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQ-IPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKL--LILQLDNNNF- 238 (728)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L--~~L~L~~N~l- 238 (728)
+|+++. +|.. .+++|++|++++|.+.+. +|..|+++++|++|++++|++++. .+..+++| +.|++++|.+
T Consensus 109 ~N~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNRLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSCCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred CCcCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 999994 5555 899999999999999874 468999999999999999999853 45555555 8888888887
Q ss_pred -CCCCCcccccCCC------------------------------------------------------------------
Q 004822 239 -EGTTIPASYSNMS------------------------------------------------------------------ 251 (728)
Q Consensus 239 -~~~~~p~~~~~l~------------------------------------------------------------------ 251 (728)
++ ..|..+..+.
T Consensus 183 ~~~-~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 183 IKG-GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCS-SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred ccc-cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 54 3444443322
Q ss_pred ---------------CCcEEEccCCcCccCCC-CC---------------------------------------------
Q 004822 252 ---------------KLLKLSLRNCSLQGPMP-DL--------------------------------------------- 270 (728)
Q Consensus 252 ---------------~L~~L~L~~n~l~~~~~-~l--------------------------------------------- 270 (728)
+|++|++++|.+++..| .+
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 56666777777665444 22
Q ss_pred --------CCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCc--CchhccCCccCceeecccccCcccCCc
Q 004822 271 --------SRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGT--IPSNFSGLPRLQRLFIANNSLSGSIPS 339 (728)
Q Consensus 271 --------~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~ip~ 339 (728)
..+++|++|++++|.+++.+|..+.. ++|+.|++++|++++. +|..|..+++|+.|++++|++++.+|.
T Consensus 342 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 421 (562)
T 3a79_B 342 PFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD 421 (562)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS
T ss_pred CcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh
Confidence 56788999999999998777766444 7899999999999873 356788899999999999999876776
Q ss_pred chhhhccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCC
Q 004822 340 SIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 385 (728)
Q Consensus 340 ~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~ 385 (728)
..+. .+++|+.|++++|++++..+..-.++++.|++++|.+.
T Consensus 422 ~~~~----~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~ 463 (562)
T 3a79_B 422 RTCA----WAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM 463 (562)
T ss_dssp CCCC----CCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC
T ss_pred hhhc----CcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc
Confidence 5332 56788888888888876543221267888888888776
No 34
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=2.2e-30 Score=298.90 Aligned_cols=319 Identities=20% Similarity=0.198 Sum_probs=251.8
Q ss_pred CCCCCC--cceEEcCCCC---CCC-CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcE
Q 004822 61 DPCTSN--WTGVLCFNTT---MDD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (728)
Q Consensus 61 ~~C~~~--w~gv~C~~~~---~~~-~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 134 (728)
+||.+. -..+.|.+.. ++. -..+++.|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++
T Consensus 5 ~~c~~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~ 84 (606)
T 3vq2_A 5 NPCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84 (606)
T ss_dssp -CCEEEETTTEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCceecCCCCceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCE
Confidence 456432 2358886543 222 2367999999999999988889999999999999999999988999999999999
Q ss_pred EeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCccccc-ccccccCCCCCCcEEECcCCC
Q 004822 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG-QIPPELSRLPSLVHMLLDNNN 213 (728)
Q Consensus 135 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~ 213 (728)
|+|++|.+++..|+.|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+ .+|..|+++++|++|++++|+
T Consensus 85 L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 85 LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp EECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred eECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 9999999998889999999999999999999998888899999999999999999986 569999999999999999999
Q ss_pred CCCCCCcCCCCCC---------------------------CCcEEEccc-------------------------------
Q 004822 214 LTGYLPPELSELP---------------------------KLLILQLDN------------------------------- 235 (728)
Q Consensus 214 l~~~~~~~l~~l~---------------------------~L~~L~L~~------------------------------- 235 (728)
+++..+..+..++ +|+.|++++
T Consensus 165 l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 244 (606)
T 3vq2_A 165 IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244 (606)
T ss_dssp CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS
T ss_pred ceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccC
Confidence 8876555433222 222333332
Q ss_pred ------------------------------------------------------------------------ccCCCCCC
Q 004822 236 ------------------------------------------------------------------------NNFEGTTI 243 (728)
Q Consensus 236 ------------------------------------------------------------------------N~l~~~~~ 243 (728)
|.+. .+
T Consensus 245 ~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~--~l 322 (606)
T 3vq2_A 245 RNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK--QF 322 (606)
T ss_dssp CCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS--SC
T ss_pred CcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc--cc
Confidence 2221 12
Q ss_pred cc--------------------cccCCCCCcEEEccCCcCccCC--C-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCc
Q 004822 244 PA--------------------SYSNMSKLLKLSLRNCSLQGPM--P-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNI 299 (728)
Q Consensus 244 p~--------------------~~~~l~~L~~L~L~~n~l~~~~--~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L 299 (728)
|. .+..+++|++|++++|.+++.. + .+..+++|++|++++|.+++ +|..+.. ++|
T Consensus 323 p~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L 401 (606)
T 3vq2_A 323 PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEEL 401 (606)
T ss_dssp CCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTC
T ss_pred ccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCC
Confidence 21 1234455666666666666542 3 56677889999999999884 5544333 789
Q ss_pred cEEEccCCCCCCcCc-hhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCC--cCCCC-CCCCce
Q 004822 300 TTIKLSNNKLTGTIP-SNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTN--ISGSF-NIPPNV 375 (728)
Q Consensus 300 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~--~~~~~-~~~~l~ 375 (728)
+.|++++|++++..| ..+..+++|+.|++++|++++..|..+. .+++|+.|++++|++++ ++..+ .+++++
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 476 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL-----GLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT-----TCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc-----CCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence 999999999998877 6888999999999999999988888887 77889999999999987 34444 578899
Q ss_pred EEEcCCCcCCCC
Q 004822 376 TVRLRGNPFCLN 387 (728)
Q Consensus 376 ~l~l~~N~~~~~ 387 (728)
.|++++|.+.+.
T Consensus 477 ~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 477 FLDLSKCQLEQI 488 (606)
T ss_dssp EEECTTSCCCEE
T ss_pred EEECCCCcCCcc
Confidence 999999988643
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.2e-30 Score=274.49 Aligned_cols=282 Identities=21% Similarity=0.309 Sum_probs=199.6
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+++|+.|++++|.+++..+ +..+++|++|++++|.+.. +| .|.++++|++|++++|.+++. +. +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEE
Confidence 4567777787777765322 7777778888888777774 33 477777788888877777744 32 77777788888
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
+++|.....++. +..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 139 l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 213 (347)
T 4fmz_A 139 LGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213 (347)
T ss_dssp CTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred CCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC
Confidence 877765544433 7777778888888877765443 6677788888888887774332 6777788888888887764
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCC
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGL 320 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 320 (728)
.+. +..+++|++|++++|++++..+ +..+++|++|++++|.+++ ++.....++|+.|++++|++++. ..+..+
T Consensus 214 --~~~-~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 286 (347)
T 4fmz_A 214 --ITP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISDI--SVLNNL 286 (347)
T ss_dssp --CGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred --Cch-hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCCC--hhhcCC
Confidence 222 6777788888888888776555 6777888888888887774 33322236788888888888764 457777
Q ss_pred ccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCC
Q 004822 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 385 (728)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~ 385 (728)
++|+.|++++|++++..|..+. .+++|+.|++++|+++++++...+++++.|++++|++.
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIG-----GLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHH-----TCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCCcChhHhh-----ccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 8888888888888777777666 66778888888888887766445777788888888763
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=269.59 Aligned_cols=290 Identities=21% Similarity=0.317 Sum_probs=236.3
Q ss_pred ceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEee
Q 004822 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (728)
Q Consensus 83 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 162 (728)
+++.++++++.++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7899999999887 4565554 689999999999998888889999999999999999998889999999999999999
Q ss_pred ccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCC--CCCcCCCCCCCCcEEEcccccCCC
Q 004822 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG--YLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
+|.++. +|..+. ++|++|++++|.+.+..+..|..+++|++|++++|+++. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 999984 454443 799999999999998888889999999999999999964 67788899999999999999997
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhcc
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFS 318 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~ 318 (728)
.+|..+. ++|++|++++|++++..+ .+..+++|+.|++++|.+++..+..+.. ++|+.|++++|+++ .+|..+.
T Consensus 185 -~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 -TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 4565543 789999999999998876 7889999999999999998655544333 78999999999998 6788888
Q ss_pred CCccCceeecccccCcccCCcchhhhc-cCCCCCCcEEECcCCcCCC--cCC-CC-CCCCceEEEcCCCc
Q 004822 319 GLPRLQRLFIANNSLSGSIPSSIWQSR-TLNATETFILDFQNNNLTN--ISG-SF-NIPPNVTVRLRGNP 383 (728)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~ip~~~~~~~-~l~~~~L~~L~l~~N~l~~--~~~-~~-~~~~l~~l~l~~N~ 383 (728)
.+++|++|++++|+|++..+..+.... ......+..|++++|.+.. +++ .+ .+..++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999999999999865555554221 1124678888999998874 322 22 46777888888774
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.8e-30 Score=271.99 Aligned_cols=287 Identities=24% Similarity=0.320 Sum_probs=241.7
Q ss_pred CCCCCCcceEEcCCCCC---CC-CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEe
Q 004822 61 DPCTSNWTGVLCFNTTM---DD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLL 136 (728)
Q Consensus 61 ~~C~~~w~gv~C~~~~~---~~-~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 136 (728)
..|.|.|..+.|.+..+ +. -..+++.|++++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+
T Consensus 29 ~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 29 FGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp SSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred CCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 45666899999975432 22 245799999999999988888999999999999999999988899999999999999
Q ss_pred ccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccc--cccccccCCCCCCcEEECcCCCC
Q 004822 137 LNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSIS--GQIPPELSRLPSLVHMLLDNNNL 214 (728)
Q Consensus 137 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l 214 (728)
+++|.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+. +..+..+..+ +|++|++++|++
T Consensus 109 L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 9999998 5666555 89999999999999888888999999999999999996 3667788888 999999999999
Q ss_pred CCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCC
Q 004822 215 TGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPG 293 (728)
Q Consensus 215 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~ 293 (728)
++ +|..+. ++|++|++++|.+++ ..+..+..+++|+.|++++|++++..+ .+..+++|+.|++++|+++ .+|..
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~ 259 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQA-IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCC-CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTT
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChh
Confidence 85 565554 789999999999986 566789999999999999999998877 6888999999999999999 78876
Q ss_pred Ccc-CCccEEEccCCCCCCcCchhccCC------ccCceeecccccCc--ccCCcchhhhccCCCCCCcEEECcCCc
Q 004822 294 RLS-LNITTIKLSNNKLTGTIPSNFSGL------PRLQRLFIANNSLS--GSIPSSIWQSRTLNATETFILDFQNNN 361 (728)
Q Consensus 294 ~~~-~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~L~~N~l~--~~ip~~~~~~~~l~~~~L~~L~l~~N~ 361 (728)
+.. ++|+.|++++|++++..+..|..+ ++|+.|++++|+++ +..|..+. .+++|+.+++++|+
T Consensus 260 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~-----~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR-----CVTDRLAIQFGNYK 331 (332)
T ss_dssp GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGT-----TBCCSTTEEC----
T ss_pred hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccc-----ccchhhhhhccccc
Confidence 444 789999999999998877777653 67899999999987 45555565 67889999999885
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.4e-29 Score=275.86 Aligned_cols=269 Identities=19% Similarity=0.227 Sum_probs=224.5
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+++|+.|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.++...+..|.++++|++|+
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 147 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 147 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEE
Confidence 57899999999999988888999999999999999999988888899999999999999999965556679999999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCC----------------CCCcEEECcCCCCCCCCCcCCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRL----------------PSLVHMLLDNNNLTGYLPPELSE 224 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l----------------~~L~~L~L~~N~l~~~~~~~l~~ 224 (728)
+++|.+++..|..|.++++|++|++++|.+++.....+..+ ++|++|++++|+++.. |. ..
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~-~~--~~ 224 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVV-RG--PV 224 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEE-EC--CC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeec-cc--cc
Confidence 99999999889999999999999999999986533222221 3345555555555532 22 22
Q ss_pred CCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEE
Q 004822 225 LPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTI 302 (728)
Q Consensus 225 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L 302 (728)
.++|+.|++++|.+++ ...+..+++|++|++++|.+++..| .+..+++|+.|++++|++++ +|..... ++|+.|
T Consensus 225 ~~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L 300 (390)
T 3o6n_A 225 NVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 300 (390)
T ss_dssp CSSCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEE
T ss_pred cccccEEECCCCCCcc---cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEE
Confidence 4689999999999975 2578999999999999999999877 78999999999999999995 5544333 899999
Q ss_pred EccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCc
Q 004822 303 KLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 365 (728)
Q Consensus 303 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~ 365 (728)
++++|+++ .+|..+..+++|+.|++++|+++. +| +. .+++|+.|++++|.++..
T Consensus 301 ~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~-----~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LS-----THHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CC-----TTCCCSEEECCSSCEEHH
T ss_pred ECCCCcce-ecCccccccCcCCEEECCCCccce-eC--ch-----hhccCCEEEcCCCCccch
Confidence 99999999 567778889999999999999984 44 33 568999999999999863
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=4.4e-30 Score=275.86 Aligned_cols=246 Identities=17% Similarity=0.205 Sum_probs=167.6
Q ss_pred CCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCC
Q 004822 90 LNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGS 169 (728)
Q Consensus 90 ~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 169 (728)
++++++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..|..|.++++|++|+|++|++++.
T Consensus 39 ~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 39 SSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 445554 3454443 4788888888888876666788888888888888888877777788888888888888888876
Q ss_pred CcHhhhccCCCCEEEccCcccccccc-cccCCCCCCcEEECcCC-CCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccc
Q 004822 170 LPKSFANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNN-NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASY 247 (728)
Q Consensus 170 ~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~ 247 (728)
.+..|.++++|++|++++|++....+ ..+..+++|++|++++| .++...+..+..+++|++|++++|.+++ ..|..+
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l 194 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEPKSL 194 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCHHHH
Confidence 66668888888888888888875444 46777888888888887 4666666777778888888888888775 556777
Q ss_pred cCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCc----cCCccEEEccCCCCCC----cCchhcc
Q 004822 248 SNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRL----SLNITTIKLSNNKLTG----TIPSNFS 318 (728)
Q Consensus 248 ~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~----~~~L~~L~Ls~N~l~~----~~p~~~~ 318 (728)
..+++|++|++++|.++.... .+..+++|+.|++++|.+++..+.... ...++.+++++|.+++ .+|..+.
T Consensus 195 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred hccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHh
Confidence 777777778777777754433 234467777777777777643332211 1345555555555543 2444455
Q ss_pred CCccCceeecccccCcccCCcc
Q 004822 319 GLPRLQRLFIANNSLSGSIPSS 340 (728)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~ip~~ 340 (728)
.+++|+.|++++|+++ .+|..
T Consensus 275 ~l~~L~~L~Ls~N~l~-~i~~~ 295 (353)
T 2z80_A 275 QISGLLELEFSRNQLK-SVPDG 295 (353)
T ss_dssp TCTTCCEEECCSSCCC-CCCTT
T ss_pred cccCCCEEECCCCCCC-ccCHH
Confidence 5555555555555555 44443
No 40
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=6.7e-29 Score=276.96 Aligned_cols=280 Identities=25% Similarity=0.328 Sum_probs=207.0
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+.+|+.|++++|.+++..+ ++++++|++|++++|.+.+..| +.++++|++|++++|.+++..+ +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEE
Confidence 5689999999999886543 8899999999999999986544 8899999999999999886533 88899999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
+++|.+.+. + .+..+++|++|+++ |.+.+.. .+..+++|++|++++|++++. ..+..+++|++|++++|.+++
T Consensus 141 l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 141 LSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp EEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred CCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccc
Confidence 999988864 3 47777778877775 4444332 277788888888888887743 346777888888888888765
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCC
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGL 320 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 320 (728)
..| ++.+++|+.|++++|++++. +.+..+++|+.|++++|.+++..| ....++|+.|++++|++++..+ +..+
T Consensus 214 -~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 214 -ITP--LGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp -CGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred -ccc--ccccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 222 66677888888888877753 456677788888888888775444 2222678888888888876544 7777
Q ss_pred ccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCCCC
Q 004822 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLN 387 (728)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~~~ 387 (728)
++|+.|++++|++++..| +. .+++|+.|++++|+++++++...+++++.|++++|++.+.
T Consensus 287 ~~L~~L~L~~n~l~~~~~--~~-----~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 346 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--IS-----NLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--GG-----GCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CccCeEEcCCCcccCchh--hc-----CCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc
Confidence 888888888888775433 33 5677788888888887776544567777788888777643
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=9.3e-29 Score=275.83 Aligned_cols=282 Identities=25% Similarity=0.334 Sum_probs=200.4
Q ss_pred CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 004822 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (728)
Q Consensus 80 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 159 (728)
.+.+|+.|++++|.+++..+ ++++++|++|++++|.+.+.. . +.++++|++|++++|.+++. + .+..+++|++|
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L 161 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID-P-LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQL 161 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEE
T ss_pred ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCC-h-hhccCCcccEe
Confidence 46789999999999987654 999999999999999999653 3 89999999999999999853 3 47777788877
Q ss_pred EeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCC
Q 004822 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (728)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 239 (728)
+++ |.+.+..+ +.++++|++|++++|.+.+. ..+..+++|++|++++|++++..+ ++.+++|+.|++++|.++
T Consensus 162 ~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 162 SFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp EEE-ESCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ecC-CcccCchh--hccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 775 44544332 77777777777777777643 246677777777777777775544 566777777777777776
Q ss_pred CCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccC
Q 004822 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSG 319 (728)
Q Consensus 240 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 319 (728)
+ + ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++..+ ....++|+.|++++|++++..+ +..
T Consensus 235 ~--~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 235 D--I-GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp C--C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred c--c-hhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcC
Confidence 4 2 346667777777777777776554 6667777777777777774333 2222677777777777776543 667
Q ss_pred CccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCCCCC
Q 004822 320 LPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCLNT 388 (728)
Q Consensus 320 l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~~~~ 388 (728)
+++|+.|++++|++++..| +. .+++|+.|++++|++++++....+++++.|++++|++.+..
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~-----~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VS-----SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT 369 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GG-----GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG
T ss_pred CCCCCEEECcCCcCCCchh--hc-----cCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccc
Confidence 7777777777777776544 33 55677777777777777643335666777777777765543
No 42
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=6.9e-30 Score=268.65 Aligned_cols=249 Identities=18% Similarity=0.213 Sum_probs=136.9
Q ss_pred CCCCCCcceEEcCCCCC---CC-CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccC--CCccccCCCCCcE
Q 004822 61 DPCTSNWTGVLCFNTTM---DD-GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGS--IPKEIGNIKSLEL 134 (728)
Q Consensus 61 ~~C~~~w~gv~C~~~~~---~~-~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L~~ 134 (728)
++|.|.|.++.|.+..+ +. -..+++.|++++|+++...+..|.++++|++|+|++|.+... .|..+..+++|++
T Consensus 3 ~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~ 82 (306)
T 2z66_A 3 SRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKY 82 (306)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCE
T ss_pred CCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCE
Confidence 46778899999975432 11 123566666666666533333355666666666666665522 2444555566666
Q ss_pred EeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCc-HhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCC
Q 004822 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLP-KSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNN 213 (728)
Q Consensus 135 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 213 (728)
|++++|.++ .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|+
T Consensus 83 L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 83 LDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp EECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred EECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 666666655 344445556666666666665554433 445555566666666665555555555555556666665555
Q ss_pred CCC-CCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCC
Q 004822 214 LTG-YLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIP 291 (728)
Q Consensus 214 l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip 291 (728)
+++ ..|..+..+++|++|++++|.+++ ..|..+..+++|+.|++++|++++..+ .+..+++|+.|++++|++++..|
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCC-cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 554 345555555555555555555554 334455555555555555555555444 34555555555555555554444
Q ss_pred CCCcc--CCccEEEccCCCCCC
Q 004822 292 PGRLS--LNITTIKLSNNKLTG 311 (728)
Q Consensus 292 ~~~~~--~~L~~L~Ls~N~l~~ 311 (728)
..+.. .+|+.|+|++|.+++
T Consensus 241 ~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SSCCCCCTTCCEEECTTCCEEC
T ss_pred HHHHhhhccCCEEEccCCCeec
Confidence 33222 245555555555543
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4e-28 Score=269.17 Aligned_cols=209 Identities=22% Similarity=0.193 Sum_probs=105.7
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
.+|+.|++++|++++. | .++.+++|++|+|++|++++. | ++.+++|++|++++|.+++. + ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 3555555555555543 2 455555555555555555542 2 55555555555555555543 2 555555555555
Q ss_pred eccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCC
Q 004822 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 241 (728)
++|++++. | +.++++|++|++++|++++. .++.+++|++|++++|+..+.+ .+..+++|++|++++|++++
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~- 184 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE- 184 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-
Confidence 55555542 2 55555555555555555542 2445555555555555333333 24445555555555555543
Q ss_pred CCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCc
Q 004822 242 TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIP 314 (728)
Q Consensus 242 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p 314 (728)
+| +..+++|+.|++++|++++. .+..+++|+.|++++|++++ +| ....++|+.|++++|++++..+
T Consensus 185 -l~--l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 185 -LD--VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp -CC--CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSCCCC
T ss_pred -ec--cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCCcCH
Confidence 22 44455555555555555443 24444555555555555553 33 1111445555555555554433
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1e-28 Score=284.06 Aligned_cols=266 Identities=21% Similarity=0.248 Sum_probs=227.1
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+++|+.|++++|.+++..+..|+.+++|++|+|++|.+.+..|..|+++++|++|+|++|.+++..+..|.++++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 57899999999999998888999999999999999999998888899999999999999999977677789999999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEE-------------------ECcCCCCCCCCCcC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHM-------------------LLDNNNLTGYLPPE 221 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L-------------------~L~~N~l~~~~~~~ 221 (728)
|++|.+++..|..|.++++|++|+|++|.+.+... ..+++|++| ++++|.++...+.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~- 229 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP- 229 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG---GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS-
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh---hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc-
Confidence 99999999999999999999999999999987543 334445554 4555544432221
Q ss_pred CCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCc-cCCc
Q 004822 222 LSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRL-SLNI 299 (728)
Q Consensus 222 l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~-~~~L 299 (728)
..++|+.|++++|.+++ +..+..+++|+.|+|++|.+++..| .+..+++|+.|+|++|.+++ +|.... .++|
T Consensus 230 --~~~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 230 --VNVELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp --CCSCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred --cCCCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC
Confidence 13579999999999975 4678999999999999999999877 78999999999999999996 555443 3899
Q ss_pred cEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCc
Q 004822 300 TTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 365 (728)
Q Consensus 300 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~ 365 (728)
+.|+|++|.++ .+|..+..+++|+.|+|++|++++. | +. .+++|+.|++++|.+++-
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~-----~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LS-----THHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CC-----TTCCCSEEECCSSCEEHH
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hh-----hcCCCCEEEeeCCCCCCh
Confidence 99999999999 5778889999999999999999854 4 22 568999999999999863
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.7e-28 Score=261.19 Aligned_cols=282 Identities=20% Similarity=0.283 Sum_probs=241.4
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+.+++.|+++++.+... +.+..+++|++|++++|++++. |. +..+++|++|++++|.++.. +.+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEE
Confidence 46899999999999753 3589999999999999999954 44 99999999999999999853 4699999999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
+++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++
T Consensus 117 l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 99999996544 8999999999999997665544 48999999999999999986543 8899999999999999975
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCC
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGL 320 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 320 (728)
++. +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. +.....++|+.|++++|++++. ..+..+
T Consensus 192 --~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 192 --ISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDL-SPLANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp --CGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred --ccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCC-cchhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 444 8899999999999999987665 78899999999999999854 4322338999999999999974 578999
Q ss_pred ccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCC-C-CCCCceEEEcCCCcCCCC
Q 004822 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPNVTVRLRGNPFCLN 387 (728)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~-~-~~~~l~~l~l~~N~~~~~ 387 (728)
++|+.|++++|++++. | .+. .+++|+.|++++|++++.++. + .+++++.|++++|++.+.
T Consensus 265 ~~L~~L~l~~n~l~~~-~-~~~-----~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI-S-VLN-----NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp TTCCEEECCSSCCCCC-G-GGG-----GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred CCcCEEEccCCccCCC-h-hhc-----CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 9999999999999963 3 344 679999999999999987643 2 588999999999998754
No 46
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=3.1e-28 Score=269.49 Aligned_cols=226 Identities=22% Similarity=0.259 Sum_probs=157.0
Q ss_pred CCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEc
Q 004822 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (728)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (728)
++++.|+|++|++.+..+..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56777777777777766677777777777777777777666677777777777777777777666667777777777777
Q ss_pred cCcccccccccccCCCCCCcEEECcCC-CCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCc
Q 004822 186 NNNSISGQIPPELSRLPSLVHMLLDNN-NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (728)
Q Consensus 186 ~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 264 (728)
++|.+....+..|..+++|++|++++| .+....+..|..+++|++|++++|.++. +| .+..+++|+.|+|++|+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--IP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--CC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--cc-ccCCCcccCEEECCCCccC
Confidence 777777666666777777777777773 3443344467777777777777777763 44 3666777777777777777
Q ss_pred cCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeecccccCc
Q 004822 265 GPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 334 (728)
Q Consensus 265 ~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 334 (728)
+..+ .+..+++|+.|+|++|++++..+..+.. ++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6655 5667777777777777776444433222 56677777777776666666677777777777777765
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=3.1e-28 Score=270.48 Aligned_cols=226 Identities=20% Similarity=0.252 Sum_probs=136.6
Q ss_pred CCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEc
Q 004822 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (728)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (728)
++|++|+|++|++++..|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45666666666666666666666666666666666666666666666666666666666666555555666666666666
Q ss_pred cCcccccccccccCCCCCCcEEECcC-CCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCc
Q 004822 186 NNNSISGQIPPELSRLPSLVHMLLDN-NNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (728)
Q Consensus 186 ~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 264 (728)
++|.+....+..|..+++|++|++++ |.+....+..|..+++|++|++++|++++ +| .+..+++|+.|+|++|+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-cccccccccEEECcCCcCc
Confidence 66666655555566666666666666 33333333445666666666666666653 23 3555566666666666666
Q ss_pred cCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeecccccCc
Q 004822 265 GPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 334 (728)
Q Consensus 265 ~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 334 (728)
+..+ .+..+++|+.|++++|++++..|..+.. ++|+.|+|++|++++..+..|..+++|+.|+|++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 5554 4555666666666666665433333222 45566666666666555555666667777777777665
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=265.84 Aligned_cols=270 Identities=20% Similarity=0.234 Sum_probs=232.5
Q ss_pred EEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcc
Q 004822 110 ILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS 189 (728)
Q Consensus 110 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 189 (728)
..+++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 35 ~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 3577888888 6777665 589999999999998777799999999999999999999889999999999999999999
Q ss_pred cccccccccCCCCCCcEEECcCCCCCCCCC-cCCCCCCCCcEEEccccc-CCCCCCcccccCCCCCcEEEccCCcCccCC
Q 004822 190 ISGQIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNNN-FEGTTIPASYSNMSKLLKLSLRNCSLQGPM 267 (728)
Q Consensus 190 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 267 (728)
+++..+..|..+++|++|++++|++++..+ ..+..+++|++|++++|+ ++. ..+..+.++++|++|++++|.+++..
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 190 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQSYE 190 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCCEEC
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcCccC
Confidence 997777679999999999999999996544 478999999999999995 654 45678999999999999999999987
Q ss_pred C-CCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccCCCCCCcCchhcc---CCccCceeecccccCcc----cC
Q 004822 268 P-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPSNFS---GLPRLQRLFIANNSLSG----SI 337 (728)
Q Consensus 268 ~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~----~i 337 (728)
| .+..+++|++|++++|.++ .+|...+. ++|+.|++++|++++..+..+. ....++.+++++|.+++ .+
T Consensus 191 ~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l 269 (353)
T 2z80_A 191 PKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269 (353)
T ss_dssp TTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred HHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence 7 7999999999999999986 55554332 7999999999999987665543 46778899999999886 46
Q ss_pred CcchhhhccCCCCCCcEEECcCCcCCCcCCCC--CCCCceEEEcCCCcCCCCCC
Q 004822 338 PSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (728)
Q Consensus 338 p~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~--~~~~l~~l~l~~N~~~~~~~ 389 (728)
|..+. .+++|+.|++++|+++.++... .+++++.|++++|++.|+++
T Consensus 270 ~~~l~-----~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 270 MKLLN-----QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHH-----TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HHHHh-----cccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 77776 7899999999999999998764 58899999999999998874
No 49
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3.4e-30 Score=271.76 Aligned_cols=246 Identities=22% Similarity=0.251 Sum_probs=198.2
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCC-ccCCCcccc-------CCCCCcEEeccCCcCCCcCCccC--
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKI-SGSIPKEIG-------NIKSLELLLLNGNELTGSLPEEL-- 150 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~-- 150 (728)
..+++.|++++|.+ .+|..+... |+.|+|++|.+ ...+|..+. ++++|++|+|++|++++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 35788888899988 677777654 88889999998 456676665 78999999999999998888876
Q ss_pred CCCCCCCEEEeeccCCCCCCcHhhhcc-----CCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCC--CCcCC-
Q 004822 151 GYLPKLDRIQIDQNYISGSLPKSFANL-----NKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY--LPPEL- 222 (728)
Q Consensus 151 ~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~l- 222 (728)
..+++|++|+|++|.+++. |..+..+ ++|++|+|++|++.+..|..|+.+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 8899999999999999987 8888877 8999999999999888888899999999999999987754 23333
Q ss_pred -CCCCCCcEEEcccccCCCC-CCc-ccccCCCCCcEEEccCCcCccCCC--CCCCCCCcCEEEccCCCCcccCCCCCccC
Q 004822 223 -SELPKLLILQLDNNNFEGT-TIP-ASYSNMSKLLKLSLRNCSLQGPMP--DLSRIPNLGYLDLSSNQLNGSIPPGRLSL 297 (728)
Q Consensus 223 -~~l~~L~~L~L~~N~l~~~-~~p-~~~~~l~~L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~ 297 (728)
..+++|++|++++|++++. .++ ..+..+++|++|++++|++++..| .+..+++|++|+|++|+++ .+|.... +
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-~ 274 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-A 274 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-S
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-C
Confidence 7889999999999998731 112 334678889999999999988664 5667788899999999888 7777655 7
Q ss_pred CccEEEccCCCCCCcCchhccCCccCceeecccccCcc
Q 004822 298 NITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 335 (728)
Q Consensus 298 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 335 (728)
+|+.|+|++|+|++. |. +..+++|+.|++++|++++
T Consensus 275 ~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 888888888888866 44 7788888888888888774
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.3e-28 Score=256.23 Aligned_cols=252 Identities=18% Similarity=0.230 Sum_probs=150.3
Q ss_pred eEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeecc
Q 004822 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (728)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 164 (728)
+.++.++++++. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 344444444442 23322 345666666666666555556666666666666666666555666666666666666666
Q ss_pred C-CCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCC
Q 004822 165 Y-ISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTI 243 (728)
Q Consensus 165 ~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 243 (728)
. +....|..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++ ..
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~ 169 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VP 169 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-EC
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc-cC
Confidence 5 555556666666666666666666666556666666666666666666665555556666666666666666653 22
Q ss_pred cccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccCCCCCCcCchhccCC
Q 004822 244 PASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPSNFSGL 320 (728)
Q Consensus 244 p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l 320 (728)
+..+..+++|+.|++++|++++..| .+..+++|+.|++++|.+++ +|...+. ++|+.|++++|++....+.. .-+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~ 247 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW 247 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCEECSGGGH-HHH
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCCccCCCCcH-HHH
Confidence 3346666666666666666666555 56666666666666666663 3322122 56667777777666432211 112
Q ss_pred ccCceeecccccCcccCCcchh
Q 004822 321 PRLQRLFIANNSLSGSIPSSIW 342 (728)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~ 342 (728)
..++.+....|.+.+..|..+.
T Consensus 248 ~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HHHHHCCSEECCCBEEESGGGT
T ss_pred HHHHhcccccCccccCCchHhC
Confidence 3455556667777777776654
No 51
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=3.3e-27 Score=273.37 Aligned_cols=176 Identities=18% Similarity=0.204 Sum_probs=139.2
Q ss_pred CCCCCCCCCCCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCC
Q 004822 52 SKLSNWNRGDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKS 131 (728)
Q Consensus 52 ~~l~~w~~~~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 131 (728)
..+..|+..-|. .|+...|.. .-.+.+=++.+++ .+|+.+. +++++|||++|+|++..|.+|.++++
T Consensus 11 ~~~~~~~~~~p~--~~~~c~~~~--------~~~~~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~ 77 (635)
T 4g8a_A 11 DKLAAANSSIPE--SWEPCVEVV--------PNITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPE 77 (635)
T ss_dssp ----------------CCSEEEE--------TTTEEECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred chhhcccCCCCC--CCCCccccC--------CCCEEECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCC
Confidence 445666655443 254434421 1134556666776 4565553 47999999999999888889999999
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcC
Q 004822 132 LELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDN 211 (728)
Q Consensus 132 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 211 (728)
|++|+|++|+|++..|++|.++++|++|+|++|+|++..+..|.++++|++|+|++|++++..+..|+++++|++|++++
T Consensus 78 L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 157 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc
Confidence 99999999999988888999999999999999999988889999999999999999999988888899999999999999
Q ss_pred CCCCC-CCCcCCCCCCCCcEEEcccccCCC
Q 004822 212 NNLTG-YLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 212 N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
|++++ ..|..++.+++|++|++++|++++
T Consensus 158 N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 158 NLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp SCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CccccCCCchhhccchhhhhhcccCccccc
Confidence 99986 467888999999999999998754
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.3e-28 Score=256.60 Aligned_cols=225 Identities=20% Similarity=0.295 Sum_probs=177.8
Q ss_pred CCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEE
Q 004822 128 NIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHM 207 (728)
Q Consensus 128 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 207 (728)
...+++.|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..+.++++|++|+|++|.+. .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 78888989999999999999999 78889999999999999999998 678889999999999
Q ss_pred ECcCCCCCCCCCcCCCC---------CCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCE
Q 004822 208 LLDNNNLTGYLPPELSE---------LPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGY 278 (728)
Q Consensus 208 ~L~~N~l~~~~~~~l~~---------l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~ 278 (728)
++++|++.+.+|..+.. +++|++|++++|.++ .+|..+..+++|++|++++|++++.++.+..+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l----- 228 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHL----- 228 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC-----
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccC-----
Confidence 99998888888887654 566666666666655 45555555555555555555555433333333
Q ss_pred EEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECc
Q 004822 279 LDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQ 358 (728)
Q Consensus 279 L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~ 358 (728)
++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+. .+++|+.|+++
T Consensus 229 ------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~-----~l~~L~~L~L~ 285 (328)
T 4fcg_A 229 ------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH-----RLTQLEKLDLR 285 (328)
T ss_dssp ------------------TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG-----GCTTCCEEECT
T ss_pred ------------------CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh-----cCCCCCEEeCC
Confidence 4556666666666667777889999999999999999999999988 78999999999
Q ss_pred CCcCCCcCC-CC-CCCCceEEEcCCCcCC
Q 004822 359 NNNLTNISG-SF-NIPPNVTVRLRGNPFC 385 (728)
Q Consensus 359 ~N~l~~~~~-~~-~~~~l~~l~l~~N~~~ 385 (728)
+|++.+..| .+ .+++++.+.+..|.+.
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 999887554 44 5888999998877653
No 53
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=1.4e-27 Score=264.82 Aligned_cols=280 Identities=18% Similarity=0.154 Sum_probs=236.5
Q ss_pred CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 004822 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (728)
Q Consensus 80 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 159 (728)
.+.+|+.|++++|++++. + ++.+++|++|++++|++++. | ++++++|++|++++|++++. | ++.+++|++|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEE
Confidence 357899999999999985 3 89999999999999999975 3 89999999999999999974 4 8999999999
Q ss_pred EeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCC
Q 004822 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (728)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 239 (728)
++++|++++. + +.++++|++|++++|...+.+ .+..+++|++|++++|++++ +| +..+++|+.|++++|+++
T Consensus 133 ~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 133 NCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred ECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence 9999999985 3 889999999999999766555 58899999999999999997 44 889999999999999998
Q ss_pred CCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc---------CCccEEEccCCCCC
Q 004822 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS---------LNITTIKLSNNKLT 310 (728)
Q Consensus 240 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~---------~~L~~L~Ls~N~l~ 310 (728)
+. .+..+++|+.|++++|++++. | +..+++|+.|++++|++++. |...+. .+|+.|++++|++.
T Consensus 205 ~~----~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L~~L~l~~N~l~~~-~~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 205 KL----DLNQNIQLTFLDCSSNKLTEI-D-VTPLTQLTYFDCSVNPLTEL-DVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp CC----CCTTCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred ee----ccccCCCCCEEECcCCccccc-C-ccccCCCCEEEeeCCcCCCc-CHHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 63 388899999999999999985 4 88899999999999999964 432222 25667777777777
Q ss_pred CcCchhccCCccCceeecccccCcccCCcchhhhccC---CCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCCC
Q 004822 311 GTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTL---NATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCL 386 (728)
Q Consensus 311 ~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l---~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~~ 386 (728)
+.+| ++.+++|+.|++++|++.+.+|........+ ..++|+.|++++|+|++++ -..+++++.|++++|++.+
T Consensus 278 ~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 278 IYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCSEEECCSSCCCB
T ss_pred Cccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-cccCCcCcEEECCCCCCCC
Confidence 7666 5688999999999999988888644333222 4578999999999999974 3357889999999999975
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=2.2e-27 Score=263.64 Aligned_cols=250 Identities=19% Similarity=0.292 Sum_probs=180.0
Q ss_pred CCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEcc
Q 004822 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (728)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 186 (728)
....++.+++.++ .+|..+. ++|++|+|++|++++..|+.|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888877 5666554 678888888888887777788888888888888888877777777777777777777
Q ss_pred CcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCc-ccccCCCCCcEEEccCCcCcc
Q 004822 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIP-ASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 187 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p-~~~~~l~~L~~L~L~~n~l~~ 265 (728)
+|.++...+..|..+++|++|+|++|+++...+..|..+++|+.|++++|+..+ .++ ..+.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~-~i~~~~~~~l~-------------- 196 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLF-------------- 196 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-EECTTTTTTCT--------------
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-ccChhhccCCC--------------
Confidence 777776666667777777777777777776555566667777777776643322 222 2344444
Q ss_pred CCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhc
Q 004822 266 PMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSR 345 (728)
Q Consensus 266 ~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~ 345 (728)
+|++|++++|+++ .+|......+|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.
T Consensus 197 ---------~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--- 263 (452)
T 3zyi_A 197 ---------NLKYLNLGMCNIK-DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD--- 263 (452)
T ss_dssp ---------TCCEEECTTSCCS-SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT---
T ss_pred ---------CCCEEECCCCccc-ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc---
Confidence 4555555555554 233322225677777777777777778888888888888888888877777776
Q ss_pred cCCCCCCcEEECcCCcCCCcCCCC--CCCCceEEEcCCCcCCCCCC
Q 004822 346 TLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (728)
Q Consensus 346 ~l~~~~L~~L~l~~N~l~~~~~~~--~~~~l~~l~l~~N~~~~~~~ 389 (728)
.+++|+.|+|++|+|+++++.. .+++++.|+|++|+|.|+|.
T Consensus 264 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 264 --GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp --TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred --CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 6788888888888888887643 47889999999999999874
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.2e-27 Score=262.70 Aligned_cols=251 Identities=20% Similarity=0.311 Sum_probs=185.2
Q ss_pred CCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEcc
Q 004822 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (728)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 186 (728)
..+.++.+++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.++++.+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678899998888 6777664 688899999999988888888889999999999998888888888888888888888
Q ss_pred CcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccC
Q 004822 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP 266 (728)
Q Consensus 187 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 266 (728)
+|+++...+..|..+++|++|++++|+++...+..|..+++|++|++++|+..+...+..|.++++|++|++++|+++..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 88888766667788888888888888887666667777777777777774433212223455555555555555555522
Q ss_pred CCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhcc
Q 004822 267 MPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRT 346 (728)
Q Consensus 267 ~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~ 346 (728)
|.+..+ .+|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..+.
T Consensus 201 -~~~~~l-----------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---- 252 (440)
T 3zyj_A 201 -PNLTPL-----------------------IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD---- 252 (440)
T ss_dssp -CCCTTC-----------------------SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST----
T ss_pred -cccCCC-----------------------cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhc----
Confidence 233333 4566666666666666667777777888888888888766666666
Q ss_pred CCCCCCcEEECcCCcCCCcCCCC--CCCCceEEEcCCCcCCCCCC
Q 004822 347 LNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (728)
Q Consensus 347 l~~~~L~~L~l~~N~l~~~~~~~--~~~~l~~l~l~~N~~~~~~~ 389 (728)
.+++|+.|+|++|+++++++.. .+++++.|+|++|+|.|+|.
T Consensus 253 -~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 253 -NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp -TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred -CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 6677888888888888777543 46788899999999999874
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=3.3e-27 Score=248.18 Aligned_cols=229 Identities=21% Similarity=0.235 Sum_probs=137.1
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCC--CcHhhhccCCCCEEEcc
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGS--LPKSFANLNKTRHFHMN 186 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~ 186 (728)
+.++++++.++ .+|..+. ++|++|+|++|+++...+..|.++++|++|+|++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 34555555555 3444332 4666666666666644444466666777777777666532 35666667777777777
Q ss_pred CcccccccccccCCCCCCcEEECcCCCCCCCCC-cCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCcc
Q 004822 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 187 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 265 (728)
+|.+.. +|..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++ ..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEEECCCCcccc
Confidence 777763 45556677777777777777765444 456667777777777777765 455566666667777777666665
Q ss_pred -CCC-CCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchh
Q 004822 266 -PMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIW 342 (728)
Q Consensus 266 -~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 342 (728)
..| .+..+++|++|++++|++++..|..+.. ++|+.|++++|++++..+..+..+++|+.|++++|++++..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 223 5566666666666666665433333222 4555555555555554444555555555555555555554444443
No 57
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=6.8e-26 Score=251.00 Aligned_cols=261 Identities=25% Similarity=0.267 Sum_probs=158.6
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
..+++.|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ +| .|+++++|++|+
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 3567777777777776 4432 3667777777777764 2221 1567777777777774 55 477777777777
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
+++|++++ +|.. ..+|++|++++|.+.+ +| .++.+++|++|++++|++++ +|... ++|++|++++|.++
T Consensus 160 l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS-
T ss_pred CCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC-
Confidence 77777765 3432 2467777777777765 34 46777777777777777764 33322 46777777777775
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCC
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGL 320 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l 320 (728)
.+|. +..+++|++|++++|++++.+. .+++|+.|++++|++++ +|.. ..+|+.|++++|++++.. . -.
T Consensus 229 -~lp~-~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l~-~---~~ 296 (454)
T 1jl5_A 229 -ELPE-LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGLS-E---LP 296 (454)
T ss_dssp -SCCC-CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEES-C---CC
T ss_pred -cccc-cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCccc-C---cC
Confidence 3553 6677777777777777765332 23567777777777663 4442 256677777777666521 1 01
Q ss_pred ccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCC
Q 004822 321 PRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFC 385 (728)
Q Consensus 321 ~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~ 385 (728)
++|+.|++++|++++ ++. -.++|+.|++++|++++++.. +++++.|++++|.+.
T Consensus 297 ~~L~~L~l~~N~l~~-i~~--------~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 297 PNLYYLNASSNEIRS-LCD--------LPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLA 350 (454)
T ss_dssp TTCCEEECCSSCCSE-ECC--------CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCS
T ss_pred CcCCEEECcCCcCCc-ccC--------CcCcCCEEECCCCcccccccc--CCcCCEEECCCCccc
Confidence 456666666666653 221 013556666666666665433 355666666666654
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.8e-27 Score=262.10 Aligned_cols=268 Identities=25% Similarity=0.346 Sum_probs=206.5
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCC-------------cEEeccCCcCCCcCCc
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSL-------------ELLLLNGNELTGSLPE 148 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~N~l~~~~p~ 148 (728)
.+++.|++++|++ +.+|++|+++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5799999999999 8999999999999999999999999999999998875 999999999985 454
Q ss_pred cCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCC
Q 004822 149 ELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKL 228 (728)
Q Consensus 149 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 228 (728)
. .++|++|++++|.+++ +|.. +++|++|++++|.+.+. +.. .++|++|++++|++++ +| +++.+++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 2 4789999999999997 5643 48999999999999853 221 2689999999999996 67 59999999
Q ss_pred cEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCC
Q 004822 229 LILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNK 308 (728)
Q Consensus 229 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~ 308 (728)
++|++++|++++ +|.. ..+|++|++++|++++. |.+..+++|+.|++++|++++ +|.. ..+|+.|++++|+
T Consensus 156 ~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~~-l~~~--~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 156 KIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK-LPDL--PLSLESIVAGNNI 226 (454)
T ss_dssp CEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CCCC--CTTCCEEECCSSC
T ss_pred CEEECCCCcCcc--cCCC---cccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCCc-CCCC--cCcccEEECcCCc
Confidence 999999999985 5654 35899999999999984 578999999999999999985 6643 3589999999999
Q ss_pred CCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEcCCCcCCC
Q 004822 309 LTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRLRGNPFCL 386 (728)
Q Consensus 309 l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l~~N~~~~ 386 (728)
++ .+| .+..+++|+.|++++|++++ +|.. .++|+.|++++|++++++.. .++++.|++++|.+.+
T Consensus 227 l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~--------~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 227 LE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL--------PPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp CS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC--------CTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred CC-ccc-ccCCCCCCCEEECCCCcCCc-cccc--------ccccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence 99 566 48999999999999999985 6642 36789999999999987654 3778899999998865
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=2.3e-27 Score=246.66 Aligned_cols=237 Identities=19% Similarity=0.236 Sum_probs=141.4
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCc-CCCcCCccCCCCCCCCEEE
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNE-LTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~ 160 (728)
.+++.|++++|++++..+..|..+++|++|++++|.+.+..|..|.++++|++|++++|. ++...|..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 356666666666665555556666666666666666665556666666666666666665 5544455666666666666
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
+++|.+++..|..|.++++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666666556666666666666666666665555556666666666666666665555556666666666666666654
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccC
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSG 319 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~ 319 (728)
..|..+..+++|+.|++++|++++.++ .+..+++|+.|++++|++....+...+...++.+..+.+.+....|..+.+
T Consensus 192 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 192 -VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp -ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred -cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCC
Confidence 445556666666666666666665544 355666666666666666543332222233444455556665555555443
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.2e-29 Score=262.07 Aligned_cols=248 Identities=19% Similarity=0.235 Sum_probs=171.9
Q ss_pred cccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCC-CcCCccCC-------CCCCCCEEEeeccCCCCCCcH
Q 004822 101 EIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELT-GSLPEELG-------YLPKLDRIQIDQNYISGSLPK 172 (728)
Q Consensus 101 ~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~ 172 (728)
.++..++|+.|++++|.+ .+|..+... |++|+|++|.++ ..+|..+. ++++|++|+|++|.+++.+|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 346677888999999998 677766544 888899999884 45666555 688888888888888888887
Q ss_pred hh--hccCCCCEEEccCcccccccccccCCC-----CCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCC--C
Q 004822 173 SF--ANLNKTRHFHMNNNSISGQIPPELSRL-----PSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT--I 243 (728)
Q Consensus 173 ~~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~--~ 243 (728)
.+ ..+++|++|+|++|++++. |..+..+ ++|++|++++|++++..+..|+.+++|++|++++|++.+ . .
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 191 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-ERGL 191 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH-HHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc-chHH
Confidence 76 7888888888888888876 6666665 788888888888887777788888888888888888754 2 2
Q ss_pred cccc--cCCCCCcEEEccCCcCccCCC----CCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccCCCCCCcCch
Q 004822 244 PASY--SNMSKLLKLSLRNCSLQGPMP----DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPS 315 (728)
Q Consensus 244 p~~~--~~l~~L~~L~L~~n~l~~~~~----~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~N~l~~~~p~ 315 (728)
+..+ ..+++|++|++++|++++... .+..+++|+.|++++|++++.+|...+. ++|+.|+|++|+|+ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 3333 677777777777777763221 2345667777777777777555432222 56666666666666 4454
Q ss_pred hccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCC
Q 004822 316 NFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTN 364 (728)
Q Consensus 316 ~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~ 364 (728)
.+. ++|+.|+|++|+|++. |. +. .+++|+.|++++|++++
T Consensus 271 ~~~--~~L~~L~Ls~N~l~~~-p~-~~-----~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 271 GLP--AKLSVLDLSYNRLDRN-PS-PD-----ELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCC--SEEEEEECCSSCCCSC-CC-TT-----TSCEEEEEECTTCTTTC
T ss_pred hcc--CCceEEECCCCCCCCC-hh-Hh-----hCCCCCEEeccCCCCCC
Confidence 444 5666666666666643 44 33 45556666666665554
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.4e-28 Score=258.17 Aligned_cols=264 Identities=23% Similarity=0.206 Sum_probs=209.6
Q ss_pred ceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEee
Q 004822 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (728)
Q Consensus 83 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 162 (728)
+++.++++.+++.......+..+++|++|+|++|++++..|..|.++++|++|+|++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 56777888888876666666778899999999999998888889999999999999999986654 8899999999999
Q ss_pred ccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCC
Q 004822 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (728)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 242 (728)
+|.+++.. ..++|++|++++|.+.+..+.. +++|++|++++|++++..+..+..+++|++|++++|.+++ .
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ 159 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-V 159 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE-E
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc-c
Confidence 99987543 3489999999999998765543 5789999999999998778888889999999999999986 4
Q ss_pred Ccccc-cCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCC
Q 004822 243 IPASY-SNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGL 320 (728)
Q Consensus 243 ~p~~~-~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l 320 (728)
.+..+ ..+++|++|++++|.+++.. ....+++|++|++++|++++ +|+.+.. ++|+.|+|++|+++ .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 44544 47889999999999988763 33457889999999998884 4444333 78888888888888 457778888
Q ss_pred ccCceeecccccCc-ccCCcchhhhccCCCCCCcEEECc-CCcCCCc
Q 004822 321 PRLQRLFIANNSLS-GSIPSSIWQSRTLNATETFILDFQ-NNNLTNI 365 (728)
Q Consensus 321 ~~L~~L~L~~N~l~-~~ip~~~~~~~~l~~~~L~~L~l~-~N~l~~~ 365 (728)
++|+.|++++|+++ +.+|..+. .+++|+.++++ .+.+++.
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~-----~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFS-----KNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHH-----TCHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEccCCCccCcCHHHHHh-----ccccceEEECCCchhccCC
Confidence 88888888888888 66666665 56677777777 3445544
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=9.9e-25 Score=249.27 Aligned_cols=287 Identities=25% Similarity=0.302 Sum_probs=229.0
Q ss_pred CCCCCCCCCCCCCcceEEcCCCC-CCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCC
Q 004822 54 LSNWNRGDPCTSNWTGVLCFNTT-MDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSL 132 (728)
Q Consensus 54 l~~w~~~~~C~~~w~gv~C~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 132 (728)
+..|....+|+ .|+|..|.... ..+...+++.|++++++++ .+|..+. ++|++|+|++|+++ .+|. .+++|
T Consensus 12 w~~W~~~~~~~-~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L 83 (622)
T 3g06_A 12 WSAWRRAAPAE-ESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPEL 83 (622)
T ss_dssp HHHHHHTCCGG-GHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTC
T ss_pred HHHHHhcCCcc-hhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCC
Confidence 44565544442 68664321000 0001235899999999998 6777776 89999999999999 5665 57999
Q ss_pred cEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCC
Q 004822 133 ELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNN 212 (728)
Q Consensus 133 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 212 (728)
++|+|++|+++ .+|. .+++|++|+|++|.+++..+ .+++|+.|++++|.++. +|.. +++|++|++++|
T Consensus 84 ~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N 151 (622)
T 3g06_A 84 RTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDN 151 (622)
T ss_dssp CEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSS
T ss_pred CEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCC
Confidence 99999999998 4565 78999999999999997544 67899999999999986 4443 489999999999
Q ss_pred CCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCC
Q 004822 213 NLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPP 292 (728)
Q Consensus 213 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~ 292 (728)
++++ +|. .+++|+.|++++|.+++ +| ..+++|+.|++++|++++.+.. +++|+.|++++|.++ .+|.
T Consensus 152 ~l~~-l~~---~~~~L~~L~L~~N~l~~--l~---~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~-~l~~ 218 (622)
T 3g06_A 152 QLAS-LPA---LPSELCKLWAYNNQLTS--LP---MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLT-SLPA 218 (622)
T ss_dssp CCSC-CCC---CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred cCCC-cCC---ccCCCCEEECCCCCCCC--Cc---ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCccc-ccCC
Confidence 9985 444 35789999999999985 55 5578999999999999975543 478999999999998 6665
Q ss_pred CCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCC-CC
Q 004822 293 GRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF-NI 371 (728)
Q Consensus 293 ~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~-~~ 371 (728)
. .++|+.|+|++|+|++ +| ..+++|+.|+|++|+|+ .+|. .+++|+.|++++|+|+.++..+ .+
T Consensus 219 ~--~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~--------~~~~L~~L~Ls~N~L~~lp~~l~~l 283 (622)
T 3g06_A 219 L--PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM--------LPSGLLSLSVYRNQLTRLPESLIHL 283 (622)
T ss_dssp C--CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC--------CCTTCCEEECCSSCCCSCCGGGGGS
T ss_pred C--CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc--------ccccCcEEeCCCCCCCcCCHHHhhc
Confidence 3 3789999999999996 45 56789999999999999 5776 2478999999999999887655 58
Q ss_pred CCceEEEcCCCcCCCCC
Q 004822 372 PPNVTVRLRGNPFCLNT 388 (728)
Q Consensus 372 ~~l~~l~l~~N~~~~~~ 388 (728)
++++.|++++|++.+..
T Consensus 284 ~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 284 SSETTVNLEGNPLSERT 300 (622)
T ss_dssp CTTCEEECCSCCCCHHH
T ss_pred cccCEEEecCCCCCCcC
Confidence 89999999999997654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.8e-27 Score=249.95 Aligned_cols=246 Identities=20% Similarity=0.209 Sum_probs=215.9
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
.++|+.|++++|.+++..+..|..+++|++|+|++|++++..| |..+++|++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEE
Confidence 4689999999999998888899999999999999999997655 999999999999999998543 348999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCC-CCCCCcEEEcccccCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELS-ELPKLLILQLDNNNFE 239 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~L~~N~l~ 239 (728)
+++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|++++..+..+. .+++|++|++++|.++
T Consensus 106 l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 9999999776554 67899999999999988888999999999999999999987777764 7899999999999997
Q ss_pred CCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCC-CcCchhc
Q 004822 240 GTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLT-GTIPSNF 317 (728)
Q Consensus 240 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~-~~~p~~~ 317 (728)
+ ++. ...+++|++|++++|++++.++.+..+++|+.|++++|+++ .+|..+.. ++|+.|++++|+++ +.+|..+
T Consensus 183 ~--~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 258 (317)
T 3o53_A 183 D--VKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (317)
T ss_dssp E--EEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHH
T ss_pred c--ccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHH
Confidence 5 343 44599999999999999988888889999999999999999 57765433 79999999999999 7888999
Q ss_pred cCCccCceeecc-cccCcccCCcc
Q 004822 318 SGLPRLQRLFIA-NNSLSGSIPSS 340 (728)
Q Consensus 318 ~~l~~L~~L~L~-~N~l~~~ip~~ 340 (728)
..+++|+.|+++ .+.++|..|..
T Consensus 259 ~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 259 SKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred hccccceEEECCCchhccCCchhc
Confidence 999999999999 45677666654
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.7e-25 Score=231.40 Aligned_cols=208 Identities=23% Similarity=0.264 Sum_probs=124.5
Q ss_pred CCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEcc
Q 004822 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (728)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 186 (728)
+|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+|++|.+++..+..
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------- 95 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA------------- 95 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh-------------
Confidence 4566666666665554445555555555555555555444445555555555555555555444444
Q ss_pred CcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccC
Q 004822 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP 266 (728)
Q Consensus 187 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 266 (728)
|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+|..+..+++|++|++++|++++.
T Consensus 96 -----------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 96 -----------FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp -----------TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred -----------hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 444555555555555555444444555555555555555555433455566666666666666666554
Q ss_pred CC-CCCCCCCcC----EEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCC
Q 004822 267 MP-DLSRIPNLG----YLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIP 338 (728)
Q Consensus 267 ~~-~l~~l~~L~----~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip 338 (728)
.+ .+..+++|+ .|++++|.+++..+..+...+|+.|++++|++++..+..|..+++|+.|++++|++++..|
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 44 333333344 6778888877443433333578888888888887777777888899999999998886544
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=3.7e-25 Score=228.08 Aligned_cols=215 Identities=21% Similarity=0.280 Sum_probs=169.2
Q ss_pred CCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCC
Q 004822 61 DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (728)
Q Consensus 61 ~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 140 (728)
+.| .|.|+.|... .+.+.+++++++++. +|..+. ++|++|+|++|++.+..+..|.++++|++|+|++|
T Consensus 3 ~~C--~~~~~~C~c~------~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 3 ALC--KKDGGVCSCN------NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN 71 (270)
T ss_dssp CCB--GGGTCSBEEE------TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS
T ss_pred ccC--CCCCCCCEeC------CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC
Confidence 456 6999998542 357889999999884 565554 67899999999998777778899999999999999
Q ss_pred cCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCc
Q 004822 141 ELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPP 220 (728)
Q Consensus 141 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 220 (728)
.++...+..|..+++|++|+|++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|++++..+.
T Consensus 72 ~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 151 (270)
T 2o6q_A 72 KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKG 151 (270)
T ss_dssp CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHh
Confidence 99866666778889999999999998887777888888888888888888877777788888888888888888876666
Q ss_pred CCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCc
Q 004822 221 ELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLN 287 (728)
Q Consensus 221 ~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~ 287 (728)
.|..+++|+.|++++|.+++ ..+..|..+++|+.|++++|++++.++ .+..+++|+.|++++|.+.
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred HccCCcccceeEecCCcCcE-eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 67788888888888888875 344457777777777777777776655 4666677777777777665
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=8.4e-27 Score=260.79 Aligned_cols=225 Identities=25% Similarity=0.223 Sum_probs=157.9
Q ss_pred CCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEE
Q 004822 104 RLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (728)
Q Consensus 104 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 183 (728)
.+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34478888888888887777788888888888888888876555 7788888888888888775432 3778888
Q ss_pred EccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCccccc-CCCCCcEEEccCCc
Q 004822 184 HMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYS-NMSKLLKLSLRNCS 262 (728)
Q Consensus 184 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~ 262 (728)
++++|.+.+..+. .+++|++|++++|++++..|..++.+++|+.|+|++|.+++ ..|..+. .+++|+.|+|++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT-VNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCE-EEGGGGGGGTTTCCEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCC-cChHHHhhhCCcccEEecCCCc
Confidence 8888888766553 34678888888888887777777778888888888888876 4555554 67777777777777
Q ss_pred CccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCCCcCchhccCCccCceeecccccCc-ccCCcc
Q 004822 263 LQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS-GSIPSS 340 (728)
Q Consensus 263 l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~ip~~ 340 (728)
+++..+ ...+++|+.|+|++|.+++..|. +.. ++|+.|+|++|.+++ +|..+..+++|+.|++++|+++ +.+|..
T Consensus 181 l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 181 IYDVKG-QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CCEEEC-CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cccccc-cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 776533 33467777777777777743332 222 566677777776664 4555666666777777777666 444444
Q ss_pred hh
Q 004822 341 IW 342 (728)
Q Consensus 341 ~~ 342 (728)
+.
T Consensus 258 ~~ 259 (487)
T 3oja_A 258 FS 259 (487)
T ss_dssp HT
T ss_pred HH
Confidence 43
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.5e-25 Score=230.09 Aligned_cols=227 Identities=19% Similarity=0.235 Sum_probs=172.6
Q ss_pred CCCCCCcc--eEEcCCCC---CCCCC-cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcE
Q 004822 61 DPCTSNWT--GVLCFNTT---MDDGY-LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (728)
Q Consensus 61 ~~C~~~w~--gv~C~~~~---~~~~~-~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 134 (728)
|||.+.+. .+.|.+.. .+..+ .+++.|++++|++++..+..|.++++|++|++++|++.+..+..|.++++|++
T Consensus 1 ~~C~~~~~~~~~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (276)
T 2z62_A 1 EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80 (276)
T ss_dssp CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCceeccCCceEEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCE
Confidence 46755444 57887653 23333 46999999999999888889999999999999999999888889999999999
Q ss_pred EeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccc-cccccCCCCCCcEEECcCCC
Q 004822 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQ-IPPELSRLPSLVHMLLDNNN 213 (728)
Q Consensus 135 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~ 213 (728)
|+|++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+.+. +|..+..+++|++|++++|+
T Consensus 81 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~ 160 (276)
T 2z62_A 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred EECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence 99999999988889999999999999999999987777788888899999988888763 57778888888888888888
Q ss_pred CCCCCCcCCCCCCCCc----EEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcc
Q 004822 214 LTGYLPPELSELPKLL----ILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNG 288 (728)
Q Consensus 214 l~~~~~~~l~~l~~L~----~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~ 288 (728)
+++..+..+..+++|+ .|++++|.+++ ++.......+|+.|++++|++++.++ .+..+++|+.|++++|++++
T Consensus 161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCEECGGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCcCCHHHhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 8766666666655555 66777776653 33333333356666666666665544 34555566666666655554
Q ss_pred c
Q 004822 289 S 289 (728)
Q Consensus 289 ~ 289 (728)
.
T Consensus 239 ~ 239 (276)
T 2z62_A 239 S 239 (276)
T ss_dssp C
T ss_pred c
Confidence 3
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=3.8e-26 Score=255.52 Aligned_cols=236 Identities=20% Similarity=0.203 Sum_probs=211.0
Q ss_pred CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 004822 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (728)
Q Consensus 80 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 159 (728)
.+++|+.|+|++|.+++..|..|+.+++|++|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34689999999999999888899999999999999999997766 9999999999999999985433 3899999
Q ss_pred EeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCC-CCCCCcEEEcccccC
Q 004822 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELS-ELPKLLILQLDNNNF 238 (728)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~L~~N~l 238 (728)
++++|.+++..+. .+++|+.|+|++|.+++..|..++.+++|++|+|++|.+++..|..+. .+++|+.|+|++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999987665 458899999999999999999999999999999999999998888886 799999999999999
Q ss_pred CCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccCCCCC-CcCchh
Q 004822 239 EGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSNNKLT-GTIPSN 316 (728)
Q Consensus 239 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~N~l~-~~~p~~ 316 (728)
++ ++ ....+++|+.|+|++|.+++.++.+..+++|+.|+|++|.+++ +|..+.. ++|+.|++++|.+. +.+|..
T Consensus 182 ~~--~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YD--VK-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CE--EE-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cc--cc-ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 86 33 3446999999999999999988888899999999999999995 6665433 79999999999998 778889
Q ss_pred ccCCccCceeecc
Q 004822 317 FSGLPRLQRLFIA 329 (728)
Q Consensus 317 ~~~l~~L~~L~L~ 329 (728)
+..++.|+.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 9999999999886
No 69
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.92 E-value=1.7e-27 Score=265.14 Aligned_cols=304 Identities=17% Similarity=0.159 Sum_probs=205.6
Q ss_pred cceeEEECCCCCCccccCccc-cCCC----CCCEEEccCCCCcc----CCCccccCCCCCcEEeccCCcCCCcCCcc---
Q 004822 82 LHLRELQLLNLNLSGNLSPEI-GRLS----YLTILDFMWNKISG----SIPKEIGNIKSLELLLLNGNELTGSLPEE--- 149 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~-~~l~----~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--- 149 (728)
++|+.|++++|.+....+..+ ..++ +|++|+|++|++.. .+|..+..+++|++|+|++|.++...+..
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 135 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE 135 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH
Confidence 578888888888766444333 2344 58888888888773 45777788888888888888876443332
Q ss_pred --CCCCCCCCEEEeeccCCCCCC----cHhhhccCCCCEEEccCcccccccccccC-----CCCCCcEEECcCCCCCCC-
Q 004822 150 --LGYLPKLDRIQIDQNYISGSL----PKSFANLNKTRHFHMNNNSISGQIPPELS-----RLPSLVHMLLDNNNLTGY- 217 (728)
Q Consensus 150 --~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~- 217 (728)
+...++|++|++++|++++.. +..+..+++|++|++++|.+....+..+. ..++|++|++++|++++.
T Consensus 136 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 215 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 215 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH
T ss_pred HHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH
Confidence 223567888888888887643 55566778888888888887654443332 356888888888888753
Q ss_pred ---CCcCCCCCCCCcEEEcccccCCCCCC----cccccCCCCCcEEEccCCcCccC----CC-CCCCCCCcCEEEccCCC
Q 004822 218 ---LPPELSELPKLLILQLDNNNFEGTTI----PASYSNMSKLLKLSLRNCSLQGP----MP-DLSRIPNLGYLDLSSNQ 285 (728)
Q Consensus 218 ---~~~~l~~l~~L~~L~L~~N~l~~~~~----p~~~~~l~~L~~L~L~~n~l~~~----~~-~l~~l~~L~~L~Ls~N~ 285 (728)
++..+..+++|++|++++|.++.... +..+..+++|++|++++|.+++. .+ .+..+++|++|++++|.
T Consensus 216 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 216 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 45566677888888888887754111 22233577888888888888763 12 45567788888888888
Q ss_pred CcccCCCCCc------cCCccEEEccCCCCCCc----CchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEE
Q 004822 286 LNGSIPPGRL------SLNITTIKLSNNKLTGT----IPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFIL 355 (728)
Q Consensus 286 l~~~ip~~~~------~~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L 355 (728)
+++..+.... .++|+.|++++|.+++. ++..+..+++|+.|++++|++++..+..+...-....++|+.|
T Consensus 296 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 375 (461)
T 1z7x_W 296 LGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVL 375 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEE
Confidence 7643222111 14788888888888765 4566677788888888888887665555543211125678888
Q ss_pred ECcCCcCCC-----cCCCC-CCCCceEEEcCCCcCC
Q 004822 356 DFQNNNLTN-----ISGSF-NIPPNVTVRLRGNPFC 385 (728)
Q Consensus 356 ~l~~N~l~~-----~~~~~-~~~~l~~l~l~~N~~~ 385 (728)
++++|++++ ++..+ ..++++.|++++|++.
T Consensus 376 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 376 WLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp ECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred ECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 888888874 23222 3677888888888775
No 70
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1e-24 Score=225.01 Aligned_cols=223 Identities=18% Similarity=0.226 Sum_probs=141.9
Q ss_pred ceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEee
Q 004822 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQID 162 (728)
Q Consensus 83 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 162 (728)
.+..+++..+.+... ..+..+++|+.|++++|.+.. + ..+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 444455555555433 234566777777777777763 2 2467777777777777777652 356777777777777
Q ss_pred ccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCC
Q 004822 163 QNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTT 242 (728)
Q Consensus 163 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 242 (728)
+|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|++++ .
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-L 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-C
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-c
Confidence 777776666667777777777777777776666666677777777777777766555556666677777777776664 3
Q ss_pred CcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCc
Q 004822 243 IPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLP 321 (728)
Q Consensus 243 ~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 321 (728)
.+..+..+++|+.|++++|++++.++ .+..+++|+.|++++|.+.+. ++
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------------------------------~~ 222 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------------------------------CP 222 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------------------------------TT
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------------------------------Cc
Confidence 34445666666666666666665555 345555555555555554432 33
Q ss_pred cCceeecccccCcccCCcchh
Q 004822 322 RLQRLFIANNSLSGSIPSSIW 342 (728)
Q Consensus 322 ~L~~L~L~~N~l~~~ip~~~~ 342 (728)
+|+.|+++.|+++|.+|..++
T Consensus 223 ~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 223 GIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp TTHHHHHHHHHTGGGBBCTTS
T ss_pred HHHHHHHHHHhCCCcccCccc
Confidence 455666666666666666555
No 71
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=8.1e-23 Score=233.45 Aligned_cols=240 Identities=25% Similarity=0.316 Sum_probs=202.8
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
.+|+.|++++|+++. +|. .+++|++|+|++|+++ .+|. .+++|++|+|++|.+++ +|. .+++|+.|++
T Consensus 61 ~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L 128 (622)
T 3g06_A 61 AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWI 128 (622)
T ss_dssp TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEEC
T ss_pred CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEEC
Confidence 589999999999984 555 6799999999999998 4665 67999999999999995 454 6789999999
Q ss_pred eccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCC
Q 004822 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 241 (728)
++|++++ +|. .+++|++|++++|.+++. |. .+++|+.|++++|++++ +| ..+++|+.|++++|.+++
T Consensus 129 ~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~- 195 (622)
T 3g06_A 129 FGNQLTS-LPV---LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS- 195 (622)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-
T ss_pred CCCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-
Confidence 9999986 444 358999999999999853 43 35789999999999996 55 457899999999999985
Q ss_pred CCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCc
Q 004822 242 TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLP 321 (728)
Q Consensus 242 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~ 321 (728)
+|.. +++|+.|++++|.++..+. .+++|+.|++++|++++ +|. ..++|+.|+|++|+|+. +|. .++
T Consensus 196 -l~~~---~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~-lp~--~l~~L~~L~Ls~N~L~~-lp~---~~~ 261 (622)
T 3g06_A 196 -LPTL---PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS-LPV--LPSELKELMVSGNRLTS-LPM---LPS 261 (622)
T ss_dssp -CCCC---CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCT
T ss_pred -CCCc---cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCc-CCC--CCCcCcEEECCCCCCCc-CCc---ccc
Confidence 5543 5789999999999996553 24789999999999994 773 34799999999999995 454 678
Q ss_pred cCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcC
Q 004822 322 RLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNIS 366 (728)
Q Consensus 322 ~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~ 366 (728)
+|+.|+|++|+|+ .+|..+. .+++|+.|+|++|.+++..
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~-----~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLI-----HLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGG-----GSCTTCEEECCSCCCCHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHh-----hccccCEEEecCCCCCCcC
Confidence 9999999999999 8898887 7899999999999999754
No 72
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.91 E-value=5.3e-27 Score=261.12 Aligned_cols=298 Identities=16% Similarity=0.167 Sum_probs=141.5
Q ss_pred cceeEEECCCCCCcc----ccCccccCCCCCCEEEccCCCCccCCCccc-cCCC----CCcEEeccCCcCCC----cCCc
Q 004822 82 LHLRELQLLNLNLSG----NLSPEIGRLSYLTILDFMWNKISGSIPKEI-GNIK----SLELLLLNGNELTG----SLPE 148 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~----~L~~L~L~~N~l~~----~~p~ 148 (728)
++++.|++++|+++. .++..+..+++|++|+|++|.+....+..+ ..++ +|++|+|++|.++. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 345555555555543 233444555555555555555543322222 1233 45555555555552 3355
Q ss_pred cCCCCCCCCEEEeeccCCCCCCcHhhhc-----cCCCCEEEccCcccccc----cccccCCCCCCcEEECcCCCCCCCCC
Q 004822 149 ELGYLPKLDRIQIDQNYISGSLPKSFAN-----LNKTRHFHMNNNSISGQ----IPPELSRLPSLVHMLLDNNNLTGYLP 219 (728)
Q Consensus 149 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~ 219 (728)
.+..+++|++|+|++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 5555555555555555554433333221 33455555555555542 23344445555555555555543322
Q ss_pred cCCC-----CCCCCcEEEcccccCCCCC---CcccccCCCCCcEEEccCCcCccCC-----C-CCCCCCCcCEEEccCCC
Q 004822 220 PELS-----ELPKLLILQLDNNNFEGTT---IPASYSNMSKLLKLSLRNCSLQGPM-----P-DLSRIPNLGYLDLSSNQ 285 (728)
Q Consensus 220 ~~l~-----~l~~L~~L~L~~N~l~~~~---~p~~~~~l~~L~~L~L~~n~l~~~~-----~-~l~~l~~L~~L~Ls~N~ 285 (728)
..+. ..++|++|++++|.++... ++..+..+++|++|++++|.+++.. + .+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2221 1345555666555554310 2444455555666666655554321 1 12234555566666655
Q ss_pred Cccc----CCCCCc-cCCccEEEccCCCCCCcCchhccC-----CccCceeecccccCccc----CCcchhhhccCCCCC
Q 004822 286 LNGS----IPPGRL-SLNITTIKLSNNKLTGTIPSNFSG-----LPRLQRLFIANNSLSGS----IPSSIWQSRTLNATE 351 (728)
Q Consensus 286 l~~~----ip~~~~-~~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~----ip~~~~~~~~l~~~~ 351 (728)
++.. ++.... .++|+.|++++|.+++..+..+.. .++|+.|++++|.+++. +|..+. .+++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-----~~~~ 342 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA-----QNRF 342 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHH-----HCSS
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHh-----hCCC
Confidence 5532 222111 145556666666555433333322 24555666666655543 222232 3455
Q ss_pred CcEEECcCCcCCCcCC-CC------CCCCceEEEcCCCcC
Q 004822 352 TFILDFQNNNLTNISG-SF------NIPPNVTVRLRGNPF 384 (728)
Q Consensus 352 L~~L~l~~N~l~~~~~-~~------~~~~l~~l~l~~N~~ 384 (728)
|+.|++++|++++... .+ ..+.+++|++++|.+
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 5566666665554311 00 134555555555554
No 73
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.91 E-value=9.7e-24 Score=222.08 Aligned_cols=223 Identities=18% Similarity=0.199 Sum_probs=171.5
Q ss_pred CCCCEEEccCCCCccCCCc---cccCCCCCcEEeccCCcCCCcCCccC--CCCCCCCEEEeeccCCCCCCc----Hhhhc
Q 004822 106 SYLTILDFMWNKISGSIPK---EIGNIKSLELLLLNGNELTGSLPEEL--GYLPKLDRIQIDQNYISGSLP----KSFAN 176 (728)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 176 (728)
..++.+++.++.+....-. .+..+++|++|++++|.+++..|..+ ..+++|++|+|++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4578888888877532111 12235679999999999998888888 889999999999999987655 45567
Q ss_pred cCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCC--C--CcCCCCCCCCcEEEcccccCCCCCCcc----ccc
Q 004822 177 LNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY--L--PPELSELPKLLILQLDNNNFEGTTIPA----SYS 248 (728)
Q Consensus 177 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--~~~l~~l~~L~~L~L~~N~l~~~~~p~----~~~ 248 (728)
+++|++|+|++|.+.+..+..|..+++|++|+|++|++.+. + +..+..+++|++|++++|+++ .++. .+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~ 221 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALAA 221 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHHh
Confidence 88999999999999888888899999999999999987642 1 233467889999999999986 3443 257
Q ss_pred CCCCCcEEEccCCcCccCCC-CCCCC---CCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCc
Q 004822 249 NMSKLLKLSLRNCSLQGPMP-DLSRI---PNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQ 324 (728)
Q Consensus 249 ~l~~L~~L~L~~n~l~~~~~-~l~~l---~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 324 (728)
.+++|++|+|++|++++..| .+..+ ++|++|+|++|+++ .+|.... ++|+.|+|++|+|++. |. +..+++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 78899999999999988754 45444 68888888888888 6776543 6888888888888864 22 56677788
Q ss_pred eeecccccCc
Q 004822 325 RLFIANNSLS 334 (728)
Q Consensus 325 ~L~L~~N~l~ 334 (728)
.|+|++|+|+
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 8888888776
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.6e-22 Score=208.29 Aligned_cols=202 Identities=22% Similarity=0.320 Sum_probs=139.5
Q ss_pred CCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEcc
Q 004822 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMN 186 (728)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 186 (728)
.++.+++++++++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|.++...+..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4678888888888 4666554 678888888888887766778888888888888888876666667777788888888
Q ss_pred CcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccC
Q 004822 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP 266 (728)
Q Consensus 187 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 266 (728)
+|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++ ..+..+..+++|+.|++++|++++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-cCHhHccCCcccceeEecCCcCcEe
Confidence 777776666666777777777777777776666666677777777777776664 2233355556666666666555554
Q ss_pred CC-CCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCcc
Q 004822 267 MP-DLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSG 335 (728)
Q Consensus 267 ~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 335 (728)
.+ .+..+++ |+.|+|++|++++..+..|..+++|+.|+|++|++..
T Consensus 173 ~~~~~~~l~~-----------------------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTE-----------------------LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTT-----------------------CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCC-----------------------cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 44 3444444 5555555555554445566777888888888888764
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.8e-23 Score=214.27 Aligned_cols=203 Identities=17% Similarity=0.242 Sum_probs=183.4
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+.+++.|++.++.+.. .+.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 4689999999999874 34689999999999999999863 4799999999999999999988888899999999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
+++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 99999999888889999999999999999998888888999999999999999998888888999999999999999997
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCC
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGR 294 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 294 (728)
..+..+..+++|+.|++++|.+.+. +++|+.|+++.|.++|.+|...
T Consensus 196 -~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 196 -VPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred -cCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCcc
Confidence 5667789999999999999988754 5578889999999998888753
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.1e-22 Score=211.61 Aligned_cols=200 Identities=24% Similarity=0.320 Sum_probs=93.9
Q ss_pred ccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCC
Q 004822 102 IGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTR 181 (728)
Q Consensus 102 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 181 (728)
++++++++++++++|+++ .+|..+. +++++|+|++|.+++..+..|..+++|++|+|++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344555555555555555 3343332 3455555555555544444455555555555555554432221 3344444
Q ss_pred EEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCC
Q 004822 182 HFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNC 261 (728)
Q Consensus 182 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n 261 (728)
+|++++|.+. .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l----------------------- 136 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL----------------------- 136 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-----------------------
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-----------------------
Confidence 4444444443 2333344444444444444444433334444444444444444444
Q ss_pred cCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccCCCCCCcCchhccCCccCceeecccccCc
Q 004822 262 SLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 334 (728)
Q Consensus 262 ~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 334 (728)
++.++ .+..+++|+.|+|++|+++ .+|...+. ++|+.|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus 137 --~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 137 --KTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp --CCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred --CccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 43333 2334444444444444444 33332222 44555555555555 34445555566777777777665
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=7.3e-23 Score=208.49 Aligned_cols=187 Identities=18% Similarity=0.240 Sum_probs=123.4
Q ss_pred CcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCc
Q 004822 66 NWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGS 145 (728)
Q Consensus 66 ~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 145 (728)
.|.|.+|. ...+.+++++++++ .+|..+. ++|+.|+|++|++.+..+..|.++++|++|+|++|.+++.
T Consensus 6 ~~~gC~C~--------~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 74 (251)
T 3m19_A 6 TVTGCTCN--------EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74 (251)
T ss_dssp HHHSSEEE--------GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCceEcC--------CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc
Confidence 68899994 24667888888877 3555554 5778888888888877777788888888888888888777
Q ss_pred CCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCC
Q 004822 146 LPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSEL 225 (728)
Q Consensus 146 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l 225 (728)
.+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+
T Consensus 75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence 77777777777777777777776666666677777777777776665555555666666666666666665444455555
Q ss_pred CCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCc
Q 004822 226 PKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (728)
Q Consensus 226 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 264 (728)
++|++|+|++|++++ ..+..+..+++|+.|++++|.++
T Consensus 155 ~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 155 TNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCcee
Confidence 556666655555553 22333444444444444444433
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=4.5e-23 Score=208.35 Aligned_cols=195 Identities=16% Similarity=0.180 Sum_probs=121.9
Q ss_pred CCCEEEccCCCCccCCCccccCCCCCcEEeccCCc-CCCcCCccCCCCCCCCEEEeec-cCCCCCCcHhhhccCCCCEEE
Q 004822 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNE-LTGSLPEELGYLPKLDRIQIDQ-NYISGSLPKSFANLNKTRHFH 184 (728)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~ 184 (728)
+|++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 56666666666665555566666666666666665 5555555666666666666666 666655556666666666666
Q ss_pred ccCcccccccccccCCCCCCc---EEECcCC-CCCCCCCcCCCCCCCCc-EEEcccccCCCCCCcccccCCCCCcEEEcc
Q 004822 185 MNNNSISGQIPPELSRLPSLV---HMLLDNN-NLTGYLPPELSELPKLL-ILQLDNNNFEGTTIPASYSNMSKLLKLSLR 259 (728)
Q Consensus 185 L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~ 259 (728)
+++|.+++ +|. +..+++|+ +|++++| ++++..+..|..+++|+ +|++++|+++ .+|......++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcC
Confidence 66666664 343 55666665 6666666 66655555666666777 7777777665 344332223667777777
Q ss_pred CCc-CccCCC-CCCCC-CCcCEEEccCCCCcccCCCCCccCCccEEEccCC
Q 004822 260 NCS-LQGPMP-DLSRI-PNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNN 307 (728)
Q Consensus 260 ~n~-l~~~~~-~l~~l-~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N 307 (728)
+|+ +++..+ .+..+ ++|+.|++++|+++ .+|.. ...+|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 773 665555 46666 67777777777776 45544 2356777777665
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.3e-22 Score=209.30 Aligned_cols=200 Identities=25% Similarity=0.213 Sum_probs=169.2
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+.+++.+++++++++. +|..+. ++++.|+|++|.+.+..|..|.++++|++|+|++|.+++..+. ..+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEE
Confidence 4689999999999984 566554 6899999999999988889999999999999999999965443 7899999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
|++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|+++.
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 9999998 677889999999999999999998888899999999999999999998878888899999999999999985
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCc
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLN 287 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~ 287 (728)
..+..+..+++|+.|+|++|+++..+..+...++|+.|+|++|.+.
T Consensus 163 -l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 -LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred -cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 3344567788888888888887755555555666666666666654
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=7.9e-23 Score=215.13 Aligned_cols=224 Identities=20% Similarity=0.188 Sum_probs=183.3
Q ss_pred ceeEEECCCCCCccccCc---cccCCCCCCEEEccCCCCccCCCccc--cCCCCCcEEeccCCcCCCcCC----ccCCCC
Q 004822 83 HLRELQLLNLNLSGNLSP---EIGRLSYLTILDFMWNKISGSIPKEI--GNIKSLELLLLNGNELTGSLP----EELGYL 153 (728)
Q Consensus 83 ~l~~L~l~~~~l~~~~~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l 153 (728)
+++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 467788888777542211 12345679999999999999999988 999999999999999997665 456789
Q ss_pred CCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccc--c--ccccCCCCCCcEEECcCCCCCCCCCc----CCCCC
Q 004822 154 PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQ--I--PPELSRLPSLVHMLLDNNNLTGYLPP----ELSEL 225 (728)
Q Consensus 154 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~~~----~l~~l 225 (728)
++|++|+|++|.+.+..+..|.++++|++|+|++|++.+. + +..+..+++|++|++++|+++. ++. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999999999999999999999999998653 2 2234789999999999999973 333 24678
Q ss_pred CCCcEEEcccccCCCCCCcccccCC---CCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEE
Q 004822 226 PKLLILQLDNNNFEGTTIPASYSNM---SKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTI 302 (728)
Q Consensus 226 ~~L~~L~L~~N~l~~~~~p~~~~~l---~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L 302 (728)
++|++|+|++|++++ ..|..+..+ ++|++|+|++|+++..+..+. ++|+.|+|++|++++ +|.....++|+.|
T Consensus 224 ~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~-~~~~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNR-APQPDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCS-CCCTTSCCCCSCE
T ss_pred CCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCC-CchhhhCCCccEE
Confidence 999999999999987 567777666 699999999999996554553 799999999999995 3443233899999
Q ss_pred EccCCCCCC
Q 004822 303 KLSNNKLTG 311 (728)
Q Consensus 303 ~Ls~N~l~~ 311 (728)
+|++|+++.
T Consensus 300 ~L~~N~l~~ 308 (310)
T 4glp_A 300 TLDGNPFLV 308 (310)
T ss_dssp ECSSTTTSC
T ss_pred ECcCCCCCC
Confidence 999999974
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.6e-22 Score=201.75 Aligned_cols=218 Identities=16% Similarity=0.171 Sum_probs=147.6
Q ss_pred CCCCCCc-ce--EEcCCCC-CCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCC-CccCCCccccCCCCCcEE
Q 004822 61 DPCTSNW-TG--VLCFNTT-MDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNK-ISGSIPKEIGNIKSLELL 135 (728)
Q Consensus 61 ~~C~~~w-~g--v~C~~~~-~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L 135 (728)
..|.|.+ .+ |.|.+.+ ++.-..+++.|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|
T Consensus 6 ~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L 85 (239)
T 2xwt_C 6 PPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHI 85 (239)
T ss_dssp SSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEE
T ss_pred CCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEE
Confidence 3455533 43 4475422 22222367777777777776666677777777777777776 766666677777777777
Q ss_pred eccC-CcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCC---EEEccCc-ccccccccccCCCCCCc-EEEC
Q 004822 136 LLNG-NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTR---HFHMNNN-SISGQIPPELSRLPSLV-HMLL 209 (728)
Q Consensus 136 ~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~L 209 (728)
++++ |.+++..+..|.++++|++|++++|.+++ +|. |..+++|+ +|++++| .+.+..+..|..+++|+ +|++
T Consensus 86 ~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 86 EIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred ECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence 7777 77776666677777777777777777775 444 66777776 7777777 77766666677777777 7777
Q ss_pred cCCCCCCCCCcCCCCCCCCcEEEccccc-CCCCCCcccccCC-CCCcEEEccCCcCccCCCCCCCCCCcCEEEccCC
Q 004822 210 DNNNLTGYLPPELSELPKLLILQLDNNN-FEGTTIPASYSNM-SKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSN 284 (728)
Q Consensus 210 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N 284 (728)
++|+++...+..+.. ++|+.|++++|+ +++ ..+..|..+ ++|+.|++++|++++.++. .+++|+.|+++++
T Consensus 164 ~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTV-IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCCEECTTTTTT-CEEEEEECTTCTTCCE-ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccCHhhcCC-CCCCEEEcCCCCCccc-CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 777777333333333 677777777774 764 334556777 7777777777777755443 5667777777765
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=1.7e-24 Score=230.36 Aligned_cols=212 Identities=16% Similarity=0.190 Sum_probs=165.3
Q ss_pred CCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCC--CCCCEEEccCCCCccCCCccccCCCCCcEEeccC
Q 004822 62 PCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRL--SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNG 139 (728)
Q Consensus 62 ~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 139 (728)
.|. .|.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++
T Consensus 35 vc~-~W~~~~~~~-------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~ 102 (336)
T 2ast_B 35 VCK-RWYRLASDE-------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSN 102 (336)
T ss_dssp SCH-HHHHHHTCS-------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTT
T ss_pred HHH-HHHHHhcCc-------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccC
Confidence 343 698888742 25789999998886 3556666 8899999999999877665 56789999999999
Q ss_pred CcCCCc-CCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCc-ccccc-cccccCCCCCCcEEECcCC-CCC
Q 004822 140 NELTGS-LPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN-SISGQ-IPPELSRLPSLVHMLLDNN-NLT 215 (728)
Q Consensus 140 N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~ 215 (728)
|.+++. ++..+..+++|++|+|++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| +++
T Consensus 103 ~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 103 SVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp CEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred CCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 998865 7778888999999999999988888888888999999999998 57653 5666778889999999998 887
Q ss_pred CC-CCcCCCCCC-CCcEEEcccc--cCCCCCCcccccCCCCCcEEEccCCc-CccCCC-CCCCCCCcCEEEccCCC
Q 004822 216 GY-LPPELSELP-KLLILQLDNN--NFEGTTIPASYSNMSKLLKLSLRNCS-LQGPMP-DLSRIPNLGYLDLSSNQ 285 (728)
Q Consensus 216 ~~-~~~~l~~l~-~L~~L~L~~N--~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~-~l~~l~~L~~L~Ls~N~ 285 (728)
+. ++..+..++ +|++|++++| .++...++..+..+++|+.|++++|. +++..+ .+..+++|+.|++++|.
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 54 456677788 8888888888 45422456667778888888888887 554333 56667777777777774
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=3.7e-24 Score=230.41 Aligned_cols=178 Identities=20% Similarity=0.198 Sum_probs=105.4
Q ss_pred EECCCCCCccccCccccCCCCCCEEEccCCCCccCCC----ccccCCC-CCcEEeccCCcCCCcCCccCCCC-----CCC
Q 004822 87 LQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIP----KEIGNIK-SLELLLLNGNELTGSLPEELGYL-----PKL 156 (728)
Q Consensus 87 L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~L 156 (728)
++++.+++++.+|..+...++|++|||++|.+.+..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4667777777666666666667777777777776555 5566666 67777777777776655555553 677
Q ss_pred CEEEeeccCCCCCCcHhhhcc-----CCCCEEEccCccccccccccc----CC-CCCCcEEECcCCCCCCCCCcC----C
Q 004822 157 DRIQIDQNYISGSLPKSFANL-----NKTRHFHMNNNSISGQIPPEL----SR-LPSLVHMLLDNNNLTGYLPPE----L 222 (728)
Q Consensus 157 ~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~----~~-l~~L~~L~L~~N~l~~~~~~~----l 222 (728)
++|+|++|.+++..+..+... ++|++|+|++|.+++..+..+ .. .++|++|+|++|++++..... +
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 777777777766666544433 677777777777665544332 23 246666666666666432222 2
Q ss_pred CCCC-CCcEEEcccccCCCCCCccc----ccCC-CCCcEEEccCCcCcc
Q 004822 223 SELP-KLLILQLDNNNFEGTTIPAS----YSNM-SKLLKLSLRNCSLQG 265 (728)
Q Consensus 223 ~~l~-~L~~L~L~~N~l~~~~~p~~----~~~l-~~L~~L~L~~n~l~~ 265 (728)
..++ +|++|+|++|++++ ..+.. +..+ ++|++|+|++|.+++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred hcCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 2333 56666666666554 23322 2223 355555555555543
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=7.1e-22 Score=211.51 Aligned_cols=244 Identities=18% Similarity=0.213 Sum_probs=148.4
Q ss_pred CCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcC
Q 004822 63 CTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNEL 142 (728)
Q Consensus 63 C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l 142 (728)
|.|.|..|.|.+. +++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++
T Consensus 7 C~C~~~~v~C~~~-----------------~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 7 CHCSNRVFLCQES-----------------KVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp SEEETTEEEEEST-----------------TCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred cEeeCCEEEecCC-----------------CCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence 7677888888542 333 344444 25677888888888755556677888888888888877
Q ss_pred CCcCC-ccCCCCCCCCE-EEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcC-CCCCCCCC
Q 004822 143 TGSLP-EELGYLPKLDR-IQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDN-NNLTGYLP 219 (728)
Q Consensus 143 ~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~ 219 (728)
.+.+| ..|.++++|++ +.+..|+++.+.|..|.++++|++|++++|++....+..+....++..|++.+ +++....+
T Consensus 67 ~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 67 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp CCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred CCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccc
Confidence 65544 45677777665 45566777777777777777777777777777766555566666666777654 45554444
Q ss_pred cCCCCCC-CCcEEEcccccCCCCCCcccccCCCCCcEEEccC-CcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc
Q 004822 220 PELSELP-KLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRN-CSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS 296 (728)
Q Consensus 220 ~~l~~l~-~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 296 (728)
..|..+. .++.|++++|+++ .++.......+|+.|++.+ |.++..++ .|..+++|+.|||++|+++ .+|... .
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~-~ 222 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG-L 222 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS-C
T ss_pred cchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh-h
Confidence 5555543 4666777777765 3444444455666666653 44444433 3566666666666666666 455432 2
Q ss_pred CCccEEEccCCCCCCcCchhccCCccCceeecccc
Q 004822 297 LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANN 331 (728)
Q Consensus 297 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 331 (728)
.+|+.|.+.++.--..+| .+..+++|+.+++.++
T Consensus 223 ~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 345555544443222333 2455555555555443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=5.3e-24 Score=229.19 Aligned_cols=254 Identities=16% Similarity=0.144 Sum_probs=172.5
Q ss_pred EEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCC----ccCCCCC-CCCEEEeeccCCCCCCcHhhhcc-----CC
Q 004822 110 ILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP----EELGYLP-KLDRIQIDQNYISGSLPKSFANL-----NK 179 (728)
Q Consensus 110 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~ 179 (728)
.+++++|.+++.+|..+...++|++|+|++|.++...+ +.+..++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999998888877777779999999999987666 6778888 89999999999998888888776 89
Q ss_pred CCEEEccCcccccccccccC----CC-CCCcEEECcCCCCCCCCCcCC----CC-CCCCcEEEcccccCCCCCC----cc
Q 004822 180 TRHFHMNNNSISGQIPPELS----RL-PSLVHMLLDNNNLTGYLPPEL----SE-LPKLLILQLDNNNFEGTTI----PA 245 (728)
Q Consensus 180 L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~~~~~l----~~-l~~L~~L~L~~N~l~~~~~----p~ 245 (728)
|++|+|++|.+++..+..+. .+ ++|++|++++|++++..+..+ .. .++|++|++++|.++. .. +.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI-KSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG-SCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH-HHHHHHHH
Confidence 99999999998876665443 34 789999999999886655443 33 2588888888888874 22 23
Q ss_pred cccCCC-CCcEEEccCCcCccCCC-----CCCCC-CCcCEEEccCCCCccc----CCCCCcc--CCccEEEccCCCCCCc
Q 004822 246 SYSNMS-KLLKLSLRNCSLQGPMP-----DLSRI-PNLGYLDLSSNQLNGS----IPPGRLS--LNITTIKLSNNKLTGT 312 (728)
Q Consensus 246 ~~~~l~-~L~~L~L~~n~l~~~~~-----~l~~l-~~L~~L~Ls~N~l~~~----ip~~~~~--~~L~~L~Ls~N~l~~~ 312 (728)
.+..++ +|++|+|++|++++..+ .+... ++|+.|+|++|.+++. ++..+.. ++|+.|+|++|++++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 344554 78888888888876554 23334 4788888888877642 2222111 3677777777777655
Q ss_pred Cc----hhccCCccCceeecccccCcccCCcchhhhc--cCCCCCCcEEECcCCcCCC
Q 004822 313 IP----SNFSGLPRLQRLFIANNSLSGSIPSSIWQSR--TLNATETFILDFQNNNLTN 364 (728)
Q Consensus 313 ~p----~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~--~l~~~~L~~L~l~~N~l~~ 364 (728)
.+ ..+..+++|+.|+|++|++.+..+..+.... .-.+++|+.||+++|++..
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 44 2335566777777777765432222221110 0134445555555555543
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.1e-21 Score=196.39 Aligned_cols=179 Identities=22% Similarity=0.267 Sum_probs=138.2
Q ss_pred CCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEc
Q 004822 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (728)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (728)
...++++++++.++ .+|..+. ++|++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35678888888888 5666654 67888888888888888888888888888888888888888888888888888888
Q ss_pred cCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCcc
Q 004822 186 NNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 186 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 265 (728)
++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++ ..+..+..+++|+.|+|++|++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS-IPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc-cCHHHcCcCcCCCEEECCCCcCCc
Confidence 8888887777777888888888888888886666667778888888888888775 334467777777777777777776
Q ss_pred CCC-CCCCCCCcCEEEccCCCCcc
Q 004822 266 PMP-DLSRIPNLGYLDLSSNQLNG 288 (728)
Q Consensus 266 ~~~-~l~~l~~L~~L~Ls~N~l~~ 288 (728)
.++ .+..+++|+.|++++|++.+
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCT
T ss_pred cCHHHHhCCCCCCEEEeeCCceeC
Confidence 665 56666677777777766653
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3.2e-24 Score=233.04 Aligned_cols=191 Identities=19% Similarity=0.272 Sum_probs=115.3
Q ss_pred ccCccccCCCCCCEEEccCCCCccCCC----ccccCCCCCcEEeccCC---cCCCcCCccC-------CCCCCCCEEEee
Q 004822 97 NLSPEIGRLSYLTILDFMWNKISGSIP----KEIGNIKSLELLLLNGN---ELTGSLPEEL-------GYLPKLDRIQID 162 (728)
Q Consensus 97 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~ 162 (728)
.++..+..+++|++|+|++|.+....+ ..+..+++|++|+|++| ++++.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 355667778888888888888876533 34667888888888885 3444555544 677888888888
Q ss_pred ccCCCC----CCcHhhhccCCCCEEEccCcccccccccccC----CC---------CCCcEEECcCCCCC-CCCC---cC
Q 004822 163 QNYISG----SLPKSFANLNKTRHFHMNNNSISGQIPPELS----RL---------PSLVHMLLDNNNLT-GYLP---PE 221 (728)
Q Consensus 163 ~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l---------~~L~~L~L~~N~l~-~~~~---~~ 221 (728)
+|.+.+ .+|..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++ ..++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 888876 4666777888888888888887644333332 22 56666666666665 2222 23
Q ss_pred CCCCCCCcEEEcccccCCCC----CCcccccCCCCCcEEEccCCcCc----cCCC-CCCCCCCcCEEEccCCCCc
Q 004822 222 LSELPKLLILQLDNNNFEGT----TIPASYSNMSKLLKLSLRNCSLQ----GPMP-DLSRIPNLGYLDLSSNQLN 287 (728)
Q Consensus 222 l~~l~~L~~L~L~~N~l~~~----~~p~~~~~l~~L~~L~L~~n~l~----~~~~-~l~~l~~L~~L~Ls~N~l~ 287 (728)
+..+++|++|++++|+++.. ..+..+..+++|+.|+|++|.++ ...+ .+..+++|+.|+|++|.++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 44455566666666555410 01224445555555555555553 1122 3444445555555555544
No 88
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=9.2e-22 Score=194.25 Aligned_cols=182 Identities=20% Similarity=0.207 Sum_probs=94.4
Q ss_pred CCCCCCcceEEcCCCCC---C-CCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEe
Q 004822 61 DPCTSNWTGVLCFNTTM---D-DGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLL 136 (728)
Q Consensus 61 ~~C~~~w~gv~C~~~~~---~-~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 136 (728)
+.|.|.|.++.|..... + .-..+++.|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+
T Consensus 3 ~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 3 SRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLN 82 (208)
T ss_dssp TTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEE
Confidence 46777899999965432 1 1123455555555555544444445555555555555555544444445555555555
Q ss_pred ccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCC
Q 004822 137 LNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG 216 (728)
Q Consensus 137 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 216 (728)
|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 55555554444444555555555555555554444445555555555555555554444444555555555555554432
Q ss_pred CCCcCCCCCCCCcEEEcccccCCCCCCcccccCC
Q 004822 217 YLPPELSELPKLLILQLDNNNFEGTTIPASYSNM 250 (728)
Q Consensus 217 ~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l 250 (728)
.+++|++|+++.|+++| .+|..++.+
T Consensus 163 -------~~~~l~~L~~~~n~~~g-~ip~~~~~l 188 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKHSG-VVRNSAGSV 188 (208)
T ss_dssp -------CTTTTHHHHHHHHHCTT-TBBCTTSSB
T ss_pred -------CCCCHHHHHHHHHhCCc-eeeccCccc
Confidence 22345555555555554 444444433
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1e-23 Score=229.11 Aligned_cols=242 Identities=19% Similarity=0.291 Sum_probs=152.0
Q ss_pred CCCccccCCCCCcEEeccCCcCCCc----CCccCCCCCCCCEEEeecc---CCCCCCcHhh-------hccCCCCEEEcc
Q 004822 121 SIPKEIGNIKSLELLLLNGNELTGS----LPEELGYLPKLDRIQIDQN---YISGSLPKSF-------ANLNKTRHFHMN 186 (728)
Q Consensus 121 ~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N---~l~~~~p~~~-------~~l~~L~~L~L~ 186 (728)
.++..+..+++|++|+|++|.++.. ++..+..+++|++|+|++| ++.+.+|..+ ..+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3455566677777777777777654 2334666777777777774 3334455444 566777777777
Q ss_pred Cccccc----ccccccCCCCCCcEEECcCCCCCCCCCcCCC----CC---------CCCcEEEcccccCCCCCCc---cc
Q 004822 187 NNSISG----QIPPELSRLPSLVHMLLDNNNLTGYLPPELS----EL---------PKLLILQLDNNNFEGTTIP---AS 246 (728)
Q Consensus 187 ~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~----~l---------~~L~~L~L~~N~l~~~~~p---~~ 246 (728)
+|.+.. .++..+..+++|++|+|++|.++...+..+. .+ ++|++|++++|+++...++ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 777765 3566666777777777777777533322222 22 6777777777777532344 34
Q ss_pred ccCCCCCcEEEccCCcCc--c---CCC-CCCCCCCcCEEEccCCCCc----ccCCCCCcc-CCccEEEccCCCCCCc---
Q 004822 247 YSNMSKLLKLSLRNCSLQ--G---PMP-DLSRIPNLGYLDLSSNQLN----GSIPPGRLS-LNITTIKLSNNKLTGT--- 312 (728)
Q Consensus 247 ~~~l~~L~~L~L~~n~l~--~---~~~-~l~~l~~L~~L~Ls~N~l~----~~ip~~~~~-~~L~~L~Ls~N~l~~~--- 312 (728)
+..+++|+.|++++|+++ + ..+ .+..+++|+.|+|++|.++ +.+|..+.. ++|+.|+|++|++++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 556677777777777776 2 233 5666777777777777774 344443222 5677777777777654
Q ss_pred -Cchhcc--CCccCceeecccccCcc----cCCcchhhhccCCCCCCcEEECcCCcCCCcC
Q 004822 313 -IPSNFS--GLPRLQRLFIANNSLSG----SIPSSIWQSRTLNATETFILDFQNNNLTNIS 366 (728)
Q Consensus 313 -~p~~~~--~l~~L~~L~L~~N~l~~----~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~ 366 (728)
++..+. .+++|+.|+|++|++++ .+|..+.. ++++|+.|++++|.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~----~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE----KMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHH----HCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHh----cCCCceEEEccCCcCCcch
Confidence 445553 36777777777777775 36665532 4567777777777777544
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=3.5e-21 Score=206.10 Aligned_cols=240 Identities=18% Similarity=0.187 Sum_probs=141.3
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCc-HhhhccCCCCE-EEcc
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLP-KSFANLNKTRH-FHMN 186 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~-L~L~ 186 (728)
++++.++++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|+|++|++.+.+| .+|.++++++. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56778888887 667665 3578888888888886555678888888888888888765444 45667776654 4555
Q ss_pred CcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEccc-ccCCCCCCcccccCCCCCcEEEccCCcCcc
Q 004822 187 NNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDN-NNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 187 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 265 (728)
.|++....|..|..+++|++|++++|+++...+..+....++..|++.+ |++.. ..+..|..+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~-l~~~~f~~~~-------------- 153 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHT-IERNSFVGLS-------------- 153 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCE-ECTTSSTTSB--------------
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccc-ccccchhhcc--------------
Confidence 6667666666666777777777777776655555555555566666644 33332 1112222222
Q ss_pred CCCCCCCCCCcCEEEccCCCCcccCCCCCcc-CCccEEEccC-CCCCCcCchhccCCccCceeecccccCcccCCcchhh
Q 004822 266 PMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-LNITTIKLSN-NKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQ 343 (728)
Q Consensus 266 ~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~ 343 (728)
..++.|++++|+++ .+|...+. .+++.|++++ |.++...+..|..+++|+.|+|++|+|+ .+|...
T Consensus 154 --------~~l~~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~-- 221 (350)
T 4ay9_X 154 --------FESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG-- 221 (350)
T ss_dssp --------SSCEEEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSS--
T ss_pred --------hhhhhhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhh--
Confidence 23555555555555 34443333 4566666653 4455444445666667777777777666 444432
Q ss_pred hccCCCCCCcEEECcC-CcCCCcCCCCCCCCceEEEcCCCc
Q 004822 344 SRTLNATETFILDFQN-NNLTNISGSFNIPPNVTVRLRGNP 383 (728)
Q Consensus 344 ~~~l~~~~L~~L~l~~-N~l~~~~~~~~~~~l~~l~l~~N~ 383 (728)
+.+|+.|.+.+ ++++.+|+-..+++++.+++..+.
T Consensus 222 -----~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 222 -----LENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257 (350)
T ss_dssp -----CTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSCHH
T ss_pred -----hccchHhhhccCCCcCcCCCchhCcChhhCcCCCCc
Confidence 23344444332 345555544456667777765443
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=3.8e-23 Score=220.02 Aligned_cols=250 Identities=18% Similarity=0.228 Sum_probs=188.1
Q ss_pred CCCCEEEccCCCCccCCCccccCC--CCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCC-CcHhhhccCCCCE
Q 004822 106 SYLTILDFMWNKISGSIPKEIGNI--KSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGS-LPKSFANLNKTRH 182 (728)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~ 182 (728)
..++.+|+++|.+. |..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34899999999887 5667777 8999999999999977665 56799999999999999866 8888999999999
Q ss_pred EEccCcccccccccccCCCCCCcEEECcCC-CCCCC-CCcCCCCCCCCcEEEcccc-cCCCCCCcccccCCC-CCcEEEc
Q 004822 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNN-NLTGY-LPPELSELPKLLILQLDNN-NFEGTTIPASYSNMS-KLLKLSL 258 (728)
Q Consensus 183 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~~~~l~~l~~L~~L~L~~N-~l~~~~~p~~~~~l~-~L~~L~L 258 (728)
|++++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++..++..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999998888888999999999999999 67753 5666778899999999999 887523577788888 9999999
Q ss_pred cCC--cCc-cCCC-CCCCCCCcCEEEccCCC-CcccCCCCCcc-CCccEEEccCCC-CCCcCchhccCCccCceeecccc
Q 004822 259 RNC--SLQ-GPMP-DLSRIPNLGYLDLSSNQ-LNGSIPPGRLS-LNITTIKLSNNK-LTGTIPSNFSGLPRLQRLFIANN 331 (728)
Q Consensus 259 ~~n--~l~-~~~~-~l~~l~~L~~L~Ls~N~-l~~~ip~~~~~-~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N 331 (728)
++| .++ +..+ .+..+++|+.|++++|. +++..+..+.. ++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 444 2222 45667888888888888 66544443322 678888888885 32222225677888888888877
Q ss_pred cCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCC
Q 004822 332 SLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISG 367 (728)
Q Consensus 332 ~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~ 367 (728)
++...-..+. ..+..|++++|+++++.+
T Consensus 283 -i~~~~~~~l~-------~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 283 -VPDGTLQLLK-------EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp -SCTTCHHHHH-------HHSTTSEESCCCSCCTTC
T ss_pred -cCHHHHHHHH-------hhCcceEEecccCccccC
Confidence 3321111111 224455677777776654
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.1e-21 Score=202.63 Aligned_cols=193 Identities=22% Similarity=0.351 Sum_probs=97.1
Q ss_pred cCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCE
Q 004822 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (728)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (728)
..+++|++|++++|.+.. +| .+..+++|++|++++|.+++..+ +..+++|++|+|++|.+++. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345566666666666653 33 35566666666666666653322 55556666666666555532 13444555555
Q ss_pred EEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCc
Q 004822 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCS 262 (728)
Q Consensus 183 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~ 262 (728)
|++++|.+.+. + .+..+++|++|++++|.+++ ++. +..+++|+.|++++|+
T Consensus 112 L~l~~n~l~~~-------------------------~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 112 LDLTSTQITDV-------------------------T-PLAGLSNLQVLYLDLNQITN--ISP-LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp EECTTSCCCCC-------------------------G-GGTTCTTCCEEECCSSCCCC--CGG-GGGCTTCCEEECCSSC
T ss_pred EECCCCCCCCc-------------------------h-hhcCCCCCCEEECCCCccCc--Ccc-ccCCCCccEEEccCCc
Confidence 55555544432 1 14444444444444444442 121 4444455555555555
Q ss_pred CccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCc
Q 004822 263 LQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 334 (728)
Q Consensus 263 l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 334 (728)
+++..+ +..+++|+.|++++|++++ ++.....++|+.|++++|++++.. .+..+++|+.|++++|+++
T Consensus 163 l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 163 VSDLTP-LANLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CCCChh-hcCCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 443332 4445555555555555542 221111145555555555555433 2556666666666666665
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=4.6e-21 Score=201.30 Aligned_cols=191 Identities=21% Similarity=0.368 Sum_probs=159.8
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+.+|+.|+++++++.. ++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+++. +.+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence 5689999999999975 33 68999999999999999996544 99999999999999999864 4699999999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
+++|.+++.. .+..+++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 114 l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 9999999753 38999999999999999986544 8889999999999999986433 8888999999999999875
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCc
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLN 287 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~ 287 (728)
++. +..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 188 --~~~-l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 --ISP-LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp --CGG-GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred --Chh-hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence 333 7778888888888888876553 666777777777777765
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=4.2e-21 Score=216.65 Aligned_cols=214 Identities=29% Similarity=0.375 Sum_probs=141.2
Q ss_pred CCC-CCCCCCC---CcceE-EcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCC
Q 004822 56 NWN-RGDPCTS---NWTGV-LCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIK 130 (728)
Q Consensus 56 ~w~-~~~~C~~---~w~gv-~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 130 (728)
+|. ..++|.. .|.|+ .|.. .+++.|++++|++++ +|..+. ++|++|+|++|+|+ .+| ..++
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~-------~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~ 100 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI-------NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPA 100 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH-------TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCT
T ss_pred HHhccCCccccccchhhhcccccc-------CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccC
Confidence 453 2367753 48898 6842 378999999999887 666663 78899999999888 566 4578
Q ss_pred CCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECc
Q 004822 131 SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLD 210 (728)
Q Consensus 131 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 210 (728)
+|++|+|++|.+++ +|. +.. +|++|+|++|.|++ +|. .+++|+.|+|++|.+++ +|. .+++|++|+|+
T Consensus 101 ~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 168 (571)
T 3cvr_A 101 SLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVR 168 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECC
T ss_pred CCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECC
Confidence 88888888888886 666 554 78888888888876 444 56777777777777765 443 45677777777
Q ss_pred CCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccC
Q 004822 211 NNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSI 290 (728)
Q Consensus 211 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~i 290 (728)
+|++++ +|. |. ++|+.|+|++|+|+ .+|. +.. +| ....+.|+.|+|++|+|+ .+
T Consensus 169 ~N~L~~-lp~-l~--~~L~~L~Ls~N~L~--~lp~-~~~--~L----------------~~~~~~L~~L~Ls~N~l~-~l 222 (571)
T 3cvr_A 169 NNQLTF-LPE-LP--ESLEALDVSTNLLE--SLPA-VPV--RN----------------HHSEETEIFFRCRENRIT-HI 222 (571)
T ss_dssp SSCCSC-CCC-CC--TTCCEEECCSSCCS--SCCC-CC--------------------------CCEEEECCSSCCC-CC
T ss_pred CCCCCC-cch-hh--CCCCEEECcCCCCC--chhh-HHH--hh----------------hcccccceEEecCCCcce-ec
Confidence 777765 444 44 66666666666665 3444 322 22 011122366666666666 45
Q ss_pred CCCCcc-CCccEEEccCCCCCCcCchhccCCc
Q 004822 291 PPGRLS-LNITTIKLSNNKLTGTIPSNFSGLP 321 (728)
Q Consensus 291 p~~~~~-~~L~~L~Ls~N~l~~~~p~~~~~l~ 321 (728)
|...+. ++|+.|+|++|++++.+|..+..++
T Consensus 223 p~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred CHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 654433 5677777777777777777666543
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.4e-20 Score=182.99 Aligned_cols=128 Identities=19% Similarity=0.228 Sum_probs=76.1
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCc
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (728)
+.++++++.++ .+|..+ .++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 46677777766 344433 346777777777777555555666777777777777666555555566666666666666
Q ss_pred ccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCC
Q 004822 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (728)
Q Consensus 189 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 239 (728)
.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|+++
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence 665544444555555555555555555444444455555555555555554
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=1.1e-19 Score=205.21 Aligned_cols=148 Identities=31% Similarity=0.388 Sum_probs=98.1
Q ss_pred cCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEE
Q 004822 177 LNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKL 256 (728)
Q Consensus 177 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L 256 (728)
+++|++|+|++|.+++ +|. +.. +|++|++++|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEE
Confidence 3445555555555443 333 332 55566666666554 333 45666666666666653 443 45667777
Q ss_pred EccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCccCCc-------cEEEccCCCCCCcCchhccCCccCceeecc
Q 004822 257 SLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLSLNI-------TTIKLSNNKLTGTIPSNFSGLPRLQRLFIA 329 (728)
Q Consensus 257 ~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 329 (728)
+|++|++++.++ +. ++|+.|+|++|+|+ .+|. +..+| +.|+|++|+|+ .+|..+..+++|+.|+|+
T Consensus 166 ~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~ 238 (571)
T 3cvr_A 166 SVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILE 238 (571)
T ss_dssp ECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECC
T ss_pred ECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEee
Confidence 777777666443 43 67788888888777 6666 33366 99999999999 577778789999999999
Q ss_pred cccCcccCCcchhhh
Q 004822 330 NNSLSGSIPSSIWQS 344 (728)
Q Consensus 330 ~N~l~~~ip~~~~~~ 344 (728)
+|+|++.+|..+..+
T Consensus 239 ~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 239 DNPLSSRIRESLSQQ 253 (571)
T ss_dssp SSSCCHHHHHHHHHH
T ss_pred CCcCCCcCHHHHHHh
Confidence 999999999888754
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.1e-19 Score=178.94 Aligned_cols=160 Identities=21% Similarity=0.234 Sum_probs=116.2
Q ss_pred CCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCC
Q 004822 61 DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (728)
Q Consensus 61 ~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 140 (728)
..|.|.|..+.|.+ ++++ .+|..+. ++|+.|+|++|++++..+..|..+++|++|+|++|
T Consensus 7 ~~C~C~~~~v~c~~-----------------~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N 66 (220)
T 2v9t_B 7 AACTCSNNIVDCRG-----------------KGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN 66 (220)
T ss_dssp TTSEEETTEEECTT-----------------SCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS
T ss_pred CCCEECCCEEEcCC-----------------CCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC
Confidence 45666677777743 3343 2344443 57888888888888777777888888888888888
Q ss_pred cCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCc
Q 004822 141 ELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPP 220 (728)
Q Consensus 141 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 220 (728)
++++..|+.|..+++|++|+|++|.|+...+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|++++..+.
T Consensus 67 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 67 QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 88877778888888888888888888766666677777777777777777777677777777777777777777766666
Q ss_pred CCCCCCCCcEEEcccccCCC
Q 004822 221 ELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 221 ~l~~l~~L~~L~L~~N~l~~ 240 (728)
.|..+++|+.|+|++|.+..
T Consensus 147 ~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTCTTCCEEECCSSCEEC
T ss_pred HHhCCCCCCEEEeCCCCcCC
Confidence 67777777777777776653
No 98
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.7e-22 Score=232.19 Aligned_cols=295 Identities=15% Similarity=0.087 Sum_probs=160.6
Q ss_pred eeEEECCCCC-Ccc-ccCccccCCCCCCEEEccCCCCccC----CCccccCCCCCcEEeccCCcCCC----cCCccCCCC
Q 004822 84 LRELQLLNLN-LSG-NLSPEIGRLSYLTILDFMWNKISGS----IPKEIGNIKSLELLLLNGNELTG----SLPEELGYL 153 (728)
Q Consensus 84 l~~L~l~~~~-l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l 153 (728)
|+.|+++++. ++. .++..+..+++|++|+|++|.+.+. ++..+..+++|++|++++|.+++ .++..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 6666666654 111 1112223566666666666665544 22233455666666666666652 223334455
Q ss_pred CCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcc--------------------------cccccccccCCCCCCcEE
Q 004822 154 PKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS--------------------------ISGQIPPELSRLPSLVHM 207 (728)
Q Consensus 154 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--------------------------l~~~~p~~~~~l~~L~~L 207 (728)
++|++|++++|.+.+ +|..+.++++|++|+++.+. ....+|..+..+++|++|
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL 298 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence 666666666666553 44555555555555554211 112345556667788888
Q ss_pred ECcCCCCCCCCC-cCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccC-----------CcCccCCC--CCCCC
Q 004822 208 LLDNNNLTGYLP-PELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRN-----------CSLQGPMP--DLSRI 273 (728)
Q Consensus 208 ~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~-----------n~l~~~~~--~l~~l 273 (728)
++++|.+++... ..+..+++|+.|+++ +.+....++.....+++|++|++++ |.+++... ....+
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 888877654332 234667777777777 4343223344445677777777772 44443211 12345
Q ss_pred CCcCEEEccCCCCcccCCCCCc--cCCccEEEcc----CCCCCCc-----CchhccCCccCceeecccc--cCcccCCcc
Q 004822 274 PNLGYLDLSSNQLNGSIPPGRL--SLNITTIKLS----NNKLTGT-----IPSNFSGLPRLQRLFIANN--SLSGSIPSS 340 (728)
Q Consensus 274 ~~L~~L~Ls~N~l~~~ip~~~~--~~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~L~L~~N--~l~~~ip~~ 340 (728)
++|++|+++.|.+++..+.... .++|+.|+++ .|.+++. ++..+..+++|+.|+++.| .+++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 6777777777776654332221 1467777774 5566653 3333555667777777532 355544444
Q ss_pred hhhhccCCCCCCcEEECcCCcCCCcC--CC-CCCCCceEEEcCCCcC
Q 004822 341 IWQSRTLNATETFILDFQNNNLTNIS--GS-FNIPPNVTVRLRGNPF 384 (728)
Q Consensus 341 ~~~~~~l~~~~L~~L~l~~N~l~~~~--~~-~~~~~l~~l~l~~N~~ 384 (728)
+.. .+++|+.|++++|++++.. .. ..+++++.|++++|++
T Consensus 458 ~~~----~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 458 IGQ----YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp HHH----SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred HHH----hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 432 3566667777766665421 11 1345666667766665
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=4.8e-19 Score=177.45 Aligned_cols=160 Identities=22% Similarity=0.282 Sum_probs=122.0
Q ss_pred CCCCCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEec
Q 004822 58 NRGDPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLL 137 (728)
Q Consensus 58 ~~~~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 137 (728)
.....| .|.+|.|... ++. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|
T Consensus 14 ~~~~~C--s~~~v~c~~~-----------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 71 (229)
T 3e6j_A 14 PSQCSC--SGTTVDCRSK-----------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYL 71 (229)
T ss_dssp CTTCEE--ETTEEECTTS-----------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEE--eCCEeEccCC-----------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEEC
Confidence 333556 6999999543 222 3343332 77888888888888877888888888888888
Q ss_pred cCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCC
Q 004822 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY 217 (728)
Q Consensus 138 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 217 (728)
++|+++...+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++. .+|..+..+++|++|+|++|++++.
T Consensus 72 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 72 GSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCcc
Confidence 888887666667788888888888888888777777788888888888888887 5677777788888888888888766
Q ss_pred CCcCCCCCCCCcEEEcccccCCC
Q 004822 218 LPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 218 ~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
.+..|..+++|+.|++++|.+.+
T Consensus 151 ~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 151 PHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTTTTTCTTCCEEECTTSCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCCccC
Confidence 66667777888888888887765
No 100
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=4.9e-19 Score=176.21 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=123.4
Q ss_pred EEECCCCCCccccCccccCCCCCCEEEccCCCCccCCC-ccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeecc
Q 004822 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIP-KEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (728)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 164 (728)
.++++++.++. +|..+. ..+++|+|++|++++..| ..|..+++|++|+|++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 45556666653 555553 356889999999987755 45788899999999999998877778888999999999999
Q ss_pred CCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
.+++..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.+.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9988888888888888888888888888878888888888888888888887778888888888888888888765
No 101
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=5.5e-21 Score=219.48 Aligned_cols=300 Identities=12% Similarity=0.114 Sum_probs=202.2
Q ss_pred CcceeEEECCCCCCccc----cCccccCCCCCCEEEccCCCCcc----CCCccccCCCCCcEEeccCCcCCCcCCc----
Q 004822 81 YLHLRELQLLNLNLSGN----LSPEIGRLSYLTILDFMWNKISG----SIPKEIGNIKSLELLLLNGNELTGSLPE---- 148 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~---- 148 (728)
+++|+.|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ +|.
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 35677777777776544 22334566777777777777752 233334566777777777776653 333
Q ss_pred -----------------------cCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccc-cccCCCCCC
Q 004822 149 -----------------------ELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIP-PELSRLPSL 204 (728)
Q Consensus 149 -----------------------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L 204 (728)
.+..+++|+.|+++++. ...+|..+..+++|++|+|++|.+++... ..+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 34445555555555532 33567788889999999999999765433 446889999
Q ss_pred cEEECcCCCCCC-CCCcCCCCCCCCcEEEcc-----------cccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCC
Q 004822 205 VHMLLDNNNLTG-YLPPELSELPKLLILQLD-----------NNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLS 271 (728)
Q Consensus 205 ~~L~L~~N~l~~-~~~~~l~~l~~L~~L~L~-----------~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~ 271 (728)
++|+++ +.+.. .++..+..+++|++|+++ .|.+++..++.....+++|++|+++.|.+++..+ .+.
T Consensus 321 ~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 321 EVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 999999 44432 333334567899999999 3566542234445668999999999998886544 333
Q ss_pred -CCCCcCEEEcc----CCCCccc-----CCCCCc-cCCccEEEccCC--CCCCcCchhcc-CCccCceeecccccCcccC
Q 004822 272 -RIPNLGYLDLS----SNQLNGS-----IPPGRL-SLNITTIKLSNN--KLTGTIPSNFS-GLPRLQRLFIANNSLSGSI 337 (728)
Q Consensus 272 -~l~~L~~L~Ls----~N~l~~~-----ip~~~~-~~~L~~L~Ls~N--~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~i 337 (728)
.+++|+.|+++ .|.+++. ++.... .++|+.|++++| .+++..+..+. .+++|+.|++++|++++..
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 37899999996 6677742 111111 268999999854 37765555554 4889999999999998643
Q ss_pred CcchhhhccCCCCCCcEEECcCCcCCCcC-CCC--CCCCceEEEcCCCcCCCC
Q 004822 338 PSSIWQSRTLNATETFILDFQNNNLTNIS-GSF--NIPPNVTVRLRGNPFCLN 387 (728)
Q Consensus 338 p~~~~~~~~l~~~~L~~L~l~~N~l~~~~-~~~--~~~~l~~l~l~~N~~~~~ 387 (728)
...+.. .+++|+.|++++|.+++.. +.+ .+++++.|++++|+++..
T Consensus 480 ~~~~~~----~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 480 LMEFSR----GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHT----CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHh----cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 333321 6789999999999987532 211 478899999999997644
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=2.2e-18 Score=171.48 Aligned_cols=152 Identities=21% Similarity=0.314 Sum_probs=107.9
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCc
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (728)
+.+++++++++ .+|..+. ++|++|+|++|++++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 56888888887 5666554 67888888888888777777888888888888888888777777777777777777777
Q ss_pred ccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCc
Q 004822 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (728)
Q Consensus 189 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 264 (728)
.++...+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++ ..+..+..+++|+.|+|++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcC
Confidence 7776555556777777777777777776666666667777777777776664 33344555555555555555544
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1e-18 Score=187.74 Aligned_cols=175 Identities=21% Similarity=0.274 Sum_probs=118.0
Q ss_pred EEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCcccc-CCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeecc
Q 004822 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIG-NIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (728)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 164 (728)
.+++++++++. +|..+. +.++.|+|++|++++..+..|. ++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 44555566653 454443 3578888888888877777776 7888888888888888777777888888888888888
Q ss_pred CCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCC---CCCCCCcEEEcccccCCCC
Q 004822 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPEL---SELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~~~ 241 (728)
+|++..+..|.++++|++|+|++|.+.+..|..|..+++|++|+|++|++++..+..| ..+++|+.|+|++|+|+.
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 177 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK- 177 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC-
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc-
Confidence 8877777777777788888888877777667777777777777777777775443334 456667777777776664
Q ss_pred CCcccccCCCCC--cEEEccCCcCc
Q 004822 242 TIPASYSNMSKL--LKLSLRNCSLQ 264 (728)
Q Consensus 242 ~~p~~~~~l~~L--~~L~L~~n~l~ 264 (728)
..+..+..++.+ +.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 222344444432 44444444443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2e-18 Score=179.59 Aligned_cols=169 Identities=29% Similarity=0.391 Sum_probs=84.7
Q ss_pred CCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEE
Q 004822 105 LSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFH 184 (728)
Q Consensus 105 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 184 (728)
+++|+.|++++|.+... + .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 34444444444444422 2 24444444444444444443222 44444455555555444431 1244455555555
Q ss_pred ccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCc
Q 004822 185 MNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (728)
Q Consensus 185 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 264 (728)
+++|++.+. ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++ ++. +..+++|+.|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~--~~~-l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc--chh-hcCCCccCEEECCCCcCC
Confidence 555554432 2344555555555555555533 345555556666666665553 222 555666666666666665
Q ss_pred cCCCCCCCCCCcCEEEccCCCCc
Q 004822 265 GPMPDLSRIPNLGYLDLSSNQLN 287 (728)
Q Consensus 265 ~~~~~l~~l~~L~~L~Ls~N~l~ 287 (728)
+. +.+..+++|+.|++++|+++
T Consensus 192 ~l-~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 DL-RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp BC-GGGTTCTTCSEEEEEEEEEE
T ss_pred CC-hhhccCCCCCEEECcCCccc
Confidence 43 23556666666666666665
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=171.36 Aligned_cols=153 Identities=22% Similarity=0.289 Sum_probs=107.4
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCC-ccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccC
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLP-EELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (728)
+.+++++|.++ .+|..+. ..+++|+|++|++++..+ ..|..+++|++|+|++|.|++..+..|.++++|++|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888887 4666553 456788888888886644 3467778888888888888777777777777777777777
Q ss_pred cccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCcc
Q 004822 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 265 (728)
|.+++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++|++++ ..|..|..+++|+.|++++|.+.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT-VAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE-ECHHHhcCCCCCCEEEecCcCCcC
Confidence 77777666667777777777777777776666667777777777777777664 345555555555555555555543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=7.2e-19 Score=188.89 Aligned_cols=181 Identities=22% Similarity=0.182 Sum_probs=158.0
Q ss_pred CCCCCCCcceEEcCCCCC---CCC-CcceeEEECCCCCCccccCcccc-CCCCCCEEEccCCCCccCCCccccCCCCCcE
Q 004822 60 GDPCTSNWTGVLCFNTTM---DDG-YLHLRELQLLNLNLSGNLSPEIG-RLSYLTILDFMWNKISGSIPKEIGNIKSLEL 134 (728)
Q Consensus 60 ~~~C~~~w~gv~C~~~~~---~~~-~~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 134 (728)
...|.|.+..+.|.+..+ +.. ...++.|+|++|++++..+..+. ++++|++|+|++|+|++..|..|.++++|++
T Consensus 13 p~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 92 (361)
T 2xot_A 13 PANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY 92 (361)
T ss_dssp CTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence 345777899999976542 322 34589999999999988888887 9999999999999999888889999999999
Q ss_pred EeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCccccccccccc---CCCCCCcEEECcC
Q 004822 135 LLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPEL---SRLPSLVHMLLDN 211 (728)
Q Consensus 135 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~L~~ 211 (728)
|+|++|+++...+..|..+++|++|+|++|+|++..|..|.++++|++|+|++|.++...+..| ..+++|++|+|++
T Consensus 93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence 9999999998888889999999999999999999999999999999999999999997666566 5799999999999
Q ss_pred CCCCCCCCcCCCCCCC--CcEEEcccccCCC
Q 004822 212 NNLTGYLPPELSELPK--LLILQLDNNNFEG 240 (728)
Q Consensus 212 N~l~~~~~~~l~~l~~--L~~L~L~~N~l~~ 240 (728)
|+++...+..+..++. ++.|+|++|.+..
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 9999766677777876 4899999999874
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=1.2e-18 Score=181.12 Aligned_cols=169 Identities=26% Similarity=0.355 Sum_probs=89.8
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
.+|+.|+++++.+... +.+..+++|++|+|++|++++..+ +.++++|++|++++|.+++ + +.+..+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEEC
Confidence 4455555555555432 235555555555555555554322 5555555555555555553 2 22555555555555
Q ss_pred eccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCC
Q 004822 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 241 (728)
++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.+++
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence 55555543 3455555555555555555543 345555555555555555554332 5555555555555555543
Q ss_pred CCcccccCCCCCcEEEccCCcCcc
Q 004822 242 TIPASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 242 ~~p~~~~~l~~L~~L~L~~n~l~~ 265 (728)
++ .+..+++|+.|++++|+++.
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -Ch-hhccCCCCCEEECcCCcccC
Confidence 22 25555555555555555543
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=6.1e-20 Score=214.58 Aligned_cols=189 Identities=19% Similarity=0.199 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHhCCCCC-CCCCCCCCC-CCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEE
Q 004822 34 PIEVSALRSIKKSLVDDY-SKLSNWNRG-DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTIL 111 (728)
Q Consensus 34 ~~~~~~l~~~~~~~~~~~-~~l~~w~~~-~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L 111 (728)
..++++|+++........ ..-..|... .++. .|.++.+.. ++++.|+|.++++... +.. .|+.+
T Consensus 131 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-------~~~~~l~L~~n~~~~~-~~~-----~l~~l 196 (727)
T 4b8c_D 131 DCTKQALMEMADTLTDSKTAKKQQPTGDSTPSG-TATNSAVST-------PLTPKIELFANGKDEA-NQA-----LLQHK 196 (727)
T ss_dssp -CCCHHHHHHHHHHHHHHTTC-----------------------------------------------------------
T ss_pred ccchhhhhhhhhhcccccCcccCCCcCCCCccc-cCCCceecC-------CccceEEeeCCCCCcc-hhh-----HhhcC
Confidence 345678888887764221 122346433 3333 588877743 5788999988888753 322 24445
Q ss_pred EccCCCCcc---------CCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCE
Q 004822 112 DFMWNKISG---------SIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (728)
Q Consensus 112 ~Ls~n~l~~---------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (728)
+|++|.|.+ ..|..|..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..|.++++|++
T Consensus 197 ~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 274 (727)
T 4b8c_D 197 KLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRV 274 (727)
T ss_dssp -------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCE
T ss_pred ccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCE
Confidence 555554442 33444555555555555555555 44444445555555555555555 44455555555555
Q ss_pred EEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 183 FHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 183 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.+++
T Consensus 275 L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 275 LDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCC
Confidence 555555554 34444555555555555555554 344445555555555555555544
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=9.2e-18 Score=168.09 Aligned_cols=127 Identities=24% Similarity=0.341 Sum_probs=78.0
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCc
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (728)
+.++++++++. .+|..+. ++|++|+|++|.+++..|..|..+++|++|+|++|+|....+..|..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 55777777776 5555443 67777777777777666777777777777777777776555555666666666666666
Q ss_pred ccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCC
Q 004822 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFE 239 (728)
Q Consensus 189 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 239 (728)
++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|+++
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~ 148 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK 148 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC
Confidence 665544444555555555555555555 34444445555555555555544
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.6e-18 Score=194.76 Aligned_cols=171 Identities=26% Similarity=0.349 Sum_probs=115.0
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+.+|+.|+++++.+... +.+..+++|+.|+|++|++.+..| +..+++|++|+|++|.+++ +| .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 35677777777777543 257777777777777777775443 6777777777777777764 22 567777777777
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
|++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|++++
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC
Confidence 777777653 3466777777777777777654 456667777777777777765444 6667777777777777654
Q ss_pred CCCcccccCCCCCcEEEccCCcCccC
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGP 266 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~ 266 (728)
+ ..+..+++|+.|+|++|.+.+.
T Consensus 190 --l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 190 --L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp --C-GGGTTCTTCSEEECCSEEEECC
T ss_pred --C-hHHccCCCCCEEEccCCcCcCC
Confidence 2 2466666677777777666653
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=2.6e-18 Score=195.95 Aligned_cols=190 Identities=27% Similarity=0.368 Sum_probs=126.3
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
..+..+.+..+.+....+ +..+++|+.|++++|.+.. +| .+..+++|+.|+|++|.+++..| +..+++|+.|+|
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 345555666666654432 4567777777888777763 33 47777777777777777775544 677777777777
Q ss_pred eccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCC
Q 004822 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 241 (728)
++|.+.+. | .+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.+++
T Consensus 95 s~N~l~~l-~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~- 167 (605)
T 1m9s_A 95 DENKIKDL-S-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD- 167 (605)
T ss_dssp CSSCCCCC-T-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC-
T ss_pred cCCCCCCC-h-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC-
Confidence 77777652 2 566777777777777777643 3466677777777777777654 456667777777777777764
Q ss_pred CCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCc
Q 004822 242 TIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLN 287 (728)
Q Consensus 242 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~ 287 (728)
..| +..+++|+.|+|++|.+++. +.+..+++|+.|+|++|++.
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEE
T ss_pred chh--hccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCc
Confidence 223 66677777777777776654 45666666777777766665
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=9.6e-18 Score=163.83 Aligned_cols=149 Identities=21% Similarity=0.283 Sum_probs=72.8
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
.+++.|++++|.++ .++ .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 44555555555555 233 4555555555555555443 2224555555555555555555444555555555555555
Q ss_pred eccCCCCCCcHhhhccCCCCEEEccCcc-cccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccC
Q 004822 162 DQNYISGSLPKSFANLNKTRHFHMNNNS-ISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNF 238 (728)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 238 (728)
++|.+++..|..+..+++|++|++++|. +. .+| .+..+++|++|++++|++++. + .+..+++|+.|++++|++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 5555554445555555555555555554 22 222 344444444444444444431 1 344444444444444444
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.6e-17 Score=162.24 Aligned_cols=155 Identities=17% Similarity=0.249 Sum_probs=136.3
Q ss_pred ccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCC
Q 004822 102 IGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTR 181 (728)
Q Consensus 102 ~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 181 (728)
.+.+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 366789999999999999 566 6999999999999999775 345789999999999999999988889999999999
Q ss_pred EEEccCcccccccccccCCCCCCcEEECcCCC-CCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccC
Q 004822 182 HFHMNNNSISGQIPPELSRLPSLVHMLLDNNN-LTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRN 260 (728)
Q Consensus 182 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~ 260 (728)
+|++++|.+.+..+..+..+++|++|++++|+ ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~--~~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD--YR-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC--CT-TGGGCSSCCEEEECB
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC--hH-HhccCCCCCEEEeeC
Confidence 99999999998888999999999999999998 66 455 68999999999999999985 44 788999999999999
Q ss_pred CcCcc
Q 004822 261 CSLQG 265 (728)
Q Consensus 261 n~l~~ 265 (728)
|++.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 99864
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=2.2e-18 Score=176.46 Aligned_cols=149 Identities=23% Similarity=0.390 Sum_probs=72.9
Q ss_pred ccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCc
Q 004822 126 IGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLV 205 (728)
Q Consensus 126 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 205 (728)
+..+++|++|++++|.++ .++ .+..+++|++|+|++|++++..+ +.++++|++|+|++|++++. |. +.. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l-~~-~~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNL-NG-IPS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCC-TT-CCC-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCc-Cc-ccc-Cccc
Confidence 334444444444444443 222 33444444444444444443322 44444444444444444432 11 111 5555
Q ss_pred EEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCC
Q 004822 206 HMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQ 285 (728)
Q Consensus 206 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~ 285 (728)
+|++++|++++. +.+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++++. +.+..+++|+.|++++|.
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~--~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS--IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB--CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCC--Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCc
Confidence 555555555532 235555556666666665553 22 455556666666666666554 445556666666666666
Q ss_pred Cc
Q 004822 286 LN 287 (728)
Q Consensus 286 l~ 287 (728)
++
T Consensus 184 ~~ 185 (263)
T 1xeu_A 184 CV 185 (263)
T ss_dssp EE
T ss_pred cc
Confidence 55
No 115
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.71 E-value=8.7e-20 Score=209.53 Aligned_cols=247 Identities=14% Similarity=0.140 Sum_probs=148.2
Q ss_pred CcceeEEECCCCCCccccCcccc-CCCCCCEEEccCC-CCccC-CCccccCCCCCcEEeccCCcCCCcCCcc----CCCC
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIG-RLSYLTILDFMWN-KISGS-IPKEIGNIKSLELLLLNGNELTGSLPEE----LGYL 153 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l 153 (728)
+++|+.|+++++.+++..+..+. .+++|++|+|++| .+... ++..+.++++|++|+|++|.+++..+.. ...+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 35789999999988877666665 6889999999988 45432 3444457889999999999877654433 3467
Q ss_pred CCCCEEEeeccCCCCCCcHh----hhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCC----------------
Q 004822 154 PKLDRIQIDQNYISGSLPKS----FANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNN---------------- 213 (728)
Q Consensus 154 ~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~---------------- 213 (728)
++|++|++++|. ....... +.++++|++|++++|...+.++..+..+++|++|+++.+.
T Consensus 184 ~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 789999998887 2222222 3456889999998883222356666666777777655442
Q ss_pred ----------CCC----CCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccC-CC-CCCCCCCcC
Q 004822 214 ----------LTG----YLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGP-MP-DLSRIPNLG 277 (728)
Q Consensus 214 ----------l~~----~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~~-~l~~l~~L~ 277 (728)
+.. .++..+..+++|+.|++++|.+++..+...+..+++|+.|++++| ++.. .+ ....+++|+
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 111 122222245778888888887654223334567777888887777 3311 11 112356666
Q ss_pred EEEccC---------CCCcccCCCCCc--cCCccEEEccCCCCCCcCchhcc-CCccCceeecc
Q 004822 278 YLDLSS---------NQLNGSIPPGRL--SLNITTIKLSNNKLTGTIPSNFS-GLPRLQRLFIA 329 (728)
Q Consensus 278 ~L~Ls~---------N~l~~~ip~~~~--~~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~ 329 (728)
+|++++ +.+++....... .++|+.|+++.|.+++..+..+. .+++|+.|+++
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 666632 333321110000 14566666666666544444443 35566666665
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=1.4e-17 Score=170.51 Aligned_cols=171 Identities=19% Similarity=0.223 Sum_probs=144.0
Q ss_pred CcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
+.+++.+++.++.+++.. .+..+++|++|++++|++. .+| .+..+++|++|+|++|++++..+ +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 456777888888887543 6788999999999999998 455 68899999999999999996554 89999999999
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
|++|++++..+ +.. ++|++|++++|++++. ..+..+++|++|++++|++++. + .+..+++|+.|++++|++++
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 99999986433 233 8999999999999864 3588999999999999999864 3 68899999999999999986
Q ss_pred CCCcccccCCCCCcEEEccCCcCccCC
Q 004822 241 TTIPASYSNMSKLLKLSLRNCSLQGPM 267 (728)
Q Consensus 241 ~~~p~~~~~l~~L~~L~L~~n~l~~~~ 267 (728)
. ..+..+++|+.|++++|++++.+
T Consensus 165 ~---~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 165 T---GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp C---TTSTTCCCCCEEEEEEEEEECCC
T ss_pred h---HHhccCCCCCEEeCCCCcccCCc
Confidence 2 67889999999999999998653
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=2.4e-19 Score=203.29 Aligned_cols=189 Identities=21% Similarity=0.246 Sum_probs=98.3
Q ss_pred CCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcc-------------cccccccccCCCCCCcEEE-CcCCCCCC
Q 004822 151 GYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS-------------ISGQIPPELSRLPSLVHML-LDNNNLTG 216 (728)
Q Consensus 151 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~ 216 (728)
...++|+.|+|++|+++ .+|..++++++|+.|++++|. +.+.+|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45566666666666665 456666666666666665554 3344555555566666665 4444321
Q ss_pred CCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc
Q 004822 217 YLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS 296 (728)
Q Consensus 217 ~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~ 296 (728)
+|+.+.+++|.++. ++. ..|+.|+|++|++++.+ .+..+++|+.|+|++|.++ .+|..+..
T Consensus 424 ----------~L~~l~l~~n~i~~--l~~-----~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 484 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK--MEY-----ADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAA 484 (567)
T ss_dssp ----------HHHHHHHHHHHHHH--HHH-----TTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGG
T ss_pred ----------hhhhhhhhcccccc--cCc-----cCceEEEecCCCCCCCc-CccccccCcEeecCccccc-ccchhhhc
Confidence 23333333333321 111 12455555555555432 3455555555555555555 44443222
Q ss_pred -CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccC-CcchhhhccCCCCCCcEEECcCCcCCCcCC
Q 004822 297 -LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSI-PSSIWQSRTLNATETFILDFQNNNLTNISG 367 (728)
Q Consensus 297 -~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i-p~~~~~~~~l~~~~L~~L~l~~N~l~~~~~ 367 (728)
++|+.|+|++|+|++ +| .+..+++|+.|+|++|+|++.. |..+. .+++|+.|+|++|+++++++
T Consensus 485 l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~-----~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLV-----SCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGG-----GCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHh-----cCCCCCEEEecCCcCCCCcc
Confidence 455555555555554 33 5555556666666666655544 55555 45555566666666555544
No 118
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=99.68 E-value=5e-17 Score=171.10 Aligned_cols=91 Identities=30% Similarity=0.551 Sum_probs=81.5
Q ss_pred CCcccCCceeccCceEEEEEEeC------CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
++|...++||+|+||+||+|++. +++.||||+++.......++|.+|+++|++++|||||+++|+|.+.+..+|
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 120 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLM 120 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence 35666788999999999999864 377899999987766667789999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhcC
Q 004822 698 VYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~ 714 (728)
|||||++|+|.++|+..
T Consensus 121 V~Ey~~~G~L~~~l~~~ 137 (329)
T 4aoj_A 121 VFEYMRHGDLNRFLRSH 137 (329)
T ss_dssp EEECCTTCBHHHHHHTS
T ss_pred EEEcCCCCcHHHHHHhc
Confidence 99999999999999864
No 119
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=99.68 E-value=4e-17 Score=169.51 Aligned_cols=91 Identities=31% Similarity=0.562 Sum_probs=79.6
Q ss_pred CCcccCCceeccCceEEEEEEeC------CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
++|...+.||+|+||+||+|++. ++..||||+++.......++|.+|+++|++++|||||+++|+|.+++..+|
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence 45667789999999999999864 367899999987766667789999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhcC
Q 004822 698 VYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~ 714 (728)
|||||++|+|.++|+..
T Consensus 93 V~Ey~~~G~L~~~l~~~ 109 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAH 109 (299)
T ss_dssp EEECCTTCBHHHHHHHT
T ss_pred EEEcCCCCcHHHHHHhc
Confidence 99999999999999864
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=7.1e-18 Score=197.12 Aligned_cols=185 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred CCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEc
Q 004822 106 SYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHM 185 (728)
Q Consensus 106 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 185 (728)
+.++.|+|.+|.+.. .|..+ |+.++|+.|.+.+ +++..|.+. ..++.|..+.+|+.|+|
T Consensus 173 ~~~~~l~L~~n~~~~-~~~~~-----l~~l~Ls~~~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~L 231 (727)
T 4b8c_D 173 PLTPKIELFANGKDE-ANQAL-----LQHKKLSQYSIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDL 231 (727)
T ss_dssp ----------------------------------------------------------------------CCCCCCEEEC
T ss_pred CccceEEeeCCCCCc-chhhH-----hhcCccCcccccC--------------cccccccee-cChhhhccCCCCcEEEC
Confidence 457777887777774 33322 4444455444432 122333333 34455555555555555
Q ss_pred cCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCcc
Q 004822 186 NNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 186 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 265 (728)
++|.+. .+|..+..+++|++|+|++|+|+ .+|..|+.+++|++|+|++|.|+ .+|..+.++++|++|+|++|.++.
T Consensus 232 s~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~ 307 (727)
T 4b8c_D 232 SNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVTT 307 (727)
T ss_dssp TTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCCC
T ss_pred CCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCCc
Confidence 555555 34444445556666666666655 45555556666666666666665 345555666666666666666554
Q ss_pred CCCCCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccCCCCCCcCch
Q 004822 266 PMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTIPS 315 (728)
Q Consensus 266 ~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~N~l~~~~p~ 315 (728)
.+..+..+++|+.|+|++|.+++.+|..+.. .....|+|++|.+++.+|.
T Consensus 308 lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 308 LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 3335556666666666666666555443222 1122345555555555543
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=1.4e-16 Score=154.89 Aligned_cols=127 Identities=23% Similarity=0.290 Sum_probs=72.4
Q ss_pred EEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCc-cccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeecc
Q 004822 86 ELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPK-EIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (728)
Q Consensus 86 ~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 164 (728)
.+++++++++ .+|..+.. +|++|++++|++.+..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|
T Consensus 12 ~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 3344445553 34444432 666777777766655443 3666666666666666666666666666666666666666
Q ss_pred CCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCC
Q 004822 165 YISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (728)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (728)
+|++..+..|.++++|++|+|++|++++..|..|..+++|++|++++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 666555555555555555555555555555555555555555555555544
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=4.1e-19 Score=201.38 Aligned_cols=195 Identities=24% Similarity=0.278 Sum_probs=152.3
Q ss_pred cCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCc-------------CCCcCCccCCCCCCCCEEE-eeccCCCC
Q 004822 103 GRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNE-------------LTGSLPEELGYLPKLDRIQ-IDQNYISG 168 (728)
Q Consensus 103 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~ 168 (728)
..+++|+.|+|++|++. .+|..++++++|+.|++++|. +.+..|+.++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 56788888999999887 678888888889988887765 5667777788888888888 56654432
Q ss_pred CCcH-----hhhc--cCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCC
Q 004822 169 SLPK-----SFAN--LNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 169 ~~p~-----~~~~--l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 241 (728)
.... .+.. ...|+.|+|++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.+++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~- 500 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN- 500 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-
Confidence 1100 1111 2368899999999986 565 888999999999999998 778889999999999999999985
Q ss_pred CCcccccCCCCCcEEEccCCcCccCC-C-CCCCCCCcCEEEccCCCCcccCCCCCc----cCCccEEEc
Q 004822 242 TIPASYSNMSKLLKLSLRNCSLQGPM-P-DLSRIPNLGYLDLSSNQLNGSIPPGRL----SLNITTIKL 304 (728)
Q Consensus 242 ~~p~~~~~l~~L~~L~L~~n~l~~~~-~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~----~~~L~~L~L 304 (728)
+| .+..+++|+.|+|++|++++.. | .+..+++|+.|+|++|++++..|.... .++|+.|++
T Consensus 501 -lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 501 -VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp -CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred -Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 56 7889999999999999999885 5 788899999999999999865553311 167888864
No 123
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.68 E-value=3.9e-19 Score=204.10 Aligned_cols=298 Identities=16% Similarity=0.140 Sum_probs=177.6
Q ss_pred CcceeEEECCCC-CCccc-cCccccCCCCCCEEEccCCCCccCCCcccc----CCCCCcEEeccCCc--CCC-cCCccCC
Q 004822 81 YLHLRELQLLNL-NLSGN-LSPEIGRLSYLTILDFMWNKISGSIPKEIG----NIKSLELLLLNGNE--LTG-SLPEELG 151 (728)
Q Consensus 81 ~~~l~~L~l~~~-~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~----~l~~L~~L~L~~N~--l~~-~~p~~~~ 151 (728)
+++|+.|++.++ .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|++|++++|. +.. .++..+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 578999999988 55443 334445789999999999998765554443 67799999999887 221 1112234
Q ss_pred CCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcc--------------------------cc----cccccccCCC
Q 004822 152 YLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNS--------------------------IS----GQIPPELSRL 201 (728)
Q Consensus 152 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~--------------------------l~----~~~p~~~~~l 201 (728)
.+++|++|++++|...+.++..+.++++|++|+++.+. +. ..++..+..+
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 56899999999883333366777777788888755442 11 1123333356
Q ss_pred CCCcEEECcCCCCCCCC-CcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccC---------CcCccCCC-CC
Q 004822 202 PSLVHMLLDNNNLTGYL-PPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRN---------CSLQGPMP-DL 270 (728)
Q Consensus 202 ~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~---------n~l~~~~~-~l 270 (728)
++|++|++++|.+++.. ...+..+++|+.|++++| ++...++.....+++|++|++.+ +.+++... .+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l 367 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV 367 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH
Confidence 88888898888876432 222457788888888877 43212233334577788887733 33332111 11
Q ss_pred -CCCCCcCEEEccCCCCcccCCCCCc--cCCccEEEcc--C----CCCCCc-----CchhccCCccCceeecccccCccc
Q 004822 271 -SRIPNLGYLDLSSNQLNGSIPPGRL--SLNITTIKLS--N----NKLTGT-----IPSNFSGLPRLQRLFIANNSLSGS 336 (728)
Q Consensus 271 -~~l~~L~~L~Ls~N~l~~~ip~~~~--~~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~ 336 (728)
..+++|+.|+++.|.+++..+.... .++|+.|+++ + |.++.. ++..+..+++|+.|++++ .+++.
T Consensus 368 ~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 368 SMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp HHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred HHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHH
Confidence 2356777777777766643322211 1567777777 3 445422 112245566677777755 55544
Q ss_pred CCcchhhhccCCCCCCcEEECcCCcCCCcCC-CC--CCCCceEEEcCCCcC
Q 004822 337 IPSSIWQSRTLNATETFILDFQNNNLTNISG-SF--NIPPNVTVRLRGNPF 384 (728)
Q Consensus 337 ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~-~~--~~~~l~~l~l~~N~~ 384 (728)
.+..+.. .+++|+.|++++|.+++... .+ .+++++.|++++|++
T Consensus 447 ~~~~l~~----~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 447 VFEYIGT----YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp HHHHHHH----HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred HHHHHHH----hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 4444432 24566677777766654321 11 255666677766665
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=3e-16 Score=148.90 Aligned_cols=134 Identities=23% Similarity=0.239 Sum_probs=108.1
Q ss_pred CCCCCCEEEccCCCCc-cCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCE
Q 004822 104 RLSYLTILDFMWNKIS-GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRH 182 (728)
Q Consensus 104 ~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 182 (728)
..++|++|++++|++. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3477888899888887 67788888888999999999988865 77888899999999999998878888888889999
Q ss_pred EEccCccccccc-ccccCCCCCCcEEECcCCCCCCCCC---cCCCCCCCCcEEEcccccCC
Q 004822 183 FHMNNNSISGQI-PPELSRLPSLVHMLLDNNNLTGYLP---PELSELPKLLILQLDNNNFE 239 (728)
Q Consensus 183 L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~ 239 (728)
|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 999998887643 2677788888888888888875544 36777777888888777765
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=4.4e-16 Score=151.30 Aligned_cols=129 Identities=26% Similarity=0.394 Sum_probs=108.2
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCc-cCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccC
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPE-ELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (728)
+.+++++|++. .+|..+.. +|++|++++|++++..+. .|..+++|++|+|++|.|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78899999986 67776643 889999999999876664 478888999999999999888888888888888888888
Q ss_pred cccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
|++++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|.+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 88888877778888888888888888888888888888888888888888876
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=6e-16 Score=148.19 Aligned_cols=135 Identities=20% Similarity=0.266 Sum_probs=80.6
Q ss_pred CCCCCCcceEEcCCCCCCCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCC
Q 004822 61 DPCTSNWTGVLCFNTTMDDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (728)
Q Consensus 61 ~~C~~~w~gv~C~~~~~~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 140 (728)
+.|.|.|.++.|.+. +++. +|..+ .++|++|++++|++.+..+..|..+++|++|++++|
T Consensus 3 ~~C~C~~~~l~~~~~-----------------~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 62 (177)
T 2o6r_A 3 SRCSCSGTEIRCNSK-----------------GLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN 62 (177)
T ss_dssp TTCEEETTEEECCSS-----------------CCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS
T ss_pred CCCEeCCCEEEecCC-----------------CCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC
Confidence 457777888888542 2321 23222 256777777777777655556667777777777777
Q ss_pred cCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCC
Q 004822 141 ELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (728)
Q Consensus 141 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (728)
.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus 63 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 63 QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 776555555666666666666666666555555555556666666555555444434445555555555555544
No 127
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.65 E-value=1.9e-16 Score=165.14 Aligned_cols=89 Identities=28% Similarity=0.458 Sum_probs=76.2
Q ss_pred cccCCceeccCceEEEEEEeC------CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 626 FNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
+...+.||+|+||+||+|.+. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+++..+||
T Consensus 28 ~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV 107 (308)
T 4gt4_A 28 VRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMI 107 (308)
T ss_dssp EEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEE
T ss_pred CeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEE
Confidence 445578999999999999973 46789999997543 23457899999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhcC
Q 004822 699 YEFMSNGTLRDQLSGI 714 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~ 714 (728)
||||++|+|.++|+.+
T Consensus 108 ~Ey~~~G~L~~~L~~~ 123 (308)
T 4gt4_A 108 FSYCSHGDLHEFLVMR 123 (308)
T ss_dssp EECCSSCBHHHHHHTT
T ss_pred EEcCCCCcHHHHHHhh
Confidence 9999999999999754
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=6.1e-16 Score=146.77 Aligned_cols=138 Identities=17% Similarity=0.199 Sum_probs=123.8
Q ss_pred CcceeEEECCCCCCc-cccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 004822 81 YLHLRELQLLNLNLS-GNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 159 (728)
..+++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..|..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 368999999999998 78888899999999999999999966 779999999999999999998888888889999999
Q ss_pred EeeccCCCCCC-cHhhhccCCCCEEEccCcccccccc---cccCCCCCCcEEECcCCCCCCCCCcC
Q 004822 160 QIDQNYISGSL-PKSFANLNKTRHFHMNNNSISGQIP---PELSRLPSLVHMLLDNNNLTGYLPPE 221 (728)
Q Consensus 160 ~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~~~~ 221 (728)
+|++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .+|++
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999999753 3789999999999999999997665 58899999999999999987 44443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=5.7e-16 Score=143.82 Aligned_cols=128 Identities=23% Similarity=0.227 Sum_probs=90.2
Q ss_pred CCCCCEEEccCCCCc-cCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEE
Q 004822 105 LSYLTILDFMWNKIS-GSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHF 183 (728)
Q Consensus 105 l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 183 (728)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777776 66677777777777777777777755 667777778888888888777677777777778888
Q ss_pred EccCcccccc-cccccCCCCCCcEEECcCCCCCCCCC---cCCCCCCCCcEEEcc
Q 004822 184 HMNNNSISGQ-IPPELSRLPSLVHMLLDNNNLTGYLP---PELSELPKLLILQLD 234 (728)
Q Consensus 184 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~ 234 (728)
++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8887777653 33566677777777777777765444 345566666666654
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=2.1e-15 Score=146.52 Aligned_cols=125 Identities=24% Similarity=0.315 Sum_probs=76.7
Q ss_pred EECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCC
Q 004822 87 LQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYI 166 (728)
Q Consensus 87 L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 166 (728)
+++++++++ .+|..+. ++|++|+|++|+++ .+|..|.++++|++|+|++|.+++..+..|..+++|++|+|++|.|
T Consensus 15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 444445554 3344332 46777777777776 5566677777777777777777766666666666666666666666
Q ss_pred CCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCC
Q 004822 167 SGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLT 215 (728)
Q Consensus 167 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (728)
++..|..|.++++|++|+|++|.++...+..|..+++|++|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666666666666666666666665444444555555555555555554
No 131
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.62 E-value=5.5e-16 Score=161.03 Aligned_cols=95 Identities=25% Similarity=0.377 Sum_probs=78.4
Q ss_pred hcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
..+++...+.||+|+||+||+|++.+ .||||+++... ....++|.+|+++|++++|||||+++|+|.+ +..+|||
T Consensus 34 ~~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVm 110 (307)
T 3omv_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVT 110 (307)
T ss_dssp CTTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEE
T ss_pred cHHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEE
Confidence 34567777899999999999999753 69999997543 3345689999999999999999999999854 5689999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 004822 700 EFMSNGTLRDQLSGIFSVIR 719 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~~~~ 719 (728)
|||++|+|.++|+......+
T Consensus 111 Ey~~gGsL~~~l~~~~~~l~ 130 (307)
T 3omv_A 111 QWCEGSSLYKHLHVQETKFQ 130 (307)
T ss_dssp ECCSSCBHHHHHHTSCCCCC
T ss_pred EcCCCCCHHHHHhhcCCCCC
Confidence 99999999999987544333
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.61 E-value=4.2e-15 Score=144.45 Aligned_cols=128 Identities=24% Similarity=0.340 Sum_probs=97.2
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCc
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (728)
+.+++++|+++ .+|..+. ++|++|+|++|.++ .+|..|..+++|++|+|++|.|++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888888887 5666553 57888888888887 66777888888888888888888777777888888888888888
Q ss_pred ccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 189 SISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 189 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
.+++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|.+..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 8777777777777777777777777776555567777777777777777653
No 133
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=99.60 E-value=1e-15 Score=161.34 Aligned_cols=92 Identities=21% Similarity=0.356 Sum_probs=75.1
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
++|...+.||+|+||+||+|+. .+|+.||||+++... ....+.|.+|+++|++++|||||++++++.+++..|||||
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE 103 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD 103 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence 4688889999999999999985 469999999997543 2334679999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCC
Q 004822 701 FMSNGTLRDQLSGIF 715 (728)
Q Consensus 701 y~~~GsL~~~L~~~~ 715 (728)
||++|+|.++|+.+.
T Consensus 104 y~~gg~L~~~i~~~~ 118 (350)
T 4b9d_A 104 YCEGGDLFKRINAQK 118 (350)
T ss_dssp CCTTCBHHHHHHHTT
T ss_pred CCCCCcHHHHHHHcC
Confidence 999999999997543
No 134
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=99.60 E-value=5.6e-16 Score=163.16 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=80.2
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
..|+..+.||+|+||.||+|... +|+.||||+++.......+.+.+|+++|++++|||||++++++.+++..|||||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 34667788999999999999964 59999999997554444557899999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcC
Q 004822 703 SNGTLRDQLSGI 714 (728)
Q Consensus 703 ~~GsL~~~L~~~ 714 (728)
++|+|.++++..
T Consensus 154 ~gg~L~~~l~~~ 165 (346)
T 4fih_A 154 EGGALTDIVTHT 165 (346)
T ss_dssp TTEEHHHHHHHS
T ss_pred CCCcHHHHHHcC
Confidence 999999999764
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.1e-15 Score=141.89 Aligned_cols=129 Identities=18% Similarity=0.210 Sum_probs=117.4
Q ss_pred CcceeEEECCCCCCc-cccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 004822 81 YLHLRELQLLNLNLS-GNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 159 (728)
..+++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 468999999999998 78899999999999999999999976 779999999999999999998888888889999999
Q ss_pred EeeccCCCCC-CcHhhhccCCCCEEEccCcccccccc---cccCCCCCCcEEECcC
Q 004822 160 QIDQNYISGS-LPKSFANLNKTRHFHMNNNSISGQIP---PELSRLPSLVHMLLDN 211 (728)
Q Consensus 160 ~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~ 211 (728)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999974 45889999999999999999997765 5788999999999864
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=1.2e-14 Score=139.09 Aligned_cols=130 Identities=22% Similarity=0.244 Sum_probs=104.2
Q ss_pred CCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccC
Q 004822 108 LTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (728)
Q Consensus 108 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (728)
.+.+++++|++. .+|..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888887 455544 36888999999988877777788888888888888888877777788888888888888
Q ss_pred cccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCC
Q 004822 188 NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 240 (728)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88887777677888888888888888886666666778888888888888875
No 137
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=99.58 E-value=1.2e-15 Score=164.62 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=81.2
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
..|+..+.||+|+||.||+|... +|+.||||++........+.+.+|+++|++++|||||++++++...+..|||||||
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~ 230 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 230 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence 45777889999999999999964 58999999997655445567999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcC
Q 004822 703 SNGTLRDQLSGI 714 (728)
Q Consensus 703 ~~GsL~~~L~~~ 714 (728)
++|+|.++++..
T Consensus 231 ~gG~L~~~i~~~ 242 (423)
T 4fie_A 231 EGGALTDIVTHT 242 (423)
T ss_dssp TTEEHHHHHHHS
T ss_pred CCCcHHHHHhcc
Confidence 999999999764
No 138
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.58 E-value=1.2e-15 Score=159.21 Aligned_cols=89 Identities=25% Similarity=0.333 Sum_probs=71.8
Q ss_pred CcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC----eEEEEEe
Q 004822 625 NFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG----EQMLVYE 700 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~lV~E 700 (728)
++...+.||+|+||+||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||+++|+|..++ ..+||||
T Consensus 4 ~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E 81 (303)
T 3hmm_A 4 TIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 81 (303)
T ss_dssp GEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred EEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence 456678999999999999998 589999999965422 1223445666667899999999999998654 5799999
Q ss_pred cCCCCCHHHHHhcCC
Q 004822 701 FMSNGTLRDQLSGIF 715 (728)
Q Consensus 701 y~~~GsL~~~L~~~~ 715 (728)
||++|+|.++|+...
T Consensus 82 y~~~gsL~~~l~~~~ 96 (303)
T 3hmm_A 82 YHEHGSLFDYLNRYT 96 (303)
T ss_dssp CCTTCBHHHHHHHCC
T ss_pred CCCCCcHHHHHHhCC
Confidence 999999999998753
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1.3e-15 Score=161.27 Aligned_cols=278 Identities=15% Similarity=0.160 Sum_probs=145.0
Q ss_pred CcceeEEECCCCCCccccCccccC-CCCCCEEEccCCCCc--cCCCccccCCCCCcEEeccCCcCCCcCCccCCC-----
Q 004822 81 YLHLRELQLLNLNLSGNLSPEIGR-LSYLTILDFMWNKIS--GSIPKEIGNIKSLELLLLNGNELTGSLPEELGY----- 152 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~~~~~~~~~~-l~~L~~L~Ls~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~----- 152 (728)
+.+++.|.++++ +...-...+.. +++|+.|||++|++. ...+. .++.++.+.+..|. ..+..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~---I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANF---VPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTE---ECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccc---cCHHHhccccccc
Confidence 356777777653 22111122333 778888888888887 22222 22234455555553 23345666
Q ss_pred ---CCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCC----CCCCCCcCCCCC
Q 004822 153 ---LPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNN----LTGYLPPELSEL 225 (728)
Q Consensus 153 ---l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~----l~~~~~~~l~~l 225 (728)
+++|+.|+|.+ .++.+.+.+|.++++|+.|++.+|.+....+..|..+.++..+.+..+. ........|..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78888888877 7777777778888888888888887776667777777777766665532 122223344444
Q ss_pred CCCc-EEEcccccCCCCCCcccc----cCCCCCcEEEccCCcCccCCCCC-CCCCCcCEEEccCCCCcccCCCCCcc--C
Q 004822 226 PKLL-ILQLDNNNFEGTTIPASY----SNMSKLLKLSLRNCSLQGPMPDL-SRIPNLGYLDLSSNQLNGSIPPGRLS--L 297 (728)
Q Consensus 226 ~~L~-~L~L~~N~l~~~~~p~~~----~~l~~L~~L~L~~n~l~~~~~~l-~~l~~L~~L~Ls~N~l~~~ip~~~~~--~ 297 (728)
..|+ .+.+.... .++..+ ....+++.+.+.++-.......+ ..+++|+.|+|++|+++ .||...|. .
T Consensus 176 ~~L~~~i~~~~~~----~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~ 250 (329)
T 3sb4_A 176 EPLETTIQVGAMG----KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKK 250 (329)
T ss_dssp CCCEEEEEECTTC----CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCT
T ss_pred cccceeEEecCCC----cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCC
Confidence 5555 33332211 111111 11233334433332111000000 12455555555555555 45544443 4
Q ss_pred CccEEEccCCCCCCcCchhccCCccCc-eeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCC-C-CCCCc
Q 004822 298 NITTIKLSNNKLTGTIPSNFSGLPRLQ-RLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPN 374 (728)
Q Consensus 298 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~-~-~~~~l 374 (728)
+|+.|+|.+| ++...+..|.++++|+ .+++.+ .++..-+..|. .+++|+.+++++|+++.++.. + ..+++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~-----~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFM-----GCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTT-----TCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhh-----CCccCCEEEeCCCccCccchhhhcCCcch
Confidence 5555555555 5444455566666666 666655 45433333444 555666666666666655532 2 34455
Q ss_pred eEEE
Q 004822 375 VTVR 378 (728)
Q Consensus 375 ~~l~ 378 (728)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 5543
No 140
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=99.57 E-value=3.5e-15 Score=153.76 Aligned_cols=90 Identities=28% Similarity=0.403 Sum_probs=75.1
Q ss_pred ccCCceeccCceEEEEEEeC-CCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEe----CCeEEEEE
Q 004822 627 NSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----EGEQMLVY 699 (728)
Q Consensus 627 ~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lV~ 699 (728)
...++||+|+||.||+|... ++..||||++... .....+.|.+|++++++++|||||++++++.. ++..+|||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 44567999999999999864 5889999999653 23334679999999999999999999999865 34579999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
|||++|+|.++|+....
T Consensus 109 Ey~~gg~L~~~l~~~~~ 125 (290)
T 3fpq_A 109 ELMTSGTLKTYLKRFKV 125 (290)
T ss_dssp ECCCSCBHHHHHHHHSS
T ss_pred eCCCCCCHHHHHHhcCC
Confidence 99999999999986543
No 141
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=99.56 E-value=2.1e-15 Score=156.43 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=82.6
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC---hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...++||+|+||+||+|+. .+|+.||||++.... ....+.+.+|+++|++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 4588889999999999999985 468999999996532 223467999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 004822 700 EFMSNGTLRDQLSGIFSVIR 719 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~~~~ 719 (728)
|||++|+|.++|.......+
T Consensus 112 Ey~~gG~L~~~i~~~~~l~e 131 (311)
T 4aw0_A 112 SYAKNGELLKYIRKIGSFDE 131 (311)
T ss_dssp CCCTTEEHHHHHHHHSSCCH
T ss_pred ecCCCCCHHHHHHHcCCCCH
Confidence 99999999999987654433
No 142
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=99.54 E-value=8.1e-15 Score=152.26 Aligned_cols=92 Identities=21% Similarity=0.373 Sum_probs=76.1
Q ss_pred CcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeCC---------
Q 004822 625 NFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--------- 693 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--------- 693 (728)
+|+..+.||+|+||+||+|.. .+|+.||||+++.... ...+.|.+|+++|++++|||||++++++...+
T Consensus 6 dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~~ 85 (299)
T 4g31_A 6 DFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPSS 85 (299)
T ss_dssp HEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC---------
T ss_pred hCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccccC
Confidence 477889999999999999985 4689999999975433 33467999999999999999999999986544
Q ss_pred ---eEEEEEecCCCCCHHHHHhcCCC
Q 004822 694 ---EQMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 694 ---~~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
..|+|||||++|+|.+++..+..
T Consensus 86 ~~~~l~ivmE~~~gg~L~~~l~~~~~ 111 (299)
T 4g31_A 86 PKVYLYIQMQLCRKENLKDWMNGRCT 111 (299)
T ss_dssp -CEEEEEEEECCCSCCHHHHHHTCCS
T ss_pred CCcEEEEEEecCCCCcHHHHHHhcCC
Confidence 36899999999999999987643
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=7.3e-15 Score=155.47 Aligned_cols=260 Identities=13% Similarity=0.118 Sum_probs=171.4
Q ss_pred CcceeEEECCCCCCc--cccCccccCCCCCCEEEccCCCCccCCCccccC--------CCCCcEEeccCCcCCCcCCccC
Q 004822 81 YLHLRELQLLNLNLS--GNLSPEIGRLSYLTILDFMWNKISGSIPKEIGN--------IKSLELLLLNGNELTGSLPEEL 150 (728)
Q Consensus 81 ~~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~~p~~~ 150 (728)
+.+|+.|||++|.+. ...... ++.++.+.+..|.+ .+..|.+ +++|+.|+|.+ .++.+.+.+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---cccccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 467999999999987 222222 22355566666633 3456677 99999999998 8887777889
Q ss_pred CCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCccc----ccccccccCCCCCCc-EEECcCCC-CCCCCCcCCCC
Q 004822 151 GYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSI----SGQIPPELSRLPSLV-HMLLDNNN-LTGYLPPELSE 224 (728)
Q Consensus 151 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l----~~~~p~~~~~l~~L~-~L~L~~N~-l~~~~~~~l~~ 224 (728)
.++++|+.|++.+|.+..+.+.+|.++.++..+.+..+.. .......|..+..|+ .+.+.... +.......-..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 9999999999999999888888898888787777666332 222233455556665 44443321 11000011123
Q ss_pred CCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc--CCcc-
Q 004822 225 LPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNIT- 300 (728)
Q Consensus 225 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~- 300 (728)
..+++.+.+.++-... ........+++|+.|+|++|+++.... .|.++++|+.|++.+| ++ .|+...|. .+|+
T Consensus 201 ~~~~~~l~~~~~l~~~-~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNA-DFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAG 277 (329)
T ss_dssp GGGCSEEEEEECCCHH-HHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCE
T ss_pred ccccceEEEeeeecHH-HHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccE
Confidence 4556666666542211 111112236788888888888876666 6788888888888887 55 56666555 5688
Q ss_pred EEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEE
Q 004822 301 TIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILD 356 (728)
Q Consensus 301 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~ 356 (728)
.+++.+ .++...+.+|.++++|+.|++++|+++..-+..|. ++++|+.+.
T Consensus 278 ~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~-----~~~~L~~ly 327 (329)
T 3sb4_A 278 TLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFG-----NGVPSKLIY 327 (329)
T ss_dssp EEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTC-----TTCCCCEEE
T ss_pred EEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhc-----CCcchhhhc
Confidence 888887 67766777888888888888888888844444555 667777765
No 144
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=99.51 E-value=1.2e-14 Score=152.51 Aligned_cols=91 Identities=19% Similarity=0.259 Sum_probs=78.1
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
.+.|...++||+|+||.||+|.. .+|+.||||+++.... +.+|+.++++++|||||++++++.+++..||||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 34577778899999999999995 4589999999975432 24799999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCCCcc
Q 004822 702 MSNGTLRDQLSGIFSVI 718 (728)
Q Consensus 702 ~~~GsL~~~L~~~~~~~ 718 (728)
|++|+|.++|+......
T Consensus 132 ~~gg~L~~~l~~~~~l~ 148 (336)
T 4g3f_A 132 LEGGSLGQLIKQMGCLP 148 (336)
T ss_dssp CTTCBHHHHHHHHSSCC
T ss_pred cCCCcHHHHHHHcCCCC
Confidence 99999999998754433
No 145
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.51 E-value=2.4e-14 Score=136.83 Aligned_cols=134 Identities=18% Similarity=0.217 Sum_probs=95.0
Q ss_pred ccccCCCCCCEEEccCCCCccCCCccccCCC-CCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccC
Q 004822 100 PEIGRLSYLTILDFMWNKISGSIPKEIGNIK-SLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLN 178 (728)
Q Consensus 100 ~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 178 (728)
+.+.++++|++|++++|++.. +|. +..+. +|++|++++|.+++. +.+..+++|++|+|++|.+++..+..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 346677788888888888874 454 44444 888888888888865 5678888888888888888866666667888
Q ss_pred CCCEEEccCccccccccc--ccCCCCCCcEEECcCCCCCCCCCcC----CCCCCCCcEEEcccccCC
Q 004822 179 KTRHFHMNNNSISGQIPP--ELSRLPSLVHMLLDNNNLTGYLPPE----LSELPKLLILQLDNNNFE 239 (728)
Q Consensus 179 ~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~~~~----l~~l~~L~~L~L~~N~l~ 239 (728)
+|++|++++|.+.. +|. .+..+++|++|++++|.++. +|.. +..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888888753 443 56677777777777777763 3432 566666666666666553
No 146
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=99.51 E-value=1.7e-14 Score=153.01 Aligned_cols=100 Identities=25% Similarity=0.462 Sum_probs=83.5
Q ss_pred chHHHHhhcCCcccCCceeccCceEEEEEEeCC------CCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCC-Cccccee
Q 004822 615 TYGEMALATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHH-RNLVSLV 686 (728)
Q Consensus 615 ~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H-~niv~l~ 686 (728)
..++++...++|...+.||+|+||.||+|.+.. ++.||||+++.... ...++|.+|+++|++++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 345666777889999999999999999998642 35799999976543 335679999999999966 8999999
Q ss_pred EEEEeC-CeEEEEEecCCCCCHHHHHhcC
Q 004822 687 GYCDEE-GEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 687 g~~~~~-~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
|+|.+. +..+||||||++|+|.++|+..
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~ 163 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSK 163 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHT
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhc
Confidence 999764 5689999999999999999864
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=6.2e-13 Score=144.07 Aligned_cols=260 Identities=11% Similarity=0.097 Sum_probs=163.6
Q ss_pred CCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEE
Q 004822 105 LSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFH 184 (728)
Q Consensus 105 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 184 (728)
+..++.+.+.. .++.+-..+|.++ +|+.+.+..+ ++.+-..+|.+. +|+.+.+.. .+..+.+.+|.++.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45666666654 3454555666664 6777777655 555555566663 577777764 56656666777777777777
Q ss_pred ccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCc
Q 004822 185 MNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQ 264 (728)
Q Consensus 185 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 264 (728)
+.+|.+.......|. ..+|+.+.+..+ ++.....+|.++++|+.+++..| ++. .-...|.+ .+|+.+.+. +.++
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-IGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-ECTTTTTT-CCCSEEEEE-TTCC
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-cccccccc-CCccEEEeC-CCcc
Confidence 777777655555555 467777777643 55555667777777777777664 332 22334555 567777773 4455
Q ss_pred cCCC-CCCCCCCcCEEEccCCCCc----ccCCCCCcc--CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccC
Q 004822 265 GPMP-DLSRIPNLGYLDLSSNQLN----GSIPPGRLS--LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSI 337 (728)
Q Consensus 265 ~~~~-~l~~l~~L~~L~Ls~N~l~----~~ip~~~~~--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i 337 (728)
.... .|.++++|+.+++.+|.+. ..++...+. .+|+.++|. +.++......|.++++|+.+.|..| ++..-
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 4444 6777777777777776653 134544444 577777777 3466566677888888888888554 55333
Q ss_pred CcchhhhccCCCCCCcEEECcCCcCCCcCCCC--CC-CCceEEEcCCCc
Q 004822 338 PSSIWQSRTLNATETFILDFQNNNLTNISGSF--NI-PPNVTVRLRGNP 383 (728)
Q Consensus 338 p~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~--~~-~~l~~l~l~~N~ 383 (728)
+..|. ++ +|+.+++++|.+..+.... ++ ..+..|++..|.
T Consensus 339 ~~aF~-----~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 FSAFN-----NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTSSS-----SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred HHhCC-----CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 34444 55 7888888888777765432 23 345677776654
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=6.2e-13 Score=144.05 Aligned_cols=264 Identities=10% Similarity=0.136 Sum_probs=204.5
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
..++.+.+.+ +++..-...|.+. +|+.+++..+ ++.+...+|.++ +|+.+.+.. .++..-+..|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3456666654 4555556677775 7999999876 776777788884 799999986 677677788999999999999
Q ss_pred eccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCC
Q 004822 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGT 241 (728)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 241 (728)
..|.++.+....|. ..+|+.+.|..+ +.......|.++++|+.+++..| ++.....+|.+ .+|+.+.+. +.++.
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~- 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN- 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE-
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE-
Confidence 99999977777777 589999999855 77677778999999999999875 66566677777 789999994 44543
Q ss_pred CCcccccCCCCCcEEEccCCcCc-----cCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccCCCCCCcC
Q 004822 242 TIPASYSNMSKLLKLSLRNCSLQ-----GPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSNNKLTGTI 313 (728)
Q Consensus 242 ~~p~~~~~l~~L~~L~L~~n~l~-----~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~N~l~~~~ 313 (728)
.-...|.++++|+.+++.+|.+. .... .|..+++|+.+++.+ .++ .++...|. .+|+.++|..| ++...
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 33567999999999999998875 2333 688999999999994 466 67766665 78999999665 77677
Q ss_pred chhccCCccCceeecccccCcccCCcchhhhccCCC-CCCcEEECcCCcCCCc
Q 004822 314 PSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNA-TETFILDFQNNNLTNI 365 (728)
Q Consensus 314 p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~-~~L~~L~l~~N~l~~~ 365 (728)
+.+|.++ +|+.+++.+|.+....+..|. .+ .++..|.+..+.+...
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~-----~~~~~l~~l~vp~~~~~~y 385 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWY-----GFPDDITVIRVPAESVEKY 385 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCC-----CSCTTCCEEEECGGGHHHH
T ss_pred HHhCCCC-CCCEEEEcCCCCccccccccc-----CCCCCccEEEeCHHHHHHh
Confidence 7889999 999999999988754444454 44 3678888888776543
No 149
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=1.7e-16 Score=155.11 Aligned_cols=150 Identities=23% Similarity=0.300 Sum_probs=99.8
Q ss_pred ceeEEECCCCCCccccCc------cccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCC
Q 004822 83 HLRELQLLNLNLSGNLSP------EIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKL 156 (728)
Q Consensus 83 ~l~~L~l~~~~l~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 156 (728)
+++.++++.+.+.+.+|+ .++.+++|++|+|++|++++ +| .+.++++|++|++++|.++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344445555555555554 77777788888888887775 55 6777778888888888777 566666666777
Q ss_pred CEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccc-cccCCCCCCcEEECcCCCCCCCCCcC----------CCCC
Q 004822 157 DRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIP-PELSRLPSLVHMLLDNNNLTGYLPPE----------LSEL 225 (728)
Q Consensus 157 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~----------l~~l 225 (728)
++|++++|++++ +| .+..+++|++|++++|.+....+ ..+..+++|++|++++|.+++.+|.. +..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 777777777775 33 57777777777777777764332 45667777777777777776554432 4555
Q ss_pred CCCcEEEcccccCC
Q 004822 226 PKLLILQLDNNNFE 239 (728)
Q Consensus 226 ~~L~~L~L~~N~l~ 239 (728)
++|+.|| +|.++
T Consensus 174 ~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 174 PNLKKLD--GMPVD 185 (198)
T ss_dssp SSCSEEC--CGGGT
T ss_pred CCcEEEC--CcccC
Confidence 6666554 44443
No 150
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=99.49 E-value=3e-14 Score=145.55 Aligned_cols=95 Identities=23% Similarity=0.355 Sum_probs=77.1
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|+..+.||+|+||+||+|.. .+|+.||||+++.... ...+.|.+|++++++++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 5788889999999999999985 4699999999975422 23457999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCCccc
Q 004822 700 EFMSNGTLRDQLSGIFSVIR 719 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~~~~ 719 (728)
||| +|+|.+++..+....+
T Consensus 93 Ey~-~g~L~~~l~~~~~l~e 111 (275)
T 3hyh_A 93 EYA-GNELFDYIVQRDKMSE 111 (275)
T ss_dssp ECC-CEEHHHHHHHSCSCCH
T ss_pred eCC-CCCHHHHHHHcCCCCH
Confidence 999 6899999987654433
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=1.9e-13 Score=129.71 Aligned_cols=105 Identities=20% Similarity=0.242 Sum_probs=74.9
Q ss_pred eEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeecc
Q 004822 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (728)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 164 (728)
+.|+++++.++. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 445555666653 454442 67788888888888777777777888888888888877666666777777777777777
Q ss_pred CCCCCCcHhhhccCCCCEEEccCccccc
Q 004822 165 YISGSLPKSFANLNKTRHFHMNNNSISG 192 (728)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 192 (728)
+|++..+..|.++++|++|+|++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7776666667777777777777776653
No 152
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=3.4e-14 Score=135.80 Aligned_cols=131 Identities=22% Similarity=0.226 Sum_probs=64.0
Q ss_pred ccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCc
Q 004822 126 IGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLV 205 (728)
Q Consensus 126 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 205 (728)
+.++.+|++|++++|.++. +|......++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4556666666666666663 333222223566666666665543 3455555555555555555543333334455555
Q ss_pred EEECcCCCCCCCCCc--CCCCCCCCcEEEcccccCCCCCCccc----ccCCCCCcEEEccCCc
Q 004822 206 HMLLDNNNLTGYLPP--ELSELPKLLILQLDNNNFEGTTIPAS----YSNMSKLLKLSLRNCS 262 (728)
Q Consensus 206 ~L~L~~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~p~~----~~~l~~L~~L~L~~n~ 262 (728)
+|++++|+++. +|. .+..+++|+.|++++|.++ .+|.. +..+++|+.|++++|.
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG--GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC--CcHhHHHHHHHHCCccceeCCCcCC
Confidence 55555555532 232 3444445555555555443 22332 4444444444444443
No 153
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.46 E-value=1.9e-16 Score=154.69 Aligned_cols=134 Identities=19% Similarity=0.283 Sum_probs=87.8
Q ss_pred ccCCCCCCEEEccCCCCccCCCc------cccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhh
Q 004822 102 IGRLSYLTILDFMWNKISGSIPK------EIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFA 175 (728)
Q Consensus 102 ~~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 175 (728)
+.....++.++++.+.+.+.+|. .|..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45556677777777777777665 67777777777777777775 45 6677777777777777776 4566666
Q ss_pred ccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCC-cCCCCCCCCcEEEcccccCCC
Q 004822 176 NLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLP-PELSELPKLLILQLDNNNFEG 240 (728)
Q Consensus 176 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~ 240 (728)
.+++|++|++++|++++ +| .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+++
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 66777777777777765 23 45566666666666666653221 245555666666666665543
No 154
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=99.46 E-value=8.6e-15 Score=151.68 Aligned_cols=96 Identities=24% Similarity=0.331 Sum_probs=75.5
Q ss_pred CCcccCCceeccCceEEEEEEeC----CCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
++|+..+.||+|+||+||+|+.. .++.||||+++.... .....|.+|+++|++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 46888899999999999999742 368999999965322 223468899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhcCCCccc
Q 004822 698 VYEFMSNGTLRDQLSGIFSVIR 719 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~~~~~ 719 (728)
|||||++|+|.++|.......+
T Consensus 104 vmEy~~gg~L~~~l~~~~~l~e 125 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLSKEVMFTE 125 (304)
T ss_dssp EECCCTTCEEHHHHHHHCCCCH
T ss_pred EEEcCCCCCHHHHHHhcCCCCH
Confidence 9999999999999987554333
No 155
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=99.44 E-value=1.6e-13 Score=155.57 Aligned_cols=96 Identities=25% Similarity=0.427 Sum_probs=84.7
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
++|...+.||+|+||.||+|.. .+|+.||||++........+.+.+|+.+|+.++|||||++++++.+.+..++|||||
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~~ 236 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFM 236 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeec
Confidence 4688889999999999999985 458999999998766555677999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCCCccc
Q 004822 703 SNGTLRDQLSGIFSVIR 719 (728)
Q Consensus 703 ~~GsL~~~L~~~~~~~~ 719 (728)
++|+|.++|..+.....
T Consensus 237 ~gg~L~~~i~~~~~~l~ 253 (573)
T 3uto_A 237 SGGELFEKVADEHNKMS 253 (573)
T ss_dssp CCCBHHHHHTCTTSCEE
T ss_pred CCCcHHHHHHHhCCCCC
Confidence 99999999976544444
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=6.7e-13 Score=125.98 Aligned_cols=105 Identities=25% Similarity=0.354 Sum_probs=65.5
Q ss_pred CCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccC
Q 004822 108 LTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (728)
Q Consensus 108 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (728)
.+.+++++|.++ .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456777777776 3555442 6667777777777766666666666666666666666665555556666666666666
Q ss_pred cccccccccccCCCCCCcEEECcCCCCC
Q 004822 188 NSISGQIPPELSRLPSLVHMLLDNNNLT 215 (728)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (728)
|++++..+..|..+++|++|+|++|.++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665544445555555555555555554
No 157
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=146.78 Aligned_cols=93 Identities=20% Similarity=0.374 Sum_probs=77.6
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeC------Ce
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------GE 694 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~~ 694 (728)
++|...+.||+|+||+||+|.. .+|+.||||+++... ....+.+.+|+++|++++|||||++++++... +.
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 4688889999999999999985 469999999997542 23345789999999999999999999997542 56
Q ss_pred EEEEEecCCCCCHHHHHhcCCCc
Q 004822 695 QMLVYEFMSNGTLRDQLSGIFSV 717 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~~~ 717 (728)
.|||||||+ |+|.+++......
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~~l 155 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQPL 155 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSSCC
T ss_pred EEEEEeCCC-CCHHHHHHhcCCC
Confidence 899999996 7899999876543
No 158
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.4e-12 Score=124.28 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=63.1
Q ss_pred eEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeecc
Q 004822 85 RELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQN 164 (728)
Q Consensus 85 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 164 (728)
+.++++++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 55666666664 3454443 56666666666666666666666666666666666666554445566666666666666
Q ss_pred CCCCCCcHhhhccCCCCEEEccCcccc
Q 004822 165 YISGSLPKSFANLNKTRHFHMNNNSIS 191 (728)
Q Consensus 165 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 191 (728)
+|++..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666554445555556666666555554
No 159
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=99.38 E-value=9.1e-13 Score=138.78 Aligned_cols=103 Identities=24% Similarity=0.288 Sum_probs=88.3
Q ss_pred cccchHHHHhhcCC----------cccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCC
Q 004822 612 RSFTYGEMALATNN----------FNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR 680 (728)
Q Consensus 612 ~~~~~~~~~~~~~~----------~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~ 680 (728)
..++++++..+++. |...+.||+|+||.||+|... +|+.||||++........+.|.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 34677777776654 555678999999999999975 6999999999766555667899999999999999
Q ss_pred cccceeEEEEeCCeEEEEEecCCCCCHHHHHhcC
Q 004822 681 NLVSLVGYCDEEGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 681 niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
|||++++++...+..++||||+++|+|.+++...
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 136 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQV 136 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTC
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHHhc
Confidence 9999999999999999999999999999998764
No 160
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=99.38 E-value=3.7e-13 Score=141.93 Aligned_cols=107 Identities=43% Similarity=0.762 Sum_probs=93.6
Q ss_pred CCccccchHHHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChh-cHHHHHHHHHHHhcCCCCcccceeE
Q 004822 609 DGVRSFTYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVG 687 (728)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g 687 (728)
.....+++.++...+++|...+.||+|+||.||+|..++|+.||||++...... ....|.+|++++++++|||||++++
T Consensus 15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 345678999999999999999999999999999999888999999999764322 2236899999999999999999999
Q ss_pred EEEeCCeEEEEEecCCCCCHHHHHhcCC
Q 004822 688 YCDEEGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 688 ~~~~~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
+|...+..++||||+++|+|.++++...
T Consensus 95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~ 122 (326)
T 3uim_A 95 FCMTPTERLLVYPYMANGSVASCLRERP 122 (326)
T ss_dssp EECCSSCCEEEEECCTTCBHHHHHHCCS
T ss_pred EEecCCceEEEEEeccCCCHHHHHHhcc
Confidence 9999999999999999999999998654
No 161
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=2.4e-12 Score=122.58 Aligned_cols=104 Identities=23% Similarity=0.346 Sum_probs=63.4
Q ss_pred CEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCc
Q 004822 109 TILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNN 188 (728)
Q Consensus 109 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 188 (728)
+.+++++|++. .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777775 5565543 66777777777776666666666666666666666666555555555566666666665
Q ss_pred ccccccccccCCCCCCcEEECcCCCCC
Q 004822 189 SISGQIPPELSRLPSLVHMLLDNNNLT 215 (728)
Q Consensus 189 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (728)
+|.+..+..|..+++|++|+|++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555444444555555555555555544
No 162
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=99.34 E-value=5.4e-13 Score=140.42 Aligned_cols=101 Identities=49% Similarity=0.783 Sum_probs=90.1
Q ss_pred cchHHHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC
Q 004822 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 693 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~ 693 (728)
+++.++...+++|...+.||+|+||.||+|..++|+.||||++........++|.+|++++++++|||||++++++...+
T Consensus 29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~ 108 (321)
T 2qkw_B 29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN 108 (321)
T ss_dssp -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence 44556667888999999999999999999998889999999997765555678999999999999999999999999999
Q ss_pred eEEEEEecCCCCCHHHHHhcC
Q 004822 694 EQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 694 ~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
..++||||+++|+|.+++...
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~ 129 (321)
T 2qkw_B 109 EMILIYKYMENGNLKRHLYGS 129 (321)
T ss_dssp CCEEEEECCTTCBTGGGSSSS
T ss_pred eEEEEEEcCCCCcHHHHHhcc
Confidence 999999999999999999764
No 163
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=99.33 E-value=2.7e-12 Score=134.26 Aligned_cols=92 Identities=21% Similarity=0.406 Sum_probs=82.8
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
++|...+.||+|+||.||+|... +++.||+|++........+.|.+|++++++++|||||++++++...+..++||||+
T Consensus 10 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 89 (310)
T 3s95_A 10 SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEYI 89 (310)
T ss_dssp GGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred hHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEec
Confidence 45777899999999999999964 58999999997766666778999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCC
Q 004822 703 SNGTLRDQLSGIF 715 (728)
Q Consensus 703 ~~GsL~~~L~~~~ 715 (728)
++|+|.++++...
T Consensus 90 ~~~~L~~~l~~~~ 102 (310)
T 3s95_A 90 KGGTLRGIIKSMD 102 (310)
T ss_dssp TTCBHHHHHHHCC
T ss_pred CCCcHHHHHHhcc
Confidence 9999999998743
No 164
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=99.32 E-value=3.4e-12 Score=132.80 Aligned_cols=92 Identities=22% Similarity=0.376 Sum_probs=82.1
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
...|...+.||+|+||.||+|.. .+|+.||||++........+.+.+|+.++++++|||||++++++...+..++||||
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 98 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY 98 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence 35688889999999999999984 56899999999765555567799999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcC
Q 004822 702 MSNGTLRDQLSGI 714 (728)
Q Consensus 702 ~~~GsL~~~L~~~ 714 (728)
+++|+|.+++...
T Consensus 99 ~~~~~L~~~~~~~ 111 (297)
T 3fxz_A 99 LAGGSLTDVVTET 111 (297)
T ss_dssp CTTCBHHHHHHHS
T ss_pred CCCCCHHHHHhhc
Confidence 9999999999864
No 165
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=99.31 E-value=3.4e-12 Score=134.71 Aligned_cols=95 Identities=24% Similarity=0.346 Sum_probs=82.4
Q ss_pred hcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
...+|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++|||||++++++...+..++|
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 345788889999999999999986 57999999999653 233346789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhcCCC
Q 004822 699 YEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~~ 716 (728)
||||++|+|.+++.....
T Consensus 93 ~e~~~~~~L~~~l~~~~~ 110 (328)
T 3fe3_A 93 MEYASGGEVFDYLVAHGR 110 (328)
T ss_dssp ECCCTTCBHHHHHHHHCC
T ss_pred EECCCCCcHHHHHHHcCC
Confidence 999999999999976543
No 166
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=99.30 E-value=3.1e-12 Score=144.59 Aligned_cols=96 Identities=23% Similarity=0.313 Sum_probs=77.4
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHH---HHHHHHHhcCCCCcccceeEEEEeCCeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEF---LTEIQFLSRLHHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f---~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 696 (728)
++|...++||+|+||.||+|... +|+.||||++..... .....+ ..++.+++.++|||||++++++.+.+..|
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly 268 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS 268 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence 45888899999999999999864 589999999964321 112223 34467778889999999999999999999
Q ss_pred EEEecCCCCCHHHHHhcCCCccc
Q 004822 697 LVYEFMSNGTLRDQLSGIFSVIR 719 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~~~~ 719 (728)
+|||||++|+|.++|.......+
T Consensus 269 lVmEy~~GGdL~~~l~~~~~l~E 291 (689)
T 3v5w_A 269 FILDLMNGGDLHYHLSQHGVFSE 291 (689)
T ss_dssp EEECCCCSCBHHHHHHHHCCCCH
T ss_pred EEEecCCCCcHHHHHHhcCCCCH
Confidence 99999999999999987644333
No 167
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=99.30 E-value=1.4e-12 Score=142.83 Aligned_cols=101 Identities=22% Similarity=0.268 Sum_probs=86.3
Q ss_pred cchHHHHhhcCCcccCCceeccCceEEEEEEeCC-CCEEEEEEcccCChh---cHHHHHHHHHHHhcCCCCcccceeEEE
Q 004822 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYC 689 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~---~~~~f~~E~~~l~~l~H~niv~l~g~~ 689 (728)
+.+.++...+++|...++||+|+||.||+|..+. ++.||||+++..... ..+.+.+|+.++..++|||||+++++|
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 143 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAF 143 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEE
Confidence 3456677778899999999999999999999764 789999999653211 122488999999999999999999999
Q ss_pred EeCCeEEEEEecCCCCCHHHHHhcC
Q 004822 690 DEEGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 690 ~~~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.+.+..++|||||++|+|.++++..
T Consensus 144 ~~~~~~~lV~Ey~~gg~L~~~l~~~ 168 (437)
T 4aw2_A 144 QDDNNLYLVMDYYVGGDLLTLLSKF 168 (437)
T ss_dssp ECSSEEEEEECCCTTCBHHHHHHTT
T ss_pred eeCCEEEEEEecCCCCcHHHHHHHc
Confidence 9999999999999999999999874
No 168
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=99.30 E-value=2.5e-12 Score=138.39 Aligned_cols=93 Identities=28% Similarity=0.477 Sum_probs=80.4
Q ss_pred CCcccCCceeccCceEEEEEEeC----CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
.+|...+.||+|+||.||+|... ++..||||+++... ....++|.+|+.++++++|||||+++|++...+..++|
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv 124 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV 124 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence 46888899999999999999864 46789999997643 33456899999999999999999999999988999999
Q ss_pred EecCCCCCHHHHHhcCCC
Q 004822 699 YEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~~ 716 (728)
||||++|+|.++++....
T Consensus 125 ~e~~~~~sL~~~l~~~~~ 142 (373)
T 2qol_A 125 TEYMENGSLDSFLRKHDA 142 (373)
T ss_dssp EECCTTCBHHHHHHTTTT
T ss_pred EeCCCCCcHHHHHHhCCC
Confidence 999999999999987543
No 169
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=99.30 E-value=9.4e-12 Score=129.90 Aligned_cols=102 Identities=38% Similarity=0.686 Sum_probs=90.5
Q ss_pred ccccchHHHHhhcCCcccC------CceeccCceEEEEEEeCCCCEEEEEEcccCC----hhcHHHHHHHHHHHhcCCCC
Q 004822 611 VRSFTYGEMALATNNFNSS------TQIGQGGYGKVYKGILPDGTVVAVKRAQEGS----LQGEKEFLTEIQFLSRLHHR 680 (728)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~------~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~----~~~~~~f~~E~~~l~~l~H~ 680 (728)
...|++.++..++.+|... +.||+|+||.||+|.. +++.||||++.... ....+.|.+|+.++++++||
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~ 90 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE 90 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence 4568999999999999988 8899999999999987 68899999986532 22346799999999999999
Q ss_pred cccceeEEEEeCCeEEEEEecCCCCCHHHHHhc
Q 004822 681 NLVSLVGYCDEEGEQMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 681 niv~l~g~~~~~~~~~lV~Ey~~~GsL~~~L~~ 713 (728)
||+++++++...+..++||||+++|+|.+++..
T Consensus 91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~ 123 (307)
T 2nru_A 91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSC 123 (307)
T ss_dssp TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHT
T ss_pred CeEEEEEEEecCCceEEEEEecCCCcHHHHHHh
Confidence 999999999988999999999999999999974
No 170
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=99.29 E-value=1.7e-12 Score=139.87 Aligned_cols=96 Identities=31% Similarity=0.514 Sum_probs=82.6
Q ss_pred HhhcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 620 ALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 620 ~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
....++|...+.||+|+||.||+|... +++.||||.++.... ...++|.+|++++++++|||||+++|+|...+..++
T Consensus 110 ~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l 189 (377)
T 3cbl_A 110 VLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYI 189 (377)
T ss_dssp BCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred EEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEE
Confidence 334567888899999999999999975 689999999975432 233579999999999999999999999998889999
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
|||||++|+|.++++...
T Consensus 190 v~e~~~~g~L~~~l~~~~ 207 (377)
T 3cbl_A 190 VMELVQGGDFLTFLRTEG 207 (377)
T ss_dssp EEECCTTCBHHHHHHHHG
T ss_pred EEEcCCCCCHHHHHHhcC
Confidence 999999999999998643
No 171
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=4.6e-12 Score=134.90 Aligned_cols=110 Identities=17% Similarity=0.270 Sum_probs=86.4
Q ss_pred CC-CCCcceEEcCCCCCCCCCcceeEEECCCC-CCccccCccccCCCCCCEEEccC-CCCccCCCccccCCCCCcEEecc
Q 004822 62 PC-TSNWTGVLCFNTTMDDGYLHLRELQLLNL-NLSGNLSPEIGRLSYLTILDFMW-NKISGSIPKEIGNIKSLELLLLN 138 (728)
Q Consensus 62 ~C-~~~w~gv~C~~~~~~~~~~~l~~L~l~~~-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~L~ 138 (728)
.| .|.|..+.|. ++ +++. +|. +..+++|++|+|++ |.+.+..|..|.++++|++|+|+
T Consensus 4 ~c~~C~~~~v~~~-----------------~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~ 64 (347)
T 2ifg_A 4 ACCPHGSSGLRCT-----------------RDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64 (347)
T ss_dssp SSCCSSSSCEECC-----------------SSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECC
T ss_pred cCccccCCEEEcC-----------------CCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECC
Confidence 45 5567777774 33 4553 666 88888899999985 88887777888888888888888
Q ss_pred CCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccc
Q 004822 139 GNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSIS 191 (728)
Q Consensus 139 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 191 (728)
+|+|++..|..|.++++|++|+|++|+|++..+..|..+. |+.|+|.+|.+.
T Consensus 65 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888888888888888888888888888877666666665 888888888775
No 172
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=99.29 E-value=6.9e-12 Score=133.75 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=78.4
Q ss_pred hhcCCcccCCceeccCceEEEEEEeC----CCCEEEEEEcccCChhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeE
Q 004822 621 LATNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQ 695 (728)
Q Consensus 621 ~~~~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~ 695 (728)
...+.|...+.||+|+||+||+|+.+ .++.||||++.... ....+.+|++++..+ +|||||++++++.+.+..
T Consensus 18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~--~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~ 95 (361)
T 4f9c_A 18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTS--HPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV 95 (361)
T ss_dssp GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTS--CHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcccc--CHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence 34567999999999999999999742 36789999986543 345688999999998 699999999999999999
Q ss_pred EEEEecCCCCCHHHHHhc
Q 004822 696 MLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~ 713 (728)
++|||||++|+|.+++..
T Consensus 96 ~lvmE~~~g~~L~~~~~~ 113 (361)
T 4f9c_A 96 VIAMPYLEHESFLDILNS 113 (361)
T ss_dssp EEEEECCCCCCHHHHHTT
T ss_pred EEEEeCCCcccHHHHHcC
Confidence 999999999999999954
No 173
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.28 E-value=5.9e-12 Score=128.78 Aligned_cols=93 Identities=33% Similarity=0.573 Sum_probs=82.3
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecCC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMS 703 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~~ 703 (728)
++|...+.||+|+||.||+|...+++.||||++..... ..++|.+|++++++++||||+++++++...+..++||||++
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 88 (269)
T 4hcu_A 10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME 88 (269)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence 45777889999999999999988888999999976533 34679999999999999999999999999899999999999
Q ss_pred CCCHHHHHhcCCCc
Q 004822 704 NGTLRDQLSGIFSV 717 (728)
Q Consensus 704 ~GsL~~~L~~~~~~ 717 (728)
+|+|.++++.....
T Consensus 89 ~~~L~~~l~~~~~~ 102 (269)
T 4hcu_A 89 HGCLSDYLRTQRGL 102 (269)
T ss_dssp TCBHHHHHHTTTTC
T ss_pred CCcHHHHHHhcCcc
Confidence 99999999865443
No 174
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=99.27 E-value=5.3e-12 Score=133.16 Aligned_cols=93 Identities=28% Similarity=0.451 Sum_probs=79.5
Q ss_pred CCcccCCceeccCceEEEEEEeC----CCCEEEEEEcccC-ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
..|...+.||+|+||.||+|... .+..||||+++.. .....++|.+|++++++++|||||++++++...+..++|
T Consensus 49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 128 (325)
T 3kul_A 49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV 128 (325)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence 45677789999999999999964 3456999999764 333456799999999999999999999999988899999
Q ss_pred EecCCCCCHHHHHhcCCC
Q 004822 699 YEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~~ 716 (728)
|||+++|+|.++++....
T Consensus 129 ~e~~~~~~L~~~l~~~~~ 146 (325)
T 3kul_A 129 TEYMENGSLDTFLRTHDG 146 (325)
T ss_dssp EECCTTCBHHHHHHTTTT
T ss_pred eeCCCCCcHHHHHHhccc
Confidence 999999999999976543
No 175
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=99.27 E-value=6.5e-12 Score=129.89 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=80.0
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
+.|...+.||+|+||.||+|... +|+.||||.+..... ...+.|.+|+..+.+++|||||++++++...+..++||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 45888899999999999999965 489999999976432 22367999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcC
Q 004822 700 EFMSNGTLRDQLSGI 714 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~ 714 (728)
||+++|+|.+++...
T Consensus 111 e~~~g~~L~~~l~~~ 125 (286)
T 3uqc_A 111 EWIRGGSLQEVADTS 125 (286)
T ss_dssp ECCCEEEHHHHHTTC
T ss_pred EecCCCCHHHHHhcC
Confidence 999999999999653
No 176
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=99.26 E-value=9.4e-12 Score=131.21 Aligned_cols=93 Identities=20% Similarity=0.335 Sum_probs=77.8
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC--------
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG-------- 693 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-------- 693 (728)
++|...+.||+|+||.||+|... +|+.||||++.... ....+.|.+|++++++++|||||++++++.+.+
T Consensus 6 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~ 85 (332)
T 3qd2_B 6 TDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEEM 85 (332)
T ss_dssp HHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHHH
T ss_pred hcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhhh
Confidence 35777899999999999999975 68999999997543 234567999999999999999999999986543
Q ss_pred -------------------------------------------------eEEEEEecCCCCCHHHHHhcCCC
Q 004822 694 -------------------------------------------------EQMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 694 -------------------------------------------------~~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
..++||||+++|+|.+++.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~ 157 (332)
T 3qd2_B 86 DEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCS 157 (332)
T ss_dssp HC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCS
T ss_pred hhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccC
Confidence 27999999999999999987543
No 177
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=99.25 E-value=1.4e-11 Score=131.79 Aligned_cols=93 Identities=23% Similarity=0.327 Sum_probs=81.0
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChh------cHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 696 (728)
+.|...+.||+|+||.||+|... +|+.||||.++..... ..+.+.+|+.++.+++|||||++++++...+..+
T Consensus 12 ~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~ 91 (361)
T 2yab_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDVV 91 (361)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred hceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEEE
Confidence 45778899999999999999864 5899999999754321 2467999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhcCCC
Q 004822 697 LVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+||||+++|+|.+++.....
T Consensus 92 lv~e~~~gg~L~~~l~~~~~ 111 (361)
T 2yab_A 92 LILELVSGGELFDFLAQKES 111 (361)
T ss_dssp EEEECCCSCBHHHHHTTCSC
T ss_pred EEEEcCCCCcHHHHHHhcCC
Confidence 99999999999999986543
No 178
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=99.24 E-value=2.8e-12 Score=143.37 Aligned_cols=95 Identities=33% Similarity=0.597 Sum_probs=83.2
Q ss_pred HHhhcCCcccCCceeccCceEEEEEEeCC-CCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 619 MALATNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 619 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
+.....+|...+.||+|+||.||+|.... +..||||.++.... ..++|.+|+.+|++++|||||+++|+|...+..++
T Consensus 215 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~l 293 (495)
T 1opk_A 215 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI 293 (495)
T ss_dssp CBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred cccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEE
Confidence 33445668888999999999999999765 78999999976533 35689999999999999999999999999899999
Q ss_pred EEecCCCCCHHHHHhcC
Q 004822 698 VYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~ 714 (728)
|||||++|+|.++++..
T Consensus 294 v~E~~~~g~L~~~l~~~ 310 (495)
T 1opk_A 294 ITEFMTYGNLLDYLREC 310 (495)
T ss_dssp EEECCTTCBHHHHHHHS
T ss_pred EEEccCCCCHHHHHHhc
Confidence 99999999999999853
No 179
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=99.24 E-value=5.4e-12 Score=137.25 Aligned_cols=102 Identities=24% Similarity=0.243 Sum_probs=86.7
Q ss_pred cchHHHHhhcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChh---cHHHHHHHHHHHhcCCCCcccceeEEE
Q 004822 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYC 689 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~---~~~~f~~E~~~l~~l~H~niv~l~g~~ 689 (728)
+.+.+.....++|...++||+|+||.||++..+ +|+.||||+++..... ..+.+.+|..++.+++|||||++++++
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~ 130 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF 130 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence 345666667788999999999999999999964 5899999999653221 123488999999999999999999999
Q ss_pred EeCCeEEEEEecCCCCCHHHHHhcCC
Q 004822 690 DEEGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 690 ~~~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.+.+..|+|||||++|+|.++++...
T Consensus 131 ~~~~~~~lVmE~~~gg~L~~~l~~~~ 156 (412)
T 2vd5_A 131 QDENYLYLVMEYYVGGDLLTLLSKFG 156 (412)
T ss_dssp ECSSEEEEEECCCCSCBHHHHHHHHS
T ss_pred eeCCEEEEEEcCCCCCcHHHHHHhcC
Confidence 99999999999999999999998643
No 180
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=99.24 E-value=5.9e-12 Score=135.45 Aligned_cols=89 Identities=25% Similarity=0.417 Sum_probs=74.3
Q ss_pred ccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecCCCC
Q 004822 627 NSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNG 705 (728)
Q Consensus 627 ~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~~~G 705 (728)
...+.||+|+||.||+|.. .+|+.||||+++.......++|.+|++++++++|||||++++++...+..++||||+++|
T Consensus 92 ~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~ 171 (373)
T 2x4f_A 92 SKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGG 171 (373)
T ss_dssp EEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTC
T ss_pred ecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCC
Confidence 3456899999999999985 458999999998766556678999999999999999999999999999999999999999
Q ss_pred CHHHHHhcCC
Q 004822 706 TLRDQLSGIF 715 (728)
Q Consensus 706 sL~~~L~~~~ 715 (728)
+|.+++....
T Consensus 172 ~L~~~l~~~~ 181 (373)
T 2x4f_A 172 ELFDRIIDES 181 (373)
T ss_dssp EEHHHHHHTG
T ss_pred cHHHHHHhcC
Confidence 9999997653
No 181
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=99.24 E-value=3.4e-12 Score=138.72 Aligned_cols=99 Identities=18% Similarity=0.265 Sum_probs=84.2
Q ss_pred hHHHHhhcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEe
Q 004822 616 YGEMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 691 (728)
Q Consensus 616 ~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~ 691 (728)
+.++....++|...++||+|+||.||+|... +++.||||+++.... ...+.+.+|+.+++.++|||||++++++.+
T Consensus 61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~ 140 (410)
T 3v8s_A 61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD 140 (410)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence 4556667788999999999999999999965 488999999864221 112358899999999999999999999999
Q ss_pred CCeEEEEEecCCCCCHHHHHhcC
Q 004822 692 EGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 692 ~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.+..++|||||++|+|.++++..
T Consensus 141 ~~~~~lV~E~~~gg~L~~~l~~~ 163 (410)
T 3v8s_A 141 DRYLYMVMEYMPGGDLVNLMSNY 163 (410)
T ss_dssp SSEEEEEECCCTTEEHHHHHHHC
T ss_pred CCEEEEEEeCCCCCcHHHHHHcC
Confidence 99999999999999999999764
No 182
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=99.24 E-value=6.9e-12 Score=130.17 Aligned_cols=93 Identities=31% Similarity=0.497 Sum_probs=80.2
Q ss_pred CCcccCCceeccCceEEEEEEe-----CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeC--CeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~ 696 (728)
++|+..+.||+|+||.||+|.+ .+++.||||++........+.|.+|++++++++|||||++++++... ...+
T Consensus 10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 89 (295)
T 3ugc_A 10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 89 (295)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence 4577788999999999999985 25789999999876666667899999999999999999999998653 4589
Q ss_pred EEEecCCCCCHHHHHhcCCC
Q 004822 697 LVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+||||+++|+|.+++.....
T Consensus 90 lv~e~~~~~~L~~~l~~~~~ 109 (295)
T 3ugc_A 90 LIMEYLPYGSLRDYLQKHKE 109 (295)
T ss_dssp EEEECCTTCBHHHHHHHCGG
T ss_pred EEEEeCCCCCHHHHHHhccc
Confidence 99999999999999987543
No 183
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=99.24 E-value=6.4e-12 Score=128.38 Aligned_cols=92 Identities=34% Similarity=0.487 Sum_probs=81.8
Q ss_pred cCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
.++|...+.||+|+||.||+|...++..||||++..... ..+++.+|++++.+++||||+++++++...+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence 456778899999999999999998888999999976533 3467999999999999999999999999888999999999
Q ss_pred CCCCHHHHHhcCC
Q 004822 703 SNGTLRDQLSGIF 715 (728)
Q Consensus 703 ~~GsL~~~L~~~~ 715 (728)
++|+|.+++....
T Consensus 86 ~~~~L~~~l~~~~ 98 (268)
T 3sxs_A 86 SNGCLLNYLRSHG 98 (268)
T ss_dssp TTCBHHHHHHHHG
T ss_pred CCCcHHHHHHHcC
Confidence 9999999998653
No 184
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=99.24 E-value=2e-11 Score=127.98 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=78.9
Q ss_pred Cccc-CCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEEec
Q 004822 625 NFNS-STQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 625 ~~~~-~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
.|.. .++||+|+||.||+|.. .+++.||||++........+.+.+|++++.++ +||||+++++++...+..++||||
T Consensus 13 ~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~ 92 (316)
T 2ac3_A 13 VYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFEK 92 (316)
T ss_dssp SCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred eEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEEc
Confidence 3444 47899999999999984 46899999999766555567899999999985 799999999999999999999999
Q ss_pred CCCCCHHHHHhcCC
Q 004822 702 MSNGTLRDQLSGIF 715 (728)
Q Consensus 702 ~~~GsL~~~L~~~~ 715 (728)
+++|+|.+++....
T Consensus 93 ~~~~~L~~~l~~~~ 106 (316)
T 2ac3_A 93 MRGGSILSHIHKRR 106 (316)
T ss_dssp CTTCBHHHHHHHHS
T ss_pred CCCCcHHHHHhccC
Confidence 99999999998654
No 185
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.24 E-value=1.2e-11 Score=131.60 Aligned_cols=94 Identities=24% Similarity=0.362 Sum_probs=81.0
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChh-cHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ-GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~-~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++...... ..+.+.+|++++++++|||||++++++...+..++|||
T Consensus 9 ~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~E 88 (347)
T 3zgw_A 9 LKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVLE 88 (347)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEEe
Confidence 46788889999999999999985 56899999999654322 23468999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCCC
Q 004822 701 FMSNGTLRDQLSGIFS 716 (728)
Q Consensus 701 y~~~GsL~~~L~~~~~ 716 (728)
|+++|+|.+++.....
T Consensus 89 ~~~gg~L~~~l~~~~~ 104 (347)
T 3zgw_A 89 YCPGGELFDYIISQDR 104 (347)
T ss_dssp CCTTCBHHHHHHHHSS
T ss_pred CCCCCCHHHHHHHcCC
Confidence 9999999999976543
No 186
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=99.23 E-value=1.6e-11 Score=132.58 Aligned_cols=92 Identities=24% Similarity=0.406 Sum_probs=82.4
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
+.|...+.||+|+||.||+|... +|+.||+|.+..........+.+|++++++++|||||++++++...+..++|||||
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~~ 130 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFL 130 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEcC
Confidence 46888899999999999999864 58899999998765555567999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCC
Q 004822 703 SNGTLRDQLSGIF 715 (728)
Q Consensus 703 ~~GsL~~~L~~~~ 715 (728)
++|+|.+++....
T Consensus 131 ~gg~L~~~l~~~~ 143 (387)
T 1kob_A 131 SGGELFDRIAAED 143 (387)
T ss_dssp CCCBHHHHTTCTT
T ss_pred CCCcHHHHHHhhc
Confidence 9999999998654
No 187
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=99.23 E-value=1.3e-11 Score=132.18 Aligned_cols=93 Identities=20% Similarity=0.354 Sum_probs=80.9
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.++++++|||||++++++...+..++|||
T Consensus 29 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~e 108 (362)
T 2bdw_A 29 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD 108 (362)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEe
Confidence 45788899999999999999864 58999999997543 2334578999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCCC
Q 004822 701 FMSNGTLRDQLSGIFS 716 (728)
Q Consensus 701 y~~~GsL~~~L~~~~~ 716 (728)
|+++|+|.+++..+..
T Consensus 109 ~~~gg~L~~~l~~~~~ 124 (362)
T 2bdw_A 109 LVTGGELFEDIVAREF 124 (362)
T ss_dssp CCCSCBHHHHHTTCSC
T ss_pred cCCCCCHHHHHHHcCC
Confidence 9999999999986543
No 188
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=99.23 E-value=8.8e-12 Score=128.47 Aligned_cols=92 Identities=30% Similarity=0.541 Sum_probs=79.1
Q ss_pred hcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
..++|...+.||+|+||.||+|...++..||||+++.... ..++|.+|++++.+++||||+++++++...+..++||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 4456778899999999999999998888999999976533 346799999999999999999999999988999999999
Q ss_pred CCCCCHHHHHhcC
Q 004822 702 MSNGTLRDQLSGI 714 (728)
Q Consensus 702 ~~~GsL~~~L~~~ 714 (728)
+++|+|.+++...
T Consensus 101 ~~~~~L~~~l~~~ 113 (283)
T 3gen_A 101 MANGCLLNYLREM 113 (283)
T ss_dssp CTTCBHHHHHHCG
T ss_pred cCCCcHHHHHHHh
Confidence 9999999999873
No 189
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=99.23 E-value=2.2e-11 Score=128.15 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=80.8
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
.++|...+.||+|+||.||+|... +++.||+|.+.... .....+.+|+.+++.++|||||++++++...+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 356788899999999999999864 58899999997543 3345789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCC
Q 004822 702 MSNGTLRDQLSGIF 715 (728)
Q Consensus 702 ~~~GsL~~~L~~~~ 715 (728)
+++|+|.+++....
T Consensus 83 ~~g~~L~~~l~~~~ 96 (321)
T 1tki_A 83 ISGLDIFERINTSA 96 (321)
T ss_dssp CCCCBHHHHHTSSS
T ss_pred CCCCCHHHHHHhcC
Confidence 99999999998754
No 190
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=99.23 E-value=8.1e-12 Score=127.61 Aligned_cols=91 Identities=22% Similarity=0.368 Sum_probs=79.0
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeC--CeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~lV~ 699 (728)
++|...+.||+|+||.||+|+.+ ++.||||++.... ....++|.+|+.++++++|||||++++++... +..++||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (271)
T 3kmu_A 10 KQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88 (271)
T ss_dssp GGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEE
T ss_pred HHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeee
Confidence 35777789999999999999984 8899999997543 33446799999999999999999999999876 6789999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.++++...
T Consensus 89 e~~~~~~L~~~l~~~~ 104 (271)
T 3kmu_A 89 HWMPYGSLYNVLHEGT 104 (271)
T ss_dssp ECCTTCBHHHHHHSCS
T ss_pred cccCCCcHHHHHhhcc
Confidence 9999999999998754
No 191
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=99.23 E-value=1.3e-11 Score=129.05 Aligned_cols=98 Identities=30% Similarity=0.451 Sum_probs=83.0
Q ss_pred HHHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe
Q 004822 617 GEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (728)
Q Consensus 617 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~ 694 (728)
.++.....+|...+.||+|+||.||+|.. +|+.||||++.... ....++|.+|++++++++|||||++++++...+.
T Consensus 30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 108 (309)
T 3p86_A 30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN 108 (309)
T ss_dssp --CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC
T ss_pred ccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc
Confidence 33444556788889999999999999987 68899999987543 2334579999999999999999999999999899
Q ss_pred EEEEEecCCCCCHHHHHhcCC
Q 004822 695 QMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.++||||+++|+|.++++...
T Consensus 109 ~~lv~e~~~~~~L~~~l~~~~ 129 (309)
T 3p86_A 109 LSIVTEYLSRGSLYRLLHKSG 129 (309)
T ss_dssp CEEEEECCTTCBHHHHHHSTT
T ss_pred eEEEEecCCCCcHHHHHhhcC
Confidence 999999999999999998653
No 192
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=99.22 E-value=1.1e-11 Score=137.07 Aligned_cols=96 Identities=27% Similarity=0.448 Sum_probs=83.6
Q ss_pred HHHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEE
Q 004822 617 GEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 617 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 696 (728)
+++....++|...+.||+|+||.||+|...++..||||+++... ...++|.+|+++|++++|||||+++|++. .+..+
T Consensus 181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~ 258 (454)
T 1qcf_A 181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIY 258 (454)
T ss_dssp TCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred cceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccE
Confidence 34455567788889999999999999999888899999997654 34678999999999999999999999986 66789
Q ss_pred EEEecCCCCCHHHHHhcC
Q 004822 697 LVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~ 714 (728)
+|||||++|+|.++++..
T Consensus 259 lv~e~~~~g~L~~~l~~~ 276 (454)
T 1qcf_A 259 IITEFMAKGSLLDFLKSD 276 (454)
T ss_dssp EEECCCTTCBHHHHHHSH
T ss_pred EEEeecCCCcHHHHHHhc
Confidence 999999999999999853
No 193
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=99.21 E-value=1.3e-11 Score=127.66 Aligned_cols=93 Identities=28% Similarity=0.460 Sum_probs=81.3
Q ss_pred CCcccCCceeccCceEEEEEEeCC-C-------CEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPD-G-------TVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 695 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~-g-------~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~ 695 (728)
++|...+.||+|+||.||+|.... + ..||+|.+........+.|.+|++++++++|||||++++++...+..
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 87 (289)
T 4fvq_A 8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN 87 (289)
T ss_dssp GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence 457778899999999999998543 3 47999999776556667899999999999999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhcCCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
++||||+++|+|.+++.....
T Consensus 88 ~lv~e~~~~~~L~~~l~~~~~ 108 (289)
T 4fvq_A 88 ILVQEFVKFGSLDTYLKKNKN 108 (289)
T ss_dssp EEEEECCTTCBHHHHHHHTGG
T ss_pred EEEEECCCCCCHHHHHHhCCC
Confidence 999999999999999987543
No 194
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=99.21 E-value=3e-11 Score=127.44 Aligned_cols=92 Identities=21% Similarity=0.347 Sum_probs=80.0
Q ss_pred CcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh------hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 625 NFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
.|...+.||+|+||.||+|... +|+.||||.+..... ...+++.+|+.++++++|||||++++++...+..++
T Consensus 12 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 91 (326)
T 2y0a_A 12 YYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDVIL 91 (326)
T ss_dssp HEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred ceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 4777889999999999999964 589999999865322 135679999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhcCCC
Q 004822 698 VYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~~ 716 (728)
||||+++|+|.+++.....
T Consensus 92 v~e~~~~~~L~~~l~~~~~ 110 (326)
T 2y0a_A 92 ILELVAGGELFDFLAEKES 110 (326)
T ss_dssp EEECCCSCBHHHHHTTSSC
T ss_pred EEEcCCCCCHHHHHHhcCC
Confidence 9999999999999986543
No 195
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=99.21 E-value=1.5e-11 Score=130.33 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=80.5
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|... +|+.||||+++... ....+.+.+|+.++++++|||||++++++...+..++||
T Consensus 5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~ 84 (337)
T 1o6l_A 5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM 84 (337)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence 46788899999999999999864 58999999996532 223457899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.+++.....
T Consensus 85 E~~~gg~L~~~l~~~~~ 101 (337)
T 1o6l_A 85 EYANGGELFFHLSRERV 101 (337)
T ss_dssp ECCTTCBHHHHHHHHSC
T ss_pred eCCCCCcHHHHHHhcCC
Confidence 99999999999986543
No 196
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=99.21 E-value=2.6e-11 Score=125.56 Aligned_cols=90 Identities=26% Similarity=0.398 Sum_probs=78.0
Q ss_pred CcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecCC
Q 004822 625 NFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMS 703 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~~ 703 (728)
++....+||+|+||.||+|.. .+++.||||.+........+.+.+|+.+++.++|||||++++++...+..++||||++
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~ 102 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP 102 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence 355567899999999999995 4588999999977655556789999999999999999999999999999999999999
Q ss_pred CCCHHHHHhcC
Q 004822 704 NGTLRDQLSGI 714 (728)
Q Consensus 704 ~GsL~~~L~~~ 714 (728)
+|+|.+++...
T Consensus 103 ~~~L~~~l~~~ 113 (295)
T 2clq_A 103 GGSLSALLRSK 113 (295)
T ss_dssp EEEHHHHHHHT
T ss_pred CCCHHHHHHhh
Confidence 99999999865
No 197
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=99.21 E-value=2.4e-11 Score=126.07 Aligned_cols=92 Identities=25% Similarity=0.311 Sum_probs=79.9
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC---hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
+.|...+.||+|+||.||+|.. .+++.||||.+.... ....+.|.+|+.++.+++|||||++++++...+..++||
T Consensus 11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 90 (294)
T 4eqm_A 11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM 90 (294)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence 4677889999999999999985 458899999985432 233467999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.+++....
T Consensus 91 e~~~g~~L~~~l~~~~ 106 (294)
T 4eqm_A 91 EYIEGPTLSEYIESHG 106 (294)
T ss_dssp ECCCSCBHHHHHHHHC
T ss_pred eCCCCCCHHHHHHhcC
Confidence 9999999999998654
No 198
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=99.21 E-value=1.3e-11 Score=125.93 Aligned_cols=92 Identities=34% Similarity=0.548 Sum_probs=81.8
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecCC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMS 703 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~~ 703 (728)
++|...+.||+|+||.||+|...+++.||||.+..... ..+++.+|++++++++||||+++++++...+..++||||++
T Consensus 8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~ 86 (267)
T 3t9t_A 8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME 86 (267)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence 45777889999999999999988888999999976543 34689999999999999999999999998889999999999
Q ss_pred CCCHHHHHhcCCC
Q 004822 704 NGTLRDQLSGIFS 716 (728)
Q Consensus 704 ~GsL~~~L~~~~~ 716 (728)
+|+|.++++....
T Consensus 87 ~~~L~~~~~~~~~ 99 (267)
T 3t9t_A 87 HGCLSDYLRTQRG 99 (267)
T ss_dssp TCBHHHHHHHTTT
T ss_pred CCcHHHHHhhCcc
Confidence 9999999986543
No 199
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=99.21 E-value=1.8e-11 Score=131.03 Aligned_cols=92 Identities=21% Similarity=0.285 Sum_probs=80.7
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
.++|...+.||+|+||.||++... +++.||||++...... .+.+.+|+.++++++|||||++++++...+..++||||
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 97 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAAI-DENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY 97 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTTS-CHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCccc-cHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence 356888899999999999999965 6899999999764332 35688999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCC
Q 004822 702 MSNGTLRDQLSGIF 715 (728)
Q Consensus 702 ~~~GsL~~~L~~~~ 715 (728)
+++|+|.+++....
T Consensus 98 ~~~~~L~~~l~~~~ 111 (361)
T 3uc3_A 98 ASGGELYERICNAG 111 (361)
T ss_dssp CCSCBHHHHHHHHS
T ss_pred CCCCCHHHHHHhcC
Confidence 99999999997644
No 200
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=99.20 E-value=2e-11 Score=131.18 Aligned_cols=93 Identities=23% Similarity=0.523 Sum_probs=79.6
Q ss_pred cCCcccCCceeccCceEEEEEEeC--------CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcC-CCCcccceeEEEEeC
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEE 692 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~ 692 (728)
.++|...+.||+|+||.||+|+.. ++..||||+++.... ...++|.+|+++++++ +|||||+++++|...
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 356778899999999999999852 345799999976533 3346799999999999 899999999999999
Q ss_pred CeEEEEEecCCCCCHHHHHhcCC
Q 004822 693 GEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 693 ~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
+..++||||+++|+|.++++...
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~ 182 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARR 182 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTC
T ss_pred CCEEEEEEcCCCCCHHHHHHhhC
Confidence 99999999999999999998643
No 201
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=99.20 E-value=1.3e-11 Score=129.84 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=77.3
Q ss_pred hcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC----eEEE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG----EQML 697 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~----~~~l 697 (728)
..++|+..++||+|+||.||+|+.. ++.||||++..... ....+.+|+.++++++|||||++++++.... ..++
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l 99 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL 99 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred chhhchhhheecccCceEEEEEEEC-CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence 3456888899999999999999875 78999999965432 2345677999999999999999999998744 3699
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
||||+++|+|.++++...
T Consensus 100 v~e~~~~g~L~~~l~~~~ 117 (322)
T 3soc_A 100 ITAFHEKGSLSDFLKANV 117 (322)
T ss_dssp EEECCTTCBHHHHHHHCC
T ss_pred EEecCCCCCHHHHHHhcC
Confidence 999999999999998653
No 202
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=99.20 E-value=2.8e-11 Score=124.19 Aligned_cols=93 Identities=20% Similarity=0.340 Sum_probs=81.7
Q ss_pred CCcccCCceeccCceEEEEEEeCC-CCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
+.|...+.||+|+||.||+|.... +..||+|++........+.|.+|++++++++||||+++++++...+..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (277)
T 3f3z_A 9 QYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELC 88 (277)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEECC
T ss_pred hhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEecc
Confidence 357778899999999999999654 7799999997655555678999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCCC
Q 004822 703 SNGTLRDQLSGIFS 716 (728)
Q Consensus 703 ~~GsL~~~L~~~~~ 716 (728)
++|+|.+++.....
T Consensus 89 ~~~~L~~~~~~~~~ 102 (277)
T 3f3z_A 89 TGGELFERVVHKRV 102 (277)
T ss_dssp CSCBHHHHHHHHCS
T ss_pred CCCcHHHHHHHcCC
Confidence 99999999976543
No 203
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=99.20 E-value=3e-11 Score=130.73 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=80.3
Q ss_pred cCCcccCCceecc--CceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 623 TNNFNSSTQIGQG--GYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 623 ~~~~~~~~~iG~G--~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
..+|...+.||+| +||.||+|... +|+.||||++.... ....+.+.+|+.++++++|||||++++++...+..++
T Consensus 24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 103 (389)
T 3gni_B 24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV 103 (389)
T ss_dssp GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence 3457788999999 99999999965 68999999997542 2334578899999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhcC
Q 004822 698 VYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~ 714 (728)
|||||++|+|.+++...
T Consensus 104 v~e~~~~~~L~~~l~~~ 120 (389)
T 3gni_B 104 VTSFMAYGSAKDLICTH 120 (389)
T ss_dssp EEECCTTCBHHHHHHHT
T ss_pred EEEccCCCCHHHHHhhh
Confidence 99999999999999764
No 204
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=99.19 E-value=1.8e-11 Score=129.22 Aligned_cols=94 Identities=26% Similarity=0.380 Sum_probs=75.5
Q ss_pred cCCcccCCceeccCceEEEEEEe----CCCCEEEEEEcccCCh----hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL----PDGTVVAVKRAQEGSL----QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~ 694 (728)
.++|...+.||+|+||.||++.. .+|+.||||+++.... .....+.+|++++++++|||||++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 35678889999999999999986 4689999999976422 223468899999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhcCCC
Q 004822 695 QMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
.++||||+++|+|.+++.....
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~~ 117 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLEREGI 117 (327)
T ss_dssp EEEEEECCTTEEHHHHHHHHSS
T ss_pred EEEEEeCCCCCcHHHHHHhCCC
Confidence 9999999999999999986543
No 205
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=99.19 E-value=1.6e-11 Score=131.25 Aligned_cols=102 Identities=25% Similarity=0.496 Sum_probs=85.4
Q ss_pred cchHHHHhhcCCcccCCceeccCceEEEEEEe------CCCCEEEEEEcccCCh-hcHHHHHHHHHHHhcC-CCCcccce
Q 004822 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSL 685 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l-~H~niv~l 685 (728)
+...++....++|...+.||+|+||.||+|.. .+++.||||+++.... ...+.|.+|++++.++ +|||||++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 44556667778899999999999999999973 2357899999976433 3346799999999999 88999999
Q ss_pred eEEEEeCC-eEEEEEecCCCCCHHHHHhcCC
Q 004822 686 VGYCDEEG-EQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 686 ~g~~~~~~-~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
+|+|...+ ..++||||+++|+|.++++...
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~ 122 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR 122 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTT
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhcc
Confidence 99998754 4899999999999999998754
No 206
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=99.19 E-value=3.1e-11 Score=133.21 Aligned_cols=92 Identities=34% Similarity=0.498 Sum_probs=80.2
Q ss_pred hhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC-eEEEEE
Q 004822 621 LATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG-EQMLVY 699 (728)
Q Consensus 621 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~-~~~lV~ 699 (728)
...++|...+.||+|+||.||+|... |+.||||+++... ..++|.+|+++|++++|||||+++|+|...+ ..++||
T Consensus 190 i~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~ 266 (450)
T 1k9a_A 190 LNMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT 266 (450)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEE
T ss_pred cChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEE
Confidence 34566788899999999999999985 7899999997653 3468999999999999999999999997765 789999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
|||++|+|.++++...
T Consensus 267 e~~~~g~L~~~l~~~~ 282 (450)
T 1k9a_A 267 EYMAKGSLVDYLRSRG 282 (450)
T ss_dssp ECCTTCBHHHHHHHHC
T ss_pred EecCCCcHHHHHHhcC
Confidence 9999999999998643
No 207
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=99.19 E-value=2.1e-11 Score=130.44 Aligned_cols=92 Identities=24% Similarity=0.327 Sum_probs=80.9
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
++|...+.||+|+||.||+|... +|..||+|++.... ....+.+.+|+.++.+++|||||++++++...+..++||||
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 112 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH 112 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence 45778899999999999999965 58999999997643 33346799999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCC
Q 004822 702 MSNGTLRDQLSGIF 715 (728)
Q Consensus 702 ~~~GsL~~~L~~~~ 715 (728)
+++|+|.+++....
T Consensus 113 ~~~~~L~~~l~~~~ 126 (360)
T 3eqc_A 113 MDGGSLDQVLKKAG 126 (360)
T ss_dssp CTTCBHHHHHHHHS
T ss_pred CCCCCHHHHHHHcC
Confidence 99999999998653
No 208
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=4.1e-11 Score=127.46 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=59.0
Q ss_pred EEEccCC-CCccCCCccccCCCCCcEEeccC-CcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccC
Q 004822 110 ILDFMWN-KISGSIPKEIGNIKSLELLLLNG-NELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNN 187 (728)
Q Consensus 110 ~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 187 (728)
.++++++ +++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3466665 565 3555 66666666666664 666655555666666666666666666665555666666666666666
Q ss_pred cccccccccccCCCCCCcEEECcCCCCC
Q 004822 188 NSISGQIPPELSRLPSLVHMLLDNNNLT 215 (728)
Q Consensus 188 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 215 (728)
|+|++..+..|..++ |+.|+|.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 655544443343333 555555555444
No 209
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=99.18 E-value=1.8e-11 Score=135.30 Aligned_cols=93 Identities=32% Similarity=0.562 Sum_probs=81.2
Q ss_pred HHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 619 MALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 619 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
+....++|...+.||+|+||.||+|...++..||||+++.... ..++|.+|+++|++++|||||+++|++.. +..++|
T Consensus 179 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv 256 (452)
T 1fmk_A 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV 256 (452)
T ss_dssp SBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred cccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEE
Confidence 3445567888899999999999999998888899999986543 35689999999999999999999999865 678999
Q ss_pred EecCCCCCHHHHHhc
Q 004822 699 YEFMSNGTLRDQLSG 713 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~ 713 (728)
||||++|+|.++++.
T Consensus 257 ~e~~~~gsL~~~l~~ 271 (452)
T 1fmk_A 257 TEYMSKGSLLDFLKG 271 (452)
T ss_dssp ECCCTTCBHHHHHSH
T ss_pred ehhhcCCCHHHHHHh
Confidence 999999999999975
No 210
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=99.18 E-value=2.8e-11 Score=128.88 Aligned_cols=92 Identities=26% Similarity=0.332 Sum_probs=74.3
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
.+.|...+.||+|+||.||+|... +++.||||+++... ..+.+.+|++++++++|||||++++++...+..++||||
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~ 129 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLEL 129 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEEe
Confidence 356778899999999999999975 47899999997543 345688999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCCC
Q 004822 702 MSNGTLRDQLSGIFS 716 (728)
Q Consensus 702 ~~~GsL~~~L~~~~~ 716 (728)
+++|+|.+++.....
T Consensus 130 ~~~~~L~~~l~~~~~ 144 (349)
T 2w4o_A 130 VTGGELFDRIVEKGY 144 (349)
T ss_dssp CCSCBHHHHHTTCSS
T ss_pred CCCCCHHHHHHhcCC
Confidence 999999999987543
No 211
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=99.18 E-value=2.2e-11 Score=124.54 Aligned_cols=90 Identities=36% Similarity=0.543 Sum_probs=74.6
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCCh----hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL----QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~----~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.+|...+.||+|+||.||+|... |+.||||+++.... ...+.+.+|+++++.++||||+++++++...+..++||
T Consensus 7 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 85 (271)
T 3dtc_A 7 AELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85 (271)
T ss_dssp TSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEE
T ss_pred hheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEE
Confidence 56778899999999999999974 88999999865322 22467999999999999999999999999988999999
Q ss_pred ecCCCCCHHHHHhcC
Q 004822 700 EFMSNGTLRDQLSGI 714 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~ 714 (728)
||+++|+|.+++..+
T Consensus 86 e~~~~~~L~~~~~~~ 100 (271)
T 3dtc_A 86 EFARGGPLNRVLSGK 100 (271)
T ss_dssp ECCTTEEHHHHHTSS
T ss_pred EcCCCCCHHHHhhcC
Confidence 999999999999754
No 212
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=99.18 E-value=2.7e-11 Score=128.42 Aligned_cols=96 Identities=28% Similarity=0.540 Sum_probs=82.7
Q ss_pred HHhhcCCcccCCceeccCceEEEEEEeC------CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEe
Q 004822 619 MALATNNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 691 (728)
Q Consensus 619 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~ 691 (728)
+....++|...+.||+|+||.||+|... +++.||||+++.... ...+.|.+|+.++++++||||+++++++..
T Consensus 42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~ 121 (343)
T 1luf_A 42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV 121 (343)
T ss_dssp TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence 3445677888899999999999999964 347899999976433 334679999999999999999999999999
Q ss_pred CCeEEEEEecCCCCCHHHHHhcC
Q 004822 692 EGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 692 ~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.+..++||||+++|+|.++++..
T Consensus 122 ~~~~~lv~e~~~~~~L~~~l~~~ 144 (343)
T 1luf_A 122 GKPMCLLFEYMAYGDLNEFLRSM 144 (343)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHT
T ss_pred CCceEEEEecCCCCcHHHHHHHh
Confidence 89999999999999999999864
No 213
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=99.18 E-value=1.9e-11 Score=128.83 Aligned_cols=93 Identities=26% Similarity=0.357 Sum_probs=78.6
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
++|...+.||+|+||.||+|... +++.||||++..... ...+.+.+|+.+++.++|||||++++++...+..++||||
T Consensus 7 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 86 (323)
T 3tki_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (323)
T ss_dssp TCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred hhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEEc
Confidence 56888899999999999999865 689999999865432 2235689999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCCC
Q 004822 702 MSNGTLRDQLSGIFS 716 (728)
Q Consensus 702 ~~~GsL~~~L~~~~~ 716 (728)
+++|+|.+++.....
T Consensus 87 ~~~~~L~~~l~~~~~ 101 (323)
T 3tki_A 87 CSGGELFDRIEPDIG 101 (323)
T ss_dssp CTTEEGGGGSBTTTB
T ss_pred CCCCcHHHHHhhcCC
Confidence 999999999986543
No 214
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=99.18 E-value=2.5e-11 Score=127.49 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=80.3
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||++... +|+.||||+++.... ...+.+.+|+.+++.++|||||++++++.+.+..++||
T Consensus 6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~ 85 (318)
T 1fot_A 6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM 85 (318)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence 45778899999999999999864 589999999965321 23456889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.+++.....
T Consensus 86 e~~~gg~L~~~l~~~~~ 102 (318)
T 1fot_A 86 DYIEGGELFSLLRKSQR 102 (318)
T ss_dssp CCCCSCBHHHHHHHTSS
T ss_pred eCCCCCCHHHHHHHcCC
Confidence 99999999999986543
No 215
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=99.18 E-value=2.1e-11 Score=134.04 Aligned_cols=93 Identities=19% Similarity=0.348 Sum_probs=79.0
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
++|...+.||+|+||.||+|.. .+|+.||+|.+..... ...+.+.+|++++++++|||||++++++.+.+..++|||
T Consensus 11 ~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv~E 90 (444)
T 3soa_A 11 EEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFD 90 (444)
T ss_dssp HHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEEEC
T ss_pred CCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEEEE
Confidence 4577889999999999999985 4689999999975432 234579999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCCC
Q 004822 701 FMSNGTLRDQLSGIFS 716 (728)
Q Consensus 701 y~~~GsL~~~L~~~~~ 716 (728)
||++|+|.+++..+..
T Consensus 91 ~~~gg~L~~~i~~~~~ 106 (444)
T 3soa_A 91 LVTGGELFEDIVAREY 106 (444)
T ss_dssp CCBCCBHHHHHHHCSC
T ss_pred eCCCCCHHHHHHHcCC
Confidence 9999999999987644
No 216
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=99.18 E-value=5.5e-11 Score=125.33 Aligned_cols=85 Identities=22% Similarity=0.291 Sum_probs=75.3
Q ss_pred CCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-CCcccceeEEEEeCCeEEEEEecCCCCC
Q 004822 629 STQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQMLVYEFMSNGT 706 (728)
Q Consensus 629 ~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lV~Ey~~~Gs 706 (728)
.+.||+|+||.||+|... +|+.||||++... ....+.+|+.++..++ |||||++++++...+..++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 478999999999999964 5899999999643 3457889999999997 9999999999999999999999999999
Q ss_pred HHHHHhcCCC
Q 004822 707 LRDQLSGIFS 716 (728)
Q Consensus 707 L~~~L~~~~~ 716 (728)
|.+++.....
T Consensus 93 L~~~l~~~~~ 102 (325)
T 3kn6_A 93 LFERIKKKKH 102 (325)
T ss_dssp HHHHHHHCSC
T ss_pred HHHHHHhcCC
Confidence 9999987643
No 217
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=99.17 E-value=3.1e-11 Score=126.40 Aligned_cols=93 Identities=32% Similarity=0.494 Sum_probs=78.7
Q ss_pred cCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
.++|...+.||+|+||.||+|...+|+.||||++..... ...+.+.+|++++++++|||||++++++...+..++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 356888899999999999999988899999999965422 224578999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCCC
Q 004822 701 FMSNGTLRDQLSGIFS 716 (728)
Q Consensus 701 y~~~GsL~~~L~~~~~ 716 (728)
|++ |+|.+++.....
T Consensus 100 ~~~-~~l~~~~~~~~~ 114 (311)
T 3niz_A 100 FME-KDLKKVLDENKT 114 (311)
T ss_dssp CCS-EEHHHHHHTCTT
T ss_pred CCC-CCHHHHHHhccC
Confidence 999 589998876544
No 218
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.17 E-value=4.6e-11 Score=124.20 Aligned_cols=87 Identities=25% Similarity=0.478 Sum_probs=73.2
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhc--CCCCcccceeEEEEeCC----eEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDEEG----EQML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~----~~~l 697 (728)
++|...+.||+|+||.||+|+. +|+.||||++... ..+++.+|.+++.. ++||||+++++++...+ ..++
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 78 (303)
T 3gxj_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL 78 (303)
T ss_dssp GGCCCCEEEEECSSSEEEEC-C-TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEEE
T ss_pred ceeeehhhccCCCCeEEEEEEE-cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeEE
Confidence 4678889999999999999987 4889999999653 34568888888887 79999999999998766 7899
Q ss_pred EEecCCCCCHHHHHhcC
Q 004822 698 VYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~ 714 (728)
||||+++|+|.+++...
T Consensus 79 v~e~~~~g~L~~~l~~~ 95 (303)
T 3gxj_A 79 VSDYHEHGSLFDYLNRY 95 (303)
T ss_dssp EEECCTTCCHHHHHHHC
T ss_pred EEeccCCCCHHHHHhcc
Confidence 99999999999999764
No 219
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=99.17 E-value=4.3e-11 Score=134.13 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=78.2
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh-------------hcHHHHHHHHHHHhcCCCCcccceeEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-------------QGEKEFLTEIQFLSRLHHRNLVSLVGY 688 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-------------~~~~~f~~E~~~l~~l~H~niv~l~g~ 688 (728)
.+.|...+.||+|+||.||+|... +++.||||++..... ...+++.+|+.++++++|||||+++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 456888899999999999999964 578999999865321 124578999999999999999999999
Q ss_pred EEeCCeEEEEEecCCCCCHHHHHhcCCC
Q 004822 689 CDEEGEQMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 689 ~~~~~~~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+...+..++|||||++|+|.+++.....
T Consensus 115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~ 142 (504)
T 3q5i_A 115 FEDKKYFYLVTEFYEGGELFEQIINRHK 142 (504)
T ss_dssp EECSSEEEEEEECCTTCBHHHHHHHHSC
T ss_pred EEcCCEEEEEEecCCCCcHHHHHHHcCC
Confidence 9999999999999999999999976543
No 220
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=99.17 E-value=4.5e-11 Score=127.43 Aligned_cols=90 Identities=22% Similarity=0.331 Sum_probs=78.0
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC-----hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-----LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
+.|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.+++.++|||||++++++...+..++
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~l 103 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLYM 103 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence 34777899999999999999854 58999999985421 1235679999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhc
Q 004822 698 VYEFMSNGTLRDQLSG 713 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~ 713 (728)
|||||++|+|.+++..
T Consensus 104 v~e~~~g~~L~~~l~~ 119 (351)
T 3c0i_A 104 VFEFMDGADLCFEIVK 119 (351)
T ss_dssp EEECCSSCBHHHHHHH
T ss_pred EEeCCCCCCHHHHHHH
Confidence 9999999999998864
No 221
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=99.17 E-value=4.4e-11 Score=127.16 Aligned_cols=93 Identities=23% Similarity=0.276 Sum_probs=79.5
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV 698 (728)
++|...+.||+|+||.||+|... +++.||||+++... ....+.+.+|..++.++ +|||||++++++...+..++|
T Consensus 9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv 88 (345)
T 3a8x_A 9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV 88 (345)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence 45778899999999999999965 48899999997542 22345688999999988 899999999999999999999
Q ss_pred EecCCCCCHHHHHhcCCC
Q 004822 699 YEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~~ 716 (728)
|||+++|+|.+++.....
T Consensus 89 ~e~~~gg~L~~~l~~~~~ 106 (345)
T 3a8x_A 89 IEYVNGGDLMFHMQRQRK 106 (345)
T ss_dssp ECCCCSCBHHHHHHHHSS
T ss_pred EeCCCCCcHHHHHHHcCC
Confidence 999999999999986543
No 222
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.17 E-value=1.3e-09 Score=118.08 Aligned_cols=282 Identities=14% Similarity=0.045 Sum_probs=146.7
Q ss_pred CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 004822 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRI 159 (728)
Q Consensus 80 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 159 (728)
+..+|+++.+.. +++..-..+|.++++|+.+++..+ +..+...+|.++.+|+.+.+..+ +.......|.+...++..
T Consensus 69 ~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~ 145 (394)
T 4fs7_A 69 GCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT 145 (394)
T ss_dssp TCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred CCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence 345788888864 466555667888888888888654 55455667777777777666543 222333333333222111
Q ss_pred EeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccC-
Q 004822 160 QIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNF- 238 (728)
Q Consensus 160 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l- 238 (728)
... .+..+...+|.++++|+.+.+.++. .......|.++++|+.+.+..+ ++......|.++..|+.+.+..+..
T Consensus 146 ~~~--~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~ 221 (394)
T 4fs7_A 146 IPE--GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY 221 (394)
T ss_dssp CCT--TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE
T ss_pred cCc--cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE
Confidence 111 1111223345555555555554332 2223334444555555555443 2222333344444444444333221
Q ss_pred --------------------CCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc--
Q 004822 239 --------------------EGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS-- 296 (728)
Q Consensus 239 --------------------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~-- 296 (728)
+. .....+.++.+|+.+.+..+...-....+..+..++.+....+. ++...+.
T Consensus 222 i~~~~~~~~~l~~i~ip~~~~~-i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~ 296 (394)
T 4fs7_A 222 LGDFALSKTGVKNIIIPDSFTE-LGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI----VPEKTFYGC 296 (394)
T ss_dssp ECTTTTTTCCCCEEEECTTCCE-ECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE----ECTTTTTTC
T ss_pred eehhhcccCCCceEEECCCcee-cccccccccccceeEEcCCCcceeeccccccccccceeccCcee----ecccccccc
Confidence 10 11234555666666666555433222245556666666555432 3333332
Q ss_pred CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCcCCC-C-CCCCc
Q 004822 297 LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNISGS-F-NIPPN 374 (728)
Q Consensus 297 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~-~-~~~~l 374 (728)
.+|+.+.+.++ ++.....+|.++.+|+.+++.++ ++..-..+|. ++.+|+.+++..| ++.+... + +..+|
T Consensus 297 ~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-----~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR-----GCTSLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT-----TCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred ccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc-----CCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence 57777777654 55455567777788888877644 5522233444 6677777777665 6665532 2 35666
Q ss_pred eEEEcCC
Q 004822 375 VTVRLRG 381 (728)
Q Consensus 375 ~~l~l~~ 381 (728)
+.+.+..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 6666643
No 223
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=99.17 E-value=3.8e-11 Score=127.97 Aligned_cols=94 Identities=24% Similarity=0.315 Sum_probs=80.1
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l 697 (728)
.++|...++||+|+||.||+|... +|+.||||+++... ....+.+.+|.+++..+ +|||||++++++...+..++
T Consensus 22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 101 (353)
T 3txo_A 22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF 101 (353)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence 467888999999999999999864 58999999997532 12345688999999988 79999999999999999999
Q ss_pred EEecCCCCCHHHHHhcCCC
Q 004822 698 VYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~~ 716 (728)
|||||++|+|.+++.....
T Consensus 102 v~E~~~gg~L~~~l~~~~~ 120 (353)
T 3txo_A 102 VMEFVNGGDLMFHIQKSRR 120 (353)
T ss_dssp EEECCCSCBHHHHHHHHSS
T ss_pred EEeCCCCCcHHHHHHHcCC
Confidence 9999999999999986543
No 224
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=99.16 E-value=4.5e-11 Score=126.01 Aligned_cols=91 Identities=31% Similarity=0.459 Sum_probs=79.6
Q ss_pred CCcccCCceeccCceEEEEEEe-----CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEe--CCeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGEQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~ 696 (728)
++|...+.||+|+||.||+|.+ .+++.||||++........+.|.+|++++++++|+||+++++++.. .+..+
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 102 (327)
T 3lxl_A 23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR 102 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence 4577788999999999999984 3578999999987766666789999999999999999999999874 45689
Q ss_pred EEEecCCCCCHHHHHhcC
Q 004822 697 LVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~ 714 (728)
+||||+++|+|.+++...
T Consensus 103 lv~e~~~~~~L~~~l~~~ 120 (327)
T 3lxl_A 103 LVMEYLPSGCLRDFLQRH 120 (327)
T ss_dssp EEEECCTTCBHHHHHHHH
T ss_pred EEEeecCCCCHHHHHHhc
Confidence 999999999999999864
No 225
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=99.16 E-value=2.2e-11 Score=137.48 Aligned_cols=94 Identities=32% Similarity=0.556 Sum_probs=81.7
Q ss_pred HHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 618 EMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 618 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
++....++|...+.||+|+||.||+|.+.++..||||+++.... ..++|.+|+++|++++|+|||+++|+|.. +..++
T Consensus 261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~l 338 (535)
T 2h8h_A 261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI 338 (535)
T ss_dssp CSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred ceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceE
Confidence 34445567888899999999999999998888899999976543 35689999999999999999999999865 67899
Q ss_pred EEecCCCCCHHHHHhc
Q 004822 698 VYEFMSNGTLRDQLSG 713 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~ 713 (728)
|||||++|+|.++|+.
T Consensus 339 v~e~~~~gsL~~~l~~ 354 (535)
T 2h8h_A 339 VTEYMSKGSLLDFLKG 354 (535)
T ss_dssp EECCCTTEEHHHHHSH
T ss_pred eeehhcCCcHHHHHhh
Confidence 9999999999999975
No 226
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.16 E-value=3.7e-11 Score=127.62 Aligned_cols=93 Identities=27% Similarity=0.415 Sum_probs=80.1
Q ss_pred HhhcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC-----ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC
Q 004822 620 ALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG-----SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 693 (728)
Q Consensus 620 ~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-----~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~ 693 (728)
....++|...+.||+|+||.||+|.. .++..||||++... .....+.|.+|++++++++|||||++++++...+
T Consensus 22 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~ 101 (345)
T 3hko_A 22 LELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDEQ 101 (345)
T ss_dssp HHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECSS
T ss_pred hhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccCC
Confidence 34456688899999999999999986 45889999998643 2233467999999999999999999999999999
Q ss_pred eEEEEEecCCCCCHHHHHh
Q 004822 694 EQMLVYEFMSNGTLRDQLS 712 (728)
Q Consensus 694 ~~~lV~Ey~~~GsL~~~L~ 712 (728)
..++||||+++|+|.+++.
T Consensus 102 ~~~lv~e~~~gg~L~~~l~ 120 (345)
T 3hko_A 102 YICLVMELCHGGHLLDKLN 120 (345)
T ss_dssp EEEEEEECCCSCBHHHHEE
T ss_pred eEEEEEeCCCCCcHHHHHH
Confidence 9999999999999999996
No 227
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=99.16 E-value=5.7e-11 Score=123.79 Aligned_cols=92 Identities=22% Similarity=0.341 Sum_probs=78.0
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
++|...+.||+|+||.||++... +|+.||||.++.......+.+.+|+.++++++||||+++++++...+..++||||+
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 88 (304)
T 2jam_A 9 KTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLV 88 (304)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred ccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEcC
Confidence 45777899999999999999964 68999999998654444567999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhcCC
Q 004822 703 SNGTLRDQLSGIF 715 (728)
Q Consensus 703 ~~GsL~~~L~~~~ 715 (728)
++|+|.+++....
T Consensus 89 ~~~~L~~~l~~~~ 101 (304)
T 2jam_A 89 SGGELFDRILERG 101 (304)
T ss_dssp CSCBHHHHHHHHS
T ss_pred CCccHHHHHHHcC
Confidence 9999999997644
No 228
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=99.16 E-value=3.3e-11 Score=125.34 Aligned_cols=92 Identities=24% Similarity=0.463 Sum_probs=78.7
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
.+.|...+.||+|+||.||+|... ++..||+|.+........++|.+|++++++++||||+++++++...+..++||||
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 97 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF 97 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence 356778899999999999999975 4889999999766555567899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcC
Q 004822 702 MSNGTLRDQLSGI 714 (728)
Q Consensus 702 ~~~GsL~~~L~~~ 714 (728)
+++|+|.+++...
T Consensus 98 ~~~~~l~~~~~~~ 110 (302)
T 2j7t_A 98 CPGGAVDAIMLEL 110 (302)
T ss_dssp CTTEEHHHHHHHH
T ss_pred CCCCcHHHHHHhh
Confidence 9999999998753
No 229
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=99.16 E-value=3.3e-11 Score=126.08 Aligned_cols=94 Identities=29% Similarity=0.506 Sum_probs=80.9
Q ss_pred hcCCcccCCceeccCceEEEEEEe------CCCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~ 694 (728)
..++|...+.||+|+||.||+|.. .++..||||+++... ....+++.+|++++++++|||||++++++...+.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 456678889999999999999985 235789999997643 3334679999999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhcCC
Q 004822 695 QMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.++||||+++|+|.+++....
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~ 121 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESR 121 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTT
T ss_pred eEEEEeecCCCCHHHHHHHHh
Confidence 999999999999999998643
No 230
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=99.16 E-value=6.2e-11 Score=123.86 Aligned_cols=93 Identities=29% Similarity=0.404 Sum_probs=80.2
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
++|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 46778899999999999999965 489999999865432 224578999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCCC
Q 004822 701 FMSNGTLRDQLSGIFS 716 (728)
Q Consensus 701 y~~~GsL~~~L~~~~~ 716 (728)
|+++|+|.+++.....
T Consensus 83 ~~~~~~l~~~~~~~~~ 98 (311)
T 4agu_A 83 YCDHTVLHELDRYQRG 98 (311)
T ss_dssp CCSEEHHHHHHHTSSC
T ss_pred eCCCchHHHHHhhhcC
Confidence 9999999999876543
No 231
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=99.16 E-value=5.7e-11 Score=124.77 Aligned_cols=92 Identities=26% Similarity=0.392 Sum_probs=78.7
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeCC--eEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lV~ 699 (728)
+.|...++||+|+||.||+|... +|+.||||++..... ...+.+.+|++++++++|||||++++++...+ ..++||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~ 88 (319)
T 4euu_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (319)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence 45777889999999999999965 489999999975432 33567899999999999999999999998755 779999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.+++....
T Consensus 89 e~~~~~~L~~~l~~~~ 104 (319)
T 4euu_A 89 EFCPCGSLYTVLEEPS 104 (319)
T ss_dssp ECCTTCBHHHHHHSGG
T ss_pred eCCCCCCHHHHHHHhc
Confidence 9999999999998643
No 232
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=1.1e-12 Score=140.60 Aligned_cols=136 Identities=17% Similarity=0.184 Sum_probs=67.3
Q ss_pred CCCcEEeccCCcCCCcCCccC-CCCCCCCEEEeeccCCCCCCcHhhh-----ccCCCCEEEccCcccccc----cccccC
Q 004822 130 KSLELLLLNGNELTGSLPEEL-GYLPKLDRIQIDQNYISGSLPKSFA-----NLNKTRHFHMNNNSISGQ----IPPELS 199 (728)
Q Consensus 130 ~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~L~~N~l~~~----~p~~~~ 199 (728)
++|++|+|++|.++......+ ..+++|++|+|++|.++......+. ..++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 344444444444432211111 1233455555555555433222221 234555555555555421 233334
Q ss_pred CCCCCcEEECcCCCCCCC----CCcCCCCCCCCcEEEcccccCCCC---CCcccccCCCCCcEEEccCCcCcc
Q 004822 200 RLPSLVHMLLDNNNLTGY----LPPELSELPKLLILQLDNNNFEGT---TIPASYSNMSKLLKLSLRNCSLQG 265 (728)
Q Consensus 200 ~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~ 265 (728)
.+++|++|+|++|++++. +...+...++|+.|+|++|.++.. .+...+...++|++|+|++|.+++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 555666666666665532 233444556677777777766531 122334456777777887777764
No 233
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=99.15 E-value=5.7e-11 Score=122.29 Aligned_cols=91 Identities=23% Similarity=0.374 Sum_probs=79.5
Q ss_pred CcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh------hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 625 NFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
+|...+.||+|+||.||+|... +|+.||||.++.... ...+.|.+|+.++++++||||+++++++...+..++
T Consensus 6 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 85 (283)
T 3bhy_A 6 HYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVL 85 (283)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred hhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEEE
Confidence 4777889999999999999975 589999999865322 135689999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
||||+++|+|.+++....
T Consensus 86 v~e~~~~~~L~~~l~~~~ 103 (283)
T 3bhy_A 86 ILELVSGGELFDFLAEKE 103 (283)
T ss_dssp EEECCCSCBHHHHHHHHS
T ss_pred EEeecCCCcHHHHHHhcC
Confidence 999999999999997643
No 234
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=99.15 E-value=3.7e-11 Score=127.59 Aligned_cols=95 Identities=19% Similarity=0.312 Sum_probs=80.1
Q ss_pred hhcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeE
Q 004822 621 LATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQ 695 (728)
Q Consensus 621 ~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~ 695 (728)
...++|...++||+|+||.||+|..+ +|+.||||+++... ....+.+.+|.+++..+ +|||||++++++...+..
T Consensus 14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~ 93 (345)
T 1xjd_A 14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL 93 (345)
T ss_dssp --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence 34567888999999999999999965 58899999997532 12345688899999877 999999999999999999
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+++|+|.+++....
T Consensus 94 ~lv~E~~~gg~L~~~l~~~~ 113 (345)
T 1xjd_A 94 FFVMEYLNGGDLMYHIQSCH 113 (345)
T ss_dssp EEEEECCTTCBHHHHHHHHS
T ss_pred EEEEeCCCCCcHHHHHHHcC
Confidence 99999999999999998643
No 235
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=99.15 E-value=2.6e-11 Score=126.69 Aligned_cols=87 Identities=32% Similarity=0.530 Sum_probs=75.3
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecCC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMS 703 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~~ 703 (728)
++|...+.||+|+||.||+|... ++.||||++.... ..+.|.+|++++++++|||||+++|++. +..++||||++
T Consensus 8 ~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~~~ 82 (307)
T 2eva_A 8 KEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESES--ERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEYAE 82 (307)
T ss_dssp GGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSSTT--HHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEECCT
T ss_pred hHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecChh--HHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEcCC
Confidence 35667789999999999999984 7889999997542 3467999999999999999999999885 45899999999
Q ss_pred CCCHHHHHhcCC
Q 004822 704 NGTLRDQLSGIF 715 (728)
Q Consensus 704 ~GsL~~~L~~~~ 715 (728)
+|+|.++++...
T Consensus 83 ~~~L~~~l~~~~ 94 (307)
T 2eva_A 83 GGSLYNVLHGAE 94 (307)
T ss_dssp TCBHHHHHHCSS
T ss_pred CCCHHHHHhccC
Confidence 999999998654
No 236
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=99.15 E-value=3e-11 Score=126.94 Aligned_cols=100 Identities=27% Similarity=0.516 Sum_probs=85.3
Q ss_pred cchHHHHhhcCCcccCCceeccCceEEEEEEeC------CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCccccee
Q 004822 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLV 686 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~ 686 (728)
+..+++....++|...+.||+|+||.||+|... .++.||||.+..... ....+|.+|++++++++||||++++
T Consensus 15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~ 94 (322)
T 1p4o_A 15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLL 94 (322)
T ss_dssp CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEE
T ss_pred cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeE
Confidence 444555666778999999999999999999854 367899999975433 3345799999999999999999999
Q ss_pred EEEEeCCeEEEEEecCCCCCHHHHHhc
Q 004822 687 GYCDEEGEQMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 687 g~~~~~~~~~lV~Ey~~~GsL~~~L~~ 713 (728)
+++...+..++||||+++|+|.++++.
T Consensus 95 ~~~~~~~~~~lv~e~~~~~~L~~~l~~ 121 (322)
T 1p4o_A 95 GVVSQGQPTLVIMELMTRGDLKSYLRS 121 (322)
T ss_dssp EEECSSSSCEEEEECCTTCBHHHHHHH
T ss_pred EEEccCCccEEEEEeCCCCcHHHHHHH
Confidence 999988899999999999999999975
No 237
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=99.15 E-value=3.6e-11 Score=129.46 Aligned_cols=93 Identities=24% Similarity=0.347 Sum_probs=80.3
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||++... +++.||||.+.... ....+.+.+|++++.+++|||||++++++...+..++||
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~ 94 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV 94 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 45778899999999999999864 48899999986432 223467899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.+++.....
T Consensus 95 e~~~gg~L~~~l~~~~~ 111 (384)
T 4fr4_A 95 DLLLGGDLRYHLQQNVH 111 (384)
T ss_dssp CCCTTEEHHHHHHTTCC
T ss_pred ecCCCCcHHHHHHhcCC
Confidence 99999999999987543
No 238
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=99.14 E-value=5.1e-11 Score=123.89 Aligned_cols=92 Identities=29% Similarity=0.442 Sum_probs=75.6
Q ss_pred CCcccCCceeccCceEEEEEEe-----CCCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeC--CeE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQ 695 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~ 695 (728)
..|...+.||+|+||.||+|.+ .+++.||||+++... ....+.+.+|++++.+++||||+++++++... ...
T Consensus 21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 100 (302)
T 4e5w_A 21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI 100 (302)
T ss_dssp GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence 3467778999999999999984 357899999997543 23346799999999999999999999999876 668
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+++|+|.+++....
T Consensus 101 ~lv~e~~~~~~L~~~l~~~~ 120 (302)
T 4e5w_A 101 KLIMEFLPSGSLKEYLPKNK 120 (302)
T ss_dssp EEEEECCTTCBHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHhcc
Confidence 99999999999999996543
No 239
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=7.9e-13 Score=141.81 Aligned_cols=134 Identities=18% Similarity=0.211 Sum_probs=81.8
Q ss_pred CCCCEEEeeccCCCCCCcHhh-hccCCCCEEEccCccccccccccc-----CCCCCCcEEECcCCCCCCC----CCcCCC
Q 004822 154 PKLDRIQIDQNYISGSLPKSF-ANLNKTRHFHMNNNSISGQIPPEL-----SRLPSLVHMLLDNNNLTGY----LPPELS 223 (728)
Q Consensus 154 ~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~----~~~~l~ 223 (728)
++|++|+|++|.++......+ ..+.+|++|+|++|.++......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 577777777777754333332 345677777777777754333333 2456777777777777532 233345
Q ss_pred CCCCCcEEEcccccCCCC---CCcccccCCCCCcEEEccCCcCccCCC-----CCCCCCCcCEEEccCCCCc
Q 004822 224 ELPKLLILQLDNNNFEGT---TIPASYSNMSKLLKLSLRNCSLQGPMP-----DLSRIPNLGYLDLSSNQLN 287 (728)
Q Consensus 224 ~l~~L~~L~L~~N~l~~~---~~p~~~~~l~~L~~L~L~~n~l~~~~~-----~l~~l~~L~~L~Ls~N~l~ 287 (728)
.+++|++|+|++|.++.. .++..+...++|++|+|++|.+++... .+...++|++|+|++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 567777777777777531 123445566677777777777764321 2334567777777777776
No 240
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=99.14 E-value=5e-11 Score=126.91 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=80.3
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||++... +|+.||||++..... ...+.+.+|++++.+++|||||++++++...+..++||
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 120 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM 120 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence 45777899999999999999964 589999999965321 23457899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.+++.....
T Consensus 121 e~~~gg~L~~~l~~~~~ 137 (350)
T 1rdq_E 121 EYVAGGEMFSHLRRIGR 137 (350)
T ss_dssp ECCTTCBHHHHHHHHCC
T ss_pred cCCCCCcHHHHHHHcCC
Confidence 99999999999986543
No 241
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=99.14 E-value=3.9e-11 Score=123.20 Aligned_cols=93 Identities=22% Similarity=0.409 Sum_probs=80.4
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|+. .+|+.||||.+..... ...+.+.+|++++++++||||+++++++...+..++||
T Consensus 11 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 90 (278)
T 3cok_A 11 EDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLVL 90 (278)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEEE
T ss_pred ccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEEE
Confidence 4577889999999999999985 4689999999964321 12357899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.+++.....
T Consensus 91 e~~~~~~L~~~l~~~~~ 107 (278)
T 3cok_A 91 EMCHNGEMNRYLKNRVK 107 (278)
T ss_dssp ECCTTEEHHHHHHTCSS
T ss_pred ecCCCCcHHHHHhhccC
Confidence 99999999999987543
No 242
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=99.14 E-value=8.4e-11 Score=123.58 Aligned_cols=92 Identities=22% Similarity=0.333 Sum_probs=80.0
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChh------cHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 696 (728)
+.|...+.||+|+||.||+|... +|+.||||.+...... ..++|.+|+.++.+++||||+++++++...+..+
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 91 (321)
T 2a2a_A 12 DFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDVV 91 (321)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred ccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEE
Confidence 34777899999999999999964 5899999998653221 3567999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 004822 697 LVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~ 715 (728)
+||||+++|+|.+++....
T Consensus 92 lv~e~~~~~~L~~~l~~~~ 110 (321)
T 2a2a_A 92 LILELVSGGELFDFLAQKE 110 (321)
T ss_dssp EEECCCCSCBHHHHHHTCS
T ss_pred EEEEcCCCCcHHHHHHhcC
Confidence 9999999999999998654
No 243
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=99.14 E-value=4.1e-11 Score=128.53 Aligned_cols=92 Identities=30% Similarity=0.501 Sum_probs=79.4
Q ss_pred cCCcccCCceeccCceEEEEEEeC------CCCEEEEEEcccC-ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP------DGTVVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 695 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~------~g~~vAvK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~ 695 (728)
.++|...+.||+|+||.||+|.+. ++..||||+++.. ......+|.+|+.++++++|||||++++++...+..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 346777899999999999999853 3568999999754 334456799999999999999999999999988899
Q ss_pred EEEEecCCCCCHHHHHhcC
Q 004822 696 MLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~ 714 (728)
++||||+++|+|.++++..
T Consensus 150 ~lv~e~~~~g~L~~~l~~~ 168 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRET 168 (367)
T ss_dssp EEEEECCTTEEHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHhh
Confidence 9999999999999999864
No 244
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.14 E-value=1.8e-11 Score=135.11 Aligned_cols=93 Identities=25% Similarity=0.241 Sum_probs=71.9
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC---ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++... .......+.+|++++++++|||||++++++...+..++|
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv 226 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV 226 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence 35688889999999999999985 45899999999653 222335688999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhcCC
Q 004822 699 YEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~ 715 (728)
||||++|+|.+++....
T Consensus 227 ~e~~~~~~L~~~l~~~~ 243 (446)
T 4ejn_A 227 MEYANGGELFFHLSRER 243 (446)
T ss_dssp ECCCSSCBHHHHHHHHS
T ss_pred EeeCCCCcHHHHHHhcC
Confidence 99999999999997654
No 245
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=99.14 E-value=5.5e-11 Score=132.94 Aligned_cols=92 Identities=23% Similarity=0.368 Sum_probs=75.8
Q ss_pred CcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 625 NFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
.|...+.||+|+||.||+|... ++..||||++.... ....+.+.+|+.+++.++|||||+++++|...+..++||||
T Consensus 38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~ 117 (494)
T 3lij_A 38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMEC 117 (494)
T ss_dssp HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEEec
Confidence 4777899999999999999964 58899999997543 22346799999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCCC
Q 004822 702 MSNGTLRDQLSGIFS 716 (728)
Q Consensus 702 ~~~GsL~~~L~~~~~ 716 (728)
+++|+|.+++.....
T Consensus 118 ~~~g~L~~~~~~~~~ 132 (494)
T 3lij_A 118 YKGGELFDEIIHRMK 132 (494)
T ss_dssp CCSCBHHHHHHHHSS
T ss_pred CCCCcHHHHHHHcCC
Confidence 999999999876543
No 246
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=99.14 E-value=8.3e-11 Score=131.16 Aligned_cols=94 Identities=24% Similarity=0.409 Sum_probs=81.3
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
+.|...++||+|+||.||+|... +|+.||||++.... ....+.+.+|+.++++++|||||++++++...+..++||
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 105 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLVG 105 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence 34777889999999999999964 68999999986432 234567999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCCc
Q 004822 700 EFMSNGTLRDQLSGIFSV 717 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~~ 717 (728)
||+++|+|.+++..+...
T Consensus 106 e~~~~~~L~~~~~~~~~~ 123 (484)
T 3nyv_A 106 EVYTGGELFDEIISRKRF 123 (484)
T ss_dssp CCCCSCBHHHHHHTCSCC
T ss_pred ecCCCCCHHHHHHhcCCC
Confidence 999999999999876543
No 247
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=99.14 E-value=6.3e-11 Score=124.82 Aligned_cols=93 Identities=32% Similarity=0.524 Sum_probs=79.2
Q ss_pred CCcccCCceeccCceEEEEEEe-----CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC--eEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-----PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-----~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~ 696 (728)
++|...+.||+|+||.||+|.+ .+|+.||||++........+.|.+|++++++++||||+++++++...+ ..+
T Consensus 41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 120 (326)
T 2w1i_A 41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK 120 (326)
T ss_dssp GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence 4577788999999999999984 358899999998766555678999999999999999999999986543 679
Q ss_pred EEEecCCCCCHHHHHhcCCC
Q 004822 697 LVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+||||+++|+|.+++.....
T Consensus 121 lv~e~~~~~~L~~~l~~~~~ 140 (326)
T 2w1i_A 121 LIMEYLPYGSLRDYLQKHKE 140 (326)
T ss_dssp EEECCCTTCBHHHHHHHSTT
T ss_pred EEEECCCCCCHHHHHHhccc
Confidence 99999999999999987543
No 248
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=99.13 E-value=1.1e-10 Score=120.27 Aligned_cols=91 Identities=26% Similarity=0.465 Sum_probs=79.9
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|... +++.||||++.... .....++.+|+..+.++ +|||||++++++...+..++||
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~lv~ 90 (289)
T 1x8b_A 11 TEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLIQN 90 (289)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEEEE
T ss_pred chhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence 45778899999999999999965 68999999987532 23456789999999999 9999999999999999999999
Q ss_pred ecCCCCCHHHHHhcC
Q 004822 700 EFMSNGTLRDQLSGI 714 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~ 714 (728)
||+++|+|.+++...
T Consensus 91 e~~~~~~L~~~l~~~ 105 (289)
T 1x8b_A 91 EYCNGGSLADAISEN 105 (289)
T ss_dssp ECCTTCBHHHHHHHH
T ss_pred EecCCCcHHHHHHhh
Confidence 999999999999753
No 249
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=99.13 E-value=4.2e-11 Score=129.43 Aligned_cols=94 Identities=21% Similarity=0.284 Sum_probs=79.0
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChh---cHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~---~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~l 697 (728)
.++|...++||+|+||.||+|+.+ +++.||||+++..... ..+.+.+|..++.++ +|||||++++++...+..++
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l 130 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 130 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence 356888899999999999999965 4789999999754222 223578899999887 89999999999999999999
Q ss_pred EEecCCCCCHHHHHhcCCC
Q 004822 698 VYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~~ 716 (728)
|||||++|+|.+++.....
T Consensus 131 V~E~~~gg~L~~~l~~~~~ 149 (396)
T 4dc2_A 131 VIEYVNGGDLMFHMQRQRK 149 (396)
T ss_dssp EEECCTTCBHHHHHHHHSS
T ss_pred EEEcCCCCcHHHHHHHcCC
Confidence 9999999999999986543
No 250
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=99.13 E-value=6.7e-11 Score=124.94 Aligned_cols=97 Identities=26% Similarity=0.467 Sum_probs=82.4
Q ss_pred HHHhhcCCcccCCceeccCceEEEEEEeCC------CCEEEEEEcccCCh-hcHHHHHHHHHHHhcC-CCCcccceeEEE
Q 004822 618 EMALATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYC 689 (728)
Q Consensus 618 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l-~H~niv~l~g~~ 689 (728)
++....++|...+.||+|+||.||+|.... +..||||.+..... ...+.+.+|+.++.++ +|||||++++++
T Consensus 40 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~ 119 (333)
T 2i1m_A 40 KWEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGAC 119 (333)
T ss_dssp GGBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEE
T ss_pred cccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence 344556788899999999999999998532 24799999976433 3346799999999999 899999999999
Q ss_pred EeCCeEEEEEecCCCCCHHHHHhcC
Q 004822 690 DEEGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 690 ~~~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
...+..++||||+++|+|.+++...
T Consensus 120 ~~~~~~~lv~e~~~~g~L~~~l~~~ 144 (333)
T 2i1m_A 120 THGGPVLVITEYCCYGDLLNFLRRK 144 (333)
T ss_dssp CSSSSCEEEEECCTTEEHHHHHHHH
T ss_pred ecCCceEEEEecCCCCcHHHHHHHh
Confidence 9999999999999999999999753
No 251
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=99.13 E-value=6.4e-11 Score=121.67 Aligned_cols=91 Identities=30% Similarity=0.525 Sum_probs=79.0
Q ss_pred hcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
..++|...+.||+|+||.||+|...++..||||.+..... ..+.|.+|++++++++||||+++++++. .+..++||||
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~ 88 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYIITEY 88 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEEEEC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcEEEEec
Confidence 3456778899999999999999988888999999976432 3568999999999999999999999986 4568999999
Q ss_pred CCCCCHHHHHhcC
Q 004822 702 MSNGTLRDQLSGI 714 (728)
Q Consensus 702 ~~~GsL~~~L~~~ 714 (728)
+++|+|.+++...
T Consensus 89 ~~~~~L~~~l~~~ 101 (279)
T 1qpc_A 89 MENGSLVDFLKTP 101 (279)
T ss_dssp CTTCBHHHHTTSH
T ss_pred CCCCCHHHHHhcC
Confidence 9999999999753
No 252
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=99.13 E-value=7.1e-11 Score=123.77 Aligned_cols=91 Identities=26% Similarity=0.400 Sum_probs=77.8
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEe----CCeEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----EGEQML 697 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~l 697 (728)
.++|...+.||+|+||.||++.. .+|+.||||++........+.+.+|++++++++|||||++++++.. ....++
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l 107 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL 107 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence 45688889999999999999995 5689999999976655566789999999999999999999999963 347899
Q ss_pred EEecCCCCCHHHHHhc
Q 004822 698 VYEFMSNGTLRDQLSG 713 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~ 713 (728)
||||+++|+|.+++..
T Consensus 108 v~e~~~~~~L~~~l~~ 123 (317)
T 2buj_A 108 LLPFFKRGTLWNEIER 123 (317)
T ss_dssp EEECCTTCBHHHHHHH
T ss_pred EEEeCCCCcHHHHHHH
Confidence 9999999999999975
No 253
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=99.13 E-value=7.6e-11 Score=135.09 Aligned_cols=85 Identities=29% Similarity=0.531 Sum_probs=73.3
Q ss_pred ceeccCceEEEEEEeC---CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecCCCCC
Q 004822 631 QIGQGGYGKVYKGILP---DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSNGT 706 (728)
Q Consensus 631 ~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~~~Gs 706 (728)
.||+|+||.||+|.+. ++..||||+++... ....++|.+|+++|++++|||||+++|+|.. +..++|||||++|+
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~E~~~~g~ 421 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVMEMAGGGP 421 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEEECCTTCB
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEEEeCCCCc
Confidence 7999999999999864 45679999997643 2345789999999999999999999999975 56999999999999
Q ss_pred HHHHHhcCCC
Q 004822 707 LRDQLSGIFS 716 (728)
Q Consensus 707 L~~~L~~~~~ 716 (728)
|.++++....
T Consensus 422 L~~~l~~~~~ 431 (613)
T 2ozo_A 422 LHKFLVGKRE 431 (613)
T ss_dssp HHHHHTTCTT
T ss_pred HHHHHhhccC
Confidence 9999986544
No 254
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=99.12 E-value=6.9e-11 Score=122.17 Aligned_cols=91 Identities=26% Similarity=0.401 Sum_probs=78.9
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChh--cHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~--~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
++|...+.||+|+||.||+|...+|+.||||++...... ..+.+.+|++++++++|||||++++++...+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 357778899999999999999877999999999654322 235789999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCC
Q 004822 702 MSNGTLRDQLSGIF 715 (728)
Q Consensus 702 ~~~GsL~~~L~~~~ 715 (728)
+++ +|.+++....
T Consensus 82 ~~~-~l~~~~~~~~ 94 (288)
T 1ob3_A 82 LDQ-DLKKLLDVCE 94 (288)
T ss_dssp CSE-EHHHHHHTST
T ss_pred cCC-CHHHHHHhcc
Confidence 985 9999998643
No 255
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=99.12 E-value=6.6e-11 Score=123.67 Aligned_cols=95 Identities=26% Similarity=0.461 Sum_probs=81.6
Q ss_pred hhcCCcccCCceeccCceEEEEEEe------CCCCEEEEEEcccCCh-hcHHHHHHHHHHHhcC-CCCcccceeEEEEeC
Q 004822 621 LATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEE 692 (728)
Q Consensus 621 ~~~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~ 692 (728)
...++|...+.||+|+||.||+|.. .+++.||||+++.... ...+.|.+|+.++.++ +||||+++++++...
T Consensus 20 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~ 99 (313)
T 1t46_A 20 FPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG 99 (313)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred cChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC
Confidence 3446788889999999999999984 2467899999976533 3346799999999999 999999999999999
Q ss_pred CeEEEEEecCCCCCHHHHHhcCC
Q 004822 693 GEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 693 ~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
+..++||||+++|+|.+++....
T Consensus 100 ~~~~lv~e~~~~~~L~~~l~~~~ 122 (313)
T 1t46_A 100 GPTLVITEYCCYGDLLNFLRRKR 122 (313)
T ss_dssp SSCEEEEECCTTEEHHHHHHHTT
T ss_pred CCcEEEEecCCCCCHHHHHHhcc
Confidence 99999999999999999998653
No 256
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=99.12 E-value=5.6e-11 Score=126.18 Aligned_cols=97 Identities=26% Similarity=0.478 Sum_probs=80.6
Q ss_pred HHhhcCCcccCCceeccCceEEEEEEe------CCCCEEEEEEcccCC-hhcHHHHHHHHHHHhcC-CCCcccceeEEEE
Q 004822 619 MALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCD 690 (728)
Q Consensus 619 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~ 690 (728)
+....++|...+.||+|+||.||+|.. .++..||||.+.... ....+.+.+|+.++.++ +||||+++++++.
T Consensus 40 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~ 119 (344)
T 1rjb_A 40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACT 119 (344)
T ss_dssp GBCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred cccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 344567788899999999999999985 235689999997542 22345799999999999 9999999999999
Q ss_pred eCCeEEEEEecCCCCCHHHHHhcCC
Q 004822 691 EEGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 691 ~~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
..+..++||||+++|+|.+++....
T Consensus 120 ~~~~~~lv~e~~~~g~L~~~l~~~~ 144 (344)
T 1rjb_A 120 LSGPIYLIFEYCCYGDLLNYLRSKR 144 (344)
T ss_dssp SSSSCEEEEECCTTCBHHHHHHTTT
T ss_pred eCCccEEEEecCCCCcHHHHHhhcc
Confidence 9999999999999999999998754
No 257
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=99.12 E-value=2.8e-11 Score=126.70 Aligned_cols=92 Identities=24% Similarity=0.227 Sum_probs=77.5
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe----E
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE----Q 695 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~----~ 695 (728)
+.|...+.||+|+||.||+|.. .+++.||||+++.... ...+.|.+|++++.+++|||||++++++...+. .
T Consensus 12 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 91 (311)
T 3ork_A 12 DRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPLP 91 (311)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred CcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCccc
Confidence 5678889999999999999995 5689999999976432 223578999999999999999999999876443 4
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+++|+|.++++...
T Consensus 92 ~lv~e~~~g~~L~~~l~~~~ 111 (311)
T 3ork_A 92 YIVMEYVDGVTLRDIVHTEG 111 (311)
T ss_dssp EEEEECCCEEEHHHHHHHHC
T ss_pred EEEEecCCCCCHHHHHHhcC
Confidence 99999999999999998654
No 258
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=99.12 E-value=7.3e-11 Score=135.66 Aligned_cols=86 Identities=28% Similarity=0.428 Sum_probs=72.8
Q ss_pred CceeccCceEEEEEEeC---CCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecCCC
Q 004822 630 TQIGQGGYGKVYKGILP---DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFMSN 704 (728)
Q Consensus 630 ~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~~~ 704 (728)
+.||+|+||.||+|.+. .++.||||+++.... ...++|.+|++++++++|||||+++|+|. .+..++|||||++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~-~~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICE-AESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEE-SSSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCCEEEEEEccCC
Confidence 47999999999999753 357899999975432 33578999999999999999999999996 4568899999999
Q ss_pred CCHHHHHhcCCC
Q 004822 705 GTLRDQLSGIFS 716 (728)
Q Consensus 705 GsL~~~L~~~~~ 716 (728)
|+|.++++....
T Consensus 454 g~L~~~l~~~~~ 465 (635)
T 4fl3_A 454 GPLNKYLQQNRH 465 (635)
T ss_dssp EEHHHHHHHCTT
T ss_pred CCHHHHHhhCCC
Confidence 999999986543
No 259
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=99.12 E-value=1.1e-10 Score=121.06 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=79.5
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccC---ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||++... +++.||+|.+... .....+.+.+|+.++++++||||+++++++...+..++||
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 94 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 94 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence 45777899999999999999965 4789999998653 2233467899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.+++....
T Consensus 95 e~~~~~~L~~~~~~~~ 110 (294)
T 2rku_A 95 ELCRRRSLLELHKRRK 110 (294)
T ss_dssp ECCTTCBHHHHHHHHC
T ss_pred ecCCCCCHHHHHHhcC
Confidence 9999999999987643
No 260
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=99.12 E-value=1e-10 Score=123.71 Aligned_cols=94 Identities=22% Similarity=0.522 Sum_probs=79.9
Q ss_pred hcCCcccCCceeccCceEEEEEEeC--------CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcC-CCCcccceeEEEEe
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDE 691 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~ 691 (728)
..++|...+.||+|+||.||+|... ++..||||+++... ....+++.+|+++++++ +||||+++++++..
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 3456888899999999999999853 46789999997643 23346799999999999 99999999999999
Q ss_pred CCeEEEEEecCCCCCHHHHHhcCC
Q 004822 692 EGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 692 ~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.+..++||||+++|+|.+++....
T Consensus 113 ~~~~~lv~e~~~~~~L~~~l~~~~ 136 (334)
T 2pvf_A 113 DGPLYVIVEYASKGNLREYLRARR 136 (334)
T ss_dssp SSCCEEEEECCTTCBHHHHHHTTS
T ss_pred CCceEEEEECCCCCcHHHHHHHhc
Confidence 999999999999999999998653
No 261
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=99.12 E-value=5.5e-11 Score=131.68 Aligned_cols=93 Identities=25% Similarity=0.332 Sum_probs=80.5
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+.+++.++|||||++++++...+..++||
T Consensus 16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~ 95 (476)
T 2y94_A 16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM 95 (476)
T ss_dssp TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence 46777899999999999999964 689999999965321 22457899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.+++.....
T Consensus 96 E~~~gg~L~~~l~~~~~ 112 (476)
T 2y94_A 96 EYVSGGELFDYICKNGR 112 (476)
T ss_dssp ECCSSEEHHHHTTSSSS
T ss_pred eCCCCCcHHHHHHhcCC
Confidence 99999999999986543
No 262
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=99.12 E-value=1.4e-10 Score=119.48 Aligned_cols=93 Identities=20% Similarity=0.369 Sum_probs=80.5
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 356888899999999999999864 58899999986532 233467899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.+++....
T Consensus 85 e~~~~~~l~~~~~~~~ 100 (284)
T 3kk8_A 85 DLVTGGELFEDIVARE 100 (284)
T ss_dssp CCCCSCBHHHHHHHHS
T ss_pred ecCCCCCHHHHHHhcC
Confidence 9999999999987654
No 263
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.12 E-value=7.9e-11 Score=124.52 Aligned_cols=92 Identities=29% Similarity=0.495 Sum_probs=78.1
Q ss_pred CCcccCCceeccCceEEEEEEeCC-----CCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPD-----GTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~-----g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
..|...+.||+|+||.||+|.... +..||||.++... .....+|.+|++++++++|||||++++++...+..++
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 123 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI 123 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEE
Confidence 456667899999999999998643 2369999997643 2334579999999999999999999999998899999
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
||||+++|+|.+++....
T Consensus 124 v~e~~~~~~L~~~l~~~~ 141 (333)
T 1mqb_A 124 ITEYMENGALDKFLREKD 141 (333)
T ss_dssp EEECCTTEEHHHHHHHTT
T ss_pred EEeCCCCCcHHHHHHhCC
Confidence 999999999999998653
No 264
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=99.12 E-value=1.3e-10 Score=119.98 Aligned_cols=90 Identities=28% Similarity=0.499 Sum_probs=75.3
Q ss_pred cccCC-ceeccCceEEEEEEeC---CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 626 FNSST-QIGQGGYGKVYKGILP---DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 626 ~~~~~-~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
|.... .||+|+||.||+|... ++..||||.++... ....+++.+|++++++++||||+++++++ ..+..++|||
T Consensus 11 ~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~lv~e 89 (287)
T 1u59_A 11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALMLVME 89 (287)
T ss_dssp EEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEEEEE
T ss_pred hhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEEEEE
Confidence 43444 8999999999999853 57789999997643 33456799999999999999999999999 5667999999
Q ss_pred cCCCCCHHHHHhcCCC
Q 004822 701 FMSNGTLRDQLSGIFS 716 (728)
Q Consensus 701 y~~~GsL~~~L~~~~~ 716 (728)
|+++|+|.+++.....
T Consensus 90 ~~~~~~L~~~l~~~~~ 105 (287)
T 1u59_A 90 MAGGGPLHKFLVGKRE 105 (287)
T ss_dssp CCTTEEHHHHHTTCTT
T ss_pred eCCCCCHHHHHHhCCc
Confidence 9999999999976543
No 265
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=99.12 E-value=1.1e-10 Score=119.74 Aligned_cols=93 Identities=25% Similarity=0.325 Sum_probs=80.5
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
.++|...+.||+|+||.||+|... +|+.||||.+..... ...+.+.+|+.++++++||||+++++++...+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 356778899999999999999965 689999999865321 2345789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhcCC
Q 004822 699 YEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~ 715 (728)
|||+++|+|.+++....
T Consensus 90 ~e~~~~~~L~~~l~~~~ 106 (276)
T 2h6d_A 90 MEYVSGGELFDYICKHG 106 (276)
T ss_dssp EECCCSCBHHHHHHHHC
T ss_pred EeccCCCcHHHHHhccC
Confidence 99999999999997643
No 266
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=99.11 E-value=4.6e-11 Score=123.32 Aligned_cols=95 Identities=33% Similarity=0.597 Sum_probs=82.7
Q ss_pred HHhhcCCcccCCceeccCceEEEEEEeCC-CCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 619 MALATNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 619 ~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
+.....+|...+.||+|+||.||+|.... +..||||.+..... ..++|.+|++++++++||||+++++++...+..++
T Consensus 8 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 86 (288)
T 3kfa_A 8 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI 86 (288)
T ss_dssp TBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCST-HHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEE
T ss_pred ccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCHH-HHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEE
Confidence 33455678888999999999999999754 78999999976433 35679999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHhcC
Q 004822 698 VYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~ 714 (728)
||||+++|+|.+++...
T Consensus 87 v~e~~~~~~L~~~~~~~ 103 (288)
T 3kfa_A 87 ITEFMTYGNLLDYLREC 103 (288)
T ss_dssp EEECCTTEEHHHHHHHC
T ss_pred EEEcCCCCcHHHHHHhc
Confidence 99999999999999863
No 267
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=99.11 E-value=8.6e-11 Score=125.91 Aligned_cols=91 Identities=20% Similarity=0.293 Sum_probs=77.5
Q ss_pred HhhcCCcccCCceeccCceEEEEEE------eCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC---CCcccceeEEEE
Q 004822 620 ALATNNFNSSTQIGQGGYGKVYKGI------LPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGYCD 690 (728)
Q Consensus 620 ~~~~~~~~~~~~iG~G~fg~Vy~~~------~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~ 690 (728)
....+.|...+.||+|+||.||+|. ..+++.||||++.... ..+|.+|++++..++ |+||+++++++.
T Consensus 61 ~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~ 137 (365)
T 3e7e_A 61 QLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPAN---PWEFYIGTQLMERLKPSMQHMFMKFYSAHL 137 (365)
T ss_dssp ECSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCC---HHHHHHHHHHHHHSCGGGGGGBCCEEEEEE
T ss_pred EECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCC---hhHHHHHHHHHHHhhhhhhhhhhhhheeee
Confidence 3445678888999999999999994 4468899999997643 457888888888887 999999999999
Q ss_pred eCCeEEEEEecCCCCCHHHHHhc
Q 004822 691 EEGEQMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 691 ~~~~~~lV~Ey~~~GsL~~~L~~ 713 (728)
..+..++|||||++|+|.++++.
T Consensus 138 ~~~~~~lv~e~~~~g~L~~~l~~ 160 (365)
T 3e7e_A 138 FQNGSVLVGELYSYGTLLNAINL 160 (365)
T ss_dssp CSSCEEEEECCCCSCBHHHHHHH
T ss_pred cCCCcEEEEeccCCCcHHHHHHH
Confidence 99999999999999999999974
No 268
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=99.11 E-value=1.1e-10 Score=121.30 Aligned_cols=88 Identities=25% Similarity=0.426 Sum_probs=73.1
Q ss_pred cCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhc--CCCCcccceeEEEEeC----CeEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDEE----GEQM 696 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~----~~~~ 696 (728)
.++|...+.||+|+||.||+|.. +|+.||||++... ..+.+.+|.+++.. ++||||+++++++... +..+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 35678889999999999999988 6899999998653 34566677777766 7999999999997652 4579
Q ss_pred EEEecCCCCCHHHHHhcC
Q 004822 697 LVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~ 714 (728)
+||||+++|+|.++++..
T Consensus 83 lv~e~~~~g~L~~~l~~~ 100 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQLT 100 (301)
T ss_dssp EEECCCTTCBHHHHHTTC
T ss_pred EehhhccCCCHHHHHhhc
Confidence 999999999999999754
No 269
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=99.11 E-value=1.2e-10 Score=120.74 Aligned_cols=93 Identities=23% Similarity=0.297 Sum_probs=79.7
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---------hcHHHHHHHHHHHhcCC-CCcccceeEEEEe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---------QGEKEFLTEIQFLSRLH-HRNLVSLVGYCDE 691 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---------~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~ 691 (728)
.++|...+.||+|+||.||+|... +|+.||||.++.... ...+.+.+|++++.+++ ||||+++++++..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 95 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET 95 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence 356888899999999999999964 588999999865421 12346889999999996 9999999999999
Q ss_pred CCeEEEEEecCCCCCHHHHHhcCC
Q 004822 692 EGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 692 ~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.+..++||||+++|+|.+++..+.
T Consensus 96 ~~~~~lv~e~~~~~~L~~~l~~~~ 119 (298)
T 1phk_A 96 NTFFFLVFDLMKKGELFDYLTEKV 119 (298)
T ss_dssp SSEEEEEEECCTTCBHHHHHHHHS
T ss_pred CCeEEEEEeccCCCcHHHHHhccC
Confidence 999999999999999999998653
No 270
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=99.11 E-value=8.3e-11 Score=125.18 Aligned_cols=89 Identities=28% Similarity=0.437 Sum_probs=76.4
Q ss_pred CcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 625 NFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
.|...+.||+|+||.||+|.. .+|+.||||++..... ...++|.+|++++++++|||||+++|++...+..++|||
T Consensus 55 ~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 134 (348)
T 1u5q_A 55 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVME 134 (348)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred heeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEEe
Confidence 366778999999999999985 5689999999975432 223579999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcC
Q 004822 701 FMSNGTLRDQLSGI 714 (728)
Q Consensus 701 y~~~GsL~~~L~~~ 714 (728)
|++ |+|.+++...
T Consensus 135 ~~~-g~l~~~l~~~ 147 (348)
T 1u5q_A 135 YCL-GSASDLLEVH 147 (348)
T ss_dssp CCS-EEHHHHHHHH
T ss_pred cCC-CCHHHHHHHh
Confidence 998 7899988643
No 271
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.11 E-value=3.5e-11 Score=131.49 Aligned_cols=93 Identities=23% Similarity=0.380 Sum_probs=76.4
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh--------hcHHHHHHHHHHHhcCCCCcccceeEEEEeCC
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 693 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~ 693 (728)
.++|...+.||+|+||.||+|... +++.||||++..... .....|.+|++++++++|||||++++++. .+
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~-~~ 212 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFD-AE 212 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEE-SS
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEe-cC
Confidence 467888899999999999999854 588999999864321 11224889999999999999999999975 55
Q ss_pred eEEEEEecCCCCCHHHHHhcCCC
Q 004822 694 EQMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 694 ~~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
..++|||||++|+|.+++.....
T Consensus 213 ~~~lv~e~~~~g~L~~~l~~~~~ 235 (419)
T 3i6u_A 213 DYYIVLELMEGGELFDKVVGNKR 235 (419)
T ss_dssp EEEEEEECCTTCBGGGGTSSSCC
T ss_pred ceEEEEEcCCCCcHHHHHhccCC
Confidence 68999999999999999876543
No 272
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=99.11 E-value=1.3e-10 Score=121.08 Aligned_cols=91 Identities=24% Similarity=0.364 Sum_probs=79.8
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
+.|...+.||+|+||.||+|.. .+++.||||.+.... ....+.+.+|+.++++++||||+++++++...+..++||||
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 101 (303)
T 3a7i_A 22 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY 101 (303)
T ss_dssp GTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred HHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEEe
Confidence 4577789999999999999985 458899999996543 23456899999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcC
Q 004822 702 MSNGTLRDQLSGI 714 (728)
Q Consensus 702 ~~~GsL~~~L~~~ 714 (728)
+++|+|.+++...
T Consensus 102 ~~~~~L~~~~~~~ 114 (303)
T 3a7i_A 102 LGGGSALDLLEPG 114 (303)
T ss_dssp CTTEEHHHHHTTS
T ss_pred CCCCcHHHHHhcC
Confidence 9999999999753
No 273
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=99.11 E-value=3.3e-11 Score=125.22 Aligned_cols=91 Identities=29% Similarity=0.427 Sum_probs=72.6
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChh--------------------------cHHHHHHHHHHHh
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ--------------------------GEKEFLTEIQFLS 675 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--------------------------~~~~f~~E~~~l~ 675 (728)
.++|...+.||+|+||.||+|.. .+++.||||++...... ..++|.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 35688889999999999999985 45889999998653211 1246899999999
Q ss_pred cCCCCcccceeEEEEe--CCeEEEEEecCCCCCHHHHHhc
Q 004822 676 RLHHRNLVSLVGYCDE--EGEQMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 676 ~l~H~niv~l~g~~~~--~~~~~lV~Ey~~~GsL~~~L~~ 713 (728)
+++|||||++++++.. .+..++||||+++|+|.+++..
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~ 131 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL 131 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc
Confidence 9999999999999986 5678999999999999886543
No 274
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=99.11 E-value=6.8e-11 Score=123.77 Aligned_cols=92 Identities=25% Similarity=0.338 Sum_probs=75.6
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|+..++||+|+||+||+|... +|+.||||++.... .....++..|+..+.++ +|+|||+++++|...+..++||
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~ 136 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT 136 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence 45888899999999999999975 68999999986532 23334566777666666 9999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+ +|+|.+++.....
T Consensus 137 e~~-~~~L~~~~~~~~~ 152 (311)
T 3p1a_A 137 ELC-GPSLQQHCEAWGA 152 (311)
T ss_dssp ECC-CCBHHHHHHHHCS
T ss_pred ecc-CCCHHHHHHhcCC
Confidence 999 6799999886543
No 275
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.2e-10 Score=121.83 Aligned_cols=92 Identities=18% Similarity=0.264 Sum_probs=80.6
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChh---cHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~---~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|... +++.||||.+...... ..+.|.+|+.++++++||||+++++++...+..++||
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 113 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVDM 113 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEEE
Confidence 56888899999999999999964 5889999999754322 2367999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.+++....
T Consensus 114 e~~~~~~L~~~l~~~~ 129 (309)
T 2h34_A 114 RLINGVDLAAMLRRQG 129 (309)
T ss_dssp ECCCCEEHHHHHHHHC
T ss_pred EecCCCCHHHHHHhcC
Confidence 9999999999998643
No 276
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=99.11 E-value=8e-11 Score=125.42 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=80.5
Q ss_pred hcCCcccCCceeccCceEEEEEEeCC-CCEEEEEEcccCC---hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~ 696 (728)
...+|...++||+|+||.||+|.... |+.||||+++... ....+.+.+|..++..+ +||||+++++++...+..+
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 34678888999999999999999754 7899999997532 12345688999999988 8999999999999999999
Q ss_pred EEEecCCCCCHHHHHhcCCC
Q 004822 697 LVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+||||+++|+|.+++.....
T Consensus 98 lv~E~~~gg~L~~~l~~~~~ 117 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQQVGR 117 (353)
T ss_dssp EEEECCCSCBHHHHHHHHSS
T ss_pred EEEeCCCCCcHHHHHHhcCC
Confidence 99999999999999986443
No 277
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=99.10 E-value=1.2e-10 Score=123.15 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=79.6
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccC---ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.+|...+.||+|+||.||++... +++.||+|.+... .....+.+.+|+.++++++|+||+++++++...+..++||
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 120 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL 120 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEE
Confidence 45777899999999999999965 4789999998653 2234467999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.+++....
T Consensus 121 e~~~~~~L~~~~~~~~ 136 (335)
T 2owb_A 121 ELCRRRSLLELHKRRK 136 (335)
T ss_dssp CCCTTCBHHHHHHHHC
T ss_pred ecCCCCCHHHHHhccC
Confidence 9999999999987643
No 278
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=99.10 E-value=8.5e-11 Score=131.14 Aligned_cols=93 Identities=24% Similarity=0.363 Sum_probs=80.1
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
+.|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++|||||++++++...+..++|||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 101 (486)
T 3mwu_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (486)
T ss_dssp HHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred cceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEEE
Confidence 34777899999999999999864 68999999986421 2235679999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCCC
Q 004822 701 FMSNGTLRDQLSGIFS 716 (728)
Q Consensus 701 y~~~GsL~~~L~~~~~ 716 (728)
|+++|+|.+++.....
T Consensus 102 ~~~~~~L~~~~~~~~~ 117 (486)
T 3mwu_A 102 LYTGGELFDEIIKRKR 117 (486)
T ss_dssp CCCSCBHHHHHHHHSS
T ss_pred cCCCCcHHHHHHhcCC
Confidence 9999999999976543
No 279
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.1e-10 Score=126.08 Aligned_cols=93 Identities=24% Similarity=0.485 Sum_probs=79.4
Q ss_pred cCCcccCCceeccCceEEEEEEeC--------CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeC
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP--------DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEE 692 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~--------~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~ 692 (728)
.++|...+.||+|+||.||+|... .+..||||+++... ....+++.+|+++++++ +|||||++++++...
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 356777899999999999999852 23579999997643 33346799999999999 999999999999999
Q ss_pred CeEEEEEecCCCCCHHHHHhcCC
Q 004822 693 GEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 693 ~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
+..++||||+++|+|.+++....
T Consensus 148 ~~~~lv~e~~~~g~L~~~l~~~~ 170 (382)
T 3tt0_A 148 GPLYVIVEYASKGNLREYLQARR 170 (382)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTC
T ss_pred CceEEEEEecCCCcHHHHHHHhc
Confidence 99999999999999999998653
No 280
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=99.10 E-value=1.5e-10 Score=119.57 Aligned_cols=90 Identities=28% Similarity=0.414 Sum_probs=75.4
Q ss_pred cccCCceeccCceEEEEEEeC-CCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEe----CCeEEEE
Q 004822 626 FNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----EGEQMLV 698 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----~~~~~lV 698 (728)
|...+.||+|+||.||+|... ++..||+|.+... .....+.|.+|+.++++++|||||++++++.. ....++|
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv 107 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence 556678999999999999864 5789999998653 23345679999999999999999999999865 3458999
Q ss_pred EecCCCCCHHHHHhcCC
Q 004822 699 YEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~ 715 (728)
|||+++|+|.+++....
T Consensus 108 ~e~~~~~~L~~~l~~~~ 124 (290)
T 1t4h_A 108 TELMTSGTLKTYLKRFK 124 (290)
T ss_dssp EECCCSCBHHHHHHHHS
T ss_pred EEecCCCCHHHHHHHcc
Confidence 99999999999998643
No 281
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=99.10 E-value=8e-11 Score=120.98 Aligned_cols=93 Identities=25% Similarity=0.443 Sum_probs=79.6
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
.++|...+.||+|+||.||+|... ++..||||++..... ...+.+.+|++++++++||||+++++++...+..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 87 (279)
T 3fdn_A 8 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI 87 (279)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEEE
Confidence 456778899999999999999864 477999999864321 2245789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhcCC
Q 004822 699 YEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~ 715 (728)
|||+++|+|.+++....
T Consensus 88 ~e~~~~~~l~~~l~~~~ 104 (279)
T 3fdn_A 88 LEYAPLGTVYRELQKLS 104 (279)
T ss_dssp ECCCTTEEHHHHHHHHS
T ss_pred EecCCCCcHHHHHHhcC
Confidence 99999999999997643
No 282
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=99.10 E-value=7.1e-11 Score=121.57 Aligned_cols=92 Identities=25% Similarity=0.393 Sum_probs=77.2
Q ss_pred cCCcccCCceeccCceEEEEEEeCC----CCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
.++|...+.||+|+||.||+|.... +..||||.+.... ....+.|.+|+.++++++|||||++++++ ..+..++
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~~~~~l 92 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TENPVWI 92 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CSSSCEE
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-ccCccEE
Confidence 3567788999999999999998643 4579999987643 33346799999999999999999999998 4567899
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
||||+++|+|.+++....
T Consensus 93 v~e~~~~~~L~~~l~~~~ 110 (281)
T 1mp8_A 93 IMELCTLGELRSFLQVRK 110 (281)
T ss_dssp EEECCTTEEHHHHHHHTT
T ss_pred EEecCCCCCHHHHHHhcC
Confidence 999999999999998654
No 283
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=99.10 E-value=1.9e-10 Score=118.68 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=78.3
Q ss_pred CcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEecC
Q 004822 625 NFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
.|...+.||+|+||.||++... ++..||+|++.... ....+.+.+|++++++++||||+++++++...+..++||||+
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~ 102 (285)
T 3is5_A 23 LFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMETC 102 (285)
T ss_dssp HEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECCC
T ss_pred heeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEeC
Confidence 4777899999999999999864 58899999986543 234568999999999999999999999999999999999999
Q ss_pred CCCCHHHHHhc
Q 004822 703 SNGTLRDQLSG 713 (728)
Q Consensus 703 ~~GsL~~~L~~ 713 (728)
++|+|.+++..
T Consensus 103 ~~~~L~~~l~~ 113 (285)
T 3is5_A 103 EGGELLERIVS 113 (285)
T ss_dssp SCCBHHHHHHH
T ss_pred CCCcHHHHHHh
Confidence 99999999964
No 284
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=99.10 E-value=9.5e-11 Score=123.21 Aligned_cols=97 Identities=25% Similarity=0.428 Sum_probs=73.2
Q ss_pred HHHhhcCCcccCCceeccCceEEEEEEeCC-C---CEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEe
Q 004822 618 EMALATNNFNSSTQIGQGGYGKVYKGILPD-G---TVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE 691 (728)
Q Consensus 618 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~-g---~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~ 691 (728)
+.....++|...+.||+|+||.||+|.... + ..||||.++.. .....++|.+|++++++++|||||++++++..
T Consensus 17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~ 96 (323)
T 3qup_A 17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLR 96 (323)
T ss_dssp TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEEC
T ss_pred hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeec
Confidence 334455678889999999999999998654 3 27999999754 23345689999999999999999999999987
Q ss_pred CCeE------EEEEecCCCCCHHHHHhcC
Q 004822 692 EGEQ------MLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 692 ~~~~------~lV~Ey~~~GsL~~~L~~~ 714 (728)
.+.. ++||||+++|+|.+++...
T Consensus 97 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~ 125 (323)
T 3qup_A 97 SRAKGRLPIPMVILPFMKHGDLHAFLLAS 125 (323)
T ss_dssp C-------CEEEEEECCTTCBHHHHHHHH
T ss_pred cccccCCCccEEEEEeccCCcHHHHHHhh
Confidence 6654 9999999999999999643
No 285
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=99.10 E-value=1.1e-10 Score=131.42 Aligned_cols=93 Identities=27% Similarity=0.411 Sum_probs=80.5
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
.++|...++||+|+||.||+|... +|+.||||++.... ....+.+.+|+.++.+++|||||++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 456888899999999999999864 68999999996532 12345689999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhcCC
Q 004822 699 YEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~ 715 (728)
||||++|+|.+++....
T Consensus 263 mEy~~gg~L~~~l~~~~ 279 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHMG 279 (576)
T ss_dssp ECCCCSCBHHHHHHSSS
T ss_pred EEcCCCCcHHHHHHhcC
Confidence 99999999999998643
No 286
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=99.10 E-value=2.2e-10 Score=119.62 Aligned_cols=90 Identities=28% Similarity=0.466 Sum_probs=77.4
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC---ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG---SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.+|...+.||+|+||.||+|.. .+|+.||||+++.. .....++|.+|+.++++++||||+++++++...+..++||
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 111 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL 111 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEEE
Confidence 4688889999999999999985 46899999999753 2333467999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhc
Q 004822 700 EFMSNGTLRDQLSG 713 (728)
Q Consensus 700 Ey~~~GsL~~~L~~ 713 (728)
||+++|+|.+++..
T Consensus 112 e~~~~~~L~~~l~~ 125 (310)
T 2wqm_A 112 ELADAGDLSRMIKH 125 (310)
T ss_dssp ECCCSCBHHHHHHH
T ss_pred ecCCCCCHHHHHHH
Confidence 99999999999974
No 287
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=99.10 E-value=1.3e-10 Score=120.28 Aligned_cols=90 Identities=28% Similarity=0.450 Sum_probs=75.8
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
++|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|++++++++|||||++++++...+..++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 35778899999999999999964 589999999965332 234678999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcC
Q 004822 701 FMSNGTLRDQLSGI 714 (728)
Q Consensus 701 y~~~GsL~~~L~~~ 714 (728)
|+++ ++.+++...
T Consensus 82 ~~~~-~l~~~~~~~ 94 (292)
T 3o0g_A 82 FCDQ-DLKKYFDSC 94 (292)
T ss_dssp CCSE-EHHHHHHHT
T ss_pred cCCC-CHHHHHHhC
Confidence 9985 666666543
No 288
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=99.09 E-value=7.8e-11 Score=121.56 Aligned_cols=94 Identities=37% Similarity=0.543 Sum_probs=77.1
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhc-------HHHHHHHHHHHhcCCCCcccceeEEEEeCCe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQG-------EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~-------~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~ 694 (728)
.++|...+.||+|+||.||+|.. .+++.||||++....... .++|.+|++++++++||||+++++++....
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 35677889999999999999996 468999999986533221 157999999999999999999999985443
Q ss_pred EEEEEecCCCCCHHHHHhcCCCcc
Q 004822 695 QMLVYEFMSNGTLRDQLSGIFSVI 718 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~~~~ 718 (728)
++||||+++|+|.+++..+....
T Consensus 97 -~lv~e~~~~~~L~~~l~~~~~~~ 119 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLDKAHPI 119 (287)
T ss_dssp -EEEEECCTTCBHHHHHHCTTSCC
T ss_pred -eEEEEecCCCCHHHHHhcccCCc
Confidence 79999999999999997655433
No 289
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=99.09 E-value=8.4e-11 Score=125.78 Aligned_cols=104 Identities=27% Similarity=0.336 Sum_probs=85.2
Q ss_pred chHHHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCCh-----------hcHHHHHHHHHHHhcCCCCccc
Q 004822 615 TYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL-----------QGEKEFLTEIQFLSRLHHRNLV 683 (728)
Q Consensus 615 ~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~-----------~~~~~f~~E~~~l~~l~H~niv 683 (728)
...++....++|...+.||+|+||.||+|...+|..||||++..... ...+.|.+|++++++++|||||
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 35667778899999999999999999999987899999999854221 1136799999999999999999
Q ss_pred ceeEEEEeC-----CeEEEEEecCCCCCHHHHHhcCCCccc
Q 004822 684 SLVGYCDEE-----GEQMLVYEFMSNGTLRDQLSGIFSVIR 719 (728)
Q Consensus 684 ~l~g~~~~~-----~~~~lV~Ey~~~GsL~~~L~~~~~~~~ 719 (728)
++++++... ...++||||++ |+|.+++........
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~ 132 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVIS 132 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCC
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCC
Confidence 999998653 35799999999 799999986543333
No 290
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=99.09 E-value=7.1e-11 Score=124.95 Aligned_cols=92 Identities=22% Similarity=0.297 Sum_probs=78.5
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|+.+++.++|||||++++++...+..++||
T Consensus 9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 88 (336)
T 3h4j_B 9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI 88 (336)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 5677889999999999999995 5689999999864321 12347899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+ +|+|.+++.....
T Consensus 89 E~~-~g~l~~~l~~~~~ 104 (336)
T 3h4j_B 89 EYA-GGELFDYIVEKKR 104 (336)
T ss_dssp CCC-CEEHHHHHHHHCS
T ss_pred ECC-CCcHHHHHHHcCC
Confidence 999 7899999976543
No 291
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=99.09 E-value=3.3e-10 Score=118.90 Aligned_cols=90 Identities=29% Similarity=0.479 Sum_probs=76.8
Q ss_pred cccCCceeccCceEEEEEEeC-----CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeC--CeEEE
Q 004822 626 FNSSTQIGQGGYGKVYKGILP-----DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE--GEQML 697 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~~-----~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~--~~~~l 697 (728)
|...+.||+|+||.||++.+. +++.||||++.... ....+.|.+|++++++++|||||++++++... ...++
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l 112 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEE
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEE
Confidence 467789999999999998753 57889999997643 23356799999999999999999999999874 57899
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
||||+++|+|.+++....
T Consensus 113 v~e~~~~~~L~~~l~~~~ 130 (318)
T 3lxp_A 113 VMEYVPLGSLRDYLPRHS 130 (318)
T ss_dssp EECCCTTCBHHHHGGGSC
T ss_pred EEecccCCcHHHHHhhCC
Confidence 999999999999998653
No 292
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=99.08 E-value=1.7e-10 Score=121.03 Aligned_cols=91 Identities=30% Similarity=0.515 Sum_probs=65.6
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
.++|...+.||+|+||.||+|... +|+.||||+++.... ...+.+.+|++++++++|||||++++++..++..++|||
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 83 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE 83 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence 356788899999999999999854 589999999975432 233578999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcC
Q 004822 701 FMSNGTLRDQLSGI 714 (728)
Q Consensus 701 y~~~GsL~~~L~~~ 714 (728)
|++ |+|.+++...
T Consensus 84 ~~~-~~L~~~l~~~ 96 (317)
T 2pmi_A 84 FMD-NDLKKYMDSR 96 (317)
T ss_dssp CCC-CBHHHHHHHH
T ss_pred ecC-CCHHHHHHhc
Confidence 999 6999999753
No 293
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=99.08 E-value=1.2e-10 Score=120.94 Aligned_cols=91 Identities=25% Similarity=0.388 Sum_probs=77.5
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEe-----------
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----------- 691 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----------- 691 (728)
++|...+.||+|+||.||+|.. .+|+.||||++... ....+.+.+|++++++++||||+++++++..
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 84 (303)
T 1zy4_A 6 SDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTAV 84 (303)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC-----
T ss_pred ccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhccc
Confidence 4577889999999999999995 46899999999653 2334679999999999999999999999865
Q ss_pred --CCeEEEEEecCCCCCHHHHHhcCC
Q 004822 692 --EGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 692 --~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.+..++||||+++|+|.++++...
T Consensus 85 ~~~~~~~lv~e~~~~~~L~~~l~~~~ 110 (303)
T 1zy4_A 85 KKKSTLFIQMEYCENGTLYDLIHSEN 110 (303)
T ss_dssp -CEEEEEEEEECCCSCBHHHHHHHSC
T ss_pred ccCCceEEEEecCCCCCHHHhhhccc
Confidence 356799999999999999998644
No 294
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=99.08 E-value=1.6e-10 Score=125.23 Aligned_cols=92 Identities=26% Similarity=0.392 Sum_probs=78.6
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeCC--eEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG--EQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~--~~~lV~ 699 (728)
..|...++||+|+||.||+|... +|+.||||++..... ...+.+.+|++++++++|||||++++++...+ ..++||
T Consensus 9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~ 88 (396)
T 4eut_A 9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM 88 (396)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence 45777889999999999999965 489999999975432 33567899999999999999999999998755 679999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.+++....
T Consensus 89 e~~~~g~L~~~l~~~~ 104 (396)
T 4eut_A 89 EFCPCGSLYTVLEEPS 104 (396)
T ss_dssp CCCTTEEHHHHTTSGG
T ss_pred ecCCCCCHHHHHHhhh
Confidence 9999999999998643
No 295
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=99.08 E-value=8.9e-11 Score=123.42 Aligned_cols=92 Identities=25% Similarity=0.393 Sum_probs=74.5
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh--------hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--------QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--------~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~ 694 (728)
++|...+.||+|+||.||+|... +++.||||.+..... .....|.+|++++++++||||+++++++...+
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 88 (322)
T 2ycf_A 10 DEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED- 88 (322)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS-
T ss_pred hceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc-
Confidence 45778899999999999999864 578999999865321 11235889999999999999999999987654
Q ss_pred EEEEEecCCCCCHHHHHhcCCC
Q 004822 695 QMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
.++||||+++|+|.+++.....
T Consensus 89 ~~lv~e~~~~~~L~~~~~~~~~ 110 (322)
T 2ycf_A 89 YYIVLELMEGGELFDKVVGNKR 110 (322)
T ss_dssp EEEEEECCTTEETHHHHSTTCC
T ss_pred eEEEEecCCCCcHHHHHhccCC
Confidence 8999999999999999986543
No 296
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=99.07 E-value=7.5e-11 Score=126.62 Aligned_cols=93 Identities=25% Similarity=0.344 Sum_probs=71.4
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHH-HhcCCCCcccceeEEEEeCCeEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQF-LSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
++|...++||+|+||.||+|+.+ +++.||||+++.... ...+.+.+|..+ ++.++|||||++++++...+..|+|
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~lv 117 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFV 117 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEEE
Confidence 46888899999999999999965 488999999975432 223456777776 5778999999999999999999999
Q ss_pred EecCCCCCHHHHHhcCCC
Q 004822 699 YEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~~ 716 (728)
|||+++|+|.+++.....
T Consensus 118 ~E~~~gg~L~~~l~~~~~ 135 (373)
T 2r5t_A 118 LDYINGGELFYHLQRERC 135 (373)
T ss_dssp EECCCSCBHHHHHHHHSS
T ss_pred EeCCCCCcHHHHHHhcCC
Confidence 999999999999986543
No 297
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=99.07 E-value=1.3e-10 Score=122.43 Aligned_cols=93 Identities=31% Similarity=0.509 Sum_probs=77.7
Q ss_pred cCCcccCCceeccCceEEEEEEe------CCCCEEEEEEcccC-ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 695 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~ 695 (728)
.++|...+.||+|+||.||+|.. .++..||||.+... .....++|.+|+.++++++||||+++++++...+..
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 108 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 108 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCc
Confidence 45688889999999999999984 24678999999754 334456799999999999999999999999988899
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+++|+|.+++....
T Consensus 109 ~lv~e~~~~~~L~~~l~~~~ 128 (327)
T 2yfx_A 109 FILMELMAGGDLKSFLRETR 128 (327)
T ss_dssp EEEEECCTTEEHHHHHHHTS
T ss_pred EEEEecCCCCcHHHHHHhhc
Confidence 99999999999999998653
No 298
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=99.07 E-value=1.2e-10 Score=122.90 Aligned_cols=93 Identities=25% Similarity=0.441 Sum_probs=77.4
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChh--cHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.++|...+.||+|+||.||+|.. .+++.||||+++..... ..+.+.+|++++++++|||||++++++...+..++||
T Consensus 33 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ 112 (329)
T 3gbz_A 33 IDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIF 112 (329)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEEEE
Confidence 45688889999999999999984 46889999999754332 2356889999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||++ |+|.+++.....
T Consensus 113 e~~~-~~L~~~~~~~~~ 128 (329)
T 3gbz_A 113 EYAE-NDLKKYMDKNPD 128 (329)
T ss_dssp ECCS-EEHHHHHHHCTT
T ss_pred ecCC-CCHHHHHhhcCC
Confidence 9998 599999987543
No 299
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=99.07 E-value=9.5e-11 Score=120.07 Aligned_cols=92 Identities=26% Similarity=0.370 Sum_probs=79.9
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
++|...+.||+|+||.||+|... +++.||||.+.... ....+.+.+|+.+++.++||||+++++++...+..++||||
T Consensus 7 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 86 (276)
T 2yex_A 7 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY 86 (276)
T ss_dssp HHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEEe
Confidence 45777889999999999999965 68999999986432 23346799999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCC
Q 004822 702 MSNGTLRDQLSGIF 715 (728)
Q Consensus 702 ~~~GsL~~~L~~~~ 715 (728)
+++|+|.+++....
T Consensus 87 ~~~~~L~~~l~~~~ 100 (276)
T 2yex_A 87 CSGGELFDRIEPDI 100 (276)
T ss_dssp CTTEEGGGGSBTTT
T ss_pred cCCCcHHHHHhhcc
Confidence 99999999987653
No 300
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=99.07 E-value=1.4e-10 Score=120.08 Aligned_cols=93 Identities=27% Similarity=0.391 Sum_probs=75.2
Q ss_pred cCCcccCC-ceeccCceEEEEEEe---CCCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEE
Q 004822 623 TNNFNSST-QIGQGGYGKVYKGIL---PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 623 ~~~~~~~~-~iG~G~fg~Vy~~~~---~~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 696 (728)
...|...+ .||+|+||.||+|.. ..++.||||+++.... ...++|.+|++++++++||||+++++++ ..+..+
T Consensus 15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~~ 93 (291)
T 1xbb_A 15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESWM 93 (291)
T ss_dssp GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSEE
T ss_pred chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCcE
Confidence 34566666 899999999999964 2367899999975432 2246799999999999999999999999 567789
Q ss_pred EEEecCCCCCHHHHHhcCCC
Q 004822 697 LVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+||||+++|+|.+++.....
T Consensus 94 lv~e~~~~~~L~~~l~~~~~ 113 (291)
T 1xbb_A 94 LVMEMAELGPLNKYLQQNRH 113 (291)
T ss_dssp EEEECCTTEEHHHHHHHCTT
T ss_pred EEEEeCCCCCHHHHHHhCcC
Confidence 99999999999999987543
No 301
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=99.07 E-value=2.4e-10 Score=122.45 Aligned_cols=94 Identities=20% Similarity=0.306 Sum_probs=80.1
Q ss_pred hcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh----h----cHHHHHHHHHHHhcC-CCCcccceeEEEEe
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL----Q----GEKEFLTEIQFLSRL-HHRNLVSLVGYCDE 691 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~----~----~~~~f~~E~~~l~~l-~H~niv~l~g~~~~ 691 (728)
...+|...+.||+|+||.||+|... +|+.||||+++.... . ..+.+.+|+.++.++ +||||+++++++..
T Consensus 92 ~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 171 (365)
T 2y7j_A 92 FYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYES 171 (365)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEB
T ss_pred hhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEee
Confidence 3456888899999999999999975 699999999865431 1 134688999999999 89999999999999
Q ss_pred CCeEEEEEecCCCCCHHHHHhcCC
Q 004822 692 EGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 692 ~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.+..++||||+++|+|.+++....
T Consensus 172 ~~~~~lv~e~~~g~~L~~~l~~~~ 195 (365)
T 2y7j_A 172 SSFMFLVFDLMRKGELFDYLTEKV 195 (365)
T ss_dssp SSEEEEEECCCTTCBHHHHHHHHS
T ss_pred CCEEEEEEEeCCCCcHHHHHHhcC
Confidence 999999999999999999998643
No 302
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=99.07 E-value=1.5e-10 Score=122.81 Aligned_cols=89 Identities=25% Similarity=0.335 Sum_probs=76.4
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
++|...+.||+|+||.||+|..+ +|+.||||.+..... ++.+|++++.++ +|||||++++++.+.+..++||||
T Consensus 22 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~ 97 (342)
T 2qr7_A 22 DGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVTEL 97 (342)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECC
T ss_pred ccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEEeC
Confidence 45778899999999999999864 588999999976432 345788888888 799999999999999999999999
Q ss_pred CCCCCHHHHHhcCCC
Q 004822 702 MSNGTLRDQLSGIFS 716 (728)
Q Consensus 702 ~~~GsL~~~L~~~~~ 716 (728)
+++|+|.+++.....
T Consensus 98 ~~gg~L~~~i~~~~~ 112 (342)
T 2qr7_A 98 MKGGELLDKILRQKF 112 (342)
T ss_dssp CCSCBHHHHHHTCTT
T ss_pred CCCCcHHHHHHHcCC
Confidence 999999999987643
No 303
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=99.07 E-value=1.1e-10 Score=125.56 Aligned_cols=91 Identities=33% Similarity=0.552 Sum_probs=75.1
Q ss_pred cccCCceeccCceEEEEEEeC--CC--CEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEe-CCeEEEEE
Q 004822 626 FNSSTQIGQGGYGKVYKGILP--DG--TVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE-EGEQMLVY 699 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~~--~g--~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lV~ 699 (728)
|...+.||+|+||.||+|... ++ ..||||.++... ....++|.+|+.++++++|||||+++++|.. ++..++||
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~ 170 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL 170 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEE
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEE
Confidence 455678999999999999863 22 368999997533 3445689999999999999999999999864 45789999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.++++....
T Consensus 171 e~~~~g~L~~~l~~~~~ 187 (373)
T 3c1x_A 171 PYMKHGDLRNFIRNETH 187 (373)
T ss_dssp ECCTTCBHHHHHHCTTC
T ss_pred ECCCCCCHHHHHhhccc
Confidence 99999999999986544
No 304
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=99.07 E-value=2.8e-10 Score=116.58 Aligned_cols=92 Identities=23% Similarity=0.344 Sum_probs=69.5
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|.. .+|+.||||++..... ...+.+.+|++++++++||||+++++++...+..++||
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEEE
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEEe
Confidence 4688889999999999999985 4689999999875422 23457899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+ +|+|.+++.....
T Consensus 93 e~~-~~~l~~~~~~~~~ 108 (275)
T 2eue_A 93 EYA-GNELFDYIVQRDK 108 (275)
T ss_dssp ECC-CEEHHHHHHTSSS
T ss_pred hhc-CCcHHHHHHhcCC
Confidence 999 6789998876543
No 305
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=99.07 E-value=1.4e-10 Score=121.48 Aligned_cols=90 Identities=28% Similarity=0.389 Sum_probs=72.9
Q ss_pred CCcccCCceeccCceEEEEEEeCC-CCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEE------------
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPD-GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCD------------ 690 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~-g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~------------ 690 (728)
++|...+.||+|+||.||+|.... |+.||||++........+++.+|++++++++|||||++++++.
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~ 90 (320)
T 2i6l_A 11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS 90 (320)
T ss_dssp TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence 567788999999999999999754 8999999998766666678999999999999999999999873
Q ss_pred --eCCeEEEEEecCCCCCHHHHHhcC
Q 004822 691 --EEGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 691 --~~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
..+..++||||++ |+|.+++...
T Consensus 91 ~~~~~~~~lv~e~~~-~~L~~~~~~~ 115 (320)
T 2i6l_A 91 LTELNSVYIVQEYME-TDLANVLEQG 115 (320)
T ss_dssp CCSCSEEEEEEECCS-EEHHHHHTTC
T ss_pred ccccCceeEEeeccC-CCHHHHhhcC
Confidence 3467899999998 7999999764
No 306
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=99.07 E-value=1.2e-10 Score=119.88 Aligned_cols=92 Identities=24% Similarity=0.407 Sum_probs=79.3
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|... +++.||||.+.... ....+.+.+|++++++++||||+++++++...+..++||
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 93 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML 93 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence 45777899999999999999865 47889999986432 122467999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCC
Q 004822 700 EFMSNGTLRDQLSGIF 715 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~ 715 (728)
||+++|+|.+++....
T Consensus 94 e~~~~~~L~~~l~~~~ 109 (284)
T 2vgo_A 94 EFAPRGELYKELQKHG 109 (284)
T ss_dssp CCCTTEEHHHHHHHHS
T ss_pred EeCCCCcHHHHHHhcC
Confidence 9999999999998653
No 307
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=99.06 E-value=1.9e-10 Score=120.27 Aligned_cols=102 Identities=25% Similarity=0.496 Sum_probs=84.2
Q ss_pred cchHHHHhhcCCcccCCceeccCceEEEEEEe------CCCCEEEEEEcccCCh-hcHHHHHHHHHHHhcC-CCCcccce
Q 004822 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGIL------PDGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRL-HHRNLVSL 685 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~------~~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l-~H~niv~l 685 (728)
+...++....++|...+.||+|+||.||+|.. .+++.||||.++.... ...+.+.+|++++.++ +||||+++
T Consensus 17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 96 (316)
T 2xir_A 17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 96 (316)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence 34455556677899999999999999999984 3467899999976433 3346799999999999 79999999
Q ss_pred eEEEEeCC-eEEEEEecCCCCCHHHHHhcCC
Q 004822 686 VGYCDEEG-EQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 686 ~g~~~~~~-~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++++...+ ..++||||+++|+|.+++....
T Consensus 97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~ 127 (316)
T 2xir_A 97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKR 127 (316)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHTCT
T ss_pred EEEEecCCCceEEEEEcCCCCcHHHHHHhcc
Confidence 99997654 5899999999999999998754
No 308
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=99.05 E-value=1.7e-10 Score=120.66 Aligned_cols=90 Identities=26% Similarity=0.469 Sum_probs=74.3
Q ss_pred hcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
..+.|...+.||+|+||.||+|... +|+.||||.+.... ..+++.+|+.++.+++||||+++++++...+..++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 3456888899999999999999865 48999999997543 23578999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhc
Q 004822 701 FMSNGTLRDQLSG 713 (728)
Q Consensus 701 y~~~GsL~~~L~~ 713 (728)
|+++|+|.+++..
T Consensus 105 ~~~~~~L~~~~~~ 117 (314)
T 3com_A 105 YCGAGSVSDIIRL 117 (314)
T ss_dssp CCTTEEHHHHHHH
T ss_pred cCCCCCHHHHHHh
Confidence 9999999999974
No 309
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=99.05 E-value=3.4e-10 Score=116.18 Aligned_cols=90 Identities=23% Similarity=0.403 Sum_probs=77.6
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEe--CCeEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGEQMLV 698 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lV 698 (728)
++|...+.||+|+||.||+|... +|+.||+|.+.... ....+.|.+|++++++++||||+++++++.. .+..++|
T Consensus 6 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv 85 (279)
T 2w5a_A 6 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV 85 (279)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEEE
T ss_pred hheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEEE
Confidence 46778899999999999999864 68999999997543 2334679999999999999999999998865 5678999
Q ss_pred EecCCCCCHHHHHhc
Q 004822 699 YEFMSNGTLRDQLSG 713 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~ 713 (728)
|||+++|+|.+++..
T Consensus 86 ~e~~~~~~L~~~l~~ 100 (279)
T 2w5a_A 86 MEYCEGGDLASVITK 100 (279)
T ss_dssp EECCTTEEHHHHHHH
T ss_pred EeCCCCCCHHHHHHh
Confidence 999999999999975
No 310
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=99.05 E-value=2.3e-10 Score=120.62 Aligned_cols=92 Identities=27% Similarity=0.499 Sum_probs=72.3
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCC----EEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGT----VVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
.+|...+.||+|+||.||+|... +++ .||+|.+.... ....++|.+|+.++++++|||||+++++|... ..++
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~ 93 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL 93 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-SEEE
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeEE
Confidence 45778899999999999999853 344 46888886432 33456899999999999999999999999865 4789
Q ss_pred EEecCCCCCHHHHHhcCCC
Q 004822 698 VYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~~ 716 (728)
|+||+++|+|.++++....
T Consensus 94 v~e~~~~g~L~~~l~~~~~ 112 (327)
T 3poz_A 94 ITQLMPFGCLLDYVREHKD 112 (327)
T ss_dssp EEECCTTCBHHHHHHHSTT
T ss_pred EEEecCCCcHHHHHHhcCC
Confidence 9999999999999987543
No 311
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=99.05 E-value=2.5e-10 Score=120.57 Aligned_cols=89 Identities=26% Similarity=0.430 Sum_probs=74.4
Q ss_pred hcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcC--CCCcccceeEEEEeC----CeE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL--HHRNLVSLVGYCDEE----GEQ 695 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l--~H~niv~l~g~~~~~----~~~ 695 (728)
..++|...+.||+|+||.||+|+.. |+.||||++... ....+.+|.+++... +||||+++++++... ...
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 110 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQL 110 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEE
T ss_pred cccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCce
Confidence 3456888999999999999999985 899999998643 234556666666655 999999999999887 689
Q ss_pred EEEEecCCCCCHHHHHhcC
Q 004822 696 MLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~ 714 (728)
++||||+++|+|.++++..
T Consensus 111 ~lv~e~~~~g~L~~~l~~~ 129 (337)
T 3mdy_A 111 YLITDYHENGSLYDYLKST 129 (337)
T ss_dssp EEEECCCTTCBHHHHHHHC
T ss_pred EEEEeccCCCcHHHHhhcc
Confidence 9999999999999999764
No 312
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=99.05 E-value=2e-10 Score=126.12 Aligned_cols=92 Identities=26% Similarity=0.374 Sum_probs=78.1
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeC-----Ce
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GE 694 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~ 694 (728)
.++|...+.||+|+||.||+|... +|+.||||++... .....+.+.+|++++++++|+|||++++++... +.
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 457888899999999999999854 5889999999753 223346799999999999999999999999765 56
Q ss_pred EEEEEecCCCCCHHHHHhcCC
Q 004822 695 QMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.++|||||+ |+|.+++....
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~ 124 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI 124 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC
T ss_pred EEEEEecCC-cCHHHHHhccC
Confidence 899999998 69999998754
No 313
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=99.05 E-value=2.5e-10 Score=118.38 Aligned_cols=92 Identities=32% Similarity=0.508 Sum_probs=75.5
Q ss_pred CcccCCceeccCceEEEEEEeCC----CCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEe-CCeEEEE
Q 004822 625 NFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE-EGEQMLV 698 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~-~~~~~lV 698 (728)
.|...+.||+|+||.||+|...+ +..||||.+.... ....+.|.+|++++++++|||||+++++|.. ++..++|
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 105 (298)
T 3f66_A 26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV 105 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred ehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEEE
Confidence 46677899999999999998643 2368999987643 3344679999999999999999999999754 5578999
Q ss_pred EecCCCCCHHHHHhcCCC
Q 004822 699 YEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~~ 716 (728)
|||+++|+|.++++....
T Consensus 106 ~e~~~~~~L~~~l~~~~~ 123 (298)
T 3f66_A 106 LPYMKHGDLRNFIRNETH 123 (298)
T ss_dssp EECCTTCBHHHHHHCTTC
T ss_pred EeCCCCCCHHHHHHhccc
Confidence 999999999999986543
No 314
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=99.04 E-value=3.6e-10 Score=116.59 Aligned_cols=92 Identities=24% Similarity=0.368 Sum_probs=80.3
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
++|...+.||+|+||.||+|... +++.||||++.... ....+.+.+|++++++++||||+++++++...+..++|||
T Consensus 22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 101 (287)
T 2wei_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGE 101 (287)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEEEE
Confidence 45888899999999999999965 68999999986432 2345679999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCC
Q 004822 701 FMSNGTLRDQLSGIF 715 (728)
Q Consensus 701 y~~~GsL~~~L~~~~ 715 (728)
|+++|+|.+++....
T Consensus 102 ~~~~~~L~~~l~~~~ 116 (287)
T 2wei_A 102 LYTGGELFDEIIKRK 116 (287)
T ss_dssp CCCSCBHHHHHHHHS
T ss_pred ccCCCCHHHHHHhcC
Confidence 999999999987643
No 315
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=99.04 E-value=2.6e-10 Score=117.22 Aligned_cols=92 Identities=25% Similarity=0.483 Sum_probs=76.6
Q ss_pred cCCcccCCceeccCceEEEEEEeCC----CCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
.++|...+.||+|+||.||+|...+ +..||||.+.... ....+.|.+|+.++++++||||+++++++.. +..++
T Consensus 11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~ 89 (281)
T 3cc6_A 11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTWI 89 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCEE
T ss_pred ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCEE
Confidence 4567788999999999999998543 2369999997643 3345679999999999999999999999864 55789
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
||||+++|+|.+++....
T Consensus 90 v~e~~~~~~L~~~l~~~~ 107 (281)
T 3cc6_A 90 IMELYPYGELGHYLERNK 107 (281)
T ss_dssp EEECCTTCBHHHHHHHHT
T ss_pred EEecCCCCCHHHHHHhcc
Confidence 999999999999997644
No 316
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=99.04 E-value=3.6e-10 Score=117.08 Aligned_cols=91 Identities=25% Similarity=0.360 Sum_probs=75.0
Q ss_pred cccCCceeccCceEEEEEEeCC-C---CEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeE-EEEE
Q 004822 626 FNSSTQIGQGGYGKVYKGILPD-G---TVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ-MLVY 699 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~~~-g---~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~-~lV~ 699 (728)
|...++||+|+||.||+|...+ + ..||+|.+..... ...+.|.+|++++++++|||||++++++...+.. ++||
T Consensus 23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~ 102 (298)
T 3pls_A 23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL 102 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence 4456889999999999998532 2 3799999975433 3456799999999999999999999999766554 9999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.+++.....
T Consensus 103 e~~~~~~L~~~~~~~~~ 119 (298)
T 3pls_A 103 PYMCHGDLLQFIRSPQR 119 (298)
T ss_dssp CCCTTCBHHHHHHCTTC
T ss_pred ecccCCCHHHHHhcccc
Confidence 99999999999987443
No 317
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=99.04 E-value=8.8e-11 Score=123.66 Aligned_cols=95 Identities=26% Similarity=0.452 Sum_probs=77.1
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhc-HHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG-EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~-~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
++|...+.||+|+||.||+|... +++.||||++....... ...+.+|++++++++|||||++++++...+..++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 45778899999999999999965 68999999997543221 12466899999999999999999999999999999999
Q ss_pred CCCCCHHHHHhcCCCccc
Q 004822 702 MSNGTLRDQLSGIFSVIR 719 (728)
Q Consensus 702 ~~~GsL~~~L~~~~~~~~ 719 (728)
++ |+|.+++.......+
T Consensus 82 ~~-~~l~~~~~~~~~~~~ 98 (324)
T 3mtl_A 82 LD-KDLKQYLDDCGNIIN 98 (324)
T ss_dssp CS-EEHHHHHHHTTTCCC
T ss_pred cc-cCHHHHHHhcCCCCC
Confidence 98 699999987544333
No 318
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=99.04 E-value=2.7e-10 Score=127.75 Aligned_cols=91 Identities=25% Similarity=0.469 Sum_probs=79.5
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
++|...++||+|+||.||+|... +|+.||||++..... ...+.+.+|+.++.+++|||||++++++...+..++||
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm 264 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM 264 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence 56777889999999999999975 589999999965321 23457899999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhcC
Q 004822 700 EFMSNGTLRDQLSGI 714 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~ 714 (728)
|||++|+|.+++...
T Consensus 265 E~~~gg~L~~~l~~~ 279 (543)
T 3c4z_A 265 TIMNGGDIRYHIYNV 279 (543)
T ss_dssp CCCTTCBHHHHHHTS
T ss_pred EeccCCCHHHHHHHh
Confidence 999999999999764
No 319
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=99.03 E-value=5.8e-11 Score=126.22 Aligned_cols=87 Identities=20% Similarity=0.370 Sum_probs=77.2
Q ss_pred cCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhc-----------------HHHHHHHHHHHhcCCCCcccce
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQG-----------------EKEFLTEIQFLSRLHHRNLVSL 685 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~-----------------~~~f~~E~~~l~~l~H~niv~l 685 (728)
.++|...+.||+|+||.||+|.. +|+.||||++....... .+.|.+|+.++.+++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 45788889999999999999998 89999999986432111 1689999999999999999999
Q ss_pred eEEEEeCCeEEEEEecCCCCCHHHH
Q 004822 686 VGYCDEEGEQMLVYEFMSNGTLRDQ 710 (728)
Q Consensus 686 ~g~~~~~~~~~lV~Ey~~~GsL~~~ 710 (728)
++++...+..++||||+++|+|.++
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~ 133 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKF 133 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHH
Confidence 9999999999999999999999998
No 320
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=99.03 E-value=2.8e-10 Score=120.49 Aligned_cols=88 Identities=25% Similarity=0.475 Sum_probs=76.7
Q ss_pred cCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhc--CCCCcccceeEEEEeCC----eEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSR--LHHRNLVSLVGYCDEEG----EQM 696 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~--l~H~niv~l~g~~~~~~----~~~ 696 (728)
.++|...+.||+|+||.||+|+. +|+.||||++... ..+++.+|++++.. ++||||+++++++...+ ..+
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~ 116 (342)
T 1b6c_B 41 ARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 116 (342)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEE
T ss_pred cccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeE
Confidence 35688889999999999999998 5899999999643 34578889999887 79999999999998765 789
Q ss_pred EEEecCCCCCHHHHHhcC
Q 004822 697 LVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~ 714 (728)
+||||+++|+|.+++...
T Consensus 117 lv~e~~~~g~L~~~l~~~ 134 (342)
T 1b6c_B 117 LVSDYHEHGSLFDYLNRY 134 (342)
T ss_dssp EEECCCTTCBHHHHHHHC
T ss_pred EEEeecCCCcHHHHHhcc
Confidence 999999999999999764
No 321
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=99.03 E-value=1.8e-10 Score=127.49 Aligned_cols=92 Identities=25% Similarity=0.385 Sum_probs=68.4
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeC-----CeE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GEQ 695 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~ 695 (728)
++|...+.||+|+||.||+|... +|+.||||++... .....+.+.+|++++++++|||||++++++... ...
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 132 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDEL 132 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCCE
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCceE
Confidence 56888999999999999999854 6899999998653 233446799999999999999999999999543 468
Q ss_pred EEEEecCCCCCHHHHHhcCCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
|+|||||+ |+|.+++.....
T Consensus 133 ~lv~e~~~-~~L~~~~~~~~~ 152 (458)
T 3rp9_A 133 YVVLEIAD-SDFKKLFRTPVY 152 (458)
T ss_dssp EEEECCCS-EEHHHHHHSSCC
T ss_pred EEEEeccc-cchhhhcccCCC
Confidence 99999985 799999987543
No 322
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=99.03 E-value=1.1e-10 Score=124.66 Aligned_cols=92 Identities=26% Similarity=0.357 Sum_probs=78.6
Q ss_pred CCcccCCceeccCceEEEEEEe----CCCCEEEEEEcccCCh----hcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL----PDGTVVAVKRAQEGSL----QGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGE 694 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~----~~g~~vAvK~l~~~~~----~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~ 694 (728)
.+|...+.||+|+||.||++.. .+|+.||||+++.... ...+.+.+|++++.++ +||||+++++++...+.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~ 133 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK 133 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence 5688889999999999999986 3689999999865321 2234677899999999 69999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhcCC
Q 004822 695 QMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.++||||+++|+|.+++....
T Consensus 134 ~~lv~e~~~~~~L~~~l~~~~ 154 (355)
T 1vzo_A 134 LHLILDYINGGELFTHLSQRE 154 (355)
T ss_dssp EEEEECCCCSCBHHHHHHHHS
T ss_pred EEEEeecCCCCCHHHHHHHcC
Confidence 999999999999999998654
No 323
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=99.03 E-value=4.1e-10 Score=118.59 Aligned_cols=92 Identities=33% Similarity=0.599 Sum_probs=76.3
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCE--EEEEEcccCC-hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTV--VAVKRAQEGS-LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~--vAvK~l~~~~-~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV 698 (728)
++|...+.||+|+||.||+|... +|.. ||||.+.... ....+.|.+|++++.++ +||||+++++++...+..++|
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv 104 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA 104 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence 45777899999999999999854 4554 4999987532 22345799999999999 999999999999999999999
Q ss_pred EecCCCCCHHHHHhcCC
Q 004822 699 YEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~~~ 715 (728)
|||+++|+|.+++....
T Consensus 105 ~e~~~~~~L~~~l~~~~ 121 (327)
T 1fvr_A 105 IEYAPHGNLLDFLRKSR 121 (327)
T ss_dssp ECCCTTCBHHHHHHTTC
T ss_pred EecCCCCCHHHHHHhcc
Confidence 99999999999998653
No 324
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=99.02 E-value=1.6e-10 Score=120.07 Aligned_cols=93 Identities=28% Similarity=0.380 Sum_probs=65.6
Q ss_pred hhcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 621 LATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 621 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
...++|...+.||+|+||.||+|.. .+++.||||++.... ....+++.+|+.++++++||||+++++++...+..++|
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLV 91 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEE
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEE
Confidence 3456788889999999999999985 468899999986543 22345789999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhc
Q 004822 699 YEFMSNGTLRDQLSG 713 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~ 713 (728)
|||+++|+|.+++..
T Consensus 92 ~e~~~~~~L~~~l~~ 106 (303)
T 2vwi_A 92 MKLLSGGSVLDIIKH 106 (303)
T ss_dssp EECCTTCBHHHHHHH
T ss_pred ehhccCCchHHHHHH
Confidence 999999999999974
No 325
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=99.02 E-value=3e-10 Score=119.47 Aligned_cols=100 Identities=28% Similarity=0.469 Sum_probs=83.7
Q ss_pred cchHHHHhhcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcC-CCCcccceeEEEEe
Q 004822 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDE 691 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~ 691 (728)
+++.++....+.|...+.||+|+||.||+|.. .+|+.||||++..... ..+++.+|+.++.++ +||||+++++++..
T Consensus 14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~ 92 (326)
T 2x7f_A 14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGAFIK 92 (326)
T ss_dssp --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSS-TTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCcc-cHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence 44455556678899999999999999999996 4689999999875432 345789999999999 89999999999976
Q ss_pred ------CCeEEEEEecCCCCCHHHHHhcC
Q 004822 692 ------EGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 692 ------~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.+..++||||+++|+|.+++...
T Consensus 93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 121 (326)
T 2x7f_A 93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNT 121 (326)
T ss_dssp CC--CCCCEEEEEEECCTTEEHHHHHHHS
T ss_pred ccCccccceEEEEEEcCCCCcHHHHHHhc
Confidence 46789999999999999999864
No 326
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=99.02 E-value=2.3e-10 Score=119.73 Aligned_cols=96 Identities=28% Similarity=0.476 Sum_probs=74.9
Q ss_pred HHHHhhcCCcccCCceeccCceEEEEEEeC----CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEE
Q 004822 617 GEMALATNNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCD 690 (728)
Q Consensus 617 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~ 690 (728)
+++....++|...+.||+|+||.||+|... .+..||||.++... ....+.|.+|+.++++++||||+++++++.
T Consensus 27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 106 (313)
T 3brb_A 27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI 106 (313)
T ss_dssp TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence 344455667888899999999999999854 24589999997542 233467999999999999999999999997
Q ss_pred eCC-----eEEEEEecCCCCCHHHHHh
Q 004822 691 EEG-----EQMLVYEFMSNGTLRDQLS 712 (728)
Q Consensus 691 ~~~-----~~~lV~Ey~~~GsL~~~L~ 712 (728)
..+ ..++||||+++|+|.+++.
T Consensus 107 ~~~~~~~~~~~~v~e~~~~~~L~~~l~ 133 (313)
T 3brb_A 107 EMSSQGIPKPMVILPFMKYGDLHTYLL 133 (313)
T ss_dssp C-------CEEEEEECCTTCBHHHHHH
T ss_pred eccccCCcccEEEEecccCCCHHHHHH
Confidence 654 3599999999999999995
No 327
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=99.01 E-value=5.1e-10 Score=119.53 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=86.3
Q ss_pred cccchHHHHhhcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-----CCcccce
Q 004822 612 RSFTYGEMALATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-----HRNLVSL 685 (728)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-----H~niv~l 685 (728)
..+++.+.....++|...+.||+|+||.||+|.. .+++.||||+++.. ....+.+..|++++..++ |||||++
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~ 101 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKY 101 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCE
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeecc
Confidence 4455666666678899999999999999999996 46889999999753 233457888999999986 9999999
Q ss_pred eEEEEeCCeEEEEEecCCCCCHHHHHhcCC
Q 004822 686 VGYCDEEGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 686 ~g~~~~~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++++...+..++||||+ +|+|.+++....
T Consensus 102 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~ 130 (360)
T 3llt_A 102 HGKFMYYDHMCLIFEPL-GPSLYEIITRNN 130 (360)
T ss_dssp EEEEEETTEEEEEECCC-CCBHHHHHHHTT
T ss_pred cceeeECCeeEEEEcCC-CCCHHHHHHhcC
Confidence 99999999999999999 899999998643
No 328
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=99.01 E-value=3.7e-10 Score=119.21 Aligned_cols=92 Identities=30% Similarity=0.444 Sum_probs=78.8
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
++|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|++++++++|||||++++++...+..++|||
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 104 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE 104 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence 45777889999999999999965 489999999865432 234568899999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcCC
Q 004822 701 FMSNGTLRDQLSGIF 715 (728)
Q Consensus 701 y~~~GsL~~~L~~~~ 715 (728)
|+++|+|.+++....
T Consensus 105 ~~~~~~l~~~~~~~~ 119 (331)
T 4aaa_A 105 FVDHTILDDLELFPN 119 (331)
T ss_dssp CCSEEHHHHHHHSTT
T ss_pred cCCcchHHHHHhhcc
Confidence 999999999876543
No 329
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=99.01 E-value=3.5e-10 Score=116.12 Aligned_cols=89 Identities=35% Similarity=0.552 Sum_probs=75.8
Q ss_pred cCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeC-CeEEEEEec
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-GEQMLVYEF 701 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-~~~~lV~Ey 701 (728)
.++|...+.||+|+||.||+|.. .|+.||||.++... ..+.|.+|++++++++||||+++++++... +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 35677889999999999999987 48899999997543 346799999999999999999999997654 468999999
Q ss_pred CCCCCHHHHHhcC
Q 004822 702 MSNGTLRDQLSGI 714 (728)
Q Consensus 702 ~~~GsL~~~L~~~ 714 (728)
+++|+|.+++...
T Consensus 97 ~~~~~L~~~l~~~ 109 (278)
T 1byg_A 97 MAKGSLVDYLRSR 109 (278)
T ss_dssp CTTEEHHHHHHHH
T ss_pred CCCCCHHHHHHhc
Confidence 9999999999754
No 330
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=99.01 E-value=2.9e-10 Score=119.93 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=76.6
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
.+|...+.||+|+||.||+|.. .+|+.||||.+..... .+++.+|+++++++ +|+||+++++++...+..++||||
T Consensus 9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~ 86 (330)
T 2izr_A 9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL 86 (330)
T ss_dssp TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence 5688889999999999999995 5689999999865432 23688999999999 999999999999999999999999
Q ss_pred CCCCCHHHHHhcC
Q 004822 702 MSNGTLRDQLSGI 714 (728)
Q Consensus 702 ~~~GsL~~~L~~~ 714 (728)
+ +|+|.+++...
T Consensus 87 ~-~~~L~~~~~~~ 98 (330)
T 2izr_A 87 L-GPSLEDLFDLC 98 (330)
T ss_dssp C-CCBHHHHHHHT
T ss_pred C-CCCHHHHHHHc
Confidence 9 99999999864
No 331
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=99.00 E-value=4.6e-10 Score=119.17 Aligned_cols=93 Identities=24% Similarity=0.312 Sum_probs=79.9
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCC--CcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHH--RNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lV~ 699 (728)
+.|...+.||+|+||.||++...+++.||||++.... ....+.|.+|++++.+++| +|||++++++...+..++||
T Consensus 9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 88 (343)
T 3dbq_A 9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 88 (343)
T ss_dssp CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence 4577889999999999999998889999999986532 3334679999999999987 99999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCCc
Q 004822 700 EFMSNGTLRDQLSGIFSV 717 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~~ 717 (728)
| +.+|+|.+++......
T Consensus 89 e-~~~~~L~~~l~~~~~~ 105 (343)
T 3dbq_A 89 E-CGNIDLNSWLKKKKSI 105 (343)
T ss_dssp C-CCSEEHHHHHHHSCCC
T ss_pred e-CCCCCHHHHHHhcCCC
Confidence 9 5688999999876443
No 332
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=99.00 E-value=2.7e-10 Score=121.06 Aligned_cols=93 Identities=24% Similarity=0.423 Sum_probs=73.8
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhc-----HHHHHHHHHHHhcCCCCcccceeEEEEeCCeEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQG-----EKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~-----~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 696 (728)
..+|...+.||+|+||.||+|... +|+.||||++....... .+.+.+|++++++++|||||++++++...+..+
T Consensus 9 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 88 (346)
T 1ua2_A 9 AKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNIS 88 (346)
T ss_dssp ----CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCE
T ss_pred hcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCceE
Confidence 456888899999999999999964 58999999997532211 236889999999999999999999999889999
Q ss_pred EEEecCCCCCHHHHHhcCCC
Q 004822 697 LVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+||||+++ +|.+++.....
T Consensus 89 lv~e~~~~-~l~~~~~~~~~ 107 (346)
T 1ua2_A 89 LVFDFMET-DLEVIIKDNSL 107 (346)
T ss_dssp EEEECCSE-EHHHHHTTCCS
T ss_pred EEEEcCCC-CHHHHHHhcCc
Confidence 99999996 89999987543
No 333
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=99.00 E-value=3.7e-10 Score=116.09 Aligned_cols=87 Identities=29% Similarity=0.482 Sum_probs=74.9
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEe-----------
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE----------- 691 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~----------- 691 (728)
.+|...+.||+|+||.||+|... +|+.||||++.... +.+.+|++++.+++||||+++++++..
T Consensus 11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~ 86 (284)
T 2a19_B 11 MDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSKN 86 (284)
T ss_dssp HHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-------
T ss_pred cccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccccc
Confidence 35778899999999999999975 68999999997643 357789999999999999999999854
Q ss_pred -----CCeEEEEEecCCCCCHHHHHhcC
Q 004822 692 -----EGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 692 -----~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
....++||||+++|+|.+++...
T Consensus 87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~ 114 (284)
T 2a19_B 87 SSRSKTKCLFIQMEFCDKGTLEQWIEKR 114 (284)
T ss_dssp --CCEEEEEEEEECCCCSCBHHHHHHHG
T ss_pred ccccCcceEEEEEeccCCCCHHHHHhhc
Confidence 34579999999999999999754
No 334
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=98.99 E-value=4.9e-10 Score=115.80 Aligned_cols=92 Identities=25% Similarity=0.404 Sum_probs=75.6
Q ss_pred hcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
..++|...+.||+|+||.||+|... ..||||+++... ....+.|.+|++++++++||||+++++++ ..+..++||
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~--~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESS--SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred CccceeeeeEecCCCCeEEEEEEEc--CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 3456888899999999999999864 359999987543 33346799999999999999999999976 456689999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||+++|+|.++++....
T Consensus 99 e~~~~~~L~~~l~~~~~ 115 (289)
T 3og7_A 99 QWCEGSSLYHHLHASET 115 (289)
T ss_dssp ECCCEEEHHHHHTTC--
T ss_pred EecCCCcHHHHHhhccC
Confidence 99999999999976543
No 335
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=98.99 E-value=9.1e-10 Score=114.15 Aligned_cols=90 Identities=32% Similarity=0.524 Sum_probs=75.7
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
++|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|++++++++||||+++++++...+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 46778899999999999999965 689999999965432 223578999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhcC
Q 004822 701 FMSNGTLRDQLSGI 714 (728)
Q Consensus 701 y~~~GsL~~~L~~~ 714 (728)
|++ |+|.+++...
T Consensus 83 ~~~-~~L~~~~~~~ 95 (299)
T 2r3i_A 83 FLH-QDLKKFMDAS 95 (299)
T ss_dssp CCS-EEHHHHHHHT
T ss_pred ccc-CCHHHHHHhh
Confidence 998 6999999764
No 336
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=98.98 E-value=1.5e-10 Score=122.47 Aligned_cols=94 Identities=21% Similarity=0.337 Sum_probs=79.5
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChh--------cHHHHHHHHHHHhcCCCCcccceeEEEEeCC
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ--------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG 693 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~--------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~ 693 (728)
.++|...+.||+|+||.||+|.. .+++.||||++...... ..+.+.+|++++++++|||||++++++...+
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~~ 102 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQG 102 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECSS
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeCC
Confidence 34688889999999999999984 46889999999754321 2235788999999999999999999999999
Q ss_pred eEEEEEecCCCC-CHHHHHhcCCC
Q 004822 694 EQMLVYEFMSNG-TLRDQLSGIFS 716 (728)
Q Consensus 694 ~~~lV~Ey~~~G-sL~~~L~~~~~ 716 (728)
..++||||+..| +|.+++.....
T Consensus 103 ~~~lv~e~~~~g~~l~~~~~~~~~ 126 (335)
T 3dls_A 103 FFQLVMEKHGSGLDLFAFIDRHPR 126 (335)
T ss_dssp EEEEEEECCTTSCBHHHHHHTCCC
T ss_pred EEEEEEEeCCCCccHHHHHHhcCC
Confidence 999999999888 99999987643
No 337
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=98.98 E-value=8.1e-10 Score=119.45 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=79.1
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCC--CCcccceeEEEEeCCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLH--HRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~~~~~lV~ 699 (728)
..|...+.||+|+||.||+|...+++.||||++... .....+.|.+|+.++.+++ |+|||++++++...+..++||
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~ 135 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM 135 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence 348888999999999999999878999999998653 2334567999999999996 599999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
| +.+|+|.+++.....
T Consensus 136 E-~~~~~L~~~l~~~~~ 151 (390)
T 2zmd_A 136 E-CGNIDLNSWLKKKKS 151 (390)
T ss_dssp E-CCSEEHHHHHHHCSS
T ss_pred e-cCCCCHHHHHHhcCC
Confidence 9 578899999987643
No 338
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=98.97 E-value=6.6e-10 Score=115.98 Aligned_cols=93 Identities=26% Similarity=0.375 Sum_probs=76.5
Q ss_pred cCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEEe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~E 700 (728)
.++|...+.||+|+||.||+|... ..+|||.++... ....+.|.+|++++++++|||||++++++. .+..++|||
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~e 111 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEEE
T ss_pred ccceEEEeEecCCCCeEEEEEEEC--CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEEe
Confidence 456778899999999999999864 468999887532 233467999999999999999999999875 556899999
Q ss_pred cCCCCCHHHHHhcCCCcc
Q 004822 701 FMSNGTLRDQLSGIFSVI 718 (728)
Q Consensus 701 y~~~GsL~~~L~~~~~~~ 718 (728)
|+++|+|.++++......
T Consensus 112 ~~~~~~L~~~l~~~~~~~ 129 (307)
T 3lb7_A 112 WCEGSSLYKHLHVQETKF 129 (307)
T ss_dssp CCSSCBHHHHHHTSCCCC
T ss_pred cCCCCcHHHHHHhcccCC
Confidence 999999999998554433
No 339
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=98.97 E-value=2.8e-11 Score=128.21 Aligned_cols=89 Identities=25% Similarity=0.363 Sum_probs=71.4
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCC--------hhcHHHHHHHHHHHhcCC---------CCccccee
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--------LQGEKEFLTEIQFLSRLH---------HRNLVSLV 686 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--------~~~~~~f~~E~~~l~~l~---------H~niv~l~ 686 (728)
++|...+.||+|+||.||+|+. +|+.||||++.... ....+.+.+|+.++++++ |||||++.
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~ 98 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN 98 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred ccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence 4577789999999999999987 68999999997542 122367899999998886 88888888
Q ss_pred EEEE------------------------------eCCeEEEEEecCCCCCHHHHHhc
Q 004822 687 GYCD------------------------------EEGEQMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 687 g~~~------------------------------~~~~~~lV~Ey~~~GsL~~~L~~ 713 (728)
+++. ..+..++|||||++|++.+.+.+
T Consensus 99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~ 155 (336)
T 2vuw_A 99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT 155 (336)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT
T ss_pred ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh
Confidence 7653 16789999999999977666654
No 340
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.97 E-value=1e-08 Score=110.95 Aligned_cols=261 Identities=11% Similarity=0.057 Sum_probs=164.1
Q ss_pred CCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCC----------------------ccccCCCCCcEEec
Q 004822 80 GYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIP----------------------KEIGNIKSLELLLL 137 (728)
Q Consensus 80 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----------------------~~~~~l~~L~~L~L 137 (728)
.+.+|+.+++..+ ++......|.++.+|+.+.+..+ +..... .+|.++++|+.+.+
T Consensus 92 ~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l 169 (394)
T 4fs7_A 92 NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSL 169 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcccCCCcEEec
Confidence 4567888988653 55455567777888877766543 222222 34555555666655
Q ss_pred cCCcCCCcCCccCCCCCCCCEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCC
Q 004822 138 NGNELTGSLPEELGYLPKLDRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGY 217 (728)
Q Consensus 138 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 217 (728)
..+. .......|.++.+|+.+.+..| ++.+....|.++..|+.+.+..+... +........+|+.+.+..+ ++..
T Consensus 170 ~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i 244 (394)
T 4fs7_A 170 PDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTEL 244 (394)
T ss_dssp CTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEE
T ss_pred CCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceec
Confidence 4432 2234445555566666655544 33344455555556655555544322 2223333456666665433 2333
Q ss_pred CCcCCCCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc-
Q 004822 218 LPPELSELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS- 296 (728)
Q Consensus 218 ~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~- 296 (728)
....+..+..|+.+.+..+... .....|..+..++.+....+.+. ...+..+.+|+.+.+.++ ++ .|+...+.
T Consensus 245 ~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~ 318 (394)
T 4fs7_A 245 GKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VK-FIGEEAFES 318 (394)
T ss_dssp CSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CC-EECTTTTTT
T ss_pred ccccccccccceeEEcCCCcce--eeccccccccccceeccCceeec--cccccccccccccccccc-cc-eechhhhcC
Confidence 4456777888999998877553 34556788888988888766432 125778889999998765 55 56666555
Q ss_pred -CCccEEEccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCC
Q 004822 297 -LNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNN 360 (728)
Q Consensus 297 -~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N 360 (728)
.+|+.+++.++ ++.....+|.++.+|+.+++..| ++..-...|. ++.+|+.+++..+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ-----GCINLKKVELPKR 376 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT-----TCTTCCEEEEEGG
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh-----CCCCCCEEEECCC
Confidence 68999999755 66666778999999999999877 6633344555 7788999998754
No 341
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=2.9e-10 Score=132.26 Aligned_cols=90 Identities=19% Similarity=0.397 Sum_probs=74.4
Q ss_pred CCcccCCceeccCceEEEEEEeC--CCCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe-----E
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP--DGTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE-----Q 695 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~--~g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-----~ 695 (728)
++|...+.||+|+||.||+|... +|+.||||++.... ....+.|.+|++++++++|||||++++++...+. .
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 56888899999999999999864 58899999986533 3344579999999999999999999999987655 7
Q ss_pred EEEEecCCCCCHHHHHhc
Q 004822 696 MLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~ 713 (728)
|+|||||++|+|.+++..
T Consensus 160 ~lv~E~~~g~~L~~~~~~ 177 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ 177 (681)
T ss_dssp EEEEECCCCEECC----C
T ss_pred EEEEEeCCCCcHHHHHhC
Confidence 999999999999998765
No 342
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=98.97 E-value=2.9e-10 Score=119.69 Aligned_cols=91 Identities=24% Similarity=0.427 Sum_probs=73.9
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCC----EEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGT----VVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~l 697 (728)
++|...+.||+|+||.||+|... +++ .||+|.+.... ....+.+.+|+.++++++|||||+++++|. .+..++
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~ 91 (325)
T 3kex_A 13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQL 91 (325)
T ss_dssp TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEEE
T ss_pred hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccEE
Confidence 45777889999999999999853 344 38888875432 222346789999999999999999999985 567899
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
||||+++|+|.+++....
T Consensus 92 v~e~~~~~~L~~~l~~~~ 109 (325)
T 3kex_A 92 VTQYLPLGSLLDHVRQHR 109 (325)
T ss_dssp EEECCTTCBSHHHHHSSG
T ss_pred EEEeCCCCCHHHHHHHcc
Confidence 999999999999998753
No 343
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=98.96 E-value=3.6e-10 Score=121.17 Aligned_cols=91 Identities=23% Similarity=0.369 Sum_probs=70.5
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC------
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG------ 693 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------ 693 (728)
...|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|++++++++|||||++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 45688889999999999999986 46899999999653 2233457899999999999999999999997653
Q ss_pred eEEEEEecCCCCCHHHHHhcC
Q 004822 694 EQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 694 ~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
..++||||| +++|.+++...
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~ 123 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHE 123 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHC
T ss_pred eEEEEEecC-CCCHHHHHhcC
Confidence 459999999 78999999763
No 344
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.96 E-value=6.7e-10 Score=128.09 Aligned_cols=94 Identities=24% Similarity=0.397 Sum_probs=78.1
Q ss_pred hhcCCcccCCceeccCceEEEEEEeCC----CCEEEEEEcccCC-hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeE
Q 004822 621 LATNNFNSSTQIGQGGYGKVYKGILPD----GTVVAVKRAQEGS-LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ 695 (728)
Q Consensus 621 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~----g~~vAvK~l~~~~-~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~ 695 (728)
...++|...+.||+|+||.||+|.... +..||||+++... ....+.|.+|+.++++++|||||+++|++. ++..
T Consensus 387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~ 465 (656)
T 2j0j_A 387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV 465 (656)
T ss_dssp CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence 344567778899999999999998642 4579999987543 233467999999999999999999999984 5678
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+++|+|.++++.+.
T Consensus 466 ~lv~E~~~~g~L~~~l~~~~ 485 (656)
T 2j0j_A 466 WIIMELCTLGELRSFLQVRK 485 (656)
T ss_dssp EEEEECCTTCBHHHHHHHTT
T ss_pred EEEEEcCCCCcHHHHHHhcc
Confidence 99999999999999998654
No 345
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=98.96 E-value=6.3e-10 Score=120.25 Aligned_cols=91 Identities=27% Similarity=0.509 Sum_probs=69.2
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCC-CCcccceeEEEEeCC--eEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEG--EQM 696 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~--~~~ 696 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.++.+++ |||||++++++...+ ..+
T Consensus 8 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~~ 87 (388)
T 3oz6_A 8 LRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDVY 87 (388)
T ss_dssp HTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCEE
T ss_pred cCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEEE
Confidence 45788889999999999999985 46899999998643 2333457889999999997 999999999997654 689
Q ss_pred EEEecCCCCCHHHHHhcC
Q 004822 697 LVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~ 714 (728)
+|||||+ |+|.++++..
T Consensus 88 lv~e~~~-~~L~~~~~~~ 104 (388)
T 3oz6_A 88 LVFDYME-TDLHAVIRAN 104 (388)
T ss_dssp EEEECCS-EEHHHHHHHT
T ss_pred EEecccC-cCHHHHHHcC
Confidence 9999998 6999999864
No 346
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=98.95 E-value=4.6e-10 Score=124.18 Aligned_cols=91 Identities=21% Similarity=0.292 Sum_probs=74.7
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeC------C
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------G 693 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~ 693 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+.+++.++|||||++++++... .
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 46788889999999999999984 45889999999753 233356789999999999999999999999654 3
Q ss_pred eEEEEEecCCCCCHHHHHhcC
Q 004822 694 EQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 694 ~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
..++|||||++ +|.+.+...
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~~ 160 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQME 160 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTSC
T ss_pred eEEEEEeCCCC-CHHHHHhhc
Confidence 57999999986 577777643
No 347
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.95 E-value=3.3e-10 Score=116.94 Aligned_cols=90 Identities=28% Similarity=0.441 Sum_probs=68.4
Q ss_pred CCcccCCceeccCceEEEEEEeC--CCC--EEEEEEcccCC---hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP--DGT--VVAVKRAQEGS---LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~--~g~--~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 696 (728)
++|...+.||+|+||.||+|.+. +++ .||||+++... ....++|.+|++++.+++||||+++++++...+ .+
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~~ 96 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-MK 96 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-CE
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-ce
Confidence 45778899999999999999853 233 68999987542 233467999999999999999999999997654 88
Q ss_pred EEEecCCCCCHHHHHhcC
Q 004822 697 LVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~ 714 (728)
+||||+++|+|.+++...
T Consensus 97 ~v~e~~~~~~L~~~l~~~ 114 (291)
T 1u46_A 97 MVTELAPLGSLLDRLRKH 114 (291)
T ss_dssp EEEECCTTCBHHHHHHHH
T ss_pred eeEecccCCCHHHHHHhc
Confidence 999999999999999864
No 348
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=98.95 E-value=1.4e-09 Score=114.84 Aligned_cols=89 Identities=33% Similarity=0.462 Sum_probs=70.5
Q ss_pred cCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHH--HhcCCCCcccceeEEEEe-----CCeE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQF--LSRLHHRNLVSLVGYCDE-----EGEQ 695 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~--l~~l~H~niv~l~g~~~~-----~~~~ 695 (728)
.++|...+.||+|+||.||+|.. +++.||||++.... ..++..|.++ +..++|+||+++++++.. ....
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 87 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEY 87 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred hHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCceE
Confidence 35678889999999999999987 68999999996532 3345555555 445899999999987643 2256
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+++|+|.+++....
T Consensus 88 ~lv~e~~~~g~L~~~l~~~~ 107 (336)
T 3g2f_A 88 LLVMEYYPNGSLXKYLSLHT 107 (336)
T ss_dssp EEEECCCTTCBHHHHHHHCC
T ss_pred EEEEecCCCCcHHHHHhhcc
Confidence 89999999999999997654
No 349
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=98.94 E-value=9.4e-10 Score=118.09 Aligned_cols=91 Identities=19% Similarity=0.277 Sum_probs=75.8
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCC------
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEG------ 693 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~------ 693 (728)
.++|...+.||+|+||.||+|.. .+++.||||++... .....+.+.+|+.+++.++|||||++++++...+
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 35788889999999999999985 45889999999653 2233467899999999999999999999997654
Q ss_pred eEEEEEecCCCCCHHHHHhcC
Q 004822 694 EQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 694 ~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
..++||||++ |+|.+++...
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~~ 123 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQME 123 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHSC
T ss_pred ceEEEEEcCC-CCHHHHHhhc
Confidence 6899999998 5798888643
No 350
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=98.94 E-value=1.9e-09 Score=113.54 Aligned_cols=87 Identities=22% Similarity=0.426 Sum_probs=76.3
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-CCcccceeEEEEe--CCeEEEEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDE--EGEQMLVY 699 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~--~~~~~lV~ 699 (728)
++|...+.||+|+||.||+|.. .+++.||||+++.. ..+.+.+|++++.+++ ||||+++++++.. ....++||
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~ 112 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF 112 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEeccc---chHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence 4577889999999999999984 56899999999754 3467999999999997 9999999999987 56789999
Q ss_pred ecCCCCCHHHHHhc
Q 004822 700 EFMSNGTLRDQLSG 713 (728)
Q Consensus 700 Ey~~~GsL~~~L~~ 713 (728)
||+++|+|.+++..
T Consensus 113 e~~~~~~l~~~~~~ 126 (330)
T 3nsz_A 113 EHVNNTDFKQLYQT 126 (330)
T ss_dssp ECCCCCCHHHHGGG
T ss_pred eccCchhHHHHHHh
Confidence 99999999999864
No 351
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=98.94 E-value=1.4e-09 Score=115.10 Aligned_cols=91 Identities=24% Similarity=0.413 Sum_probs=75.1
Q ss_pred hcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC-hhcHHHHHHHHHH-HhcCCCCcccceeEEEEeCCeEEEE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-LQGEKEFLTEIQF-LSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-~~~~~~f~~E~~~-l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
...+|...+.||+|+||.||+|.. .+|+.||||+++... ....+++..|..+ ++.++|||||++++++...+..++|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 345677888999999999999985 568999999997542 2334456666665 7888999999999999999999999
Q ss_pred EecCCCCCHHHHHhc
Q 004822 699 YEFMSNGTLRDQLSG 713 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~ 713 (728)
|||+++ +|.+++..
T Consensus 129 ~e~~~~-~L~~~l~~ 142 (340)
T 3an0_A 129 MELMDT-SLDKFYKQ 142 (340)
T ss_dssp ECCCSE-EHHHHHHH
T ss_pred HHHhhC-cHHHHHHH
Confidence 999985 99999874
No 352
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=98.93 E-value=9.5e-10 Score=117.02 Aligned_cols=91 Identities=23% Similarity=0.404 Sum_probs=77.0
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeC-----CeE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GEQ 695 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~~ 695 (728)
.++|...+.||+|+||.||+|... +|+.||||++..... ....++.+|++++++++||||+++++++... ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 457888899999999999999964 588999999975432 3345789999999999999999999998654 678
Q ss_pred EEEEecCCCCCHHHHHhcC
Q 004822 696 MLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~ 714 (728)
++||||++ |+|.+++...
T Consensus 90 ~lv~e~~~-~~L~~~~~~~ 107 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQ 107 (353)
T ss_dssp EEEECCCS-EEHHHHHHHC
T ss_pred EEEEeccC-ccHHHHHhhc
Confidence 99999998 6999998764
No 353
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=98.93 E-value=1.3e-09 Score=114.90 Aligned_cols=93 Identities=28% Similarity=0.495 Sum_probs=76.4
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCC----EEEEEEcccC-ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGT----VVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~----~vAvK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~ 696 (728)
..+|...+.||+|+||.||+|... +++ .||+|.+... .....++|.+|+.++++++|||||+++++|... ..+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-~~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESS-SEE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecC-Cce
Confidence 356888899999999999999853 344 3688887543 333467899999999999999999999999865 488
Q ss_pred EEEecCCCCCHHHHHhcCCC
Q 004822 697 LVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+|+||+++|+|.+++.....
T Consensus 93 ~v~~~~~~g~L~~~l~~~~~ 112 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVREHKD 112 (327)
T ss_dssp EEECCCSSCBHHHHHHHTTT
T ss_pred EEEEecCCCcHHHHHHhcCC
Confidence 99999999999999987543
No 354
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=98.92 E-value=6.1e-10 Score=116.44 Aligned_cols=102 Identities=23% Similarity=0.303 Sum_probs=83.7
Q ss_pred cchHHHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCC--CCcccceeEEE
Q 004822 614 FTYGEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLH--HRNLVSLVGYC 689 (728)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~--H~niv~l~g~~ 689 (728)
+.++.+....+.|...+.||+|+||.||++...+++.||||.+.... ....+.|.+|++++.+++ |+||+++++++
T Consensus 18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~ 97 (313)
T 3cek_A 18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE 97 (313)
T ss_dssp --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence 33444444556788889999999999999998889999999986532 334467999999999997 59999999999
Q ss_pred EeCCeEEEEEecCCCCCHHHHHhcCCC
Q 004822 690 DEEGEQMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 690 ~~~~~~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
...+..++||| +.+|+|.+++.....
T Consensus 98 ~~~~~~~lv~e-~~~~~L~~~l~~~~~ 123 (313)
T 3cek_A 98 ITDQYIYMVME-CGNIDLNSWLKKKKS 123 (313)
T ss_dssp ECSSEEEEEEC-CCSEEHHHHHHHCSS
T ss_pred ecCCEEEEEEe-cCCCcHHHHHHhcCC
Confidence 99999999999 678899999987543
No 355
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=98.92 E-value=1.6e-10 Score=121.03 Aligned_cols=97 Identities=21% Similarity=0.310 Sum_probs=81.5
Q ss_pred HHHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe
Q 004822 617 GEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE 694 (728)
Q Consensus 617 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~ 694 (728)
.+.....++|...+.||+|+||.||+|...+ .||||.++.... ...+.|.+|+.++++++|+||+++++++...+.
T Consensus 26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~ 103 (319)
T 2y4i_B 26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH 103 (319)
T ss_dssp GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC
T ss_pred ccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc
Confidence 4444556788899999999999999998743 499999875322 223468899999999999999999999999999
Q ss_pred EEEEEecCCCCCHHHHHhcCC
Q 004822 695 QMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
.++||||+++|+|.+++....
T Consensus 104 ~~iv~e~~~~~~L~~~l~~~~ 124 (319)
T 2y4i_B 104 LAIITSLCKGRTLYSVVRDAK 124 (319)
T ss_dssp EEEECBCCCSEEHHHHTTSSC
T ss_pred eEEEeecccCCcHHHHHHhcC
Confidence 999999999999999998754
No 356
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=98.92 E-value=1.2e-09 Score=116.27 Aligned_cols=92 Identities=30% Similarity=0.517 Sum_probs=75.5
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh--hcHHHHHHHHHHHhcCCCCcccceeEEEEe--------C
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--------E 692 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--------~ 692 (728)
++|...+.||+|+||.||+|.. .+|+.||||++..... .....+.+|++++++++|||||++++++.. .
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 96 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRCK 96 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC--------
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccCC
Confidence 4678889999999999999996 5689999999865432 224578899999999999999999999976 3
Q ss_pred CeEEEEEecCCCCCHHHHHhcCCC
Q 004822 693 GEQMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 693 ~~~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+..++||||+++ +|.+.+.....
T Consensus 97 ~~~~lv~e~~~~-~l~~~l~~~~~ 119 (351)
T 3mi9_A 97 GSIYLVFDFCEH-DLAGLLSNVLV 119 (351)
T ss_dssp CEEEEEEECCSE-EHHHHHHCTTS
T ss_pred ceEEEEEeccCC-CHHHHHhhccC
Confidence 468999999985 88888876533
No 357
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=98.92 E-value=1.3e-09 Score=116.77 Aligned_cols=92 Identities=22% Similarity=0.305 Sum_probs=77.0
Q ss_pred hcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh-hcHHHHHHHHHHHhcCCCCcccceeEEEEeC-----Ce
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-QGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE-----GE 694 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~-----~~ 694 (728)
....|...+.||+|+||.||+|... +++.||||++..... ...+.+.+|++++.+++|||||++++++... ..
T Consensus 25 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 104 (364)
T 3qyz_A 25 VGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD 104 (364)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred ccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccce
Confidence 3457888899999999999999854 588999999975432 3346799999999999999999999999654 36
Q ss_pred EEEEEecCCCCCHHHHHhcC
Q 004822 695 QMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.++||||++ |+|.+++...
T Consensus 105 ~~iv~e~~~-~~L~~~l~~~ 123 (364)
T 3qyz_A 105 VYIVQDLME-TDLYKLLKTQ 123 (364)
T ss_dssp EEEEEECCS-EEHHHHHHHC
T ss_pred EEEEEcccC-cCHHHHHHhC
Confidence 899999998 5999999764
No 358
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=98.92 E-value=7.4e-10 Score=128.17 Aligned_cols=96 Identities=19% Similarity=0.215 Sum_probs=80.3
Q ss_pred hcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~ 696 (728)
...+|...++||+|+||.||+|... +++.||||+++... ....+.+..|..++..+ +|++|+++++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 3467888899999999999999964 58899999997531 12235688999999988 7999999999999999999
Q ss_pred EEEecCCCCCHHHHHhcCCCc
Q 004822 697 LVYEFMSNGTLRDQLSGIFSV 717 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~~~ 717 (728)
+|||||++|+|.++++.....
T Consensus 419 lV~E~~~gg~L~~~l~~~~~~ 439 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQQVGRF 439 (674)
T ss_dssp EEEECCCSCBHHHHHHHHSSC
T ss_pred EEEeCcCCCcHHHHHHhcCCC
Confidence 999999999999999875433
No 359
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=98.91 E-value=1.5e-09 Score=117.10 Aligned_cols=88 Identities=20% Similarity=0.353 Sum_probs=70.0
Q ss_pred hhcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeC-------
Q 004822 621 LATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------- 692 (728)
Q Consensus 621 ~~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------- 692 (728)
....+|...+.||+|+||.||+|.. .+|+.||||++..... ...+|+++++.++|||||++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 3456788899999999999999985 5689999999865432 234799999999999999999998543
Q ss_pred -------------------------------CeEEEEEecCCCCCHHHHHhc
Q 004822 693 -------------------------------GEQMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 693 -------------------------------~~~~lV~Ey~~~GsL~~~L~~ 713 (728)
...++|||||+ |+|.+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~ 130 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKS 130 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHH
Confidence 34889999999 588887763
No 360
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=98.91 E-value=1.8e-09 Score=112.29 Aligned_cols=89 Identities=29% Similarity=0.438 Sum_probs=73.2
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC----hhcHHHHHHHHHHHhcCCCCcccceeEEEE--eCCeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS----LQGEKEFLTEIQFLSRLHHRNLVSLVGYCD--EEGEQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~----~~~~~~f~~E~~~l~~l~H~niv~l~g~~~--~~~~~~ 696 (728)
++|...+.||+|+||.||++.. .+++.||||.++... ....+.|.+|++++++++||||+++++++. ..+..+
T Consensus 5 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~ 84 (305)
T 2wtk_C 5 GKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKMY 84 (305)
T ss_dssp CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CEE
T ss_pred cceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeEE
Confidence 5788899999999999999996 458899999996532 123467999999999999999999999985 345789
Q ss_pred EEEecCCCCCHHHHHhc
Q 004822 697 LVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~ 713 (728)
+||||+++| |.+++..
T Consensus 85 lv~e~~~~~-l~~~~~~ 100 (305)
T 2wtk_C 85 MVMEYCVCG-MQEMLDS 100 (305)
T ss_dssp EEEECCSEE-HHHHHHH
T ss_pred EEehhccCC-HHHHHHh
Confidence 999999987 7777764
No 361
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=98.91 E-value=2.2e-09 Score=111.17 Aligned_cols=90 Identities=19% Similarity=0.276 Sum_probs=77.9
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEEec
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYEF 701 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~Ey 701 (728)
++|...+.||+|+||.||+|.. .+|+.||||++..... .+++.+|++++.++ +|+|++++++++......++||||
T Consensus 10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~ 87 (298)
T 1csn_A 10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL 87 (298)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCCc--cHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEe
Confidence 5688889999999999999994 5689999999865432 23588999999999 899999999999999999999999
Q ss_pred CCCCCHHHHHhcCCC
Q 004822 702 MSNGTLRDQLSGIFS 716 (728)
Q Consensus 702 ~~~GsL~~~L~~~~~ 716 (728)
+ +|+|.+++.....
T Consensus 88 ~-~~~L~~~l~~~~~ 101 (298)
T 1csn_A 88 L-GPSLEDLLDLCGR 101 (298)
T ss_dssp C-CCBHHHHHHHTTT
T ss_pred c-CCCHHHHHHHhcc
Confidence 9 9999999986543
No 362
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.91 E-value=5.3e-08 Score=105.26 Aligned_cols=147 Identities=12% Similarity=0.074 Sum_probs=87.3
Q ss_pred eeEEECCCCCCccccCccccCCCCCCEEEccCCC---CccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 004822 84 LRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNK---ISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQ 160 (728)
Q Consensus 84 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~---l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 160 (728)
|+.+.+.. .++..-..+|.++++|+.+.+..|. ++.+-..+|.++.+|+.+.+..+ ++......|..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 66666653 3554555667777778887776653 55445566777777777766544 4445556677777777777
Q ss_pred eeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccc
Q 004822 161 IDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNN 236 (728)
Q Consensus 161 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 236 (728)
+..+ +..+....|.++.+|+.+.+..+ +...-...|. ...|+.+.+..+-. ......|..+.+++......+
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~ 215 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSE 215 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCS
T ss_pred ccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCccc-ccccchhhhccccceeccccc
Confidence 7543 34455566777777777777654 3323333443 35566666654422 233445555666665554443
No 363
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=98.90 E-value=5.7e-10 Score=120.08 Aligned_cols=91 Identities=12% Similarity=0.145 Sum_probs=72.8
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC---ChhcHHHHHHHH---HHHhcCCCCccccee-------EE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG---SLQGEKEFLTEI---QFLSRLHHRNLVSLV-------GY 688 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~---~~~~~~~f~~E~---~~l~~l~H~niv~l~-------g~ 688 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.|.+|+ +.+++++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 45677889999999999999995 56899999999743 223456799999 556667899999998 66
Q ss_pred EEeCC-----------------eEEEEEecCCCCCHHHHHhcC
Q 004822 689 CDEEG-----------------EQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 689 ~~~~~-----------------~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
+...+ ..++||||+ +|+|.+++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~ 193 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVL 193 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHH
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhc
Confidence 65543 278999999 68999999853
No 364
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=98.90 E-value=2.2e-09 Score=116.37 Aligned_cols=86 Identities=17% Similarity=0.219 Sum_probs=70.1
Q ss_pred CcccC-CceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHh-cCCCCcccceeEEEEe----CCeEEE
Q 004822 625 NFNSS-TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLS-RLHHRNLVSLVGYCDE----EGEQML 697 (728)
Q Consensus 625 ~~~~~-~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~----~~~~~l 697 (728)
+|... ++||+|+||.||+|... +|+.||||+++.. ..+.+|++++. ..+|||||++++++.. .+..++
T Consensus 62 ~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~l 136 (400)
T 1nxk_A 62 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI 136 (400)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred cceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEEE
Confidence 34443 68999999999999864 5889999999642 35678888874 4589999999999865 456899
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
|||||++|+|.++++...
T Consensus 137 v~E~~~gg~L~~~l~~~~ 154 (400)
T 1nxk_A 137 VMECLDGGELFSRIQDRG 154 (400)
T ss_dssp EEECCCSEEHHHHHHCC-
T ss_pred EEEeCCCCcHHHHHHHhC
Confidence 999999999999998753
No 365
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=98.90 E-value=1.1e-09 Score=117.57 Aligned_cols=91 Identities=25% Similarity=0.377 Sum_probs=76.2
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCeE----
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQ---- 695 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~---- 695 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ....+.+.+|+.++++++|||||++++++...+..
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 45788889999999999999985 458999999997542 22346789999999999999999999999876654
Q ss_pred --EEEEecCCCCCHHHHHhcC
Q 004822 696 --MLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 696 --~lV~Ey~~~GsL~~~L~~~ 714 (728)
++||||++ |+|.+++...
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~~ 140 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGME 140 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTSC
T ss_pred eEEEEEcccc-ccHHHHhhcC
Confidence 99999998 6999888643
No 366
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=98.90 E-value=2.2e-09 Score=110.67 Aligned_cols=90 Identities=23% Similarity=0.326 Sum_probs=71.7
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCCh-hcHH-HHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSL-QGEK-EFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~-~~~~-~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.++|...+.||+|+||.||+|.. .+|+.||||+++.... .... .+.++...++.++||||+++++++...+..++||
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~ 85 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM 85 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence 45678889999999999999995 4689999999975432 2223 3455555688899999999999999999999999
Q ss_pred ecCCCCCHHHHHhc
Q 004822 700 EFMSNGTLRDQLSG 713 (728)
Q Consensus 700 Ey~~~GsL~~~L~~ 713 (728)
||++ |+|.+++..
T Consensus 86 e~~~-~~l~~~l~~ 98 (290)
T 3fme_A 86 ELMD-TSLDKFYKQ 98 (290)
T ss_dssp ECCS-EEHHHHHHH
T ss_pred ehhc-cchHHHHHH
Confidence 9998 589888764
No 367
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=98.90 E-value=3.1e-09 Score=110.35 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=72.0
Q ss_pred CcccC-CceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHH-hcCCCCcccceeEEEEe----CCeEEE
Q 004822 625 NFNSS-TQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFL-SRLHHRNLVSLVGYCDE----EGEQML 697 (728)
Q Consensus 625 ~~~~~-~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l-~~l~H~niv~l~g~~~~----~~~~~l 697 (728)
+|... ++||+|+||.||+|.. .+++.||||+++.. ..+.+|++++ +..+||||+++++++.. ....++
T Consensus 18 ~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~l 92 (299)
T 3m2w_A 18 DYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLI 92 (299)
T ss_dssp TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEEE
T ss_pred chhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEEE
Confidence 45444 7799999999999985 46899999999642 3577888887 56699999999999976 667899
Q ss_pred EEecCCCCCHHHHHhcCC
Q 004822 698 VYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~~~~ 715 (728)
||||+++|+|.+++....
T Consensus 93 v~e~~~~~~L~~~l~~~~ 110 (299)
T 3m2w_A 93 VMECLDGGELFSRIQDRG 110 (299)
T ss_dssp EECCCCSCBHHHHHHHCT
T ss_pred EEeecCCCcHHHHHHhcc
Confidence 999999999999998653
No 368
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.90 E-value=1.5e-09 Score=114.42 Aligned_cols=90 Identities=22% Similarity=0.381 Sum_probs=76.4
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-CCcccceeEEEEe--------C
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDE--------E 692 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~--------~ 692 (728)
..+|...++||+|+||.||+|.. .+|+.||||++........+.+.+|+.++.+++ |||||++++++.. .
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 34678889999999999999995 468999999997666556678999999999996 9999999999953 3
Q ss_pred CeEEEEEecCCCCCHHHHHhc
Q 004822 693 GEQMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 693 ~~~~lV~Ey~~~GsL~~~L~~ 713 (728)
...++||||++ |+|.+++..
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~ 126 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKK 126 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHH
T ss_pred ceEEEEEEecC-CCHHHHHHH
Confidence 34799999996 799999875
No 369
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=98.89 E-value=4.7e-10 Score=117.24 Aligned_cols=94 Identities=21% Similarity=0.347 Sum_probs=71.8
Q ss_pred hcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChh------cHHHHHHHHHHHhcC----CCCcccceeEEEE
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRL----HHRNLVSLVGYCD 690 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~------~~~~f~~E~~~l~~l----~H~niv~l~g~~~ 690 (728)
..++|...+.||+|+||.||+|.. .+++.||||+++..... ....+.+|+.++.++ +|+||+++++++.
T Consensus 29 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~ 108 (312)
T 2iwi_A 29 FEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFE 108 (312)
T ss_dssp ----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC-
T ss_pred hhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEe
Confidence 346788899999999999999985 46889999999754321 123467899999988 8999999999999
Q ss_pred eCCeEEEEEec-CCCCCHHHHHhcCC
Q 004822 691 EEGEQMLVYEF-MSNGTLRDQLSGIF 715 (728)
Q Consensus 691 ~~~~~~lV~Ey-~~~GsL~~~L~~~~ 715 (728)
..+..++|+|| +++|+|.+++....
T Consensus 109 ~~~~~~~v~e~~~~~~~L~~~l~~~~ 134 (312)
T 2iwi_A 109 TQEGFMLVLERPLPAQDLFDYITEKG 134 (312)
T ss_dssp ----CEEEEECCSSEEEHHHHHHHHC
T ss_pred cCCeEEEEEEecCCCCCHHHHHHhcC
Confidence 88899999999 89999999998654
No 370
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.89 E-value=8.7e-10 Score=118.03 Aligned_cols=94 Identities=15% Similarity=0.185 Sum_probs=73.6
Q ss_pred hcCCcccCCceeccCceEEEEEEeCC------CCEEEEEEcccCChhc-----------HHHHHHHHHHHhcCCCCcccc
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPD------GTVVAVKRAQEGSLQG-----------EKEFLTEIQFLSRLHHRNLVS 684 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~------g~~vAvK~l~~~~~~~-----------~~~f~~E~~~l~~l~H~niv~ 684 (728)
..++|...+.||+|+||.||+|.... ++.||||++....... ...+..|+..+..++|+|||+
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 34578889999999999999998754 4789999987654211 123556777888899999999
Q ss_pred eeEEEEeC----CeEEEEEecCCCCCHHHHHhcCCC
Q 004822 685 LVGYCDEE----GEQMLVYEFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 685 l~g~~~~~----~~~~lV~Ey~~~GsL~~~L~~~~~ 716 (728)
+++++... ...++||||+ +|+|.+++.....
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~ 147 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAK 147 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTS
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccC
Confidence 99999764 4589999999 9999999987533
No 371
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=98.89 E-value=1.3e-09 Score=114.89 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=76.2
Q ss_pred CcccC-CceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEE
Q 004822 625 NFNSS-TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 625 ~~~~~-~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.|... +.||+|+||.||+|... +|+.||||++.... ....+++.+|+.++.++ +||||+++++++...+..++||
T Consensus 29 ~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~~~~~~lv~ 108 (327)
T 3lm5_A 29 FYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYENTSEIILIL 108 (327)
T ss_dssp HEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred EEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEeCCeEEEEE
Confidence 34444 78999999999999864 58999999987532 23356899999999999 5699999999999999999999
Q ss_pred ecCCCCCHHHHHhcC
Q 004822 700 EFMSNGTLRDQLSGI 714 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~ 714 (728)
||+++|+|.+++...
T Consensus 109 e~~~~~~L~~~~~~~ 123 (327)
T 3lm5_A 109 EYAAGGEIFSLCLPE 123 (327)
T ss_dssp ECCTTEEGGGGGSSC
T ss_pred EecCCCcHHHHHHHh
Confidence 999999999998653
No 372
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=98.87 E-value=8.1e-10 Score=118.38 Aligned_cols=91 Identities=23% Similarity=0.409 Sum_probs=68.3
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC--ChhcHHHHHHHHHHHhcCCCCcccceeEEEEeC------C
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG--SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE------G 693 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~--~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~------~ 693 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++... .....+.+.+|+++++.++|||||++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 46788889999999999999984 46899999999653 223446789999999999999999999998654 5
Q ss_pred eEEEEEecCCCCCHHHHHhcC
Q 004822 694 EQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 694 ~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
..++|+||+ +|+|.+++...
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~ 127 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ 127 (367)
T ss_dssp CCEEEEECC-CEECC-----C
T ss_pred eEEEEeccc-CCCHHHHHhcC
Confidence 679999999 68999988753
No 373
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=98.86 E-value=5.2e-09 Score=110.03 Aligned_cols=89 Identities=24% Similarity=0.418 Sum_probs=73.2
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC-hhcHHHHHHHHH-HHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS-LQGEKEFLTEIQ-FLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~-~~~~~~f~~E~~-~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.++|...+.||+|+||.||+|... +|+.||||++.... ....+++..|+. +++.++||||++++|++...+..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 456888899999999999999964 68999999997643 233445666766 677889999999999999999999999
Q ss_pred ecCCCCCHHHHHh
Q 004822 700 EFMSNGTLRDQLS 712 (728)
Q Consensus 700 Ey~~~GsL~~~L~ 712 (728)
||+++ +|.+++.
T Consensus 101 e~~~~-~l~~~~~ 112 (327)
T 3aln_A 101 ELMST-SFDKFYK 112 (327)
T ss_dssp CCCSE-EHHHHHH
T ss_pred eecCC-ChHHHHH
Confidence 99995 8888876
No 374
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.86 E-value=2.9e-09 Score=110.97 Aligned_cols=92 Identities=30% Similarity=0.455 Sum_probs=72.6
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCC-----hhcHHHHHHHHHHHhcC---CCCcccceeEEEEeCC
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGS-----LQGEKEFLTEIQFLSRL---HHRNLVSLVGYCDEEG 693 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~-----~~~~~~f~~E~~~l~~l---~H~niv~l~g~~~~~~ 693 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++.... ......+.+|+++++++ +|||||+++++|....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~ 87 (308)
T 3g33_A 8 TSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSR 87 (308)
T ss_dssp --CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECC
T ss_pred ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccC
Confidence 56788899999999999999995 468999999986322 11124677788777766 4999999999998755
Q ss_pred -----eEEEEEecCCCCCHHHHHhcCC
Q 004822 694 -----EQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 694 -----~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
..++||||++ |+|.+++....
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~~~~~~ 113 (308)
T 3g33_A 88 TDREIKVTLVFEHVD-QDLRTYLDKAP 113 (308)
T ss_dssp SSSEEEEEEEEECCC-CBHHHHHHTCC
T ss_pred CCCceeEEEEehhhh-cCHHHHHhhcc
Confidence 4799999998 69999998754
No 375
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.85 E-value=1e-09 Score=116.63 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCcccCCceeccCceEEEEEEeC----CCCEEEEEEcccCChh-----------cHHHHHHHHHHHhcCCCCcccceeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP----DGTVVAVKRAQEGSLQ-----------GEKEFLTEIQFLSRLHHRNLVSLVGY 688 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~----~g~~vAvK~l~~~~~~-----------~~~~f~~E~~~l~~l~H~niv~l~g~ 688 (728)
++|...+.||+|+||.||+|... .+..||||+....... ..+.+.+|+..+..++||||++++++
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~ 116 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS 116 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence 56888899999999999999975 5678999998754321 11347789999999999999999999
Q ss_pred EEe----CCeEEEEEecCCCCCHHHHHhcCC
Q 004822 689 CDE----EGEQMLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 689 ~~~----~~~~~lV~Ey~~~GsL~~~L~~~~ 715 (728)
+.. ....++||||+ +|+|.+++....
T Consensus 117 ~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~ 146 (345)
T 2v62_A 117 GLTEFKGRSYRFMVMERL-GIDLQKISGQNG 146 (345)
T ss_dssp EEEESSSCEEEEEEEECE-EEEHHHHCBGGG
T ss_pred cccccCCCcEEEEEEecc-CCCHHHHHHhcC
Confidence 987 67889999999 999999998654
No 376
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=98.85 E-value=1e-09 Score=116.95 Aligned_cols=85 Identities=14% Similarity=0.216 Sum_probs=72.4
Q ss_pred CCcccCCceeccCceEEEEEEeCC---------CCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccc----------
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPD---------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVS---------- 684 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~---------g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~---------- 684 (728)
++|...+.||+|+||.||+|.... ++.||||.+... +.+.+|++++.+++|||||+
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~ 116 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL 116 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence 568888999999999999999653 789999999754 36889999999999999988
Q ss_pred -----eeEEEEe-CCeEEEEEecCCCCCHHHHHhcC
Q 004822 685 -----LVGYCDE-EGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 685 -----l~g~~~~-~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
+++++.. .+..++||||+ +|+|.+++...
T Consensus 117 ~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~ 151 (352)
T 2jii_A 117 LAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS 151 (352)
T ss_dssp CSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS
T ss_pred cCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC
Confidence 6788876 67889999999 99999999864
No 377
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=98.84 E-value=1.3e-09 Score=116.08 Aligned_cols=89 Identities=26% Similarity=0.389 Sum_probs=74.1
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCC--hhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe------
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGS--LQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE------ 694 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~--~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------ 694 (728)
.+|...+.||+|+||.||+|... +|+.||||++.... ....+.+.+|+.++++++|||||++++++...+.
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 103 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFYD 103 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCCC
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEeccccccccee
Confidence 56778899999999999999864 58999999996532 2234678999999999999999999999976543
Q ss_pred EEEEEecCCCCCHHHHHhc
Q 004822 695 QMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~ 713 (728)
.++||||++ |+|.+++..
T Consensus 104 ~~lv~e~~~-~~l~~~~~~ 121 (353)
T 3coi_A 104 FYLVMPFMQ-TDLQKIMGL 121 (353)
T ss_dssp CEEEEECCS-EEGGGTTTS
T ss_pred EEEEecccc-CCHHHHhcC
Confidence 499999998 688887754
No 378
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=98.84 E-value=2.4e-09 Score=117.25 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=74.8
Q ss_pred hcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEEe
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~E 700 (728)
...+|...++||+|+||+||.....+|+.||||++...... .+.+|+++++++ +|||||++++++...+..++|||
T Consensus 22 ~~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~---~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E 98 (432)
T 3p23_A 22 GKISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS---FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIE 98 (432)
T ss_dssp TTEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE---ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH---HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEE
Confidence 34457888999999999966554557899999999654322 356899999999 89999999999999999999999
Q ss_pred cCCCCCHHHHHhcCC
Q 004822 701 FMSNGTLRDQLSGIF 715 (728)
Q Consensus 701 y~~~GsL~~~L~~~~ 715 (728)
||+ |+|.+++....
T Consensus 99 ~~~-g~L~~~l~~~~ 112 (432)
T 3p23_A 99 LCA-ATLQEYVEQKD 112 (432)
T ss_dssp CCS-EEHHHHHHSSS
T ss_pred CCC-CCHHHHHHhcC
Confidence 997 69999998654
No 379
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=98.84 E-value=4.1e-09 Score=115.61 Aligned_cols=86 Identities=23% Similarity=0.162 Sum_probs=72.6
Q ss_pred cccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEEecCCC
Q 004822 626 FNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVYEFMSN 704 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~Ey~~~ 704 (728)
+...++||+|+||+||.+...+|+.||||++... ..+.+.+|++++.++ +|||||++++++...+..++|||||+
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~- 92 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN- 92 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS-
T ss_pred eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC-
Confidence 4446789999999998766667999999998653 234678999999886 89999999999999999999999996
Q ss_pred CCHHHHHhcCC
Q 004822 705 GTLRDQLSGIF 715 (728)
Q Consensus 705 GsL~~~L~~~~ 715 (728)
|+|.+++....
T Consensus 93 gsL~~~l~~~~ 103 (434)
T 2rio_A 93 LNLQDLVESKN 103 (434)
T ss_dssp EEHHHHHHTC-
T ss_pred CCHHHHHhccC
Confidence 79999998653
No 380
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=98.84 E-value=5e-10 Score=127.51 Aligned_cols=92 Identities=28% Similarity=0.465 Sum_probs=76.7
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccC-ChhcHHHHHHHHHHHhcCCCCcccceeEEEEe------CCeE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEG-SLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE------EGEQ 695 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~-~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~------~~~~ 695 (728)
++|...+.||+|+||.||+|.. .+|+.||||++... .....+.|.+|++++++++|||||++++++.. .+..
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~ 93 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP 93 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence 5688899999999999999986 45889999998754 33345679999999999999999999998754 5678
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+++|+|.+++....
T Consensus 94 ~LVmEy~~ggsL~~~L~~~~ 113 (676)
T 3qa8_A 94 LLAMEYCEGGDLRKYLNQFE 113 (676)
T ss_dssp CCEEECCSSCBHHHHHHSSS
T ss_pred EEEEEeCCCCCHHHHHHhcc
Confidence 99999999999999998643
No 381
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.83 E-value=6e-09 Score=113.22 Aligned_cols=81 Identities=25% Similarity=0.417 Sum_probs=64.1
Q ss_pred CCceeccCceEEEEEEeC---CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEe--CCeEEEEEecCC
Q 004822 629 STQIGQGGYGKVYKGILP---DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDE--EGEQMLVYEFMS 703 (728)
Q Consensus 629 ~~~iG~G~fg~Vy~~~~~---~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~--~~~~~lV~Ey~~ 703 (728)
.++||+|+||.||+|... +++.||||++..... .+.+.+|++++++++|||||++++++.. ....++||||++
T Consensus 26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~~--~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~ 103 (405)
T 3rgf_A 26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTGI--SMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAE 103 (405)
T ss_dssp SCCCC-----EEEEEEESSSSCCCCEEEEECSSSSC--CHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCS
T ss_pred CcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCCC--CHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCC
Confidence 468999999999999965 478899999975432 2468899999999999999999999965 568999999998
Q ss_pred CCCHHHHHh
Q 004822 704 NGTLRDQLS 712 (728)
Q Consensus 704 ~GsL~~~L~ 712 (728)
|+|.+++.
T Consensus 104 -~~l~~~~~ 111 (405)
T 3rgf_A 104 -HDLWHIIK 111 (405)
T ss_dssp -EEHHHHHH
T ss_pred -CCHHHHHH
Confidence 58888886
No 382
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=98.83 E-value=3.7e-09 Score=112.70 Aligned_cols=93 Identities=29% Similarity=0.369 Sum_probs=63.6
Q ss_pred HHHhhcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe--
Q 004822 618 EMALATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE-- 694 (728)
Q Consensus 618 ~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~-- 694 (728)
+.....++|...+.||+|+||.||+|... +|+.||||++..... ....+.+|++.++.++|||||++++++...+.
T Consensus 17 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~~ 95 (360)
T 3e3p_A 17 RSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPR-FRNRELQIMQDLAVLHHPNIVQLQSYFYTLGERD 95 (360)
T ss_dssp HHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCTT-CCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSSC
T ss_pred hchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCcc-ccHHHHHHHHHHHhcCCCCcccHHHhhhcccccc
Confidence 34556678999999999999999999964 589999999865432 22356788888999999999999999976443
Q ss_pred -----EEEEEecCCCCCHHHHHh
Q 004822 695 -----QMLVYEFMSNGTLRDQLS 712 (728)
Q Consensus 695 -----~~lV~Ey~~~GsL~~~L~ 712 (728)
.++||||+++ +|.+.+.
T Consensus 96 ~~~~~~~lv~e~~~~-~l~~~~~ 117 (360)
T 3e3p_A 96 RRDIYLNVVMEYVPD-TLHRCCR 117 (360)
T ss_dssp TTCEEEEEEEECCSC-BHHHHHH
T ss_pred ccceeEEEEeecccc-cHHHHHH
Confidence 7899999996 5554443
No 383
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.82 E-value=9.3e-08 Score=103.32 Aligned_cols=284 Identities=11% Similarity=0.173 Sum_probs=167.4
Q ss_pred CCcceeEEECCCCC---CccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCC
Q 004822 80 GYLHLRELQLLNLN---LSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKL 156 (728)
Q Consensus 80 ~~~~l~~L~l~~~~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 156 (728)
+..+|+.+.+..+. ++..-..+|.++.+|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +.......|..+.+|
T Consensus 85 ~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L 162 (394)
T 4gt6_A 85 NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSL 162 (394)
T ss_dssp TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccccc
Confidence 44678888887653 55555667888899998888655 55466677889999999999754 444666778889999
Q ss_pred CEEEeeccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCCCCCcCC--------------
Q 004822 157 DRIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTGYLPPEL-------------- 222 (728)
Q Consensus 157 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l-------------- 222 (728)
+.+.+..+ ++.+...+|.+ .+|+.+.+..+.. ......|..+.+++......+..... ...+
T Consensus 163 ~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 238 (394)
T 4gt6_A 163 HTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAI-DNVLYEKSANGDYALIRY 238 (394)
T ss_dssp CEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBS-SSCEEEECTTSCEEEEEC
T ss_pred ccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceecccccccccc-cceeeccccccccccccc
Confidence 99998765 45455556654 6788888876543 23445677777777776655443311 1111
Q ss_pred CCCCCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCCCCCCCCCcCEEEccCCCCcccCCCCCcc--CCcc
Q 004822 223 SELPKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMPDLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNIT 300 (728)
Q Consensus 223 ~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~ 300 (728)
.....+..+.+..+ ++. .-...|.++.+|+.+.+..+..+-....+.+++.|+.+.+. +.++ .++...|. .+|+
T Consensus 239 ~~~~~~~~~~ip~~-v~~-i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~ 314 (394)
T 4gt6_A 239 PSQREDPAFKIPNG-VAR-IETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLK 314 (394)
T ss_dssp CTTCCCSEEECCTT-EEE-ECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCC
T ss_pred ccccccceEEcCCc-ceE-cccceeeecccccEEecccccceecCcccccccccccccCC-Cccc-ccCceeecCCCCcC
Confidence 01122233332211 111 11235667777777777655443222256677777777775 3444 56655554 5777
Q ss_pred EEEccCCCCCCcCchhccCCccCceeecccccCcccCCc-chhhhccCCCCCCcEEECcCCcCCCcCCCCCCCCceEEEc
Q 004822 301 TIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPS-SIWQSRTLNATETFILDFQNNNLTNISGSFNIPPNVTVRL 379 (728)
Q Consensus 301 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~-~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~~~~~l~~l~l 379 (728)
.++|..+ ++.....+|.++.+|+.+.+..+ ++ .|.. .|. ++.+|+.+++.+|.... ..-.....++.+.+
T Consensus 315 ~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~-~I~~~aF~-----~C~~L~~i~~~~~~~~~-~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 315 SIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VT-KIPESAFS-----NCTALNNIEYSGSRSQW-NAISTDSGLQNLPV 385 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEEECTT-CC-BCCGGGGT-----TCTTCCEEEESSCHHHH-HTCBCCCCC-----
T ss_pred EEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cC-EEhHhHhh-----CCCCCCEEEECCceeeh-hhhhccCCCCEEEe
Confidence 7777654 55455567777788888877544 55 3433 344 66777777777764321 11122344555555
Q ss_pred CCC
Q 004822 380 RGN 382 (728)
Q Consensus 380 ~~N 382 (728)
..|
T Consensus 386 ~~~ 388 (394)
T 4gt6_A 386 APG 388 (394)
T ss_dssp ---
T ss_pred CCC
Confidence 444
No 384
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=98.82 E-value=2.6e-09 Score=112.18 Aligned_cols=93 Identities=30% Similarity=0.480 Sum_probs=73.9
Q ss_pred hhcCCcccCCceeccCceEEEEEEe--CCCCEEEEEEcccCCh--hcHHHHHHHHHHHhcC---CCCcccceeEEEE---
Q 004822 621 LATNNFNSSTQIGQGGYGKVYKGIL--PDGTVVAVKRAQEGSL--QGEKEFLTEIQFLSRL---HHRNLVSLVGYCD--- 690 (728)
Q Consensus 621 ~~~~~~~~~~~iG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~--~~~~~f~~E~~~l~~l---~H~niv~l~g~~~--- 690 (728)
...++|...+.||+|+||.||+|.. .+|+.||||+++.... .....+.+|+.+++.+ +||||+++++++.
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 3456788899999999999999996 4578999999864321 1123567787777666 8999999999997
Q ss_pred --eCCeEEEEEecCCCCCHHHHHhcC
Q 004822 691 --EEGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 691 --~~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.....++||||++ |+|.+++...
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~ 112 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKV 112 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHS
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhc
Confidence 4567899999998 7999999864
No 385
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=98.79 E-value=1.2e-08 Score=105.52 Aligned_cols=89 Identities=20% Similarity=0.367 Sum_probs=74.7
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEE-EeCCeEEEEEe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYC-DEEGEQMLVYE 700 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~-~~~~~~~lV~E 700 (728)
.++|...+.||+|+||.||+|.. .+|+.||||++...... +++.+|++++..++|++++..++++ ...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSSC--CHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcch--hHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 45788889999999999999995 56899999998654332 3688999999999999888777776 55677899999
Q ss_pred cCCCCCHHHHHhcC
Q 004822 701 FMSNGTLRDQLSGI 714 (728)
Q Consensus 701 y~~~GsL~~~L~~~ 714 (728)
|+ +|+|.+++...
T Consensus 86 ~~-~~~L~~~~~~~ 98 (296)
T 3uzp_A 86 LL-GPSLEDLFNFC 98 (296)
T ss_dssp CC-CCBHHHHHHHT
T ss_pred ec-CCCHHHHHHhh
Confidence 99 99999999843
No 386
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=98.78 E-value=1.3e-08 Score=107.62 Aligned_cols=88 Identities=17% Similarity=0.258 Sum_probs=68.1
Q ss_pred cCCccc-CCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHH-HHHhcCCCCcccceeEEEEe----CCeE
Q 004822 623 TNNFNS-STQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEI-QFLSRLHHRNLVSLVGYCDE----EGEQ 695 (728)
Q Consensus 623 ~~~~~~-~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~-~~l~~l~H~niv~l~g~~~~----~~~~ 695 (728)
.++|.. .++||+|+||.||+|... +|+.||||++.... ...+|+ ..+..++||||+++++++.. ....
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSP-----KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSH-----HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcH-----HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 345666 457999999999999965 58999999996532 122222 34566799999999999876 4458
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+++|+|.+++....
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~ 121 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERG 121 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-
T ss_pred EEEEeccCCCCHHHHHHhcC
Confidence 99999999999999998653
No 387
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=98.76 E-value=5.8e-09 Score=111.86 Aligned_cols=90 Identities=11% Similarity=-0.036 Sum_probs=61.4
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCCh---hcHHHHHHHH---HHHhcCCCCccccee-------EE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL---QGEKEFLTEI---QFLSRLHHRNLVSLV-------GY 688 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~---~~~~~f~~E~---~~l~~l~H~niv~l~-------g~ 688 (728)
..+|...+.||+|+||.||+|... +|+.||||++..... ...+.+.+|+ ..++. +|||||+++ ++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~ 139 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA 139 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence 345778899999999999999964 689999999987543 2234677885 45555 799987755 45
Q ss_pred EEeC-----------------CeEEEEEecCCCCCHHHHHhcC
Q 004822 689 CDEE-----------------GEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 689 ~~~~-----------------~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
+... ...++|||||+ |+|.++++..
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~ 181 (371)
T 3q60_A 140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL 181 (371)
T ss_dssp EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH
T ss_pred eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh
Confidence 5433 23799999999 9999999864
No 388
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=2.7e-09 Score=113.47 Aligned_cols=133 Identities=18% Similarity=0.204 Sum_probs=60.7
Q ss_pred CCCCCCcEEECcCCCCCCCCCcCCCCCCCCcEEEcccccCCCCCCccccc--CCCCCcEEEccC--CcCcc------CCC
Q 004822 199 SRLPSLVHMLLDNNNLTGYLPPELSELPKLLILQLDNNNFEGTTIPASYS--NMSKLLKLSLRN--CSLQG------PMP 268 (728)
Q Consensus 199 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~p~~~~--~l~~L~~L~L~~--n~l~~------~~~ 268 (728)
..+++|+.|++++|.-. .++. + .+++|+.|++..+.+.. .....+. .+++|+.|+|+. |...+ ..+
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~-~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPD-SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCH-HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCCh-HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 34455555555544201 1121 2 24566666666555432 1111222 456666666542 11111 111
Q ss_pred CC--CCCCCcCEEEccCCCCcccCCCCC----ccCCccEEEccCCCCCCcC----chhccCCccCceeecccccCcc
Q 004822 269 DL--SRIPNLGYLDLSSNQLNGSIPPGR----LSLNITTIKLSNNKLTGTI----PSNFSGLPRLQRLFIANNSLSG 335 (728)
Q Consensus 269 ~l--~~l~~L~~L~Ls~N~l~~~ip~~~----~~~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~ 335 (728)
.+ ..+++|+.|+|++|.+.+..+... ..++|+.|+|+.|.+++.- +..+..+++|+.|+|++|.|+.
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 11 235667777776666653221111 1245666666666665432 2222345666666666666653
No 389
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=98.74 E-value=2.4e-08 Score=109.32 Aligned_cols=90 Identities=19% Similarity=0.261 Sum_probs=75.4
Q ss_pred CCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcC------CCCcccceeEEEEeCCeEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL------HHRNLVSLVGYCDEEGEQM 696 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l------~H~niv~l~g~~~~~~~~~ 696 (728)
..|...++||+|+||.||+|... +++.||||+++.. ....+++.+|++++..+ .|+||+++++++...+..+
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~ 175 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHIC 175 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEE
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEE
Confidence 45888899999999999999854 5889999999754 23345688888888876 5779999999999999999
Q ss_pred EEEecCCCCCHHHHHhcCC
Q 004822 697 LVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 697 lV~Ey~~~GsL~~~L~~~~ 715 (728)
+||||++ |+|.+++....
T Consensus 176 lv~e~~~-~~L~~~l~~~~ 193 (429)
T 3kvw_A 176 MTFELLS-MNLYELIKKNK 193 (429)
T ss_dssp EEECCCC-CBHHHHHHHTT
T ss_pred EEEeccC-CCHHHHHHhcc
Confidence 9999997 69999998653
No 390
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=98.73 E-value=7.1e-09 Score=112.00 Aligned_cols=89 Identities=17% Similarity=0.246 Sum_probs=72.8
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC--------CCcccceeEEEE----
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH--------HRNLVSLVGYCD---- 690 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~--------H~niv~l~g~~~---- 690 (728)
++|...+.||+|+||.||+|.. .+++.||||+++.. ....+.+.+|++++++++ |+|||++++++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~ 115 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGV 115 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEET
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCC
Confidence 5688889999999999999985 45889999999754 233467899999999986 788999999987
Q ss_pred eCCeEEEEEecCCCCCHHHHHhcC
Q 004822 691 EEGEQMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 691 ~~~~~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.....++||||+ +|+|.+++...
T Consensus 116 ~~~~~~lv~e~~-~~~l~~~~~~~ 138 (397)
T 1wak_A 116 NGTHICMVFEVL-GHHLLKWIIKS 138 (397)
T ss_dssp TEEEEEEEECCC-CCBHHHHHHHT
T ss_pred CCceEEEEEecc-CccHHHHHHhc
Confidence 445789999999 56777776543
No 391
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=98.73 E-value=1.8e-08 Score=106.19 Aligned_cols=90 Identities=23% Similarity=0.351 Sum_probs=76.5
Q ss_pred CCcccCCceeccCceEEEEEEe--CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCc------ccceeEEEEeCCeE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL--PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN------LVSLVGYCDEEGEQ 695 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~--~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~~~ 695 (728)
++|...+.||+|+||.||+|.. .+++.||||+++... ...+.+.+|++++..++|++ ++++++++...+..
T Consensus 14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~ 92 (339)
T 1z57_A 14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI 92 (339)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence 4688889999999999999985 358899999997542 33457889999999887665 99999999999999
Q ss_pred EEEEecCCCCCHHHHHhcCC
Q 004822 696 MLVYEFMSNGTLRDQLSGIF 715 (728)
Q Consensus 696 ~lV~Ey~~~GsL~~~L~~~~ 715 (728)
++||||+ +|+|.+++....
T Consensus 93 ~lv~e~~-~~~l~~~l~~~~ 111 (339)
T 1z57_A 93 CIVFELL-GLSTYDFIKENG 111 (339)
T ss_dssp EEEEECC-CCBHHHHHHHTT
T ss_pred EEEEcCC-CCCHHHHHHhcC
Confidence 9999999 899999998653
No 392
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=98.73 E-value=2.6e-08 Score=111.97 Aligned_cols=86 Identities=9% Similarity=0.148 Sum_probs=64.2
Q ss_pred ccCCceeccCceEEEEEEeCCCCEEEEEEcccCChh--------cHHHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEE
Q 004822 627 NSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQ--------GEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLV 698 (728)
Q Consensus 627 ~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~--------~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV 698 (728)
...++||+|+||.||+|.. .+..+|+|+....... ..+.|.+|++++++++|||||++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 3467899999999999965 5788999986432211 124589999999999999999888888888888999
Q ss_pred EecCCCCCHHHHHhc
Q 004822 699 YEFMSNGTLRDQLSG 713 (728)
Q Consensus 699 ~Ey~~~GsL~~~L~~ 713 (728)
||||++|+|.++++.
T Consensus 418 mE~~~ggsL~~~l~~ 432 (540)
T 3en9_A 418 MSYINGKLAKDVIED 432 (540)
T ss_dssp EECCCSEEHHHHSTT
T ss_pred EECCCCCCHHHHHHH
Confidence 999999999999886
No 393
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=98.73 E-value=1.6e-08 Score=104.42 Aligned_cols=89 Identities=20% Similarity=0.367 Sum_probs=71.4
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEE-EeCCeEEEEEe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYC-DEEGEQMLVYE 700 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~-~~~~~~~lV~E 700 (728)
.++|...+.||+|+||.||+|.. .+++.||||.+...... +++.+|++++..++|++++..+++| ...+..++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 4hgt_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp ---CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C--CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc--hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEEE
Confidence 46788899999999999999985 56889999987543222 3588999999999999888888777 55678899999
Q ss_pred cCCCCCHHHHHhcC
Q 004822 701 FMSNGTLRDQLSGI 714 (728)
Q Consensus 701 y~~~GsL~~~L~~~ 714 (728)
|+ +|+|.+++...
T Consensus 86 ~~-~~~L~~~~~~~ 98 (296)
T 4hgt_A 86 LL-GPSLEDLFNFC 98 (296)
T ss_dssp CC-CCBHHHHHHHT
T ss_pred cc-CCCHHHHHHHh
Confidence 99 99999999853
No 394
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=3.5e-09 Score=112.59 Aligned_cols=183 Identities=12% Similarity=0.189 Sum_probs=96.5
Q ss_pred cceeEEECCCCCCcc-c-------cCccccCCCCCCEEEccCCCCc---------cCCCccccCCCCCcEEeccCCcCCC
Q 004822 82 LHLRELQLLNLNLSG-N-------LSPEIGRLSYLTILDFMWNKIS---------GSIPKEIGNIKSLELLLLNGNELTG 144 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~Ls~n~l~---------~~~p~~~~~l~~L~~L~L~~N~l~~ 144 (728)
.+++.|.+......+ . +..++..+++|+.|.+..+... +.+...+..+++|+.|+|++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 467788777655442 1 1233556788888888665331 112333455677777777766311
Q ss_pred cCCccCCCCCCCCEEEeeccCCCCCCcHhhh--ccCCCCEEEccC--cccccccccccCCCCCCcEEECcCCCCCCCCCc
Q 004822 145 SLPEELGYLPKLDRIQIDQNYISGSLPKSFA--NLNKTRHFHMNN--NSISGQIPPELSRLPSLVHMLLDNNNLTGYLPP 220 (728)
Q Consensus 145 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~--N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 220 (728)
.++. + .+++|++|+|..|.+.......+. .+++|++|+|+. |...+.. .+ .. +..
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~~---~~--------------l~~ 244 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--DM---NV--------------FRP 244 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--CG---GG--------------TGG
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--hH---HH--------------HHH
Confidence 2222 2 266777777776665533333333 566666666642 1111100 00 00 000
Q ss_pred CC--CCCCCCcEEEcccccCCCCCCcccc---cCCCCCcEEEccCCcCccCC----C-CCCCCCCcCEEEccCCCCc
Q 004822 221 EL--SELPKLLILQLDNNNFEGTTIPASY---SNMSKLLKLSLRNCSLQGPM----P-DLSRIPNLGYLDLSSNQLN 287 (728)
Q Consensus 221 ~l--~~l~~L~~L~L~~N~l~~~~~p~~~---~~l~~L~~L~L~~n~l~~~~----~-~l~~l~~L~~L~Ls~N~l~ 287 (728)
.+ ..+++|+.|+|.+|.+.. ..+..+ ..+++|+.|+|+.|.+.+.. + .+..+++|+.|+|++|.++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11 235666666666666543 122222 24667777777777776531 1 2345677888888888776
No 395
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=98.72 E-value=1.4e-08 Score=106.17 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=64.3
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChh-cH-HHHHHHHHHHhcCCCCcccceeEEEEeCCeEEEEE
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQ-GE-KEFLTEIQFLSRLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~-~~-~~f~~E~~~l~~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.++|...+.||+|+||.||+|... +|+.||||++...... .. +.+.++..+++.++||||+++++++...+..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 356777889999999999999975 6899999999764332 22 33455556788889999999999999999999999
Q ss_pred ecCCCCCHHHHHh
Q 004822 700 EFMSNGTLRDQLS 712 (728)
Q Consensus 700 Ey~~~GsL~~~L~ 712 (728)
||+ ++.+..+..
T Consensus 104 e~~-~~~~~~l~~ 115 (318)
T 2dyl_A 104 ELM-GTCAEKLKK 115 (318)
T ss_dssp CCC-SEEHHHHHH
T ss_pred ecc-CCcHHHHHH
Confidence 999 455555554
No 396
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=98.71 E-value=1.6e-08 Score=110.31 Aligned_cols=83 Identities=25% Similarity=0.415 Sum_probs=66.8
Q ss_pred CcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeC----C--eEEE
Q 004822 625 NFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEE----G--EQML 697 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~----~--~~~l 697 (728)
.|...++||+|+||.||+|... +|+.||||++..... .+.+|++++++++|||||++++++... + ..++
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~l 130 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL 130 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEEE
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEEe
Confidence 4777889999999999999975 589999999865422 234799999999999999999998542 1 3679
Q ss_pred EEecCCCCCHHHHHh
Q 004822 698 VYEFMSNGTLRDQLS 712 (728)
Q Consensus 698 V~Ey~~~GsL~~~L~ 712 (728)
||||+++ ++.+.+.
T Consensus 131 v~e~~~~-~l~~~~~ 144 (420)
T 1j1b_A 131 VLDYVPE-TVYRVAR 144 (420)
T ss_dssp EEECCCE-EHHHHHH
T ss_pred ehhcccc-cHHHHHH
Confidence 9999996 6666654
No 397
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=98.71 E-value=3.6e-09 Score=111.02 Aligned_cols=94 Identities=20% Similarity=0.392 Sum_probs=78.2
Q ss_pred hcCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChh------cHHHHHHHHHHHhcCC--CCcccceeEEEEeC
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQ------GEKEFLTEIQFLSRLH--HRNLVSLVGYCDEE 692 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~------~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~ 692 (728)
..++|...+.||+|+||.||+|.. .+++.||||.+...... ..+.+.+|+.++++++ |+||+++++++...
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 446688889999999999999985 46889999998653221 1235778999999996 59999999999999
Q ss_pred CeEEEEEecCCC-CCHHHHHhcCC
Q 004822 693 GEQMLVYEFMSN-GTLRDQLSGIF 715 (728)
Q Consensus 693 ~~~~lV~Ey~~~-GsL~~~L~~~~ 715 (728)
+..++|+||+.. |+|.+++....
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~~~~ 144 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFITERG 144 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHHHHC
T ss_pred CcEEEEEEcCCCCccHHHHHhccC
Confidence 999999999986 89999998654
No 398
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=98.69 E-value=3.1e-08 Score=109.75 Aligned_cols=89 Identities=21% Similarity=0.337 Sum_probs=72.7
Q ss_pred cCCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCC-CcccceeEEEEeCCeEEEEEe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH-RNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H-~niv~l~g~~~~~~~~~lV~E 700 (728)
.++|...++||+|+||.||+|.. .+++.||||++...... +++.+|++++..++| ++++.+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH--PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS--CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc--HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 35688899999999999999995 56899999988654322 358899999999987 455566666677888999999
Q ss_pred cCCCCCHHHHHhcC
Q 004822 701 FMSNGTLRDQLSGI 714 (728)
Q Consensus 701 y~~~GsL~~~L~~~ 714 (728)
|+ +|+|.+++...
T Consensus 84 ~~-g~sL~~ll~~~ 96 (483)
T 3sv0_A 84 LL-GPSLEDLFNFC 96 (483)
T ss_dssp CC-CCBHHHHHHHT
T ss_pred CC-CCCHHHHHHhh
Confidence 99 99999999853
No 399
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=98.68 E-value=1.8e-08 Score=109.01 Aligned_cols=82 Identities=24% Similarity=0.434 Sum_probs=66.0
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcccceeEEEEeCCe------EEE
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNLVSLVGYCDEEGE------QML 697 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~niv~l~g~~~~~~~------~~l 697 (728)
..|...++||+|+||.||+|....+..||+|++...... ..+|+++++.++|||||++++++...+. .++
T Consensus 40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l 115 (394)
T 4e7w_A 40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL 115 (394)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence 357788999999999999999877777999988653221 2379999999999999999999965433 789
Q ss_pred EEecCCCCCHHH
Q 004822 698 VYEFMSNGTLRD 709 (728)
Q Consensus 698 V~Ey~~~GsL~~ 709 (728)
||||++++.+..
T Consensus 116 v~e~~~~~l~~~ 127 (394)
T 4e7w_A 116 VLEYVPETVYRA 127 (394)
T ss_dssp EEECCSEEHHHH
T ss_pred EeeccCccHHHH
Confidence 999999754433
No 400
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=98.61 E-value=3.4e-08 Score=105.75 Aligned_cols=88 Identities=18% Similarity=0.298 Sum_probs=74.6
Q ss_pred CCcccCCceeccCceEEEEEEe-CCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-----------CCcccceeEEEEe
Q 004822 624 NNFNSSTQIGQGGYGKVYKGIL-PDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-----------HRNLVSLVGYCDE 691 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~-~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-----------H~niv~l~g~~~~ 691 (728)
.+|...+.||+|+||.||+|.. .+++.||||++... ....+.+.+|++++.+++ |+||+++++++..
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH 97 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence 5688889999999999999985 46889999999753 233457889999999886 8999999999976
Q ss_pred CC----eEEEEEecCCCCCHHHHHhc
Q 004822 692 EG----EQMLVYEFMSNGTLRDQLSG 713 (728)
Q Consensus 692 ~~----~~~lV~Ey~~~GsL~~~L~~ 713 (728)
.+ ..++||||+ +|+|.+++..
T Consensus 98 ~~~~~~~~~lv~e~~-~~~L~~~~~~ 122 (373)
T 1q8y_A 98 KGPNGVHVVMVFEVL-GENLLALIKK 122 (373)
T ss_dssp EETTEEEEEEEECCC-CEEHHHHHHH
T ss_pred cCCCCceEEEEEecC-CCCHHHHHHH
Confidence 44 689999999 8999999976
No 401
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=98.61 E-value=5.4e-08 Score=104.70 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=75.8
Q ss_pred hcCCcccCCceeccCceEEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-CC-----cccceeEEEEeCCe
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HR-----NLVSLVGYCDEEGE 694 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-H~-----niv~l~g~~~~~~~ 694 (728)
..++|...+.||+|+||.||+|... +++.||||+++.. ....+++.+|++++..++ |+ +||++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 4567888999999999999999854 5789999999753 223456788998888874 55 49999999999999
Q ss_pred EEEEEecCCCCCHHHHHhcC
Q 004822 695 QMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.++||||++ |+|.+++...
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~ 149 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNT 149 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHT
T ss_pred eEEEEecCC-CCHHHHHhhc
Confidence 999999997 5999999864
No 402
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=98.59 E-value=6.7e-08 Score=99.29 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=69.1
Q ss_pred HHHHhhcCCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCCh------------------hcHHHHHHHHHHHhcCC
Q 004822 617 GEMALATNNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL------------------QGEKEFLTEIQFLSRLH 678 (728)
Q Consensus 617 ~~~~~~~~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~------------------~~~~~f~~E~~~l~~l~ 678 (728)
..+......|...+.||+|+||.||+|...+|+.||||.++.... .....|.+|++++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~ 162 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ 162 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence 344444555667789999999999999997799999999964321 12356899999999999
Q ss_pred CCcccceeEEEEeCCeEEEEEecCCCCCHHH
Q 004822 679 HRNLVSLVGYCDEEGEQMLVYEFMSNGTLRD 709 (728)
Q Consensus 679 H~niv~l~g~~~~~~~~~lV~Ey~~~GsL~~ 709 (728)
| +++.+++.. +..++|||||++|+|.+
T Consensus 163 --~-~~v~~~~~~-~~~~lvmE~~~g~~L~~ 189 (282)
T 1zar_A 163 --G-LAVPKVYAW-EGNAVLMELIDAKELYR 189 (282)
T ss_dssp --T-SSSCCEEEE-ETTEEEEECCCCEEGGG
T ss_pred --C-CCcCeEEec-cceEEEEEecCCCcHHH
Confidence 5 777776543 55699999999999988
No 403
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=98.54 E-value=1.1e-07 Score=100.64 Aligned_cols=90 Identities=18% Similarity=0.304 Sum_probs=74.6
Q ss_pred cCCcccCCceeccCceEEEEEEeC-CC-CEEEEEEcccCChhcHHHHHHHHHHHhcCCCCc------ccceeEEEEeCCe
Q 004822 623 TNNFNSSTQIGQGGYGKVYKGILP-DG-TVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN------LVSLVGYCDEEGE 694 (728)
Q Consensus 623 ~~~~~~~~~iG~G~fg~Vy~~~~~-~g-~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~n------iv~l~g~~~~~~~ 694 (728)
.++|...+.||+|+||.||+|... ++ +.||||+++.. ....+.+.+|++++++++|++ ++.+.+++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 356888899999999999999853 34 68999999754 233457889999999998776 9999999999999
Q ss_pred EEEEEecCCCCCHHHHHhcC
Q 004822 695 QMLVYEFMSNGTLRDQLSGI 714 (728)
Q Consensus 695 ~~lV~Ey~~~GsL~~~L~~~ 714 (728)
.++||||+ +|++.+++...
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~ 115 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKEN 115 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHT
T ss_pred EEEEEecc-CCChHHHHHhc
Confidence 99999999 67788887654
No 404
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=98.52 E-value=5.6e-08 Score=109.96 Aligned_cols=85 Identities=16% Similarity=0.034 Sum_probs=62.0
Q ss_pred eeccCceEEEEEE-eCCCCEEEEEEcccCC----------hhcHHHHHHHHHHHhcC-CCCcccceeEEEEeCCeEEEEE
Q 004822 632 IGQGGYGKVYKGI-LPDGTVVAVKRAQEGS----------LQGEKEFLTEIQFLSRL-HHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 632 iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~----------~~~~~~f~~E~~~l~~l-~H~niv~l~g~~~~~~~~~lV~ 699 (728)
.+.|+.|.+..+. +--|+.||||.+.... ....++|.+|+++|+++ .|+||+++++++.+++..||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 4555555555433 2247889999986431 12235799999999999 7999999999999999999999
Q ss_pred ecCCCCCHHHHHhcCCC
Q 004822 700 EFMSNGTLRDQLSGIFS 716 (728)
Q Consensus 700 Ey~~~GsL~~~L~~~~~ 716 (728)
||++||+|.++|.....
T Consensus 322 Eyv~G~~L~d~i~~~~~ 338 (569)
T 4azs_A 322 EKLPGRLLSDMLAAGEE 338 (569)
T ss_dssp ECCCSEEHHHHHHTTCC
T ss_pred ecCCCCcHHHHHHhCCC
Confidence 99999999999987643
No 405
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=1.6e-05 Score=85.14 Aligned_cols=264 Identities=10% Similarity=0.049 Sum_probs=128.8
Q ss_pred cceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEe
Q 004822 82 LHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLDRIQI 161 (728)
Q Consensus 82 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 161 (728)
.+|+.+.+.. +++..-..+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ ++.....+|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 3566666653 455555567778888888888644 554555667665 5666666533 44344444544 36777777
Q ss_pred eccCCCCCCcHhhhccCCCCEEEccCcccccccccccCCCCCCcEEECcCCCCCC------------CCCcCCCCCCCCc
Q 004822 162 DQNYISGSLPKSFANLNKTRHFHMNNNSISGQIPPELSRLPSLVHMLLDNNNLTG------------YLPPELSELPKLL 229 (728)
Q Consensus 162 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------~~~~~l~~l~~L~ 229 (728)
..+ +..+....|.+. +|+.+.+..+ +.......|..+..++.+.+..+.... .....+.....+.
T Consensus 121 p~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (379)
T 4h09_A 121 PGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGT 197 (379)
T ss_dssp CTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCS
T ss_pred CCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccc
Confidence 654 232333344433 4555544433 222334455556666666554433210 0111122223333
Q ss_pred EEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEEEccC
Q 004822 230 ILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTIKLSN 306 (728)
Q Consensus 230 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L~Ls~ 306 (728)
.+.+....-. .....+..+.+|+.+.+..+- ..... .+..+..|+.+.+..+ ++ .+....+. .+|+.+.+..
T Consensus 198 ~~~~~~~~~~--i~~~~f~~~~~l~~i~~~~~~-~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 198 EFTIPSTVKT--VTAYGFSYGKNLKKITITSGV-TTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp EEECCTTCCE--ECTTTTTTCSSCSEEECCTTC-CEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECC
T ss_pred ccccccceeE--Eeecccccccccceeeeccce-eEEccccccCCccceEEEcCCC-cc-EeCccccceeehhccccccc
Confidence 3333222111 122334445555555554432 21222 4455556666666544 33 33333333 4556666543
Q ss_pred CCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCc
Q 004822 307 NKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 365 (728)
Q Consensus 307 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~ 365 (728)
+ ++......|.++++|+.+.+.++.++..-...|. ++.+|+.++|..+ ++.+
T Consensus 273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~-----~c~~L~~i~lp~~-l~~I 324 (379)
T 4h09_A 273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFM-----DCVKLSSVTLPTA-LKTI 324 (379)
T ss_dssp C-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTT-----TCTTCCEEECCTT-CCEE
T ss_pred c-ceeccccccccccccccccccccccceehhhhhc-----CCCCCCEEEcCcc-ccEE
Confidence 3 3334444566666666666666655522223333 4556666666433 4444
No 406
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.43 E-value=2.3e-05 Score=83.79 Aligned_cols=268 Identities=11% Similarity=0.051 Sum_probs=175.5
Q ss_pred CCCCcceeEEECCCCCCccccCccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCC
Q 004822 78 DDGYLHLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNGNELTGSLPEELGYLPKLD 157 (728)
Q Consensus 78 ~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 157 (728)
-.++.+|+.+++.. +++..-..+|.+. +|+.+.+..+ +..+...+|.. .+|+.+.+..+ ++......|.+. +|+
T Consensus 65 F~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~-~~~i~~~~F~~~-~l~ 138 (379)
T 4h09_A 65 FNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGA-TTEIGNYIFYNS-SVK 138 (379)
T ss_dssp TTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCC
T ss_pred hhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCc-cccccccccccc-eee
Confidence 34456899999974 4665556778776 6888888654 55445556665 47999999765 333444455554 677
Q ss_pred EEEeeccCCCCCCcHhhhccCCCCEEEccCccccc------------ccccccCCCCCCcEEECcCCCCCCCCCcCCCCC
Q 004822 158 RIQIDQNYISGSLPKSFANLNKTRHFHMNNNSISG------------QIPPELSRLPSLVHMLLDNNNLTGYLPPELSEL 225 (728)
Q Consensus 158 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~------------~~p~~~~~l~~L~~L~L~~N~l~~~~~~~l~~l 225 (728)
.+.+..+ ++.+....|.++.+++.+.+..+.... .....+.....+..+.+..... ......+...
T Consensus 139 ~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~ 216 (379)
T 4h09_A 139 RIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYG 216 (379)
T ss_dssp EEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTC
T ss_pred eeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeecccccc
Confidence 7766543 444556778888888888776654321 1223344555666665544332 2445566777
Q ss_pred CCCcEEEcccccCCCCCCcccccCCCCCcEEEccCCcCccCCC-CCCCCCCcCEEEccCCCCcccCCCCCcc--CCccEE
Q 004822 226 PKLLILQLDNNNFEGTTIPASYSNMSKLLKLSLRNCSLQGPMP-DLSRIPNLGYLDLSSNQLNGSIPPGRLS--LNITTI 302 (728)
Q Consensus 226 ~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~l~~l~~L~~L~Ls~N~l~~~ip~~~~~--~~L~~L 302 (728)
.+|+.+.+..+- .. .....+.++.+|+.+.+..+ ++.... .+..+.+|+.+.+..+ +. .++...+. .+|+.+
T Consensus 217 ~~l~~i~~~~~~-~~-i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 217 KNLKKITITSGV-TT-LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKV 291 (379)
T ss_dssp SSCSEEECCTTC-CE-ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEE
T ss_pred cccceeeeccce-eE-EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccc
Confidence 888888886653 21 23456778888999988765 444444 6778888999988654 44 56655554 789999
Q ss_pred EccCCCCCCcCchhccCCccCceeecccccCcccCCcchhhhccCCCCCCcEEECcCCcCCCc
Q 004822 303 KLSNNKLTGTIPSNFSGLPRLQRLFIANNSLSGSIPSSIWQSRTLNATETFILDFQNNNLTNI 365 (728)
Q Consensus 303 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~ 365 (728)
.+.++.++......|.++.+|+.+.|..+ ++..-..+|. ++.+|+.+.+..+ ++.+
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-----~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFK-----NCKALSTISYPKS-ITLI 347 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-----TCTTCCCCCCCTT-CCEE
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhh-----CCCCCCEEEECCc-cCEE
Confidence 99988888777788999999999999755 6523333454 6677777766543 4433
No 407
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=1.5e-07 Score=90.15 Aligned_cols=43 Identities=7% Similarity=-0.029 Sum_probs=20.0
Q ss_pred cccCCCCCCEEEccCC-CCccC----CCccccCCCCCcEEeccCCcCC
Q 004822 101 EIGRLSYLTILDFMWN-KISGS----IPKEIGNIKSLELLLLNGNELT 143 (728)
Q Consensus 101 ~~~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 143 (728)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 3444555555555555 54421 1222333444555555555444
No 408
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=1.6e-07 Score=89.93 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=52.2
Q ss_pred ccccCCCCCcEEeccCC-cCCCc----CCccCCCCCCCCEEEeeccCCCCC----CcHhhhccCCCCEEEccCcccccc-
Q 004822 124 KEIGNIKSLELLLLNGN-ELTGS----LPEELGYLPKLDRIQIDQNYISGS----LPKSFANLNKTRHFHMNNNSISGQ- 193 (728)
Q Consensus 124 ~~~~~l~~L~~L~L~~N-~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~- 193 (728)
..+...+.|++|+|++| .+... +.+.+...++|++|+|++|.|... +...+...++|++|+|++|.|...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556677777777777 66532 334455566777777777776532 223344445666666666666532
Q ss_pred ---cccccCCCCCCcEEEC--cCCCCC
Q 004822 194 ---IPPELSRLPSLVHMLL--DNNNLT 215 (728)
Q Consensus 194 ---~p~~~~~l~~L~~L~L--~~N~l~ 215 (728)
+...+...++|++|+| ++|.++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 2334444455555555 445554
No 409
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1.2e-07 Score=95.76 Aligned_cols=65 Identities=17% Similarity=0.349 Sum_probs=36.0
Q ss_pred CCCCCCCEEEeeccCCCC--CCcHhhhccCCCCEEEccCcccccccccccCCCC--CCcEEECcCCCCCCC
Q 004822 151 GYLPKLDRIQIDQNYISG--SLPKSFANLNKTRHFHMNNNSISGQIPPELSRLP--SLVHMLLDNNNLTGY 217 (728)
Q Consensus 151 ~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~ 217 (728)
.++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|.|.+. ..+..+. +|++|+|++|.+.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDT 235 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccc
Confidence 345666666666666665 3345556666666666666666543 1222222 555555555555543
No 410
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=4.6e-07 Score=91.37 Aligned_cols=80 Identities=20% Similarity=0.333 Sum_probs=52.6
Q ss_pred cCCCCCcEEeccCCcCCC--cCCccCCCCCCCCEEEeeccCCCCCCcHhhhccC--CCCEEEccCcccccccc-------
Q 004822 127 GNIKSLELLLLNGNELTG--SLPEELGYLPKLDRIQIDQNYISGSLPKSFANLN--KTRHFHMNNNSISGQIP------- 195 (728)
Q Consensus 127 ~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p------- 195 (728)
.++++|+.|+|++|+|++ .+|+.+..+++|+.|+|++|+|++. ..+..+. +|+.|+|++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456677777777777776 3445566777777777777777754 3344444 77777787777765444
Q ss_pred cccCCCCCCcEEE
Q 004822 196 PELSRLPSLVHML 208 (728)
Q Consensus 196 ~~~~~l~~L~~L~ 208 (728)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2355677777665
No 411
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=97.99 E-value=4.6e-06 Score=84.24 Aligned_cols=84 Identities=20% Similarity=0.113 Sum_probs=61.0
Q ss_pred cccCCceeccCceEEEEEEe-CCCCE--EEEEEcccCChh------------------------cHHHHHHHHHHHhcCC
Q 004822 626 FNSSTQIGQGGYGKVYKGIL-PDGTV--VAVKRAQEGSLQ------------------------GEKEFLTEIQFLSRLH 678 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~-~~g~~--vAvK~l~~~~~~------------------------~~~~f~~E~~~l~~l~ 678 (728)
+...+.||+|+||.||+|.. .+|+. ||||.++..... ....+.+|++.+.+++
T Consensus 49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~ 128 (258)
T 1zth_A 49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK 128 (258)
T ss_dssp EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999997 67888 999987543110 1135889999999998
Q ss_pred CCcc--cceeEEEEeCCeEEEEEecCCC-C----CHHHHHhc
Q 004822 679 HRNL--VSLVGYCDEEGEQMLVYEFMSN-G----TLRDQLSG 713 (728)
Q Consensus 679 H~ni--v~l~g~~~~~~~~~lV~Ey~~~-G----sL~~~L~~ 713 (728)
|+++ ...+++ +..++||||+.+ | +|.++...
T Consensus 129 ~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~ 166 (258)
T 1zth_A 129 EAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE 166 (258)
T ss_dssp HTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG
T ss_pred hCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc
Confidence 8865 333332 356899999942 4 78887653
No 412
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.73 E-value=2.5e-05 Score=84.75 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=46.2
Q ss_pred hcCCcccCCceeccCceEEEEEE-eCCCCEEEEEEcccCChh---cHHHHHHHHHHHhcCCC
Q 004822 622 ATNNFNSSTQIGQGGYGKVYKGI-LPDGTVVAVKRAQEGSLQ---GEKEFLTEIQFLSRLHH 679 (728)
Q Consensus 622 ~~~~~~~~~~iG~G~fg~Vy~~~-~~~g~~vAvK~l~~~~~~---~~~~f~~E~~~l~~l~H 679 (728)
.+..|...++||+|+||.||+|. ..+|+.||||++...... ..+.|.+|+.+++.++|
T Consensus 76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~ 137 (413)
T 3dzo_A 76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRG 137 (413)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTT
T ss_pred CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhcc
Confidence 34457778899999999999999 456999999998743222 24679999999999987
No 413
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=97.67 E-value=7.9e-06 Score=86.62 Aligned_cols=85 Identities=13% Similarity=0.217 Sum_probs=55.5
Q ss_pred CcccCCceeccCceEEEEEEeCCCCEEEEEEcccCCh--------------hcHHHH--------HHHHHHHhcCCCCcc
Q 004822 625 NFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSL--------------QGEKEF--------LTEIQFLSRLHHRNL 682 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~--------------~~~~~f--------~~E~~~l~~l~H~ni 682 (728)
-|.....||+|+||.||+|..++|+.||||.++.... .....+ .+|...|.++.+..+
T Consensus 96 iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv 175 (397)
T 4gyi_A 96 VYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGF 175 (397)
T ss_dssp CSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3677889999999999999988899999998753210 011122 345666666654443
Q ss_pred cceeEEEEeCCeEEEEEecCCCCCHHHHH
Q 004822 683 VSLVGYCDEEGEQMLVYEFMSNGTLRDQL 711 (728)
Q Consensus 683 v~l~g~~~~~~~~~lV~Ey~~~GsL~~~L 711 (728)
....-+... ..+|||||++++.|.++.
T Consensus 176 ~vp~p~~~~--~~~LVME~i~G~~L~~l~ 202 (397)
T 4gyi_A 176 PVPEPIAQS--RHTIVMSLVDALPMRQVS 202 (397)
T ss_dssp SCCCEEEEE--TTEEEEECCSCEEGGGCC
T ss_pred CCCeeeecc--CceEEEEecCCccHhhhc
Confidence 222222222 237999999998886654
No 414
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=1.7e-05 Score=74.25 Aligned_cols=34 Identities=6% Similarity=0.066 Sum_probs=14.9
Q ss_pred ceeEEECCCCCCccccCccccCCCCCCEEEccCC
Q 004822 83 HLRELQLLNLNLSGNLSPEIGRLSYLTILDFMWN 116 (728)
Q Consensus 83 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~Ls~n 116 (728)
+|+.||++++.++..--..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 3444444444444333333444444444444444
No 415
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.60 E-value=3.1e-05 Score=72.42 Aligned_cols=34 Identities=12% Similarity=-0.008 Sum_probs=16.9
Q ss_pred CCCEEEccCCCCccCCCccccCCCCCcEEeccCC
Q 004822 107 YLTILDFMWNKISGSIPKEIGNIKSLELLLLNGN 140 (728)
Q Consensus 107 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~N 140 (728)
+|+.||++++.++..--..+..+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555554433333444445555555444
No 416
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=97.09 E-value=0.001 Score=66.81 Aligned_cols=87 Identities=10% Similarity=0.065 Sum_probs=69.0
Q ss_pred CCcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-CCcccceeEEEEeCCeEEEEEecC
Q 004822 624 NNFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 624 ~~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
.+|......+.|+.+.||+.... ++.+++|............+.+|++++..+. |..+.++++++...+..|+||||+
T Consensus 14 ~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i 92 (263)
T 3tm0_A 14 EKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEA 92 (263)
T ss_dssp TTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECC
T ss_pred ccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEEEEec
Confidence 45666677788888999999854 6889999987532122335889999999884 677889999998888999999999
Q ss_pred CCCCHHHHH
Q 004822 703 SNGTLRDQL 711 (728)
Q Consensus 703 ~~GsL~~~L 711 (728)
++.+|.+.+
T Consensus 93 ~G~~l~~~~ 101 (263)
T 3tm0_A 93 DGVLCSEEY 101 (263)
T ss_dssp SSEEHHHHC
T ss_pred CCeehhhcc
Confidence 999998763
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=97.08 E-value=0.00083 Score=68.68 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=61.0
Q ss_pred cCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCC---cccceeEEEEeCCeEEEEEecCCC
Q 004822 628 SSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR---NLVSLVGYCDEEGEQMLVYEFMSN 704 (728)
Q Consensus 628 ~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~---niv~l~g~~~~~~~~~lV~Ey~~~ 704 (728)
..+.++.|.++.||+....+|+.++||+...........|.+|++.++.++|. .+.+++++. ..++||||+++
T Consensus 19 ~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~g 94 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVDE 94 (288)
T ss_dssp EEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCCC
T ss_pred ceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEeccc
Confidence 34678999999999999888999999997544332335789999999999876 577887763 36899999999
Q ss_pred CCH
Q 004822 705 GTL 707 (728)
Q Consensus 705 GsL 707 (728)
+.+
T Consensus 95 ~~~ 97 (288)
T 3d1u_A 95 RPP 97 (288)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 418
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.97 E-value=0.001 Score=59.14 Aligned_cols=58 Identities=24% Similarity=0.344 Sum_probs=40.9
Q ss_pred eeecccccCc-ccCCcchhhhccCCCCCCcEEECcCCcCCCcCCCC--CCCCceEEEcCCCcCCCCCC
Q 004822 325 RLFIANNSLS-GSIPSSIWQSRTLNATETFILDFQNNNLTNISGSF--NIPPNVTVRLRGNPFCLNTN 389 (728)
Q Consensus 325 ~L~L~~N~l~-~~ip~~~~~~~~l~~~~L~~L~l~~N~l~~~~~~~--~~~~l~~l~l~~N~~~~~~~ 389 (728)
.++.+++.++ ..+|..+. .+|+.|+|++|+|+.++... .+++++.|+|++|||.|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp-------~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP-------VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC-------TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC-------cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5566666665 35555433 45677777777777777544 46788899999999999874
No 419
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.79 E-value=0.002 Score=57.18 Aligned_cols=57 Identities=25% Similarity=0.433 Sum_probs=44.4
Q ss_pred CEEEccCCCCc-ccCCCCCccCCccEEEccCCCCCCcCchhccCCccCceeecccccCc
Q 004822 277 GYLDLSSNQLN-GSIPPGRLSLNITTIKLSNNKLTGTIPSNFSGLPRLQRLFIANNSLS 334 (728)
Q Consensus 277 ~~L~Ls~N~l~-~~ip~~~~~~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 334 (728)
..++.+++.++ ..+|.. +..+++.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 356654 5567888888888888777778888888999999888876
No 420
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=96.59 E-value=0.0015 Score=65.16 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=59.9
Q ss_pred cccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCc--ccceeEEEEeCCeEEEEEecCC
Q 004822 626 FNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLVGYCDEEGEQMLVYEFMS 703 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~~~~~lV~Ey~~ 703 (728)
+....+.+.|..+.||+....+|..++||...... ...+.+|++++..+++.+ +.+++++....+..++||||++
T Consensus 22 ~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~~---~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~ 98 (264)
T 1nd4_A 22 YDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGA---LNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVP 98 (264)
T ss_dssp CEEEECSCTTSSCEEEEEECTTSCCEEEEEECSCT---TSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCS
T ss_pred CceEecccCCCCceEEEEecCCCCeEEEEeCCccc---chhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecC
Confidence 33333334666799999988778889999976541 235778999998886545 4568888877778899999999
Q ss_pred CCCHH
Q 004822 704 NGTLR 708 (728)
Q Consensus 704 ~GsL~ 708 (728)
+.+|.
T Consensus 99 G~~l~ 103 (264)
T 1nd4_A 99 GQDLL 103 (264)
T ss_dssp SEETT
T ss_pred CcccC
Confidence 98874
No 421
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.45 E-value=0.00087 Score=63.79 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=20.0
Q ss_pred cCCCCCCEEEccCC-CCccC----CCccccCCCCCcEEeccCCcCC
Q 004822 103 GRLSYLTILDFMWN-KISGS----IPKEIGNIKSLELLLLNGNELT 143 (728)
Q Consensus 103 ~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 143 (728)
.+-+.|++|+|++| +|... +-..+..-+.|+.|+|++|.+.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 34456667777664 55421 1222333444555555555554
No 422
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.38 E-value=0.00081 Score=63.99 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=41.1
Q ss_pred cceeEEECCCC-CCccc----cCccccCCCCCCEEEccCCCCccCCC----ccccCCCCCcEEeccCCcCCCc----CCc
Q 004822 82 LHLRELQLLNL-NLSGN----LSPEIGRLSYLTILDFMWNKISGSIP----KEIGNIKSLELLLLNGNELTGS----LPE 148 (728)
Q Consensus 82 ~~l~~L~l~~~-~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~----~p~ 148 (728)
..|+.|+|+++ .+... +...+..-+.|+.|+|++|.|....- ..+..-+.|++|+|+.|.|+.. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 35666666654 54321 22334445566666666666653222 1223345566666666666522 222
Q ss_pred cCCCCCCCCEEEeecc
Q 004822 149 ELGYLPKLDRIQIDQN 164 (728)
Q Consensus 149 ~~~~l~~L~~L~L~~N 164 (728)
.+..-+.|++|+|++|
T Consensus 121 aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTTTCCCSEEECCCC
T ss_pred HHhhCCceeEEECCCC
Confidence 3344444555555543
No 423
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=94.69 E-value=0.036 Score=36.89 Aligned_cols=30 Identities=20% Similarity=0.461 Sum_probs=20.3
Q ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Q 004822 555 SGISKAALAGIILGAIAGAVTISAIVSLLI 584 (728)
Q Consensus 555 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 584 (728)
++.+.+.++++++|+++++++++++.++++
T Consensus 6 ~~ls~GaIAGiVvG~v~gv~li~~l~~~~~ 35 (38)
T 2k1k_A 6 RGLTGGEIVAVIFGLLLGAALLLGILVFRS 35 (38)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceeeeehHHHHHHHHHHHHHHHHe
Confidence 345678899999998777665555554443
No 424
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=93.61 E-value=0.13 Score=52.01 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=55.4
Q ss_pred cccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCC---cccceeEEEEeCCeEEEEEecC
Q 004822 626 FNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR---NLVSLVGYCDEEGEQMLVYEFM 702 (728)
Q Consensus 626 ~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~---niv~l~g~~~~~~~~~lV~Ey~ 702 (728)
+.....+|.|..+.||+.++.||+.|.||+-..........|.+|++.|+.+.-. -+.+.+++ . ..++||||+
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~--~--~~~lv~e~l 92 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW--D--DRTLAMEWV 92 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE--E--TTEEEEECC
T ss_pred eEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec--c--CceEEEEee
Confidence 3445678999999999999999999999987654333334688999988877422 23444443 2 347899999
Q ss_pred CCCC
Q 004822 703 SNGT 706 (728)
Q Consensus 703 ~~Gs 706 (728)
+.+.
T Consensus 93 ~~~~ 96 (288)
T 3f7w_A 93 DERP 96 (288)
T ss_dssp CCCC
T ss_pred cccC
Confidence 8764
No 425
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=92.70 E-value=0.072 Score=55.86 Aligned_cols=78 Identities=18% Similarity=0.368 Sum_probs=55.8
Q ss_pred CCceeccCceEEEEEEeCCCCEEEEEEcc--cCCh-hcHHHHHHHHHHHhcCC--CCcccceeEEEEeC---CeEEEEEe
Q 004822 629 STQIGQGGYGKVYKGILPDGTVVAVKRAQ--EGSL-QGEKEFLTEIQFLSRLH--HRNLVSLVGYCDEE---GEQMLVYE 700 (728)
Q Consensus 629 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~--~~~~-~~~~~f~~E~~~l~~l~--H~niv~l~g~~~~~---~~~~lV~E 700 (728)
.+.++.|.++.||+....+ ..+++|+.. .... ....++.+|.+++..++ +..+.++++++.+. +..++|||
T Consensus 43 ~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vme 121 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIME 121 (359)
T ss_dssp EEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEEE
T ss_pred EEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEEE
Confidence 3568899999999998754 678888876 4321 22346888999999886 45678899988765 45899999
Q ss_pred cCCCCCH
Q 004822 701 FMSNGTL 707 (728)
Q Consensus 701 y~~~GsL 707 (728)
|+++..+
T Consensus 122 ~v~G~~l 128 (359)
T 3dxp_A 122 FVSGRVL 128 (359)
T ss_dssp CCCCBCC
T ss_pred ecCCeec
Confidence 9998766
No 426
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=92.14 E-value=0.18 Score=34.50 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.6
Q ss_pred chhhhHHHHHHHH
Q 004822 560 AALAGIILGAIAG 572 (728)
Q Consensus 560 ~~~~~i~~~~~~~ 572 (728)
..+++.++|.+++
T Consensus 10 ~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 10 PLIAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHH
Confidence 3444444443333
No 427
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.04 E-value=0.21 Score=34.24 Aligned_cols=13 Identities=23% Similarity=0.296 Sum_probs=5.5
Q ss_pred chhhhHHHHHHHH
Q 004822 560 AALAGIILGAIAG 572 (728)
Q Consensus 560 ~~~~~i~~~~~~~ 572 (728)
..+++.+++.+++
T Consensus 11 ~~IA~gVVgGv~~ 23 (44)
T 2ks1_B 11 PSIATGMVGALLL 23 (44)
T ss_dssp SSSTHHHHHHHHH
T ss_pred ceEEeehhHHHHH
Confidence 3444444443333
No 428
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=90.70 E-value=0.39 Score=32.78 Aligned_cols=28 Identities=18% Similarity=0.357 Sum_probs=12.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 004822 559 KAALAGIILGAIAGAVTISAIVSLLIVRA 587 (728)
Q Consensus 559 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 587 (728)
...+++.++|+ ..++++++.++++++||
T Consensus 11 ~~~Ia~~vVGv-ll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 11 LTSIISAVVGI-LLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHH-HHHHHHHHHHHhheehh
Confidence 34566667663 33333333333444443
No 429
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=90.14 E-value=0.76 Score=46.98 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=59.4
Q ss_pred CCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC---CCcccceeEEEEeCCeEEEEEecCCCC
Q 004822 629 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGYCDEEGEQMLVYEFMSNG 705 (728)
Q Consensus 629 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~~~~~~~~~lV~Ey~~~G 705 (728)
.+.|+.|.+..+|+... ++..++||.-... ....|.+|.+.|+.+. ...+.+.++++...+..++||||+++.
T Consensus 41 ~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G~ 116 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNKS 116 (312)
T ss_dssp EEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCCC
T ss_pred eEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccCC
Confidence 45689999999999886 4678889887543 2456889998888773 356888999888788899999999987
Q ss_pred CH
Q 004822 706 TL 707 (728)
Q Consensus 706 sL 707 (728)
.+
T Consensus 117 ~~ 118 (312)
T 3jr1_A 117 KN 118 (312)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 430
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=89.13 E-value=1.2 Score=44.14 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=58.0
Q ss_pred ceeccCce-EEEEEEeC-CCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-CCcccceeEEEEeCCeEEEEEecCCCCCH
Q 004822 631 QIGQGGYG-KVYKGILP-DGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRNLVSLVGYCDEEGEQMLVYEFMSNGTL 707 (728)
Q Consensus 631 ~iG~G~fg-~Vy~~~~~-~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-H~niv~l~g~~~~~~~~~lV~Ey~~~GsL 707 (728)
.+..|..| .||+-... ++..+.||+-... ...++.+|...|..+. +--+-++++++...+..++||||+++.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 34556665 68987754 4567888886543 3456888999988774 33366888999888999999999999887
Q ss_pred HHHHh
Q 004822 708 RDQLS 712 (728)
Q Consensus 708 ~~~L~ 712 (728)
.+...
T Consensus 108 ~~~~~ 112 (272)
T 4gkh_A 108 FQVLE 112 (272)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 76543
No 431
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=88.36 E-value=0.52 Score=49.99 Aligned_cols=74 Identities=19% Similarity=0.113 Sum_probs=48.3
Q ss_pred CceeccCceEEEEEEeC-CCCEEEEEEcccCCh-------hcHHHHHHHHHHHhcCCC--Cccc-ceeEEEEeCCeEEEE
Q 004822 630 TQIGQGGYGKVYKGILP-DGTVVAVKRAQEGSL-------QGEKEFLTEIQFLSRLHH--RNLV-SLVGYCDEEGEQMLV 698 (728)
Q Consensus 630 ~~iG~G~fg~Vy~~~~~-~g~~vAvK~l~~~~~-------~~~~~f~~E~~~l~~l~H--~niv-~l~g~~~~~~~~~lV 698 (728)
+.+|.|.++.||++... +++.++||....... ...+.+..|.+++..+.+ +..| +++.+ +.+..++|
T Consensus 36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~lv 113 (397)
T 2olc_A 36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVTV 113 (397)
T ss_dssp EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEEE
T ss_pred EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEEE
Confidence 56899999999999754 468899998653211 112346778888887632 4444 45543 34556899
Q ss_pred EecCCCC
Q 004822 699 YEFMSNG 705 (728)
Q Consensus 699 ~Ey~~~G 705 (728)
|||+++.
T Consensus 114 mE~l~g~ 120 (397)
T 2olc_A 114 MEDLSHL 120 (397)
T ss_dssp ECCCTTS
T ss_pred EEeCCCc
Confidence 9999864
No 432
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=86.00 E-value=0.1 Score=56.78 Aligned_cols=60 Identities=5% Similarity=0.046 Sum_probs=17.8
Q ss_pred CCceeccCceEEEEEEeCC-CCEEEE------EEcccCChh--cHHHHHHHHHHHhcCCCCcccceeEEEEe
Q 004822 629 STQIGQGGYGKVYKGILPD-GTVVAV------KRAQEGSLQ--GEKEFLTEIQFLSRLHHRNLVSLVGYCDE 691 (728)
Q Consensus 629 ~~~iG~G~fg~Vy~~~~~~-g~~vAv------K~l~~~~~~--~~~~f~~E~~~l~~l~H~niv~l~g~~~~ 691 (728)
.+.+| ||.||+|.+.. ..+||| |..+.+... ...+|.+|..++...+|+|+++.+++...
T Consensus 147 ~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 147 YEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp TTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred cccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 34566 99999999864 367899 777653322 23479999999999999999999998753
No 433
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=85.27 E-value=1.2 Score=45.66 Aligned_cols=74 Identities=9% Similarity=0.164 Sum_probs=53.3
Q ss_pred CcccCCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCC----CcccceeEEEEeCCeEEEEEe
Q 004822 625 NFNSSTQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH----RNLVSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 625 ~~~~~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H----~niv~l~g~~~~~~~~~lV~E 700 (728)
.+...+.++.|....||+. |..+++|..... .....+.+|.+++..+++ ..+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 3445567899999999987 667888876432 223468899999888866 223455544 56789999
Q ss_pred cCCCCCHH
Q 004822 701 FMSNGTLR 708 (728)
Q Consensus 701 y~~~GsL~ 708 (728)
|+++..+.
T Consensus 108 ~i~G~~l~ 115 (320)
T 3r70_A 108 YIKGERIT 115 (320)
T ss_dssp CCCCBCCC
T ss_pred ecCCcccc
Confidence 99998875
No 434
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=83.99 E-value=2.5 Score=44.04 Aligned_cols=74 Identities=8% Similarity=0.081 Sum_probs=55.9
Q ss_pred CCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCc--ccceeEEEEeC-CeEEEEEecCCCC
Q 004822 629 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLVGYCDEE-GEQMLVYEFMSNG 705 (728)
Q Consensus 629 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~~~~~-~~~~lV~Ey~~~G 705 (728)
.+.++.|....+|+... +|..+++|.-... ..+.+|..++..+.... +.++++++... +..|+||||+++.
T Consensus 46 i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l~G~ 119 (362)
T 3ovc_A 46 LMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRAQGV 119 (362)
T ss_dssp EEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECCCSE
T ss_pred EEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEecCCC
Confidence 45688999999999876 5788899887543 25888988988886543 45677777654 5689999999976
Q ss_pred CHH
Q 004822 706 TLR 708 (728)
Q Consensus 706 sL~ 708 (728)
.+.
T Consensus 120 ~l~ 122 (362)
T 3ovc_A 120 TLQ 122 (362)
T ss_dssp ETT
T ss_pred Ccc
Confidence 553
No 435
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=81.80 E-value=2.7 Score=42.57 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=54.1
Q ss_pred CceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCC---cccceeEEEE-eCCeEEEEEecCCCC
Q 004822 630 TQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR---NLVSLVGYCD-EEGEQMLVYEFMSNG 705 (728)
Q Consensus 630 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~---niv~l~g~~~-~~~~~~lV~Ey~~~G 705 (728)
..++.|....||+. |..++||.-.. ......+.+|.+++..+++. -+.+.++++. ..+..++||||+++.
T Consensus 25 ~~l~~G~~n~v~~v----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G~ 98 (306)
T 3tdw_A 25 ESLGEGFRNYAILV----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQGQ 98 (306)
T ss_dssp EEEEECSSEEEEEE----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCSE
T ss_pred eecCCCcceeEEEE----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCCe
Confidence 45788999999987 56678887432 22345789999999998653 3556677764 345678999999998
Q ss_pred CHHH
Q 004822 706 TLRD 709 (728)
Q Consensus 706 sL~~ 709 (728)
.+.+
T Consensus 99 ~l~~ 102 (306)
T 3tdw_A 99 ILGE 102 (306)
T ss_dssp ECHH
T ss_pred ECch
Confidence 8766
No 436
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=77.60 E-value=0.81 Score=47.56 Aligned_cols=79 Identities=4% Similarity=-0.005 Sum_probs=53.7
Q ss_pred Cce-eccCceEEEEEEeC-------CCCEEEEEEcccCC---hhcHHHHHHHHHHHhcCCC---CcccceeEEEEeC---
Q 004822 630 TQI-GQGGYGKVYKGILP-------DGTVVAVKRAQEGS---LQGEKEFLTEIQFLSRLHH---RNLVSLVGYCDEE--- 692 (728)
Q Consensus 630 ~~i-G~G~fg~Vy~~~~~-------~g~~vAvK~l~~~~---~~~~~~f~~E~~~l~~l~H---~niv~l~g~~~~~--- 692 (728)
+.| +.|....+|+.... ++..+++|.-.... ......+.+|+.++..++. -.+.++++++...
T Consensus 26 ~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~~ 105 (357)
T 3ats_A 26 SGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDVL 105 (357)
T ss_dssp EEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTTT
T ss_pred EECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCcc
Confidence 456 78889999988764 26678888765432 1012356788888887742 3466788887554
Q ss_pred CeEEEEEecCCCCCHH
Q 004822 693 GEQMLVYEFMSNGTLR 708 (728)
Q Consensus 693 ~~~~lV~Ey~~~GsL~ 708 (728)
+..++||||+++..+.
T Consensus 106 g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 106 GTPFFLMDYVEGVVPP 121 (357)
T ss_dssp SSCEEEEECCCCBCCC
T ss_pred CCceEEEEecCCCChh
Confidence 3568999999986654
No 437
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=67.80 E-value=6.6 Score=39.95 Aligned_cols=72 Identities=22% Similarity=0.292 Sum_probs=40.6
Q ss_pred ceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcC-----CCCccccee-E--EEEeCCeEEEEEecC
Q 004822 631 QIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRL-----HHRNLVSLV-G--YCDEEGEQMLVYEFM 702 (728)
Q Consensus 631 ~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l-----~H~niv~l~-g--~~~~~~~~~lV~Ey~ 702 (728)
.++.|..+.||+...++| .+++|+.... ..+...|.+++..+ ..|.++.-. | +....+..++||||+
T Consensus 39 ~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~i 113 (346)
T 2q83_A 39 VIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDWI 113 (346)
T ss_dssp ECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEECC
T ss_pred eccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEee
Confidence 455667889999987655 5889988752 12333444444433 234444311 1 123466789999999
Q ss_pred CCCCH
Q 004822 703 SNGTL 707 (728)
Q Consensus 703 ~~GsL 707 (728)
++..+
T Consensus 114 ~G~~~ 118 (346)
T 2q83_A 114 EGRPF 118 (346)
T ss_dssp CCBCC
T ss_pred cCccC
Confidence 98643
No 438
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=67.48 E-value=6.8 Score=26.74 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=14.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHH
Q 004822 560 AALAGIILGAIAGAVTISAIVS 581 (728)
Q Consensus 560 ~~~~~i~~~~~~~~~~~~~~~~ 581 (728)
....+|+.|+++++++++++..
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~ 28 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGL 28 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEeehHHHHHHHHHHH
Confidence 4667777777777777655543
No 439
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=66.05 E-value=3.1 Score=42.01 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=50.5
Q ss_pred CCceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC-CCc--ccceeEEEEeCC---eEEEEEecC
Q 004822 629 STQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH-HRN--LVSLVGYCDEEG---EQMLVYEFM 702 (728)
Q Consensus 629 ~~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~-H~n--iv~l~g~~~~~~---~~~lV~Ey~ 702 (728)
.+.++.|....||+.. ..+++|.-... .....+.+|.+++..+. +.. +.+.+++....+ ..|+||||+
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 3568999999999853 45888886432 23457889999998873 333 334444433322 348999999
Q ss_pred CCCCHHH
Q 004822 703 SNGTLRD 709 (728)
Q Consensus 703 ~~GsL~~ 709 (728)
++..+.+
T Consensus 99 ~G~~l~~ 105 (304)
T 3sg8_A 99 KGVPLTP 105 (304)
T ss_dssp CCEECCH
T ss_pred CCeECCc
Confidence 9987764
No 440
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=64.17 E-value=4.1 Score=27.34 Aligned_cols=9 Identities=44% Similarity=0.582 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 004822 566 ILGAIAGAV 574 (728)
Q Consensus 566 ~~~~~~~~~ 574 (728)
+++++++.+
T Consensus 16 ~~~vv~Gv~ 24 (41)
T 2k9y_A 16 IGGVAVGVV 24 (41)
T ss_dssp HHHHHHHHH
T ss_pred EeehhHHHH
Confidence 333333333
No 441
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=63.96 E-value=5.5 Score=27.26 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=12.0
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 004822 560 AALAGIILGAIAGAVTISAIV 580 (728)
Q Consensus 560 ~~~~~i~~~~~~~~~~~~~~~ 580 (728)
....+|++|++++++++++++
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~ 28 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVA 28 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHH
T ss_pred CCcceEEeehhHHHHHHHHHH
Confidence 455666666666666654443
No 442
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=60.68 E-value=8.9 Score=24.41 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=14.9
Q ss_pred CcchhhhHHHHHHHHHHHHHHHH
Q 004822 558 SKAALAGIILGAIAGAVTISAIV 580 (728)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~~~~~ 580 (728)
+.+.+++++++.+++.+++++.+
T Consensus 5 ~~gaIaGIVvgdi~~t~~i~~~v 27 (33)
T 2l34_A 5 SPGVLAGIVVGDLVLTVLIALAV 27 (33)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcceEEeEeHHHHHHHHHHHHHH
Confidence 45678888888776655444333
No 443
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=55.08 E-value=26 Score=35.19 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=47.6
Q ss_pred ceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCC--cccceeEE-----EEeCCeEEEEEecCC
Q 004822 631 QIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHR--NLVSLVGY-----CDEEGEQMLVYEFMS 703 (728)
Q Consensus 631 ~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~--niv~l~g~-----~~~~~~~~lV~Ey~~ 703 (728)
.++ |....||+....+|+.+++|....... ...++..|..++..++.. .+.+++.. ....+..++||||++
T Consensus 33 ~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~~-~~~~~~~E~~~~~~L~~~g~~vp~~~~~~g~~~~~~~g~~~~l~~~i~ 110 (328)
T 1zyl_A 33 PLN-SYENRVYQFQDEDRRRFVVKFYRPERW-TADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVG 110 (328)
T ss_dssp EEC-CSSSEEEEECCTTCCCEEEEEECTTTS-CHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCC
T ss_pred eec-CcccceEEEEcCCCCEEEEEEcCCCCC-CHHHHHHHHHHHHHHHHcCCeecceeecCCcEEEEECCEEEEEEEecC
Confidence 355 777899998877787899999864321 234566777777666321 23444432 223456788999998
Q ss_pred CCC
Q 004822 704 NGT 706 (728)
Q Consensus 704 ~Gs 706 (728)
+..
T Consensus 111 G~~ 113 (328)
T 1zyl_A 111 GRQ 113 (328)
T ss_dssp CEE
T ss_pred CCC
Confidence 743
No 444
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=50.84 E-value=14 Score=27.31 Aligned_cols=18 Identities=28% Similarity=0.538 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004822 565 IILGAIAGAVTISAIVSL 582 (728)
Q Consensus 565 i~~~~~~~~~~~~~~~~~ 582 (728)
|++|.++++++++.+.++
T Consensus 12 ivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 566666665555555554
No 445
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=45.70 E-value=7.1 Score=25.16 Aligned_cols=7 Identities=14% Similarity=0.638 Sum_probs=2.6
Q ss_pred hhhHHHH
Q 004822 562 LAGIILG 568 (728)
Q Consensus 562 ~~~i~~~ 568 (728)
+++.++|
T Consensus 10 IaagVvg 16 (35)
T 1iij_A 10 IIATVVG 16 (35)
T ss_dssp HHHHHHH
T ss_pred eHHHHHH
Confidence 3333333
No 446
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=45.00 E-value=27 Score=36.78 Aligned_cols=72 Identities=10% Similarity=0.133 Sum_probs=44.8
Q ss_pred CceeccCceEEEEEEeCCCCEEEEEEcccC-----C--h--hcHHHHHHHHHHHh-cCCCCcccceeEEEEeCCeEEEEE
Q 004822 630 TQIGQGGYGKVYKGILPDGTVVAVKRAQEG-----S--L--QGEKEFLTEIQFLS-RLHHRNLVSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 630 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~-----~--~--~~~~~f~~E~~~l~-~l~H~niv~l~g~~~~~~~~~lV~ 699 (728)
+.+|.|....||+... ++..++||..... . . .....+..|+..+. ...+..+.+++++. .+..++||
T Consensus 40 ~~l~~G~~n~vyrv~~-~~~~~vvK~~~p~~~~~~~~~~~~~~~~~~E~e~l~~~~~~~~~~vP~v~~~~--~~~~~lv~ 116 (420)
T 2pyw_A 40 KEVGDGNLNFVFIVVG-SSGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFD--RTMALIGM 116 (420)
T ss_dssp EECCCSSSCEEEEEEC-SSCEEEEEECCSBCTTTCTTSBCCTTHHHHHHHHHHHHHHHSGGGSCCEEEEE--TTTTEEEE
T ss_pred EEccCCCcEEEEEEEc-CCceEEEEECchhhcccCcccccchhHHHHHHHHHHHHHhhCCCCCCeEEEEC--CCccEEEE
Confidence 5678899999999965 4678999943211 0 0 12234445543332 22334566666665 56679999
Q ss_pred ecC-CC
Q 004822 700 EFM-SN 704 (728)
Q Consensus 700 Ey~-~~ 704 (728)
||+ ++
T Consensus 117 e~l~~g 122 (420)
T 2pyw_A 117 RYLEPP 122 (420)
T ss_dssp CCCCTT
T ss_pred eecCCc
Confidence 999 76
No 447
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=43.54 E-value=53 Score=21.50 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=12.2
Q ss_pred chhhhHHHHHHHHHHHHHHHH
Q 004822 560 AALAGIILGAIAGAVTISAIV 580 (728)
Q Consensus 560 ~~~~~i~~~~~~~~~~~~~~~ 580 (728)
..++.++.+++++.+-..+++
T Consensus 10 p~i~lII~~vmaGiIG~IllI 30 (40)
T 1afo_A 10 PEITLIIFGVMAGVIGTILLI 30 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 466777777766654433333
No 448
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=42.42 E-value=28 Score=36.97 Aligned_cols=71 Identities=18% Similarity=0.251 Sum_probs=47.9
Q ss_pred CceeccCceEEEEEEeCC--------CCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcc-cceeEEEEeCCeEEEEEe
Q 004822 630 TQIGQGGYGKVYKGILPD--------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 630 ~~iG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~ni-v~l~g~~~~~~~~~lV~E 700 (728)
+.|+.|....+|+...++ +..+.+|+.... .....+.+|..++..+...++ .++++.+. + .+|||
T Consensus 79 ~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~v~e 152 (429)
T 1nw1_A 79 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLEE 152 (429)
T ss_dssp EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEEC
T ss_pred EEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CEEEE
Confidence 457788889999998753 467888887432 112456689888888743344 56666542 2 38999
Q ss_pred cCCCCC
Q 004822 701 FMSNGT 706 (728)
Q Consensus 701 y~~~Gs 706 (728)
|+++-.
T Consensus 153 ~l~G~~ 158 (429)
T 1nw1_A 153 YIPSRP 158 (429)
T ss_dssp CCCEEE
T ss_pred EeCCcc
Confidence 998533
No 449
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.76 E-value=28 Score=27.13 Aligned_cols=9 Identities=11% Similarity=0.394 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 004822 564 GIILGAIAG 572 (728)
Q Consensus 564 ~i~~~~~~~ 572 (728)
+|+.|++++
T Consensus 12 ~Iv~gvi~g 20 (79)
T 2knc_B 12 VVLLSVMGA 20 (79)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 334444333
No 450
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=41.39 E-value=48 Score=21.76 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=16.3
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHH
Q 004822 558 SKAALAGIILGAIAGAVTISAIVSLLIV 585 (728)
Q Consensus 558 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 585 (728)
+...-.+.++|++++.++.++++....+
T Consensus 5 ~~~ls~GaIAGiVvG~v~gv~li~~l~~ 32 (38)
T 2k1k_A 5 SRGLTGGEIVAVIFGLLLGAALLLGILV 32 (38)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceeeeehHHHHHHHHHHHHHH
Confidence 4455667777777776655554444433
No 451
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=37.59 E-value=48 Score=33.07 Aligned_cols=74 Identities=7% Similarity=0.031 Sum_probs=41.6
Q ss_pred CceeccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCc--ccceeEE------EEeCCeEEEEEec
Q 004822 630 TQIGQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRN--LVSLVGY------CDEEGEQMLVYEF 701 (728)
Q Consensus 630 ~~iG~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~n--iv~l~g~------~~~~~~~~lV~Ey 701 (728)
+.|+.|....+|+....+| .+++|...... ...++..|++++..++... +.+++.. ....+..++||||
T Consensus 28 ~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~~~~g~~~~~~~g~~~~l~~~ 104 (322)
T 2ppq_A 28 KGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISF 104 (322)
T ss_dssp EEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCCBTTCCSCEEETTEEEEEEEC
T ss_pred eccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccCCCCCCEEEEECCEEEEEEEe
Confidence 3466788889999987666 57888876521 1124556666666553212 2233311 1224567899999
Q ss_pred CCCCC
Q 004822 702 MSNGT 706 (728)
Q Consensus 702 ~~~Gs 706 (728)
+++..
T Consensus 105 l~G~~ 109 (322)
T 2ppq_A 105 LEGMW 109 (322)
T ss_dssp CCCBC
T ss_pred CCCcC
Confidence 99754
No 452
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=34.62 E-value=83 Score=31.52 Aligned_cols=78 Identities=8% Similarity=0.091 Sum_probs=41.6
Q ss_pred ceeccCceE-EEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCCC--CcccceeEEEEeCCeEEEEEecCCCCCH
Q 004822 631 QIGQGGYGK-VYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHH--RNLVSLVGYCDEEGEQMLVYEFMSNGTL 707 (728)
Q Consensus 631 ~iG~G~fg~-Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H--~niv~l~g~~~~~~~~~lV~Ey~~~GsL 707 (728)
.++.|.... +|+....+|..+.+|....... .++..|+.++..+.. -.+.+++.++...+ ++|||++++..+
T Consensus 25 ~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~---~~~~~e~~~l~~L~~~g~~vP~v~~~d~~~g--~ll~e~l~~~~l 99 (333)
T 3csv_A 25 PLAGDASSRRYQRLRSPTGAKAVLMDWSPEEG---GDTQPFVDLAQYLRNLDISAPEIYAEEHARG--LLLIEDLGDALF 99 (333)
T ss_dssp C--------CCEEEECTTCCEEEEEECCTTTT---CCSHHHHHHHHHHHHTTCBCCCEEEEETTTT--EEEECCCCSCBH
T ss_pred ECCCCCCCceEEEEEcCCCCeEEEEECCCCCC---ccccHHHHHHHHHHhCCCCCCceeeecCCCC--EEEEeeCCCcch
Confidence 355554444 6676654467777776544321 123445555555532 23456666643333 789999988888
Q ss_pred HHHHhc
Q 004822 708 RDQLSG 713 (728)
Q Consensus 708 ~~~L~~ 713 (728)
.+++.+
T Consensus 100 ~~~l~~ 105 (333)
T 3csv_A 100 TEVINN 105 (333)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 887764
No 453
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.08 E-value=55 Score=22.29 Aligned_cols=31 Identities=10% Similarity=0.176 Sum_probs=17.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 004822 561 ALAGIILGAIAGAVTISAIVSLLIVRAHMKN 591 (728)
Q Consensus 561 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (728)
.-...+++.++++++++++...+..+.|+++
T Consensus 9 ~~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 9 SPLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 3444566677885544444555666665553
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=32.77 E-value=79 Score=25.66 Aligned_cols=14 Identities=0% Similarity=-0.016 Sum_probs=5.8
Q ss_pred ccccCCCCCcEEec
Q 004822 124 KEIGNIKSLELLLL 137 (728)
Q Consensus 124 ~~~~~l~~L~~L~L 137 (728)
.+|.++++|+.+.+
T Consensus 14 ~aF~~c~~L~~i~i 27 (100)
T 2lz0_A 14 SLFAGNTVIREITV 27 (100)
T ss_dssp CTTTTCTTCCCEEE
T ss_pred HHhcCCCCCcEEEc
Confidence 33444444444444
No 455
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=29.56 E-value=52 Score=34.18 Aligned_cols=73 Identities=21% Similarity=0.258 Sum_probs=42.8
Q ss_pred CceeccCceEEEEEEeCC--------CCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcc-cceeEEEEeCCeEEEEEe
Q 004822 630 TQIGQGGYGKVYKGILPD--------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQMLVYE 700 (728)
Q Consensus 630 ~~iG~G~fg~Vy~~~~~~--------g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~ni-v~l~g~~~~~~~~~lV~E 700 (728)
+.+..|....+|+...++ +..+.+|+-... .....+..+|.++++.+.-..+ .++++++. + .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~~-~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~--~--g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGAI-LQGVDSLVLESVMFAILAERSLGPQLYGVFP--E--GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEET--T--EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCCc-cchHHHHHHHHHHHHHHHhcCCCCeEEEEcC--C--ccEEE
Confidence 345667778889988652 468888885332 1234466789998887743333 46666553 3 28999
Q ss_pred cCCCCCH
Q 004822 701 FMSNGTL 707 (728)
Q Consensus 701 y~~~GsL 707 (728)
|+++..|
T Consensus 131 ~i~G~~l 137 (379)
T 3feg_A 131 YIPSRPL 137 (379)
T ss_dssp CCSEEEC
T ss_pred EecCccC
Confidence 9997544
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.94 E-value=1.3e+02 Score=24.25 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=20.8
Q ss_pred CccccCCCCCCEEEccCCCCccCCCccccCCCCCcEEeccC
Q 004822 99 SPEIGRLSYLTILDFMWNKISGSIPKEIGNIKSLELLLLNG 139 (728)
Q Consensus 99 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 139 (728)
...|.+++.|+.+.+-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 345555566666655443 3334444555555555555543
No 457
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=24.32 E-value=1.5e+02 Score=29.88 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=41.0
Q ss_pred eccCceEEEEEEeCCCCEEEEEEcccCChhcHHHHHHHHHHHhcCC---CCcccceeEE------EEeCCeEEEEEecCC
Q 004822 633 GQGGYGKVYKGILPDGTVVAVKRAQEGSLQGEKEFLTEIQFLSRLH---HRNLVSLVGY------CDEEGEQMLVYEFMS 703 (728)
Q Consensus 633 G~G~fg~Vy~~~~~~g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~---H~niv~l~g~------~~~~~~~~lV~Ey~~ 703 (728)
|.|....||+....+| .+++|+....... +|+.++..+. -+.+.+.+.. ....+..++||||++
T Consensus 32 G~g~~N~vy~v~~~~g-~~vLK~~~~~~~~------~E~~~l~~L~~~g~~~vp~pi~~~~G~~~~~~~g~~~~l~~~i~ 104 (339)
T 3i1a_A 32 GADTNAFAYQADSESK-SYFIKLKYGYHDE------INLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKHFKIIAYPFIH 104 (339)
T ss_dssp TSCSSCEEEEEECSSC-EEEEEEEECSSCC------HHHHHHHHHHHTTCCSSCCCCCCTTSCSSEECSSEEEEEEECCC
T ss_pred cCccccceEEEEeCCC-CEEEEEecCccch------HHHHHHHHHHhcCCcccccceecCCCCEEEEECCEEEEEEeccC
Confidence 3344678999987777 8999987654322 3444443331 1223344322 233567899999999
Q ss_pred CCCH
Q 004822 704 NGTL 707 (728)
Q Consensus 704 ~GsL 707 (728)
+..+
T Consensus 105 G~~~ 108 (339)
T 3i1a_A 105 APNG 108 (339)
T ss_dssp CCBT
T ss_pred CCcC
Confidence 8755
No 458
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=20.53 E-value=68 Score=32.81 Aligned_cols=72 Identities=13% Similarity=0.100 Sum_probs=41.7
Q ss_pred CceeccCceEEEEEEeCC---------CCEEEEEEcccCChhcHHHHHHHHHHHhcCCCCcc-cceeEEEEeCCeEEEEE
Q 004822 630 TQIGQGGYGKVYKGILPD---------GTVVAVKRAQEGSLQGEKEFLTEIQFLSRLHHRNL-VSLVGYCDEEGEQMLVY 699 (728)
Q Consensus 630 ~~iG~G~fg~Vy~~~~~~---------g~~vAvK~l~~~~~~~~~~f~~E~~~l~~l~H~ni-v~l~g~~~~~~~~~lV~ 699 (728)
..++.|....+|+....+ +..+.+|........ ..+...|.+++..+....+ .++++.. . -++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~~-~~~~~~E~~~l~~L~~~g~~P~~~~~~--~--~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVDE-LYNTISEFEVYKTMSKYKIAPQLLNTF--N--GGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGGG-TSCHHHHHHHHHHHHHTTSSCCEEEEE--T--TEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCccc-eecHHHHHHHHHHHHhcCCCCceEEec--C--CcEEE
Confidence 346778888999988654 267888876543211 1123567777777643343 3666543 2 36899
Q ss_pred ecCCCCC
Q 004822 700 EFMSNGT 706 (728)
Q Consensus 700 Ey~~~Gs 706 (728)
||+++-.
T Consensus 114 e~i~G~~ 120 (369)
T 3c5i_A 114 EWLYGDP 120 (369)
T ss_dssp ECCCSEE
T ss_pred EEecCCc
Confidence 9998743
No 459
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=20.09 E-value=1.4e+02 Score=21.23 Aligned_cols=13 Identities=15% Similarity=0.434 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 004822 569 AIAGAVTISAIVS 581 (728)
Q Consensus 569 ~~~~~~~~~~~~~ 581 (728)
+++++++++++++
T Consensus 19 vl~GLllL~li~~ 31 (54)
T 2knc_A 19 VLGGLLLLTILVL 31 (54)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
Done!