BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004823
(728 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RDY|A Chain A, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
pdb|2RDY|B Chain B, Crystal Structure Of A Putative Glycoside Hydrolase Family
Protein From Bacillus Halodurans
Length = 803
Score = 521 bits (1341), Expect = e-148, Method: Compositional matrix adjust.
Identities = 286/678 (42%), Positives = 389/678 (57%), Gaps = 38/678 (5%)
Query: 20 YQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVT 79
Y GD+ + D H + Y RELDL+T V Y++G V++TRE F + PD+ IV
Sbjct: 92 YLPFGDLNIFXD--HGQVVAPHYHRELDLSTGIVTVTYTIGGVQYTRELFVTYPDRAIVV 149
Query: 80 KISGSESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCP--------GKRIPPKANANDD 131
+++ S+ G LSF LDSLL + S V G + G P + P + D
Sbjct: 150 RLTASKEGFLSFRAKLDSLLRHVSSV-GAEHYTISGTAPEHVSPSYYDEENPVRYGHPDX 208
Query: 132 PKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKD 191
+G F L + + G ++ L V G+ A L AS+SFD P S ++D
Sbjct: 209 SQGXTFHGRL---AAVNEGGSLKVDADGLHVXGATCATLYFSASTSFD-PSTGASCLERD 264
Query: 192 PTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRS--PKDIVTDTCSEENIDT 249
P+ ++ +++I Y ++ RHL+DY KLF+RVS+ L S P D TD
Sbjct: 265 PSLRTIETIKAICKRGYKEIVNRHLEDYTKLFNRVSLHLGESIAPADXSTD--------- 315
Query: 250 VPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPH 309
+R+K + + D LVELLFQ+GRYL I+SSRPGTQ ANLQGIWNE+ W S
Sbjct: 316 ----QRIKEYGS-RDLGLVELLFQYGRYLXIASSRPGTQPANLQGIWNEETRAPWSSNYT 370
Query: 310 VNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKS 369
+NIN E NYW + CNL+E +PL F+ L+ NG KTA++NY A GWV HH D+W ++
Sbjct: 371 LNINAEXNYWPAETCNLAELHKPLIHFIERLAANGKKTAEINYGARGWVAHHNADLWGQT 430
Query: 370 SA----DRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 425
+ G VWA WP GG WL HLWEHY + D +L AYP+ + A F LDWLI
Sbjct: 431 APVGDFGHGDPVWAFWPXGGVWLTQHLWEHYTFGEDEAYLRDTAYPIXKEAALFCLDWLI 490
Query: 426 EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDA 485
E GYL T+PSTSPE F + K VS ++T D+++I E F I AA+ L +ED
Sbjct: 491 ENEAGYLVTSPSTSPEQRFRIGE-KGYAVSSATTXDLSLIAECFDNCIQAAKRLSIDED- 548
Query: 486 LVEKVLKSLPRLRPTKIAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL 545
V+ + + RL P +I + G + EW+ DF+D +VHHRH+SHL G++PG IT + P+L
Sbjct: 549 FVKALSDAKQRLLPLQIGKRGQLQEWSNDFEDEDVHHRHVSHLVGIYPGRLITEQSAPNL 608
Query: 546 CKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLY 605
+AA+ +L+ RG+EG GWS+ WK +LWAR D R++ L+ + GG+Y
Sbjct: 609 FEAAKTSLEIRGDEGTGWSLGWKISLWARFKDGNRCERLLSNXLTLIKEDESXQHRGGVY 668
Query: 606 SNLFAAHPPFQIDANFGFTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGET 665
+NLF AHPPFQID NF TA +AE L+QS L LPALP D W G VKGL+ RGG
Sbjct: 669 ANLFGAHPPFQIDGNFSATAGIAEXLLQSHQGYLEFLPALP-DSWKDGYVKGLRGRGGYE 727
Query: 666 VSICWKDGDLHEVGIYSN 683
V + W +G L +V I S
Sbjct: 728 VDLAWTNGALVKVEIVST 745
>pdb|2EAB|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAB|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum (Apo Form)
pdb|2EAC|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
pdb|2EAC|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With
Deoxyfuconojirimycin
Length = 899
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 220/784 (28%), Positives = 360/784 (45%), Gaps = 129/784 (16%)
Query: 24 GDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISG 83
GDI L++ + E YRR+L+L+ A V + V +TRE+F+SNPD V+V +++
Sbjct: 140 GDIYLDYGFNDTTVTE--YRRDLNLSKGKADVTFKHDGVTYTREYFASNPDNVMVARLTA 197
Query: 84 SESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEI 143
S++G L+FNVS+ + N +Y ++G + K ++ G+ +++ +++
Sbjct: 198 SKAGKLNFNVSMPT---NTNYSKTGETTTVKGDT----LTVKGALGNN--GLLYNSQIKV 248
Query: 144 KISDDRGTISALED-KKLKVEGSDWAVLLLVASSSFDG--PFINPSDSKKDPTSESMSAL 200
+ + GT+S D LKV + L + A++ + P ++ + + +
Sbjct: 249 VLDNGEGTLSEGSDGASLKVSDAKAVTLYIAAATDYKQKYPSYRTGETAAEVNTRVAKVV 308
Query: 201 QSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQ 260
Q N Y+ + H+DD+ ++ RV I L +S + D + A + S
Sbjct: 309 QDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQSGHSSDGAVAT----DALLKAYQRGSAT 364
Query: 261 TDEDPSLVELLFQFGRYLLISSSRPGTQV-ANLQGIW------NEDLSPTWDSAPHVNIN 313
T + L L++++GRYL I SSR +Q+ +NLQGIW N + W S H+N+N
Sbjct: 365 TAQKRELETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVN 424
Query: 314 LEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA-------------SGWVIH 360
L+MNYW + N+ E EPL +++ L G TA+V A G++ H
Sbjct: 425 LQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGEGYMAH 484
Query: 361 HKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFL 420
+ + ++ + W P W+ +++E Y Y+ D L+ R Y LL+ + F
Sbjct: 485 TENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVYALLKEESHFY 542
Query: 421 LDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIIS-- 474
+++++ L T + SPE + DG +Y S++ ++ + A +
Sbjct: 543 VNYMLHKAGSSSGDRLTTGVAYSPEQGPLGTDGN----TYESSLVWQMLNDAIEAAKAKG 598
Query: 475 ------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAEDGSIMEWAQD 514
+A+ KN+ DA + KSL L+P ++ + G I EW +
Sbjct: 599 DPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGDSGQIKEWYFE 656
Query: 515 F-----KDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEG- 560
KD HRH+SHL GLFPG ITI+ N + AA+ +L+ R +G
Sbjct: 657 GALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKTSLRYRCFKGN 715
Query: 561 -----PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPF 615
GW+I + WAR D Y++V E + +Y+NLF H PF
Sbjct: 716 VLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFDYHAPF 764
Query: 616 QIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGCVKGLKARGGE 664
QID NFG T+ V EML+QS +N +LPALP D W+ G V GL ARG
Sbjct: 765 QIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLVARGNF 823
Query: 665 TVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLH 724
TV WK+G EV + SN +G V ++AG + + T ++
Sbjct: 824 TVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNYEVKNGDTAVN 869
Query: 725 QSIV 728
+V
Sbjct: 870 AKVV 873
>pdb|2EAD|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
pdb|2EAD|B Chain B, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complex With Substrate
Length = 899
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 219/784 (27%), Positives = 359/784 (45%), Gaps = 129/784 (16%)
Query: 24 GDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISG 83
GDI L++ + E YRR+L+L+ A V + V +TRE+F+SNPD V+V +++
Sbjct: 140 GDIYLDYGFNDTTVTE--YRRDLNLSKGKADVTFKHDGVTYTREYFASNPDNVMVARLTA 197
Query: 84 SESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEI 143
S++G L+FNVS+ + N +Y ++G + K ++ G+ +++ +++
Sbjct: 198 SKAGKLNFNVSMPT---NTNYSKTGETTTVKGDT----LTVKGALGNN--GLLYNSQIKV 248
Query: 144 KISDDRGTISALED-KKLKVEGSDWAVLLLVASSSFDG--PFINPSDSKKDPTSESMSAL 200
+ + GT+S D LKV + L + A++ + P ++ + + +
Sbjct: 249 VLDNGEGTLSEGSDGASLKVSDAKAVTLYIAAATDYKQKYPSYRTGETAAEVNTRVAKVV 308
Query: 201 QSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQ 260
Q N Y+ + H+DD+ ++ RV I L +S + D + A + S
Sbjct: 309 QDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQSGHSSDGAVAT----DALLKAYQRGSAT 364
Query: 261 TDEDPSLVELLFQFGRYLLISSSRPGTQV-ANLQGIW------NEDLSPTWDSAPHVNIN 313
T + L L++++GRYL I SSR +Q+ +NLQGIW N + W S H+N+N
Sbjct: 365 TAQKRELETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVN 424
Query: 314 LEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA-------------SGWVIH 360
L+MNYW + N+ E EPL +++ L G TA+V A G++ H
Sbjct: 425 LQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGEGYMAH 484
Query: 361 HKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFL 420
+ + ++ + W P W+ +++E Y Y+ D L+ R Y LL+ + F
Sbjct: 485 TENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVYALLKEESHFY 542
Query: 421 LDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIIS-- 474
+++++ L T + SP + DG +Y S++ ++ + A +
Sbjct: 543 VNYMLHKAGSSSGDRLTTGVAYSPAQGPLGTDGN----TYESSLVWQMLNDAIEAAKAKG 598
Query: 475 ------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAEDGSIMEWAQD 514
+A+ KN+ DA + KSL L+P ++ + G I EW +
Sbjct: 599 DPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGDSGQIKEWYFE 656
Query: 515 F-----KDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEG- 560
KD HRH+SHL GLFPG ITI+ N + AA+ +L+ R +G
Sbjct: 657 GALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKTSLRYRCFKGN 715
Query: 561 -----PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPF 615
GW+I + WAR D Y++V E + +Y+NLF H PF
Sbjct: 716 VLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFDYHAPF 764
Query: 616 QIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGCVKGLKARGGE 664
QID NFG T+ V EML+QS +N +LPALP D W+ G V GL ARG
Sbjct: 765 QIDGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLVARGNF 823
Query: 665 TVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLH 724
TV WK+G EV + SN +G V ++AG + + T ++
Sbjct: 824 TVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNYEVKNGDTAVN 869
Query: 725 QSIV 728
+V
Sbjct: 870 AKVV 873
>pdb|2EAE|A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From
Bifidobacterium Bifidum In Complexes With Products
Length = 898
Score = 266 bits (681), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 219/784 (27%), Positives = 359/784 (45%), Gaps = 129/784 (16%)
Query: 24 GDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISG 83
GDI L++ + E YRR+L+L+ A V + V +TRE+F+SNPD V+V +++
Sbjct: 139 GDIYLDYGFNDTTVTE--YRRDLNLSKGKADVTFKHDGVTYTREYFASNPDNVMVARLTA 196
Query: 84 SESGSLSFNVSLDSLLDNHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEI 143
S++G L+FNVS+ + N +Y ++G + K ++ G+ +++ +++
Sbjct: 197 SKAGKLNFNVSMPT---NTNYSKTGETTTVKGDT----LTVKGALGNN--GLLYNSQIKV 247
Query: 144 KISDDRGTISALED-KKLKVEGSDWAVLLLVASSSFDG--PFINPSDSKKDPTSESMSAL 200
+ + GT+S D LKV + L + A++ + P ++ + + +
Sbjct: 248 VLDNGEGTLSEGSDGASLKVSDAKAVTLYIAAATDYKQKYPSYRTGETAAEVNTRVAKVV 307
Query: 201 QSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQ 260
Q N Y+ + H+DD+ ++ RV I L +S + D + A + S
Sbjct: 308 QDAANKGYTAVKKAHIDDHSAIYDRVKIDLGQSGHSSDGAVAT----DALLKAYQRGSAT 363
Query: 261 TDEDPSLVELLFQFGRYLLISSSRPGTQV-ANLQGIW------NEDLSPTWDSAPHVNIN 313
T + L L++++GRYL I SSR +Q+ +NLQGIW N + W S H+N+N
Sbjct: 364 TAQKRELETLVYKYGRYLTIGSSRENSQLPSNLQGIWSVTAGDNAHGNTPWGSDFHMNVN 423
Query: 314 LEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA-------------SGWVIH 360
L+MNYW + N+ E EPL +++ L G TA+V A G++ H
Sbjct: 424 LQMNYWPTYSANMGELAEPLIEYVEGLVKPGRVTAKVYAGAETTNPETTPIGEGEGYMAH 483
Query: 361 HKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFL 420
+ + ++ + W P W+ +++E Y Y+ D L+ R Y LL+ + F
Sbjct: 484 TENTAYGWTAPGQ-SFSWGWSPAAVPWILQNVYEAYEYSGDPALLD-RVYALLKEESHFY 541
Query: 421 LDWLI----EGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIIS-- 474
+++++ L T + SPE + DG +Y S++ ++ + A +
Sbjct: 542 VNYMLHKAGSSSGDRLTTGVAYSPEQGPLGTDGN----TYESSLVWQMLNDAIEAAKAKG 597
Query: 475 ------------AAEVLEKNE-----DALVEK---VLKSLPRLRPTKIAEDGSIMEWAQD 514
+A+ KN+ DA + KSL L+P ++ + G I EW +
Sbjct: 598 DPDGLVGNTTDCSADNWAKNDSGNFTDANANRSWSCAKSL--LKPIEVGDSGQIKEWYFE 655
Query: 515 F-----KDPEV--------HHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEG- 560
KD HRH+SHL GLFPG ITI+ N + AA+ +L+ R +G
Sbjct: 656 GALGKKKDGSTISGYQADNQHRHMSHLLGLFPGDLITID-NSEYMDAAKTSLRYRCFKGN 714
Query: 561 -----PGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPF 615
GW+I + WAR D Y++V E + +Y+NLF H PF
Sbjct: 715 VLQSNTGWAIGQRINSWARTGDGNTTYQLV-----------ELQLKNAMYANLFDYHAPF 763
Query: 616 QIDANFGFTAAVAEMLVQST-----------LNDLYLLPALPWDKWSSGCVKGLKARGGE 664
QI NFG T+ V EML+QS +N +LPALP D W+ G V GL ARG
Sbjct: 764 QIAGNFGNTSGVDEMLLQSNSTFTDTAGKKYVNYTNILPALP-DAWAGGSVSGLVARGNF 822
Query: 665 TVSICWKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTFNRQLKCTNLH 724
TV WK+G EV + SN +G V ++AG + + T ++
Sbjct: 823 TVGTTWKNGKATEVRLTSN--------------KGKQAAVKITAGGAQNYEVKNGDTAVN 868
Query: 725 QSIV 728
+V
Sbjct: 869 AKVV 872
>pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal
pdb|1JCG|A Chain A, Mreb From Thermotoga Maritima, Amppnp
pdb|2WUS|A Chain A, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
pdb|2WUS|B Chain B, Bacterial Actin Mreb Assembles In Complex With Cell Shape
Protein Rodz
Length = 344
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 29 EFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREH 68
E D++ ++Y ETYR + TA RVK +GNV ++E+
Sbjct: 181 EMDEAIVQYVRETYRVAIGERTA-ERVKIEIGNVFPSKEN 219
>pdb|3FYS|A Chain A, Crystal Structure Of Degv, A Fatty Acid Binding Protein
From Bacillus Subtilis
Length = 315
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 37 YAEETYRRELDL------------NTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGS 84
+ EETYR E++L N + +G + E + D VI +S
Sbjct: 66 FREETYREEIELDWKSFYEEVKKHNELPTTSQPPIGELVALYEELGKSYDAVISIHLSSG 125
Query: 85 ESGSLSFNVSLDSLLDN 101
SG+ S + DS++DN
Sbjct: 126 ISGTFSSAAAADSMVDN 142
>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B
Bound To The Non-Classical Nls(67-94) Of Pthrp
Length = 485
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 627 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVG 679
+ E+L ++ +ND+YL P L ++GL A ++CW L E
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAA 481
>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex
pdb|1UKL|B Chain B, Crystal Structure Of Importin-Beta And Srebp-2 Complex
Length = 876
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 627 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSN 686
+ E+L ++ +ND+YL P L ++GL A ++CW L E +
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA 488
Query: 687 NDHDSFKT 694
+D + T
Sbjct: 489 DDQEEPAT 496
>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb- Domain
pdb|2Q5D|A Chain A, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|2Q5D|B Chain B, Crystal Structure Of Human Importin Beta Bound To The
Snurportin1 Ibb-Domain Second Crystal Form
pdb|3LWW|A Chain A, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
pdb|3LWW|C Chain C, Structure Of An Open And Closed Conformation Of Human
Importin Beta Bound To The Snurportin1 Ibb-Domain
Trapped In The Same Crystallographic Asymmetric Unit
Length = 876
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 627 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSN 686
+ E+L ++ +ND+YL P L ++GL A ++CW L E +
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA 488
Query: 687 NDHDSFKT 694
+D + T
Sbjct: 489 DDQEEPAT 496
>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha
pdb|1QGR|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of
Importin Alpha (Ii Crystal Form, Grown At Low Ph)
Length = 876
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 627 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSN 686
+ E+L ++ +ND+YL P L ++GL A ++CW L E +
Sbjct: 435 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA 488
Query: 687 NDHDSFKT 694
+D + T
Sbjct: 489 DDQEEPAT 496
>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In
Complex With The Ibb-Domain Of Snurportin1 (1-65)
Length = 762
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 627 VAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGGETVSICWKDGDLHEVGIYSNYSN 686
+ E+L ++ +ND+YL P L ++GL A ++CW L E +
Sbjct: 310 ICELLPEAAINDVYLAPLL------QCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA 363
Query: 687 NDHDSFKT 694
+D + T
Sbjct: 364 DDQEEPAT 371
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 42 YRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISGSESGSLSF 91
Y + L+L+++ A Y GNV +E + D +G E+G L +
Sbjct: 80 YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,598,921
Number of Sequences: 62578
Number of extensions: 1025296
Number of successful extensions: 2809
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2772
Number of HSP's gapped (non-prelim): 16
length of query: 728
length of database: 14,973,337
effective HSP length: 106
effective length of query: 622
effective length of database: 8,340,069
effective search space: 5187522918
effective search space used: 5187522918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)