Query 004823
Match_columns 728
No_of_seqs 182 out of 1226
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 13:31:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13807 maltose phosphorylase 100.0 1.2E-54 2.5E-59 508.6 59.9 568 35-714 104-756 (756)
2 COG1554 ATH1 Trehalose and mal 100.0 3.4E-54 7.5E-59 488.8 49.5 555 35-689 101-750 (772)
3 PF03632 Glyco_hydro_65m: Glyc 100.0 5.4E-40 1.2E-44 356.5 17.8 320 274-637 2-362 (370)
4 KOG4125 Acid trehalase [Carboh 99.9 1.4E-24 3.1E-29 229.0 35.7 372 195-631 209-598 (682)
5 PF14498 Glyco_hyd_65N_2: Glyc 99.9 5.6E-25 1.2E-29 227.6 20.1 156 8-180 74-235 (236)
6 TIGR01577 oligosac_amyl oligos 98.5 0.00054 1.2E-08 81.1 36.5 326 194-590 208-574 (616)
7 PF10222 DUF2152: Uncharacteri 98.1 8E-05 1.7E-09 85.9 18.4 168 45-234 136-322 (604)
8 PF05592 Bac_rhamnosid: Bacter 97.9 3.3E-05 7.2E-10 89.2 8.3 267 385-689 206-506 (509)
9 COG3459 Cellobiose phosphoryla 97.4 0.025 5.4E-07 67.4 23.8 103 386-498 672-794 (1056)
10 PF04685 DUF608: Protein of un 97.1 0.00051 1.1E-08 75.8 4.9 168 318-498 23-203 (365)
11 TIGR01535 glucan_glucosid gluc 96.9 0.84 1.8E-05 54.2 29.0 223 194-497 210-438 (648)
12 PF06202 GDE_C: Amylo-alpha-1, 96.8 0.059 1.3E-06 59.8 17.8 282 322-631 44-369 (370)
13 COG3387 SGA1 Glucoamylase and 96.7 0.09 2E-06 62.0 19.7 321 204-590 213-565 (612)
14 COG3408 GDB1 Glycogen debranch 96.7 0.17 3.7E-06 59.9 21.5 293 323-663 298-636 (641)
15 TIGR01561 gde_arch glycogen de 96.0 4.5 9.7E-05 47.6 32.3 94 384-482 349-449 (575)
16 PF03633 Glyco_hydro_65C: Glyc 96.0 0.013 2.9E-07 46.1 5.1 41 643-689 1-42 (54)
17 PF03636 Glyco_hydro_65N: Glyc 95.5 0.27 5.9E-06 51.6 14.2 61 36-98 93-163 (255)
18 PRK10137 alpha-glucosidase; Pr 94.9 12 0.00026 45.4 35.2 45 387-432 421-465 (786)
19 PRK13271 treA trehalase; Provi 91.9 5.9 0.00013 46.4 17.0 35 387-423 214-248 (569)
20 COG4354 Predicted bile acid be 90.0 1.4 3E-05 50.3 9.2 192 268-481 323-531 (721)
21 PRK13272 treA trehalase; Provi 85.9 33 0.00071 40.1 17.2 36 386-423 214-249 (542)
22 PLN02567 alpha,alpha-trehalase 75.6 5 0.00011 47.0 6.1 36 386-422 206-241 (554)
23 PRK13270 treF trehalase; Provi 70.9 2.2E+02 0.0048 33.5 19.5 80 314-422 170-258 (549)
24 PF01204 Trehalase: Trehalase; 65.9 5.3 0.00012 46.4 3.5 35 387-422 183-217 (512)
25 KOG0602 Neutral trehalase [Car 52.6 25 0.00055 41.1 5.9 41 387-428 240-280 (600)
26 TIGR01531 glyc_debranch glycog 49.4 2.8E+02 0.006 36.2 14.4 38 385-422 1093-1152(1464)
27 PF12439 GDE_N: Glycogen debra 40.5 1.6E+02 0.0035 30.2 9.1 52 42-94 75-127 (223)
28 KOG2119 Predicted bile acid be 39.7 54 0.0012 39.0 5.9 84 389-482 563-647 (879)
29 COG3537 Putative alpha-1,2-man 36.6 2.1E+02 0.0046 34.0 9.9 142 156-350 252-397 (768)
30 KOG3778 Uncharacterized conser 31.9 2.5E+02 0.0053 31.9 9.0 27 206-233 288-314 (603)
31 PF06627 DUF1153: Protein of u 31.1 45 0.00098 29.1 2.7 67 429-496 8-75 (90)
32 cd07430 GH15_N Glycoside hydro 30.8 6.6E+02 0.014 26.5 13.8 46 51-96 83-132 (260)
33 PF11344 DUF3146: Protein of u 27.7 1.2E+02 0.0026 25.8 4.4 64 648-718 12-79 (80)
34 TIGR02564 cas_Csy1 CRISPR-asso 26.5 3.5E+02 0.0077 30.2 9.3 20 634-654 217-236 (384)
35 PF13428 TPR_14: Tetratricopep 24.9 1.1E+02 0.0024 22.3 3.6 23 568-590 7-29 (44)
36 TIGR00756 PPR pentatricopeptid 24.6 1.5E+02 0.0033 19.4 4.1 22 569-590 7-28 (35)
37 PF07470 Glyco_hydro_88: Glyco 24.3 3.2E+02 0.0069 29.6 8.6 88 335-432 144-234 (336)
38 PF00515 TPR_1: Tetratricopept 23.1 1.4E+02 0.003 20.0 3.7 24 567-590 6-29 (34)
39 PF12518 DUF3721: Protein of u 22.8 69 0.0015 22.9 1.9 24 341-367 4-27 (34)
40 PRK09744 DNA-binding transcrip 20.4 42 0.00091 28.3 0.5 42 467-509 8-51 (75)
No 1
>PRK13807 maltose phosphorylase; Provisional
Probab=100.00 E-value=1.2e-54 Score=508.57 Aligned_cols=568 Identities=16% Similarity=0.162 Sum_probs=389.7
Q ss_pred CCCCCCCeEEEEeccccEEEEEEE--ECC--EEEEEEEEEecCCC-EEEEEE--EcC-CCCceEEEEEeccCCCCC-e--
Q 004823 35 LKYAEETYRRELDLNTATARVKYS--VGN--VEFTREHFSSNPDQ-VIVTKI--SGS-ESGSLSFNVSLDSLLDNH-S-- 103 (728)
Q Consensus 35 ~~~~~~~Y~R~LDl~~gv~~v~~~--~~g--~~~~re~f~S~pd~-viv~~i--~~~-~~~~l~~~~~l~~~~~~~-~-- 103 (728)
..+. +|+|+|||.+|+.+.++. .+| ++++-+.|||..+. ++++++ +.. ..+.+.+.-.++...... .
T Consensus 104 ~~i~--~~~r~LDl~~G~l~r~~~~~~~G~~~~i~~~Rfvs~~~~~l~~~~~~i~~~n~~~~i~i~s~idg~v~n~~~~~ 181 (756)
T PRK13807 104 CEVS--DFELELDMKEGVLTRSFTVLKNGKEVRVEAERFLSIAQKELAVIKYSVTSLNGEAKITFDSYLDGDVKNEDSNY 181 (756)
T ss_pred Cchh--eeEEEEEccceEEEEEEEEEECCeEEEEEEEEEecCCCCEEEEEEEEEEEcCCcEEEEEEecccCccccCCcch
Confidence 4566 899999999999986654 345 56778899999874 666555 443 245666665554432110 0
Q ss_pred ------eee---cCCeEEEEEecCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCce----EEEecCC------eEEEeC
Q 004823 104 ------YVN---GNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGT----ISALEDK------KLKVEG 164 (728)
Q Consensus 104 ------~~~---~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~----~~~~~~~------~l~v~~ 164 (728)
... ..+...+..+.... .......+..+.+. .+.++. +.. ... .+.++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~T~~s----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~i~~~~~~~l~~ 249 (756)
T PRK13807 182 DEKFWQVLEKGADATRAFIVTKTKPN----------PFGVPQFTVAAKMS-NRTNGKVVPGVET-KEKYVENSFTADVKA 249 (756)
T ss_pred hhhcceeecccccCCCcEEEEEEecC----------CCcceeEEEEEeee-ccccccccceeec-cCcEEEEEEEEEEcC
Confidence 000 11111111111000 00011122221111 110011 111 112 234567
Q ss_pred CcEEEE--EEEEeecCCCCCCCCCCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccC
Q 004823 165 SDWAVL--LLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTC 242 (728)
Q Consensus 165 a~~v~l--~~~~~T~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~ 242 (728)
.++++| ++++.|+.+. + ..++.+.|.+.+..+.+.+|++|+++|++.|+++|++++|+|+|++.
T Consensus 250 g~~~~leK~v~v~ts~d~--~-----~~~~~~~a~~~~~~a~~~g~d~l~~~h~~~w~~~W~~~di~I~gd~~------- 315 (756)
T PRK13807 250 GETVTLEKRVIVVTSRDY--E-----ESELLKAAEDLLNKAAEKGFEELLAAHTAAWAKRWEKSDVVIEGDDA------- 315 (756)
T ss_pred CCEEEEEEEEEEEECCCC--C-----chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHCCeEEcCCHH-------
Confidence 777766 6777777552 1 34456778888888888899999999999999999999999998653
Q ss_pred cccccCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHhcC--CCC---CCCCCCccccCCCCCCCCCCCcccccccccc
Q 004823 243 SEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSS--RPG---TQVANLQGIWNEDLSPTWDSAPHVNINLEMN 317 (728)
Q Consensus 243 ~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~~grYllisss--R~g---~~p~~LqG~W~~~~~~~W~g~y~~niN~qm~ 317 (728)
.|+.. +|..|+|.++. +.+ ..|.||+|. .+.|+ ++||+|++
T Consensus 316 ----------~q~al---------------r~~~fhL~~s~~~~~~~~~i~a~GLsge-------~Y~Gh--~FWDtE~f 361 (756)
T PRK13807 316 ----------AQQGI---------------RFNIFQLFSTYYGEDARLNIGPKGFTGE-------KYGGA--TYWDTEAY 361 (756)
T ss_pred ----------HHHHH---------------HHHHHHHHhccCCCCCCCCcCCCCCCcC-------CcCCe--eeeccchh
Confidence 45444 35556666553 222 245577773 68886 55779999
Q ss_pred cccc-cCCCchhhhHHHHHHHHHhhHHHHHHHHHHcCCCceEEcccCCcCCCCCCCCCCccccc---CccCHHHHHHHHH
Q 004823 318 YWQS-LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---WPMGGAWLCTHLW 393 (728)
Q Consensus 318 ywp~-~~~nlpE~~~pll~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~---w~~~~awla~~~w 393 (728)
..|+ +....||+++.||+||++.|+.||++|++ +|++||+|||.+. -|.. .++.|.. --.-+++||+++|
T Consensus 362 ~lP~~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A~~-~g~~GA~yPW~s~-~G~E----~~~~w~~~~~e~HI~adIaya~~ 435 (756)
T PRK13807 362 CVPFYLATADPEVTRNLLKYRYNQLPGAKENAKK-QGLKGALYPMVTF-NGIE----CHNEWEITFEEIHRNGAIAYAIY 435 (756)
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhHHHHHHHHHH-cCCCccccceEcC-CCCc----CCCCcCCCceeEechHHHHHHHH
Confidence 9998 66899999999999999999999999999 7999999998864 2311 1122211 0124799999999
Q ss_pred HHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecC-CCeEEECCCCCC-CCCcCCCCCCccccccCcHHHHHHHHHHHHH
Q 004823 394 EHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSA 471 (728)
Q Consensus 394 ~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~ 471 (728)
+||+.|||.+||++.|+|||.|+||||.+++.+++ +|+|+|..+++| |++ ..++||+|||.|++++|+.
T Consensus 436 ~Y~~~TgD~~fl~~~G~e~l~etArfw~s~~~~~~~~~~y~I~~V~GPDEY~---------~~vdNNayTN~ma~~~l~~ 506 (756)
T PRK13807 436 NYTNYTGDESYLKEEGLEVLVEIARFWADRVHFSKRKNKYMIHGVTGPNEYE---------NNVNNNWYTNYIAAWTLEY 506 (756)
T ss_pred HHHHHhCCHHHHHhcCHHHHHHHHHHHHHheEEeCCCCeEEECCcccccccC---------CCCCCchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999865 889999999999 776 3589999999999999999
Q ss_pred HHHHHHH--------hCCCchHHHHHHHHHcCCCC-CCCCCCCC---------ceeeecccCCCC----cCCCCccc---
Q 004823 472 IISAAEV--------LEKNEDALVEKVLKSLPRLR-PTKIAEDG---------SIMEWAQDFKDP----EVHHRHLS--- 526 (728)
Q Consensus 472 ~~~a~~~--------L~~~~~~~~~~w~~~~~~L~-p~~i~~~G---------~l~ew~~~~~~~----~~~hrh~s--- 526 (728)
++++++. |+++ +++.++|++++++|. |+.- ..| .+++|+.+-.+. ...|.|..
T Consensus 507 A~~~~~~l~~~~~~~l~~~-~~e~~~w~~ia~~~~lp~~~-~~gi~~q~dgy~~l~~~d~~~~~~~~~~~~~~~~~~~i~ 584 (756)
T PRK13807 507 TLENLDKVKKEAPARLNVT-EEELAKWQDIVDKMYLPYDE-ELGIFVQHDGFLDKDLRPVSDLPPDQRPINQNWSWDRIL 584 (756)
T ss_pred HHHHHHHhchhhHHHhcCC-HHHHHHHHHHHhCeEecccC-CCCEEEccCCccccccCchhhcccccCCcccccCHHHHh
Confidence 9998864 4555 667889999999999 6642 223 233443211111 11112211
Q ss_pred ---------cccccCCCCccCCCCCHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhccCCccc
Q 004823 527 ---------HLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHE 597 (728)
Q Consensus 527 ---------hL~~l~P~~~i~~~~~p~l~~aa~~tl~~r~~~~sgws~~~~~~~aARLgd~e~A~~~l~~~~~~~~~~~~ 597 (728)
-++.+||+.. .-+++.++.....+++|+.|+|++|++++++++|++|+.++|+++|++.+. +|+++.
T Consensus 585 ~~qviKQADvvll~yll~~---~f~~~~~~~n~~yYe~rT~HdSsLS~~i~ai~aa~~g~~~~A~~~f~~a~~-~Dl~~~ 660 (756)
T PRK13807 585 RSPFIKQADVLQGIYFFED---RFTKEEKRRNFDFYEPLTVHESSLSPCVHSILAAELGKEDKAVELYLRTAR-LDLDNY 660 (756)
T ss_pred cccEecHHHHHHHhccCCC---CCCHHHHHHHHHHhcCcccCCCCCCHHHHHHHHHhcCCHHHHHHHHHHHHH-hhhhhc
Confidence 1345566542 245677778888889999999999999999999999999999999999988 566543
Q ss_pred c-cCCCCcccccccCCCCccccchhhHHHHHHHHhhhccC------CeeEeCCCCCcccccCceeeceEeecc-EEEEEE
Q 004823 598 K-HFEGGLYSNLFAAHPPFQIDANFGFTAAVAEMLVQSTL------NDLYLLPALPWDKWSSGCVKGLKARGG-ETVSIC 669 (728)
Q Consensus 598 ~-~~~~g~~~nl~~~h~pfqidgn~g~~agi~emLlqs~~------g~i~llPalP~~~W~~gs~~gL~arG~-~~V~~~ 669 (728)
+ +..+| .+.++++|.+.++++... +.|+|.|.|| +.|+..+|+ ++.||. +.|.+
T Consensus 661 ~~~t~~G---------------iH~~~~gG~w~~vv~Gf~Glr~~~~~L~~~P~LP-~~w~~l~f~-~~~rG~~l~v~i- 722 (756)
T PRK13807 661 NNDTEDG---------------LHITSMAGSWLAIVQGFAGMRVRDGQLSFAPFLP-KEWTSYSFK-INFRGRLLKVKV- 722 (756)
T ss_pred cCCCCcc---------------hhhhcchHHHHHHHheecceEecCCeEEEeCCCC-CccceeEEE-EEECCeEEEEEE-
Confidence 1 11111 145777888888877554 5799999999 999999998 999998 45555
Q ss_pred EeCCeEEEEEEEeCCCCCcccceeeeeecCeEEEEEccCCcEEEE
Q 004823 670 WKDGDLHEVGIYSNYSNNDHDSFKTLHYRGTSVKVNLSAGKIYTF 714 (728)
Q Consensus 670 w~~g~l~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~i 714 (728)
...+ ++|+...|..++ +.+. + ..+.+.+|++.++
T Consensus 723 -~~~~---~~i~~~~g~~l~---i~v~--g--~~~~l~~g~~~~~ 756 (756)
T PRK13807 723 -DKQE---VTIELLSGEPLT---IEVY--G--KKVELKKGVTVTV 756 (756)
T ss_pred -ECCE---EEEEEcCCCcEE---EEEC--C--EEEEEcCCcEeeC
Confidence 4444 355555555566 4443 3 2355568887764
No 2
>COG1554 ATH1 Trehalose and maltose hydrolases (possible phosphorylases) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.4e-54 Score=488.83 Aligned_cols=555 Identities=18% Similarity=0.202 Sum_probs=375.2
Q ss_pred CCCCCCCeEEEEeccccEEEEEEEEC---C--EEEEEEEEEecCCC-EEEEE--EEcCCC-CceEEEEEeccCCCCC-ee
Q 004823 35 LKYAEETYRRELDLNTATARVKYSVG---N--VEFTREHFSSNPDQ-VIVTK--ISGSES-GSLSFNVSLDSLLDNH-SY 104 (728)
Q Consensus 35 ~~~~~~~Y~R~LDl~~gv~~v~~~~~---g--~~~~re~f~S~pd~-viv~~--i~~~~~-~~l~~~~~l~~~~~~~-~~ 104 (728)
.++. +|+|+|||++|+.+.++... | ++++-+.|||.... +++++ |++... +.+.+.-.++...... +.
T Consensus 101 ~~V~--~y~r~LDm~~G~L~r~~~~~~~~g~~i~l~seRfvs~~~~~l~ai~~~I~~~~~~~~v~i~~~iD~~~~N~~~~ 178 (772)
T COG1554 101 GEVL--SYERELDMKKGLLTRSLRWRSPAGKQITLTSERFVSLAQKHLAAIRYEITALDGDGQVLIVTIIDGNVTNTGVN 178 (772)
T ss_pred ccee--eeeEEeehhccEEEEEEEEEcCCCCEEEEEEEEEEecccceeEEEEEEEEEcCCceEEEEeecccccccCCCch
Confidence 4567 89999999999998775543 2 67889999999864 55554 555543 4444444444432111 00
Q ss_pred e-------ecCCeEEEEEecCCCCCCCCCCCCCCCCcceEEEEEEEEEeCC--CceEEEe---cCC--eEEEeCCcEEEE
Q 004823 105 V-------NGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDD--RGTISAL---EDK--KLKVEGSDWAVL 170 (728)
Q Consensus 105 ~-------~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~--~G~~~~~---~~~--~l~v~~a~~v~l 170 (728)
. ...+.+...++.. ....+ .......|++.......+. +.+.+.. .+. .+.+++..+++|
T Consensus 179 ~~e~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~q~v~l 252 (772)
T COG1554 179 YLEIFWQHLFDQEIEVQEQTV-LKTIS-----NPFSYITFAVAAESSVSGDGVQESFAAKDRRLGIEIEILLKAGQTVTL 252 (772)
T ss_pred hHhhhchhhhhhhhhhhhccc-ccccc-----ccchhhHHHHHHhhccCCCCceeeeeecccccceeEEEEecCCCeEEE
Confidence 0 0001111111100 00000 0000111111111111110 0011110 011 234456677776
Q ss_pred --EEEEeecCCCCCCCCCCCCCChHHHHHH-HHHHHHhCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccCccccc
Q 004823 171 --LLVASSSFDGPFINPSDSKKDPTSESMS-ALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENI 247 (728)
Q Consensus 171 --~~~~~T~~~~~~~~~~~~~~~~~~~~~~-~l~~a~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~~~~~~ 247 (728)
++++.|+.+- . ..+....+.+ .+..+.+.+|++|+++|++.|.++|++++|+|+||+.
T Consensus 253 eK~v~v~tS~d~--~-----~~e~~~~~~~~~~~~~~~~~y~~Ll~~h~~aW~~~W~~adI~Iegd~~------------ 313 (772)
T COG1554 253 EKYVTVFTSRDR--E-----LDELLNAALEALLKLASKGGYEKLLAAHKAAWDDLWEKADIEIEGDPE------------ 313 (772)
T ss_pred EEEEEEEecccc--c-----hhhhhhHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHhcCEEecCCHH------------
Confidence 7777787552 1 1223344343 5667778999999999999999999999999998754
Q ss_pred CCCChHHHHhhccCCCChHHHHHHHHHHHHHHHhcC-----CCCCCCCCCccccCCCCCCCCCCCccccccccccccccc
Q 004823 248 DTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSS-----RPGTQVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSL 322 (728)
Q Consensus 248 ~~~~t~~rl~~~~~~~d~~L~~l~f~~grYllisss-----R~g~~p~~LqG~W~~~~~~~W~g~y~~niN~qm~ywp~~ 322 (728)
+|+..| |++|+|.+.+ |-+..|+||+|. +|+| |.+|+||.+..|++
T Consensus 314 -----~Q~avR---------------fnLFhL~~~~~~~d~rlsIgaKGltGe-------gY~G--hvfWDTEif~lP~l 364 (772)
T COG1554 314 -----AQQAVR---------------FNLFHLLQTTPGHDERLSIGAKGLTGE-------GYGG--HVFWDTEIFVLPFL 364 (772)
T ss_pred -----HHHHHH---------------HHHHHHHhhccCcccCCCCCCCCcCcc-------ccCC--eeeecchHHhhhhh
Confidence 555544 5556665554 233466689886 7888 56788999999999
Q ss_pred CCCchhhhHHHHHHHHHhhHHHHHHHHHHcCCCceEEcccCCcCCCCCCCCCCccccc---------Ccc-----CHHHH
Q 004823 323 PCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWAL---------WPM-----GGAWL 388 (728)
Q Consensus 323 ~~nlpE~~~pll~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~---------w~~-----~~awl 388 (728)
..+.|++++.||.||++.|+.||++|++ +|++||+|||.|-.-|.. ..+.|+. |+. -+++|
T Consensus 365 ~~t~P~vArnLL~YR~~~L~~Ak~nA~~-~G~~GAlyPW~S~~~G~E----~t~~w~~~~~~~~~~~~~~~~E~Hin~dI 439 (772)
T COG1554 365 LFTDPEVARNLLLYRYNTLPGAKENAKK-YGLKGALYPWESATDGDE----CTPEWEATFERTGWRVASSDREIHINADI 439 (772)
T ss_pred hccChHHHHHHHHHHHhcCHHHHHHHHH-cCCCcccceeeecCCCCc----cCCcccccccccccccCccccceehhhHH
Confidence 9999999999999999999999999999 899999999877542321 1223322 211 27999
Q ss_pred HHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecC-CCeEEECCCCCC-CCCcCCCCCCccccccCcHHHHHHHH
Q 004823 389 CTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIR 466 (728)
Q Consensus 389 a~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r 466 (728)
|+++|.|+++|||++||++.|+|+|.|+|+||++++..+. +|+|+|..+++| |++. .++||+|||.|++
T Consensus 440 AyAv~~Y~q~TgD~~yl~~~G~evl~etArFW~srv~~~~~~~~y~I~gV~GPdEY~~---------~InNN~fTN~ma~ 510 (772)
T COG1554 440 AYAVWNYWQVTGDDSYLADCGLEVLLETARFWASRVHFSDRNGRYEIHGVTGPDEYHN---------HVNNNAFTNLMAA 510 (772)
T ss_pred HHHHHHHHhhcCcHHHHHhcCHHHHHHHHHHHHHHheecccCCeEEEecCcCchhhhc---------cccchHHHHHHHH
Confidence 9999999999999999999999999999999999999864 999999999999 7762 5889999999999
Q ss_pred HHHHHHHHHHH--------HhCCCchHHHHHHHHHcCCCC-CCCCCCCCce---------eeecccCCCCcCC--CCcc-
Q 004823 467 EVFSAIISAAE--------VLEKNEDALVEKVLKSLPRLR-PTKIAEDGSI---------MEWAQDFKDPEVH--HRHL- 525 (728)
Q Consensus 467 ~l~~~~~~a~~--------~L~~~~~~~~~~w~~~~~~L~-p~~i~~~G~l---------~ew~~~~~~~~~~--hrh~- 525 (728)
|+|+.++++++ .|++. .+++++|++|..+|. |+.. +.|.+ .++..+..++... -++.
T Consensus 511 w~L~~ale~~~~~~~~~~~~l~it-~ee~~~w~di~~~my~p~de-~~gv~~Q~dgf~~l~~~~~~~~~~~~~~~~~~~~ 588 (772)
T COG1554 511 WNLEYALEILEWLWSELREKLNVT-TEEIEKWADIAKKMYYPEDE-ELGVIAQFDGFLDLEEIDLDAYEAAAGPLSQLLS 588 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHhcCCCCCc-ccCceeeccchhhhhhCChhhcccccCcchhhhh
Confidence 99999999887 37888 889999999999999 6542 22432 2222211111111 0110
Q ss_pred -----------------ccccccCCCCccCCCCCHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 004823 526 -----------------SHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRL 588 (728)
Q Consensus 526 -----------------shL~~l~P~~~i~~~~~p~l~~aa~~tl~~r~~~~sgws~~~~~~~aARLgd~e~A~~~l~~~ 588 (728)
.+++-++|. .-+|+..+.....+++|+.|+|++|++.|++++|+||..+.||+++++.
T Consensus 589 ~~~~~~~~~q~iKQADvlm~~Yl~~~-----~F~~~~i~~N~dyY~~rTvh~SSLSp~ihaila~~lg~~~~Aye~~~~~ 663 (772)
T COG1554 589 YDRESVLRSQFIKQADVLMLLYLLPD-----LFSPETIKRNFDYYEPRTVHDSSLSPAIHAILAAELGKRDKAYEYFRRA 663 (772)
T ss_pred hcccccchhhhhhhHHHHHHHHhhhc-----cCCHHHhhccceecccccccccccchHHHHHHHhhhCcHHHHHHHHHHH
Confidence 011111110 1234444444556677899999999999999999999999999999999
Q ss_pred HhccCCcccccCCCCcccccccCCCCccccc-hhhHHHHHHHHhhhcc------CCeeEeCCCCCcccccCceeeceEee
Q 004823 589 FNLVDPEHEKHFEGGLYSNLFAAHPPFQIDA-NFGFTAAVAEMLVQST------LNDLYLLPALPWDKWSSGCVKGLKAR 661 (728)
Q Consensus 589 ~~~~~~~~~~~~~~g~~~nl~~~h~pfqidg-n~g~~agi~emLlqs~------~g~i~llPalP~~~W~~gs~~gL~ar 661 (728)
++ +|++|.. +.+ -|| +.+.++|++..++|.. +|.+.+.|.|| ++|...+|+ +.+|
T Consensus 664 a~-iDL~n~~---~~t------------~dGiHiasm~g~W~aiV~GF~Gl~~~~~~l~~~P~LP-~~W~~l~F~-~~~r 725 (772)
T COG1554 664 AR-IDLDDVN---GST------------DDGIHIASMGGIWLAIVQGFAGLRTRDGQLSLAPFLP-DAWTRLKFP-LNWR 725 (772)
T ss_pred Hh-ccccccC---CCc------------cchHhHHHHHHhHHHHHhhhcceEeeCCcEeECCCCc-ccccceEEE-EEEc
Confidence 98 6776642 111 134 4567889999998865 46899999999 999999998 9999
Q ss_pred cc-EEEEEEEeCCeEEEEEEEeCCCC-Ccc
Q 004823 662 GG-ETVSICWKDGDLHEVGIYSNYSN-NDH 689 (728)
Q Consensus 662 G~-~~V~~~w~~g~l~~~~i~s~~~~-~~~ 689 (728)
|- +.|.+. ++ .++++...++ .+.
T Consensus 726 g~~l~v~v~--~~---~v~~~~~~~~~~l~ 750 (772)
T COG1554 726 GRLLKVDVD--GA---AVTLTLEGGQTPLE 750 (772)
T ss_pred ceEEEEEec--Cc---ceEEEecCCCccee
Confidence 96 455553 32 4466666666 444
No 3
>PF03632 Glyco_hydro_65m: Glycosyl hydrolase family 65 central catalytic domain; InterPro: IPR005195 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) which contains this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The central domain is the catalytic domain, which binds a phosphate ion that is proximal the the highly conserved Glu. The arrangement of the phosphate and the glutamate is thought to cause nucelophilic attack on the anomeric carbon atom []. The catalytic domain also forms the majority of the dimerisation interface.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=100.00 E-value=5.4e-40 Score=356.48 Aligned_cols=320 Identities=18% Similarity=0.193 Sum_probs=209.7
Q ss_pred HHHHHHHhcC-CCC---C-CCCCCccccCCCCCCCCCCCcccccccccccccccCCCchhhhHHHHHHHHHhhHHHHHHH
Q 004823 274 FGRYLLISSS-RPG---T-QVANLQGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTA 348 (728)
Q Consensus 274 ~grYllisss-R~g---~-~p~~LqG~W~~~~~~~W~g~y~~niN~qm~ywp~~~~nlpE~~~pll~~~~~~l~~~r~~A 348 (728)
|+.|+|.++. +.+ + .|.||+|. .|.|++ +|++|+.+.|++....||+++.|++||.++|+.||++|
T Consensus 2 ~~lfhL~~~~~~~~~~~~i~a~GLsge-------~Y~Gh~--FWDtE~~~~P~~~~~~Pe~Ar~lL~YR~~~L~~Ar~~A 72 (370)
T PF03632_consen 2 FNLFHLLQSAPRHDSRLSIGAKGLSGE-------GYKGHV--FWDTEIFMLPFFLLTHPEAARSLLNYRYRTLPQARENA 72 (370)
T ss_dssp HHHHHHHHH--SS-TT----TTTTS-S-------TTTTSB---THHHHCHHHHHHHS-HHHHHHHHHHHHTTHHHHHHHH
T ss_pred cHHHHHHHhcCCCCCCCCcCCCCCCCC-------CcCCee--eecchHHhcchHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556665543 322 2 34478774 689965 57799999999999999999999999999999999999
Q ss_pred HHHcCCCceEEcccCCcCCCCCCCCCCcccc--cC-ccCHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhce
Q 004823 349 QVNYLASGWVIHHKTDIWAKSSADRGKVVWA--LW-PMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLI 425 (728)
Q Consensus 349 ~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~--~w-~~~~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~ 425 (728)
++ +|++||+|||++...|.... ..|. .. ..-+++||+++|+||..|||.+||+++++|||+|+|+||.++++
T Consensus 73 ~~-~g~~GA~yPWeS~~~G~E~t----~~~~~~~~e~Hi~adIa~a~~~Y~~~TgD~~~l~~~g~eil~etArfw~sr~~ 147 (370)
T PF03632_consen 73 RE-YGYKGAMYPWESARTGEECT----GPWPAGDYEIHINADIAYAIWQYYQATGDEEFLREYGAEILFETARFWASRVE 147 (370)
T ss_dssp HC-TT--S----SSBSS-SSB--------HHHHTT-THHHHHHHHHHHHHHHHH---TTTTTHHHHHHHHHHHHHHHH-E
T ss_pred HH-cCCCcceeecccccCccccC----CCCCchHhhhcchHHHHHHHHHHHHhCCcHHHHHccCHHHHHHHHHHHHHheE
Confidence 99 79999999988876553211 1111 11 12379999999999999999999999999999999999999999
Q ss_pred ecC-CCeEEECCCCCC-CCCcCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhC-----CCchHHHHHHHHHcCCCC
Q 004823 426 EGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLE-----KNEDALVEKVLKSLPRLR 498 (728)
Q Consensus 426 ~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~~~~a~~~L~-----~~~~~~~~~w~~~~~~L~ 498 (728)
+++ +|+|+|..+++| |++ ..++||+|||.|++++|+.++++++.++ ++ +++.++|++++++|.
T Consensus 148 ~~~~~g~y~i~~V~GPDEY~---------~~V~NnayTN~ma~~~L~~A~~~~~~~~~~~l~~~-~~e~~~W~~ia~~i~ 217 (370)
T PF03632_consen 148 YNEDTGRYEIRNVTGPDEYH---------ENVDNNAYTNAMAKWNLRLAAEAAERLGEEKLGLT-EEEPEKWKEIADKIY 217 (370)
T ss_dssp EETTTTEEE--SB--SSTTS----------SBS--HHHHHHHHHHHHHHHHHHTTS-HHHHT---HHHHHHHHHHHHTB-
T ss_pred EcCCCCeEEecccCchhccc---------CCCCCcHHHHHHHHHHHHHHHHHHHHCchhhcCCC-HHHHHHHHHHHhcCC
Confidence 988 599999999999 665 3589999999999999999999987654 55 668899999999999
Q ss_pred -CCCCCCCCce---------eeecccCCCCc---CCCCccc------------cccccCCCCccCCCCCHHHHHHHHHHH
Q 004823 499 -PTKIAEDGSI---------MEWAQDFKDPE---VHHRHLS------------HLFGLFPGHTITIEKNPDLCKAAEKTL 553 (728)
Q Consensus 499 -p~~i~~~G~l---------~ew~~~~~~~~---~~hrh~s------------hL~~l~P~~~i~~~~~p~l~~aa~~tl 553 (728)
|+. .+.|.+ ++|..+....+ ..|-|.. -++.+||... .-+++.+++....+
T Consensus 218 lP~d-~~~gi~~q~dgy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qviKQADvvll~~~l~~---~~~~~~~~~n~~yY 293 (370)
T PF03632_consen 218 LPYD-EETGIIPQFDGYFDLKEWDFSEKPGDIRLLLHYHPDVIYRSQVIKQADVVLLMYLLPE---EFTEEQKRANLDYY 293 (370)
T ss_dssp --EE-TTTTEE-SSTTGGGS----GGGS-GGG-HHHCS-HHHHHHSS-BSS-SHHHHHHHTCC---CS-HHHHHHHHHHH
T ss_pred cCcC-CCCCCCcCCCCcccccCcChhhcCcccchhhcCCcccccccceecHHHHHHHHHHCCC---CCCHHHHHHHHHHH
Confidence 553 333433 33332211000 0011100 1233344321 24678888888999
Q ss_pred HHhCCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhccCCcccccCCCCcccccccCCCCccccc-hhhHHHHHHHHhh
Q 004823 554 QKRGEEGPGWSITWKTALWARLHDQEHAYRMVKRLFNLVDPEHEKHFEGGLYSNLFAAHPPFQIDA-NFGFTAAVAEMLV 632 (728)
Q Consensus 554 ~~r~~~~sgws~~~~~~~aARLgd~e~A~~~l~~~~~~~~~~~~~~~~~g~~~nl~~~h~pfqidg-n~g~~agi~emLl 632 (728)
++|+.|++++|.+++++++|++|+.++|+++|++.+. +|+++.. +++. +| +++.++|++.++|
T Consensus 294 e~~T~hdssLS~~i~ai~aa~lg~~~~A~~~f~~s~~-~Dl~~~~---~~~~------------~G~h~a~~gG~wq~~v 357 (370)
T PF03632_consen 294 EPRTTHDSSLSWSIHAIVAARLGDSEKAYDYFRKSAR-IDLDNEN---GNTA------------EGIHLAGMGGFWQAVV 357 (370)
T ss_dssp GGGB---STTCHHHHHHHHHHTT-HHHHHHHHCCCCT-TTTTTTT---S-GG------------G---GGGGGHHHHHHH
T ss_pred cCccCCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcccC---CCCC------------cchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877 5654331 2221 23 4567788899998
Q ss_pred hccCC
Q 004823 633 QSTLN 637 (728)
Q Consensus 633 qs~~g 637 (728)
+...|
T Consensus 358 ~Gf~G 362 (370)
T PF03632_consen 358 FGFGG 362 (370)
T ss_dssp TTTT-
T ss_pred hccCc
Confidence 88877
No 4
>KOG4125 consensus Acid trehalase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.4e-24 Score=228.95 Aligned_cols=372 Identities=14% Similarity=0.171 Sum_probs=243.9
Q ss_pred HHHHHHHHHHhCCHH-HHHHHHHHHHHhhhcceeEEecCCCCCcccccCcccccCCCChHHHHhhccCCCChHHHHHHHH
Q 004823 195 ESMSALQSIRNLSYS-DLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQ 273 (728)
Q Consensus 195 ~~~~~l~~a~~~~y~-~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~ 273 (728)
.+...|.++....-+ +|+++|.+.|..||+...+++.++- .|++. .+
T Consensus 209 ~t~~~L~~~LQL~s~g~Ll~~H~QaW~~lW~d~f~~~~~~L-------------------------------~L~Q~-~r 256 (682)
T KOG4125|consen 209 NTNIGLAKMLQLNSKGKLLSSHKQAWYDLWNDAFIEIPSDL-------------------------------LLEQT-AR 256 (682)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhhhccCcHH-------------------------------HHHHH-Hh
Confidence 344456666555555 8999999999999999988776421 12221 23
Q ss_pred HHHHHHHhcC-CC---CCCCCCC--ccccCCCCCCCCCCCcccccccccccccccCCCchhhhHHHHHHHHHhhHHHHHH
Q 004823 274 FGRYLLISSS-RP---GTQVANL--QGIWNEDLSPTWDSAPHVNINLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKT 347 (728)
Q Consensus 274 ~grYllisss-R~---g~~p~~L--qG~W~~~~~~~W~g~y~~niN~qm~ywp~~~~nlpE~~~pll~~~~~~l~~~r~~ 347 (728)
-|.|-|.|+- .+ +-+--|| .|+-|+.-...+.| |.+|++++-+.|+...-.||.++.+|.||.|.|+.|+.+
T Consensus 257 ~slfYllS~LPqpk~~n~~~~GLSP~GLsnG~~E~~Y~G--HvFWD~diWM~P~il~F~p~~A~~~L~YR~RtL~~Ak~n 334 (682)
T KOG4125|consen 257 SSLFYLLSNLPQPKDYNVSSDGLSPVGLSNGLSEDSYGG--HVFWDADIWMEPALLPFFPNVAQNMLNYRNRTLSQAKLN 334 (682)
T ss_pred hhhhhHhhcCCCcCCCCccccCcCcccccCCcchhhcCC--ceeecchhhhhhhhhhcCHHHHHHHHHhhhhhHHHHHhh
Confidence 4444444543 22 1111122 34444443445667 466778888899999999999999999999999999999
Q ss_pred HHHHcCCCceEEcccCCcCCCC-CCC--CCCcccccCccCHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhc
Q 004823 348 AQVNYLASGWVIHHKTDIWAKS-SAD--RGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWL 424 (728)
Q Consensus 348 A~~~yG~~G~~~~~~td~w~~~-~p~--~~~~~~~~w~~~~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l 424 (728)
|.. +|++|+.|||++--.|.. ++. .....++. +.+++.++--||.-|.|.+|++-.+||+++.+|+||.+++
T Consensus 335 A~~-~GY~GA~FpWESA~~G~EV~~e~~~~~QE~Hi----n~dv~~Af~~y~h~~~D~e~~~~t~Wpi~~~VA~F~~SRv 409 (682)
T KOG4125|consen 335 AEK-YGYPGAIFPWESAKYGNEVSTEGPCVDQEYHI----NVDVAMAFSIYLHEGIDDEYLRYTTWPIIKNVAQFFTSRV 409 (682)
T ss_pred HHh-cCCCCccccccccccccccCCCCCceeEEEEe----cHHHHHHHHHHHHhccchhhhccCCchhHHHHHHHhhhee
Confidence 999 899999999877555532 111 12233444 4588888888999999999999999999999999999999
Q ss_pred eecC-CCeEEECCCCCC-CCCcCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHcCCCC-CCC
Q 004823 425 IEGH-DGYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PTK 501 (728)
Q Consensus 425 ~~~~-~G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~L~-p~~ 501 (728)
++++ .+.||+..+++| |++ +.++|+.|||+.++-+|+-+..+|+.||.. ..++|+++.++|. |..
T Consensus 410 ~~~~s~~~yHL~nVM~PDE~H---------~~VNn~VYTNa~~k~~L~FA~~LA~hlG~~---~~~kW~eVsD~i~iprD 477 (682)
T KOG4125|consen 410 KYNSSLGLYHLYNVMDPDEFH---------NHVNNGVYTNAGIKTLLKFATDLANHLGEV---VDPKWSEVSDDIYIPRD 477 (682)
T ss_pred EecCccceeeeeccCCchhcc---------cccccchhhhHHHHHHHHHHHHHHHhhCCc---cChhHHHhccCceeccc
Confidence 9988 899999999999 665 258999999999999999999999999965 5679999999999 655
Q ss_pred CCCCCceeeecccCCCCcCCCCccccccccCCCCccCCCCCHHHHHHHHHHHHHhCCCCCCchHHH--HHHHHHhcCChh
Q 004823 502 IAEDGSIMEWAQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDLCKAAEKTLQKRGEEGPGWSITW--KTALWARLHDQE 579 (728)
Q Consensus 502 i~~~G~l~ew~~~~~~~~~~hrh~shL~~l~P~~~i~~~~~p~l~~aa~~tl~~r~~~~sgws~~~--~~~~aARLgd~e 579 (728)
+..+ .-.|..--....+...-. -...+||.+-+.. .... -..+.+..|+. .||-.|+| ++..+||+-..-
T Consensus 478 vs~N-~HPey~g~V~~~~ikqad--~~l~~ypl~~~~~---~s~~-ndl~~y~~~~~-~sgpamt~~~f~a~~~~~l~~~ 549 (682)
T KOG4125|consen 478 VSSN-IHPEYSGMVSSVEIKQAD--VTLMVYPLGYIND---ESIL-NDLYYYSERQS-ASGPAMTYPVFVAAAAGLLNHG 549 (682)
T ss_pred cccc-cChhhccccchhhhhhcc--eEEEecccccccc---hhhh-hhhhhhhhccc-ccCCccccHHHHHHHHhhhccc
Confidence 4321 111211000000111111 1234588876643 2211 12223333332 23433333 455566666666
Q ss_pred HHHHHHHHHHhc-cCCccc--ccCCCCcccccccCCCCccccchhhHHHHHHHHh
Q 004823 580 HAYRMVKRLFNL-VDPEHE--KHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEML 631 (728)
Q Consensus 580 ~A~~~l~~~~~~-~~~~~~--~~~~~g~~~nl~~~h~pfqidgn~g~~agi~emL 631 (728)
.|-++|.+.... ++++=. ..+..|. +.+.|-+.||.|+..++.-.+
T Consensus 550 ~~~~y~~~~~~~y~r~~f~~~se~~~g~------~~~a~flt~~ggflq~~~fg~ 598 (682)
T KOG4125|consen 550 SSSSYLYKSVLPYLRAPFAQFSEQSNGL------TQPAFFLTANGGFLQSILFGL 598 (682)
T ss_pred chhHHHHhcchhhccchhhhhccCCCCC------CCcceeeecccHHHHHHHhcc
Confidence 677777766543 221100 0111221 234466888988888776554
No 5
>PF14498 Glyco_hyd_65N_2: Glycosyl hydrolase family 65, N-terminal domain; PDB: 2EAE_A 2EAB_B 2EAC_A 2EAD_B 2RDY_A.
Probab=99.93 E-value=5.6e-25 Score=227.61 Aligned_cols=156 Identities=35% Similarity=0.599 Sum_probs=125.6
Q ss_pred hhhccccccC----cccccceeEEEEecCCCCCCCCCCeEEEEeccccEEEEEEEECCEEEEEEEEEecCCCEEEEEEEc
Q 004823 8 QSSCLDILQM----YVYQLLGDIELEFDDSHLKYAEETYRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISG 83 (728)
Q Consensus 8 ~~~~~~~~~~----~~y~~lG~l~i~~~~~~~~~~~~~Y~R~LDl~~gv~~v~~~~~g~~~~re~f~S~pd~viv~~i~~ 83 (728)
|.+|...... ++|||+|+|.|++......++ +|+|+|||++|+++|+|+.+|+.|+|++|||+||+|||+||++
T Consensus 74 ~~l~~~~~~~~~~~~~y~p~g~L~i~~~~~~~~~~--~Y~R~LDl~~a~~~v~~~~~g~~~~re~FaS~pd~viv~r~~~ 151 (236)
T PF14498_consen 74 EELAEENFGGEPGYGSYQPLGDLYIDFFPDAGDVS--DYRRELDLETAVATVSYTDGGVRYRREYFASRPDDVIVIRISA 151 (236)
T ss_dssp HHHHCCS-B---HH--B---EEEEEEESSSS---C--EEEEEEETTTTEEEEEEEETTEEEEEEEEEETTTTEEEEEEEE
T ss_pred HHHHHHhccCCCccccCCcceEEEEEEeCCCCCCC--cEEEEEEccCcEEEEEEEECCEEEEEEEEEECCCCEEEEEEEc
Confidence 3444444443 689999999999544366788 9999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeccCCC--CCeeeecCCeEEEEEecCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCceEEEecCCeEE
Q 004823 84 SESGSLSFNVSLDSLLD--NHSYVNGNNQIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLK 161 (728)
Q Consensus 84 ~~~~~l~~~~~l~~~~~--~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~~~~~~~~~l~ 161 (728)
+++++|+++++|+++.. ......++++|+++|+.|. .+|+.|++.++|+.+| |+++. .+++|.
T Consensus 152 ~~~~~l~~~l~l~~~~~~~~~~~~~~~~~l~~~g~~~~------------~~g~~~~~~~~v~~~g--G~v~~-~~~~l~ 216 (236)
T PF14498_consen 152 SKPGGLNLTLSLDRPLRTRSAVVTAGGGTLTLRGQAPG------------DNGMRFAGRVRVVATG--GTVTA-DGGGLR 216 (236)
T ss_dssp SSTT-EEEEEEEEBSTTSCEEEEEEETTEEEEEEEE-T------------TTS-EEEEEEEEEECC--CECEC-CTTCEE
T ss_pred CCCCcEEEEEEecCCcccccceEeecCCEEEEEEEeCC------------CCCeEEEEEEEEEeCC--CEEEe-eCCEEE
Confidence 99999999999999863 3334457889999999861 3689999999999999 99988 999999
Q ss_pred EeCCcEEEEEEEEeecCCC
Q 004823 162 VEGSDWAVLLLVASSSFDG 180 (728)
Q Consensus 162 v~~a~~v~l~~~~~T~~~~ 180 (728)
|++|++|+|++++.|+|++
T Consensus 217 v~~A~~v~l~~~~~T~y~~ 235 (236)
T PF14498_consen 217 VEGADEVTLYVSAATDYRG 235 (236)
T ss_dssp EEEESEEEEEEEEEESEET
T ss_pred EeCCCEEEEEEEEEecCCC
Confidence 9999999999999999974
No 6
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=98.49 E-value=0.00054 Score=81.08 Aligned_cols=326 Identities=14% Similarity=0.197 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccCcccccCCCChHHHHhhccCCCChHHHHHHHH
Q 004823 194 SESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQ 273 (728)
Q Consensus 194 ~~~~~~l~~a~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~ 273 (728)
+.+.+.+++....++++++++-.+.|+++-++... +.+... .. + ..+..+ |+
T Consensus 208 ~~a~~~~~~~~~~~~~~~~~~~~~~W~~w~~~~~~-~~~~~~-------------~~--~-----------~~~~~~-~~ 259 (616)
T TIGR01577 208 EKALEELEELRTLGFERIRSQTLADWEAYFGQAKP-VQTPCL-------------EM--D-----------NKIYSL-YR 259 (616)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc-CCCccc-------------cc--c-----------hHHHHH-HH
Confidence 34666666777789999999999999988775321 221110 00 0 011112 22
Q ss_pred HHHHHH-HhcCCC-CCCCCCCccccCCCCCCCCCCCccccc--ccccccccccCCCchhhhHHHHHHHHHhhHHHHHHHH
Q 004823 274 FGRYLL-ISSSRP-GTQVANLQGIWNEDLSPTWDSAPHVNI--NLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQ 349 (728)
Q Consensus 274 ~grYll-isssR~-g~~p~~LqG~W~~~~~~~W~g~y~~ni--N~qm~ywp~~~~nlpE~~~pll~~~~~~l~~~r~~A~ 349 (728)
-+.-.| ....++ |.+-+...-.|.. ...| +|++-| +.=+.-..+...+.+|.++.+++|+.+...
T Consensus 260 ~Sll~Lk~~~~~~~GaiiAs~s~~~~~--~~~~--~Y~y~W~RD~~~~a~Al~~~G~~~~a~~~l~~l~~~q~------- 328 (616)
T TIGR01577 260 RSLAVLRLLTDGEYGSMIAAPEFDEDF--VRCG--GYAYCWGRDASYIATALDRAGYHDRVDRFFRWAMQTQS------- 328 (616)
T ss_pred HHHHHHHhccCCCCCcEEEcCCCCccc--ccCC--CCceeccccHHHHHHHHHHCCCHHHHHHHHHHHHHhhC-------
Confidence 221111 222233 4422111100110 1122 355432 111223345578899999999999866532
Q ss_pred HHcCCCceEEcccCCcCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecCC
Q 004823 350 VNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHD 429 (728)
Q Consensus 350 ~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~~ 429 (728)
..|...|.. .+-|...|. .|..-.-..+.....+|+|++.|+|.+|++ ..+|+++.+++|...+... +
T Consensus 329 ----~~G~~~~~~-~~dG~~~~~----~~~~Q~D~~g~~l~al~~y~~~t~d~~~~~-~~~~~v~~a~~fl~~~~~~--~ 396 (616)
T TIGR01577 329 ----RDGSWQQRY-YLNGRLAPL----QWGLQIDETGSILWAMDQHYRLTNDRAFLE-EIWESVQKAAQYLILFIDP--E 396 (616)
T ss_pred ----cCCCcceEE-ecCCCCCCC----CCCccccchhHHHHHHHHHHHHHCCHHHHH-HHHHHHHHHHHHHHHhccC--C
Confidence 244333221 122221110 011111113345557889999999999996 5899999999999986522 1
Q ss_pred CeEEECCCCCC-CCCcCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHcCCCCC-CC---CCC
Q 004823 430 GYLETNPSTSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRP-TK---IAE 504 (728)
Q Consensus 430 G~~~~~ps~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~L~p-~~---i~~ 504 (728)
+. .|+... |.. .| -.+++++++...|..++++++.+|.+ +..++|++.++++.- .. .++
T Consensus 397 l~---~~~~~lWEer----~G-------~~~~t~a~~~aAL~~aa~lA~~lGd~--~~a~~~~~~Ad~ik~~i~~~~w~~ 460 (616)
T TIGR01577 397 TP---LPCRDLWEER----EG-------VFTYTASAVYGGLDAAAAVADKLGEK--RLAQNWKKAAEFIKRAVEERFWLP 460 (616)
T ss_pred CC---CCCCccceec----CC-------ccCccHHHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHHHHHhccCC
Confidence 11 133222 221 12 14688999999999999999999864 356678777766652 11 112
Q ss_pred C-CceeeecccCCCCcCCCCcccccccc-CCCCccCCCCCHHHH---HHHHHHHHH-------h--CC---CCCCc--hH
Q 004823 505 D-GSIMEWAQDFKDPEVHHRHLSHLFGL-FPGHTITIEKNPDLC---KAAEKTLQK-------R--GE---EGPGW--SI 565 (728)
Q Consensus 505 ~-G~l~ew~~~~~~~~~~hrh~shL~~l-~P~~~i~~~~~p~l~---~aa~~tl~~-------r--~~---~~sgw--s~ 565 (728)
+ |.......+ . +....--.| ++.+ .|++.+.+ .+|... +++.+.|.. | .+ ++..| +-
T Consensus 461 ~~g~F~~~~~~-~-~~~~~vDaS-lL~l~~~~g~l~~-~Dpr~v~Tv~~I~~~L~~~~~ggi~RY~~D~y~~g~~w~i~T 536 (616)
T TIGR01577 461 ERQVFAKGIKL-M-VLDKTIDIS-ILGISVPFNLIAP-DDERMVKMAEAIEKHLTSPIVGGIKRYENDPYVGGNPWILTT 536 (616)
T ss_pred CCCEEEEeecC-C-CCCCcccHH-HHhHHHhcCCCCC-CChHHHHHHHHHHHHhcccCCCeeeCCCCCCCCCCCcHHHHH
Confidence 2 222211110 0 001111223 4444 56777776 455443 444444421 1 11 12344 34
Q ss_pred HHHHHHHHhcCChh-------------HHHHHHHHHHh
Q 004823 566 TWKTALWARLHDQE-------------HAYRMVKRLFN 590 (728)
Q Consensus 566 ~~~~~~aARLgd~e-------------~A~~~l~~~~~ 590 (728)
.|.+...+++|+.+ +|.++|..++.
T Consensus 537 ~wla~~~~~~g~~~~~~~~~~~~~~~~~A~~ll~~~~~ 574 (616)
T TIGR01577 537 LWLSQLYIKQGRILKALNHNGADIYLQKSKKLLKWVMD 574 (616)
T ss_pred HHHHHHHHHhcccccccccchhhhHHHHHHHHHHHHHh
Confidence 56677778888765 88888888877
No 7
>PF10222 DUF2152: Uncharacterized conserved protein (DUF2152); InterPro: IPR018795 This entry includes mainly uncharacterised proteins, though some are described as belonging to the glycoside hydrolase family 65.
Probab=98.15 E-value=8e-05 Score=85.90 Aligned_cols=168 Identities=13% Similarity=0.174 Sum_probs=105.6
Q ss_pred EEeccccEEEEEEEE----CCEEEEEEEEEecCC-CEEEEEEEcCCCCceEEEEEeccCCCCCe------e--eec--CC
Q 004823 45 ELDLNTATARVKYSV----GNVEFTREHFSSNPD-QVIVTKISGSESGSLSFNVSLDSLLDNHS------Y--VNG--NN 109 (728)
Q Consensus 45 ~LDl~~gv~~v~~~~----~g~~~~re~f~S~pd-~viv~~i~~~~~~~l~~~~~l~~~~~~~~------~--~~~--~~ 109 (728)
-+|+.+|.+..-.+. +++.++.++||++.- +|+|-+|+-+.+....+++.+..+..... . ..+ .+
T Consensus 136 vv~fr~G~V~~~qC~~~~~~cv~Vs~~~YAHRTrPnLLVQeI~ItNP~~~~vtv~Ls~~~~~~~~~~~~~~~~~~~~~~e 215 (604)
T PF10222_consen 136 VVDFRNGIVHRVQCFKSERDCVCVSQQYYAHRTRPNLLVQEIQITNPTNRDVTVELSSPRSSNWPNSFSSSIEKVSDSHE 215 (604)
T ss_pred EEEEecCeEEEEEEEeecCCceEEEEEEEEecccCcEEEEEEEEECCCCCcEEEEEeCCCCCCccccceeEEEEecCCcc
Confidence 489999998875455 678899999999985 69998888888766667777755543211 1 112 24
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCcceEEEEEEEEEeCCCceEEEecCCeEEEeCCcEEE--EEEEEeecCCCCCCCCCC
Q 004823 110 QIIMEGRCPGKRIPPKANANDDPKGIQFSAILEIKISDDRGTISALEDKKLKVEGSDWAV--LLLVASSSFDGPFINPSD 187 (728)
Q Consensus 110 ~l~~~g~~~~~~~~~~~~~~~~~~g~~f~~~~~v~~~g~~G~~~~~~~~~l~v~~a~~v~--l~~~~~T~~~~~~~~~~~ 187 (728)
....+|..+.. .++ ..+.+.|+.+. -.++|+|++.++.. ++.++.++-.-+-.+...
T Consensus 216 ~~v~sG~V~~~-----------~~~--~~i~VaVv~~k--------lP~~iqV~~ks~~~~~~ltvV~yS~Pi~~~~~~~ 274 (604)
T PF10222_consen 216 YQVSSGKVPPP-----------EDS--KVIVVAVVTKK--------LPSTIQVKAKSETKLTFLTVVNYSEPIDESKYKE 274 (604)
T ss_pred EEEEEEEEcCC-----------CCC--cEEEEEEEeCC--------CCCCEEECCCceEEEEEEEEEEEeccccchhhhh
Confidence 45667776432 111 22233344443 56788888766554 455554543210000000
Q ss_pred CCCChHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhhhcceeEEecCCC
Q 004823 188 SKKDPTSESMSALQSIRN--LSYSDLYTRHLDDYQKLFHRVSIQLSRSP 234 (728)
Q Consensus 188 ~~~~~~~~~~~~l~~a~~--~~y~~l~~~H~~~w~~~w~r~~l~l~~~~ 234 (728)
..+...+.|.+.+.++.. .+.+.|+++|.+.|+++|. +.+.++.+.
T Consensus 275 ~~~~l~~~a~~em~~ll~~~~~~~~L~~eH~~aW~~Lw~-SG~~Is~sk 322 (604)
T PF10222_consen 275 TFEALEEQAKKEMKELLQSGMSVEDLLQEHVDAWSDLWS-SGFEISKSK 322 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhh-ccccccccc
Confidence 011223557777777777 7999999999999999999 677776543
No 8
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=97.85 E-value=3.3e-05 Score=89.20 Aligned_cols=267 Identities=20% Similarity=0.218 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceec--CCCeEEECCCCC-CCCCcCCCCCCccccccCcHHH
Q 004823 385 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG--HDGYLETNPSTS-PEHEFIAPDGKLACVSYSSTMD 461 (728)
Q Consensus 385 ~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~--~~G~~~~~ps~s-PE~~~~~~~g~~~~~~~n~t~d 461 (728)
+.+....+|+||++|||++||+ +.||.|+...+|+..+.... ......+. +.. |+... .......+..
T Consensus 206 ~l~~i~~~~~~y~~tGD~~~l~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-DW~~~~~~~-------~~~~~~~~~~ 276 (509)
T PF05592_consen 206 SLAWIIIPWDYYLYTGDREFLE-EYYPAMKRYLDYLERRVDDGLDGLPGWGFG-DWLAPGNDG-------DGPTPGATIT 276 (509)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHH-HHHHHHHHHHHHHHTTB-TSSB-CCSB--S--SS----TT----------SCCEEHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHHhCCccccCCCCCcee-ecCCccCcc-------cccchHHHHH
Confidence 3456688999999999999997 68999999999999876540 00011111 111 11110 1124566678
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHcCCCC-CCC---C-CCCCceeeecccCCCCcCCCCcccc----ccccC
Q 004823 462 MAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR-PTK---I-AEDGSIMEWAQDFKDPEVHHRHLSH----LFGLF 532 (728)
Q Consensus 462 ~~~~r~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~L~-p~~---i-~~~G~l~ew~~~~~~~~~~hrh~sh----L~~l~ 532 (728)
+++....++.+.++++.||.+ +..++|++.+++|. .+. . .+.|.. ......+. ++++.
T Consensus 277 ~~~~~~~l~~~a~lA~~lg~~--~~a~~y~~~a~~lk~a~~~~~~d~~~g~~-----------~~~sq~~~alAl~~gl~ 343 (509)
T PF05592_consen 277 NALYYYALRAAAELAEALGKD--EDAAEYRARAERLKAAINRHFWDPEKGGY-----------ADGSQHANALALLFGLV 343 (509)
T ss_dssp HHHHHHHHHHHHHHHHHCT-H--HHHHHHHHHHHHHHHHHHHHCEETTTTEE-----------CTTSHCHHHHCHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHHhccCcccCcc-----------cCCchHHHHHHHHhchh
Confidence 899999999999999999964 34677777777665 221 1 122200 01111122 23443
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHh----CCC-CCC-chHHHHHHHHHhcCChhHHHHHHHHHHhc-----cCCcccccCC
Q 004823 533 PGHTITIEKNPDLCKAAEKTLQKR----GEE-GPG-WSITWKTALWARLHDQEHAYRMVKRLFNL-----VDPEHEKHFE 601 (728)
Q Consensus 533 P~~~i~~~~~p~l~~aa~~tl~~r----~~~-~sg-ws~~~~~~~aARLgd~e~A~~~l~~~~~~-----~~~~~~~~~~ 601 (728)
|.... .+++.+.|..+ +.+ ..| .+..+..-..++.|..+.|++++.+.... ++...
T Consensus 344 p~~~~--------~~~~~~~l~~~~~~~~~~~~~g~~g~~~~~~~L~~~g~~~~a~~~~~~~~~~~w~~ml~~g~----- 410 (509)
T PF05592_consen 344 PEEER--------AAAALKRLAKRIAANGYHLSTGFIGSPYLLEALFRAGRADGAYDLLTQRDYPSWGYMLDQGA----- 410 (509)
T ss_dssp -HHHH--------TCHCHCHCHHCCHCCCHS--TCCC-CHHHHHHHHHCCHHCCHHHHHHHHHHHHCHHHHCTT------
T ss_pred hhhhh--------HHHHHHHHHHHHHhcCCCcCcccccHHHHHHHHHHcCCHHHHHHHHHhccccchhHHHhCCC-----
Confidence 32211 12222333222 111 111 12223333456788999999998764321 22111
Q ss_pred CCcccccccC--CCCccccchhhHHHHHHHHhhhccC---------CeeEeCCCCCcccccCceeeceEeeccEEEEEEE
Q 004823 602 GGLYSNLFAA--HPPFQIDANFGFTAAVAEMLVQSTL---------NDLYLLPALPWDKWSSGCVKGLKARGGETVSICW 670 (728)
Q Consensus 602 ~g~~~nl~~~--h~pfqidgn~g~~agi~emLlqs~~---------g~i~llPalP~~~W~~gs~~gL~arG~~~V~~~w 670 (728)
.++.=.|+. ..+....-|++..+++..-|.+.-. ..+++-|.+| ......+.+=-..+|-+.|+.+.
T Consensus 411 -tT~wE~w~~~~~~~~~~S~~H~w~~~p~~~l~~~v~GI~p~~pG~~~~~i~P~~~-~~L~~~~~~~~T~~G~I~v~w~~ 488 (509)
T PF05592_consen 411 -TTLWEYWDGDGGDPPNRSLCHAWSAGPTYWLYRYVLGIRPTEPGFKEFRIAPQPP-GDLTWAEGTVPTPYGEISVSWKR 488 (509)
T ss_dssp -SS--SS-STT-TCTT-S-SSBGGG-THHHHHHHCTS-EEESSGGGSEEEE------TT-SEEEEEEEETTCEEEEEEEE
T ss_pred -CEEEEecCccCCCCCCCCCCCCcchhHHHHHHHHhhceEeCCCCCcEEEEEEecC-CCCcEEEEEEECCCceEEEEEEE
Confidence 111111221 1222334477777788877765433 3688899997 55443333212234545555555
Q ss_pred eCCeEEEEEEEeCCCCCcc
Q 004823 671 KDGDLHEVGIYSNYSNNDH 689 (728)
Q Consensus 671 ~~g~l~~~~i~s~~~~~~~ 689 (728)
++|++ +++|+...+-+.+
T Consensus 489 ~~g~~-~l~v~vP~~t~a~ 506 (509)
T PF05592_consen 489 EDGKL-TLEVTVPAGTTAE 506 (509)
T ss_dssp ETTEE-EEEEEEETTSEEE
T ss_pred eCCEE-EEEEEeCCCCEEE
Confidence 67774 6666666655554
No 9
>COG3459 Cellobiose phosphorylase [Carbohydrate transport and metabolism]
Probab=97.44 E-value=0.025 Score=67.40 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhHHHHHHH---------HHHHHHhc------e--ecCCCeEEECCCCCCCCCcCCCC
Q 004823 386 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGC---------ASFLLDWL------I--EGHDGYLETNPSTSPEHEFIAPD 448 (728)
Q Consensus 386 awla~~~w~yy~~TgD~~fL~~~~~p~l~e~---------A~F~~~~l------~--~~~~G~~~~~ps~sPE~~~~~~~ 448 (728)
.|+++.+-+|-.-|||.++|.+ ..|++.+= +.-|++.. + ..+.|...+.. + . + .|
T Consensus 672 vWl~~a~~~Yl~~TGD~aILdE-~iPf~~~~~l~~~s~e~~TLyEH~~rAld~av~r~g~~glpli~g--G-D--W--ND 743 (1056)
T COG3459 672 VWLLKAIADYLKETGDAAILDE-VIPFIDGPALPEFSKEQATLYEHCARALDLAVARLGPHGLPLILG--G-D--W--ND 743 (1056)
T ss_pred eeeHHHHHHHHHhcCcHhhhhc-cccccCCCccccccccchhHHHHHHHHHHHHHHhcCCCCcccccC--C-c--c--cc
Confidence 6999999999999999999964 56776433 33333321 1 11223221110 0 1 0 11
Q ss_pred CCcc--ccc-cCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHcCCCC
Q 004823 449 GKLA--CVS-YSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 498 (728)
Q Consensus 449 g~~~--~~~-~n~t~d~~~~r~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~L~ 498 (728)
|-+- ... --+.+-=-.+-..|+..+++++.++. .+...+|.+-++.|.
T Consensus 744 ~ln~vg~~g~geSv~lgW~l~~tlq~F~~lak~r~d--~~r~~~~~~~~ea~~ 794 (1056)
T COG3459 744 GLNLVGNGGKGESVWLGWFLALTLQTFKELAKARGD--EARADTWAKHVEALR 794 (1056)
T ss_pred cccccccCCccceeehhhHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHH
Confidence 1100 000 01112222344566777788888874 456778888888777
No 10
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=97.10 E-value=0.00051 Score=75.83 Aligned_cols=168 Identities=18% Similarity=0.245 Sum_probs=51.5
Q ss_pred cccccCCCchhhhHHHHHHHHHhhHHHHHHHHHHcCC---------CceEEcccC----CcCCCCCCCCCCcccccCccC
Q 004823 318 YWQSLPCNLSECQEPLFDFLTYLSINGSKTAQVNYLA---------SGWVIHHKT----DIWAKSSADRGKVVWALWPMG 384 (728)
Q Consensus 318 ywp~~~~nlpE~~~pll~~~~~~l~~~r~~A~~~yG~---------~G~~~~~~t----d~w~~~~p~~~~~~~~~w~~~ 384 (728)
+-.++....|++.+++..-..+....--.+-+. +++ +|.+-|--. +||..+... .......|.=.
T Consensus 23 ~s~al~~lfP~Le~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~G~vphdlg~p~~~P~~~~n~y-~~~~~~~~~D~ 100 (365)
T PF04685_consen 23 ASFALLKLFPELERSMQRDFADAILSEDNTERK-ILYDGKIAPRKVRGAVPHDLGSPFDDPWDRTNAY-NYHDVYAWKDL 100 (365)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 566777888999999875554433221111111 222 355543222 345433210 00011223334
Q ss_pred HHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecCCCeEEECCCCCCCCCcCCCCCCccccccCcHHHHHH
Q 004823 385 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAI 464 (728)
Q Consensus 385 ~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~ 464 (728)
..+....+|++|+.|||.+||+ ..||.++.+.+|...+ ..+.||- +.....|++.+. .-. +.--++|...+
T Consensus 101 ~~~fVL~vyr~~~~TGD~~fL~-~~wp~v~~a~~~~~~~-D~d~dGl--~e~~g~~D~TyD---~~~--~~G~say~~~L 171 (365)
T PF04685_consen 101 NPKFVLQVYRDYKWTGDRDFLK-EMWPAVKKAMDYLLSW-DRDGDGL--PENPGHPDQTYD---DWS--MYGPSAYCGGL 171 (365)
T ss_dssp -----------------------EHHHHHHHHHHHHHHS-B--TTS---BEEET---SSST---T-E--EEEEEHHHHHH
T ss_pred cccccccccccccccccchhhh-hHHHHHHHHHHHHHhh-CCCCCCC--CCCCCCCccccc---cCC--eeCCCHHHHHH
Confidence 6777899999999999999997 6899999999999983 2333663 222233455542 111 22346899999
Q ss_pred HHHHHHHHHHHHHHhCCCchHHHHHHHHHcCCCC
Q 004823 465 IREVFSAIISAAEVLEKNEDALVEKVLKSLPRLR 498 (728)
Q Consensus 465 ~r~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~L~ 498 (728)
.-..|+.++++++.||. .+..+++++.+++..
T Consensus 172 ~laAL~A~~emA~~lgd--~~~a~~y~~~~~~~~ 203 (365)
T PF04685_consen 172 WLAALRAAAEMAKILGD--PELAAKYRELAEKAK 203 (365)
T ss_dssp HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence 99999999999999995 345666766666554
No 11
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=96.86 E-value=0.84 Score=54.21 Aligned_cols=223 Identities=15% Similarity=0.148 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccCcccccCCCChHHHHhhccCCCChHHHHHHHH
Q 004823 194 SESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQ 273 (728)
Q Consensus 194 ~~~~~~l~~a~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~ 273 (728)
+.|.+.+..+.+.+|+.++++-.+.|+++-++.. .+.++ +.+++.
T Consensus 210 ~~a~~~~~~~l~~g~~~~~~~~~~~W~~w~~~~~-~~~~~---------------------------------~~~~~~- 254 (648)
T TIGR01535 210 YEAAKTAVATLKEGYRRVKDAYIDEWEKYLNSLN-NFNGK---------------------------------GNSLYY- 254 (648)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cCCch---------------------------------HHHHHH-
Confidence 4455666677788999999999999999877641 12211 112222
Q ss_pred HHHHHHHh-cC--CCCCCCCCCccccCCCCCCCCCCCccccc--ccccccccccCCCchhhhHHHHHHHHHhhHHHHHHH
Q 004823 274 FGRYLLIS-SS--RPGTQVANLQGIWNEDLSPTWDSAPHVNI--NLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTA 348 (728)
Q Consensus 274 ~grYllis-ss--R~g~~p~~LqG~W~~~~~~~W~g~y~~ni--N~qm~ywp~~~~nlpE~~~pll~~~~~~l~~~r~~A 348 (728)
-+.-.|-. .. .+|.+.+.++=.|-+...-.=+++|++=| +.=+....+...+..|.++.+|+|+.+....
T Consensus 255 rS~lvLK~~~d~~~~GAiIAA~Tts~pe~~g~~~n~dYryvW~RD~a~~a~AL~~~G~~~~a~~~~~~l~~~~~~----- 329 (648)
T TIGR01535 255 VSMMILKAHEDKTNPGAYIASLSIPWGDGQADDNTGGYHLVWPRDLYQVANAFLAAGDVDSALRSLDYLAKVQQD----- 329 (648)
T ss_pred HHHHHHHHhcCCCCCCcEEEecCCCCCccCCCCCCCceEEEehhhHHHHHHHHHHCCCHHHHHHHHHHHHHHhcc-----
Confidence 23222222 22 34776666655555432111123466422 1111222455688999999999999776541
Q ss_pred HHHcCCCceEEcccCCcCCCCCCCCCCcccccCccC-HHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceec
Q 004823 349 QVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMG-GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEG 427 (728)
Q Consensus 349 ~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~w~~~-~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~ 427 (728)
.|...+ +..+-| .+.|.--+.. .+.+...+|.+++. +.. ..+++++.+|+|....--.-
T Consensus 330 ------~G~~lq-~y~vdG-------~~~~~~iQlD~~g~~i~~~~~l~~~--~~~----~~~~~vk~aadfl~~~~p~p 389 (648)
T TIGR01535 330 ------NGMFPQ-NSWVDG-------KPYWTGIQLDETAFPILLAYRLHRY--DHA----FYDKMLKPAADFIVKNGPKT 389 (648)
T ss_pred ------CCCcCc-eeccCC-------CCCCCCccccHHHHHHHHHHHHHHc--CcH----HHHHHHHHHHHHHHHcCCCC
Confidence 232211 121211 1111111111 22333344555553 222 25799999999998853111
Q ss_pred CCCeEEECCCCCCCCCcCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHcCCC
Q 004823 428 HDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRL 497 (728)
Q Consensus 428 ~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~L 497 (728)
..|.. |... | -.+||.+.+-..|..++++++.+|.+ +..++|++.++++
T Consensus 390 ~~d~W--------Eer~----g-------~~~~T~a~v~aaL~~Aa~iA~~~g~~--~~a~~w~~~Ad~i 438 (648)
T TIGR01535 390 GQERW--------EEIG----G-------YSPSTLAAEIAGLTAAADIAEQNGDA--GSAQKYRETADNW 438 (648)
T ss_pred CCCcc--------cccC----C-------cCchhHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHH
Confidence 12222 2221 1 22477777778999999999999875 3566777755554
No 12
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=96.78 E-value=0.059 Score=59.85 Aligned_cols=282 Identities=20% Similarity=0.212 Sum_probs=140.6
Q ss_pred cCCCchhhhHHHHHHHHHhhHHHHHHHHHHcCCCceEEcccCCcCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCC
Q 004823 322 LPCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMD 401 (728)
Q Consensus 322 ~~~nlpE~~~pll~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~~w~yy~~TgD 401 (728)
+..+.++.++..|..+.+.+. .|-+ |+..+. + ..+.|+ ..-+..|....+.+|+++|+|
T Consensus 44 l~~~~~~~a~~~L~~~~~~~~------------~G~i-pn~~~~-~------~~~~Y~-s~Dat~wfl~~l~~Y~~~t~D 102 (370)
T PF06202_consen 44 LSPGRFEEARNILATFAGTQR------------HGLI-PNELRD-G------EEPRYN-SVDATLWFLIALQEYYRWTGD 102 (370)
T ss_pred hCCCcHHHHHHHHHHHHHhhh------------cCcc-cCcccC-C------CCCCCC-CCccHHHHHHHHHHHHHHhCC
Confidence 456778888887776654443 3332 222111 1 111221 112367999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhce----ecC-CCeEEECCCCCCCCCcCC--CCCCccccccCc-HHHHHHHHHHHHHHH
Q 004823 402 RDFLEKRAYPLLEGCASFLLDWLI----EGH-DGYLETNPSTSPEHEFIA--PDGKLACVSYSS-TMDMAIIREVFSAII 473 (728)
Q Consensus 402 ~~fL~~~~~p~l~e~A~F~~~~l~----~~~-~G~~~~~ps~sPE~~~~~--~~g~~~~~~~n~-t~d~~~~r~l~~~~~ 473 (728)
.+||+ +.+|.++++.+.+.+... .++ +| +........=..+.+ .+|.....-.+. .--|+++...+..+.
T Consensus 103 ~~~l~-~~~~~i~~il~~~~~g~~~~~~~d~~~g-l~~~~~~~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~ 180 (370)
T PF06202_consen 103 YSFLR-ELYPAIEEILEWYADGTDFGIRVDPEDG-LIYSGNGLNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAA 180 (370)
T ss_pred HHHHH-HHHHHHHHHHHHHHhCCCCccccccCCC-eeecCCCCCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHH
Confidence 99996 689999999999877433 232 44 333322111111111 111111001112 234567777777777
Q ss_pred HHHHHhCCCchHHHHHHHHHcCCCC-CC----CCCCCCceeeecccCCCCcCCCCcccccccc-CCCCccCCCCCHHHHH
Q 004823 474 SAAEVLEKNEDALVEKVLKSLPRLR-PT----KIAEDGSIMEWAQDFKDPEVHHRHLSHLFGL-FPGHTITIEKNPDLCK 547 (728)
Q Consensus 474 ~a~~~L~~~~~~~~~~w~~~~~~L~-p~----~i~~~G~l~ew~~~~~~~~~~hrh~shL~~l-~P~~~i~~~~~p~l~~ 547 (728)
++++..+.+ ...+|++.+++|. -+ -..+.|.+........+.+..-|.. +++++ .|...++++......+
T Consensus 181 ~la~~~~~~---~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~~~d~~irpN-~~~a~~L~~~~l~~~~a~~vl~ 256 (370)
T PF06202_consen 181 ELAEKFGDE---LAARYREWAERLKESFEKRFWDEDRGYYADALDGDKEPDDSIRPN-QLIALSLPPGLLDPEQAKKVLD 256 (370)
T ss_pred HHHhhcCCc---hHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCCCCCcccccC-chhHHhcCCccCCHHHHHHHHH
Confidence 777765432 4556766666665 22 2233444443322212233333433 22221 3444444322222222
Q ss_pred HHH---------HHHHH-----hC-------------CCCCCch--HHHHHHHHHhcCC-hhHHHHHHHHHHhccCCccc
Q 004823 548 AAE---------KTLQK-----RG-------------EEGPGWS--ITWKTALWARLHD-QEHAYRMVKRLFNLVDPEHE 597 (728)
Q Consensus 548 aa~---------~tl~~-----r~-------------~~~sgws--~~~~~~~aARLgd-~e~A~~~l~~~~~~~~~~~~ 597 (728)
.+. +||.. ++ -.++-|. .++.+...+|.|. .+++.+.++.++..+.. ..
T Consensus 257 ~~~~~L~tp~GlRTLs~~~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~~~~~~~~~~~~ll~~~~~-~~ 335 (370)
T PF06202_consen 257 RVEEELLTPWGLRTLSPSDPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGFDEEEAIREAKSLLEGFEE-HL 335 (370)
T ss_pred HHHHHcCCCCchhcccCCCCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HH
Confidence 222 23321 11 0234444 3444445677777 46677766666652210 00
Q ss_pred ccCCCCcccccccCCCCccccchhhHHHHHHHHh
Q 004823 598 KHFEGGLYSNLFAAHPPFQIDANFGFTAAVAEML 631 (728)
Q Consensus 598 ~~~~~g~~~nl~~~h~pfqidgn~g~~agi~emL 631 (728)
....-+..|-+|+..+|+...|+..=+-++.++|
T Consensus 336 ~~~~~~~lpEl~dg~~~~~p~gc~~QAWS~a~il 369 (370)
T PF06202_consen 336 QEFGLGRLPELFDGDPPHYPRGCSPQAWSVAEIL 369 (370)
T ss_pred hhccCCCcchhcCCCCCCCCCCCHHHHHHHHHhh
Confidence 1112455677888777776666655444555553
No 13
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.09 Score=61.96 Aligned_cols=321 Identities=17% Similarity=0.180 Sum_probs=182.3
Q ss_pred HhCCHHHHHHHHHHHHHhhhcceeEEecCCCCCcccccCcccccCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHhc-
Q 004823 204 RNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPKDIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISS- 282 (728)
Q Consensus 204 ~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~~~~~~~~~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~~grYlliss- 282 (728)
...+|+.++++-...|+..=++... +... ... .++-+.+.|.+.
T Consensus 213 ~~~~~e~~l~~~~~~Wr~w~~~~~~-~~~~---------------------------------~~~-~~~rS~l~l~~~~ 257 (612)
T COG3387 213 LKRGYELILERTTDYWRSWLSKLNP-LGRA---------------------------------YAS-ALYRSALVLKALN 257 (612)
T ss_pred ccccHHHHHHHHHHHHHHHHhhcCC-cchh---------------------------------hHH-HHHHHHHHHHHcc
Confidence 3568999999999999865443211 1100 001 122333344332
Q ss_pred CC-CCCCCCCCccccCCCCCCCCCC-Cccccccccccc--ccccCCCchhhhHHHHHHHHHhhHH-HHHHHHHHcCCCce
Q 004823 283 SR-PGTQVANLQGIWNEDLSPTWDS-APHVNINLEMNY--WQSLPCNLSECQEPLFDFLTYLSIN-GSKTAQVNYLASGW 357 (728)
Q Consensus 283 sR-~g~~p~~LqG~W~~~~~~~W~g-~y~~niN~qm~y--wp~~~~nlpE~~~pll~~~~~~l~~-~r~~A~~~yG~~G~ 357 (728)
.. .|.+-++....|.+.. ++. ||++-|.=-.++ +.....+..+.++.+|.|+.+.... +. -...|...|.
T Consensus 258 ~~~~G~ivAs~t~~l~~~~---~g~~dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~~~~~~--~~~~y~~~g~ 332 (612)
T COG3387 258 YNPTGAIVASPTTSLPELI---GGTRDYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQTPNGK--LYHKYSIDGS 332 (612)
T ss_pred cCCCCcEEEcCCCCccccC---CCCCCceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhhCCCCc--eeeEEecCCC
Confidence 22 3666666666666532 221 366554333333 4455678889999999888765432 21 1222444443
Q ss_pred EEcccCCcCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecCCCeEEECCC
Q 004823 358 VIHHKTDIWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPS 437 (728)
Q Consensus 358 ~~~~~td~w~~~~p~~~~~~~~~w~~~~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~~G~~~~~ps 437 (728)
.-...|.. .. +....+..+...+++...+++.|+....|..+..++...+.+..+.|... +.+...+ -..|+
T Consensus 333 ---~~~~~w~~-~~-~~~~~~pv~~~~~a~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~p~ 404 (612)
T COG3387 333 ---DLAESWLP-VS-GYYNSFPVRIGNTALVQGALDVYGSIMNDIYFYAKYYAIYILPAADYLRR-MEKIKAN--LPTPD 404 (612)
T ss_pred ---cccccccc-cc-CCCCCCceEEcchhhHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH-HHhhhcC--CCCCc
Confidence 11112221 00 11123344555689999999999999999999988889999999999988 5432212 12334
Q ss_pred CCC-CCCcCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHcCCCCCC--C--CCCC-Cceeee
Q 004823 438 TSP-EHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPT--K--IAED-GSIMEW 511 (728)
Q Consensus 438 ~sP-E~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~L~p~--~--i~~~-G~l~ew 511 (728)
.+= |..+ ..-+|+..+++..|..+.++++.+| + .+..+.|+..+++|.-- . ...+ |. +
T Consensus 405 ~~~WEer~-----------g~~~yt~~~~~agLd~A~~lA~~~g-d-~~~a~~~~~~ad~ik~~v~~~~~~~~~~~---f 468 (612)
T COG3387 405 FDLWEERG-----------GHFTYTKATVYAGLDAAADLAEEFG-D-KGSAEHWRKTADELKEAVLRRGYAEDGGY---F 468 (612)
T ss_pred cceecccC-----------CcccchHHHHHHHHHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHHHhcccccCCe---e
Confidence 333 3321 1567999999999999999999999 4 55677888777776521 0 1122 11 1
Q ss_pred cccCCCCcCCCCccccccccCCCCccCCCCCHHH---HHHHHHHHHH------h--C--CCCC-----Cc--hHHHHHHH
Q 004823 512 AQDFKDPEVHHRHLSHLFGLFPGHTITIEKNPDL---CKAAEKTLQK------R--G--EEGP-----GW--SITWKTAL 571 (728)
Q Consensus 512 ~~~~~~~~~~hrh~shL~~l~P~~~i~~~~~p~l---~~aa~~tl~~------r--~--~~~s-----gw--s~~~~~~~ 571 (728)
...+.+ .+.--+-+-|.++.=++.|.+ ++|.. .++..+.|.. | + ..+. -| .-.|++-.
T Consensus 469 ~r~~~~-~~~~~vDasll~l~~fg~i~~-~D~~~~~t~~~I~~~L~~~~~gi~RY~~~~~d~~~~~~~~w~i~t~Wl~~~ 546 (612)
T COG3387 469 VRSLGR-KPDDTVDASLLGLVLFGFIPP-DDPRILATVEAIERELLVDGGGIRRYNNEYDDGLGGDNGPWIITTLWLSEY 546 (612)
T ss_pred ehhcCC-CccccccHHHhhccccCccCC-CCHHHHHHHHHHHHHHhhcCCcEEcCccccccccCCCCCcceeehhHHHHH
Confidence 111111 112122233334322345655 56633 2233333311 1 1 1111 23 34788888
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 004823 572 WARLHDQEHAYRMVKRLFN 590 (728)
Q Consensus 572 aARLgd~e~A~~~l~~~~~ 590 (728)
..++|+.++|.++|+.++.
T Consensus 547 ~~~~g~~~~a~~ll~~l~~ 565 (612)
T COG3387 547 YLALGRLDEAKKLLEWLLA 565 (612)
T ss_pred HHHccchHHHHHHHHHHHH
Confidence 9999999999999998877
No 14
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=96.68 E-value=0.17 Score=59.92 Aligned_cols=293 Identities=17% Similarity=0.206 Sum_probs=147.8
Q ss_pred CCCchhhhHHHHHHHHHhhHHHHHHHHHHcCCCceEEcccCCcCCCCCCCCCCcccccCcc-CHHHHHHHHHHHHHhcCC
Q 004823 323 PCNLSECQEPLFDFLTYLSINGSKTAQVNYLASGWVIHHKTDIWAKSSADRGKVVWALWPM-GGAWLCTHLWEHYNYTMD 401 (728)
Q Consensus 323 ~~nlpE~~~pll~~~~~~l~~~r~~A~~~yG~~G~~~~~~td~w~~~~p~~~~~~~~~w~~-~~awla~~~w~yy~~TgD 401 (728)
..++||+|+..+.++.+.. .+|-.-|.. .... ++.+.|+ +. ...|.+..+-+|+.+|+|
T Consensus 298 ~~g~~elArg~L~~~a~~~------------~~GkIPhe~----~~~~--~~~~~Y~--tvD~t~~~i~~~~~y~~~t~d 357 (641)
T COG3408 298 LVGRFELARGTLNTLARYS------------EPGKIPHEI----LLSI--PGEPYYN--TVDATPLFIYLLGAYLKYTGD 357 (641)
T ss_pred hcCCHHHHHHHHHHHHhhc------------cCCCCcchh----hhcC--CCcceec--cCCCcHHHHHHHHHHHHHhcc
Confidence 3468999999888876652 244433322 0000 1222232 11 257889999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhceecCCCeEEECCCCCCCC----CcCCCCCC-ccccc-cCcHHHHHHH-HHHHHHHHH
Q 004823 402 RDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEH----EFIAPDGK-LACVS-YSSTMDMAII-REVFSAIIS 474 (728)
Q Consensus 402 ~~fL~~~~~p~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~----~~~~~~g~-~~~~~-~n~t~d~~~~-r~l~~~~~~ 474 (728)
.+|++ +.+|.+..+.+.|......+ +++.-.-..+. ++.+.... ..... .+...++..+ ..+++.+..
T Consensus 358 ~~~i~-e~~~~v~~a~d~~~~~~~~~----~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~ 432 (641)
T COG3408 358 TEFIR-ELWPSVGAALDWILKGFDFG----FDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALR 432 (641)
T ss_pred HHHHH-HHHHHHHHHHHHHHhcCCcc----ceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHH
Confidence 99997 58999999888887665332 22211111111 01100000 00001 2333444444 448888888
Q ss_pred HHHHhCCCchHHHHHHHHHcCCCC-CCCCCCCCceeeecc-cC-----CCCcCCCCccccccccCCCCccCCCCCHHHHH
Q 004823 475 AAEVLEKNEDALVEKVLKSLPRLR-PTKIAEDGSIMEWAQ-DF-----KDPEVHHRHLSHLFGLFPGHTITIEKNPDLCK 547 (728)
Q Consensus 475 a~~~L~~~~~~~~~~w~~~~~~L~-p~~i~~~G~l~ew~~-~~-----~~~~~~hrh~shL~~l~P~~~i~~~~~p~l~~ 547 (728)
+++.|+ + .+..++|.+++++|. -+.. ..|.. .+ ...+..-|-.+-..+..|+..|. +++.+
T Consensus 433 ~a~ll~-~-~~~~~~~~~~a~~l~~~F~~------~fw~~~~f~dl~~~~~~~~~r~~~~~a~~l~~~gi~---~~~~~- 500 (641)
T COG3408 433 LANLLG-D-EEDAARLEKIARRLKESFEA------KFWNPTGFYDLALDDKDVPIRPNFSNAIHLLYTGIV---DPERA- 500 (641)
T ss_pred HHHHhc-c-cccHHHHHHHHHHHHHHHHH------HhhCccchHhhhccCCCcccCccceecccccccccC---chHHH-
Confidence 889998 4 455677877777776 2211 11111 01 00122222222111112222232 22222
Q ss_pred HHHHHH-----HHh-------------CC---CCCCch--HHHHHHHHHhcCChh-HHHHHHHHHHhccCCcccccCCCC
Q 004823 548 AAEKTL-----QKR-------------GE---EGPGWS--ITWKTALWARLHDQE-HAYRMVKRLFNLVDPEHEKHFEGG 603 (728)
Q Consensus 548 aa~~tl-----~~r-------------~~---~~sgws--~~~~~~~aARLgd~e-~A~~~l~~~~~~~~~~~~~~~~~g 603 (728)
++.+-+ ..+ +. .++-|. .++.+.-+-|.|..+ ++.+.+..++...+. +
T Consensus 501 ~~~~l~e~~lltp~GlRTLS~~dp~Y~p~yYH~GtVWP~~~gifv~g~~r~G~~~~~~~~~~~~~~~~a~~--------~ 572 (641)
T COG3408 501 VIIRLAEEDLLTPWGLRTLSPDDPRYNPMYYHNGTVWPHDTGIFVLGLRRYGLKDIQALELFDGLFSSASP--------G 572 (641)
T ss_pred HHHHHHHHhccCCccccccCCCCCCcCCCcccCCCcccchHHHHHHHHHHcCcccHHHHHHHHHHhhhccc--------C
Confidence 222111 111 11 234454 455556677888888 888888888764322 2
Q ss_pred cccccccC---C-CCccccchhh---HHHHHHHHhhhccCCeeEeCCCCCcccccCceeeceEeecc
Q 004823 604 LYSNLFAA---H-PPFQIDANFG---FTAAVAEMLVQSTLNDLYLLPALPWDKWSSGCVKGLKARGG 663 (728)
Q Consensus 604 ~~~nl~~~---h-~pfqidgn~g---~~agi~emLlqs~~g~i~llPalP~~~W~~gs~~gL~arG~ 663 (728)
..|-+|+. | |--++..... ...++.++++--..+..+++|. | ..|+...++ |+.||+
T Consensus 573 ~~pE~f~g~~~~~P~gc~~QAWS~a~~l~~~~~~~lg~~p~~~~~~~~-p-~~~~~~~~~-~~~~~~ 636 (641)
T COG3408 573 RIPELFDGDSPNRPKGCYPQAWSSAEILRSLLQGLLGIKPDGFRLFKT-P-ESLKIVKLS-LKVRGK 636 (641)
T ss_pred CCcccccccCCCCCCCcchhhhhHHHHHHHHHHHHhCCCcCcccccCC-C-ccccceEEE-EEecce
Confidence 12334432 2 2222222111 1112333333333333388888 9 999999998 998887
No 15
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=96.04 E-value=4.5 Score=47.55 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHh---ce-ecCCCeEEECCCCCCCCCcCCC-CCCc--ccccc
Q 004823 384 GGAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW---LI-EGHDGYLETNPSTSPEHEFIAP-DGKL--ACVSY 456 (728)
Q Consensus 384 ~~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~---l~-~~~~G~~~~~ps~sPE~~~~~~-~g~~--~~~~~ 456 (728)
+..|....+.+||++|+|..|++ +.+|.|+++.+-|.+- .+ .++||-+..+ .+ -.+.+. .|.. .+..-
T Consensus 349 AtLWfi~al~~Y~~~tgD~~~l~-~l~p~l~~ii~~y~~G~~~~i~~d~dGLi~~g---~~-lTWMDa~~g~~~~tPR~G 423 (575)
T TIGR01561 349 ASLWAIHAIDKTFAYSQDFLFIR-DVVDKVLDIIDNYCAGNDFAIGMDNDLIFHKG---AP-LTWMDAKVDERAVTPRAG 423 (575)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHhcCCCcEEEECCCccEeCC---CC-CCCCCCCCCCccCCCCCC
Confidence 36899999999999999999996 6899999999877651 11 1223432222 11 122210 1111 11112
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHhCCC
Q 004823 457 SSTMDMAIIREVFSAIISAAEVLEKN 482 (728)
Q Consensus 457 n~t~d~~~~r~l~~~~~~a~~~L~~~ 482 (728)
-+.--|+++...|+.+.++++.+|.+
T Consensus 424 ~~VEInALwYnAL~~~a~la~~~g~~ 449 (575)
T TIGR01561 424 AACEINALWYNALKTAEFLGNELGED 449 (575)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 45677888889999999999999854
No 16
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=96.01 E-value=0.013 Score=46.15 Aligned_cols=41 Identities=32% Similarity=0.473 Sum_probs=23.7
Q ss_pred CCCCcccccCceeeceEeecc-EEEEEEEeCCeEEEEEEEeCCCCCcc
Q 004823 643 PALPWDKWSSGCVKGLKARGG-ETVSICWKDGDLHEVGIYSNYSNNDH 689 (728)
Q Consensus 643 PalP~~~W~~gs~~gL~arG~-~~V~~~w~~g~l~~~~i~s~~~~~~~ 689 (728)
|.|| ++|+..+|+ +++||. +.|.+ ...++ ++++.+.. ..++
T Consensus 1 P~LP-~~w~~l~F~-~~~rg~~l~v~i--~~~~v-~v~~~~g~-~~l~ 42 (54)
T PF03633_consen 1 PRLP-KQWSSLSFR-LRYRGHWLEVEI--THEKV-TVTLLSGD-APLT 42 (54)
T ss_dssp -----TT-SEEEEE-EEETTEEEEEEE--ETTEE-EEEEEESS---EE
T ss_pred CcCC-CccCEeEEE-EEECCEEEEEEE--ECCEE-EEEEccCC-ccEE
Confidence 8999 999999998 999998 45555 46664 45555443 4655
No 17
>PF03636 Glyco_hydro_65N: Glycosyl hydrolase family 65, N-terminal domain ; InterPro: IPR005196 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The family of glycosyl hydrolases (GH65 from CAZY) containing this domain includes vacuolar acid trehalase and maltose phosphorylase. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. This domain is believed to be essential for catalytic activity [] although its precise function remains unknown.; GO: 0003824 catalytic activity, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 1H54_A.
Probab=95.53 E-value=0.27 Score=51.62 Aligned_cols=61 Identities=20% Similarity=0.389 Sum_probs=40.9
Q ss_pred CCCCCCeEEEEeccccEEEEEEEE---CC--EEEEEEEEEecCC-CEEEEEE--Ec-CCC-CceEEEEEeccC
Q 004823 36 KYAEETYRRELDLNTATARVKYSV---GN--VEFTREHFSSNPD-QVIVTKI--SG-SES-GSLSFNVSLDSL 98 (728)
Q Consensus 36 ~~~~~~Y~R~LDl~~gv~~v~~~~---~g--~~~~re~f~S~pd-~viv~~i--~~-~~~-~~l~~~~~l~~~ 98 (728)
.+. +|+|.|||.+|+.+.+|.. +| +.++-+.|||..+ +++++++ ++ +.. +.|.+.-.++..
T Consensus 93 ~i~--~~~r~LDm~~G~l~r~~~~~~~~G~~~~i~~~rfvS~~~~~l~~~~~~it~l~~~~g~i~i~~~id~~ 163 (255)
T PF03636_consen 93 EIS--SYRRTLDMRTGILTRSFVWRTPSGRKIKIESERFVSMADPHLAAIRYEITPLNFDDGEITIESGIDGD 163 (255)
T ss_dssp EEE--EEEEEEETTTTEEEEEEEEE-ETTEEEEEEEEEEE-SSSTTEEEEEEEEEE-SSS-EEEEE--EEE--
T ss_pred Ccc--ceEEEEEcccEEEEEEEEEEECCCCEEEEEEEEEEcCCCCeEEEEEEEEEECCCCceEEEEEEEeeCC
Confidence 466 8999999999999977655 33 5678889999998 4666555 55 223 577777677554
No 18
>PRK10137 alpha-glucosidase; Provisional
Probab=94.95 E-value=12 Score=45.39 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecCCCeE
Q 004823 387 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYL 432 (728)
Q Consensus 387 wla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~~G~~ 432 (728)
-.|..+|++|+-|+|++||+ +.||-|...-++|..+--.+.+|..
T Consensus 421 L~a~av~~vy~~t~d~~fl~-~lyPkL~a~h~Ww~~~RD~dg~Gl~ 465 (786)
T PRK10137 421 LAAWSVMEVYNVTQDKAWLA-EMYPKLVAYHDWWLRNRDHNGNGVP 465 (786)
T ss_pred HHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHHHhcCCCCCCcee
Confidence 33445688899999999997 6999999999999987655556643
No 19
>PRK13271 treA trehalase; Provisional
Probab=91.86 E-value=5.9 Score=46.36 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHh
Q 004823 387 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 423 (728)
Q Consensus 387 wla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~ 423 (728)
-++.++..|++.|+| +||+ +.+|.|+.=-+||.+-
T Consensus 214 ~l~~Mv~~~~~~~~~-~~l~-~~lp~l~kEy~~Wm~~ 248 (569)
T PRK13271 214 FFALMVELLAQHEGD-AALK-QYLPQMQKEYAYWMEG 248 (569)
T ss_pred hHHHHHHHHHhcCcH-HHHH-HHHHHHHHHHHHHhCC
Confidence 677888899999988 5996 6899999999999973
No 20
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=90.05 E-value=1.4 Score=50.35 Aligned_cols=192 Identities=15% Similarity=0.172 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCccccCCCCCCCCCCCcccccc--cccccccc--cCCCchhhhHHHHHHHHHhhHH
Q 004823 268 VELLFQFGRYLLISSSRPGTQVANLQGIWNEDLSPTWDSAPHVNIN--LEMNYWQS--LPCNLSECQEPLFDFLTYLSIN 343 (728)
Q Consensus 268 ~~l~f~~grYllisssR~g~~p~~LqG~W~~~~~~~W~g~y~~niN--~qm~ywp~--~~~nlpE~~~pll~~~~~~l~~ 343 (728)
..++| -+.|.|-|++= --|.|-.|+|-.-. |++..+ .-+.+... ...-.||+.+..+++..+..+.
T Consensus 323 kdal~-n~lyiLts~tW--ld~~G~FaV~E~~~-------~~~y~~tig~~~~~GsfgllllfPeLek~~~~~f~~~i~~ 392 (721)
T COG4354 323 KDALF-NSLYILTSNTW--LDKDGRFAVYECPF-------YTWYESTIGDVRLYGSFGLLLLFPELEKSVMRAFARAIPK 392 (721)
T ss_pred HHHHH-HHHHHHhhccc--ccCCCceEEEeccc-------ccchhcccceeEecCCchHHHHhHHHHHHHHHHHHHhccc
Confidence 33455 56688877552 24556677765422 222222 22233332 2334588888888777665553
Q ss_pred HHHHHHHHcCC---------CceEEcccCC----cCCCCCCCCCCcccccCccCHHHHHHHHHHHHHhcCCHHHHhhhhH
Q 004823 344 GSKTAQVNYLA---------SGWVIHHKTD----IWAKSSADRGKVVWALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAY 410 (728)
Q Consensus 344 ~r~~A~~~yG~---------~G~~~~~~td----~w~~~~p~~~~~~~~~w~~~~awla~~~w~yy~~TgD~~fL~~~~~ 410 (728)
.--. .+..|+ ++++ ||.-. .|..+.- +.......|.--+..+...++.+|.||+|.+||+ ..|
T Consensus 393 eD~~-~~v~gy~~~~~~~k~~~~t-phDLg~~ehs~e~~iy-~t~~d~~~wkDlgp~fVLlvYrdf~~T~D~eFL~-e~y 468 (721)
T COG4354 393 EDTE-YRVIGYAFPEAERKKDPAT-PHDLGPNEHSIEKPIY-GTYQDPNLWKDLGPDFVLLVYRDFKFTNDREFLK-EVY 468 (721)
T ss_pred cCCc-eeeeeeccchhhccCCCCC-CcccCccccchhcccc-cccCCchhhhhcCCcEEeeehhhhhhcccHHHHH-HHH
Confidence 2111 111222 1222 22211 1221100 0111122454446677889999999999999997 589
Q ss_pred HHHHHHHHHHHHhceecCCCeEEECCCCCCCCCcCCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHhCC
Q 004823 411 PLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYSSTMDMAIIREVFSAIISAAEVLEK 481 (728)
Q Consensus 411 p~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n~t~d~~~~r~l~~~~~~a~~~L~~ 481 (728)
|.++++.+.-..+- .+.||- -..+-.|.+.+ |+. -+---.+|..+|.-..+..++++++.|+.
T Consensus 469 ~~iv~~iD~~~~~d-~d~Dgi--P~~~g~~d~~f---Da~--~i~G~ssy~~sl~iaal~A~l~is~~l~~ 531 (721)
T COG4354 469 PVIVEAIDWLKRFD-QDNDGI--PENSGAMDNTF---DAT--RIQGHSSYCGSLFIAALIAALEISKYLLD 531 (721)
T ss_pred HHHHHHHHHHHhhc-ccCCCC--CcccCCccccc---ccc--eeechhhhhhHHHHHHHHHHHHHHHHHhh
Confidence 99999988654332 222441 00111223332 111 11123467777777777777888877754
No 21
>PRK13272 treA trehalase; Provisional
Probab=85.92 E-value=33 Score=40.07 Aligned_cols=36 Identities=11% Similarity=0.149 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHh
Q 004823 386 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDW 423 (728)
Q Consensus 386 awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~ 423 (728)
.-++.++..||+.|+|..| + +.+|.|+.=-+||.+-
T Consensus 214 P~l~~Mv~~~~~~t~d~~~-~-~~lp~l~kEy~~Wm~~ 249 (542)
T PRK13272 214 PFFSYMVELQAGVEGDAAY-Q-RYLPQLQKEYAYWMQG 249 (542)
T ss_pred hhHHHHHHHHHHhcChHHH-H-HHHHHHHHHHHHHcCC
Confidence 3677889999999999987 4 6899999999999973
No 22
>PLN02567 alpha,alpha-trehalase
Probab=75.60 E-value=5 Score=46.97 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHH
Q 004823 386 AWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 422 (728)
Q Consensus 386 awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~ 422 (728)
.-++.+++.+|+.|+|++||+ +.+|.|..==+||.+
T Consensus 206 Plla~mV~~~~~~t~d~~~l~-~~lp~L~~E~~~W~~ 241 (554)
T PLN02567 206 PLLSAMVLAVYAATKDVELVR-RALPALLKEHAFWTS 241 (554)
T ss_pred HHHHHHHHHHHHhcCcHHHHH-HHHHHHHHHHHHHhc
Confidence 367788899999999999997 689999998999987
No 23
>PRK13270 treF trehalase; Provisional
Probab=70.86 E-value=2.2e+02 Score=33.48 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=49.1
Q ss_pred ccccccccc-------CCCchhhhHHHHHHHHHhhHHHHHHHHHHcCC--CceEEcccCCcCCCCCCCCCCcccccCccC
Q 004823 314 LEMNYWQSL-------PCNLSECQEPLFDFLTYLSINGSKTAQVNYLA--SGWVIHHKTDIWAKSSADRGKVVWALWPMG 384 (728)
Q Consensus 314 ~qm~ywp~~-------~~nlpE~~~pll~~~~~~l~~~r~~A~~~yG~--~G~~~~~~td~w~~~~p~~~~~~~~~w~~~ 384 (728)
-||+||-.+ .+++.++++.+++-...+++ + ||+ .|-..- -.+.+-|
T Consensus 170 rE~YYWDSYwi~~GLl~sg~~~~a~~mi~Nf~~li~-------~-yGfIPNG~R~Y----Yl~RSQP------------- 224 (549)
T PRK13270 170 SETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIE-------N-YGHIPNGNRTY----YLSRSQP------------- 224 (549)
T ss_pred ccchhhhHHHHHHHhhhcCcHHHHHHHHHHHHHHHH-------H-cCcCcCCchhc----cccCCCC-------------
Confidence 377777655 45666666666554444433 3 675 443211 1222222
Q ss_pred HHHHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHH
Q 004823 385 GAWLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 422 (728)
Q Consensus 385 ~awla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~ 422 (728)
.-++.++..|++ .|.+||+ +.+|.|++=-+||.+
T Consensus 225 -P~l~~Mv~~y~~--~~~~~~~-~~lp~l~~E~~fWm~ 258 (549)
T PRK13270 225 -PVFALMVELFEE--DGVRGAR-RYLDHLKMEYAFWMD 258 (549)
T ss_pred -HhHHHHHHHHHh--cCHHHHH-HHHHHHHHHHHHHcC
Confidence 255666766665 5788997 689999999999997
No 24
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=65.89 E-value=5.3 Score=46.40 Aligned_cols=35 Identities=37% Similarity=0.522 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHH
Q 004823 387 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLD 422 (728)
Q Consensus 387 wla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~ 422 (728)
-++.+++++|+.|+|++||+ +.+|.|.+=-+||.+
T Consensus 183 lla~mV~~~y~~t~d~~~l~-~~lp~L~ke~~fW~~ 217 (512)
T PF01204_consen 183 LLAQMVREYYEATKDKAFLR-EALPALEKEYEFWMD 217 (512)
T ss_dssp -HHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHhcCCHHHHH-HHHHHHHHHHHHHCC
Confidence 56788999999999999997 689999999999994
No 25
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=52.63 E-value=25 Score=41.10 Aligned_cols=41 Identities=32% Similarity=0.357 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecC
Q 004823 387 WLCTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGH 428 (728)
Q Consensus 387 wla~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~ 428 (728)
-++.++++||+.|+|.+||+ +++|.|..=-.||.+.=..+.
T Consensus 240 llt~Mv~~~y~~t~~~~~~~-~~l~tl~kEy~fw~~~~~~~~ 280 (600)
T KOG0602|consen 240 LLTGMVYEYYEATNDEQFLK-RALPTLIKEYEFWTNNRTEDV 280 (600)
T ss_pred hhhhhHHHhhhccCcHHHHH-HHHHHHhhheecccCCCcccc
Confidence 56677899999999999997 699999988899988766554
No 26
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=49.43 E-value=2.8e+02 Score=36.25 Aligned_cols=38 Identities=3% Similarity=0.059 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCC-HHHH---------------------hhhhHHHHHHHHHHHHH
Q 004823 385 GAWLCTHLWEHYNYTMD-RDFL---------------------EKRAYPLLEGCASFLLD 422 (728)
Q Consensus 385 ~awla~~~w~yy~~TgD-~~fL---------------------~~~~~p~l~e~A~F~~~ 422 (728)
.-|..+.+.+|+++++| .++| .+..+|+|+|+.+-+.+
T Consensus 1093 ~lWfi~AIqdY~~~~~dg~~iL~~~v~R~fp~Ddt~~~~~~~~~~~l~~~iqeIl~~h~~ 1152 (1464)
T TIGR01531 1093 AWFWLQCIQDYVEIVPNGEKILKDPVRRIYPDDDSIPVDDGRADQYLFEVIYEALQKHFQ 1152 (1464)
T ss_pred HHHHHHHHHHHHHHcCCHHHhhhccccccccccccccccchhHHHHHHHHHHHHHHHHHc
Confidence 57999999999999999 4554 33458899999988874
No 27
>PF12439 GDE_N: Glycogen debranching enzyme N terminal; InterPro: IPR024742 This domain is found in bacteria and archaea glycogen debranching enzyme, and is typically between 218 and 229 amino acids in length. Glycogen debranching enzyme catalyses the debranching of amylopectin in glycogen. This is done by transferring three glucose subunits of glycogen from one parallel chain to another. This has the effect of enabling the glucose residues to become more accessible for glycolysis [].
Probab=40.51 E-value=1.6e+02 Score=30.24 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=42.1
Q ss_pred eEEEEeccccEEEEEEEECCEEEEEEEEEecCCCEEEEEEEc-CCCCceEEEEE
Q 004823 42 YRRELDLNTATARVKYSVGNVEFTREHFSSNPDQVIVTKISG-SESGSLSFNVS 94 (728)
Q Consensus 42 Y~R~LDl~~gv~~v~~~~~g~~~~re~f~S~pd~viv~~i~~-~~~~~l~~~~~ 94 (728)
|-++-+++ ..-.-.|..+|+.++++.|...-.|.++|+++- +.+.++.+.|.
T Consensus 75 ~L~~F~~~-~~P~w~y~~~~~~l~k~i~M~~g~Nt~~i~Y~l~~~~~~~~L~l~ 127 (223)
T PF12439_consen 75 YLESFRLE-PLPVWRYRVGDVVLEKRIFMVHGENTTVIRYRLLNGSEPVTLRLR 127 (223)
T ss_pred eeeEEEcC-CCeEEEEEECCEEEEEEEEEECCCCEEEEEEEEccCCCceEEEEE
Confidence 77888898 889999999999999999999999999988873 33344444443
No 28
>KOG2119 consensus Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=39.74 E-value=54 Score=38.96 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCCHHHHhhhhHHHHHHHHHHHHHhceecCCCeEEECCCCCCCCCcCCCCCCccccccC-cHHHHHHHHH
Q 004823 389 CTHLWEHYNYTMDRDFLEKRAYPLLEGCASFLLDWLIEGHDGYLETNPSTSPEHEFIAPDGKLACVSYS-STMDMAIIRE 467 (728)
Q Consensus 389 a~~~w~yy~~TgD~~fL~~~~~p~l~e~A~F~~~~l~~~~~G~~~~~ps~sPE~~~~~~~g~~~~~~~n-~t~d~~~~r~ 467 (728)
...+|.-|-.|||..||+ ..||....+.+..+.|= +|.|| .|-..--|...| +++.+.+ ++|==.+.-.
T Consensus 563 VLqvYRD~~~tgd~~flk-~~wpsv~~ime~l~~fD-KD~DG--mIEN~GfpDQTY------D~W~~tGvSAYCGgLWlA 632 (879)
T KOG2119|consen 563 VLQVYRDYVATGDEKFLK-AVWPSVYAIMEYLEQFD-KDNDG--MIENEGFPDQTY------DAWSMTGVSAYCGGLWLA 632 (879)
T ss_pred EEEEEeeeEEeccHHHHH-HHHHHHHHHHHHHHhhc-ccCCc--ccccCCCCCccc------cceEEecchhhhhHHHHH
Confidence 445566677899999997 68999999987766652 34366 442233333332 3444444 4777788888
Q ss_pred HHHHHHHHHHHhCCC
Q 004823 468 VFSAIISAAEVLEKN 482 (728)
Q Consensus 468 l~~~~~~a~~~L~~~ 482 (728)
.|+.+++++..+|.+
T Consensus 633 ALqa~~amA~~~g~~ 647 (879)
T KOG2119|consen 633 ALQAASAMARQIGDP 647 (879)
T ss_pred HHHHHHHHHHHhCCh
Confidence 999999999999865
No 29
>COG3537 Putative alpha-1,2-mannosidase [Carbohydrate transport and metabolism]
Probab=36.57 E-value=2.1e+02 Score=33.96 Aligned_cols=142 Identities=10% Similarity=0.031 Sum_probs=77.2
Q ss_pred cCCeEEEeCCcEEEEEEEEeecCCCCCCCCCCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcceeEEecCCCC
Q 004823 156 EDKKLKVEGSDWAVLLLVASSSFDGPFINPSDSKKDPTSESMSALQSIRNLSYSDLYTRHLDDYQKLFHRVSIQLSRSPK 235 (728)
Q Consensus 156 ~~~~l~v~~a~~v~l~~~~~T~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~y~~l~~~H~~~w~~~w~r~~l~l~~~~~ 235 (728)
.+..+.+.-.-+..+.+.+++||.. .+.|+..|++-...+++..+++-.++|++...|..|+=.+.
T Consensus 252 l~a~l~fd~~a~~ql~vk~A~SfVS------------a~~A~aNLd~Epd~sf~~vr~~t~aaWnnaLsrirVe~~~e-- 317 (768)
T COG3537 252 LGAGLTFDFTAGSQLEVKLALSFVS------------ADQARANLDAEPDWSFDRVRAATQAAWNNALSRIRVEGRGE-- 317 (768)
T ss_pred ccceEEecCCCCceEEEEeeeeccc------------HHHHhhcCCcCCCccHHHHHHHHHHHHHHHhhheeeccCCh--
Confidence 3455666532233455666778863 24455555544456899999999999999998876643221
Q ss_pred CcccccCcccccCCCChHHHHhhccCCCChHHHHHHHHHHHHHHHhcCC----CCCCCCCCccccCCCCCCCCCCCcccc
Q 004823 236 DIVTDTCSEENIDTVPSAERVKSFQTDEDPSLVELLFQFGRYLLISSSR----PGTQVANLQGIWNEDLSPTWDSAPHVN 311 (728)
Q Consensus 236 ~~~~~~~~~~~~~~~~t~~rl~~~~~~~d~~L~~l~f~~grYllisssR----~g~~p~~LqG~W~~~~~~~W~g~y~~n 311 (728)
.++| .|.-++|...-..+ .++.-++.-+.|-.-..+.|.++|.
T Consensus 318 ----------------~q~r---------------~FYt~LYrs~l~P~tf~~~dgr~i~~D~~~~tv~~g~~ysnys-- 364 (768)
T COG3537 318 ----------------AQVR---------------TFYTCLYRSLLHPQTFSDVDGRYIGMDLVIHTVKSGHLYSNYS-- 364 (768)
T ss_pred ----------------hHhh---------------hHHHHHHHHhhCcccccccccceeccccceeecCCCccccccc--
Confidence 1222 34355666332221 1122233333333333456777765
Q ss_pred cccccccccccCCCchhhhHHHHHHHHHhhHHHHHHHHH
Q 004823 312 INLEMNYWQSLPCNLSECQEPLFDFLTYLSINGSKTAQV 350 (728)
Q Consensus 312 iN~qm~ywp~~~~nlpE~~~pll~~~~~~l~~~r~~A~~ 350 (728)
.|-.+-+..|=+..=.-+-+.+++......++.
T Consensus 365 ------lWDTyRtl~PL~sli~p~ry~dml~sll~ty~~ 397 (768)
T COG3537 365 ------LWDTYRTLFPLLSLIQPQRYSDMLQSLLNTYEQ 397 (768)
T ss_pred ------hHHHHHhhhhHHHHhhhHHHHHHHHHHHHhhhh
Confidence 588887777644333334444455555555444
No 30
>KOG3778 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.93 E-value=2.5e+02 Score=31.93 Aligned_cols=27 Identities=22% Similarity=0.509 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHhhhcceeEEecCC
Q 004823 206 LSYSDLYTRHLDDYQKLFHRVSIQLSRS 233 (728)
Q Consensus 206 ~~y~~l~~~H~~~w~~~w~r~~l~l~~~ 233 (728)
.+-..|+++|.+-|.++|.. .+++..+
T Consensus 288 ~~~~~l~qeH~d~W~~l~~t-Gf~~~~s 314 (603)
T KOG3778|consen 288 MPAAELLQEHQDLWAQLFST-GFEMKKS 314 (603)
T ss_pred CcHHHHHHHHHHHHHHHhcC-ceeEecc
Confidence 46789999999999999985 5555544
No 31
>PF06627 DUF1153: Protein of unknown function (DUF1153); InterPro: IPR009534 This family consists of several short, hypothetical bacterial proteins of unknown function.; PDB: 2OA4_A 2JRT_A.
Probab=31.13 E-value=45 Score=29.08 Aligned_cols=67 Identities=15% Similarity=0.110 Sum_probs=32.7
Q ss_pred CCeEEECCCCCCCCCcCCCC-CCccccccCcHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHcCC
Q 004823 429 DGYLETNPSTSPEHEFIAPD-GKLACVSYSSTMDMAIIREVFSAIISAAEVLEKNEDALVEKVLKSLPR 496 (728)
Q Consensus 429 ~G~~~~~ps~sPE~~~~~~~-g~~~~~~~n~t~d~~~~r~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~ 496 (728)
.-++|+.|+-||=.....|. ...-++..=-+-=...|+..+-..-||++..+++ .++...|.+..++
T Consensus 8 ~p~~V~~PdG~~~t~adLP~~~t~RWva~RKAaVV~aV~~Glis~~EA~~rY~Ls-~eEf~~W~~av~r 75 (90)
T PF06627_consen 8 GPRYVTGPDGSPLTRADLPPPDTRRWVARRKAAVVRAVRGGLISVEEACRRYGLS-EEEFESWQRAVDR 75 (90)
T ss_dssp SSSEEE-TTS-EEETTTS--SS-S---HHHHHHHHHHHHCTTS-HHHHHHCTTSS-HHHHHHHHHHCCT
T ss_pred CCceEECCCCCccccccCCCcccccchhhHHHHHHHHHHcCCCCHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 34788888887722211111 1111111111111222333333456788889999 8889999887664
No 32
>cd07430 GH15_N Glycoside hydrolase family 15, N-terminal domain. Members of this family are N-terminal domains uniquely found in bacterial and archaeal glucoamylases and glucodextranases. Glucoamylase (glucan 1,4-alpha-glucosidase; 4-alpha-D-glucan glucohydrolase; amyloglucosidase; exo-1,4-alpha-glucosidase; gamma-amylase; lysosomal alpha-glucosidase; EC 3.2.1.3) hydrolyzes beta-1,4-glucosidic linkages of starch, glycogen and malto-oligosaccharides, releasing beta-D-glucose from the non-reducing end. Glucodextranase (glucan 1,6-alpha-glucosidase; exo-1,6-alpha-glucosidase; EC 3.2.1.70) uses an inverting reaction mechanism to hydrolyze alpha-1,6-glucosidic linkages of dextran and related oligosaccharides, releasing beta-D-glucose from the non-reducing end. These N-terminal domains adopt a structure consisting of antiparallel beta-strands, divided into two beta-sheets, with one sheet wrapped by an extended polypeptide, which appears to stabilize the domain. The function of these domains
Probab=30.78 E-value=6.6e+02 Score=26.46 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=30.6
Q ss_pred cEEEEEEEE--CCEEEEEEEEEecCCCEEEEEEEcCC--CCceEEEEEec
Q 004823 51 ATARVKYSV--GNVEFTREHFSSNPDQVIVTKISGSE--SGSLSFNVSLD 96 (728)
Q Consensus 51 gv~~v~~~~--~g~~~~re~f~S~pd~viv~~i~~~~--~~~l~~~~~l~ 96 (728)
=+.++.++. ++.+++.+.|+....+|+++|++=.. ...+.+-+-++
T Consensus 83 ~~~~~~~~~~~~r~~i~k~~~tdP~r~vll~~v~~~~~~~~~~~ly~~~~ 132 (260)
T cd07430 83 LAYRLVNTDKQGRYRLEKEIFTDPDRDVLLMRVRFEALDGGGLRLYVLLA 132 (260)
T ss_pred ceEEEEEecCCCcEEEEEEEeCCCCcCEEEEEEEEEecCCCCeEEEEEEC
Confidence 345566665 45778888999999999997775543 23455544443
No 33
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=27.73 E-value=1.2e+02 Score=25.77 Aligned_cols=64 Identities=20% Similarity=0.409 Sum_probs=45.8
Q ss_pred ccccCceeeceEeeccEEEEEEEe--CCeEEEEEEEeCCCCCcccceeeeeec--CeEEEEEccCCcEEEEeecc
Q 004823 648 DKWSSGCVKGLKARGGETVSICWK--DGDLHEVGIYSNYSNNDHDSFKTLHYR--GTSVKVNLSAGKIYTFNRQL 718 (728)
Q Consensus 648 ~~W~~gs~~gL~arG~~~V~~~w~--~g~l~~~~i~s~~~~~~~~~~~~~~~~--~~~~~~~~~~G~~~~i~~~~ 718 (728)
..|..+.+.|-..-|+|+=.+.|. .|++ .|+..-|+.+. .-|-. .....+.+++|..|.++.-+
T Consensus 12 qs~~~g~leGeV~Ag~f~W~F~W~F~~G~L---~V~PslGRALI----~d~L~RFL~k~DY~LEpGgdY~Ftira 79 (80)
T PF11344_consen 12 QSWQQGCLEGEVSAGGFEWQFQWHFRRGEL---SVEPSLGRALI----QDPLGRFLEKSDYQLEPGGDYSFTIRA 79 (80)
T ss_pred eeccCCcEEEEEEccceEEEEEEEEcCCcE---EEccccchHHH----HhHHHHHHhhcceeccCCCceEEEEec
Confidence 578899999999999999999996 5664 67777776652 11110 12346889999999997643
No 34
>TIGR02564 cas_Csy1 CRISPR-associated protein, Csy1 family. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. This family is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.
Probab=26.48 E-value=3.5e+02 Score=30.23 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=17.2
Q ss_pred ccCCeeEeCCCCCcccccCce
Q 004823 634 STLNDLYLLPALPWDKWSSGC 654 (728)
Q Consensus 634 s~~g~i~llPalP~~~W~~gs 654 (728)
.+.|+.+|||.+| +.|+.-.
T Consensus 217 ~rgG~~yLL~SlP-P~w~~~~ 236 (384)
T TIGR02564 217 SRKGRSYLLPSLP-PVWKNID 236 (384)
T ss_pred hhcCeeeeecCCC-CcCcccc
Confidence 4679999999999 9999743
No 35
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=24.86 E-value=1.1e+02 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=20.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 004823 568 KTALWARLHDQEHAYRMVKRLFN 590 (728)
Q Consensus 568 ~~~~aARLgd~e~A~~~l~~~~~ 590 (728)
.+-...++|+.++|.+.|++.++
T Consensus 7 la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 7 LARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677899999999999999998
No 36
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=24.61 E-value=1.5e+02 Score=19.40 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=18.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 004823 569 TALWARLHDQEHAYRMVKRLFN 590 (728)
Q Consensus 569 ~~~aARLgd~e~A~~~l~~~~~ 590 (728)
...+++.|+.++|.++|....+
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 4457899999999999998765
No 37
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=24.27 E-value=3.2e+02 Score=29.58 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=51.5
Q ss_pred HHHHHhhHHHHHHHHHHcCC-CceEEcccCCcCCCCCCCCCCccc--ccCccCHHHHHHHHHHHHHhcCCHHHHhhhhHH
Q 004823 335 DFLTYLSINGSKTAQVNYLA-SGWVIHHKTDIWAKSSADRGKVVW--ALWPMGGAWLCTHLWEHYNYTMDRDFLEKRAYP 411 (728)
Q Consensus 335 ~~~~~~l~~~r~~A~~~yG~-~G~~~~~~td~w~~~~p~~~~~~~--~~w~~~~awla~~~w~yy~~TgD~~fL~~~~~p 411 (728)
+|+.......+.+.+.+|.- .|..+|..+.. . ...+ .+|.-|.+|.+..+-+-|++..+..--+.....
T Consensus 144 ~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~----~----~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~ 215 (336)
T PF07470_consen 144 KYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQ----G----YADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLE 215 (336)
T ss_dssp HHHHHHHHHHHHHHHHHB-TTTSSBESEEETT----S----SSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCCceeeccCCC----C----CcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHH
Confidence 34444555556666666653 67777633221 1 1112 358889999999999999997553333445666
Q ss_pred HHHHHHHHHHHhceecCCCeE
Q 004823 412 LLEGCASFLLDWLIEGHDGYL 432 (728)
Q Consensus 412 ~l~e~A~F~~~~l~~~~~G~~ 432 (728)
.+++.+++...+ . +++|..
T Consensus 216 ~~~~~~~~l~~~-q-~~~G~w 234 (336)
T PF07470_consen 216 IAKKLADALARY-Q-DEDGLW 234 (336)
T ss_dssp HHHHHHHHHHTT-S-TTTSBE
T ss_pred HHHHHHHHHHhc-C-CCCCCc
Confidence 677777664433 2 357754
No 38
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=23.05 E-value=1.4e+02 Score=20.04 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=19.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 004823 567 WKTALWARLHDQEHAYRMVKRLFN 590 (728)
Q Consensus 567 ~~~~~aARLgd~e~A~~~l~~~~~ 590 (728)
..+.+.-.+|+.++|.+.+++.++
T Consensus 6 ~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 6 NLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCchHHHHHHHHHHH
Confidence 346778889999999999999998
No 39
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=22.79 E-value=69 Score=22.93 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHcCCCceEEcccCCcCC
Q 004823 341 SINGSKTAQVNYLASGWVIHHKTDIWA 367 (728)
Q Consensus 341 l~~~r~~A~~~yG~~G~~~~~~td~w~ 367 (728)
-..|.+.|++ +||.|+ |.+.+-|-
T Consensus 4 k~eAe~~A~~-~GC~G~--H~mg~~WM 27 (34)
T PF12518_consen 4 KAEAEKRAKE-LGCKGA--HKMGDKWM 27 (34)
T ss_pred HHHHHHHHHH-cCCcch--hhccCccc
Confidence 3568889999 799998 44455553
No 40
>PRK09744 DNA-binding transcriptional regulator DicC; Provisional
Probab=20.35 E-value=42 Score=28.28 Aligned_cols=42 Identities=17% Similarity=0.162 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHcCCCCCCCCC--CCCcee
Q 004823 467 EVFSAIISAAEVLEKNEDALVEKVLKSLPRLRPTKIA--EDGSIM 509 (728)
Q Consensus 467 ~l~~~~~~a~~~L~~~~~~~~~~w~~~~~~L~p~~i~--~~G~l~ 509 (728)
.-|....++|+.||++ .+-+.+|.++...+..|++. ..|.|+
T Consensus 8 ~yFGs~~kvA~aLGIs-~~AVsQWGe~VPe~rA~~ie~~T~G~LK 51 (75)
T PRK09744 8 AFFGSKTKLANAAGVR-LASVAAWGELVPEGRAMRLQEASGGELQ 51 (75)
T ss_pred HHhCcHHHHHHHHCCC-HHHHHHHhccCcHHHHHHHHHHhCCcee
Confidence 3456778899999999 88899999998888888755 346665
Done!