Query 004824
Match_columns 728
No_of_seqs 413 out of 2868
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 13:32:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004824.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004824hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04852 Peptidases_S8_3 Peptid 100.0 3.6E-53 7.9E-58 452.6 30.4 303 79-537 1-307 (307)
2 PTZ00262 subtilisin-like prote 100.0 5.1E-49 1.1E-53 437.3 23.2 291 95-578 303-618 (639)
3 cd07479 Peptidases_S8_SKI-1_li 100.0 5.2E-48 1.1E-52 400.8 25.2 243 99-540 1-254 (255)
4 cd05562 Peptidases_S53_like Pe 100.0 4.4E-48 9.5E-53 404.3 24.7 270 102-573 1-274 (275)
5 cd07475 Peptidases_S8_C5a_Pept 100.0 2.3E-47 5E-52 415.1 29.0 312 98-573 2-346 (346)
6 cd07497 Peptidases_S8_14 Pepti 100.0 2.4E-47 5.2E-52 404.6 24.6 286 105-536 1-311 (311)
7 cd07478 Peptidases_S8_CspA-lik 100.0 5.8E-47 1.2E-51 421.5 25.5 404 103-564 1-455 (455)
8 cd07489 Peptidases_S8_5 Peptid 100.0 4.4E-46 9.6E-51 399.0 27.1 293 96-575 3-300 (312)
9 cd07476 Peptidases_S8_thiazoli 100.0 4.5E-46 9.9E-51 388.1 26.2 248 98-542 2-255 (267)
10 cd07474 Peptidases_S8_subtilis 100.0 5.7E-45 1.2E-49 387.6 29.0 287 105-571 1-295 (295)
11 cd07483 Peptidases_S8_Subtilis 100.0 7.1E-45 1.5E-49 384.8 25.6 267 106-537 1-291 (291)
12 cd05561 Peptidases_S8_4 Peptid 100.0 8E-45 1.7E-49 373.5 25.3 234 108-564 1-239 (239)
13 cd07481 Peptidases_S8_Bacillop 100.0 8.5E-44 1.9E-48 372.2 25.1 247 105-537 1-264 (264)
14 cd07493 Peptidases_S8_9 Peptid 100.0 8E-44 1.7E-48 371.9 24.5 243 107-537 1-261 (261)
15 cd07485 Peptidases_S8_Fervidol 100.0 4.5E-43 9.7E-48 368.6 26.6 263 97-535 1-273 (273)
16 cd04857 Peptidases_S8_Tripepti 100.0 9E-43 1.9E-47 376.4 28.9 220 180-539 182-412 (412)
17 cd07487 Peptidases_S8_1 Peptid 100.0 1.1E-42 2.4E-47 363.9 25.8 257 105-537 1-264 (264)
18 cd04077 Peptidases_S8_PCSK9_Pr 100.0 6.3E-42 1.4E-46 356.4 25.4 232 98-538 17-255 (255)
19 cd04847 Peptidases_S8_Subtilis 100.0 2.4E-42 5.3E-47 366.4 21.4 263 108-537 1-291 (291)
20 cd07484 Peptidases_S8_Thermita 100.0 1.1E-41 2.3E-46 355.8 25.8 241 95-539 18-259 (260)
21 cd07496 Peptidases_S8_13 Pepti 100.0 2.2E-41 4.7E-46 358.1 26.2 208 177-535 65-285 (285)
22 cd07490 Peptidases_S8_6 Peptid 100.0 2.2E-41 4.7E-46 352.3 25.6 253 107-537 1-254 (254)
23 cd04842 Peptidases_S8_Kp43_pro 100.0 4.5E-41 9.8E-46 357.3 25.7 277 101-537 2-293 (293)
24 cd07480 Peptidases_S8_12 Pepti 100.0 7.8E-41 1.7E-45 355.7 26.1 265 100-569 2-296 (297)
25 cd07494 Peptidases_S8_10 Pepti 100.0 4.5E-41 9.8E-46 355.8 23.6 253 95-541 10-287 (298)
26 cd07498 Peptidases_S8_15 Pepti 100.0 8.5E-41 1.8E-45 345.2 24.5 240 108-535 1-242 (242)
27 cd07473 Peptidases_S8_Subtilis 100.0 1.8E-40 3.9E-45 346.3 26.3 249 106-537 2-259 (259)
28 cd07477 Peptidases_S8_Subtilis 100.0 8.3E-40 1.8E-44 334.9 24.6 226 107-535 1-229 (229)
29 cd04843 Peptidases_S8_11 Pepti 100.0 4.7E-40 1E-44 344.1 21.5 246 96-537 5-277 (277)
30 PF00082 Peptidase_S8: Subtila 100.0 2.1E-40 4.5E-45 350.0 18.5 275 109-573 1-282 (282)
31 KOG1153 Subtilisin-related pro 100.0 1.5E-40 3.2E-45 344.9 16.3 283 47-538 144-462 (501)
32 cd07491 Peptidases_S8_7 Peptid 100.0 1.5E-39 3.2E-44 335.0 21.8 215 105-519 2-229 (247)
33 cd07482 Peptidases_S8_Lantibio 100.0 3.7E-39 7.9E-44 342.8 24.1 252 107-535 1-294 (294)
34 cd07492 Peptidases_S8_8 Peptid 100.0 2.3E-38 5E-43 322.7 24.2 221 107-537 1-222 (222)
35 cd04059 Peptidases_S8_Protein_ 100.0 4E-39 8.7E-44 343.0 18.5 249 95-537 28-297 (297)
36 cd04848 Peptidases_S8_Autotran 100.0 7.8E-38 1.7E-42 327.4 23.6 243 104-537 1-267 (267)
37 KOG4266 Subtilisin kexin isozy 100.0 1.4E-36 3E-41 322.8 11.1 344 11-573 63-465 (1033)
38 cd07488 Peptidases_S8_2 Peptid 100.0 3.5E-32 7.6E-37 279.4 16.7 194 179-536 33-247 (247)
39 KOG1114 Tripeptidyl peptidase 100.0 6.9E-32 1.5E-36 298.9 19.6 239 182-573 309-557 (1304)
40 cd00306 Peptidases_S8_S53 Pept 100.0 8.3E-31 1.8E-35 268.7 25.2 196 178-535 39-241 (241)
41 COG1404 AprE Subtilisin-like s 99.9 4E-23 8.8E-28 234.7 22.6 249 96-538 130-398 (508)
42 KOG3526 Subtilisin-like propro 99.8 7.9E-21 1.7E-25 193.1 3.5 308 96-594 151-475 (629)
43 cd04056 Peptidases_S53 Peptida 99.7 4.2E-17 9.1E-22 177.8 16.2 101 210-315 82-199 (361)
44 cd02133 PA_C5a_like PA_C5a_lik 99.3 1.4E-11 3E-16 116.4 11.3 113 340-457 25-142 (143)
45 cd02120 PA_subtilisin_like PA_ 99.2 9.2E-11 2E-15 108.4 11.3 110 320-431 2-125 (126)
46 PF06280 DUF1034: Fn3-like dom 98.6 3.1E-07 6.8E-12 82.9 11.4 83 636-719 8-112 (112)
47 PF02225 PA: PA domain; Inter 98.6 7.7E-08 1.7E-12 85.0 5.7 81 342-422 7-101 (101)
48 cd02127 PA_hPAP21_like PA_hPAP 98.5 4.7E-07 1E-11 82.2 8.7 85 349-433 22-117 (118)
49 cd02130 PA_ScAPY_like PA_ScAPY 98.5 1.1E-06 2.5E-11 80.5 11.1 89 342-430 23-120 (122)
50 PF05922 Inhibitor_I9: Peptida 98.5 1.3E-07 2.8E-12 80.2 4.3 67 10-82 16-82 (82)
51 cd04816 PA_SaNapH_like PA_SaNa 98.5 4.1E-07 8.9E-12 83.5 7.8 81 349-429 30-119 (122)
52 cd04818 PA_subtilisin_1 PA_sub 98.5 6E-07 1.3E-11 81.9 8.4 82 349-430 28-116 (118)
53 KOG3525 Subtilisin-like propro 98.4 7.1E-07 1.5E-11 98.7 9.7 160 95-295 22-189 (431)
54 cd02122 PA_GRAIL_like PA _GRAI 98.4 1E-06 2.2E-11 82.3 8.5 83 349-431 45-137 (138)
55 cd02129 PA_hSPPL_like PA_hSPPL 98.4 1.1E-06 2.4E-11 79.4 8.3 83 341-423 20-113 (120)
56 COG4934 Predicted protease [Po 98.4 4.7E-06 1E-10 99.1 14.8 97 210-309 287-395 (1174)
57 cd00538 PA PA: Protease-associ 98.3 1.6E-06 3.6E-11 79.7 7.7 81 349-429 31-123 (126)
58 cd02126 PA_EDEM3_like PA_EDEM3 98.3 2E-06 4.4E-11 79.2 8.0 82 349-430 28-124 (126)
59 cd02132 PA_GO-like PA_GO-like: 98.3 3.9E-06 8.6E-11 78.7 9.9 87 342-430 39-137 (139)
60 cd02124 PA_PoS1_like PA_PoS1_l 98.2 1.3E-05 2.7E-10 74.1 11.0 80 349-429 42-126 (129)
61 cd04817 PA_VapT_like PA_VapT_l 98.2 5.3E-06 1.2E-10 77.1 8.5 80 343-423 38-132 (139)
62 cd04819 PA_2 PA_2: Protease-as 98.1 2.3E-05 5.1E-10 72.3 11.6 86 340-425 22-120 (127)
63 cd02125 PA_VSR PA_VSR: Proteas 98.1 1.2E-05 2.6E-10 74.1 9.3 82 349-430 23-125 (127)
64 cd04813 PA_1 PA_1: Protease-as 98.1 7.9E-06 1.7E-10 74.0 6.9 76 348-424 27-111 (117)
65 cd02123 PA_C_RZF_like PA_C-RZF 98.0 1.6E-05 3.4E-10 75.9 8.0 79 349-427 51-142 (153)
66 cd02128 PA_TfR PA_TfR: Proteas 97.3 0.00039 8.4E-09 67.6 5.6 83 342-424 30-155 (183)
67 cd04815 PA_M28_2 PA_M28_2: Pro 97.0 0.0024 5.2E-08 59.5 7.5 71 360-430 38-132 (134)
68 cd02121 PA_GCPII_like PA_GCPII 95.9 0.012 2.5E-07 59.3 5.6 56 341-396 45-107 (220)
69 cd02131 PA_hNAALADL2_like PA_h 95.9 0.0097 2.1E-07 55.6 4.4 54 342-395 16-75 (153)
70 cd04814 PA_M28_1 PA_M28_1: Pro 95.8 0.027 5.7E-07 52.7 6.7 56 341-396 20-101 (142)
71 cd04820 PA_M28_1_1 PA_M28_1_1: 95.6 0.053 1.1E-06 50.4 7.9 56 341-396 22-97 (137)
72 PF14874 PapD-like: Flagellar- 95.5 0.33 7.1E-06 42.6 12.5 81 636-721 20-100 (102)
73 cd04822 PA_M28_1_3 PA_M28_1_3: 95.4 0.063 1.4E-06 50.8 7.9 56 341-396 20-101 (151)
74 PF10633 NPCBM_assoc: NPCBM-as 95.1 0.12 2.6E-06 43.1 7.9 59 636-694 5-64 (78)
75 KOG2442 Uncharacterized conser 94.9 0.052 1.1E-06 59.2 6.5 75 360-434 94-177 (541)
76 KOG3920 Uncharacterized conser 92.8 0.12 2.7E-06 47.8 3.8 96 341-436 64-175 (193)
77 PF11614 FixG_C: IG-like fold 91.9 1.4 3.1E-05 39.8 9.9 57 637-694 32-88 (118)
78 KOG4628 Predicted E3 ubiquitin 90.7 0.69 1.5E-05 49.5 7.3 75 349-423 63-148 (348)
79 PF06030 DUF916: Bacterial pro 90.0 2.4 5.1E-05 38.7 9.2 70 636-707 27-120 (121)
80 cd04821 PA_M28_1_2 PA_M28_1_2: 89.1 0.77 1.7E-05 43.9 5.6 56 341-396 22-104 (157)
81 COG1470 Predicted membrane pro 86.0 4 8.8E-05 45.0 9.3 72 636-707 397-469 (513)
82 PF00345 PapD_N: Pili and flag 82.5 16 0.00035 33.0 10.7 67 638-706 16-89 (122)
83 KOG1114 Tripeptidyl peptidase 79.3 1.3 2.9E-05 52.3 2.7 51 670-723 636-689 (1304)
84 COG1470 Predicted membrane pro 72.1 54 0.0012 36.6 12.3 71 636-707 284-360 (513)
85 PF00635 Motile_Sperm: MSP (Ma 69.2 24 0.00052 30.9 7.8 52 637-691 19-70 (109)
86 TIGR02745 ccoG_rdxA_fixG cytoc 65.0 24 0.00052 39.6 8.2 56 636-692 346-401 (434)
87 PF07718 Coatamer_beta_C: Coat 63.9 58 0.0012 30.4 9.1 69 637-707 70-139 (140)
88 smart00635 BID_2 Bacterial Ig- 48.8 59 0.0013 27.0 6.2 39 665-708 4-42 (81)
89 PF08821 CGGC: CGGC domain; I 46.1 1.3E+02 0.0028 26.8 8.1 68 212-285 31-104 (107)
90 PF07705 CARDB: CARDB; InterP 44.9 1.8E+02 0.0039 24.5 9.0 52 636-691 19-72 (101)
91 PF12690 BsuPI: Intracellular 38.9 1.6E+02 0.0035 24.7 7.3 52 639-691 3-71 (82)
92 PF07610 DUF1573: Protein of u 34.4 1.4E+02 0.0031 21.7 5.6 43 642-688 2-45 (45)
93 PF02845 CUE: CUE domain; Int 34.1 38 0.00083 24.3 2.4 24 513-536 5-28 (42)
94 PF04744 Monooxygenase_B: Mono 32.3 1.6E+02 0.0034 32.1 7.5 51 636-690 263-335 (381)
95 PRK15098 beta-D-glucoside gluc 27.5 1.5E+02 0.0032 36.1 7.3 53 636-691 667-728 (765)
96 PF08260 Kinin: Insect kinin p 26.7 30 0.00065 15.9 0.5 6 449-454 3-8 (8)
97 PF05753 TRAP_beta: Translocon 26.7 5.5E+02 0.012 25.1 9.8 68 636-707 38-114 (181)
98 PRK15019 CsdA-binding activato 26.6 59 0.0013 30.7 2.9 34 496-530 76-109 (147)
99 PLN03080 Probable beta-xylosid 26.6 1.3E+02 0.0028 36.7 6.5 53 637-690 685-744 (779)
100 PF00927 Transglut_C: Transglu 26.2 4.3E+02 0.0094 22.9 8.7 55 636-691 15-77 (107)
101 TIGR03391 FeS_syn_CsdE cystein 25.3 65 0.0014 30.1 2.9 35 496-531 71-105 (138)
102 PF09244 DUF1964: Domain of un 25.2 1.4E+02 0.0031 23.5 4.1 42 672-713 15-58 (68)
103 PF13940 Ldr_toxin: Toxin Ldr, 23.7 63 0.0014 22.1 1.8 13 504-516 14-26 (35)
104 PF02368 Big_2: Bacterial Ig-l 22.5 57 0.0012 26.9 1.8 38 665-708 4-41 (79)
105 PRK09296 cysteine desufuration 22.3 80 0.0017 29.5 2.9 34 496-530 66-99 (138)
106 PF05506 DUF756: Domain of unk 21.4 4.2E+02 0.0091 22.3 7.0 60 638-708 20-79 (89)
107 PRK13203 ureB urease subunit b 21.2 1.4E+02 0.003 26.2 3.9 16 636-651 18-33 (102)
108 smart00546 CUE Domain that may 21.0 1.3E+02 0.0028 21.6 3.2 24 512-535 5-28 (43)
109 PF04255 DUF433: Protein of un 20.8 77 0.0017 24.4 2.1 39 495-533 10-54 (56)
110 PF02657 SufE: Fe-S metabolism 20.5 97 0.0021 28.4 3.0 35 496-531 57-91 (125)
111 PRK13202 ureB urease subunit b 20.2 1.7E+02 0.0037 25.7 4.2 14 638-651 21-34 (104)
No 1
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=3.6e-53 Score=452.55 Aligned_cols=303 Identities=52% Similarity=0.835 Sum_probs=259.5
Q ss_pred ccccCCCCccccCCCCCCC--CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceee
Q 004824 79 LAVHTTHTSEFLGLSSLSG--AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLI 156 (728)
Q Consensus 79 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kii 156 (728)
++++++++++|+++...+. +|..+++|+||+|||||||||++||+|.+....+++..|.+.|..+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4688999999999977665 47889999999999999999999999999888899999999999998888788999999
Q ss_pred eeeeccccccccCC-CCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeC-CCCChH
Q 004824 157 GARFFNKGLIANNP-KLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWR-HGVYSS 234 (728)
Q Consensus 157 g~~~~~~~~~~~~~-~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~-~g~~~~ 234 (728)
+.++|.++++.... ....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++. ..+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 99999987654322 2233456678899999999999999987666556666677899999999999999998 458899
Q ss_pred HHHHHHHHHHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccc
Q 004824 235 DVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDR 314 (728)
Q Consensus 235 ~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~ 314 (728)
++++||++|++++++|||||||. .....+.+.+..++..+.++|++||+||||+|+...+.++..||+++||+.+
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~--~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~--- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGG--GSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST--- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCC--CCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc---
Confidence 99999999999999999999999 3334566777888888999999999999999988888888999999999821
Q ss_pred eeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCC
Q 004824 315 EFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 315 ~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCce
Q 004824 395 ALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLV 474 (728)
Q Consensus 395 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 474 (728)
+||||+|||.+|
T Consensus 236 --------------------------------------------------------------------~~~di~apG~~i 247 (307)
T cd04852 236 --------------------------------------------------------------------LKPDIAAPGVDI 247 (307)
T ss_pred --------------------------------------------------------------------CccceeeccCce
Confidence 578999999999
Q ss_pred eeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 475 LASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 475 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
++++..... .........|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 248 ~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 248 LAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred eecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999874311 111222368999999999999999999999999999999999999999985
No 2
>PTZ00262 subtilisin-like protease; Provisional
Probab=100.00 E-value=5.1e-49 Score=437.32 Aligned_cols=291 Identities=20% Similarity=0.218 Sum_probs=210.0
Q ss_pred CCCCCC--CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCcee---eeeeeccccccccC
Q 004824 95 LSGAWP--ASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKL---IGARFFNKGLIANN 169 (728)
Q Consensus 95 ~~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~ki---ig~~~~~~~~~~~~ 169 (728)
++.+|+ .+..|+||+|||||||||++||+|.+.-... +....|. ..++. +++.. +.+++|.++
T Consensus 303 ~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n-~~el~Gr----dgiDd--D~nG~vdd~~G~nfVd~----- 370 (639)
T PTZ00262 303 LDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVN-VKELHGR----KGIDD--DNNGNVDDEYGANFVNN----- 370 (639)
T ss_pred chHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcccc-cccccCc----ccccc--ccCCcccccccccccCC-----
Confidence 345565 4567999999999999999999998641000 0000010 00000 11111 112333321
Q ss_pred CCCccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCC
Q 004824 170 PKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGV 248 (728)
Q Consensus 170 ~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~ 248 (728)
...+.|..||||||||||||...++. | +.||||+|+|+.+|+++..+ +..+++++||+||++.|+
T Consensus 371 ------~~~P~D~~GHGTHVAGIIAA~gnN~~---G-----i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA 436 (639)
T PTZ00262 371 ------DGGPMDDNYHGTHVSGIISAIGNNNI---G-----IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREA 436 (639)
T ss_pred ------CCCCCCCCCcchHHHHHHhccccCCC---c-----eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCC
Confidence 13467899999999999999864332 2 38999999999999998766 788999999999999999
Q ss_pred cEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc--------------ccc----CCCceEEeccc
Q 004824 249 DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT--------------LIN----GAPWLLTVGAG 310 (728)
Q Consensus 249 dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~--------------~~~----~ap~vitVgas 310 (728)
+|||||||+. .+...+..++..|.++|++||+||||+|..... ++. ..|++|+|||.
T Consensus 437 ~VINmSlG~~-----~~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv 511 (639)
T PTZ00262 437 HMINGSFSFD-----EYSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNL 511 (639)
T ss_pred CEEEeccccC-----CccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeec
Confidence 9999999983 234566778889999999999999999864321 121 24677888774
Q ss_pred cccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEE
Q 004824 311 TIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVF 390 (728)
Q Consensus 311 t~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~ 390 (728)
..+..
T Consensus 512 ~~d~~--------------------------------------------------------------------------- 516 (639)
T PTZ00262 512 IKDKN--------------------------------------------------------------------------- 516 (639)
T ss_pred cCCCC---------------------------------------------------------------------------
Confidence 31110
Q ss_pred ecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeC
Q 004824 391 ISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAP 470 (728)
Q Consensus 391 ~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~AP 470 (728)
....++.||++|. .++||+||
T Consensus 517 ----------------------------------------------------~~~s~s~~Snyg~-------~~VDIaAP 537 (639)
T PTZ00262 517 ----------------------------------------------------NQYSLSPNSFYSA-------KYCQLAAP 537 (639)
T ss_pred ----------------------------------------------------CcccccccccCCC-------CcceEEeC
Confidence 0012355666663 24699999
Q ss_pred CCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCC
Q 004824 471 GSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDAS 550 (728)
Q Consensus 471 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~ 550 (728)
|++|+++++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.++....
T Consensus 538 G~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~~------- 597 (639)
T PTZ00262 538 GTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSLK------- 597 (639)
T ss_pred CCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCCC-------
Confidence 9999999885 58999999999999999999999999999999999999999998763211
Q ss_pred CCCCCCCCCccC-CCccCccccCCCCcee
Q 004824 551 NNNFPASPLDMG-AGHINPNKALDPGLVY 578 (728)
Q Consensus 551 ~~~~~~~~~~~G-~G~in~~~Al~~~lv~ 578 (728)
. .+| .|+||+.+|++..+-+
T Consensus 598 ------n--~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 598 ------N--KVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ------C--ccccCcEEcHHHHHHHHHhc
Confidence 1 233 3899999999866544
No 3
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=100.00 E-value=5.2e-48 Score=400.78 Aligned_cols=243 Identities=29% Similarity=0.412 Sum_probs=196.3
Q ss_pred CCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCC
Q 004824 99 WPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNS 178 (728)
Q Consensus 99 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~ 178 (728)
|+++++|+||+|||||||||.+||+|.+. +...+|.. ...
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~----------------------------~~~~~~~~------------~~~ 40 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV----------------------------KERTNWTN------------EKT 40 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc----------------------------ccccccCC------------CCC
Confidence 89999999999999999999999999742 00011111 023
Q ss_pred CCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEecccc
Q 004824 179 PRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGL 257 (728)
Q Consensus 179 ~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~ 257 (728)
..|..||||||||||+|+.. .+.||||+|+|+.+|++.+.+ ...++++++|+||++++++|||||||.
T Consensus 41 ~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~ 109 (255)
T cd07479 41 LDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGG 109 (255)
T ss_pred CCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccC
Confidence 45778999999999999742 137999999999999998776 567789999999999999999999998
Q ss_pred CCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc--cccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCC
Q 004824 258 SLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT--LINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYP 335 (728)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~--~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~ 335 (728)
. . +...++..++.++.++|++||+||||+|+...+ .+...+++|+|||..
T Consensus 110 ~--~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~------------------------ 161 (255)
T cd07479 110 P--D--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID------------------------ 161 (255)
T ss_pred C--C--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec------------------------
Confidence 3 2 223455666778889999999999999976443 455678999999832
Q ss_pred CCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccH
Q 004824 336 GNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDG 415 (728)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g 415 (728)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCC----CCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 416 QTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFL----SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 416 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~----~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
..+.++.|||+|++. ...+.+||||+|||.+|+++...
T Consensus 162 ---------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~----------- 203 (255)
T cd07479 162 ---------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK----------- 203 (255)
T ss_pred ---------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-----------
Confidence 123678999999652 11244899999999999987664
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhhCC----CCCHHHHHHHHHhccccCC
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAAHP----DWSPAAIRSALVTTASPLD 540 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~lsp~~ik~~L~~TA~~~~ 540 (728)
+.|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 204 --~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 --GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred --CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 5788999999999999999999999998 7999999999999999864
No 4
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=100.00 E-value=4.4e-48 Score=404.33 Aligned_cols=270 Identities=27% Similarity=0.299 Sum_probs=201.4
Q ss_pred CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCC
Q 004824 102 SNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRD 181 (728)
Q Consensus 102 ~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d 181 (728)
+++|+||+|||||||||..||++.+......+.. ..+... .....|
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~-----------------------~~~~~~-----------~~~~~d 46 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGN-----------------------VNVLGD-----------LDGGSG 46 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcc-----------------------eeeccc-----------cCCCCC
Confidence 5789999999999999999986543211111111 111110 123457
Q ss_pred CCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEeccccCCCC
Q 004824 182 GSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNG 261 (728)
Q Consensus 182 ~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 261 (728)
..+||||||||| .||||+|+|+.+|+. ...+++++||+||+++|++|||||||.. .
T Consensus 47 ~~gHGT~vAgii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~--~ 102 (275)
T cd05562 47 GGDEGRAMLEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYL--N 102 (275)
T ss_pred CCchHHHHHHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEeccccc--C
Confidence 889999999999 489999999999874 4578999999999999999999999983 3
Q ss_pred CCC-hhhHHHHHHHHHHhC-CcEEEEecCCCCCCCC-ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCC
Q 004824 262 IFL-EDDAIAVATFAAMEK-GVLVVASAGNDGPSYW-TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNS 338 (728)
Q Consensus 262 ~~~-~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~-~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~ 338 (728)
.+. ....+..++.++.++ |++||+||||+|.... ..+...|++|+|||.+.+.........+ .
T Consensus 103 ~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s~~~-------------~- 168 (275)
T cd05562 103 EPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGSDPA-------------P- 168 (275)
T ss_pred CCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCcccccccc-------------c-
Confidence 332 334577777788887 9999999999998543 4467889999999965332210000000 0
Q ss_pred CCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHH
Q 004824 339 SPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTI 418 (728)
Q Consensus 339 ~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l 418 (728)
T Consensus 169 -------------------------------------------------------------------------------- 168 (275)
T cd05562 169 -------------------------------------------------------------------------------- 168 (275)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCC-ceeeccCCCCCccccccCcccCCce
Q 004824 419 IDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGS-LVLASWSPISSVAEVQSGLLYSNFN 497 (728)
Q Consensus 419 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~ 497 (728)
.......+.|+++||+.+.. +||||+|||. ++.+.+.. +.|.
T Consensus 169 ----------------------~~~~s~~~~~~~~~p~~~~~--~~~di~Apgg~~~~~~~~~-------------~~~~ 211 (275)
T cd05562 169 ----------------------GGTPSSFDPVGIRLPTPEVR--QKPDVTAPDGVNGTVDGDG-------------DGPP 211 (275)
T ss_pred ----------------------CCCcccccCCcccCcCCCCC--cCCeEEcCCcccccCCCcC-------------Ccee
Confidence 00011345678899987765 9999999975 44544432 6799
Q ss_pred eeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 498 LMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 498 ~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
.++|||||||||||++|||+|++|+|++++||++|++||+++... ..+..||||+||+.+|++
T Consensus 212 ~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~-------------g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 212 NFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEP-------------GYDNASGSGLVDADRAVA 274 (275)
T ss_pred ecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC-------------CCCCCcCcCcccHHHHhh
Confidence 999999999999999999999999999999999999999887432 244589999999999986
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=100.00 E-value=2.3e-47 Score=415.12 Aligned_cols=312 Identities=31% Similarity=0.418 Sum_probs=233.8
Q ss_pred CCCCCC-CCCCcEEEEEccCCCCCCCCCCCCCCCCCCC-----CcccccccCCccCcccCCceeeeeeeccccccccCCC
Q 004824 98 AWPASN-YGKGVIIGLVDTGIWPESQSFSDEGMAKVPP-----RWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPK 171 (728)
Q Consensus 98 ~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~ 171 (728)
+|+++. +|+||+|||||||||++||+|.+....+... .+...+..+ ...+++.+++..++|.++.+.
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---- 74 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIG---YGKYYNEKVPFAYNYADNNDD---- 74 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCC---CCcccccCCCeeEcCCCCCCc----
Confidence 688877 9999999999999999999999754332111 111222111 123467788888888765321
Q ss_pred CccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeC--C-CCChHHHHHHHHHHHHCCC
Q 004824 172 LKVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWR--H-GVYSSDVVAAIDQALQDGV 248 (728)
Q Consensus 172 ~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~--~-g~~~~~i~~ai~~a~~~g~ 248 (728)
.....+..+|||||||||+|...+..+ ...+.||||+|+|+.+|+++. . ......+++|++++++.|+
T Consensus 75 ----~~~~~~~~~HGT~vagiiag~~~~~~~-----~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~ 145 (346)
T cd07475 75 ----ILDEDDGSSHGMHVAGIVAGNGDEEDN-----GEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGA 145 (346)
T ss_pred ----cCCCCCCCCcHHHHHHHHhcCCCcccc-----CCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 111457889999999999998754321 123489999999999999973 3 3778889999999999999
Q ss_pred cEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc----------------cccCCCceEEeccccc
Q 004824 249 DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT----------------LINGAPWLLTVGAGTI 312 (728)
Q Consensus 249 dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~----------------~~~~ap~vitVgast~ 312 (728)
+|||||||.. .........+..++..+.++|++||+||||+|..... .+...+++|+||+...
T Consensus 146 ~Vin~S~G~~-~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~ 224 (346)
T cd07475 146 DVINMSLGST-AGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANK 224 (346)
T ss_pred CEEEECCCcC-CCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeeccc
Confidence 9999999995 2222445667777888999999999999999865432 1223456777766320
Q ss_pred cceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEec
Q 004824 313 DREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFIS 392 (728)
Q Consensus 313 ~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n 392 (728)
.
T Consensus 225 ~------------------------------------------------------------------------------- 225 (346)
T cd07475 225 K------------------------------------------------------------------------------- 225 (346)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCC
Q 004824 393 NSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGS 472 (728)
Q Consensus 393 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~ 472 (728)
........++.||+|||+...+ +||||+|||.
T Consensus 226 ----------------------------------------------~~~~~~~~~~~~S~~G~~~~~~--~~pdi~apG~ 257 (346)
T cd07475 226 ----------------------------------------------VPNPNGGQMSGFSSWGPTPDLD--LKPDITAPGG 257 (346)
T ss_pred ----------------------------------------------cCCCCCCccCCCcCCCCCcccC--cCCeEEeCCC
Confidence 0012344788999999999876 9999999999
Q ss_pred ceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhh----CCCCCHHH----HHHHHHhccccCCCCCC
Q 004824 473 LVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAA----HPDWSPAA----IRSALVTTASPLDNTLS 544 (728)
Q Consensus 473 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~lsp~~----ik~~L~~TA~~~~~~g~ 544 (728)
+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||++|++||.+.....
T Consensus 258 ~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~~- 323 (346)
T cd07475 258 NIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSE- 323 (346)
T ss_pred CeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCcccccC-
Confidence 99998775 57899999999999999999999997 78999876 7889999998532111
Q ss_pred ccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 545 HIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 545 ~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
. ...++.+.++|+|+||+.+||+
T Consensus 324 -----~-~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 324 -----D-TKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred -----C-CCccCCccccCcchhcHHHhhC
Confidence 0 1456678899999999999985
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-47 Score=404.63 Aligned_cols=286 Identities=33% Similarity=0.382 Sum_probs=189.4
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
|+||+|||||||||++||+|.++.. ..|... |+ +...++...++..+ ....+.|..|
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~------~d---~~~~~~~g~d~~~~----------~~~~~~D~~g 57 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK------FD---YKAYLLPGMDKWGG----------FYVIMYDFFS 57 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc------cC---cCCCccCCcCCCCC----------ccCCCCCccc
Confidence 7999999999999999999975411 011100 00 00111111111111 0124678999
Q ss_pred ChhhHHHHhccCCcCCCCccccc-CcccccccCCCeEEEEEeeeCCC-CChHHHHH-------HHHHHH--HCCCcEEEe
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYA-TGIARGIAPRACVAMYKAIWRHG-VYSSDVVA-------AIDQAL--QDGVDVLSL 253 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~-~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~-------ai~~a~--~~g~dVIN~ 253 (728)
|||||||||||+.....+.+++. ...+.||||+|+|+.+|+|...+ .....++. +++|+. +++++||||
T Consensus 58 HGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~ 137 (311)
T cd07497 58 HGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISN 137 (311)
T ss_pred cchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEe
Confidence 99999999999865433322211 22358999999999999997543 32222332 344443 679999999
Q ss_pred ccccCCCCCCC-----hhhHHHHHHHH-HHhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 254 SLGLSLNGIFL-----EDDAIAVATFA-AMEKGVLVVASAGNDGPSYW--TLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 254 SlG~~~~~~~~-----~~~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~--~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
|||.. ...+ ..+.....+.. +.++|+++|+||||+|+... ..+..++++|+|||++.....+... .
T Consensus 138 S~G~~--~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~-~--- 211 (311)
T cd07497 138 SWGIS--NFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL-F--- 211 (311)
T ss_pred cCCcC--CCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh-h---
Confidence 99983 2211 11222222222 24899999999999998644 3456789999999975321100000 0
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
T Consensus 212 -------------------------------------------------------------------------------- 211 (311)
T cd07497 212 -------------------------------------------------------------------------------- 211 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcc
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVA 485 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 485 (728)
.......+.++.||||||+.+++ +||||+|||++|+++.+......
T Consensus 212 --------------------------------~~~~~~~~~~~~fSs~Gp~~~g~--~kPdv~ApG~~i~s~~~~~~~~~ 257 (311)
T cd07497 212 --------------------------------GYLPGGSGDVVSWSSRGPSIAGD--PKPDLAAIGAFAWAPGRVLDSGG 257 (311)
T ss_pred --------------------------------ccccCCCCCccccccCCCCcccC--CCCceeccCcceEeecccCCCCc
Confidence 00012244789999999998865 99999999999999876532100
Q ss_pred ccccCcccCCceeeccccchhHHHHHHHHHHhhhCC------CCCHHHHHHHHHhcc
Q 004824 486 EVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHP------DWSPAAIRSALVTTA 536 (728)
Q Consensus 486 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~lsp~~ik~~L~~TA 536 (728)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 ---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 ---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 011124799999999999999999999999876 689999999999997
No 7
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=100.00 E-value=5.8e-47 Score=421.46 Aligned_cols=404 Identities=24% Similarity=0.290 Sum_probs=241.6
Q ss_pred CCCCCcEEEEEccCCCCCCCCCCC-CCCCCCCCCcccccccCCccCcccCCceeeeeeeccc-cccc-cCCCCccCCCCC
Q 004824 103 NYGKGVIIGLVDTGIWPESQSFSD-EGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNK-GLIA-NNPKLKVRMNSP 179 (728)
Q Consensus 103 ~~G~Gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~-~~~~-~~~~~~~~~~~~ 179 (728)
++|+||+|||||||||+.||+|.+ ++.+++...|++....+.. .....+...+.+ ..+. .....+.+....
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~ 74 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYTEEIINAALASDNPYDIVPS 74 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCC------CccccCceEEeHHHHHHHHhcCCccccCcC
Confidence 479999999999999999999995 4678999999988765432 111222222221 1111 111223334456
Q ss_pred CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-----------CChHHHHHHHHHHHHC--
Q 004824 180 RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-----------VYSSDVVAAIDQALQD-- 246 (728)
Q Consensus 180 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-----------~~~~~i~~ai~~a~~~-- 246 (728)
.|..||||||||||||+..++.. +.||||+|+|+++|++...+ +..++++.||+|+++.
T Consensus 75 ~D~~GHGThvAGIiag~~~~~~~--------~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~ 146 (455)
T cd07478 75 RDENGHGTHVAGIAAGNGDNNPD--------FKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKAL 146 (455)
T ss_pred CCCCCchHHHHHHHhcCCCCCCC--------ccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHH
Confidence 78999999999999999754322 38999999999999998765 4678999999999974
Q ss_pred ---CCcEEEeccccCCCCCCChhhHHHHHHHHHHhC-CcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEc
Q 004824 247 ---GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEK-GVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTL 322 (728)
Q Consensus 247 ---g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~ 322 (728)
.+.|||||||.. ...+...+.+..++..+..+ |++||+||||+|....+...... ..+ ..-...+.+
T Consensus 147 ~~~~p~VInlSlG~~-~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~---~~~-----~~~~ie~~v 217 (455)
T cd07478 147 ELNKPLVINISLGTN-FGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIV---PNG-----ETKTVELNV 217 (455)
T ss_pred HhCCCeEEEEccCcC-CCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeec---cCC-----ceEEEEEEE
Confidence 378999999985 44555667788888777765 99999999999986544332100 000 000111222
Q ss_pred CCCcEEeeeecCCCCCCCCeeeEEEc--cCCCCCccCc------c--Ccc-eEEEEc-c------CCchhHHHHHHHHcC
Q 004824 323 GNGVQINFKSLYPGNSSPSQVSLAFM--DACDSVTELK------K--VIN-SIVVCR-E------DSSISSQIDNAVAAG 384 (728)
Q Consensus 323 ~~g~~~~g~s~~~~~~~~~~~~lv~~--~~c~~~~~~~------~--~~g-kiv~~~-g------~~~~~~~~~~~~~~G 384 (728)
+.++.-....+|......-.+.++.. +......... + +.+ +|.+.. . ...+..+..+ ...|
T Consensus 218 ~~~~~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~~~~-~~~G 296 (455)
T cd07478 218 GEGEKGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIRFKN-IKPG 296 (455)
T ss_pred CCCCcceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEEccC-CCcc
Confidence 22211111111111110001111110 0000000000 0 001 111110 0 0000001111 1234
Q ss_pred ceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeE-----ec-c-cCCCccccccCCCCCC
Q 004824 385 VLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTV-----IG-T-KPAPMVDSYSSRGPFL 457 (728)
Q Consensus 385 a~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~-----~~-~-~~~~~~a~fSS~GP~~ 457 (728)
..-+.+...... ....+.|+|.-.+...+. .++.. ++..+|+.+.+. ++ . .....++.||||||+.
T Consensus 297 iW~i~~~~~~~~-~g~~~~Wlp~~~~~~~~t----~f~~~--~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~ 369 (455)
T cd07478 297 IWKIRLTGVSIT-DGRFDAWLPSRGLLSENT----RFLEP--DPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR 369 (455)
T ss_pred ceEEEEEeccCC-CceEEEEecCcCcCCCCC----EeecC--CCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC
Confidence 444444443322 111233333222222111 11111 223344443221 11 1 2234699999999999
Q ss_pred CCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhC------CCCCHHHHHHH
Q 004824 458 SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAH------PDWSPAAIRSA 531 (728)
Q Consensus 458 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~------p~lsp~~ik~~ 531 (728)
+.+ +||||+|||++|+++++. +.|..++|||||||||||++|||+|.+ |.|++++||++
T Consensus 370 ~~~--~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~ 434 (455)
T cd07478 370 DGR--IKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTY 434 (455)
T ss_pred CCC--cCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHH
Confidence 876 999999999999999985 689999999999999999999999875 56799999999
Q ss_pred HHhccccCCCCCCccccCCCCCCCCCCCccCCC
Q 004824 532 LVTTASPLDNTLSHIKDASNNNFPASPLDMGAG 564 (728)
Q Consensus 532 L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G 564 (728)
|++||++... ..+++.+||||
T Consensus 435 L~~tA~~~~~------------~~~pn~~~GyG 455 (455)
T cd07478 435 LIRGARRRPG------------DEYPNPEWGYG 455 (455)
T ss_pred HHHhCccCCC------------CCCCCCCCCCC
Confidence 9999998752 23466799998
No 8
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.4e-46 Score=398.96 Aligned_cols=293 Identities=32% Similarity=0.399 Sum_probs=227.5
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
+.+|+.+++|+||+|||||+|||++||+|.+.-. .+.++.+.+++..... .......+
T Consensus 3 ~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~---------------------~~~~~~~~~d~~~~~~-~~~~~~~~ 60 (312)
T cd07489 3 DKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFG---------------------PGCKVAGGYDFVGDDY-DGTNPPVP 60 (312)
T ss_pred hhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCC---------------------CCceeccccccCCccc-ccccCCCC
Confidence 5789999999999999999999999999986411 1112333333332110 00111223
Q ss_pred CCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEec
Q 004824 176 MNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLS 254 (728)
Q Consensus 176 ~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~S 254 (728)
...+.|..+|||||||||+|+..+ .|+ .||||+|+|+.+|++...+ .....++++|++|++++++|||||
T Consensus 61 ~~~~~d~~gHGT~vAgiia~~~~~----~~~-----~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S 131 (312)
T cd07489 61 DDDPMDCQGHGTHVAGIIAANPNA----YGF-----TGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITAS 131 (312)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCCC----Cce-----EEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeC
Confidence 345667799999999999998643 233 8999999999999998665 667778999999999999999999
Q ss_pred cccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 255 LGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW---TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 255 lG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
||.. . .+....+...+.++.++|+++|+||||+|.... ..+...|++|+||+.+
T Consensus 132 ~g~~--~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~-------------------- 188 (312)
T cd07489 132 LGGP--S-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD-------------------- 188 (312)
T ss_pred CCcC--C-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec--------------------
Confidence 9983 2 223366677778888999999999999987542 3355678899998721
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
+.||++||+.+.. .||||+|||.+++++++..
T Consensus 189 ------------------------------------~~~s~~g~~~~~~--~kpdv~ApG~~i~~~~~~~---------- 220 (312)
T cd07489 189 ------------------------------------SYFSSWGPTNELY--LKPDVAAPGGNILSTYPLA---------- 220 (312)
T ss_pred ------------------------------------CCccCCCCCCCCC--cCccEEcCCCCEEEeeeCC----------
Confidence 6789999998866 9999999999999988753
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhhC-CCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccc
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAAH-PDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNK 570 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~ 570 (728)
.+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||............ ...++..++|+|+||+.+
T Consensus 221 -~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~----~~~~~~~~~G~G~vn~~~ 295 (312)
T cd07489 221 -GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSAL----PDLAPVAQQGAGLVNAYK 295 (312)
T ss_pred -CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccc----cCCCCHhhcCcceeeHHH
Confidence 1358999999999999999999999999 9999999999999999987653321100 113566799999999999
Q ss_pred cCCCC
Q 004824 571 ALDPG 575 (728)
Q Consensus 571 Al~~~ 575 (728)
|++..
T Consensus 296 a~~~~ 300 (312)
T cd07489 296 ALYAT 300 (312)
T ss_pred HhcCC
Confidence 99954
No 9
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=100.00 E-value=4.5e-46 Score=388.08 Aligned_cols=248 Identities=27% Similarity=0.319 Sum_probs=203.8
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCC
Q 004824 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMN 177 (728)
Q Consensus 98 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 177 (728)
+|..+++|+||+|||||+|||++||+|.+....+... +.. ...
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~--------------------------~~~-----------~~~ 44 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFT--------------------------YAA-----------AAC 44 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccC--------------------------ccc-----------cCC
Confidence 7999999999999999999999999998642211000 000 012
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHHHHHCCCcEEEecc
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQALQDGVDVLSLSL 255 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~Sl 255 (728)
...|..+|||||||||+|+... .+.||||+|+|+.+|++...+ +...++++||+||+++|++||||||
T Consensus 45 ~~~~~~gHGT~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~ 114 (267)
T cd07476 45 QDGGASAHGTHVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISG 114 (267)
T ss_pred CCCCCCCcHHHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecC
Confidence 3456789999999999987421 137999999999999998654 4477899999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCC
Q 004824 256 GLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYP 335 (728)
Q Consensus 256 G~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~ 335 (728)
|.. .........+..++..+.++|++||+||||+|.....++...|++|+||+..
T Consensus 115 G~~-~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~------------------------ 169 (267)
T cd07476 115 GRL-TQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMD------------------------ 169 (267)
T ss_pred CcC-CCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeec------------------------
Confidence 984 2223345677888888999999999999999988777888899999999842
Q ss_pred CCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccH
Q 004824 336 GNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDG 415 (728)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g 415 (728)
T Consensus 170 -------------------------------------------------------------------------------- 169 (267)
T cd07476 170 -------------------------------------------------------------------------------- 169 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCC
Q 004824 416 QTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSN 495 (728)
Q Consensus 416 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 495 (728)
..+.++.||++|+.. .||||+|||.+|+++.+. +.
T Consensus 170 ---------------------------~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~ 204 (267)
T cd07476 170 ---------------------------DDGLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GE 204 (267)
T ss_pred ---------------------------CCCCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CC
Confidence 112457899999875 578999999999998875 57
Q ss_pred ceeeccccchhHHHHHHHHHHhhhCCC----CCHHHHHHHHHhccccCCCC
Q 004824 496 FNLMSGTSMATPHVAGVAGLLKAAHPD----WSPAAIRSALVTTASPLDNT 542 (728)
Q Consensus 496 y~~~sGTSmAaP~VAG~aALl~~~~p~----lsp~~ik~~L~~TA~~~~~~ 542 (728)
|..++|||||||||||++|||+|++|. ++|++||++|++||+++...
T Consensus 205 ~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 205 VVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 999999999999999999999999886 89999999999999998653
No 10
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=5.7e-45 Score=387.65 Aligned_cols=287 Identities=40% Similarity=0.550 Sum_probs=216.5
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCC----CCccCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNP----KLKVRMNSPR 180 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~----~~~~~~~~~~ 180 (728)
|+||+|||||+||+++||+|.+.. +++.+++..++|......... ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998541 134445555555433111000 0000112345
Q ss_pred CCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCC
Q 004824 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSL 259 (728)
Q Consensus 181 d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~ 259 (728)
|..+|||||||+|+|+..+.. .+.|+||+|+|+.+|++...+ +...++++||+|+++++++|||||||..
T Consensus 60 ~~~~HGT~vAgiiag~~~n~~--------~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~- 130 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVNVG--------TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSS- 130 (295)
T ss_pred CCCCcHHHHHHHHhcCCCccC--------ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCC-
Confidence 688999999999999864422 238999999999999998544 7888999999999999999999999983
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCcc--ccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCC
Q 004824 260 NGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTL--INGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGN 337 (728)
Q Consensus 260 ~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~ 337 (728)
.. ...+.+..++..+.++|+++|+||||+|...... +...+++|+||++....
T Consensus 131 -~~-~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~----------------------- 185 (295)
T cd07474 131 -VN-GPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVAD----------------------- 185 (295)
T ss_pred -CC-CCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccC-----------------------
Confidence 22 1345667778889999999999999998765543 55678999999853110
Q ss_pred CCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHH
Q 004824 338 SSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417 (728)
Q Consensus 338 ~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~ 417 (728)
T Consensus 186 -------------------------------------------------------------------------------- 185 (295)
T cd07474 186 -------------------------------------------------------------------------------- 185 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCCeEEEEeeeeEecccCCCccccccC-CCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCc
Q 004824 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSS-RGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNF 496 (728)
Q Consensus 418 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS-~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 496 (728)
.........|++ +|+....+ +||||+|||.+|++++... ...|
T Consensus 186 -----------------------~~~~~~~~~~~s~~~~~~~~~--~kpdv~apG~~i~~~~~~~-----------~~~~ 229 (295)
T cd07474 186 -----------------------VAEADTVGPSSSRGPPTSDSA--IKPDIVAPGVDIMSTAPGS-----------GTGY 229 (295)
T ss_pred -----------------------cCCCCceeccCCCCCCCCCCC--cCCCEECCcCceEeeccCC-----------CCce
Confidence 001123344444 55555544 9999999999999988753 2578
Q ss_pred eeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCcccc
Q 004824 497 NLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKA 571 (728)
Q Consensus 497 ~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~A 571 (728)
..++|||||||+|||++|||+|++|+|++++||++|++||++....+ ....++..+|+|+||+.+|
T Consensus 230 ~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~---------~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 230 ARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSD---------GVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred EEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCC---------CCcCChhccCcceeccccC
Confidence 99999999999999999999999999999999999999999886543 1222456899999999987
No 11
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=100.00 E-value=7.1e-45 Score=384.83 Aligned_cols=267 Identities=24% Similarity=0.337 Sum_probs=190.8
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCC-CCCCcccccccCCccCcccCCceeeeeeecccccccc-----CC-------CC
Q 004824 106 KGVIIGLVDTGIWPESQSFSDEGMAK-VPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIAN-----NP-------KL 172 (728)
Q Consensus 106 ~Gv~VgVIDtGid~~Hp~f~~~~~~~-~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~-----~~-------~~ 172 (728)
|+|+|||||||||++||+|.+.-... ......+....+.+|.. + +++++|...+... +. ..
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 68999999999999999998641100 00001122222222211 1 3344444321100 00 00
Q ss_pred ccCCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEE
Q 004824 173 KVRMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLS 252 (728)
Q Consensus 173 ~~~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN 252 (728)
+.+...+.+..+|||||||||+|...++ .| +.|+||+|+|+.+|++........++++||+||++.|++|||
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN 146 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVIN 146 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEE
Confidence 1122345578999999999999986433 23 389999999999999875556778899999999999999999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc---cc--------cCCCceEEeccccccceeeeEEE
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT---LI--------NGAPWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~--------~~ap~vitVgast~~~~~~~~~~ 321 (728)
||||. .... ....+..++..+.++|+++|+||||+|..... ++ ...+++|+||+.....
T Consensus 147 ~S~G~--~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~~------- 216 (291)
T cd07483 147 MSFGK--SFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKKY------- 216 (291)
T ss_pred eCCCC--CCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeeccccC-------
Confidence 99997 2222 23456677778899999999999999864321 11 1245677777642110
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
T Consensus 217 -------------------------------------------------------------------------------- 216 (291)
T cd07483 217 -------------------------------------------------------------------------------- 216 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCC
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPI 481 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 481 (728)
....++.||++|+ .+|||+|||.+|+++.+.
T Consensus 217 -----------------------------------------~~~~~~~~Sn~G~-------~~vdi~APG~~i~s~~~~- 247 (291)
T cd07483 217 -----------------------------------------ENNLVANFSNYGK-------KNVDVFAPGERIYSTTPD- 247 (291)
T ss_pred -----------------------------------------CcccccccCCCCC-------CceEEEeCCCCeEeccCc-
Confidence 1124689999997 357999999999998775
Q ss_pred CCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 482 SSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 482 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
+.|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 248 ------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 248 ------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred ------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 58999999999999999999999999999999999999999984
No 12
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-45 Score=373.46 Aligned_cols=234 Identities=30% Similarity=0.394 Sum_probs=190.7
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChh
Q 004824 108 VIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGT 187 (728)
Q Consensus 108 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 187 (728)
|+|||||||||++||+|.++- +..+++.. ....|..+|||
T Consensus 1 V~VavIDsGvd~~hp~l~~~~---------------------------~~~~~~~~-------------~~~~~~~~HGT 40 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV---------------------------IARLFFAG-------------PGAPAPSAHGT 40 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc---------------------------cccccCCC-------------CCCCCCCCCHH
Confidence 689999999999999997541 11111110 12456789999
Q ss_pred hHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC----CChHHHHHHHHHHHHCCCcEEEeccccCCCCCC
Q 004824 188 HTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG----VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIF 263 (728)
Q Consensus 188 hVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g----~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 263 (728)
||||||+|+.... .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||.. .
T Consensus 41 ~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~--~-- 105 (239)
T cd05561 41 AVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGP--P-- 105 (239)
T ss_pred HHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC--C--
Confidence 9999999985321 6999999999999998642 6778899999999999999999999982 2
Q ss_pred ChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCe
Q 004824 264 LEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQ 342 (728)
Q Consensus 264 ~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~ 342 (728)
...+..++..+.++|++||+||||+|... ..++...+++|+||+..
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~------------------------------- 152 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVD------------------------------- 152 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeec-------------------------------
Confidence 34566777889999999999999999753 45677788999998832
Q ss_pred eeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHH
Q 004824 343 VSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYI 422 (728)
Q Consensus 343 ~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 422 (728)
T Consensus 153 -------------------------------------------------------------------------------- 152 (239)
T cd05561 153 -------------------------------------------------------------------------------- 152 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccc
Q 004824 423 KKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGT 502 (728)
Q Consensus 423 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 502 (728)
..+.++.||++|+.. ||+|||.+|+++.+. +.|..++||
T Consensus 153 --------------------~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sGT 191 (239)
T cd05561 153 --------------------ARGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSGT 191 (239)
T ss_pred --------------------CCCCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCCH
Confidence 123568899999864 999999999997764 679999999
Q ss_pred cchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCC
Q 004824 503 SMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAG 564 (728)
Q Consensus 503 SmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G 564 (728)
|||||||||++|||+|++| +++++||++|++||+++... ..+..||||
T Consensus 192 S~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~-------------~~d~~~G~G 239 (239)
T cd05561 192 SFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPP-------------GRDPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCC-------------CcCCCcCCC
Confidence 9999999999999999999 99999999999999987533 244588988
No 13
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=100.00 E-value=8.5e-44 Score=372.20 Aligned_cols=247 Identities=32% Similarity=0.380 Sum_probs=194.2
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
|+||+|||||+||+++||+|.+. |+..... ++...+.+.+. ......+.|..+
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~--------~~~~~~~~d~~~ 53 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDP--------VGNTPLPYDDNG 53 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccC--------CCCCCCCCCCCC
Confidence 89999999999999999999864 1111000 00000001100 001234567889
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH------------CCCcEEE
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ------------DGVDVLS 252 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~------------~g~dVIN 252 (728)
|||||||||+|..... ...||||+|+|+.+|++...++...+++++++++++ .|++|||
T Consensus 54 HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin 124 (264)
T cd07481 54 HGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVIN 124 (264)
T ss_pred chhhhhhheeecCCCC---------CceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEE
Confidence 9999999999875322 127999999999999998877888899999999985 7899999
Q ss_pred eccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCc---cccCCCceEEeccccccceeeeEEEcCCCcEEe
Q 004824 253 LSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWT---LINGAPWLLTVGAGTIDREFEGSLTLGNGVQIN 329 (728)
Q Consensus 253 ~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~---~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~ 329 (728)
||||.. .. ....+..++..+.++|++||+||||++..... .+...|++|+||+.+
T Consensus 125 ~S~G~~--~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~------------------ 182 (264)
T cd07481 125 NSWGGP--SG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATD------------------ 182 (264)
T ss_pred eCCCcC--CC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecC------------------
Confidence 999993 22 23445556667888999999999999865432 556788999999842
Q ss_pred eeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEE
Q 004824 330 FKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAF 409 (728)
Q Consensus 330 g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~ 409 (728)
T Consensus 183 -------------------------------------------------------------------------------- 182 (264)
T cd07481 183 -------------------------------------------------------------------------------- 182 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcccccc
Q 004824 410 INVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQS 489 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 489 (728)
..+.++.||++||....+ +||||+|||.+|+++++.
T Consensus 183 ---------------------------------~~~~~~~~S~~g~~~~~~--~~~dv~ApG~~i~s~~~~--------- 218 (264)
T cd07481 183 ---------------------------------RNDVLADFSSRGPSTYGR--IKPDISAPGVNIRSAVPG--------- 218 (264)
T ss_pred ---------------------------------CCCCCccccCCCCCCCCC--cCceEEECCCCeEEecCC---------
Confidence 223678999999998765 999999999999999875
Q ss_pred CcccCCceeeccccchhHHHHHHHHHHhhhCCC--CCHHHHHHHHHhccc
Q 004824 490 GLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPD--WSPAAIRSALVTTAS 537 (728)
Q Consensus 490 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--lsp~~ik~~L~~TA~ 537 (728)
+.|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 219 ----~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 ----GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred ----CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999 999999999999985
No 14
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8e-44 Score=371.87 Aligned_cols=243 Identities=31% Similarity=0.388 Sum_probs=195.4
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCCh
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHG 186 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 186 (728)
||+||||||||+++||+|.... ..++.++++.++|.+... ....|..+||
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~----------~~~~~~~~HG 50 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN----------NTNYTDDDHG 50 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC----------CCCCCCCCch
Confidence 7999999999999999995210 013456777777765421 1135788999
Q ss_pred hhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC---CChHHHHHHHHHHHHCCCcEEEeccccCCCCCC
Q 004824 187 THTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG---VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIF 263 (728)
Q Consensus 187 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~ 263 (728)
|||||+|+|+.. +.+.||||+|+|+.+|+..... ....+++.|++||.+.|++|||||||.. ...
T Consensus 51 T~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~--~~~ 118 (261)
T cd07493 51 TAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYT--TFD 118 (261)
T ss_pred hhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcC--CCC
Confidence 999999999752 2248999999999999876433 3456788999999999999999999984 221
Q ss_pred C------------hhhHHHHHHHHHHhCCcEEEEecCCCCCC---CCccccCCCceEEeccccccceeeeEEEcCCCcEE
Q 004824 264 L------------EDDAIAVATFAAMEKGVLVVASAGNDGPS---YWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328 (728)
Q Consensus 264 ~------------~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~---~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~ 328 (728)
. ....+..++..+.++|++||+||||+|.. ....+...+++|+|||..
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~----------------- 181 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVD----------------- 181 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEec-----------------
Confidence 1 12356677888899999999999999977 345667789999999832
Q ss_pred eeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEE
Q 004824 329 NFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAA 408 (728)
Q Consensus 329 ~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~ 408 (728)
T Consensus 182 -------------------------------------------------------------------------------- 181 (261)
T cd07493 182 -------------------------------------------------------------------------------- 181 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccc
Q 004824 409 FINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQ 488 (728)
Q Consensus 409 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 488 (728)
..+.++.||++||+.+.+ +||||+|||.++++....
T Consensus 182 ----------------------------------~~~~~~~~S~~G~~~~~~--~~pdi~a~G~~~~~~~~~-------- 217 (261)
T cd07493 182 ----------------------------------ANGNKASFSSIGPTADGR--LKPDVMALGTGIYVINGD-------- 217 (261)
T ss_pred ----------------------------------cCCCCCccCCcCCCCCCC--cCCceEecCCCeEEEcCC--------
Confidence 122568999999998765 999999999999985443
Q ss_pred cCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 489 SGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 489 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
+.|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 218 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 -----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred -----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999984
No 15
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=100.00 E-value=4.5e-43 Score=368.57 Aligned_cols=263 Identities=30% Similarity=0.366 Sum_probs=200.5
Q ss_pred CCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCC
Q 004824 97 GAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRM 176 (728)
Q Consensus 97 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~ 176 (728)
.+|..+++|+||+|+|||||||++||+|.+..... .+. .....+.+... . ....
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~~------~~~~~~~~~~~------~-~~~~ 54 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GYD------PAVNGYNFVPN------V-GDID 54 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Ccc------cccCCcccccc------c-CCcC
Confidence 37999999999999999999999999999751100 000 00000001000 0 0011
Q ss_pred CCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEecc
Q 004824 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSL 255 (728)
Q Consensus 177 ~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~Sl 255 (728)
....|..+|||||||||+|+..+.....|++ .+.|+||+|+|+.+|++...+ +....++++|+||++.|++||||||
T Consensus 55 ~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 132 (273)
T cd07485 55 NDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSW 132 (273)
T ss_pred CCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecC
Confidence 3455778999999999999864432222222 336799999999999998754 7788899999999999999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHhC-------CcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEE
Q 004824 256 GLSLNGIFLEDDAIAVATFAAMEK-------GVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQI 328 (728)
Q Consensus 256 G~~~~~~~~~~~~~~~~~~~a~~~-------Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~ 328 (728)
|. .....+...+..++..+.++ |++||+||||++......+...|++|+||+.+
T Consensus 133 g~--~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~----------------- 193 (273)
T cd07485 133 GG--TGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALD----------------- 193 (273)
T ss_pred CC--CCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEecc-----------------
Confidence 98 33233455667777788877 99999999999988777788889999999843
Q ss_pred eeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEE
Q 004824 329 NFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAA 408 (728)
Q Consensus 329 ~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~ 408 (728)
T Consensus 194 -------------------------------------------------------------------------------- 193 (273)
T cd07485 194 -------------------------------------------------------------------------------- 193 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCC-ceeeccCCCCCcccc
Q 004824 409 FINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGS-LVLASWSPISSVAEV 487 (728)
Q Consensus 409 ~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~ 487 (728)
..+.++.||++|+.. ||+|||. .|+++++....
T Consensus 194 ----------------------------------~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~---- 227 (273)
T cd07485 194 ----------------------------------TNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG---- 227 (273)
T ss_pred ----------------------------------CCCCcCccccCCCce--------EEEeCCCCccccccccccC----
Confidence 123567999999865 9999999 88888764311
Q ss_pred ccCcccCCceeeccccchhHHHHHHHHHHhhhCCC-CCHHHHHHHHHhc
Q 004824 488 QSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPD-WSPAAIRSALVTT 535 (728)
Q Consensus 488 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-lsp~~ik~~L~~T 535 (728)
...+.|..++|||||||+|||++|||+|++|. |+|+|||++|++|
T Consensus 228 ---~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 ---DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11257899999999999999999999999999 9999999999986
No 16
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=100.00 E-value=9e-43 Score=376.42 Aligned_cols=220 Identities=28% Similarity=0.344 Sum_probs=164.7
Q ss_pred CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC---CChHHHHHHHHHHHHCCCcEEEeccc
Q 004824 180 RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG---VYSSDVVAAIDQALQDGVDVLSLSLG 256 (728)
Q Consensus 180 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g---~~~~~i~~ai~~a~~~g~dVIN~SlG 256 (728)
.|+.+|||||||||||+..++. .+.|+||+|+|+.+|+++... +...++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~~--------~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEEP--------ERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCCC--------ceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 4678999999999999853322 238999999999999987532 23457899999999999999999999
Q ss_pred cCCCCCCChhhHHHHHHHH-HHhCCcEEEEecCCCCCCCCcccc---CCCceEEeccccccceeeeEEEcCCCcEEeeee
Q 004824 257 LSLNGIFLEDDAIAVATFA-AMEKGVLVVASAGNDGPSYWTLIN---GAPWLLTVGAGTIDREFEGSLTLGNGVQINFKS 332 (728)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~-a~~~Gi~vV~AAGN~g~~~~~~~~---~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s 332 (728)
.. ........+...+.+ +.++|+++|+||||+|+...++.. .++++|+|||..........
T Consensus 254 ~~--~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------- 318 (412)
T cd04857 254 EA--THWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------- 318 (412)
T ss_pred cC--CCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence 84 221112223334433 457999999999999987665432 46899999995321100000
Q ss_pred cCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeec
Q 004824 333 LYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINV 412 (728)
Q Consensus 333 ~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~ 412 (728)
|.+
T Consensus 319 ----------y~~------------------------------------------------------------------- 321 (412)
T cd04857 319 ----------YSL------------------------------------------------------------------- 321 (412)
T ss_pred ----------ccc-------------------------------------------------------------------
Confidence 000
Q ss_pred ccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcc
Q 004824 413 NDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLL 492 (728)
Q Consensus 413 ~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 492 (728)
.....+.++.||||||+.+++ +||||+|||..|.+.-...
T Consensus 322 ---------------------------~~~~~~~~~~fSSrGP~~dG~--~~pdI~APG~~I~s~p~~~----------- 361 (412)
T cd04857 322 ---------------------------REKLPGNQYTWSSRGPTADGA--LGVSISAPGGAIASVPNWT----------- 361 (412)
T ss_pred ---------------------------ccccCCccccccccCCcccCC--cCceEEeCCCcEEEcccCC-----------
Confidence 011234689999999999977 9999999999998752211
Q ss_pred cCCceeeccccchhHHHHHHHHHHhh----hCCCCCHHHHHHHHHhccccC
Q 004824 493 YSNFNLMSGTSMATPHVAGVAGLLKA----AHPDWSPAAIRSALVTTASPL 539 (728)
Q Consensus 493 ~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~lsp~~ik~~L~~TA~~~ 539 (728)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 ~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15789999999999999999999975 478999999999999999864
No 17
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.1e-42 Score=363.94 Aligned_cols=257 Identities=33% Similarity=0.471 Sum_probs=202.7
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
|+||+|+|||+||+++||+|.+.... . +.+.... .......|..+
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~----~-----------------------~~~~~~~--------~~~~~~~d~~~ 45 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR----F-----------------------ADFVNTV--------NGRTTPYDDNG 45 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc----c-----------------------ccccccc--------cCCCCCCCCCC
Confidence 89999999999999999999864110 0 0111000 01234567789
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC----CCcEEEeccccCC
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD----GVDVLSLSLGLSL 259 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~----g~dVIN~SlG~~~ 259 (728)
|||||||+|+|+..+. .+.+.|+||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||..
T Consensus 46 HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~- 117 (264)
T cd07487 46 HGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAP- 117 (264)
T ss_pred chHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCC-
Confidence 9999999999986432 12248999999999999998876 6778999999999998 999999999984
Q ss_pred CCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC--ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCC
Q 004824 260 NGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW--TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGN 337 (728)
Q Consensus 260 ~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~--~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~ 337 (728)
.........+..++.++.++|++||+||||++.... ..+...+++|+||+...+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~---------------------- 175 (264)
T cd07487 118 PDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP---------------------- 175 (264)
T ss_pred CCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC----------------------
Confidence 222456677888888999999999999999998765 55667899999998542211
Q ss_pred CCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHH
Q 004824 338 SSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQT 417 (728)
Q Consensus 338 ~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~ 417 (728)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCce
Q 004824 418 IIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFN 497 (728)
Q Consensus 418 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 497 (728)
....++.||++||+.+.+ +||||+|||.+|+++.+.... ......+.|.
T Consensus 176 -------------------------~~~~~~~~s~~G~~~~~~--~~~di~apG~~i~~~~~~~~~----~~~~~~~~~~ 224 (264)
T cd07487 176 -------------------------HDDGISYFSSRGPTGDGR--IKPDVVAPGENIVSCRSPGGN----PGAGVGSGYF 224 (264)
T ss_pred -------------------------CCccccccccCCCCCCCC--cCCCEEccccceEeccccccc----cCCCCCCceE
Confidence 012478999999998866 999999999999998654211 0111236789
Q ss_pred eeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 498 LMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 498 ~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
.++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 225 ~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 225 EMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred eccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999985
No 18
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=100.00 E-value=6.3e-42 Score=356.43 Aligned_cols=232 Identities=34% Similarity=0.460 Sum_probs=194.0
Q ss_pred CCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCC
Q 004824 98 AWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMN 177 (728)
Q Consensus 98 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~ 177 (728)
+|..+++|+||+|||||+||+++||+|.++ +...+.+... .
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------~ 57 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------D 57 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC------------C
Confidence 677789999999999999999999999754 1222222221 1
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC-----CCcEE
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD-----GVDVL 251 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~-----g~dVI 251 (728)
...|..+|||||||||+++. .||||+|+|+.+|+++..+ ...++++++|+|+++. +++||
T Consensus 58 ~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~ii 123 (255)
T cd04077 58 PDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVA 123 (255)
T ss_pred CCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEE
Confidence 25678899999999999863 6999999999999998875 6778899999999987 48999
Q ss_pred EeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCCcEEee
Q 004824 252 SLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINF 330 (728)
Q Consensus 252 N~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g 330 (728)
|||||.. . ...+..++..+.++|+++|+||||+|... ...+...|++|+||+.+.
T Consensus 124 n~S~g~~--~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~------------------ 179 (255)
T cd04077 124 NMSLGGG--A----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS------------------ 179 (255)
T ss_pred EeCCCCC--C----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC------------------
Confidence 9999993 3 45566777788999999999999999765 455677899999998431
Q ss_pred eecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEe
Q 004824 331 KSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFI 410 (728)
Q Consensus 331 ~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i 410 (728)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccC
Q 004824 411 NVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSG 490 (728)
Q Consensus 411 ~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 490 (728)
.+.++.||++||.. ||+|||.+|.++....
T Consensus 180 ---------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~--------- 209 (255)
T cd04077 180 ---------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAWIGS--------- 209 (255)
T ss_pred ---------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecccCC---------
Confidence 22468999999875 9999999999987742
Q ss_pred cccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhcccc
Q 004824 491 LLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASP 538 (728)
Q Consensus 491 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~ 538 (728)
.+.|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 210 --~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 --DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred --CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2688999999999999999999999999999999999999999974
No 19
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.4e-42 Score=366.39 Aligned_cols=263 Identities=27% Similarity=0.241 Sum_probs=185.2
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChh
Q 004824 108 VIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGT 187 (728)
Q Consensus 108 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 187 (728)
.+|||||||||.+||+|.+. +.....+... .....|..||||
T Consensus 1 p~VaviDtGi~~~hp~l~~~---------------------------~~~~~~~~~~-----------~~~~~d~~gHGT 42 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPA---------------------------LAEDDLDSDE-----------PGWTADDLGHGT 42 (291)
T ss_pred CEEEEecCCCCCCChhhhhh---------------------------hccccccccC-----------CCCcCCCCCChH
Confidence 37999999999999999854 1111111100 011568899999
Q ss_pred hHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-----CChHHHHHHHHHHHHCC---CcEEEeccccCC
Q 004824 188 HTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-----VYSSDVVAAIDQALQDG---VDVLSLSLGLSL 259 (728)
Q Consensus 188 hVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-----~~~~~i~~ai~~a~~~g---~dVIN~SlG~~~ 259 (728)
||||||++..... ....|+||+|+|+.+|++...| ....++++||+|+++.+ ++|||||||..
T Consensus 43 ~vAgiia~~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~- 113 (291)
T cd04847 43 AVAGLALYGDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSP- 113 (291)
T ss_pred HHHHHHHcCcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCC-
Confidence 9999999764331 1237999999999999998864 45678899999999853 49999999994
Q ss_pred CCCCC--hhhHHHHHHH-HHHhCCcEEEEecCCCCCCCCc------------cccCCCceEEeccccccceeeeEEEcCC
Q 004824 260 NGIFL--EDDAIAVATF-AAMEKGVLVVASAGNDGPSYWT------------LINGAPWLLTVGAGTIDREFEGSLTLGN 324 (728)
Q Consensus 260 ~~~~~--~~~~~~~~~~-~a~~~Gi~vV~AAGN~g~~~~~------------~~~~ap~vitVgast~~~~~~~~~~~~~ 324 (728)
.... ....+..++. .+.++|++||+||||++..... .+..++++|+|||.+.+......
T Consensus 114 -~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~----- 187 (291)
T cd04847 114 -LPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR----- 187 (291)
T ss_pred -CCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc-----
Confidence 2211 1123444443 3568999999999999987543 24567899999996543321000
Q ss_pred CcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccC
Q 004824 325 GVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSS 404 (728)
Q Consensus 325 g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 404 (728)
+.+
T Consensus 188 -------s~~---------------------------------------------------------------------- 190 (291)
T cd04847 188 -------ARY---------------------------------------------------------------------- 190 (291)
T ss_pred -------ccc----------------------------------------------------------------------
Confidence 000
Q ss_pred ccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCc
Q 004824 405 FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSV 484 (728)
Q Consensus 405 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 484 (728)
+.......+.||+|||..... +||||+|||++|.+........
T Consensus 191 -----------------------------------~~~~~~~~~~fs~~Gp~~~~~--~KPDl~apG~~i~~~~~~~~~~ 233 (291)
T cd04847 191 -----------------------------------SAVGPAPAGATTSSGPGSPGP--IKPDVVAFGGNLAYDPSGNAAD 233 (291)
T ss_pred -----------------------------------cccccccCCCccccCCCCCCC--cCCcEEeeCCceeecCCCCCcc
Confidence 000011233499999999866 9999999999998754421100
Q ss_pred -----cccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 485 -----AEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 485 -----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
...........|..++|||||||||||++|||++++|+++|++||++|++||+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 234 GDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00001112368999999999999999999999999999999999999999985
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=100.00 E-value=1.1e-41 Score=355.83 Aligned_cols=241 Identities=36% Similarity=0.494 Sum_probs=200.3
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|..+ +|+||+|||||+||+++||+|.+. ++...+++.+..
T Consensus 18 ~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~~--------- 61 (260)
T cd07484 18 APKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDND--------- 61 (260)
T ss_pred hHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCCC---------
Confidence 36689888 899999999999999999998432 122223332221
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~ 253 (728)
..+.|..+|||||||||++...+.. | +.|+||+|+|+.+|+++..+ +...+++++|+++++.|++||||
T Consensus 62 --~~~~d~~~HGT~vagii~~~~~~~~---~-----~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~ 131 (260)
T cd07484 62 --SDAMDDNGHGTHVAGIIAAATNNGT---G-----VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINL 131 (260)
T ss_pred --CCCCCCCCcHHHHHHHHhCccCCCC---c-----eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 2355788999999999998754322 2 38999999999999998765 77888999999999999999999
Q ss_pred ccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 254 SLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 254 SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
|||.. . ....+..++..+.++|++||+||||+|.....+++..+++|+||+.+.
T Consensus 132 S~g~~--~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------- 185 (260)
T cd07484 132 SLGGG--L---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ--------------------- 185 (260)
T ss_pred cCCCC--C---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC---------------------
Confidence 99993 2 445667777788899999999999999988888889999999998431
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
.+..+.||++|+.. |++|||.+|++..+.
T Consensus 186 ------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------------- 214 (260)
T cd07484 186 ------------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPD------------- 214 (260)
T ss_pred ------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------
Confidence 22567899999754 999999999988765
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccC
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPL 539 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~ 539 (728)
+.|..++|||||||+|||++||+++++| |++.+||++|++||+++
T Consensus 215 ~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 5799999999999999999999999999 99999999999999875
No 21
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-41 Score=358.06 Aligned_cols=208 Identities=32% Similarity=0.395 Sum_probs=167.6
Q ss_pred CCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHH----------HC
Q 004824 177 NSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQAL----------QD 246 (728)
Q Consensus 177 ~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~----------~~ 246 (728)
....+..+|||||||||+|...++ .|+ .||||+|+|+.+|+++..+.+.+++++|++|++ .+
T Consensus 65 ~~~~~~~~HGT~vAgiiaa~~~~~---~~~-----~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~ 136 (285)
T cd07496 65 SGVSPSSWHGTHVAGTIAAVTNNG---VGV-----AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPN 136 (285)
T ss_pred CCCCCCCCCHHHHHHHHhCcCCCC---CCc-----eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCC
Confidence 345567899999999999986532 233 799999999999999887778899999999998 45
Q ss_pred CCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 247 GVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 247 g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
+++|||||||.. ... ...+..++..+.++|++||+||||++... ...+...+++|+||+.+
T Consensus 137 ~~~Iin~S~G~~--~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~-------------- 198 (285)
T cd07496 137 PAKVINLSLGGD--GAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATD-------------- 198 (285)
T ss_pred CCeEEEeCCCCC--CCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccC--------------
Confidence 789999999983 221 45667778888999999999999999876 56677889999999843
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
T Consensus 199 -------------------------------------------------------------------------------- 198 (285)
T cd07496 199 -------------------------------------------------------------------------------- 198 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCcc
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVA 485 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~ 485 (728)
..+.++.||++|+.. ||+|||.+|.+.........
T Consensus 199 -------------------------------------~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~ 233 (285)
T cd07496 199 -------------------------------------LRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPD 233 (285)
T ss_pred -------------------------------------CCCCcccccCCCCCC--------CEEeCCCCccccCCCCcccc
Confidence 123568999999865 99999999998776431110
Q ss_pred --ccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 486 --EVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 486 --~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
..........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 234 ~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 234 SNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred ccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 00111123578999999999999999999999999999999999999976
No 22
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.2e-41 Score=352.26 Aligned_cols=253 Identities=34% Similarity=0.393 Sum_probs=185.5
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCCh
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHG 186 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 186 (728)
||+|||||+|||++||+|.+. +....+|..+. ..+.....|..+||
T Consensus 1 GV~VaviDsGv~~~hp~l~~~---------------------------~~~~~~~~~~~-------~~~~~~~~d~~~HG 46 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGR---------------------------VAQWADFDENR-------RISATEVFDAGGHG 46 (254)
T ss_pred CCEEEEEeCCCCCCCcchhcc---------------------------cCCceeccCCC-------CCCCCCCCCCCCcH
Confidence 799999999999999999764 11111221110 01123455778999
Q ss_pred hhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEeccccCCCCCCChh
Q 004824 187 THTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLED 266 (728)
Q Consensus 187 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 266 (728)
|||||||+|+..+ +...|+||+|+|+.+|++...++...+++++|+|+++.+++|||||||.. ... .
T Consensus 47 T~vAgiia~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~--~~~--~ 113 (254)
T cd07490 47 THVSGTIGGGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGT--YYS--E 113 (254)
T ss_pred HHHHHHHhcCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcC--CCC--C
Confidence 9999999998641 12379999999999999988778889999999999999999999999984 222 4
Q ss_pred hHHHHHHHHHHh-CCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeE
Q 004824 267 DAIAVATFAAME-KGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSL 345 (728)
Q Consensus 267 ~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~l 345 (728)
+.+..++..+.+ +|++||+||||+|......+...+++|+||+.+.+...... .
T Consensus 114 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~---------------s---------- 168 (254)
T cd07490 114 DPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWF---------------S---------- 168 (254)
T ss_pred cHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCc---------------c----------
Confidence 445545444443 69999999999998877778888999999996533210000 0
Q ss_pred EEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhC
Q 004824 346 AFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKC 425 (728)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 425 (728)
T Consensus 169 -------------------------------------------------------------------------------- 168 (254)
T cd07490 169 -------------------------------------------------------------------------------- 168 (254)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccch
Q 004824 426 DNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505 (728)
Q Consensus 426 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 505 (728)
..........+.+|... ....||||+|||.+|+++.... ...+.|..++|||||
T Consensus 169 ----------------~~g~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~A 222 (254)
T cd07490 169 ----------------SFGSSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMA 222 (254)
T ss_pred ----------------CCcccccccccCCCCCc-cCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHH
Confidence 00001122223333322 1348999999999999865321 112679999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 506 aP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
||+|||++|||+|++|+|++.+||++|++||+
T Consensus 223 aP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 223 APHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999984
No 23
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=100.00 E-value=4.5e-41 Score=357.33 Aligned_cols=277 Identities=31% Similarity=0.337 Sum_probs=200.1
Q ss_pred CCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCC
Q 004824 101 ASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPR 180 (728)
Q Consensus 101 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~ 180 (728)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.. ...
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~--------------~~~ 51 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD--------------TKD 51 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC--------------CCC
Confidence 58899999999999999999999986421 0000 12334443333221 122
Q ss_pred CCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHHHHHCCCcEEEeccccC
Q 004824 181 DGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQALQDGVDVLSLSLGLS 258 (728)
Q Consensus 181 d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 258 (728)
|..+|||||||||+|+..+..... .+.|+||+|+|+.+|++...+ ....++..+++++.+.+++|||||||..
T Consensus 52 d~~~HGT~vAgiia~~~~~~~~~~-----~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~ 126 (293)
T cd04842 52 DVDGHGTHVAGIIAGKGNDSSSIS-----LYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSP 126 (293)
T ss_pred CCCCCcchhheeeccCCcCCCccc-----ccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCC
Confidence 789999999999999875543211 238999999999999998765 5666788999999999999999999993
Q ss_pred CCCCCChhhHHHHHHHHHH-h-CCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeec
Q 004824 259 LNGIFLEDDAIAVATFAAM-E-KGVLVVASAGNDGPSYW---TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSL 333 (728)
Q Consensus 259 ~~~~~~~~~~~~~~~~~a~-~-~Gi~vV~AAGN~g~~~~---~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~ 333 (728)
... .......++.++. + +|++||+||||++.... ..+...+++|+|||.+.+......
T Consensus 127 --~~~-~~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~-------------- 189 (293)
T cd04842 127 --VNN-GYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE-------------- 189 (293)
T ss_pred --Ccc-ccchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc--------------
Confidence 321 1122233333332 3 89999999999997765 566788999999996543321000
Q ss_pred CCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecc
Q 004824 334 YPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVN 413 (728)
Q Consensus 334 ~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~ 413 (728)
.|.
T Consensus 190 ----------------~~~------------------------------------------------------------- 192 (293)
T cd04842 190 ----------------GGL------------------------------------------------------------- 192 (293)
T ss_pred ----------------ccc-------------------------------------------------------------
Confidence 000
Q ss_pred cHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCccc
Q 004824 414 DGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLY 493 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 493 (728)
........++.||++||...++ +||||+|||.+|+++..... .......
T Consensus 193 -------------------------~~~~~~~~~~~~S~~G~~~~~~--~~pdv~ApG~~i~~~~~~~~----~~~~~~~ 241 (293)
T cd04842 193 -------------------------GQSDNSDTVASFSSRGPTYDGR--IKPDLVAPGTGILSARSGGG----GIGDTSD 241 (293)
T ss_pred -------------------------cccCCCCccccccCcCCCCCCC--cCCCEECCCCCeEeccCCCC----CCCCCCh
Confidence 0012234689999999998866 99999999999999875420 0011123
Q ss_pred CCceeeccccchhHHHHHHHHHHhhhC-----C---CCCHHHHHHHHHhccc
Q 004824 494 SNFNLMSGTSMATPHVAGVAGLLKAAH-----P---DWSPAAIRSALVTTAS 537 (728)
Q Consensus 494 ~~y~~~sGTSmAaP~VAG~aALl~~~~-----p---~lsp~~ik~~L~~TA~ 537 (728)
..|..++|||||||+|||++|||+|++ | .+++.++|++|++||+
T Consensus 242 ~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 242 SAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred hheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 678899999999999999999999985 4 6677899999999985
No 24
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=7.8e-41 Score=355.67 Aligned_cols=265 Identities=30% Similarity=0.375 Sum_probs=184.6
Q ss_pred CCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCC
Q 004824 100 PASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSP 179 (728)
Q Consensus 100 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~ 179 (728)
..+++|+||+|||||+|||++||+|.+.. +..++|.+. ...
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~---------------------------~~~~~~~~~------------~~~ 42 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRD---------------------------ITTKSFVGG------------EDV 42 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCc---------------------------ccCcccCCC------------CCC
Confidence 45789999999999999999999998641 111222211 124
Q ss_pred CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccC
Q 004824 180 RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLS 258 (728)
Q Consensus 180 ~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 258 (728)
.|..+|||||||||+|+..+ +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||..
T Consensus 43 ~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 113 (297)
T cd07480 43 QDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGAD 113 (297)
T ss_pred CCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCC
Confidence 57889999999999998643 1236999999999999997654 6777899999999999999999999983
Q ss_pred CC---------CCCChhhHHHHHHHHH---------------HhCCcEEEEecCCCCCCCCccc-----cCCCceEEecc
Q 004824 259 LN---------GIFLEDDAIAVATFAA---------------MEKGVLVVASAGNDGPSYWTLI-----NGAPWLLTVGA 309 (728)
Q Consensus 259 ~~---------~~~~~~~~~~~~~~~a---------------~~~Gi~vV~AAGN~g~~~~~~~-----~~ap~vitVga 309 (728)
. ........+......+ .++|++||+||||++....... ...+++++|++
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~ 192 (297)
T cd07480 114 -FPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAA 192 (297)
T ss_pred -CcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEE
Confidence 1 0111122222222233 6799999999999986543221 11223333333
Q ss_pred ccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEE
Q 004824 310 GTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAV 389 (728)
Q Consensus 310 st~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i 389 (728)
..
T Consensus 193 V~------------------------------------------------------------------------------ 194 (297)
T cd07480 193 VG------------------------------------------------------------------------------ 194 (297)
T ss_pred EC------------------------------------------------------------------------------
Confidence 11
Q ss_pred EecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEe
Q 004824 390 FISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILA 469 (728)
Q Consensus 390 ~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~A 469 (728)
..+....|+++.+... .||||+|
T Consensus 195 -----------------------------------------------------~~~~~~~~~~~~~~~~----~~~dv~A 217 (297)
T cd07480 195 -----------------------------------------------------ALGRTGNFSAVANFSN----GEVDIAA 217 (297)
T ss_pred -----------------------------------------------------CCCCCCCccccCCCCC----CceEEEe
Confidence 0112223333333221 5789999
Q ss_pred CCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccC
Q 004824 470 PGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDA 549 (728)
Q Consensus 470 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~ 549 (728)
||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.+|+.......... .
T Consensus 218 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~-~---- 279 (297)
T cd07480 218 PGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQ-F---- 279 (297)
T ss_pred CCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCC-C----
Confidence 99999998875 68999999999999999999999999999999888888874433211100 0
Q ss_pred CCCCCCCCCCccCCCccCcc
Q 004824 550 SNNNFPASPLDMGAGHINPN 569 (728)
Q Consensus 550 ~~~~~~~~~~~~G~G~in~~ 569 (728)
.....+.++|+|++++.
T Consensus 280 ---~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 280 ---APGLDLPDRGVGLGLAP 296 (297)
T ss_pred ---CCCCChhhcCCceeecC
Confidence 12235568999999875
No 25
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.5e-41 Score=355.80 Aligned_cols=253 Identities=28% Similarity=0.381 Sum_probs=182.5
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|+++++|+||+||||||||+..|| |.+.++. + ++ .+..+
T Consensus 10 ~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~~---------- 52 (298)
T cd07494 10 ATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAPG---------- 52 (298)
T ss_pred hhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCCC----------
Confidence 4679999999999999999999999998 7643110 0 00 00000
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEec
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLS 254 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~S 254 (728)
......|..|||||||+++ .||||+|+|+.+|+++. ...++++||+||++++++|||||
T Consensus 53 ~~~~~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~S 111 (298)
T cd07494 53 ATDPACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNS 111 (298)
T ss_pred CCCCCCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEee
Confidence 0123567889999999875 59999999999999864 56778999999999999999999
Q ss_pred cccCCCCCC---------ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 255 LGLSLNGIF---------LEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 255 lG~~~~~~~---------~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
||.. ...+ .....+..++..|.++|++||+||||++. .++...|++|+||+++.+.. +
T Consensus 112 lG~~-~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g 178 (298)
T cd07494 112 WGYD-LRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------G 178 (298)
T ss_pred cccC-CCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------C
Confidence 9984 1111 12345777888899999999999999974 46888999999999643321 0
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
..
T Consensus 179 ~~------------------------------------------------------------------------------ 180 (298)
T cd07494 179 AR------------------------------------------------------------------------------ 180 (298)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcE----------------Ee
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDI----------------LA 469 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI----------------~A 469 (728)
......+.|++. ... +..|||+ +|
T Consensus 181 ------------------------------------~~~~~~~~~~s~--~~~--g~~~pd~~~~~g~~~~~~~~~~~~A 220 (298)
T cd07494 181 ------------------------------------RASSYASGFRSK--IYP--GRQVPDVCGLVGMLPHAAYLMLPVP 220 (298)
T ss_pred ------------------------------------cccccccCcccc--cCC--CCccCccccccCcCCcccccccccC
Confidence 000001122221 111 2267776 47
Q ss_pred CCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCC
Q 004824 470 PGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDN 541 (728)
Q Consensus 470 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~ 541 (728)
||..|.++..... ......+.|..++|||||||||||++|||+|++|.|++++||.+|++||+++..
T Consensus 221 PG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 221 PGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC
Confidence 9999876553210 001113679999999999999999999999999999999999999999997743
No 26
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=8.5e-41 Score=345.24 Aligned_cols=240 Identities=31% Similarity=0.408 Sum_probs=189.2
Q ss_pred cEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChh
Q 004824 108 VIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGT 187 (728)
Q Consensus 108 v~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 187 (728)
|+|||||+||+++||+|.+.. +++..+.+... .....|..+|||
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~~-----------~~~~~~~~~HGT 44 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVSN-----------NDPTSDIDGHGT 44 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccCC-----------CCCCCCCCCCHH
Confidence 689999999999999998630 01111111111 013467889999
Q ss_pred hHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCCCCChh
Q 004824 188 HTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLED 266 (728)
Q Consensus 188 hVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~ 266 (728)
||||||+|+..+.. + +.|+||+|+|+.+|++...+ +...++.++|+|+++.+++|||||||.. .......
T Consensus 45 ~vAgiiag~~~~~~---~-----~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~-~~~~~~~ 115 (242)
T cd07498 45 ACAGVAAAVGNNGL---G-----VAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGS-DSTESIS 115 (242)
T ss_pred HHHHHHHhccCCCc---e-----eEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCC-CCCchHH
Confidence 99999999864322 2 38999999999999998764 6788899999999999999999999984 3333456
Q ss_pred hHHHHHHHHHHh-CCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeE
Q 004824 267 DAIAVATFAAME-KGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSL 345 (728)
Q Consensus 267 ~~~~~~~~~a~~-~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~l 345 (728)
..+..++..+.. +|+++|+||||+|......+...+++|+||+.+.
T Consensus 116 ~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~--------------------------------- 162 (242)
T cd07498 116 SAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS--------------------------------- 162 (242)
T ss_pred HHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC---------------------------------
Confidence 677777778888 9999999999999887767788999999998431
Q ss_pred EEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhC
Q 004824 346 AFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKC 425 (728)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 425 (728)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccch
Q 004824 426 DNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505 (728)
Q Consensus 426 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 505 (728)
.+.+++||++||.. |++|||.++.......... .....+.|..++|||||
T Consensus 163 ------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~A 212 (242)
T cd07498 163 ------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFA 212 (242)
T ss_pred ------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHH
Confidence 23568999999865 9999999998875432111 11123678899999999
Q ss_pred hHHHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 506 aP~VAG~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
||+|||++|||+|++|+|++++||++|++|
T Consensus 213 ap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 213 SPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999976
No 27
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.8e-40 Score=346.35 Aligned_cols=249 Identities=31% Similarity=0.429 Sum_probs=190.6
Q ss_pred CCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccc---cccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCC
Q 004824 106 KGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGE---CMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDG 182 (728)
Q Consensus 106 ~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~---~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~ 182 (728)
+||+|||||||||++||+|.++ .|... +..+.+.. .+..+ ... .+++.. .+...+.|.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~-------~~~~~~~~~~~~~~~~---~~~~~-~~~---~~~~~~-----~~~~~~~d~ 62 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDN-------MWVNPGEIPGNGIDDD---GNGYV-DDI---YGWNFV-----NNDNDPMDD 62 (259)
T ss_pred CCCEEEEEeCCCCCCChhhccc-------cccCcccccccCcccC---CCCcc-cCC---Cccccc-----CCCCCCCCC
Confidence 6899999999999999999974 23211 11111100 00000 000 011110 122456788
Q ss_pred CCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCC
Q 004824 183 SGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNG 261 (728)
Q Consensus 183 ~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 261 (728)
.+|||||||||+|+..+... +.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||.. .
T Consensus 63 ~~HGT~va~ii~~~~~~~~~--------~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~--~ 132 (259)
T cd07473 63 NGHGTHVAGIIGAVGNNGIG--------IAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGG--G 132 (259)
T ss_pred CCcHHHHHHHHHCcCCCCCc--------eEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCC--C
Confidence 99999999999998644322 37999999999999998876 7888999999999999999999999993 2
Q ss_pred CCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC---Ccccc--CCCceEEeccccccceeeeEEEcCCCcEEeeeecCCC
Q 004824 262 IFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY---WTLIN--GAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPG 336 (728)
Q Consensus 262 ~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~---~~~~~--~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~ 336 (728)
....+..++.++.++|+++|+||||+|... ..++. ..+++|+||+.+
T Consensus 133 ---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~------------------------- 184 (259)
T cd07473 133 ---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATD------------------------- 184 (259)
T ss_pred ---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecC-------------------------
Confidence 256677778888999999999999998762 23333 357899998843
Q ss_pred CCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHH
Q 004824 337 NSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQ 416 (728)
Q Consensus 337 ~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~ 416 (728)
T Consensus 185 -------------------------------------------------------------------------------- 184 (259)
T cd07473 185 -------------------------------------------------------------------------------- 184 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCc
Q 004824 417 TIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNF 496 (728)
Q Consensus 417 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 496 (728)
..+.++.||++||. +||+.|||.++++.... +.|
T Consensus 185 --------------------------~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~ 218 (259)
T cd07473 185 --------------------------SNDALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGY 218 (259)
T ss_pred --------------------------CCCCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcE
Confidence 12355779999984 57999999999997654 689
Q ss_pred eeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 497 NLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 497 ~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 219 ~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 219 GYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred EEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999984
No 28
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=100.00 E-value=8.3e-40 Score=334.94 Aligned_cols=226 Identities=35% Similarity=0.510 Sum_probs=185.6
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCCh
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHG 186 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 186 (728)
||+|||||+||+++||+|.+. ++..++|.... .....|..+||
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~~----------~~~~~~~~~HG 43 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGDD----------NNDYQDGNGHG 43 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCCC----------CCCCCCCCCCH
Confidence 799999999999999999854 11222222210 02455788999
Q ss_pred hhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCCCCCh
Q 004824 187 THTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLE 265 (728)
Q Consensus 187 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 265 (728)
|||||+|++..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.|++|||||||.. ..
T Consensus 44 T~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~-----~~ 109 (229)
T cd07477 44 THVAGIIAALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGP-----SD 109 (229)
T ss_pred HHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccC-----CC
Confidence 99999999975432 238999999999999998776 6678999999999999999999999983 22
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCCcc--ccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCee
Q 004824 266 DDAIAVATFAAMEKGVLVVASAGNDGPSYWTL--INGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQV 343 (728)
Q Consensus 266 ~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~--~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~ 343 (728)
...+..++..+.++|+++|+||||++...... +...+++|+||+.+.
T Consensus 110 ~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~------------------------------- 158 (229)
T cd07477 110 SPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS------------------------------- 158 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC-------------------------------
Confidence 34556667788899999999999999876654 778899999998432
Q ss_pred eEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHH
Q 004824 344 SLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIK 423 (728)
Q Consensus 344 ~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 423 (728)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeecccc
Q 004824 424 KCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTS 503 (728)
Q Consensus 424 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTS 503 (728)
.+.++.||++|+.. |++|||.+|+++++. +.|..++|||
T Consensus 159 --------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS 197 (229)
T cd07477 159 --------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTS 197 (229)
T ss_pred --------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHH
Confidence 12457899999754 999999999998875 5789999999
Q ss_pred chhHHHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 504 MATPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 504 mAaP~VAG~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
||||+|||++|||+|++|.+++.+||++|++|
T Consensus 198 ~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 198 MATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999999999999986
No 29
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=4.7e-40 Score=344.14 Aligned_cols=246 Identities=25% Similarity=0.274 Sum_probs=177.7
Q ss_pred CCCCCCC-CCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 96 SGAWPAS-NYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 96 ~~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
..+|+.. ..|+||+|+|||+|||.+||+|.++... . ...
T Consensus 5 ~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~---------------------------~---~~~---------- 44 (277)
T cd04843 5 RYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT---------------------------L---ISG---------- 44 (277)
T ss_pred HHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc---------------------------c---cCC----------
Confidence 5678774 4589999999999999999999864110 0 000
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH----CCCcE
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ----DGVDV 250 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~----~g~dV 250 (728)
..+.|..+|||||||||+|.. +.+|. .||||+|+|+.+|++. .++++++|++|++ .++.+
T Consensus 45 --~~~~d~~gHGT~VAGiIaa~~----n~~G~-----~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~ 108 (277)
T cd04843 45 --LTDQADSDHGTAVLGIIVAKD----NGIGV-----TGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVIL 108 (277)
T ss_pred --CCCCCCCCCcchhheeeeeec----CCCce-----eeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEE
Confidence 014577899999999999963 22233 7999999999999975 3456777777777 34678
Q ss_pred EEeccccCCCCC----CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCccc-------------cCCCceEEecccccc
Q 004824 251 LSLSLGLSLNGI----FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLI-------------NGAPWLLTVGAGTID 313 (728)
Q Consensus 251 IN~SlG~~~~~~----~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~-------------~~ap~vitVgast~~ 313 (728)
||||||...... ......+..++..+.++|++||+||||++....... ...|++|+|||++.+
T Consensus 109 in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~ 188 (277)
T cd04843 109 LEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST 188 (277)
T ss_pred EEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC
Confidence 999999841111 123445566777888999999999999987532111 123578888874311
Q ss_pred ceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecC
Q 004824 314 REFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISN 393 (728)
Q Consensus 314 ~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~ 393 (728)
.
T Consensus 189 ~------------------------------------------------------------------------------- 189 (277)
T cd04843 189 T------------------------------------------------------------------------------- 189 (277)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred CCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCc
Q 004824 394 SALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSL 473 (728)
Q Consensus 394 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~ 473 (728)
...++.||++||.. ||.|||++
T Consensus 190 --------------------------------------------------~~~~~~fSn~G~~v--------di~APG~~ 211 (277)
T cd04843 190 --------------------------------------------------GHTRLAFSNYGSRV--------DVYGWGEN 211 (277)
T ss_pred --------------------------------------------------CCccccccCCCCcc--------ceEcCCCC
Confidence 11378999999865 99999999
Q ss_pred eeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhh----h-CCCCCHHHHHHHHHhccc
Q 004824 474 VLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKA----A-HPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 474 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~lsp~~ik~~L~~TA~ 537 (728)
|+++....... ........|..++|||||||||||++|||++ + +|+|+|+|||++|+.|++
T Consensus 212 i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 212 VTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred eEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 99998753211 0011113457899999999999999999975 3 499999999999999974
No 30
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=100.00 E-value=2.1e-40 Score=350.05 Aligned_cols=275 Identities=36% Similarity=0.463 Sum_probs=207.7
Q ss_pred EEEEEccCCCCCCCCCC-CCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChh
Q 004824 109 IIGLVDTGIWPESQSFS-DEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGT 187 (728)
Q Consensus 109 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT 187 (728)
+|||||||||++||+|. +. + ...++.+.+.|.++. .......|..+|||
T Consensus 1 ~V~viDtGid~~h~~~~~~~-~---------------------~~~~~~~~~~~~~~~--------~~~~~~~~~~~HGT 50 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN-F---------------------IWSKVPGGYNFVDGN--------PNPSPSDDDNGHGT 50 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT-E---------------------EEEEEEEEEETTTTB--------STTTSSSTSSSHHH
T ss_pred CEEEEcCCcCCCChhHccCC-c---------------------ccccccceeeccCCC--------CCcCccccCCCccc
Confidence 69999999999999998 43 0 112233444454432 11234567889999
Q ss_pred hHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHH-HCCCcEEEeccccCC-CCCCCh
Q 004824 188 HTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQAL-QDGVDVLSLSLGLSL-NGIFLE 265 (728)
Q Consensus 188 hVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~-~~g~dVIN~SlG~~~-~~~~~~ 265 (728)
||||+|+|.. . .+..+ ..|+||+|+|+.+|++...+....+++++|++++ +.+++|||||||... ......
T Consensus 51 ~va~ii~~~~-~-~~~~~-----~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~ 123 (282)
T PF00082_consen 51 HVAGIIAGNG-G-NNGPG-----INGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSY 123 (282)
T ss_dssp HHHHHHHHTT-S-SSSSS-----ETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHH
T ss_pred hhhhhccccc-c-ccccc-----cccccccccccccccccccccccccccchhhhhhhccCCcccccccccccccccccc
Confidence 9999999996 3 22222 2899999999999998877777888999999999 899999999998820 112223
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCe
Q 004824 266 DDAIAVATFAAMEKGVLVVASAGNDGPSYW---TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQ 342 (728)
Q Consensus 266 ~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~---~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~ 342 (728)
.+.+..++..+.++|+++|+||||++.... ..+...+++|+||+.+
T Consensus 124 ~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~------------------------------- 172 (282)
T PF00082_consen 124 SDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVD------------------------------- 172 (282)
T ss_dssp HHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEE-------------------------------
T ss_pred ccccccccccccccCcceeeccccccccccccccccccccccccccccc-------------------------------
Confidence 445566667888999999999999987664 3555668899998842
Q ss_pred eeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHH
Q 004824 343 VSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYI 422 (728)
Q Consensus 343 ~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~ 422 (728)
T Consensus 173 -------------------------------------------------------------------------------- 172 (282)
T PF00082_consen 173 -------------------------------------------------------------------------------- 172 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhCCCCeEEEEeeeeEecccCCCccccccCCCCCC-CCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeecc
Q 004824 423 KKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFL-SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSG 501 (728)
Q Consensus 423 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~-~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 501 (728)
....++.||++|+.. ..+ +||||+|||.+|++.++... ...|..++|
T Consensus 173 --------------------~~~~~~~~s~~g~~~~~~~--~~~di~a~G~~i~~~~~~~~----------~~~~~~~~G 220 (282)
T PF00082_consen 173 --------------------NNGQPASYSNYGGPSDDGR--IKPDIAAPGGNILSAVPGSD----------RGSYTSFSG 220 (282)
T ss_dssp --------------------TTSSBSTTSSBSTTETTCT--TCEEEEEECSSEEEEETTTE----------SEEEEEEES
T ss_pred --------------------ccccccccccccccccccc--cccccccccccccccccccc----------cccccccCc
Confidence 112568999997554 444 99999999999988887531 035788999
Q ss_pred ccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 502 TSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 502 TSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
||||||+|||++|||+|++|+|++.+||.+|++||.+..... .......||||+||+.+|++
T Consensus 221 TS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~----------~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 221 TSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN----------GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT----------SSSSHHHHTTSBE-HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC----------CCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999999999999999999987211 11244578999999999874
No 31
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=344.89 Aligned_cols=283 Identities=28% Similarity=0.427 Sum_probs=227.3
Q ss_pred ceeeEEEEEeCHHHHHHHhcCCCeEEEecCCcccccC-----CCCccccCCCCCCC-------CC----CCCCCCCCcEE
Q 004824 47 NSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVHT-----THTSEFLGLSSLSG-------AW----PASNYGKGVII 110 (728)
Q Consensus 47 ~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~~~-------~~----~~~~~G~Gv~V 110 (728)
.+|+|..-.++.+-+..++..|-++.++++...+... .+...-|||.++.. .| .+-..|+||..
T Consensus 144 ~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvta 223 (501)
T KOG1153|consen 144 RVFRGYTGYFTGESVCSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTA 223 (501)
T ss_pred chhhccccccccceeeeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEE
Confidence 3889999999999999999999999999987665432 11222234432111 11 12336999999
Q ss_pred EEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChhhHH
Q 004824 111 GLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTS 190 (728)
Q Consensus 111 gVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVA 190 (728)
.|+||||+.+||+|.++ +.| |.|.. +-....|++|||||||
T Consensus 224 Yv~DTGVni~H~dFegR------a~w-Ga~i~--------------------------------~~~~~~D~nGHGTH~A 264 (501)
T KOG1153|consen 224 YVLDTGVNIEHPDFEGR------AIW-GATIP--------------------------------PKDGDEDCNGHGTHVA 264 (501)
T ss_pred EEecccccccccccccc------eec-ccccC--------------------------------CCCcccccCCCcceee
Confidence 99999999999999986 334 11100 0124568999999999
Q ss_pred HHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHC---------CCcEEEeccccCCC
Q 004824 191 SIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQD---------GVDVLSLSLGLSLN 260 (728)
Q Consensus 191 giiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~---------g~dVIN~SlG~~~~ 260 (728)
|+|+++. .|+|.+++|+++||++++| +..+++++++|++++. +..|.|||+|+ .
T Consensus 265 G~I~sKt--------------~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg--~ 328 (501)
T KOG1153|consen 265 GLIGSKT--------------FGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGG--F 328 (501)
T ss_pred eeeeccc--------------cccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCC--c
Confidence 9999985 7999999999999999988 8999999999999986 47899999999 2
Q ss_pred CCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCC-CccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCC
Q 004824 261 GIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSY-WTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSS 339 (728)
Q Consensus 261 ~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~-~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~ 339 (728)
..-.+..|++.|.+.||++++||||+..+. .+.|..+..+|||||+|.
T Consensus 329 ----~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------- 377 (501)
T KOG1153|consen 329 ----RSAALNMAVNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------------------- 377 (501)
T ss_pred ----ccHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------------------
Confidence 445667788899999999999999998765 456678899999999642
Q ss_pred CCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHH
Q 004824 340 PSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTII 419 (728)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~ 419 (728)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceee
Q 004824 420 DYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLM 499 (728)
Q Consensus 420 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 499 (728)
.+.+|.||+||++. ||.|||++|+|+|.+. ++.-..+
T Consensus 378 ------------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs-----------~~at~il 414 (501)
T KOG1153|consen 378 ------------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGS-----------NNATAIL 414 (501)
T ss_pred ------------------------ccchhhhcCcccee--------eeecCchhhhhhhhcC-----------ccchhee
Confidence 23789999999998 9999999999999974 2567799
Q ss_pred ccccchhHHHHHHHHHHhhhCC---------CCCHHHHHHHHHhcccc
Q 004824 500 SGTSMATPHVAGVAGLLKAAHP---------DWSPAAIRSALVTTASP 538 (728)
Q Consensus 500 sGTSmAaP~VAG~aALl~~~~p---------~lsp~~ik~~L~~TA~~ 538 (728)
||||||+|||||++|.+++.+| ..||.++|..++.-..+
T Consensus 415 SGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 415 SGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred ecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhccccc
Confidence 9999999999999999999988 23788888888766553
No 32
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=1.5e-39 Score=334.98 Aligned_cols=215 Identities=23% Similarity=0.262 Sum_probs=166.2
Q ss_pred CCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCC
Q 004824 105 GKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 105 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~g 184 (728)
+++|+|||||||||++||+|.++ ++..++|...... .........|..|
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~----~~~~~~~~~d~~g 50 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD----GNKVSPYYVSADG 50 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC----cccCCCCCCCCCC
Confidence 78999999999999999999864 1112222211000 0000112346889
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-------CChHHHHHHHHHHHHCCCcEEEecccc
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-------VYSSDVVAAIDQALQDGVDVLSLSLGL 257 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-------~~~~~i~~ai~~a~~~g~dVIN~SlG~ 257 (728)
|||||||||+ |+||+|+|+.+|+++..+ ++...+++||+||+++|+||||||||.
T Consensus 51 HGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~ 112 (247)
T cd07491 51 HGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTI 112 (247)
T ss_pred cHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeec
Confidence 9999999994 789999999999998643 456789999999999999999999998
Q ss_pred CCCCCC---ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC-c--cccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 258 SLNGIF---LEDDAIAVATFAAMEKGVLVVASAGNDGPSYW-T--LINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 258 ~~~~~~---~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~-~--~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
. ... .....+..++.+|.++|++||+||||+|.... . .+...|++|+|||.+.
T Consensus 113 ~--~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~------------------- 171 (247)
T cd07491 113 K--KPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE------------------- 171 (247)
T ss_pred c--cccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-------------------
Confidence 3 321 13567788888999999999999999997754 3 3456789999998532
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCc
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGL 491 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 491 (728)
.+.++.||++|+.. |++|||++|+++.+..
T Consensus 172 --------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~---------- 201 (247)
T cd07491 172 --------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPP---------- 201 (247)
T ss_pred --------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCC----------
Confidence 22567899999765 9999999999987521
Q ss_pred ccCCceeeccccchhHHHHHHHHHHhhh
Q 004824 492 LYSNFNLMSGTSMATPHVAGVAGLLKAA 519 (728)
Q Consensus 492 ~~~~y~~~sGTSmAaP~VAG~aALl~~~ 519 (728)
..+.|..++|||||||||||++|||++.
T Consensus 202 ~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 202 LSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 1268999999999999999999999974
No 33
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=100.00 E-value=3.7e-39 Score=342.83 Aligned_cols=252 Identities=29% Similarity=0.321 Sum_probs=177.6
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccc--cccccCCCCccCCCCCCCCCC
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNK--GLIANNPKLKVRMNSPRDGSG 184 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~--~~~~~~~~~~~~~~~~~d~~g 184 (728)
.|+|||||||||++||+|.+.-.. ..+.+.. .++......+.+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 389999999999999999863100 0000000 000000011111234567889
Q ss_pred ChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCC-ChHHHHHHHHHHHHCCCcEEEeccccCCCCC-
Q 004824 185 HGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGV-YSSDVVAAIDQALQDGVDVLSLSLGLSLNGI- 262 (728)
Q Consensus 185 HGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~-~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~- 262 (728)
|||||||+|+|+.. ..||||+|+|+.+|+++..+. ...+++++|++|++++++|||||||.. ...
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~-~~~~ 121 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGY-LIIG 121 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccC-CCCC
Confidence 99999999998642 159999999999999987764 888999999999999999999999984 111
Q ss_pred ------CChhhHHHHHHHHHHhCCcEEEEecCCCCCCCC----------------------ccccCCCceEEeccccccc
Q 004824 263 ------FLEDDAIAVATFAAMEKGVLVVASAGNDGPSYW----------------------TLINGAPWLLTVGAGTIDR 314 (728)
Q Consensus 263 ------~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~----------------------~~~~~ap~vitVgast~~~ 314 (728)
......+..++..+.++|++||+||||+|.... ..+...+++|+|||++
T Consensus 122 ~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~vi~Vga~~--- 198 (294)
T cd07482 122 GEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDGLDVSNKQELLDFLSSGDDFSVNGEVYDVPASLPNVITVSATD--- 198 (294)
T ss_pred cccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCCcccccccccccccccccccccCCcceecccccCceEEEEeeC---
Confidence 112245666777788999999999999996541 1223345556665532
Q ss_pred eeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCC
Q 004824 315 EFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 315 ~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
T Consensus 199 -------------------------------------------------------------------------------- 198 (294)
T cd07482 199 -------------------------------------------------------------------------------- 198 (294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCce
Q 004824 395 ALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLV 474 (728)
Q Consensus 395 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I 474 (728)
..+.++.||++|+. ++|++|||.++
T Consensus 199 ------------------------------------------------~~~~~~~~S~~g~~-------~~~~~apG~~~ 223 (294)
T cd07482 199 ------------------------------------------------NNGNLSSFSNYGNS-------RIDLAAPGGDF 223 (294)
T ss_pred ------------------------------------------------CCCCcCccccCCCC-------cceEECCCCCc
Confidence 23466789999874 45999999988
Q ss_pred eeccCCCCC---ccc------cccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCH-HHHHHHHHhc
Q 004824 475 LASWSPISS---VAE------VQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSP-AAIRSALVTT 535 (728)
Q Consensus 475 ~sa~~~~~~---~~~------~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp-~~ik~~L~~T 535 (728)
......... ... .......+.|..++|||||||+|||++|||+|++|.|++ .|||++|++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 224 LLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred ccccccCccccccccccccceeeecccCCceEeecchhhhhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 532211100 000 011123468899999999999999999999999999999 9999999986
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=100.00 E-value=2.3e-38 Score=322.75 Aligned_cols=221 Identities=23% Similarity=0.266 Sum_probs=173.1
Q ss_pred CcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCCh
Q 004824 107 GVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHG 186 (728)
Q Consensus 107 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 186 (728)
||+|||||||||++||+|.+.-. ..+.+..+ ..........|..|||
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~---------------------------~~~~~~~~------~~~~~~~~~~d~~gHG 47 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLAL---------------------------DGEVTIDL------EIIVVSAEGGDKDGHG 47 (222)
T ss_pred CCEEEEEeCCCCCCChhhhcccc---------------------------cccccccc------ccccCCCCCCCCCCcH
Confidence 79999999999999999986411 00111000 0001113456788999
Q ss_pred hhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCCCCCh
Q 004824 187 THTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLE 265 (728)
Q Consensus 187 ThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~ 265 (728)
|||||||++ .+|+++|+.+|+++..+ +...++++||+|++++|++|||||||.. ... .
T Consensus 48 T~vAgiia~------------------~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~--~~~-~ 106 (222)
T cd07492 48 TACAGIIKK------------------YAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGP--GDR-D 106 (222)
T ss_pred HHHHHHHHc------------------cCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC--CCC-c
Confidence 999999964 46999999999998776 7888999999999999999999999983 322 2
Q ss_pred hhHHHHHHHHHHhCCcEEEEecCCCCCCCCccccCCCceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeE
Q 004824 266 DDAIAVATFAAMEKGVLVVASAGNDGPSYWTLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSL 345 (728)
Q Consensus 266 ~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~l 345 (728)
...+..++.++.++|+++|+||||++.... .+...+.+|+|++...+.
T Consensus 107 ~~~~~~~~~~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~------------------------------- 154 (222)
T cd07492 107 FPLLKELLEYAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD------------------------------- 154 (222)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC-------------------------------
Confidence 345667777888899999999999987544 366778999998743111
Q ss_pred EEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhC
Q 004824 346 AFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKC 425 (728)
Q Consensus 346 v~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 425 (728)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccch
Q 004824 426 DNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMA 505 (728)
Q Consensus 426 ~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 505 (728)
..+. ++ .++|++|||.+|+++.+. +.|..++|||||
T Consensus 155 --------------------~~~~---~~--------~~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~A 190 (222)
T cd07492 155 --------------------PKSF---WY--------IYVEFSADGVDIIAPAPH-------------GRYLTVSGNSFA 190 (222)
T ss_pred --------------------Cccc---cc--------CCceEEeCCCCeEeecCC-------------CCEEEeccHHHH
Confidence 1111 12 456999999999998875 578999999999
Q ss_pred hHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 506 TPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 506 aP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 191 ap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 191 APHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999999999999985
No 35
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=100.00 E-value=4e-39 Score=343.03 Aligned_cols=249 Identities=24% Similarity=0.215 Sum_probs=179.6
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
...+|..+++|+||+|+|||||||++||+|.++... ...++|.....
T Consensus 28 ~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~-------- 74 (297)
T cd04059 28 VTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP-------- 74 (297)
T ss_pred cHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC--------
Confidence 466999999999999999999999999999864110 01112221110
Q ss_pred CCCCC--CCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEE
Q 004824 175 RMNSP--RDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLS 252 (728)
Q Consensus 175 ~~~~~--~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN 252 (728)
...+ .|..+|||||||||+|+..+.. | ..||||+|+|+.+|++... .....+..++.++.+ .++|||
T Consensus 75 -~~~~~~~~~~gHGT~vAgiiag~~~~~~---~-----~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin 143 (297)
T cd04059 75 -DPTPRYDDDNSHGTRCAGEIAAVGNNGI---C-----GVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYS 143 (297)
T ss_pred -CCCCccccccccCcceeeEEEeecCCCc---c-----cccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEE
Confidence 0112 2788999999999999854321 2 2799999999999998764 334455566665554 469999
Q ss_pred eccccCCCCC---CChhhHHHHHHHHHHh-----CCcEEEEecCCCCCCCCc----cccCCCceEEeccccccceeeeEE
Q 004824 253 LSLGLSLNGI---FLEDDAIAVATFAAME-----KGVLVVASAGNDGPSYWT----LINGAPWLLTVGAGTIDREFEGSL 320 (728)
Q Consensus 253 ~SlG~~~~~~---~~~~~~~~~~~~~a~~-----~Gi~vV~AAGN~g~~~~~----~~~~ap~vitVgast~~~~~~~~~ 320 (728)
||||.. ... .........++.++.. +|++||+||||+|..... .....|++|+|||.+.
T Consensus 144 ~S~g~~-~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~-------- 214 (297)
T cd04059 144 NSWGPD-DDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA-------- 214 (297)
T ss_pred CCCCCC-CCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC--------
Confidence 999984 111 1122233334444443 699999999999973321 2235688999998431
Q ss_pred EcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccc
Q 004824 321 TLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVY 400 (728)
Q Consensus 321 ~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 400 (728)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCc-------
Q 004824 401 IRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSL------- 473 (728)
Q Consensus 401 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~------- 473 (728)
.+.++.||++|+.. ++.|||..
T Consensus 215 -------------------------------------------~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~ 243 (297)
T cd04059 215 -------------------------------------------NGVRASYSEVGSSV--------LASAPSGGSGNPEAS 243 (297)
T ss_pred -------------------------------------------CCCCcCCCCCCCcE--------EEEecCCCCCCCCCc
Confidence 23568899999876 89999987
Q ss_pred eeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 474 VLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 474 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 244 i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 244 IVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred eEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66555431 0156788999999999999999999999999999999999999985
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=100.00 E-value=7.8e-38 Score=327.44 Aligned_cols=243 Identities=29% Similarity=0.347 Sum_probs=186.5
Q ss_pred CCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCC
Q 004824 104 YGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGS 183 (728)
Q Consensus 104 ~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~ 183 (728)
+|+||+|+|||+||+++||+|.+...... .+..... .......|..
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~~-------~~~~~~~~~~ 46 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVND-------AGYASNGDGD 46 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------ccccccc-------ccCCCCCCCC
Confidence 59999999999999999999986521100 0000000 0012345678
Q ss_pred CChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC--CChHHHHHHHHHHHHCCCcEEEeccccCCCC
Q 004824 184 GHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG--VYSSDVVAAIDQALQDGVDVLSLSLGLSLNG 261 (728)
Q Consensus 184 gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~ 261 (728)
+|||||||+|+|+..+ ....|+||+|+|+.+|+++..+ +....+.++++++++.+++|||||||.. ..
T Consensus 47 ~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~-~~ 116 (267)
T cd04848 47 SHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGN-PA 116 (267)
T ss_pred ChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCC-Cc
Confidence 9999999999998643 2238999999999999998764 5667788999999999999999999994 21
Q ss_pred CC-----------ChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCcc---------ccCCCceEEeccccccceeeeEEE
Q 004824 262 IF-----------LEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTL---------INGAPWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 262 ~~-----------~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~---------~~~ap~vitVgast~~~~~~~~~~ 321 (728)
.. .....+...+..+.++|+++|+||||++...... +...+++|+||+.+.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~~------- 189 (267)
T cd04848 117 IDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPNG------- 189 (267)
T ss_pred ccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCCC-------
Confidence 11 2455666677788999999999999998754333 23457889998854221
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
T Consensus 190 -------------------------------------------------------------------------------- 189 (267)
T cd04848 190 -------------------------------------------------------------------------------- 189 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCcccc--ccCCCCCCCCCCCCCCcEEeCCCceeeccC
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDS--YSSRGPFLSCPNIPKPDILAPGSLVLASWS 479 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSS~GP~~~~~~~lKPDI~APG~~I~sa~~ 479 (728)
.... ||++|+... .++++|||.+|+++.+
T Consensus 190 --------------------------------------------~~~~~~~s~~~~~~~-----~~~~~apG~~i~~~~~ 220 (267)
T cd04848 190 --------------------------------------------TIASYSYSNRCGVAA-----NWCLAAPGENIYSTDP 220 (267)
T ss_pred --------------------------------------------Ccccccccccchhhh-----hheeecCcCceeeccc
Confidence 2233 488887653 3489999999999877
Q ss_pred CCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccc
Q 004824 480 PISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTAS 537 (728)
Q Consensus 480 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~ 537 (728)
.. ...|..++|||||||+|||++|||+|++|+|++++||++|++||+
T Consensus 221 ~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 221 DG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred CC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 31 157889999999999999999999999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-36 Score=322.79 Aligned_cols=344 Identities=24% Similarity=0.325 Sum_probs=252.8
Q ss_pred ccHHHHHHHHhccccccc-cccccccCCcccEEEEecceeeEEEEEeC-----HHHHHHHhcCCCeEEEecCCcccccCC
Q 004824 11 SSLYTWYLFMLCSVSESS-KATATSSTISSKLVYTYANSIHGFSATLT-----VSELETLKKLPGYISSTPDRPLAVHTT 84 (728)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~y~~~~ngfs~~l~-----~~~~~~L~~~p~V~~V~~~~~~~~~~~ 84 (728)
..|+.+++|.|++....- +- -.....-..|-.-|.-+-++-. .-+|+.|..+|+|+.|.|.+....-..
T Consensus 63 k~r~syi~skl~gS~VtnWri-----ipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~ 137 (1033)
T KOG4266|consen 63 KDRRSYIESKLRGSGVTNWRI-----IPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLS 137 (1033)
T ss_pred hHHHHHHHHHhhcCCCCceeE-----eeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhccc
Confidence 357778888777433110 00 0012222344444544444332 234789999999999999876543100
Q ss_pred -----------------------------------CCccccCCC-------CCCCCCCCCCCCCCcEEEEEccCCCCCCC
Q 004824 85 -----------------------------------HTSEFLGLS-------SLSGAWPASNYGKGVIIGLVDTGIWPESQ 122 (728)
Q Consensus 85 -----------------------------------~s~~~~g~~-------~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp 122 (728)
+++..+... .++-+|.+|++|++|+|||+|||+.-+||
T Consensus 138 y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HP 217 (1033)
T KOG4266|consen 138 YPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHP 217 (1033)
T ss_pred ccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCc
Confidence 000000000 13459999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccCCCCCCCCCCChhhHHHHhccCCcCCCC
Q 004824 123 SFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVRMNSPRDGSGHGTHTSSIAAGNYVKGSS 202 (728)
Q Consensus 123 ~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAgiiaG~~~~~~~ 202 (728)
.|+.-. ...++.+ .+.-.|..||||.|||+|||..
T Consensus 218 HFrnvK----------------------------ERTNWTN------------E~tLdD~lgHGTFVAGvia~~~----- 252 (1033)
T KOG4266|consen 218 HFRNVK----------------------------ERTNWTN------------EDTLDDNLGHGTFVAGVIAGRN----- 252 (1033)
T ss_pred cccchh----------------------------hhcCCcC------------ccccccCcccceeEeeeeccch-----
Confidence 998520 0001111 1245578899999999999974
Q ss_pred cccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHHHCCCcEEEeccccCCCCCCChhhHHHHHHHHHHhCCc
Q 004824 203 YFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQALQDGVDVLSLSLGLSLNGIFLEDDAIAVATFAAMEKGV 281 (728)
Q Consensus 203 ~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~Gi 281 (728)
...|.||+++|+++|||.+.- .+++++++|+.||+....||+|+|+|++ .+.+.++-.-+.+...++|
T Consensus 253 -------ec~gfa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP----DfmD~PFVeKVwEltAnNv 321 (1033)
T KOG4266|consen 253 -------ECLGFASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP----DFMDLPFVEKVWELTANNV 321 (1033)
T ss_pred -------hhcccCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc----ccccchHHHHHHhhccCcE
Confidence 137999999999999998765 8899999999999999999999999995 4555667666778889999
Q ss_pred EEEEecCCCCCCCCccccCCC--ceEEeccccccceeeeEEEcCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCcc
Q 004824 282 LVVASAGNDGPSYWTLINGAP--WLLTVGAGTIDREFEGSLTLGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKK 359 (728)
Q Consensus 282 ~vV~AAGN~g~~~~~~~~~ap--~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~ 359 (728)
++|.|+||+|+-.++..+++. .||.||.
T Consensus 322 IMvSAiGNDGPLYGTLNNPaDQsDViGVGG-------------------------------------------------- 351 (1033)
T KOG4266|consen 322 IMVSAIGNDGPLYGTLNNPADQSDVIGVGG-------------------------------------------------- 351 (1033)
T ss_pred EEEEecCCCCcceeecCCcccccceeeecc--------------------------------------------------
Confidence 999999999999998887664 4555543
Q ss_pred CcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEe
Q 004824 360 VINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVI 439 (728)
Q Consensus 360 ~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~ 439 (728)
T Consensus 352 -------------------------------------------------------------------------------- 351 (1033)
T KOG4266|consen 352 -------------------------------------------------------------------------------- 351 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCccccccCCCCCC----CCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCCceeeccccchhHHHHHHHHH
Q 004824 440 GTKPAPMVDSYSSRGPFL----SCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGL 515 (728)
Q Consensus 440 ~~~~~~~~a~fSS~GP~~----~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 515 (728)
....+.+|.|||||-+. .+.+.+||||++.|.+|...... .+...+||||.|+|.|||+++|
T Consensus 352 -IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~L 417 (1033)
T KOG4266|consen 352 -IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCL 417 (1033)
T ss_pred -ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeee
Confidence 22345889999999642 24466999999999999876654 5778899999999999999999
Q ss_pred Hhh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCccccCC
Q 004824 516 LKA----AHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKALD 573 (728)
Q Consensus 516 l~~----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~Al~ 573 (728)
|.+ +.--+.|+-+|++|+..|.++... +-|+||+|++|+.++.+
T Consensus 418 LvS~~~qk~dl~NPASmKQaLiegA~kLpg~--------------NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 418 LVSVEAQKKDLLNPASMKQALIEGAAKLPGP--------------NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred EeeeheehhhccCHHHHHHHHHhHHhhCCCC--------------chhhccCcchhHHHHHH
Confidence 976 233468999999999999998642 45699999999988866
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.98 E-value=3.5e-32 Score=279.36 Aligned_cols=194 Identities=20% Similarity=0.113 Sum_probs=140.9
Q ss_pred CCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHH--HHCCCcEEEeccc
Q 004824 179 PRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQA--LQDGVDVLSLSLG 256 (728)
Q Consensus 179 ~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a--~~~g~dVIN~SlG 256 (728)
..|..+|||||||||||. .|++|+|+|+..++.. .....+..+++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999997 4678999998755521 2334466778888 5678999999999
Q ss_pred cCCCCCC-----ChhhHHHHHHHHHHhC-CcEEEEecCCCCCCC-----CccccCCCceEEeccccccceeeeEEEcCCC
Q 004824 257 LSLNGIF-----LEDDAIAVATFAAMEK-GVLVVASAGNDGPSY-----WTLINGAPWLLTVGAGTIDREFEGSLTLGNG 325 (728)
Q Consensus 257 ~~~~~~~-----~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~-----~~~~~~ap~vitVgast~~~~~~~~~~~~~g 325 (728)
.. .... ...+.+..++..+.++ |+++|+||||+|... ...+..++++|+|||.+....
T Consensus 95 ~~-~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~---------- 163 (247)
T cd07488 95 EG-LKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD---------- 163 (247)
T ss_pred cC-CCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC----------
Confidence 84 2221 1233456666666655 999999999999753 233456788999998532211
Q ss_pred cEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCc
Q 004824 326 VQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSF 405 (728)
Q Consensus 326 ~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~ 405 (728)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCC--CCCCCCCCCCCCcEEeCCCceeeccCCCCC
Q 004824 406 PAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSR--GPFLSCPNIPKPDILAPGSLVLASWSPISS 483 (728)
Q Consensus 406 p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~--GP~~~~~~~lKPDI~APG~~I~sa~~~~~~ 483 (728)
....+.||++ +|..+.+ .||||+|||++|++ +.
T Consensus 164 --------------------------------------~~~~s~~sn~~~~~~~~~~--~~~di~APG~~i~s--~~--- 198 (247)
T cd07488 164 --------------------------------------RFFASDVSNAGSEINSYGR--RKVLIVAPGSNYNL--PD--- 198 (247)
T ss_pred --------------------------------------cceecccccccCCCCCCCC--ceeEEEEeeeeEEC--CC---
Confidence 0023455654 4544444 89999999999998 22
Q ss_pred ccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCC------HHHHHHHHHhcc
Q 004824 484 VAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWS------PAAIRSALVTTA 536 (728)
Q Consensus 484 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ls------p~~ik~~L~~TA 536 (728)
+.|..++|||||||||||++|||++++|.+. --++|.+|+.|+
T Consensus 199 ----------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 199 ----------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred ----------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 5688999999999999999999999987665 456777777653
No 39
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6.9e-32 Score=298.92 Aligned_cols=239 Identities=28% Similarity=0.390 Sum_probs=178.3
Q ss_pred CCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCC-C--CChHHHHHHHHHHHHCCCcEEEeccccC
Q 004824 182 GSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRH-G--VYSSDVVAAIDQALQDGVDVLSLSLGLS 258 (728)
Q Consensus 182 ~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~-g--~~~~~i~~ai~~a~~~g~dVIN~SlG~~ 258 (728)
...|||||||||+|+..+... ..|+||+|+|+.+++.+.. | -+...+.+|+..++++.+||||||+|-.
T Consensus 309 Sg~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~ 380 (1304)
T KOG1114|consen 309 SGPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGED 380 (1304)
T ss_pred CCCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCcc
Confidence 346999999999999865433 3799999999999997643 2 4556788999999999999999999985
Q ss_pred CCCCCChhhHHHHHHHHHHhCCcEEEEecCCCCCCCCcccc---CCCceEEeccccccceeeeEEEcCCCcEEeeeecCC
Q 004824 259 LNGIFLEDDAIAVATFAAMEKGVLVVASAGNDGPSYWTLIN---GAPWLLTVGAGTIDREFEGSLTLGNGVQINFKSLYP 335 (728)
Q Consensus 259 ~~~~~~~~~~~~~~~~~a~~~Gi~vV~AAGN~g~~~~~~~~---~ap~vitVgast~~~~~~~~~~~~~g~~~~g~s~~~ 335 (728)
...+.....+...-..+.++|+++|.||||.||...+++. ..-.+|.|||.-...-.
T Consensus 381 -a~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm------------------- 440 (1304)
T KOG1114|consen 381 -AHLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM------------------- 440 (1304)
T ss_pred -CCCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH-------------------
Confidence 3333334444444344558999999999999998876654 34478888882110000
Q ss_pred CCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEeecccH
Q 004824 336 GNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFINVNDG 415 (728)
Q Consensus 336 ~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~~~~g 415 (728)
...|.+.
T Consensus 441 ----~a~y~~~--------------------------------------------------------------------- 447 (1304)
T KOG1114|consen 441 ----QAEYSVR--------------------------------------------------------------------- 447 (1304)
T ss_pred ----Hhhhhhh---------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccCcccCC
Q 004824 416 QTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSGLLYSN 495 (728)
Q Consensus 416 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 495 (728)
.........+|||||+.|+. +--.|+|||+-|.+- |... ...
T Consensus 448 -------------------------e~vp~~~YtWsSRgP~~DG~--lGVsi~APggAiAsV-P~~t----------lq~ 489 (1304)
T KOG1114|consen 448 -------------------------EPVPSNPYTWSSRGPCLDGD--LGVSISAPGGAIASV-PQYT----------LQN 489 (1304)
T ss_pred -------------------------ccCCCCccccccCCCCcCCC--cceEEecCCccccCC-chhh----------hhh
Confidence 01123467899999999977 888999999988552 3211 145
Q ss_pred ceeeccccchhHHHHHHHHHHhh----hCCCCCHHHHHHHHHhccccCCCCCCccccCCCCCCCCCCCccCCCccCcccc
Q 004824 496 FNLMSGTSMATPHVAGVAGLLKA----AHPDWSPAAIRSALVTTASPLDNTLSHIKDASNNNFPASPLDMGAGHINPNKA 571 (728)
Q Consensus 496 y~~~sGTSmAaP~VAG~aALl~~----~~p~lsp~~ik~~L~~TA~~~~~~g~~~~d~~~~~~~~~~~~~G~G~in~~~A 571 (728)
-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||++++.- .+|.||.|+|++++|
T Consensus 490 ~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i--------------d~faqG~GmlqVdkA 555 (1304)
T KOG1114|consen 490 SQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI--------------DSFAQGQGMLQVDKA 555 (1304)
T ss_pred hhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc--------------chhccCcceeehhHH
Confidence 67899999999999999999965 467899999999999999988642 567999999999999
Q ss_pred CC
Q 004824 572 LD 573 (728)
Q Consensus 572 l~ 573 (728)
.+
T Consensus 556 yE 557 (1304)
T KOG1114|consen 556 YE 557 (1304)
T ss_pred HH
Confidence 75
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.98 E-value=8.3e-31 Score=268.65 Aligned_cols=196 Identities=43% Similarity=0.570 Sum_probs=158.0
Q ss_pred CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCC-CChHHHHHHHHHHH-HCCCcEEEecc
Q 004824 178 SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHG-VYSSDVVAAIDQAL-QDGVDVLSLSL 255 (728)
Q Consensus 178 ~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g-~~~~~i~~ai~~a~-~~g~dVIN~Sl 255 (728)
...+..+||||||++|++....... .|+||+++|+.+|+....+ .....+++++++++ ..+++||||||
T Consensus 39 ~~~~~~~HGt~va~~i~~~~~~~~~---------~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~ 109 (241)
T cd00306 39 DPDDGNGHGTHVAGIIAASANNGGG---------VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSL 109 (241)
T ss_pred CCCCCCCcHHHHHHHHhcCCCCCCC---------EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCC
Confidence 3456789999999999998643321 6999999999999987765 67788999999999 89999999999
Q ss_pred ccCCCCCCChhhHHHHHHHHHHhC-CcEEEEecCCCCCCCC---ccccCCCceEEeccccccceeeeEEEcCCCcEEeee
Q 004824 256 GLSLNGIFLEDDAIAVATFAAMEK-GVLVVASAGNDGPSYW---TLINGAPWLLTVGAGTIDREFEGSLTLGNGVQINFK 331 (728)
Q Consensus 256 G~~~~~~~~~~~~~~~~~~~a~~~-Gi~vV~AAGN~g~~~~---~~~~~ap~vitVgast~~~~~~~~~~~~~g~~~~g~ 331 (728)
|.. ... ....+...+..+.++ |+++|+||||.+.... ..+...+++|+||+.+.+.
T Consensus 110 g~~--~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 110 GGP--GSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCC--CCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 993 222 344566666777777 9999999999998776 4777889999999854221
Q ss_pred ecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCccccccccCccEEEee
Q 004824 332 SLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYIRSSFPAAFIN 411 (728)
Q Consensus 332 s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~~p~~~i~ 411 (728)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccc-cccCCCCCCCCCCCCCCcEEeCCCceeeccCCCCCccccccC
Q 004824 412 VNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVD-SYSSRGPFLSCPNIPKPDILAPGSLVLASWSPISSVAEVQSG 490 (728)
Q Consensus 412 ~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~ 490 (728)
... .++++| .|||+.|||.++......
T Consensus 170 ----------------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~---------- 197 (241)
T cd00306 170 ----------------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT---------- 197 (241)
T ss_pred ----------------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC----------
Confidence 112 444444 577999999999875111
Q ss_pred cccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 491 LLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 491 ~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
....+..++|||||||+|||++|||+|++|++++.++|++|++|
T Consensus 198 -~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 198 -GGGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -CCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 12688999999999999999999999999999999999999875
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4e-23 Score=234.72 Aligned_cols=249 Identities=33% Similarity=0.425 Sum_probs=186.9
Q ss_pred CCCCCC--CCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCc
Q 004824 96 SGAWPA--SNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLK 173 (728)
Q Consensus 96 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~ 173 (728)
...|.. +++|+|++|+|||+||+..||+|.+... ..++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~---------------------------~~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV---------------------------AGGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhcccc---------------------------cccccccCC--------
Confidence 457777 8999999999999999999999986411 002222211
Q ss_pred cCCC-CCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCC-C-CChHHHHHHHHHHHHCC--C
Q 004824 174 VRMN-SPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRH-G-VYSSDVVAAIDQALQDG--V 248 (728)
Q Consensus 174 ~~~~-~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~-g-~~~~~i~~ai~~a~~~g--~ 248 (728)
.. ...|..+|||||++++++....+ .....|+||+++++.++++... + ....+++.+|+++++.+ +
T Consensus 175 --~~~~~~d~~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~ 245 (508)
T COG1404 175 --PEPPFLDDNGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPA 245 (508)
T ss_pred --CCCCCCCCCCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCC
Confidence 01 24688999999999999843111 1113899999999999999865 5 67778899999999999 9
Q ss_pred cEEEeccccCCCCCCChhhHHHHHHHHHHhCC-cEEEEecCCCCCCCC----ccccCC--CceEEeccccccceeeeEEE
Q 004824 249 DVLSLSLGLSLNGIFLEDDAIAVATFAAMEKG-VLVVASAGNDGPSYW----TLINGA--PWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 249 dVIN~SlG~~~~~~~~~~~~~~~~~~~a~~~G-i~vV~AAGN~g~~~~----~~~~~a--p~vitVgast~~~~~~~~~~ 321 (728)
++||||+|. .........+..++..+...| +++|+|+||.+.... ..+... +.+++||+..
T Consensus 246 ~~in~s~g~--~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~---------- 313 (508)
T COG1404 246 DVINLSLGG--SLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD---------- 313 (508)
T ss_pred cEEEecCCC--CccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC----------
Confidence 999999998 322234455566666777766 999999999997753 122222 3566666532
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceee-----
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLA----- 476 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~s----- 476 (728)
..+.++.||++|+. -..++.|||.+|.+
T Consensus 314 -----------------------------------------~~~~~~~~s~~g~~------~~~~~~apg~~i~~~~~~~ 346 (508)
T COG1404 314 -----------------------------------------LSDTVASFSNDGSP------TGVDIAAPGVNILSLSAVN 346 (508)
T ss_pred -----------------------------------------CCCccccccccCCC------CCcceeCCCccccccccce
Confidence 12367899999975 13499999999988
Q ss_pred ccCCCCCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCC-CCCHHHHHHHHHhcccc
Q 004824 477 SWSPISSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHP-DWSPAAIRSALVTTASP 538 (728)
Q Consensus 477 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~lsp~~ik~~L~~TA~~ 538 (728)
.+++. ...|..++||||++|||+|++||+++.+| .+++.+++..+..++..
T Consensus 347 ~~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~ 398 (508)
T COG1404 347 TLPGD-----------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL 398 (508)
T ss_pred eeeCC-----------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc
Confidence 44431 02499999999999999999999999999 89999999998888874
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=7.9e-21 Score=193.08 Aligned_cols=308 Identities=19% Similarity=0.225 Sum_probs=184.8
Q ss_pred CCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCccC
Q 004824 96 SGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKVR 175 (728)
Q Consensus 96 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~~ 175 (728)
..+|..+++|++|+++|+|.||||.||++... |+ --..++|.++ ++.+
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------yn-------aeasydfssn-------dpfp 198 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------YN-------AEASYDFSSN-------DPFP 198 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------cC-------ceeecccccC-------CCCC
Confidence 45899999999999999999999999999743 11 1123334332 1222
Q ss_pred CCCCCC--CCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH-CCCcEEE
Q 004824 176 MNSPRD--GSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ-DGVDVLS 252 (728)
Q Consensus 176 ~~~~~d--~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN 252 (728)
+....| .+.|||.|||-+++...++ .+| .|||.+.++..+|+++. .+..|+++|-...-+ ...+|.+
T Consensus 199 yprytddwfnshgtrcagev~aardng--icg------vgvaydskvagirmldq--pymtdlieansmghep~kihiys 268 (629)
T KOG3526|consen 199 YPRYTDDWFNSHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYS 268 (629)
T ss_pred CCcccchhhhccCccccceeeeeccCC--cee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEe
Confidence 222223 5789999999988776443 444 59999999999999865 556666654332222 2478999
Q ss_pred eccccCCCCCCChh---hHHHHHHHHHH-----hCCcEEEEecCCCCCCCCc-cc--cCCCceEEeccccccceeeeEEE
Q 004824 253 LSLGLSLNGIFLED---DAIAVATFAAM-----EKGVLVVASAGNDGPSYWT-LI--NGAPWLLTVGAGTIDREFEGSLT 321 (728)
Q Consensus 253 ~SlG~~~~~~~~~~---~~~~~~~~~a~-----~~Gi~vV~AAGN~g~~~~~-~~--~~ap~vitVgast~~~~~~~~~~ 321 (728)
.|||.. +.....+ +...+++.+-+ ..|-++|+|.|..|..... .. ..+-|.|++-+.-.|
T Consensus 269 aswgpt-ddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaind-------- 339 (629)
T KOG3526|consen 269 ASWGPT-DDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAIND-------- 339 (629)
T ss_pred cccCcC-CCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcC--------
Confidence 999985 2222111 22222222222 3578999999998865422 22 234577776542111
Q ss_pred cCCCcEEeeeecCCCCCCCCeeeEEEccCCCCCccCccCcceEEEEccCCchhHHHHHHHHcCceEEEEecCCCcccccc
Q 004824 322 LGNGVQINFKSLYPGNSSPSQVSLAFMDACDSVTELKKVINSIVVCREDSSISSQIDNAVAAGVLGAVFISNSALLEVYI 401 (728)
Q Consensus 322 ~~~g~~~~g~s~~~~~~~~~~~~lv~~~~c~~~~~~~~~~gkiv~~~g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 401 (728)
|+.- -|++.|.
T Consensus 340 ---g~na-----------------hydescs------------------------------------------------- 350 (629)
T KOG3526|consen 340 ---GENA-----------------HYDESCS------------------------------------------------- 350 (629)
T ss_pred ---Cccc-----------------cccchhh-------------------------------------------------
Confidence 1100 0111111
Q ss_pred ccCccEEEeecccHHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCCCCCCCCCCcEEeCCCceeeccCCC
Q 004824 402 RSSFPAAFINVNDGQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFLSCPNIPKPDILAPGSLVLASWSPI 481 (728)
Q Consensus 402 ~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~~~~~~lKPDI~APG~~I~sa~~~~ 481 (728)
.-..+.||+-|.++.. | +-.+.
T Consensus 351 ------------------------------------------stlastfsng~rnpet-----------g--vattd--- 372 (629)
T KOG3526|consen 351 ------------------------------------------STLASTFSNGGRNPET-----------G--VATTD--- 372 (629)
T ss_pred ------------------------------------------HHHHHHhhcCCcCCCc-----------c--eeeec---
Confidence 0123567776654421 1 11110
Q ss_pred CCccccccCcccCCceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHHHHhccccCCCCCCc--c-ccCCCCCCCCCC
Q 004824 482 SSVAEVQSGLLYSNFNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSALVTTASPLDNTLSH--I-KDASNNNFPASP 558 (728)
Q Consensus 482 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~L~~TA~~~~~~g~~--~-~d~~~~~~~~~~ 558 (728)
-.+......||||.|+|-.||+.||-++++|.|+..+++.+-.-|..+..-.... + +.... .....+
T Consensus 373 ---------lyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mng-vglefn 442 (629)
T KOG3526|consen 373 ---------LYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNG-VGLEFN 442 (629)
T ss_pred ---------cccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccc-cceeee
Confidence 0013445689999999999999999999999999999999888777654321110 0 00000 222334
Q ss_pred CccCCCccCccccCCCCceecCChhhHHHHHHhcCC
Q 004824 559 LDMGAGHINPNKALDPGLVYDATAEDYIKLLCAMNY 594 (728)
Q Consensus 559 ~~~G~G~in~~~Al~~~lv~~~~~~dy~~~lc~~~~ 594 (728)
..||+|.+|+.+-+....-+...+. .|-|..|.
T Consensus 443 hlfgfgvldagamv~lak~wktvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 443 HLFGFGVLDAGAMVMLAKAWKTVPP---RYHCTAGL 475 (629)
T ss_pred cccccccccHHHHHHHHHHhccCCC---ceeecccc
Confidence 5799999998776554333333333 35677664
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=99.73 E-value=4.2e-17 Score=177.76 Aligned_cols=101 Identities=24% Similarity=0.279 Sum_probs=81.3
Q ss_pred ccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHC---CCcEEEeccccCCCCCC---ChhhHHHHHHHHHHhCCcEE
Q 004824 210 IARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQD---GVDVLSLSLGLSLNGIF---LEDDAIAVATFAAMEKGVLV 283 (728)
Q Consensus 210 ~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~---g~dVIN~SlG~~~~~~~---~~~~~~~~~~~~a~~~Gi~v 283 (728)
.+.||||+|+|+.|++++.. ...++.++.+++.+ +++|||+|||.. ... .+.+.+..++.+|..+||+|
T Consensus 82 ~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~--e~~~~~~~~~~~~~~~~~a~~~Gitv 156 (361)
T cd04056 82 YAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEP--EQSLPPAYAQRVCNLFAQAAAQGITV 156 (361)
T ss_pred HHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCcc--ccccCHHHHHHHHHHHHHHHhCCeEE
Confidence 35899999999999997542 45678889999887 999999999994 222 23466777888899999999
Q ss_pred EEecCCCCCCCC-----------ccccCCCceEEeccccccce
Q 004824 284 VASAGNDGPSYW-----------TLINGAPWLLTVGAGTIDRE 315 (728)
Q Consensus 284 V~AAGN~g~~~~-----------~~~~~ap~vitVgast~~~~ 315 (728)
|+|+||+|.... ..+..+|||++||+++....
T Consensus 157 vaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 157 LAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999999997653 34678899999999876554
No 44
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=99.30 E-value=1.4e-11 Score=116.39 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=94.2
Q ss_pred CCeeeEEEccCCCCCccCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cccccc--cCccEEEeeccc
Q 004824 340 PSQVSLAFMDACDSVTELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LEVYIR--SSFPAAFINVND 414 (728)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~~~--~~~p~~~i~~~~ 414 (728)
....+++|.+.|...++... ++|||+||+ +.|.+.+|..+++++||.|+|++|+... ...... ..+|++.|+..+
T Consensus 25 ~~~~~lv~~g~g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~~~~~~~iP~v~Is~~d 104 (143)
T cd02133 25 GKTYELVDAGLGTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGTLGEAVFIPVVFISKED 104 (143)
T ss_pred CcEEEEEEccCCchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCcccccCCCCCeEeEEEecHHH
Confidence 46889999888888777766 999999999 9999999999999999999999998865 222222 234999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEeeeeEecccCCCccccccCCCCCC
Q 004824 415 GQTIIDYIKKCDNPTGSLQFRKTVIGTKPAPMVDSYSSRGPFL 457 (728)
Q Consensus 415 g~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSS~GP~~ 457 (728)
|+.|++|+++ +++|.+..+.. ...++.++.||||||.-
T Consensus 105 G~~L~~~l~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 105 GEALKAALES----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred HHHHHHHHhC----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 9999999987 67777777665 56778899999999963
No 45
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=99.21 E-value=9.2e-11 Score=108.39 Aligned_cols=110 Identities=33% Similarity=0.511 Sum_probs=89.9
Q ss_pred EEcCCCcEEeeeecCCCCCCCCeeeEEE---------ccCCCCCccCcc-CcceEEEEc-cCC-chhHHHHHHHHcCceE
Q 004824 320 LTLGNGVQINFKSLYPGNSSPSQVSLAF---------MDACDSVTELKK-VINSIVVCR-EDS-SISSQIDNAVAAGVLG 387 (728)
Q Consensus 320 ~~~~~g~~~~g~s~~~~~~~~~~~~lv~---------~~~c~~~~~~~~-~~gkiv~~~-g~~-~~~~~~~~~~~~Ga~g 387 (728)
++|+||+++.|++++.+.. ..+++++ ...|.+..+.+. ++||||+|+ +.| .+.+|..+++++||.|
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~~~GA~g 79 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVKAAGGAG 79 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHHHcCCcE
Confidence 6789999999999997664 3455654 267988888766 999999999 888 8999999999999999
Q ss_pred EEEecCCCc-cccccc-cCccEEEeecccHHHHHHHHHhCCCCeEE
Q 004824 388 AVFISNSAL-LEVYIR-SSFPAAFINVNDGQTIIDYIKKCDNPTGS 431 (728)
Q Consensus 388 ~i~~n~~~~-~~~~~~-~~~p~~~i~~~~g~~l~~~~~~~~~~~~~ 431 (728)
+|++++... ...... ..+|++.|+..+|+.|++|++++.+++++
T Consensus 80 vI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 80 MILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred EEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 999998766 222222 34599999999999999999988776654
No 46
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.63 E-value=3.1e-07 Score=82.92 Aligned_cols=83 Identities=19% Similarity=0.257 Sum_probs=59.8
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEec--------CCC----------e-EEEEEeceEEEeccCeeEEEEEEEEecccC--
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTG--------IDG----------L-KVYVEPRRLVFKQKYEKQSYKLTLEGPKLL-- 694 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~--------~~g----------~-~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~-- 694 (728)
...+++.+|+|.|+.+.+|++++.. ..| . .+...|.+++++ +|++++|+|+|+.++..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~-ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVP-AGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEEC-CCCEEEEEEEEEehhcCCc
Confidence 3588888999999999999998761 111 1 567778889998 89999999999996533
Q ss_pred -CCceEEEEEEEEeCCCCcEEEeEEE
Q 004824 695 -EKDVVYGSISWVDDDGRYEVRSPIV 719 (728)
Q Consensus 695 -~~~~~~G~i~~~~~~~~~~v~~P~~ 719 (728)
+..+++|+|.++++++.+.+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 3679999999999755569999996
No 47
>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []. The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A ....
Probab=98.58 E-value=7.7e-08 Score=85.00 Aligned_cols=81 Identities=22% Similarity=0.288 Sum_probs=61.1
Q ss_pred eeeEE------EccCCCCCccCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-----cc-cccccCccE
Q 004824 342 QVSLA------FMDACDSVTELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-----LE-VYIRSSFPA 407 (728)
Q Consensus 342 ~~~lv------~~~~c~~~~~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-----~~-~~~~~~~p~ 407 (728)
..+|| ....|.+...... ++||||||+ |.|.|.+|..+++++||.|+|++|.... .. ......+|+
T Consensus 7 ~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~ 86 (101)
T PF02225_consen 7 TGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPV 86 (101)
T ss_dssp EEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEE
T ss_pred EEEEEEecCCCCcccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEE
Confidence 45666 3355666666666 999999999 9999999999999999999999992221 11 112234599
Q ss_pred EEeecccHHHHHHHH
Q 004824 408 AFINVNDGQTIIDYI 422 (728)
Q Consensus 408 ~~i~~~~g~~l~~~~ 422 (728)
++|+..+|+.|++|+
T Consensus 87 v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 87 VFISYEDGEALLAYI 101 (101)
T ss_dssp EEE-HHHHHHHHHHH
T ss_pred EEeCHHHHhhhhccC
Confidence 999999999999985
No 48
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.50 E-value=4.7e-07 Score=82.21 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=68.3
Q ss_pred cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--c-c--cccc-----cCccEEEeecccHHH
Q 004824 349 DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--L-E--VYIR-----SSFPAAFINVNDGQT 417 (728)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~-~--~~~~-----~~~p~~~i~~~~g~~ 417 (728)
..|.+....++++|||+|++ |.|.|.+|..+++++||.++|++|+... . . +..+ .++|+++|+..+|+.
T Consensus 22 ~gC~~~~~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG~~ 101 (118)
T cd02127 22 EACEELRNIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNGYM 101 (118)
T ss_pred ccCCCCCCccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHHHH
Confidence 67987554344999999999 9999999999999999999999998654 1 1 1121 245999999999999
Q ss_pred HHHHHHhCCCCeEEEE
Q 004824 418 IIDYIKKCDNPTGSLQ 433 (728)
Q Consensus 418 l~~~~~~~~~~~~~i~ 433 (728)
|++.+..+..+++.|.
T Consensus 102 L~~~l~~g~~~~~~~~ 117 (118)
T cd02127 102 IRKTLERLGLPYAIIN 117 (118)
T ss_pred HHHHHHcCCceEEeee
Confidence 9999998877766553
No 49
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=98.49 E-value=1.1e-06 Score=80.53 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=69.7
Q ss_pred eeeEEEc--cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCC-Cc-cc-ccc---ccCccEEEeec
Q 004824 342 QVSLAFM--DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNS-AL-LE-VYI---RSSFPAAFINV 412 (728)
Q Consensus 342 ~~~lv~~--~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~-~~-~~-~~~---~~~~p~~~i~~ 412 (728)
.-++++. ..|.+..+..+++|||+|++ |.|.|.+|..+++++||.|+|++|+. .. .. ... ...+|++.|+.
T Consensus 23 ~g~lv~~~~~gC~~~~~~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~ 102 (122)
T cd02130 23 TGPLVVVPNLGCDAADYPASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQ 102 (122)
T ss_pred EEEEEEeCCCCCCcccCCcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecH
Confidence 4556664 47987666445999999999 99999999999999999999999987 33 11 111 22349999999
Q ss_pred ccHHHHHHHHHhCCCCeE
Q 004824 413 NDGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 413 ~~g~~l~~~~~~~~~~~~ 430 (728)
++|+.|++.++++.+.++
T Consensus 103 ~~G~~L~~~l~~g~~v~~ 120 (122)
T cd02130 103 EDGKALVAALANGGEVSA 120 (122)
T ss_pred HHHHHHHHHHhcCCcEEE
Confidence 999999999987766554
No 50
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=98.48 E-value=1.3e-07 Score=80.17 Aligned_cols=67 Identities=40% Similarity=0.683 Sum_probs=50.1
Q ss_pred cccHHHHHHHHhccccccccccccccCCcccEEEEecceeeEEEEEeCHHHHHHHhcCCCeEEEecCCccccc
Q 004824 10 YSSLYTWYLFMLCSVSESSKATATSSTISSKLVYTYANSIHGFSATLTVSELETLKKLPGYISSTPDRPLAVH 82 (728)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~~~~ngfs~~l~~~~~~~L~~~p~V~~V~~~~~~~~~ 82 (728)
...|.+|+.+++.+..... ...+.+++|+|+..||||+++++++++++|+++|+|++|+|++.+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 16 FSSHKSWQASILKSALKSA------SSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHH----HHHHTH-------TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred HHHHHHHHHHHHhhhhhhh------cccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 5678889998876532210 134689999999999999999999999999999999999999988764
No 51
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.47 E-value=4.1e-07 Score=83.48 Aligned_cols=81 Identities=16% Similarity=0.207 Sum_probs=65.9
Q ss_pred cCCCCCccCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--c--cccc---ccCccEEEeecccHHHHH
Q 004824 349 DACDSVTELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--L--EVYI---RSSFPAAFINVNDGQTII 419 (728)
Q Consensus 349 ~~c~~~~~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~--~~~~---~~~~p~~~i~~~~g~~l~ 419 (728)
..|.+..+... ++|||+||+ |.|.+.+|..+++++||.|+|++|+... . .... ...+|++.|+..+|+.|+
T Consensus 30 ~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l~ 109 (122)
T cd04816 30 AGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAALR 109 (122)
T ss_pred cCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHHH
Confidence 67988777765 999999999 9999999999999999999999998764 1 1111 123499999999999999
Q ss_pred HHHHhCCCCe
Q 004824 420 DYIKKCDNPT 429 (728)
Q Consensus 420 ~~~~~~~~~~ 429 (728)
+++..+.+.+
T Consensus 110 ~~l~~g~~v~ 119 (122)
T cd04816 110 RRLGAGETLE 119 (122)
T ss_pred HHHcCCCEEE
Confidence 9998765433
No 52
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=98.46 E-value=6e-07 Score=81.91 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=66.8
Q ss_pred cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cccc--c--cc-CccEEEeecccHHHHHHH
Q 004824 349 DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LEVY--I--RS-SFPAAFINVNDGQTIIDY 421 (728)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~--~--~~-~~p~~~i~~~~g~~l~~~ 421 (728)
..|.+..+.++++|||++|+ +.|.+.+|..+++++||.|+|++|+... .... . .. .+|++.|+.++|+.|++|
T Consensus 28 ~~C~~~~~~~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~~~ 107 (118)
T cd04818 28 DGCTAFTNAAAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALKAA 107 (118)
T ss_pred cccCCCCcCCCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHHHH
Confidence 67988887556999999999 9999999999999999999999988774 1111 1 12 349999999999999999
Q ss_pred HHhCCCCeE
Q 004824 422 IKKCDNPTG 430 (728)
Q Consensus 422 ~~~~~~~~~ 430 (728)
++.+...++
T Consensus 108 l~~g~~v~v 116 (118)
T cd04818 108 LAAGGTVTV 116 (118)
T ss_pred HhcCCcEEE
Confidence 987665443
No 53
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=7.1e-07 Score=98.68 Aligned_cols=160 Identities=19% Similarity=0.173 Sum_probs=99.5
Q ss_pred CCCCCCCCCCCCCcEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCccCcccCCceeeeeeeccccccccCCCCcc
Q 004824 95 LSGAWPASNYGKGVIIGLVDTGIWPESQSFSDEGMAKVPPRWKGECMSGVQFNSSLCNKKLIGARFFNKGLIANNPKLKV 174 (728)
Q Consensus 95 ~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~w~g~~~~g~~f~~~~~n~kiig~~~~~~~~~~~~~~~~~ 174 (728)
+...|..+++|+++.++|.|+|+...||+.... ....+.+++.... ..+.
T Consensus 22 v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-----~~p~ 71 (431)
T KOG3525|consen 22 VQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-----NDPE 71 (431)
T ss_pred eeeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-----CCcc
Confidence 467999999999999999999999999998742 1122223332211 1111
Q ss_pred CCCCCCCCCCChhhHHHHhccCCcCCCCcccccCcccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHH-CCCcEEEe
Q 004824 175 RMNSPRDGSGHGTHTSSIAAGNYVKGSSYFGYATGIARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQ-DGVDVLSL 253 (728)
Q Consensus 175 ~~~~~~d~~gHGThVAgiiaG~~~~~~~~~G~~~g~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~-~g~dVIN~ 253 (728)
+-.+......|||-|++-.+....+.. . ..|+++++++..++++.. ...+...+...... .-+++-+.
T Consensus 72 ~~~~~~~~~~~g~~Ca~~~a~~~~~~~--C------~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~sc 140 (431)
T KOG3525|consen 72 PRCDGTNENKHGTRCAGCVAARANNLT--C------GVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSC 140 (431)
T ss_pred cccCCCCccccCCCCCcccccccCCCc--C------CCCcccCccccceeeeee---ecccceecccccCCCCCceeecC
Confidence 112222357899999999998752221 1 269999999999999753 11133333333333 34789999
Q ss_pred ccccCCCCCC--ChhhHHHHHHHH-----HHhCCcEEEEecCCCCCCCC
Q 004824 254 SLGLSLNGIF--LEDDAIAVATFA-----AMEKGVLVVASAGNDGPSYW 295 (728)
Q Consensus 254 SlG~~~~~~~--~~~~~~~~~~~~-----a~~~Gi~vV~AAGN~g~~~~ 295 (728)
|||..+.... ........++.. ...+|-+.++|.||.|....
T Consensus 141 sw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~d 189 (431)
T KOG3525|consen 141 SWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCGD 189 (431)
T ss_pred cCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcccccc
Confidence 9998511111 111122222222 34678999999999887654
No 54
>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like. This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase
Probab=98.40 E-value=1e-06 Score=82.25 Aligned_cols=83 Identities=17% Similarity=0.158 Sum_probs=67.5
Q ss_pred cCCCCCcc--Ccc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCC-c-ccc--ccc--cCccEEEeecccHHHH
Q 004824 349 DACDSVTE--LKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSA-L-LEV--YIR--SSFPAAFINVNDGQTI 418 (728)
Q Consensus 349 ~~c~~~~~--~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~-~-~~~--~~~--~~~p~~~i~~~~g~~l 418 (728)
..|.+... .+. +.|+|+|++ |.|.|.+|..+++++||.++|++|+.. . ..+ ..+ ..+|+++|+..+|+.|
T Consensus 45 ~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~l 124 (138)
T cd02122 45 YGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGMEI 124 (138)
T ss_pred CCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHHH
Confidence 67987776 333 999999999 999999999999999999999999986 2 111 222 2459999999999999
Q ss_pred HHHHHhCCCCeEE
Q 004824 419 IDYIKKCDNPTGS 431 (728)
Q Consensus 419 ~~~~~~~~~~~~~ 431 (728)
++++..+.+.+++
T Consensus 125 ~~~l~~G~~Vtv~ 137 (138)
T cd02122 125 LELLERGISVTMV 137 (138)
T ss_pred HHHHHcCCcEEEe
Confidence 9999887665544
No 55
>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like. This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.40 E-value=1.1e-06 Score=79.43 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=67.6
Q ss_pred CeeeEEEc---cCCCCCccCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cc--cc---cccCccEEE
Q 004824 341 SQVSLAFM---DACDSVTELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LE--VY---IRSSFPAAF 409 (728)
Q Consensus 341 ~~~~lv~~---~~c~~~~~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~--~~---~~~~~p~~~ 409 (728)
..+|++.. ..|.+..+.+. ++|||+|++ |.|.|.+|..+++.+||.|+|++|+... .. .. ...++|+++
T Consensus 20 ~~~~~~~~~~~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~ 99 (120)
T cd02129 20 TLLPLRNLTSSVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVAL 99 (120)
T ss_pred cceeeecCCCcCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEE
Confidence 35666663 67998888765 999999999 9999999999999999999999999864 11 11 123459999
Q ss_pred eecccHHHHHHHHH
Q 004824 410 INVNDGQTIIDYIK 423 (728)
Q Consensus 410 i~~~~g~~l~~~~~ 423 (728)
|+..+|+.|++.+.
T Consensus 100 Is~~dG~~i~~~l~ 113 (120)
T cd02129 100 LSYKDMLDIQQTFG 113 (120)
T ss_pred EeHHHHHHHHHHhc
Confidence 99999999988775
No 56
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.7e-06 Score=99.09 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=59.6
Q ss_pred ccccccCCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCC-cEEEeccccCCC-CCCC--hhhHHHHHHHHHHhCCcEEEE
Q 004824 210 IARGIAPRACVAMYKAIWRHGVYSSDVVAAIDQALQDGV-DVLSLSLGLSLN-GIFL--EDDAIAVATFAAMEKGVLVVA 285 (728)
Q Consensus 210 ~~~GvAP~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~-dVIN~SlG~~~~-~~~~--~~~~~~~~~~~a~~~Gi~vV~ 285 (728)
...-+||+|+|..+-+ . ......+..|+.+....=+ -+|-.||+.... .... .-+.+......|..+||.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p-~~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--P-NPLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--C-CCceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3467999999998866 2 1222223333333222211 333356665201 1112 345556666788899999999
Q ss_pred ecCCCCCCCCc--------cccCCCceEEecc
Q 004824 286 SAGNDGPSYWT--------LINGAPWLLTVGA 309 (728)
Q Consensus 286 AAGN~g~~~~~--------~~~~ap~vitVga 309 (728)
|+|.+|....+ .+..+|++++||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876643 3457899999998
No 57
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=98.31 E-value=1.6e-06 Score=79.70 Aligned_cols=81 Identities=23% Similarity=0.318 Sum_probs=64.1
Q ss_pred cCCCCCc--cCcc-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--cccc------cccCccEEEeecccHH
Q 004824 349 DACDSVT--ELKK-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--LEVY------IRSSFPAAFINVNDGQ 416 (728)
Q Consensus 349 ~~c~~~~--~~~~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~~~------~~~~~p~~~i~~~~g~ 416 (728)
..|.+.. +... ++|||++|+ +.|.+.+|..+++++||.|+|++++... .... ....+|++.|+.++|+
T Consensus 31 ~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g~ 110 (126)
T cd00538 31 VGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADGE 110 (126)
T ss_pred EEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHHH
Confidence 4676665 5555 999999999 9999999999999999999999998763 1111 1123499999999999
Q ss_pred HHHHHHHhCCCCe
Q 004824 417 TIIDYIKKCDNPT 429 (728)
Q Consensus 417 ~l~~~~~~~~~~~ 429 (728)
.|++|+.+..+.+
T Consensus 111 ~l~~~~~~~~~v~ 123 (126)
T cd00538 111 ALLSLLEAGKTVT 123 (126)
T ss_pred HHHHHHhcCCceE
Confidence 9999998755433
No 58
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=98.30 E-value=2e-06 Score=79.22 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=64.5
Q ss_pred cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCcc-----c---ccc------ccCccEEEeecc
Q 004824 349 DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSALL-----E---VYI------RSSFPAAFINVN 413 (728)
Q Consensus 349 ~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~-----~---~~~------~~~~p~~~i~~~ 413 (728)
..|.+......++|||+|++ |.|.|.+|..+++++||.++|++|+.... . +.. ...+|+++|+..
T Consensus 28 ~gC~~~~~~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~~~ 107 (126)
T cd02126 28 RACSEITNAEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLFSK 107 (126)
T ss_pred hcccCCCCccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEEHH
Confidence 67987655334999999999 99999999999999999999999876531 1 111 123499999999
Q ss_pred cHHHHHHHHHhCCCCeE
Q 004824 414 DGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 414 ~g~~l~~~~~~~~~~~~ 430 (728)
+|+.|+..++.+...++
T Consensus 108 dG~~L~~~l~~~~~~~~ 124 (126)
T cd02126 108 EGSKLLAAIKEHQNVEV 124 (126)
T ss_pred HHHHHHHHHHhCCceEE
Confidence 99999999987655443
No 59
>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10. This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.29 E-value=3.9e-06 Score=78.68 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=67.8
Q ss_pred eeeEEEc---cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cccc-----c--ccCccEEE
Q 004824 342 QVSLAFM---DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LEVY-----I--RSSFPAAF 409 (728)
Q Consensus 342 ~~~lv~~---~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~-----~--~~~~p~~~ 409 (728)
..+++.. ..|.+.. ..++|||+|++ |.|.|.+|..+++++||.++|++|+... ..+. . ...+|++.
T Consensus 39 ~~~lv~~~~~~gC~~~~--~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~ 116 (139)
T cd02132 39 KTRAVLANPLDCCSPST--SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVM 116 (139)
T ss_pred EEEEEECCcccccCCCC--cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEE
Confidence 4455542 6788654 35999999999 9999999999999999999999988764 2221 1 12459999
Q ss_pred eecccHHHHHHHHHhCCCCeE
Q 004824 410 INVNDGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 410 i~~~~g~~l~~~~~~~~~~~~ 430 (728)
|+..+|+.|++.+..+...++
T Consensus 117 Is~~~G~~L~~~l~~g~~Vtv 137 (139)
T cd02132 117 IPQSAGDALNKSLDQGKKVEV 137 (139)
T ss_pred ecHHHHHHHHHHHHcCCcEEE
Confidence 999999999999987665443
No 60
>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like. This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.20 E-value=1.3e-05 Score=74.10 Aligned_cols=80 Identities=25% Similarity=0.308 Sum_probs=61.3
Q ss_pred cCCCCCccCc-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-ccccc-cc-CccEEEeecccHHHHHHHHH
Q 004824 349 DACDSVTELK-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LEVYI-RS-SFPAAFINVNDGQTIIDYIK 423 (728)
Q Consensus 349 ~~c~~~~~~~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~~~~-~~-~~p~~~i~~~~g~~l~~~~~ 423 (728)
..|.+...+. +++|||+|++ |.|.|.+|..+++++||.++|++|+... ..... +. .+|.+.+ ..+|+.|++.++
T Consensus 42 ~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l~ 120 (129)
T cd02124 42 DACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDALA 120 (129)
T ss_pred ccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHHh
Confidence 6798765443 4999999999 9999999999999999999999998765 21112 22 2355555 999999999987
Q ss_pred hCCCCe
Q 004824 424 KCDNPT 429 (728)
Q Consensus 424 ~~~~~~ 429 (728)
.+...+
T Consensus 121 ~G~~vt 126 (129)
T cd02124 121 AGSNVT 126 (129)
T ss_pred cCCeEE
Confidence 665433
No 61
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=98.20 E-value=5.3e-06 Score=77.14 Aligned_cols=80 Identities=18% Similarity=0.263 Sum_probs=60.6
Q ss_pred eeEEEccCCCCCccCcc-CcceEEEEc-cCCc-----hhHHHHHHHHcCceEEEEecCC--Cc--ccccc----ccCccE
Q 004824 343 VSLAFMDACDSVTELKK-VINSIVVCR-EDSS-----ISSQIDNAVAAGVLGAVFISNS--AL--LEVYI----RSSFPA 407 (728)
Q Consensus 343 ~~lv~~~~c~~~~~~~~-~~gkiv~~~-g~~~-----~~~~~~~~~~~Ga~g~i~~n~~--~~--~~~~~----~~~~p~ 407 (728)
-++++...+. .++... ++|||+|++ |.|. |.+|..+++++||.|+|+||+. .. ..... +..+|+
T Consensus 38 g~lv~~g~~g-~d~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~ 116 (139)
T cd04817 38 GSLYYCGTSG-GSYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPS 116 (139)
T ss_pred EEEEEccCCC-ccccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeE
Confidence 4566542211 134443 999999999 9999 9999999999999999999998 43 11222 224599
Q ss_pred EEeecccHHHHHHHHH
Q 004824 408 AFINVNDGQTIIDYIK 423 (728)
Q Consensus 408 ~~i~~~~g~~l~~~~~ 423 (728)
+.|+..+|+.|+..+.
T Consensus 117 v~is~~dG~~L~~~l~ 132 (139)
T cd04817 117 VSVDRADGQALLAALG 132 (139)
T ss_pred EEeeHHHHHHHHHHhc
Confidence 9999999999998874
No 62
>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2. A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola
Probab=98.15 E-value=2.3e-05 Score=72.33 Aligned_cols=86 Identities=19% Similarity=0.095 Sum_probs=69.0
Q ss_pred CCeeeEEEccCCCCCccCcc-CcceEEEEc-cCC--chhHHHHHHHHcCceEEEEecCCCc-cc--c-c----c-ccCcc
Q 004824 340 PSQVSLAFMDACDSVTELKK-VINSIVVCR-EDS--SISSQIDNAVAAGVLGAVFISNSAL-LE--V-Y----I-RSSFP 406 (728)
Q Consensus 340 ~~~~~lv~~~~c~~~~~~~~-~~gkiv~~~-g~~--~~~~~~~~~~~~Ga~g~i~~n~~~~-~~--~-~----~-~~~~p 406 (728)
..+.++|+...+...++.+. ++|||++++ +.+ .+.+|..++.++||.|+|++|+... .. . . . ...+|
T Consensus 22 ~~~~~lV~~g~G~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~~~~~~~~~~~~~~IP 101 (127)
T cd04819 22 EAKGEPVDAGYGLPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPATGDEGTEDGPPSPIP 101 (127)
T ss_pred CeeEEEEEeCCCCHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcccccccccCCCCCCCC
Confidence 35788999877766666554 999999999 888 8899999999999999999987765 11 1 1 1 13459
Q ss_pred EEEeecccHHHHHHHHHhC
Q 004824 407 AAFINVNDGQTIIDYIKKC 425 (728)
Q Consensus 407 ~~~i~~~~g~~l~~~~~~~ 425 (728)
++.|+.+||+.|.+.++.+
T Consensus 102 ~v~Is~edg~~L~~~l~~g 120 (127)
T cd04819 102 AASVSGEDGLRLARVAERN 120 (127)
T ss_pred EEEEeHHHHHHHHHHHhcC
Confidence 9999999999999998764
No 63
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=98.14 E-value=1.2e-05 Score=74.05 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=63.9
Q ss_pred cCCCCCccC--c-----cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--cccc---------c--ccCccE
Q 004824 349 DACDSVTEL--K-----KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--LEVY---------I--RSSFPA 407 (728)
Q Consensus 349 ~~c~~~~~~--~-----~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~~~---------~--~~~~p~ 407 (728)
..|.+.... + ...++|+|++ |.|.|.+|..+++++||.++|++|+... ..+. . +-.+|+
T Consensus 23 ~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP~ 102 (127)
T cd02125 23 TGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIPS 102 (127)
T ss_pred ccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEeE
Confidence 578765442 1 2778999999 9999999999999999999999998764 1110 1 113599
Q ss_pred EEeecccHHHHHHHHHhCCCCeE
Q 004824 408 AFINVNDGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 408 ~~i~~~~g~~l~~~~~~~~~~~~ 430 (728)
++|+..+|+.|++.+..+...++
T Consensus 103 v~Is~~~G~~L~~~l~~g~~V~v 125 (127)
T cd02125 103 ALITKAFGEKLKKAISNGEMVVI 125 (127)
T ss_pred EEECHHHHHHHHHHHhcCCeEEE
Confidence 99999999999999987765544
No 64
>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1. A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid
Probab=98.09 E-value=7.9e-06 Score=74.03 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=60.2
Q ss_pred ccCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCcc---cccc---cc--CccEEEeecccHHHH
Q 004824 348 MDACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSALL---EVYI---RS--SFPAAFINVNDGQTI 418 (728)
Q Consensus 348 ~~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~---~~~~---~~--~~p~~~i~~~~g~~l 418 (728)
...|.+... ++++|||+|++ |.|.|.+|..+++++||.++|++|+.... .+.. .. .+|+++++..+|++|
T Consensus 27 ~~gC~~~~~-~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~~L 105 (117)
T cd04813 27 TDACSLQEH-AEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYHLL 105 (117)
T ss_pred CCCCCCCCc-CCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHHHH
Confidence 378976621 33999999999 99999999999999999999999887641 1111 11 349999999999999
Q ss_pred HHHHHh
Q 004824 419 IDYIKK 424 (728)
Q Consensus 419 ~~~~~~ 424 (728)
+.++..
T Consensus 106 ~~l~~~ 111 (117)
T cd04813 106 SSLLPK 111 (117)
T ss_pred HHhccc
Confidence 988653
No 65
>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce
Probab=98.02 E-value=1.6e-05 Score=75.88 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=64.2
Q ss_pred cCCCCCccCc---c-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--ccccc------ccCccEEEeecccH
Q 004824 349 DACDSVTELK---K-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--LEVYI------RSSFPAAFINVNDG 415 (728)
Q Consensus 349 ~~c~~~~~~~---~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~~~~------~~~~p~~~i~~~~g 415 (728)
..|.+....+ . +.|||++++ |.|.|.+|..+++++||.++|++|+... ..+.. .-++|+++|+..+|
T Consensus 51 ~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~dg 130 (153)
T cd02123 51 NACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKSTG 130 (153)
T ss_pred ccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHHH
Confidence 5898776543 4 999999999 9999999999999999999999998755 22222 12349999999999
Q ss_pred HHHHHHHHhCCC
Q 004824 416 QTIIDYIKKCDN 427 (728)
Q Consensus 416 ~~l~~~~~~~~~ 427 (728)
+.|+.++.....
T Consensus 131 ~~L~~~l~~~~~ 142 (153)
T cd02123 131 EILKKYASYEKG 142 (153)
T ss_pred HHHHHHHhcCCc
Confidence 999999876544
No 66
>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR). This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra
Probab=97.29 E-value=0.00039 Score=67.58 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=64.4
Q ss_pred eeeEEEccCCCCCccC-----c-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc--cc--------------
Q 004824 342 QVSLAFMDACDSVTEL-----K-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL--LE-------------- 398 (728)
Q Consensus 342 ~~~lv~~~~c~~~~~~-----~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~--~~-------------- 398 (728)
+-++||...|...++. . +++|||+|++ |.|.+.+|..+|+++||+|+|+|++... ..
T Consensus 30 ~g~lVyvn~G~~~Df~~L~~~gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~ 109 (183)
T cd02128 30 TGKLVYANYGRKKDFEDLQSVGVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGT 109 (183)
T ss_pred EEEEEEcCCCCHHHHHHHHhcCCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccC
Confidence 6688988777666553 3 3999999999 9999999999999999999999998421 00
Q ss_pred ---------------c-c----cccCccEEEeecccHHHHHHHHHh
Q 004824 399 ---------------V-Y----IRSSFPAAFINVNDGQTIIDYIKK 424 (728)
Q Consensus 399 ---------------~-~----~~~~~p~~~i~~~~g~~l~~~~~~ 424 (728)
. . .-..+|++-|+..+++.|++.+.-
T Consensus 110 GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 110 GDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred CCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCC
Confidence 0 0 012348899999999999998753
No 67
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=96.97 E-value=0.0024 Score=59.51 Aligned_cols=71 Identities=17% Similarity=0.113 Sum_probs=55.5
Q ss_pred CcceEEEEc-cCC------chhHH-------HHHHHHcCceEEEEecCCCc------cc-ccc---ccCccEEEeecccH
Q 004824 360 VINSIVVCR-EDS------SISSQ-------IDNAVAAGVLGAVFISNSAL------LE-VYI---RSSFPAAFINVNDG 415 (728)
Q Consensus 360 ~~gkiv~~~-g~~------~~~~~-------~~~~~~~Ga~g~i~~n~~~~------~~-~~~---~~~~p~~~i~~~~g 415 (728)
++||||+++ +.| .+..| ...++++||.|+|++|.... .. ... ...+|++.|+.+|+
T Consensus 38 v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is~ed~ 117 (134)
T cd04815 38 VKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAISVEDA 117 (134)
T ss_pred cCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEechhcH
Confidence 999999999 889 88888 79999999999999986422 11 111 12359999999999
Q ss_pred HHHHHHHHhCCCCeE
Q 004824 416 QTIIDYIKKCDNPTG 430 (728)
Q Consensus 416 ~~l~~~~~~~~~~~~ 430 (728)
..|.+.++.+...++
T Consensus 118 ~~L~r~l~~g~~v~~ 132 (134)
T cd04815 118 DMLERLAARGKPIRV 132 (134)
T ss_pred HHHHHHHhCCCCeEE
Confidence 999999887655443
No 68
>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like. This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower
Probab=95.94 E-value=0.012 Score=59.32 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=48.1
Q ss_pred CeeeEEEccCCCCCccC-----c-cCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc
Q 004824 341 SQVSLAFMDACDSVTEL-----K-KVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL 396 (728)
Q Consensus 341 ~~~~lv~~~~c~~~~~~-----~-~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 396 (728)
.+.++||...|...++. . +++|||||++ |.+.+.+|..+|+.+||.|+|++++...
T Consensus 45 v~g~lVyvnyG~~~D~~~L~~~gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~d 107 (220)
T cd02121 45 VTAELVYANYGSPEDFEYLEDLGIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPAD 107 (220)
T ss_pred ceEEEEEcCCCcHHHHHHHhhcCCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCchh
Confidence 47789999999877653 2 2999999999 9888899999999999999999998653
No 69
>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2). This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=95.89 E-value=0.0097 Score=55.61 Aligned_cols=54 Identities=13% Similarity=0.139 Sum_probs=44.7
Q ss_pred eeeEEEccCCCCCccC---cc--CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCC
Q 004824 342 QVSLAFMDACDSVTEL---KK--VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSA 395 (728)
Q Consensus 342 ~~~lv~~~~c~~~~~~---~~--~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~ 395 (728)
+-++||...+...++. .. ++|||+|++ |...+..|..+|+..||.|+|||.+..
T Consensus 16 tg~~VYvNyG~~eDf~~L~~~V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 16 QAEVVDVQYGSVEDLRRIRDNMNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred EEEEEEecCCCHHHHHHHHhCCCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 5678887666655533 12 999999999 999999999999999999999999854
No 70
>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a
Probab=95.75 E-value=0.027 Score=52.75 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=43.8
Q ss_pred CeeeEEEccC------CCCCccCcc-CcceEEEEc-cCC------------------chhHHHHHHHHcCceEEEEecCC
Q 004824 341 SQVSLAFMDA------CDSVTELKK-VINSIVVCR-EDS------------------SISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 341 ~~~~lv~~~~------c~~~~~~~~-~~gkiv~~~-g~~------------------~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
...++|+.+. |...++... ++||||++. |.| .+..|..+++++||.|+|++++.
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~gvIii~~~ 99 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGAAGVLIVHEL 99 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCCCcEEEEEeCC
Confidence 4678888644 444455554 999999998 766 46789999999999999999987
Q ss_pred Cc
Q 004824 395 AL 396 (728)
Q Consensus 395 ~~ 396 (728)
..
T Consensus 100 ~~ 101 (142)
T cd04814 100 AP 101 (142)
T ss_pred Cc
Confidence 65
No 71
>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.58 E-value=0.053 Score=50.45 Aligned_cols=56 Identities=18% Similarity=0.195 Sum_probs=42.9
Q ss_pred CeeeEEEccCC------CCCccCcc-CcceEEEEc-cCCc------------hhHHHHHHHHcCceEEEEecCCCc
Q 004824 341 SQVSLAFMDAC------DSVTELKK-VINSIVVCR-EDSS------------ISSQIDNAVAAGVLGAVFISNSAL 396 (728)
Q Consensus 341 ~~~~lv~~~~c------~~~~~~~~-~~gkiv~~~-g~~~------------~~~~~~~~~~~Ga~g~i~~n~~~~ 396 (728)
.+-++||...+ ...++... ++|||||+. +.|. +..|..++.++||.|+|++++...
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~~d~~~ 97 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITLTTPRS 97 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEEeCCcc
Confidence 46678876444 33444443 999999999 7653 678999999999999999998654
No 72
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=95.48 E-value=0.33 Score=42.62 Aligned_cols=81 Identities=16% Similarity=0.067 Sum_probs=59.0
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEeCCCCcEEE
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDDDGRYEVR 715 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~~~v~ 715 (728)
...+.+.+|+|.+.....|++.......-.++++|..-.+. +|++.+++|+|.+.. ..+.+.+.|.+.- ....+.
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~-PG~~~~~~V~~~~~~--~~g~~~~~l~i~~--e~~~~~ 94 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLA-PGESVELEVTFSPTK--PLGDYEGSLVITT--EGGSFE 94 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEEC-CCCEEEEEEEEEeCC--CCceEEEEEEEEE--CCeEEE
Confidence 34556668999999999999876543344566677766666 899999999999532 2356789898887 345777
Q ss_pred eEEEEE
Q 004824 716 SPIVAT 721 (728)
Q Consensus 716 ~P~~~~ 721 (728)
+|+-+.
T Consensus 95 i~v~a~ 100 (102)
T PF14874_consen 95 IPVKAE 100 (102)
T ss_pred EEEEEE
Confidence 777654
No 73
>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=95.38 E-value=0.063 Score=50.81 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=42.4
Q ss_pred CeeeEEEccCC------CCCccCcc-CcceEEEEc-cC------------------CchhHHHHHHHHcCceEEEEecCC
Q 004824 341 SQVSLAFMDAC------DSVTELKK-VINSIVVCR-ED------------------SSISSQIDNAVAAGVLGAVFISNS 394 (728)
Q Consensus 341 ~~~~lv~~~~c------~~~~~~~~-~~gkiv~~~-g~------------------~~~~~~~~~~~~~Ga~g~i~~n~~ 394 (728)
.+-++||...+ ....+... ++|||||+. +. |.+..|..++.+.||.|+|++++.
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIv~~d~ 99 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGAAAVIVVNGP 99 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCCeEEEEEeCC
Confidence 35678886544 33344443 999999996 42 567889999999999999999987
Q ss_pred Cc
Q 004824 395 AL 396 (728)
Q Consensus 395 ~~ 396 (728)
..
T Consensus 100 ~~ 101 (151)
T cd04822 100 NS 101 (151)
T ss_pred cc
Confidence 65
No 74
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.06 E-value=0.12 Score=43.13 Aligned_cols=59 Identities=20% Similarity=0.094 Sum_probs=38.2
Q ss_pred eeEEEEEEEEeCCCCC-eEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccC
Q 004824 636 VVKEFWRTVTNAEEVG-TAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLL 694 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 694 (728)
.+.+++.+|+|.|... ...++++..|.|-++...|..+.--++|++++++++|+++...
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 5788999999999654 4588888899999988888887644589999999999997644
No 75
>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=94.91 E-value=0.052 Score=59.22 Aligned_cols=75 Identities=20% Similarity=0.215 Sum_probs=59.4
Q ss_pred CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc------ccccc--ccCccEEEeecccHHHHHHHHHhCCCCeE
Q 004824 360 VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL------LEVYI--RSSFPAAFINVNDGQTIIDYIKKCDNPTG 430 (728)
Q Consensus 360 ~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~------~~~~~--~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 430 (728)
++||+++.. |.|.|.+|...++++||.+++++|+... ..... +-.+|++.+++++++.+.....++.+.++
T Consensus 94 l~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~V~~ 173 (541)
T KOG2442|consen 94 LSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDNVEL 173 (541)
T ss_pred ccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCeEEE
Confidence 899999999 9999999999999999999999999554 11112 22349999999999999987666665555
Q ss_pred EEEe
Q 004824 431 SLQF 434 (728)
Q Consensus 431 ~i~~ 434 (728)
.+..
T Consensus 174 ~lYa 177 (541)
T KOG2442|consen 174 ALYA 177 (541)
T ss_pred EEEC
Confidence 5443
No 76
>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]
Probab=92.75 E-value=0.12 Score=47.85 Aligned_cols=96 Identities=15% Similarity=0.202 Sum_probs=69.7
Q ss_pred CeeeEEEc---cCCCCCccCccCcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCc-cc------cccc-----cC
Q 004824 341 SQVSLAFM---DACDSVTELKKVINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSAL-LE------VYIR-----SS 404 (728)
Q Consensus 341 ~~~~lv~~---~~c~~~~~~~~~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~-~~------~~~~-----~~ 404 (728)
+.+++|.. ..|....-.-...|.|++++ |.|+|..|..+++++||..+|+...... .+ +..| ..
T Consensus 64 e~~~lV~adPp~aC~elrN~~f~~d~vaL~eRGeCSFl~Ktl~~e~aGa~aiiitd~~~~~~sf~~YveMI~D~sq~~An 143 (193)
T KOG3920|consen 64 ENLELVLADPPHACEELRNEIFAPDSVALMERGECSFLVKTLNGEKAGATAIIITDSQNYEYSFHQYVEMIPDESQDRAN 143 (193)
T ss_pred cCcceeecCChhHHHHHhhcccCCCcEEEEecCCceeeehhhhhhhcCceEEEEecCCCCchhHHHHHHhcCcccccccC
Confidence 35566664 56765443333788999999 9999999999999999999999877655 21 2222 34
Q ss_pred ccEEEeecccHHHHHHHHHhCCCCeEEEEeee
Q 004824 405 FPAAFINVNDGQTIIDYIKKCDNPTGSLQFRK 436 (728)
Q Consensus 405 ~p~~~i~~~~g~~l~~~~~~~~~~~~~i~~~~ 436 (728)
+|++++-..+|..++.-++.-..+-+.|..+-
T Consensus 144 iPa~fllg~~Gy~ir~sL~r~~r~ha~i~IPV 175 (193)
T KOG3920|consen 144 IPAVFLLGVTGYYIRVSLKRYFRDHAKIDIPV 175 (193)
T ss_pred CceEEEeccceEEEehhHHHhCCccEEEeccc
Confidence 59999999999887777766666666665543
No 77
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=91.94 E-value=1.4 Score=39.78 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=40.0
Q ss_pred eEEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccC
Q 004824 637 VKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLL 694 (728)
Q Consensus 637 ~~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 694 (728)
.=.++..|+|....+.+|++++..++|+++......+++. +|++..+.|.+..+...
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~-~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVP-PGETREVPVFVTAPPDA 88 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEEC-CCCEEEEEEEEEECHHH
Confidence 3447778999999999999999998899996555778887 89999999999987544
No 78
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.73 E-value=0.69 Score=49.47 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=56.9
Q ss_pred cCCCCCccCc---c-CcceEEEEc-cCCchhHHHHHHHHcCceEEEEecCCCccccc----cccCc--cEEEeecccHHH
Q 004824 349 DACDSVTELK---K-VINSIVVCR-EDSSISSQIDNAVAAGVLGAVFISNSALLEVY----IRSSF--PAAFINVNDGQT 417 (728)
Q Consensus 349 ~~c~~~~~~~---~-~~gkiv~~~-g~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~----~~~~~--p~~~i~~~~g~~ 417 (728)
..|.+....+ + -...++++. |+|+|.+|+.+|+.+|..++|++|+....... ....+ +.++++...|+.
T Consensus 63 ~aC~~i~~~p~~~~~~~~~laLI~Rg~CsFe~Kv~~AQ~aGfkaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ge~ 142 (348)
T KOG4628|consen 63 NACNPITNFPEHSTRSTSFLALIRRGGCSFEDKVLNAQRAGFKAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFSGEL 142 (348)
T ss_pred cccCccccCccCCCCCcceEEEEEccCCchHHHHhhcccccCceEEEecCCCCchheeeccCCccceeEEEEEeeehHHH
Confidence 4676654422 2 677888998 99999999999999999999999977662111 12233 899999999999
Q ss_pred HHHHHH
Q 004824 418 IIDYIK 423 (728)
Q Consensus 418 l~~~~~ 423 (728)
|.+|..
T Consensus 143 l~~~~~ 148 (348)
T KOG4628|consen 143 LSSYAG 148 (348)
T ss_pred HHHhhc
Confidence 988743
No 79
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=89.96 E-value=2.4 Score=38.72 Aligned_cols=70 Identities=19% Similarity=0.309 Sum_probs=52.5
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEec----CCC--------------eE------EEEEeceEEEeccCeeEEEEEEEEec
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTG----IDG--------------LK------VYVEPRRLVFKQKYEKQSYKLTLEGP 691 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~----~~g--------------~~------v~v~p~~~~~~~~g~~~~~~vt~~~~ 691 (728)
.+++++.+|+|.++++.+|.+.+.. ..| +. |++ |..++++ ++++++++++++.|
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~-~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLP-PNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEEC-CCCEEEEEEEEEcC
Confidence 6788999999999999999988651 111 11 122 4457787 89999999999998
Q ss_pred ccCCCceEEEEEEEEe
Q 004824 692 KLLEKDVVYGSISWVD 707 (728)
Q Consensus 692 ~~~~~~~~~G~i~~~~ 707 (728)
...-.+.+-|-|.+..
T Consensus 105 ~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 105 KKAFDGIILGGIYFSE 120 (121)
T ss_pred CCCcCCEEEeeEEEEe
Confidence 7665678888888764
No 80
>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2. A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt
Probab=89.13 E-value=0.77 Score=43.85 Aligned_cols=56 Identities=18% Similarity=0.190 Sum_probs=39.8
Q ss_pred CeeeEEEccCCCCC------ccCcc-CcceEEEEc-cCCc-------------------hhHHHHHHHHcCceEEEEecC
Q 004824 341 SQVSLAFMDACDSV------TELKK-VINSIVVCR-EDSS-------------------ISSQIDNAVAAGVLGAVFISN 393 (728)
Q Consensus 341 ~~~~lv~~~~c~~~------~~~~~-~~gkiv~~~-g~~~-------------------~~~~~~~~~~~Ga~g~i~~n~ 393 (728)
...++||.+++... ++..- ++||||++. +... ...|...+.+.||.|+|++.+
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA~gvi~v~~ 101 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVNDPGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGAAGALIVHE 101 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCCCCcccccccccCcccccccccHHHHHHHHHHCCCeEEEEEeC
Confidence 46678887666432 22233 999999998 4332 224999999999999999987
Q ss_pred CCc
Q 004824 394 SAL 396 (728)
Q Consensus 394 ~~~ 396 (728)
...
T Consensus 102 ~~~ 104 (157)
T cd04821 102 TEP 104 (157)
T ss_pred CCc
Confidence 543
No 81
>COG1470 Predicted membrane protein [Function unknown]
Probab=85.98 E-value=4 Score=45.00 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=59.0
Q ss_pred eeEEEEEEEEeCCCCCeE-EEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEe
Q 004824 636 VVKEFWRTVTNAEEVGTA-YTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVD 707 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~t-y~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 707 (728)
...++...+.|.|+.+.| -++++..|.|-++.|+|.++---++|+.+++++|+++|.....+-++=+|+-++
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 467788899999987655 678899999999999998776667999999999999987776666666666655
No 82
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=82.54 E-value=16 Score=32.98 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=45.2
Q ss_pred EEEEEEEEeCCCCCeEEEEEEec---CCC----eEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEE
Q 004824 638 KEFWRTVTNAEEVGTAYTAKLTG---IDG----LKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWV 706 (728)
Q Consensus 638 ~t~~rtvtn~g~~~~ty~~~~~~---~~g----~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 706 (728)
.+.+.+|+|.++.+..+.+.+.. ... -.+-++|..+.+. +|+++.+.| +.....+.+....=+|.++
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L~-pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRLE-PGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEEE-TTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEeC-CCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 34566899999988788887764 111 2577899999998 899999999 7643323333333445554
No 83
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=79.29 E-value=1.3 Score=52.32 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=34.0
Q ss_pred eceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEe---CCCCcEEEeEEEEEee
Q 004824 670 PRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVD---DDGRYEVRSPIVATNL 723 (728)
Q Consensus 670 p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~---~~~~~~v~~P~~~~~~ 723 (728)
|..+-+. ++.+.+.|+|++. ....+..++.|.=-| ...++..|+|+-|..+
T Consensus 636 p~~l~l~--~~~R~i~VrVDpt-~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~P 689 (1304)
T KOG1114|consen 636 PEYLMLA--NQGRGINVRVDPT-GLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIKP 689 (1304)
T ss_pred chhheec--cCCceeEEEECCc-CCCCCcceEEEEEeecCCcccCceEEeeeEEEcc
Confidence 5545444 7788999999984 455555566555333 2467999999987643
No 84
>COG1470 Predicted membrane protein [Function unknown]
Probab=72.11 E-value=54 Score=36.56 Aligned_cols=71 Identities=13% Similarity=0.090 Sum_probs=51.5
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEe-cCCCeEEEEEe-----ceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEe
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLT-GIDGLKVYVEP-----RRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVD 707 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~-~~~g~~v~v~p-----~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 707 (728)
.+..|+.++.|.|..+.+|..++. .|+|-.....- +++.+. +||+++|+|.+.++.....+.|.=.|+-.+
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL~-~gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKLK-PGEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEec-CCCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 467888899999999999999998 78887665442 345555 899999999999875443333333344443
No 85
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=69.25 E-value=24 Score=30.91 Aligned_cols=52 Identities=19% Similarity=0.179 Sum_probs=38.6
Q ss_pred eEEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEec
Q 004824 637 VKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGP 691 (728)
Q Consensus 637 ~~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~ 691 (728)
..+...+|+|.++....|++....|.... |.|..-.+. +|+++++.|++...
T Consensus 19 ~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i~-p~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 19 QQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGIIE-PGESVEITITFQPF 70 (109)
T ss_dssp -EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SS
T ss_pred eEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEEC-CCCEEEEEEEEEec
Confidence 34555699999999888999988887665 469887776 89999999999874
No 86
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=65.04 E-value=24 Score=39.63 Aligned_cols=56 Identities=21% Similarity=0.249 Sum_probs=47.1
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecc
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPK 692 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 692 (728)
..-.++..+.|....+.+|+++++..++.++...+..+++. +|++.++.|++..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v~-~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHVK-AGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEEC-CCCEEEEEEEEEech
Confidence 34557778999999999999999999998888764578887 899999999998863
No 87
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=63.88 E-value=58 Score=30.42 Aligned_cols=69 Identities=17% Similarity=0.195 Sum_probs=49.2
Q ss_pred eEEEEEEEEeCCCCC-eEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEe
Q 004824 637 VKEFWRTVTNAEEVG-TAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVD 707 (728)
Q Consensus 637 ~~t~~rtvtn~g~~~-~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 707 (728)
...+...|-|..... .--++.......+++--.|..+++. +++.++++.+|+. .....+++||.|++..
T Consensus 70 DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL~-P~~~~~i~~~iKV-sStetGvIfG~I~Yd~ 139 (140)
T PF07718_consen 70 DIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITLA-PHGFARIKATIKV-SSTETGVIFGNIVYDG 139 (140)
T ss_pred eEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceeeC-CCcEEEEEEEEEE-EeccCCEEEEEEEEec
Confidence 344444566664332 2234555556778888889999998 8999999998887 4466789999999864
No 88
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=48.78 E-value=59 Score=27.00 Aligned_cols=39 Identities=23% Similarity=0.323 Sum_probs=30.1
Q ss_pred EEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEeC
Q 004824 665 KVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDD 708 (728)
Q Consensus 665 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~ 708 (728)
.+++.|..+++. .|+++.|+++++... . .. ...+.|+++
T Consensus 4 ~i~i~p~~~~l~-~G~~~~l~a~~~~~~-~--~~-~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASVK-KGLTLQLTATVTPSS-A--KV-TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEEe-CCCeEEEEEEEECCC-C--Cc-cceEEEEEC
Confidence 577889999998 799999999987532 1 12 677899885
No 89
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=46.15 E-value=1.3e+02 Score=26.81 Aligned_cols=68 Identities=19% Similarity=0.158 Sum_probs=45.4
Q ss_pred cccc-CCCeEEEEEeeeCCCCChHHHHHHHHHHHHCCCcEEEeccccCCC-----CCCChhhHHHHHHHHHHhCCcEEEE
Q 004824 212 RGIA-PRACVAMYKAIWRHGVYSSDVVAAIDQALQDGVDVLSLSLGLSLN-----GIFLEDDAIAVATFAAMEKGVLVVA 285 (728)
Q Consensus 212 ~GvA-P~A~i~~~kv~~~~g~~~~~i~~ai~~a~~~g~dVIN~SlG~~~~-----~~~~~~~~~~~~~~~a~~~Gi~vV~ 285 (728)
.... ++++|+.+ +...||....++.-++++.+.|+++|-+|-... . .-++ .+.+...+..+. |+-||.
T Consensus 31 ~~y~~~~~elvgf--~~CgGCpg~~~~~~~~~l~~~~~d~IHlssC~~-~~~~~~~CP~-~~~~~~~I~~~~--gi~VV~ 104 (107)
T PF08821_consen 31 ARYDDEDVELVGF--FTCGGCPGRKLVRRIKKLKKNGADVIHLSSCMV-KGNPHGPCPH-IDEIKKIIEEKF--GIEVVE 104 (107)
T ss_pred ccCCCCCeEEEEE--eeCCCCChhHHHHHHHHHHHCCCCEEEEcCCEe-cCCCCCCCCC-HHHHHHHHHHHh--CCCEee
Confidence 3444 46777774 455678899999999999999999999998763 2 1133 344443333322 887775
No 90
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=44.91 E-value=1.8e+02 Score=24.45 Aligned_cols=52 Identities=21% Similarity=0.146 Sum_probs=31.5
Q ss_pred eeEEEEEEEEeCCCCC-eEEEEEEecCCCeEEEEEeceE-EEeccCeeEEEEEEEEec
Q 004824 636 VVKEFWRTVTNAEEVG-TAYTAKLTGIDGLKVYVEPRRL-VFKQKYEKQSYKLTLEGP 691 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~-~ty~~~~~~~~g~~v~v~p~~~-~~~~~g~~~~~~vt~~~~ 691 (728)
...+++.+|+|.|... ..+.+.+.. .|..+. -..+ .+. +|+++++++++..+
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~-~~~~~~--~~~i~~L~-~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYL-DGNSVS--TVTIPSLA-PGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEE-TTEEEE--EEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEE-CCceec--cEEECCcC-CCcEEEEEEEEEeC
Confidence 5788888999999764 446666543 333331 1122 455 79999998888875
No 91
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=38.88 E-value=1.6e+02 Score=24.74 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=24.7
Q ss_pred EEEEEEEeCCCCCe--------EEEEEEecCCCeEE---------EEEeceEEEeccCeeEEEEEEEEec
Q 004824 639 EFWRTVTNAEEVGT--------AYTAKLTGIDGLKV---------YVEPRRLVFKQKYEKQSYKLTLEGP 691 (728)
Q Consensus 639 t~~rtvtn~g~~~~--------ty~~~~~~~~g~~v---------~v~p~~~~~~~~g~~~~~~vt~~~~ 691 (728)
.++.+|+|.++.+. .|.+.+....|-.| +---...++. +||+++|+.++...
T Consensus 3 ~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~-pGe~~~~~~~~~~~ 71 (82)
T PF12690_consen 3 EFTLTVTNNSDEPVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLE-PGESLTYEETWDLK 71 (82)
T ss_dssp EEEEEEEE-SSS-EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE--TT-EEEEEEEESS-
T ss_pred EEEEEEEeCCCCeEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEEC-CCCEEEEEEEECCC
Confidence 45567777776543 34444544444333 2223345565 89999999888763
No 92
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=34.41 E-value=1.4e+02 Score=21.73 Aligned_cols=43 Identities=16% Similarity=0.031 Sum_probs=23.9
Q ss_pred EEEEeCCCCCeEEEEEEecCCC-eEEEEEeceEEEeccCeeEEEEEEE
Q 004824 642 RTVTNAEEVGTAYTAKLTGIDG-LKVYVEPRRLVFKQKYEKQSYKLTL 688 (728)
Q Consensus 642 rtvtn~g~~~~ty~~~~~~~~g-~~v~v~p~~~~~~~~g~~~~~~vt~ 688 (728)
.+++|.|+.+..-+ .+...=| ..+. .+.-.+. +||+..++|++
T Consensus 2 F~~~N~g~~~L~I~-~v~tsCgCt~~~--~~~~~i~-PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVIT-DVQTSCGCTTAE--YSKKPIA-PGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEE-EeeEccCCEEee--CCcceEC-CCCEEEEEEEC
Confidence 36899998754422 1222222 3333 3333344 89998888874
No 93
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=34.08 E-value=38 Score=24.34 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=18.9
Q ss_pred HHHHhhhCCCCCHHHHHHHHHhcc
Q 004824 513 AGLLKAAHPDWSPAAIRSALVTTA 536 (728)
Q Consensus 513 aALl~~~~p~lsp~~ik~~L~~TA 536 (728)
+--|++.+|+|++..|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 345788999999999999997553
No 94
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=32.28 E-value=1.6e+02 Score=32.06 Aligned_cols=51 Identities=20% Similarity=0.157 Sum_probs=27.2
Q ss_pred eeEEEEEEEEeCCCCCeEE----EEEEe--c----------------CCCeEEEEEeceEEEeccCeeEEEEEEEEe
Q 004824 636 VVKEFWRTVTNAEEVGTAY----TAKLT--G----------------IDGLKVYVEPRRLVFKQKYEKQSYKLTLEG 690 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty----~~~~~--~----------------~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~ 690 (728)
.+.+++.+|||.|+++..- ++.+. . ..|++ |+|+.- + .+||+++++|+.+-
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~--vs~~~p-I-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLS--VSDNSP-I-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EE--ES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcce--eCCCCC-c-CCCceEEEEEEeeh
Confidence 5788999999999875331 11121 1 12333 445432 2 37999999998863
No 95
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=27.46 E-value=1.5e+02 Score=36.12 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=32.6
Q ss_pred eeEEEEEEEEeCCCCCeEEEEE--EecCCCeEEEEEe-------ceEEEeccCeeEEEEEEEEec
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAK--LTGIDGLKVYVEP-------RRLVFKQKYEKQSYKLTLEGP 691 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~--~~~~~g~~v~v~p-------~~~~~~~~g~~~~~~vt~~~~ 691 (728)
++.+++.+|||+|+.+..-.+- +..|.+ ++. .| .++.+. +||++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~-~~~-~P~k~L~gF~Kv~L~-pGes~~V~~~l~~~ 728 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTA-SMS-RPVKELKGFEKIMLK-PGETQTVSFPIDIE 728 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCC-CCC-CHHHhccCceeEeEC-CCCeEEEEEeecHH
Confidence 5688999999999764332222 333432 111 12 123444 89999999998863
No 96
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=26.73 E-value=30 Score=15.88 Aligned_cols=6 Identities=33% Similarity=0.795 Sum_probs=4.2
Q ss_pred cccCCC
Q 004824 449 SYSSRG 454 (728)
Q Consensus 449 ~fSS~G 454 (728)
.|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 577776
No 97
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.73 E-value=5.5e+02 Score=25.10 Aligned_cols=68 Identities=16% Similarity=0.117 Sum_probs=42.2
Q ss_pred eeEEEEEEEEeCCCCCeEEEEEEec----CCCeEEEEEec--eE-EEeccCeeEEEEEEEEecccCCCceEEE--EEEEE
Q 004824 636 VVKEFWRTVTNAEEVGTAYTAKLTG----IDGLKVYVEPR--RL-VFKQKYEKQSYKLTLEGPKLLEKDVVYG--SISWV 706 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~~ty~~~~~~----~~g~~v~v~p~--~~-~~~~~g~~~~~~vt~~~~~~~~~~~~~G--~i~~~ 706 (728)
...+++.+|.|+|+. .-|.|++.. ++.+++.---. ++ ++ .+|+..+.++++++.. .+.+.++ .++.+
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i-~pg~~vsh~~vv~p~~--~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERI-PPGENVSHSYVVRPKK--SGYFNFTPAVVTYR 113 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEE-CCCCeEEEEEEEeeee--eEEEEccCEEEEEE
Confidence 578899999999986 568888875 23444311001 11 23 4799999999998732 3445554 34444
Q ss_pred e
Q 004824 707 D 707 (728)
Q Consensus 707 ~ 707 (728)
+
T Consensus 114 ~ 114 (181)
T PF05753_consen 114 D 114 (181)
T ss_pred C
Confidence 4
No 98
>PRK15019 CsdA-binding activator; Provisional
Probab=26.64 E-value=59 Score=30.72 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=28.7
Q ss_pred ceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHH
Q 004824 496 FNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRS 530 (728)
Q Consensus 496 y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~ 530 (728)
-..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 76 ~~~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 76 KMHFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 44555666 67999999999999999999999876
No 99
>PLN03080 Probable beta-xylosidase; Provisional
Probab=26.59 E-value=1.3e+02 Score=36.73 Aligned_cols=53 Identities=11% Similarity=-0.013 Sum_probs=31.6
Q ss_pred eEEEEEEEEeCCCCCeEEEEE--EecCCC-eEE----EEEeceEEEeccCeeEEEEEEEEe
Q 004824 637 VKEFWRTVTNAEEVGTAYTAK--LTGIDG-LKV----YVEPRRLVFKQKYEKQSYKLTLEG 690 (728)
Q Consensus 637 ~~t~~rtvtn~g~~~~ty~~~--~~~~~g-~~v----~v~p~~~~~~~~g~~~~~~vt~~~ 690 (728)
..+++.+|||+|+.+....|- +..|.. +.. -+--.++.+. +||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L~-~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHTA-SGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEeeC-CCCEEEEEEEeCc
Confidence 578888999999865444433 333421 110 0111233444 8999999988875
No 100
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=26.18 E-value=4.3e+02 Score=22.90 Aligned_cols=55 Identities=18% Similarity=0.105 Sum_probs=34.5
Q ss_pred eeEEEEEEEEeCCCCC-eEEEEEE----ecCCCeE---EEEEeceEEEeccCeeEEEEEEEEec
Q 004824 636 VVKEFWRTVTNAEEVG-TAYTAKL----TGIDGLK---VYVEPRRLVFKQKYEKQSYKLTLEGP 691 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~-~ty~~~~----~~~~g~~---v~v~p~~~~~~~~g~~~~~~vt~~~~ 691 (728)
...++..+++|..+.. .+-++.. ..-.|+. ....-...++. ++++.+++++|.+.
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~-p~~~~~~~~~i~p~ 77 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLK-PGETKSVEVTITPS 77 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HH
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeC-CCCEEEEEEEEEce
Confidence 5788888999998776 4422222 1234653 45556666777 89999999999874
No 101
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=25.35 E-value=65 Score=30.09 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=29.3
Q ss_pred ceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHH
Q 004824 496 FNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSA 531 (728)
Q Consensus 496 y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~ 531 (728)
-..+.|.| =|++|-|++|||.+.+-..+|++|.+.
T Consensus 71 ~~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 71 TLHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 44566776 589999999999999999999998743
No 102
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=25.16 E-value=1.4e+02 Score=23.50 Aligned_cols=42 Identities=21% Similarity=0.328 Sum_probs=24.1
Q ss_pred eEEEeccCeeEEEEEEEEecccCC--CceEEEEEEEEeCCCCcE
Q 004824 672 RLVFKQKYEKQSYKLTLEGPKLLE--KDVVYGSISWVDDDGRYE 713 (728)
Q Consensus 672 ~~~~~~~g~~~~~~vt~~~~~~~~--~~~~~G~i~~~~~~~~~~ 713 (728)
+++|.=.|++-+-++||++.+... +...--.|.|++..|.|.
T Consensus 15 Sitf~W~g~~t~atLtFePg~Glg~~n~~pVatl~W~DsaG~H~ 58 (68)
T PF09244_consen 15 SITFTWTGATTSATLTFEPGRGLGVDNTTPVATLAWTDSAGDHR 58 (68)
T ss_dssp EEEEEEE-SS-EEEEEE-GGGC-STT--S--EEEEEEETTEEEE
T ss_pred EEEEEEeccccEEEEEEccCcccCccCCcceeEEEEeccCCCcc
Confidence 355554567777889999876543 233557899999767775
No 103
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.71 E-value=63 Score=22.12 Aligned_cols=13 Identities=38% Similarity=0.718 Sum_probs=10.7
Q ss_pred chhHHHHHHHHHH
Q 004824 504 MATPHVAGVAGLL 516 (728)
Q Consensus 504 mAaP~VAG~aALl 516 (728)
.|+|.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 104
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=22.49 E-value=57 Score=26.86 Aligned_cols=38 Identities=13% Similarity=0.296 Sum_probs=27.9
Q ss_pred EEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEeC
Q 004824 665 KVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDD 708 (728)
Q Consensus 665 ~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~ 708 (728)
+|++.|..+++. .|++..|++++....... ..+.|..+
T Consensus 4 ~I~i~~~~~~l~-~G~~~~l~~~~~~~~~~~-----~~v~w~ss 41 (79)
T PF02368_consen 4 SITITPTSVTLK-VGQTQQLTATVTPSDGSN-----SKVTWSSS 41 (79)
T ss_dssp SEEETTTEEECE-TTCEETTEEEEEEEESTT-----SCEEEEES
T ss_pred EEEEECCEEEEE-CCCEEEEEEEEEECCCcE-----eEEEEEeC
Confidence 466788888888 799998888888744332 55778775
No 105
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=22.34 E-value=80 Score=29.49 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=28.7
Q ss_pred ceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHH
Q 004824 496 FNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRS 530 (728)
Q Consensus 496 y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~ 530 (728)
--.+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 66 ~~~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 66 IIELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 34555666 68999999999999999999999865
No 106
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=21.41 E-value=4.2e+02 Score=22.29 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=35.3
Q ss_pred EEEEEEEEeCCCCCeEEEEEEecCCCeEEEEEeceEEEeccCeeEEEEEEEEecccCCCceEEEEEEEEeC
Q 004824 638 KEFWRTVTNAEEVGTAYTAKLTGIDGLKVYVEPRRLVFKQKYEKQSYKLTLEGPKLLEKDVVYGSISWVDD 708 (728)
Q Consensus 638 ~t~~rtvtn~g~~~~ty~~~~~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~ 708 (728)
..+..+++|.|....++++.-..-.+ -.|.++++. +|+++++.+.+.. ..+||. |+++.+
T Consensus 20 g~l~l~l~N~g~~~~~~~v~~~~y~~----~~~~~~~v~-ag~~~~~~w~l~~----s~gwYD--l~v~~~ 79 (89)
T PF05506_consen 20 GNLRLTLSNPGSAAVTFTVYDNAYGG----GGPWTYTVA-AGQTVSLTWPLAA----SGGWYD--LTVTGP 79 (89)
T ss_pred CEEEEEEEeCCCCcEEEEEEeCCcCC----CCCEEEEEC-CCCEEEEEEeecC----CCCcEE--EEEEcC
Confidence 36677899999887777766522110 124556676 6888776665532 235554 444443
No 107
>PRK13203 ureB urease subunit beta; Reviewed
Probab=21.21 E-value=1.4e+02 Score=26.22 Aligned_cols=16 Identities=19% Similarity=-0.010 Sum_probs=11.8
Q ss_pred eeEEEEEEEEeCCCCC
Q 004824 636 VVKEFWRTVTNAEEVG 651 (728)
Q Consensus 636 ~~~t~~rtvtn~g~~~ 651 (728)
+..+++.+|+|+|+.+
T Consensus 18 gr~~~~l~V~NtGDRP 33 (102)
T PRK13203 18 GRETVTLTVANTGDRP 33 (102)
T ss_pred CCCEEEEEEEeCCCCc
Confidence 3455677899999875
No 108
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.96 E-value=1.3e+02 Score=21.63 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHhc
Q 004824 512 VAGLLKAAHPDWSPAAIRSALVTT 535 (728)
Q Consensus 512 ~aALl~~~~p~lsp~~ik~~L~~T 535 (728)
.+..|++.+|+++...|+..|...
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~ 28 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEAN 28 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHc
Confidence 456788999999999999999854
No 109
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=20.78 E-value=77 Score=24.44 Aligned_cols=39 Identities=18% Similarity=0.301 Sum_probs=23.7
Q ss_pred CceeeccccchhHHHHHHHH------HHhhhCCCCCHHHHHHHHH
Q 004824 495 NFNLMSGTSMATPHVAGVAG------LLKAAHPDWSPAAIRSALV 533 (728)
Q Consensus 495 ~y~~~sGTSmAaP~VAG~aA------Ll~~~~p~lsp~~ik~~L~ 533 (728)
+--.+.||=+..=.|....+ -+.+.+|++++++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 34456677776655555532 3456799999999999984
No 110
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=20.47 E-value=97 Score=28.36 Aligned_cols=35 Identities=20% Similarity=0.118 Sum_probs=27.7
Q ss_pred ceeeccccchhHHHHHHHHHHhhhCCCCCHHHHHHH
Q 004824 496 FNLMSGTSMATPHVAGVAGLLKAAHPDWSPAAIRSA 531 (728)
Q Consensus 496 y~~~sGTSmAaP~VAG~aALl~~~~p~lsp~~ik~~ 531 (728)
-..+.|.|= |++|-|++|||.+.+-..+|++|.+.
T Consensus 57 ~~~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 57 KVHFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 335666665 67999999999999999999998654
No 111
>PRK13202 ureB urease subunit beta; Reviewed
Probab=20.16 E-value=1.7e+02 Score=25.72 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=11.0
Q ss_pred EEEEEEEEeCCCCC
Q 004824 638 KEFWRTVTNAEEVG 651 (728)
Q Consensus 638 ~t~~rtvtn~g~~~ 651 (728)
.+++.+|+|.|+.+
T Consensus 21 ~~~~l~V~NtGDRP 34 (104)
T PRK13202 21 SRLQMRIINAGDRP 34 (104)
T ss_pred ceEEEEEEeCCCCc
Confidence 56677899999875
Done!