Query 004825
Match_columns 728
No_of_seqs 359 out of 3315
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 06:59:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004825.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004825hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vsq_A Surfactin synthetase su 100.0 1.1E-92 3.8E-97 877.0 28.4 638 17-720 301-959 (1304)
2 1pg4_A Acetyl-COA synthetase; 100.0 2.2E-87 7.6E-92 773.9 55.5 580 118-721 23-621 (652)
3 1ry2_A Acetyl-coenzyme A synth 100.0 5E-87 1.7E-91 771.2 56.2 592 112-721 19-637 (663)
4 3etc_A AMP-binding protein; ad 100.0 2.9E-82 1E-86 721.3 48.5 523 168-721 47-579 (580)
5 4dg8_A PA1221; ANL superfamily 100.0 3.3E-82 1.1E-86 724.7 41.1 479 178-721 28-513 (620)
6 3g7s_A Long-chain-fatty-acid-- 100.0 4.8E-81 1.6E-85 708.7 44.4 516 178-726 20-547 (549)
7 3ni2_A 4-coumarate:COA ligase; 100.0 4E-80 1.4E-84 699.0 50.9 503 178-721 23-535 (536)
8 4fuq_A Malonyl COA synthetase; 100.0 1.4E-79 4.9E-84 688.7 48.2 496 181-722 4-501 (503)
9 3fce_A D-alanine--poly(phospho 100.0 6.6E-80 2.3E-84 693.9 44.5 498 180-724 4-507 (512)
10 3e7w_A D-alanine--poly(phospho 100.0 2.7E-79 9.4E-84 688.4 48.5 495 180-723 4-505 (511)
11 3rg2_A Enterobactin synthase c 100.0 4.5E-79 1.5E-83 701.5 50.9 498 179-721 29-534 (617)
12 1amu_A GRSA, gramicidin synthe 100.0 2.9E-79 9.9E-84 694.6 45.2 482 178-719 40-527 (563)
13 1mdb_A 2,3-dihydroxybenzoate-A 100.0 3.7E-79 1.3E-83 691.3 44.2 500 178-721 26-531 (539)
14 3c5e_A Acyl-coenzyme A synthet 100.0 5.3E-78 1.8E-82 685.3 52.2 521 167-724 28-565 (570)
15 3r44_A Fatty acyl COA syntheta 100.0 6.2E-79 2.1E-83 685.9 44.1 495 177-722 16-514 (517)
16 3l8c_A D-alanine--poly(phospho 100.0 1.1E-78 3.6E-83 685.8 44.6 499 179-723 6-514 (521)
17 4gr5_A Non-ribosomal peptide s 100.0 7.6E-80 2.6E-84 701.7 34.9 487 178-718 76-568 (570)
18 1t5h_X 4-chlorobenzoyl COA lig 100.0 6.3E-78 2.2E-82 676.2 47.4 487 179-720 4-503 (504)
19 3o83_A Peptide arylation enzym 100.0 4.6E-79 1.6E-83 691.3 34.2 504 179-723 32-542 (544)
20 2d1s_A Luciferase, luciferin 4 100.0 6E-77 2.1E-81 674.2 48.9 501 179-721 27-543 (548)
21 3tsy_A Fusion protein 4-coumar 100.0 2E-78 6.9E-83 731.8 36.1 562 112-721 11-582 (979)
22 3ivr_A Putative long-chain-fat 100.0 4.3E-78 1.5E-82 678.6 34.8 497 178-727 7-507 (509)
23 1v25_A Long-chain-fatty-acid-C 100.0 5.8E-78 2E-82 681.8 35.5 502 179-722 20-537 (541)
24 2v7b_A Benzoate-coenzyme A lig 100.0 1.5E-76 5E-81 669.4 46.5 502 174-717 21-528 (529)
25 3rix_A Luciferase, luciferin 4 100.0 5.6E-78 1.9E-82 683.7 33.7 509 178-723 21-543 (550)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 4.4E-76 1.5E-80 660.3 37.8 474 177-717 22-504 (505)
27 3ipl_A 2-succinylbenzoate--COA 100.0 1.2E-74 4E-79 649.6 44.8 494 180-722 4-498 (501)
28 3ite_A SIDN siderophore synthe 100.0 8E-75 2.7E-79 660.1 34.5 504 179-724 22-546 (562)
29 3kxw_A Saframycin MX1 syntheta 100.0 7.5E-74 2.6E-78 656.7 36.4 506 179-721 13-567 (590)
30 3gqw_A Fatty acid AMP ligase; 100.0 1.2E-70 4E-75 628.6 40.7 493 177-722 21-564 (576)
31 3t5a_A Long-chain-fatty-acid-- 100.0 3.3E-58 1.1E-62 513.6 28.1 399 178-610 25-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 6.2E-56 2.1E-60 473.5 25.3 319 355-724 36-357 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.8E-49 1.3E-53 434.2 26.0 326 352-714 81-430 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 4E-48 1.4E-52 427.0 26.6 331 352-715 88-438 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 5.9E-48 2E-52 424.9 25.4 330 352-714 86-432 (437)
36 3hgu_A EHPF; phenazine, antibi 100.0 7.5E-32 2.6E-36 289.5 17.3 238 352-620 87-368 (369)
37 3lax_A Phenylacetate-coenzyme 99.6 2.5E-15 8.7E-20 129.9 7.5 96 609-712 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.5 1.5E-14 5.2E-19 124.8 9.3 97 609-713 1-102 (109)
39 4epl_A Jasmonic acid-amido syn 98.8 1.5E-07 5.2E-12 103.3 18.0 162 470-664 301-489 (581)
40 4b2g_A GH3-1 auxin conjugating 98.7 1.7E-07 5.8E-12 103.3 17.8 56 590-645 411-477 (609)
41 4eql_A 4-substituted benzoates 98.7 8.3E-08 2.8E-12 105.7 12.7 134 470-635 296-448 (581)
42 2jgp_A Tyrocidine synthetase 3 98.2 2.8E-08 9.6E-13 111.0 -6.9 118 17-141 374-506 (520)
43 4hvm_A Tlmii; PSI-biology, mid 97.6 1.2E-06 4.3E-11 96.8 -6.3 131 17-160 299-472 (493)
44 1l5a_A Amide synthase, VIBH; n 97.1 6E-06 2E-10 89.7 -8.7 116 17-142 278-405 (436)
45 2xhg_A Tyrocidine synthetase A 95.5 0.00034 1.2E-08 76.4 -6.9 119 17-141 309-453 (466)
46 2y27_A Phenylacetate-coenzyme 90.7 1.7 5.8E-05 46.3 12.5 101 189-291 87-191 (437)
47 2y4o_A Phenylacetate-coenzyme 89.2 2.7 9.1E-05 44.8 12.5 100 190-291 90-193 (443)
48 3qov_A Phenylacetate-coenzyme 88.8 2.3 7.9E-05 45.2 11.6 98 192-291 86-187 (436)
49 1q9j_A PAPA5, polyketide synth 74.1 0.09 3.1E-06 56.0 -6.8 100 27-141 297-413 (422)
50 3hgu_A EHPF; phenazine, antibi 73.4 13 0.00045 38.1 10.0 100 190-292 89-215 (369)
51 3rix_A Luciferase, luciferin 4 71.9 11 0.00036 41.4 9.3 100 355-459 34-136 (550)
52 1mdb_A 2,3-dihydroxybenzoate-A 66.6 58 0.002 35.2 13.8 98 189-291 179-281 (539)
53 3ipl_A 2-succinylbenzoate--COA 65.9 55 0.0019 35.0 13.4 98 189-291 160-260 (501)
54 3o83_A Peptide arylation enzym 65.8 50 0.0017 35.8 13.1 98 189-291 188-290 (544)
55 2d1s_A Luciferase, luciferin 4 64.7 28 0.00096 37.9 10.8 98 192-292 192-293 (548)
56 3ivr_A Putative long-chain-fat 64.0 22 0.00075 38.3 9.7 95 354-458 19-116 (509)
57 3ni2_A 4-coumarate:COA ligase; 62.7 26 0.0009 38.0 10.0 97 354-458 35-134 (536)
58 1t5h_X 4-chlorobenzoyl COA lig 61.6 42 0.0014 36.0 11.4 98 354-459 15-117 (504)
59 3t5a_A Long-chain-fatty-acid-- 58.9 56 0.0019 34.6 11.7 105 354-462 37-149 (480)
60 3g7s_A Long-chain-fatty-acid-- 56.8 35 0.0012 37.1 9.8 103 354-459 32-138 (549)
61 3etc_A AMP-binding protein; ad 56.3 46 0.0016 36.5 10.6 95 354-453 69-166 (580)
62 2v7b_A Benzoate-coenzyme A lig 55.8 37 0.0013 36.6 9.7 95 354-458 36-133 (529)
63 1v25_A Long-chain-fatty-acid-C 55.6 34 0.0012 37.2 9.4 100 354-459 31-133 (541)
64 3kxw_A Saframycin MX1 syntheta 54.2 50 0.0017 36.2 10.5 99 188-290 163-268 (590)
65 3fce_A D-alanine--poly(phospho 53.7 44 0.0015 35.9 9.8 99 189-291 141-244 (512)
66 3e7w_A D-alanine--poly(phospho 52.7 74 0.0025 34.1 11.4 99 189-291 140-243 (511)
67 3rg2_A Enterobactin synthase c 51.9 1.1E+02 0.0036 33.8 12.8 98 189-291 181-283 (617)
68 3r44_A Fatty acyl COA syntheta 50.6 50 0.0017 35.5 9.6 96 354-457 29-127 (517)
69 3c5e_A Acyl-coenzyme A synthet 49.7 47 0.0016 36.4 9.3 101 354-459 56-160 (570)
70 1amu_A GRSA, gramicidin synthe 46.6 62 0.0021 35.3 9.6 96 354-459 52-150 (563)
71 4fuq_A Malonyl COA synthetase; 45.9 59 0.002 34.8 9.3 94 355-455 14-110 (503)
72 1ry2_A Acetyl-coenzyme A synth 45.1 52 0.0018 36.8 8.9 97 354-454 95-195 (663)
73 3nyq_A Malonyl-COA ligase; A/B 42.5 1.7E+02 0.0059 31.1 12.3 97 189-291 152-252 (505)
74 1pg4_A Acetyl-COA synthetase; 40.9 64 0.0022 36.0 8.7 96 354-453 89-187 (652)
75 4gr5_A Non-ribosomal peptide s 40.7 78 0.0027 34.5 9.3 92 354-455 88-182 (570)
76 3tsy_A Fusion protein 4-coumar 39.3 82 0.0028 37.1 9.7 95 354-456 74-171 (979)
77 3tbh_A O-acetyl serine sulfhyd 37.5 1.2E+02 0.004 30.6 9.3 66 226-291 61-127 (334)
78 4h1h_A LMO1638 protein; MCCF-l 34.6 1E+02 0.0036 30.8 8.3 72 231-302 8-98 (327)
79 3gqw_A Fatty acid AMP ligase; 34.5 1.2E+02 0.0042 32.7 9.7 86 373-459 47-142 (576)
80 1yj7_A ESCJ; mixed alpha/beta, 33.4 1.4E+02 0.0047 26.7 7.9 72 624-701 92-164 (171)
81 3l8c_A D-alanine--poly(phospho 32.7 81 0.0028 33.8 7.7 79 374-453 28-109 (521)
82 3ju7_A Putative PLP-dependent 31.5 1.2E+02 0.0039 31.0 8.3 64 224-290 67-137 (377)
83 2zbc_A 83AA long hypothetical 29.9 1.2E+02 0.0042 22.7 6.3 46 624-683 15-60 (83)
84 3nnk_A Ureidoglycine-glyoxylat 28.2 2.3E+02 0.008 28.6 10.2 66 223-289 51-118 (411)
85 3tla_A MCCF; serine protease, 28.2 1.4E+02 0.0047 30.6 7.9 72 231-302 39-129 (371)
86 4gs5_A Acyl-COA synthetase (AM 28.0 1.5E+02 0.0053 29.8 8.5 93 191-290 36-131 (358)
87 3isl_A Purine catabolism prote 26.9 2.5E+02 0.0085 28.4 10.1 73 217-290 43-117 (416)
88 3isl_A Purine catabolism prote 26.8 2.5E+02 0.0087 28.4 10.1 70 232-302 83-156 (416)
89 3vc3_A Beta-cyanoalnine syntha 26.6 2.2E+02 0.0075 28.6 9.2 70 221-290 72-141 (344)
90 3ezx_A MMCP 1, monomethylamine 25.8 2.1E+02 0.0072 26.5 8.2 82 407-490 104-194 (215)
91 3sr3_A Microcin immunity prote 25.6 2E+02 0.0067 28.9 8.5 72 231-302 9-99 (336)
92 4e5s_A MCCFLIKE protein (BA_56 25.1 1.8E+02 0.0061 29.1 8.0 72 231-302 8-98 (331)
93 4dg8_A PA1221; ANL superfamily 25.0 1.6E+02 0.0055 32.4 8.5 89 354-452 40-131 (620)
94 3ri6_A O-acetylhomoserine sulf 24.9 4.4E+02 0.015 27.2 11.5 68 232-301 118-186 (430)
95 1eg5_A Aminotransferase; PLP-d 24.9 3.1E+02 0.011 27.2 10.3 69 232-301 86-158 (384)
96 2e7j_A SEP-tRNA:Cys-tRNA synth 24.8 4.3E+02 0.015 26.0 11.3 68 232-302 90-167 (371)
97 2huf_A Alanine glyoxylate amin 23.5 5.4E+02 0.019 25.5 11.9 59 232-291 91-153 (393)
98 4eez_A Alcohol dehydrogenase 1 23.3 1.8E+02 0.006 29.1 7.8 78 210-290 136-216 (348)
99 3ite_A SIDN siderophore synthe 22.9 2.1E+02 0.0071 30.8 8.8 97 354-453 33-134 (562)
100 2cvi_A 75AA long hypothetical 22.7 1.2E+02 0.0041 23.0 4.9 46 624-683 15-60 (83)
101 3euc_A Histidinol-phosphate am 22.6 5.5E+02 0.019 25.2 13.4 65 232-299 106-174 (367)
102 2zzt_A Putative uncharacterize 21.8 2.6E+02 0.0088 22.5 7.0 64 623-689 11-74 (107)
103 1z7w_A Cysteine synthase; tran 21.7 3.3E+02 0.011 26.9 9.3 64 227-290 57-121 (322)
104 2duw_A Putative COA-binding pr 20.9 1.3E+02 0.0045 25.9 5.3 51 235-286 71-121 (145)
105 1zl0_A Hypothetical protein PA 20.8 2.1E+02 0.0071 28.4 7.4 72 231-302 13-100 (311)
106 1o69_A Aminotransferase; struc 20.8 3E+02 0.01 27.8 9.1 63 225-290 62-130 (394)
107 3a2b_A Serine palmitoyltransfe 20.4 6.2E+02 0.021 25.2 11.6 67 232-302 124-193 (398)
108 3kgw_A Alanine-glyoxylate amin 20.2 4.1E+02 0.014 26.4 10.1 69 221-289 59-128 (393)
109 3nnk_A Ureidoglycine-glyoxylat 20.1 6.5E+02 0.022 25.0 11.9 68 232-300 85-156 (411)
110 3tqh_A Quinone oxidoreductase; 20.1 2.4E+02 0.0083 27.7 7.9 76 210-290 125-204 (321)
No 1
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.1e-92 Score=877.02 Aligned_cols=638 Identities=16% Similarity=0.149 Sum_probs=512.0
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCC--CC-----CCccC-
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGP--DP-----PAWIP- 86 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~--~~-----~~~~~- 86 (728)
.+++|+..+++.+|.++|++++++..+ +||++||++|++.++ ..+.++.||+..++.... .. .....
T Consensus 301 tlplr~~~~~~~s~~~ll~~v~~~~~~a~~hq~~p~~~i~~~l~---~~~lf~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 377 (1304)
T 2vsq_A 301 VVPRRVKLSEGITFNGLLKRLQEQSLQSEPHQYVPLYDIQSQAD---QPKLIDHIIVFENYPLQDAKNEESSENGFDMVD 377 (1304)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHHHHHHGGGTTSCHHHHHHSSS---CSSSCCCEEEECSSCHHHHSCCCHHHHSEEEEE
T ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhhcccCCHHHHHHHhC---CCcccceeEEEeecccccccccccccCCceeEe
Confidence 367888888999999999999998877 999999999999886 234444444333322100 00 00000
Q ss_pred -ChhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCC
Q 004825 87 -DPEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLS 164 (728)
Q Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (728)
......+|||.+.+. .++++...+ |++ ++|++.+++++.++|.++|+++ .+.|+..+...++..+++.
T Consensus 378 ~~~~~~~~~dL~l~~~-~~~~l~~~~~y~~-----~lf~~~~i~~l~~~~~~lL~~l----~~~p~~~~~~~~~l~~~e~ 447 (1304)
T 2vsq_A 378 VHVFEKSNYDLNLMAS-PGDEMLIKLAYNE-----NVFDEAFILRLKSQLLTAIQQL----IQNPDQPVSTINLVDDRER 447 (1304)
T ss_dssp EEECCCCCSSEEEEEE-CSSSCEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHH----HHSTTSBGGGCCCCCHHHH
T ss_pred eecccccccCeEEEEe-cCCcEEEEEEECC-----ccCCHHHHHHHHHHHHHHHHHh----ccCccccccccCCCCHHHH
Confidence 001235677776553 356677788 999 9999999999999999999997 3445555555444333222
Q ss_pred -CCCCCCCCCCcc---hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Q 004825 165 -NPGGQWLPGAFV---NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAI 240 (728)
Q Consensus 165 -~~~~~w~~~~~~---~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai 240 (728)
.....|+..... .....+|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++|++|+|
T Consensus 448 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i 519 (1304)
T 2vsq_A 448 EFLLTGLNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQ--------TLSYRELDEEANRIARRLQKHGAGKGSVVAL 519 (1304)
T ss_dssp HHHHTTTSCCCCCCCCCCHHHHHHHHHHHCTTSEEEESSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred HHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEECCe--------eEcHHHHHHHHHHHHHHHHhcCcCCcCEEEE
Confidence 234556654332 2456778889999999999998877 9999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCC
Q 004825 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGS 320 (728)
Q Consensus 241 ~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 320 (728)
+++||+++++++|||+|+|++||||||.+|.+|+.+++++++++++|++.........++. ....+.++. .
T Consensus 520 ~~~~s~~~vv~~lailkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~~~-------~~~~~~~~~--~ 590 (1304)
T 2vsq_A 520 YTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAELPY-------TGTTLFIDD--Q 590 (1304)
T ss_dssp CCCSSHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTCCC-------CSEEEESSC--G
T ss_pred EeCCCHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhccCC-------CCcEEEecc--c
Confidence 9999999999999999999999999999999999999999999999998754321111110 011111110 0
Q ss_pred CcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEE
Q 004825 321 SFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIV 400 (728)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~ 400 (728)
... . ...........++++|||+|||||||+||||+++|+++.+. .+....++++++|++
T Consensus 591 ----------~~~------~---~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~~~~~~d~~ 650 (1304)
T 2vsq_A 591 ----------TRF------E---EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYMAFSDQDTF 650 (1304)
T ss_dssp ----------GGG------G---SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSSCCCTTCEE
T ss_pred ----------ccc------c---cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhcCCCCCCEE
Confidence 000 0 01111223456899999999999999999999999999876 455566889999999
Q ss_pred EecCCcchhhhHHHHHHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEe
Q 004825 401 AWPTNLGWMMGPWLVYASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGS 478 (728)
Q Consensus 401 l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~ 478 (728)
+++++++|+.+.+++|.+|+.|+++++++.. .++..+.+.|++++||+++++|++++.|.+.. ...+++||.+++
T Consensus 651 l~~~~~~fd~~~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~---~~~~~~lr~~~~ 727 (1304)
T 2vsq_A 651 LSVSNYAFDAFTFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAG---EDWMKGLRCILF 727 (1304)
T ss_dssp EECSCTTSTHHHHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHC---SHHHHTCSEEEE
T ss_pred EEECCccHHHHHHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhc---hhcCCCccEEEE
Confidence 9999999999999999999999999998743 46788999999999999999999999997653 223678999999
Q ss_pred ecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcc---cccccccccCCCCCceEEEEcCCCCccCCCCCceeE
Q 004825 479 TGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGE 555 (728)
Q Consensus 479 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGE 555 (728)
|||++++++.+++.+.+++++++|.||+||+++.++..... ......++|+|++|++++|+|++++++|.|++ ||
T Consensus 728 gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~--GE 805 (1304)
T 2vsq_A 728 GGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAV--GE 805 (1304)
T ss_dssp ESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCC--EE
T ss_pred ecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCc--eE
Confidence 99999999999988888778999999999999765543322 22345689999999999999999999999997 99
Q ss_pred EEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCC
Q 004825 556 LALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD 635 (728)
Q Consensus 556 l~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~ 635 (728)
|+|++..+..+ |+++++.|+++|+.+|+.+|.|||||||+|||++||.|+|+||+|+|||+||+||+|+|||++|. .|
T Consensus 806 l~i~G~~v~~G-Y~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~-~~ 883 (1304)
T 2vsq_A 806 LCISGMGVSKG-YVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQ-EY 883 (1304)
T ss_dssp EEEEETTCCCC-BTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHH-HS
T ss_pred EEEeccccCcc-ccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHH-hC
Confidence 99987766653 46788999999999999889999999999999999999999999999999999999999999995 89
Q ss_pred CCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHH
Q 004825 636 SNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVL 715 (728)
Q Consensus 636 p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L 715 (728)
|+|.+|+|++.+++.++ ..++||++... ..+.++++ ++|+++||.||+|..|+++++||+|+||||||++|
T Consensus 884 p~V~~a~V~~~~~~~~~-~~l~a~vv~~~----~~~~~~l~----~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L 954 (1304)
T 2vsq_A 884 PGVKDAVVVADRHESGD-ASINAYLVNRT----QLSAEDVK----AHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954 (1304)
T ss_dssp SSCCEEEEEEECCSSSC-CEEEEEEECSS----SSCHHHHH----HHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCC
T ss_pred CCCceEEEEEEecCCCC-EEEEEEEeCCC----CCCHHHHH----HHHHHhChHhhhccEEEEecccCCCCCcccCHhhc
Confidence 99999999998877666 89999999765 34555554 46888999999999999999999999999999999
Q ss_pred HHHHH
Q 004825 716 RKQLA 720 (728)
Q Consensus 716 ~~~~~ 720 (728)
++...
T Consensus 955 ~~~~~ 959 (1304)
T 2vsq_A 955 PKPDQ 959 (1304)
T ss_dssp CCCCG
T ss_pred CCcch
Confidence 76543
No 2
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=2.2e-87 Score=773.92 Aligned_cols=580 Identities=26% Similarity=0.403 Sum_probs=475.6
Q ss_pred CHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCCCCeEEE
Q 004825 118 SFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSLDDIVIR 197 (728)
Q Consensus 118 ~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~ 197 (728)
+|..++++++++++.||.++++. +.|.++++++++.... ...+..+||.++..|.++++|+++++++||++|++
T Consensus 23 ~y~~l~~~~~~~p~~~w~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~wf~~~~~n~~~~~l~~~a~~~pd~~Al~ 96 (652)
T 1pg4_A 23 QYETKYKQSINDPDTFWGEQGKI--LDWITPYQKVKNTSFA----PGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAII 96 (652)
T ss_dssp HHHHHHHHHHHCHHHHHHHHGGG--SCCSBCCSCCEEEECC----TTCCEEEESTTCEECHHHHHTGGGHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCHHHHHHHHHhh--CceecCCcccccCccc----cCCCCCEECCCCChhHHHHHHHHHhccCCCceEEE
Confidence 46888999999999999999886 5788888887754210 01235689999999999999999999999999999
Q ss_pred EeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Q 004825 198 WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISAR 277 (728)
Q Consensus 198 ~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~ 277 (728)
+.+. ..+..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.++
T Consensus 97 ~~~~--~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA~~~~Gav~vpl~~~~~~~~l~~~ 174 (652)
T 1pg4_A 97 WEGD--DTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGC 174 (652)
T ss_dssp EECS--STTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTSCHHHHHHH
T ss_pred EEcC--CCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHH
Confidence 8543 12234589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCceEEEEecceecCCcccchHhhH----hhc----CCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccc
Q 004825 278 LRISKAKAIFTQDLIIRGDKSIPLYRVI----DAQ----APLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFA 349 (728)
Q Consensus 278 l~~~~~~~il~~~~~~~~~~~~~~~~~~----~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (728)
++++++++||+++.....++.++....+ ... ...+++++........ ......+|.++...... ...
T Consensus 175 l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~ 249 (652)
T 1pg4_A 175 IIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDIDW-QEGRDLWWRDLIEKASP----EHQ 249 (652)
T ss_dssp HHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCCC-CBTTEEEHHHHHTTSCS----CCC
T ss_pred HHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCcccc-cCCCceeHHHHHhhcCC----CCC
Confidence 9999999999999877666655544222 111 1234444432211110 11224567777653221 122
Q ss_pred cccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHH-HHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEEE
Q 004825 350 AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIAL 427 (728)
Q Consensus 350 ~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lvl 427 (728)
.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.+|++|++++ +.++.+|+.|+++++
T Consensus 250 ~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~g~~~~~~~~L~~G~t~vl 329 (652)
T 1pg4_A 250 PEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLM 329 (652)
T ss_dssp CCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHTTHHHHHTTCEEEE
T ss_pred ccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhcCCCCCCEEEEccCCeeeechHHHHHHHHHcCceEEE
Confidence 3345679999999999999999999999999877654 44566899999999999999999998 789999999999999
Q ss_pred eCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccC--CCCe
Q 004825 428 YNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL--YKPV 500 (728)
Q Consensus 428 ~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~--~~~l 500 (728)
+++. +++..+++.|++++||+++++|++++.|++... ....++++||.+++|||++++++++++.+.++ ++++
T Consensus 330 ~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i 409 (652)
T 1pg4_A 330 FEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPV 409 (652)
T ss_dssp ECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCE
T ss_pred ECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccccccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcE
Confidence 9864 477899999999999999999999999988643 34567899999999999999999999988775 3789
Q ss_pred EecccccccccccccCCc-ccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcc-ccCccccccc
Q 004825 501 IEYCGGTEIGGGFITGSL-LQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASST-LLNANHYDVY 578 (728)
Q Consensus 501 ~n~YG~TE~~~~~~~~~~-~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~-~~~~~~~~~~ 578 (728)
+|.||+||+++.++...+ ..+...+++|+|++|++++|+|++|+++|.|+. |||+|++.+.+...+ +++++.+.+.
T Consensus 410 ~~~YG~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~--GEl~i~g~~p~~~~gY~~~~e~~~~~ 487 (652)
T 1pg4_A 410 VDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATE--GNLVITDSWPGQARTLFGDHERFEQT 487 (652)
T ss_dssp EEEBCCGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEE--EEEEECSCCTTCCCEETTCHHHHHHH
T ss_pred EccccCcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCce--EEEEEccCCCchhhhhcCCHHHHHhh
Confidence 999999999976555433 223456899999999999999999999999975 999997743333333 4455555443
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|... .+| ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.++|
T Consensus 488 ~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~~~g-~~l~a 561 (652)
T 1pg4_A 488 YFST--FKN--MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALV-AHPKIAEAAVVGIPHAIKG-QAIYA 561 (652)
T ss_dssp HHSS--STT--SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hhhc--CCC--EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEEcCCCC-eEEEE
Confidence 3211 124 9999999999999999999999999999999999999999996 9999999999999988777 89999
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
||++++ +. ...+++.+.|+++|+++||+||+|..|+++++||+|+||||+|++|++++..
T Consensus 562 ~Vv~~~-~~--~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 621 (652)
T 1pg4_A 562 YVTLNH-GE--EPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAG 621 (652)
T ss_dssp EEEECT-TC--CCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHHHHT
T ss_pred EEEECC-CC--CCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHHHhC
Confidence 999987 54 2334567788889999999999999999999999999999999999999876
No 3
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5e-87 Score=771.22 Aligned_cols=592 Identities=24% Similarity=0.379 Sum_probs=475.2
Q ss_pred CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCC
Q 004825 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSL 191 (728)
Q Consensus 112 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~p 191 (728)
+...+.+|..++++++++++.||.++++.. +.|.++++++++.... ......+..+||.++..|.++++|+++++++|
T Consensus 19 ~~~~~~~y~~~~~~s~~~~~~fw~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~wf~~~~~n~~~~~l~~~a~~~p 96 (663)
T 1ry2_A 19 SHMGLQDYQRLHKESIEDPAKFFGSKATQF-LNWSKPFDKVFIPDPK-TGRPSFQNNAWFLNGQLNACYNCVDRHALKTP 96 (663)
T ss_dssp -----CHHHHHHHHHHHCHHHHHHHHHHHH-CCEEECCSCSBCBCSS-SCSBCSTTCCBSTTCEECHHHHHTHHHHTTCT
T ss_pred cCCChhhHHHHHHHHhcCHHHHHHHHHhhc-CeeecCCceeecCccc-cccCCCCCCCcCCCCCccHHHHHHHHHhccCC
Confidence 555667889999999999999999999862 5799999988865410 00001223689999999999999999999999
Q ss_pred CCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHH-HcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCC
Q 004825 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALN-ALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFA 270 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~-~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~ 270 (728)
|++|+++.+. ..+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++|||+++|++++|++|.++
T Consensus 97 d~~Al~~~~~--~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA~~~~Gav~vpl~~~~~ 174 (663)
T 1ry2_A 97 NKKAIIFEGD--EPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFS 174 (663)
T ss_dssp TSEEEEEECS--STTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCTTSC
T ss_pred CceEEEEEcC--CCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEeeCCCCC
Confidence 9999998643 1223458999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceEEEEecceecCCcccchHhhHhh----cC--CcEEEEcCCCC-CcccccCCCCcCHHHHHHhhhcc
Q 004825 271 SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDA----QA--PLAIVIPAKGS-SFSMKLRDGDISWLDFLERVRKL 343 (728)
Q Consensus 271 ~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~----~~--~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 343 (728)
.+++.++++++++++||+++...+.++.++....++. .+ ..+++++.... ... .......+|.++.....
T Consensus 175 ~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-- 251 (663)
T 1ry2_A 175 SNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRETPGVRHVLVYRKTNNPSVA-FHAPRDLDWATEKKKYK-- 251 (663)
T ss_dssp HHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSCTTCCEEEEECSSCCSSCC-CCSSSEEEHHHHHTTSC--
T ss_pred HHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhCCCCceEEEEecCCCCccc-cCCCccccHHHHHhhcC--
Confidence 9999999999999999999987776666665432222 11 23444443221 000 01123456777665322
Q ss_pred ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHH-HHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhh
Q 004825 344 KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA-DAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLN 421 (728)
Q Consensus 344 ~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~-~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~ 421 (728)
...+.....+++++||+|||||||+||||+++|++++..+. .....++++++|++++.++++|+++. +.++.+|+.
T Consensus 252 --~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~g~~~~~~~~L~~ 329 (663)
T 1ry2_A 252 --TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLY 329 (663)
T ss_dssp --SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHSCCCSSCEEEECSCTTSHHHHHHTTHHHHHH
T ss_pred --CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhcCCCCCcEEEEcCCcHHhhhhHHHHHHHHHh
Confidence 11233455689999999999999999999999999876654 34456899999999999999999998 788999999
Q ss_pred CcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 422 GASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 422 G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
|++++++++. +++..+++.|++++||++.++|++++.|.+... ....++++||.+++|||++++++++++.+.++
T Consensus 330 G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g 409 (663)
T 1ry2_A 330 GCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIG 409 (663)
T ss_dssp TSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTSSSSCCCTTCCEEEECSSCCCHHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccccccCCcCceEEEEEEcCCCCHHHHHHHHHHhC
Confidence 9999999764 467899999999999999999999999987654 34567899999999999999999999998775
Q ss_pred --CCCeEecccccccccccccCCc--ccccccccccCCCCCceEEEEcC-CCCccCC-CCCceeEEEEeccccCCCc-cc
Q 004825 497 --YKPVIEYCGGTEIGGGFITGSL--LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQ-NVPGMGELALSPLIFGASS-TL 569 (728)
Q Consensus 497 --~~~l~n~YG~TE~~~~~~~~~~--~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~-g~~giGEl~v~~~~~~~~~-~~ 569 (728)
.++++|.||+||+++.++...+ ..+...+++|+|++|++++|+|+ +|++++. |+. |||+|.++..+... |+
T Consensus 410 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~--Gel~i~g~~p~~~~gy~ 487 (663)
T 1ry2_A 410 KNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAE--GVLAVKAAWPSFARTIW 487 (663)
T ss_dssp CSSSCEEECBCCTTTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCE--EEEEESSCCTTSCCEET
T ss_pred CCCceEEEeECCccccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcc--eEEEEecCCCchhcccc
Confidence 3789999999999876555433 23456789999999999999999 8999988 775 99999764333233 34
Q ss_pred cCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCC
Q 004825 570 LNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPP 649 (728)
Q Consensus 570 ~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~ 649 (728)
++++.+.+.|... .+| ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++
T Consensus 488 ~~~~~~~~~~~~~--~~g--~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~-~~p~V~ea~Vvg~~~~ 562 (663)
T 1ry2_A 488 KNHDRYLDTYLNP--YPG--YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAII-EDPIVAECAVVGFNDD 562 (663)
T ss_dssp TCHHHHHHHHTSS--STT--SEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHH-SSTTEEEEEEECCCCC
T ss_pred cChHHHHHhhhcC--CCC--EEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHH-hCCCcceEEEEEEecC
Confidence 5556555444321 124 9999999999999999999999999999999999999999995 9999999999999988
Q ss_pred CCCceEEEEEEEecCCCCCC--CCHH---HHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 650 DGGPEQLTIVVVFKDSNYTP--PDLN---QLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 650 ~~g~~~l~a~vv~~~~~~~~--~~~~---~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
..| +.++|||++++ +... ...+ ++.+.|+++|+++||+||+|..|+++++||+|+||||+|++|++++..
T Consensus 563 ~~g-~~~~a~Vv~~~-~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~~~~ 637 (663)
T 1ry2_A 563 LTG-QAVAAFVVLKN-KSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRKILAG 637 (663)
T ss_dssp TTS-CCCEEEEEEC-------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCBCHHHHHHSCC-
T ss_pred CCC-eEEEEEEEEcC-CCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCchHHHHHHHHcC
Confidence 777 88999999887 4310 1011 467788889999999999999999999999999999999999998765
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.9e-82 Score=721.28 Aligned_cols=523 Identities=20% Similarity=0.259 Sum_probs=414.7
Q ss_pred CCCCCCCcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Q 004825 168 GQWLPGAFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN 247 (728)
Q Consensus 168 ~~w~~~~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~ 247 (728)
.+|......|..+++|+++++++||++|+++.+. .+..+++||+||+++++++|++|+++|+++||+|+|+++|+++
T Consensus 47 ~~~~~~~~~n~~~~~l~~~a~~~pd~~Al~~~~~---~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e 123 (580)
T 3etc_A 47 FKILVPENFNFAYDVVDVYARDSPEKLAMIWCDD---YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYD 123 (580)
T ss_dssp CCBCCCSSCCHHHHTHHHHHHHCTTCEEEEEEES---SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTH
T ss_pred CCCCCcccchHHHHHHHHHHhhCCCCEEEEEEcC---CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH
Confidence 4577677789999999999999999999998643 1234689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC---CcEEEEcCCCCCcc
Q 004825 248 SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA---PLAIVIPAKGSSFS 323 (728)
Q Consensus 248 ~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~---~~~~~i~~~~~~~~ 323 (728)
+++++|||+|+|+++||++|.++.+++.++++++++++||++.... ..... ....... ...+.+...
T Consensus 124 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----- 194 (580)
T 3etc_A 124 FWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDD----VPEQVDEAHAECGDIPLKKAKVGGD----- 194 (580)
T ss_dssp HHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTT----HHHHHHHHHHHHCSCCCEEEEESSS-----
T ss_pred HHHHHHHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchh----HHHHHHHHhhhCCCcceEEEEeCCc-----
Confidence 9999999999999999999999999999999999999999987531 00111 2222222 233333321
Q ss_pred cccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEec
Q 004825 324 MKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWP 403 (728)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~ 403 (728)
...+...+.+...................++++|||+|||||||.||||+++|.+++..+......+++.+++++++.
T Consensus 195 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (580)
T 3etc_A 195 --VLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTV 272 (580)
T ss_dssp --CCTTCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTSCCCTTCEEEEC
T ss_pred --cccccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhhCCCCCceEEEe
Confidence 112345566655543321111111135678999999999999999999999999998888776667889999999999
Q ss_pred CCcchhhhHHH-HHHHhhhCcEEEEeC-CCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecC
Q 004825 404 TNLGWMMGPWL-VYASLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGE 481 (728)
Q Consensus 404 ~~~~~~~~~~~-~~~~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe 481 (728)
++++|+.+.+. ++.++..|+++++.+ ...++..+++.|+++++|+++++|++++.|++.. ....++++||.+++|||
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~~~l~~lr~i~~gGe 351 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED-LSHYNFSTLKYAVVAGE 351 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC-C---CCTTCCEEEECSS
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc-cccCCCccceEEEEccC
Confidence 99999999864 789999999999985 4567889999999999999999999999998863 34567899999999999
Q ss_pred CCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEecc
Q 004825 482 ASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPL 561 (728)
Q Consensus 482 ~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~ 561 (728)
++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|+|+. |||+|.+.
T Consensus 352 ~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~--GEl~v~~~ 427 (580)
T 3etc_A 352 PLNPEVFNRFLEFT-GIKLMEGFGQTETVVTIATFP-WMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEE--GEIVINTM 427 (580)
T ss_dssp CCCHHHHHHHHHHH-SCCCEEEECCTTSSCCEECCT-TSCCCTTCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEECT
T ss_pred CCCHHHHHHHHHHh-CCeEecccccccccceeecCC-CCCCCCCccccCCCCCEEEEECCCCCCCCCCCc--eEEEEecC
Confidence 99999999998776 489999999999987554433 234566899999999999999999999999987 99999641
Q ss_pred ---ccCC-CccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCC
Q 004825 562 ---IFGA-SSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSN 637 (728)
Q Consensus 562 ---~~~~-~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~ 637 (728)
..+. ..|+++++.|++.|.+ | ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+
T Consensus 428 ~g~~~~~~~gY~~~p~~t~~~f~~-----g--wy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~-~~p~ 499 (580)
T 3etc_A 428 EGKPVGLFVHYGKDPERTEETWHD-----G--YYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALI-QHPA 499 (580)
T ss_dssp TCCCTTCCCEETTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHT-TSTT
T ss_pred CCCCCeeeccccCCHhHHHhhcCC-----C--EEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCC
Confidence 1111 1256678888888852 3 9999999999999999999999999999999999999999995 9999
Q ss_pred eeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 638 VLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 638 V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
|.+|+|++.+++..| +.++|+|++.+ +. ...+++.+.|+++++++||+||+|..|+++++||+|+||||+|++|++
T Consensus 500 V~~a~Vvg~~~~~~g-~~~~a~vv~~~-~~--~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~ 575 (580)
T 3etc_A 500 VLECAITGVPDPVRG-QVIKATIVLTK-DY--TPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRD 575 (580)
T ss_dssp EEEEEEEEEEETTTE-EEEEEEEEECT-TC--CCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC----------------
T ss_pred eeeEEEEeeeccCCC-cEEEEEEEECC-CC--CCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHh
Confidence 999999999998887 89999999987 54 234567788889999999999999999999999999999999999999
Q ss_pred HHHh
Q 004825 718 QLAQ 721 (728)
Q Consensus 718 ~~~~ 721 (728)
++.+
T Consensus 576 ~~~~ 579 (580)
T 3etc_A 576 KDQS 579 (580)
T ss_dssp ----
T ss_pred Hhhc
Confidence 8753
No 5
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=3.3e-82 Score=724.74 Aligned_cols=479 Identities=18% Similarity=0.146 Sum_probs=398.8
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+|
T Consensus 28 tl~~~~~~~a~~~Pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~lailk 99 (620)
T 4dg8_A 28 TVVARFSEMAALHPHREAIRDRFG--------SVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCLLAILL 99 (620)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCeEEEcCCC--------cCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 456778999999999999999887 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
+|++|||+||.+|.+++.+++++++++++|+++.........+ ...+..
T Consensus 100 aGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~~~~~-----------~~~~~~-------------------- 148 (620)
T 4dg8_A 100 SGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPANGLP-----------CVPVRH-------------------- 148 (620)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCCTTSC-----------EEEGGG--------------------
T ss_pred hCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccccCCc-----------eeeecc--------------------
Confidence 9999999999999999999999999999997664321110000 000000
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (728)
. .............++++|||+|||||||+||||+++|+++.+.+.+ ...++++++|++++.+|++|+++++++|.
T Consensus 149 --~-~~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 224 (620)
T 4dg8_A 149 --L-PAAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFLAFAPQMRFLVNSPLSFDAATLEIWG 224 (620)
T ss_dssp --C-CCCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGGTTCTTCEEEECSCTTSTHHHHHHHH
T ss_pred --C-CcCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhhCCCCCCEEEEECccCHHHHHHHHHH
Confidence 0 0001111223346899999999999999999999999999887765 45678999999999999999999999999
Q ss_pred HhhhCcEEEEeC-CCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 418 SLLNGASIALYN-GSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 418 ~L~~G~~lvl~~-~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
+|+.|+++++.+ ...++..+++.|+++++|++.++|++++.|++.. ...+++||.+++|||+++++..+++.+.++
T Consensus 225 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~---~~~l~~lr~v~~gGe~l~~~~~~~~~~~~~ 301 (620)
T 4dg8_A 225 ALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLD---PDCLGGLRQLLTGGDILSVPHVRRALLRHP 301 (620)
T ss_dssp HHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHC---GGGGTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcC---hhhCCCccEEEEEeCcCCHHHHHHHHHhCC
Confidence 999999999975 3457788999999999999999999999998753 345789999999999999999888888777
Q ss_pred CCCeEecccccccccccccCCc---ccccccccccCCCCCceEEEEcCCCCc-cCCCCCceeEEEEeccccCCCccccCc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSL---LQAQSLAAFSTPAMGCKLFILGNDGCP-IPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~---~~~~~~~~iG~p~~~~~v~i~d~~g~~-vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
+++++|.||+||+++.++.... .......++|+|++|++++|+|+++++ +|.|++ |||+|++..+..+ |++++
T Consensus 302 ~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~G~~v~~G-Y~~~p 378 (620)
T 4dg8_A 302 RLHLVNGYGPTENTTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRA--GEIVAFGAGLAQG-YRNDA 378 (620)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCC--EEEEEEETTCCSE-ETTCH
T ss_pred CeEEEeeEchhhhhhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCc--eEEEEeccccccc-cCCCh
Confidence 8999999999999976543322 122345789999999999999999988 789987 9999977766543 46788
Q ss_pred cccccccccCCCCCCc--eeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004825 573 NHYDVYFSGMPSRNGQ--ILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 650 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~--~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~ 650 (728)
+.|++.|..+|. .|. +||+|||+|++++||+|+|+||+|||||++|+||+|+|||++|. .||+|.+|+|++.+++.
T Consensus 379 ~~t~~~f~~~p~-~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~-~~p~V~~a~Vv~~~~~~ 456 (620)
T 4dg8_A 379 ARTRASFVELPY-RGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFR-RQPGILDCALLVRERNG 456 (620)
T ss_dssp HHHHHHEEEEEE-TTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHH-TSTTEEEEEEEEEEETT
T ss_pred hhhhhhhccCCC-CCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHH-hCCCccEEEEEEEeCCC
Confidence 899999998884 344 89999999999999999999999999999999999999999995 99999999999987764
Q ss_pred CCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 651 GGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
. ..++++++... . .. + ++|+++||.||+|..|+++++||+|+||||||++|++++.+
T Consensus 457 ~--~~lv~~~~~~~-~---~~----~----~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 457 V--KQLLCAWTGKA-D---AS----P----QALLRQLPTWQRPHACVRVEALPLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp E--EEEEEEEEECT-T---CC----C----HHHHHHSCGGGSCSEEEECSSCCCC----CCHHHHHHHTCS
T ss_pred c--eEEEEEEecCh-H---HH----H----HHHHHhChhhcCCcEEEEECcCCCCcccCHhHHHHhhcccc
Confidence 3 56677766543 1 11 1 24667899999999999999999999999999999987754
No 6
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.8e-81 Score=708.69 Aligned_cols=516 Identities=18% Similarity=0.201 Sum_probs=389.0
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.+.....+..+++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 20 ~l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 99 (549)
T 3g7s_A 20 SLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVMTIYALWR 99 (549)
T ss_dssp CTTHHHHHHHHHHTTSEEEEEESSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCceEEEeCCCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHH
Confidence 34567888899999999999987422223345999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
+|+++||+||.++.+++.+++++++++++|++..... .. ..........+++.. .....+.++
T Consensus 100 ~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~ 163 (549)
T 3g7s_A 100 VAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYE------NFKPVLEKTGVERVFVVG----------GEVNSLSEV 163 (549)
T ss_dssp TTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHH------HHHHHHTTSCCCEEEEET----------CSSSCHHHH
T ss_pred hCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHH------HHHHHHhhCCCcEEEEeC----------CCCcCHHHH
Confidence 9999999999999999999999999999999975421 11 222222222222211 123456666
Q ss_pred HHhhhccccCccccccCCC-CCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 337 LERVRKLKENEFAAVEQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~-~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
...... ........+ +++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..+
T Consensus 164 ~~~~~~----~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~~~~~~ 239 (549)
T 3g7s_A 164 MDSGSE----DFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVATGLSHMDTIVGCMPMFHSAEFGLV 239 (549)
T ss_dssp HHHSCS----CCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHHCCCTTCEEECCSCTTSHHHHHHH
T ss_pred HhcCcc----ccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHcCCCCCCEEEEeCcHHHHHHHHHH
Confidence 554322 112223333 899999999999999999999999999999988888999999999999999999998778
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCC--CCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCID--GYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~--~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
+.++..|+++++.+ ..++..+++.|+++++|++.++|+++..|++..... ..+++++|.+++|||++++++.+++.+
T Consensus 240 ~~~l~~G~~~~~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~ 318 (549)
T 3g7s_A 240 NLMVTVGNEYVVMG-MFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLK 318 (549)
T ss_dssp TTHHHHCCEEEEES-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCCCCCTTCCEEEEESSCCCHHHHHHHHH
T ss_pred HHHHhcCceEEEcC-CCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcccCCccceeEEEeCCccCCHHHHHHHHH
Confidence 89999999999987 467889999999999999999999999998753322 256889999999999999999998877
Q ss_pred c----cC--CCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCC
Q 004825 494 R----AL--YKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGAS 566 (728)
Q Consensus 494 ~----~~--~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~ 566 (728)
. ++ .++++|.||+||+++.++...........++|+|++|++++|+| ++|+++|.|+. |||+|.+..+..+
T Consensus 319 ~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G 396 (549)
T 3g7s_A 319 LAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGES--GEIVIRGPNIFKG 396 (549)
T ss_dssp HHHHHSSCTTCEEEEEEECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCC--EEEEEESTTSCSE
T ss_pred HHHhhcCCccccccceEeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCc--eEEEEECcchhhh
Confidence 6 43 37899999999999876666554445678999999999999999 88999999987 9999977666543
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEee
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~ 646 (728)
|+++++.|++.|..++ +|.+||+|||+|++++||.|+|+||.|||||++|+||+|.|||++|. .||+|.+|+|++.
T Consensus 397 -Y~~~~~~t~~~f~~~~--~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~ 472 (549)
T 3g7s_A 397 -YWKREKENQECWWYDE--KGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLM-KHEAVMDVAVIGK 472 (549)
T ss_dssp -ETTCTTGGGTSEEECT--TCCEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHT-TSTTEEEEEEECC
T ss_pred -hCCChhhhhhhhhccC--CCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHH-hCCCeeeEEEEee
Confidence 4678888998886443 47889999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCC-CCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhccc
Q 004825 647 PPPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQN 725 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~ 725 (728)
+++..| +.++|+|++++ +. ...+.++++ ++|+++||.||+|..|+++++||+|+||||||++|+++..+.+++
T Consensus 473 ~~~~~g-~~~~a~vv~~~-~~~~~~~~~~l~----~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~~~~ 546 (549)
T 3g7s_A 473 PDEEAG-EVPKAFIVLKP-EYRGKVDEEDII----EWVRERISGYKRVREVEFVEELPRTASGKLLRRLLREKEAEGHHH 546 (549)
T ss_dssp CC-------CEEEEEECS-TTTTSCCHHHHH----HHHHTTCC-----CCCCEEEECC----------------------
T ss_pred EccccC-ceEEEEEEECC-CccCcCCHHHHH----HHHHHhccCcccceEEEEeccCCCCCCcCEeHHHHHHHhhccccc
Confidence 888777 88999999887 42 134555544 468899999999999999999999999999999999999886554
Q ss_pred C
Q 004825 726 S 726 (728)
Q Consensus 726 ~ 726 (728)
+
T Consensus 547 ~ 547 (549)
T 3g7s_A 547 H 547 (549)
T ss_dssp -
T ss_pred c
Confidence 3
No 7
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=4e-80 Score=699.03 Aligned_cols=503 Identities=18% Similarity=0.222 Sum_probs=420.7
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++|+++|+++...+ +++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 23 ~l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~la~~~ 96 (536)
T 3ni2_A 23 PLHSYVLENLSNHSSKPCLINGANG------DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASH 96 (536)
T ss_dssp CHHHHHTTTGGGSTTSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhcCCCceEEEECCCC------CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 4567788899999999999986421 2899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
+|++++|++|.++.+++.+++++++++++|++...... + ..........++.++.. ..+...+.++.
T Consensus 97 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~---~--~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~ 163 (536)
T 3ni2_A 97 RGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEK---V--KDFARESDVKVMCVDSA--------PDGCLHFSELT 163 (536)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHH---H--HHHHHHHTCEEEESSCC--------CTTCEETHHHH
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHH---H--HHHHhhcCceEEEecCC--------CCCccCHHHHh
Confidence 99999999999999999999999999999998754211 0 02222223333333221 12334455554
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH----hcCCCCCCEEEecCCcchhhhH-
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP- 412 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~- 412 (728)
..... ..+.....++++|||+|||||||.||||+++|+++++.+.+... .+++.++|++++.+|++|++++
T Consensus 164 ~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 239 (536)
T 3ni2_A 164 QADEN----EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALN 239 (536)
T ss_dssp TSCGG----GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSSCSSCCCTTCCEEECSCTTSHHHHH
T ss_pred hcccc----ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhccccccCCCCCEEEEecChHHHHHHH
Confidence 43221 22334567899999999999999999999999999988776543 3568899999999999999998
Q ss_pred HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHH
Q 004825 413 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLM 492 (728)
Q Consensus 413 ~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 492 (728)
..++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.
T Consensus 240 ~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 318 (536)
T 3ni2_A 240 SIMLCGLRVGAPILIMPK-FEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSPDLDKHDLSSLRMIKSGGAPLGKELEDTVR 318 (536)
T ss_dssp HTHHHHHHHTCCEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHTCSCGGGSCCTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCC-CCHHHHHHHHHHhCCeEEEccHHHHHHHHhCcccccCCCccceEEEECCCCCCHHHHHHHH
Confidence 567899999999999864 5778999999999999999999999999988766677889999999999999999999999
Q ss_pred hccCCCCeEecccccccccccccCCc----ccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCCc
Q 004825 493 GRALYKPVIEYCGGTEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASS 567 (728)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~~ 567 (728)
+.+++++++|.||+||+++.++.... ......+++|+|++|++++|+| ++|+++|.|+. |||+|++..+..+
T Consensus 319 ~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 395 (536)
T 3ni2_A 319 AKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQP--GEICIRGDQIMKG- 395 (536)
T ss_dssp HHCTTSEEEEEEECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCC--EEEEEESTTSCSE-
T ss_pred HHCCCCCccccccccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCc--cEEEEeCcccchh-
Confidence 98888999999999999865443321 1233567899999999999999 56999999987 9999977766543
Q ss_pred cccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeec
Q 004825 568 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 647 (728)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~ 647 (728)
|+++++.|++.|..+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+
T Consensus 396 Y~~~p~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~ 468 (536)
T 3ni2_A 396 YLNDPEATSRTIDKE------GWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-AHPEISDAAVVGLK 468 (536)
T ss_dssp ETTCHHHHHHHBCTT------SCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEE
T ss_pred hcCChhHHHhhccCC------CceEcccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeee
Confidence 467788888888533 39999999999999999999999999999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 648 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++..| +.++|||+..+ +. ..+.++++ ++++++||.||+|..|+++++||+|+||||||++|++++++
T Consensus 469 ~~~~g-~~~~a~vv~~~-~~-~~~~~~l~----~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 469 DEDAG-EVPVAFVVKSE-KS-QATEDEIK----QYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp ETTTE-EEEEEEEEECT-TC-CCCHHHHH----HHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC---
T ss_pred cCCCC-ceeEEEEEecC-CC-CCCHHHHH----HHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHhcc
Confidence 88777 89999999876 44 45555554 46889999999999999999999999999999999998765
No 8
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.4e-79 Score=688.68 Aligned_cols=496 Identities=20% Similarity=0.195 Sum_probs=412.9
Q ss_pred hhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCc
Q 004825 181 NCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGY 260 (728)
Q Consensus 181 ~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~ 260 (728)
++|+++++++|+++|+.....++ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~~~~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~Ga 78 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIETAAG-----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAGG 78 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEETTC-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHhCCCCceEEEecCCC-----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcCc
Confidence 45778888999999888532211 2899999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhh
Q 004825 261 IVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERV 340 (728)
Q Consensus 261 ~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (728)
++||++|.+|.+++.+++++++++++|++........ .........+..+... ....+.+....
T Consensus 79 ~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------~~~~~~~~~~~- 142 (503)
T 4fuq_A 79 VYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIA-----AIAAKVGATVETLGPD----------GRGSLTDAAAG- 142 (503)
T ss_dssp EEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTH-----HHHHHHTCEEEECCTT----------SCSHHHHHHHT-
T ss_pred EEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHH-----HHHhhcCceEEEecCC----------cccccchhhhc-
Confidence 9999999999999999999999999999876432111 2222222222222211 11112221111
Q ss_pred hccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HHHHHHh
Q 004825 341 RKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WLVYASL 419 (728)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L 419 (728)
...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++ ..++.++
T Consensus 143 ---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~~l 219 (503)
T 4fuq_A 143 ---ASEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTL 219 (503)
T ss_dssp ---SCSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCSSSHCCCCCCHHHHH
T ss_pred ---CCCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHH
Confidence 112223345678999999999999999999999999999999998899999999999999999999997 4577899
Q ss_pred hhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCC
Q 004825 420 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 499 (728)
Q Consensus 420 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (728)
+.|+++++.+. .++..+++.++ ++|++.++|+++..+++........++++|.+++|||++++++.+++.+.++ ++
T Consensus 220 ~~g~~~~~~~~-~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~-~~ 295 (503)
T 4fuq_A 220 FARGSMIFLPK-FDPDKILDLMA--RATVLMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHREWSAKTG-HA 295 (503)
T ss_dssp HTTCEEEECSS-CCHHHHHHHHT--TCCEEEECHHHHHHHHTCTTCSTTTTTTCCEEEECSSCCCHHHHHHHHHHHS-CC
T ss_pred HhCCEEEEcCC-CCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCCccccchhhcEEEEECCCCCCHHHHHHHHHHhC-CC
Confidence 99999999864 67788999887 8999999999999999887666677899999999999999999999988764 88
Q ss_pred eEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCCccccCccccccc
Q 004825 500 VIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~ 578 (728)
++|.||+||+++..+ .........+++|+|++|++++|+| ++|+++|.|+. |||+|++..+..+ |+++++.|++.
T Consensus 296 ~~~~YG~TE~~~~~~-~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~~t~~~ 371 (503)
T 4fuq_A 296 VLERYGMTETNMNTS-NPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDI--GMIEVKGPNVFKG-YWRMPEKTKSE 371 (503)
T ss_dssp EEECCEETTTEECBC-CCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSCCC-BTTCHHHHHHT
T ss_pred ccceEcccccCcccc-cCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCc--eEEEEECCchhhh-hcCChhhhHhh
Confidence 999999999987643 2223344567899999999999999 77999999997 9999977766543 46778889999
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|..+. ||+|||+|++++||.|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++..+ +.+++
T Consensus 372 f~~~g------~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~-~~~~a 443 (503)
T 4fuq_A 372 FRDDG------FFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID-AMPGVVESAVIGVPHADFG-EGVTA 443 (503)
T ss_dssp BCTTS------CEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hCCCC------CeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHH-hCCCeeEEEEEEeEchhcC-ceeEE
Confidence 97543 9999999999999999999999999999999999999999995 9999999999999988777 89999
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+|+..+ +. ..+.+++++ +++++||.||+|..|+++++||+|+|||+||++|+++++++
T Consensus 444 ~v~~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 501 (503)
T 4fuq_A 444 VVVRDK-GA-TIDEAQVLH----GLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYKDI 501 (503)
T ss_dssp EEEECT-TC-CCCHHHHHH----HHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTTTT
T ss_pred EEEeCC-CC-CCCHHHHHH----HHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHHHh
Confidence 999887 54 456555544 68899999999999999999999999999999999998764
No 9
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=6.6e-80 Score=693.87 Aligned_cols=498 Identities=16% Similarity=0.176 Sum_probs=420.2
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
.++|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~~~~G 75 (512)
T 3fce_A 4 LEQIEKWAAETPDQTAFVWRDA--------KITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAG 75 (512)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCceEEEeCCc--------eEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHHHHhC
Confidence 3567888899999999999887 99999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHh
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 339 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 339 (728)
+++||++|.++.+++.+++++++++++|++........ .. .++. ...+.++...
T Consensus 76 ~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~-----------~~--~~~~-------------~~~~~~~~~~ 129 (512)
T 3fce_A 76 HAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTDL-----------PV--RIVS-------------EDNLKDIFFT 129 (512)
T ss_dssp CCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSCC-----------SS--EEEE-------------THHHHHHHHH
T ss_pred CEEEeeCCCCcHHHHHHHHHhcCCCEEEecCccccccc-----------cc--ceec-------------hhhhhhhccc
Confidence 99999999999999999999999999999864321100 00 0000 0011222211
Q ss_pred hhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHh
Q 004825 340 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 419 (728)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (728)
.. .....+.....+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+|
T Consensus 130 ~~--~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l 207 (512)
T 3fce_A 130 HK--GNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDFNLQTGQVFLNQAPFSFDLSVMDIYPSL 207 (512)
T ss_dssp TT--TCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHTTCCSSCEEEECSCTTSGGGHHHHHHHH
T ss_pred cc--ccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHhHHHHHHHHHH
Confidence 11 1112233456789999999999999999999999999999999988899999999999999999999999999999
Q ss_pred hhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCC
Q 004825 420 LNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALY 497 (728)
Q Consensus 420 ~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~ 497 (728)
+.|+++++.+.. .++..+++.|+++++|++.++|+++..++.........+++||.+++|||++++++.+++.+.+++
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~ 287 (512)
T 3fce_A 208 VTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEVLPNEVARKLIERFPK 287 (512)
T ss_dssp HTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSCCCHHHHHHHHHHCTT
T ss_pred hCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCcCCHHHHHHHHHHCCC
Confidence 999999998753 367789999999999999999999999988766666778999999999999999999999999888
Q ss_pred CCeEecccccccccccccCCccc----ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcc
Q 004825 498 KPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573 (728)
Q Consensus 498 ~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~ 573 (728)
++++|.||+||+++.++...... .....++|+|+++++++|+|++|+++|.|+. |||+|.++.+..+ |+++++
T Consensus 288 ~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~~ 364 (512)
T 3fce_A 288 ATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK--GEIVIVGPSVSVG-YLGSPE 364 (512)
T ss_dssp CEEEEEECCGGGSSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSC--EEEEEESTTSCSC-BTTCHH
T ss_pred CEEEeCcccChhhhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCe--EEEEEeccccChh-hcCCch
Confidence 99999999999987655433211 2245689999999999999999999999987 9999977665543 467788
Q ss_pred ccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004825 574 HYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653 (728)
Q Consensus 574 ~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~ 653 (728)
.|++.|.. .+|.+||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.+++..+
T Consensus 365 ~t~~~f~~---~~~~~~~~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~- 438 (512)
T 3fce_A 365 LTEKAFTM---IDGERAYKTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLR-ACSYVEGAVIVPIKKGEKY- 438 (512)
T ss_dssp HHHHHEEE---ETTEEEEEEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHH-HSTTEEEEEEEEEEETTEE-
T ss_pred hhhhcccc---CCCCEEEeCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEEecCCCc-
Confidence 88888854 236789999999999 79999999999999999999999999999995 9999999999999887766
Q ss_pred eEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcc
Q 004825 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 724 (728)
+.++|+|++.+ +. ..+..++.+.|+++++++||.||+|..|+++++||+|+||||||++|++.+.+..+
T Consensus 439 ~~~~a~vv~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~L~~~~~~~~~ 507 (512)
T 3fce_A 439 DYLLAVVVPGE-HS-FEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKKLLSEVTALEH 507 (512)
T ss_dssp EEEEEEEEECS-CC-CSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHC---
T ss_pred eEEEEEEecCC-cc-ccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHHHHhhhhhccc
Confidence 88999999876 43 34556677889999999999999999999999999999999999999999988554
No 10
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.7e-79 Score=688.40 Aligned_cols=495 Identities=17% Similarity=0.146 Sum_probs=424.8
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
.++|.++++++|+++|+++.++ ++||+||+++++++|++|++. |+++|++|+|+++|++++++++|||+++
T Consensus 4 ~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA~~~~ 75 (511)
T 3e7w_A 4 LHAIQTHAETYPQTDAFRSQGQ--------SLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLGSVKA 75 (511)
T ss_dssp HHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCeEEEcCCc--------eeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHHHHHh
Confidence 3567888999999999999877 999999999999999999985 8899999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|++++|++|.++.+++.+++++++++++|+++...... . . .......+.++..
T Consensus 76 G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~--~---------~----------------~~~~~~~~~~~~~ 128 (511)
T 3e7w_A 76 GHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA--V---------G----------------QQIQTVSAEELLE 128 (511)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC--C---------C----------------CSSCEEEHHHHHT
T ss_pred CCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh--c---------c----------------cccceecHhhhhc
Confidence 99999999999999999999999999999976432100 0 0 0011223334333
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHH
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYAS 418 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~ 418 (728)
.... .........+++++||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.++.+
T Consensus 129 ~~~~---~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~ 205 (511)
T 3e7w_A 129 NEGG---SVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADFPVSGGKIFLNQAPFSFDLSVMDLYPC 205 (511)
T ss_dssp SCSC---CCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHSTTTTTCEEEECSCTTSTHHHHHHHHH
T ss_pred cccC---CccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhcCCCccceEEEeCCccHHHHHHHHHHH
Confidence 2211 1122334567999999999999999999999999999999999889999999999999999999999999999
Q ss_pred hhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 419 LLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 419 L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
|..|+++++.+.. .++..+++.|+++++|++.++|+++..++.........++++|.+++|||++++++.+++.+.++
T Consensus 206 l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~ 285 (511)
T 3e7w_A 206 LQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLERFP 285 (511)
T ss_dssp HHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHHCT
T ss_pred HhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCCCCHHHHHHHHHHCC
Confidence 9999999998643 36778999999999999999999999999876666677899999999999999999999999988
Q ss_pred CCCeEecccccccccccccCCcc----cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLL----QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~----~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
+++++|.||+||+++.++..... ......++|+|++|++++|+|++|+++|.|+. |||+|.+..+..+ |++++
T Consensus 286 ~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~~ 362 (511)
T 3e7w_A 286 KAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEK--GEIVIAGPSVSRG-YLGEP 362 (511)
T ss_dssp TCEEEECCCCGGGSSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCC-BTTCH
T ss_pred CcEEEeCcccchheeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCc--eEEEEecCccChh-hCCCc
Confidence 89999999999998765543221 12234679999999999999999999999997 9999977665442 46778
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.|++.|... +|.+||+|||+|++ +||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.+++..+
T Consensus 363 ~~t~~~f~~~---~g~~~~~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~~ 437 (511)
T 3e7w_A 363 ELTEKAFFSH---EGQWAYRTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVR-QSQYVRSAVVIPYQPNGTV 437 (511)
T ss_dssp HHHHHHEEES---SSSEEEEEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHH-HSTTEEEEEEEEECSSSSC
T ss_pred ccchhhhcCC---CCCEEEeCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEEcCCCCc
Confidence 8888888653 36678999999999 59999999999999999999999999999995 8999999999999887777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+.++|++++.+ +. ..+..++.+.|+++++++||.||+|..++++++||+|+||||||++|++.+.+..
T Consensus 438 -~~~~a~vv~~~-~~-~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~L~~~~~~~~ 505 (511)
T 3e7w_A 438 -EYLIAAIVPEE-HE-FEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKRIGEEVLVRS 505 (511)
T ss_dssp -CEEEEEEEECC-CC-CSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred -eEEEEEEEecc-cc-ccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHHHHhHHhhhc
Confidence 89999999887 44 3456677888999999999999999999999999999999999999999998743
No 11
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=4.5e-79 Score=701.55 Aligned_cols=498 Identities=17% Similarity=0.203 Sum_probs=413.3
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++ ||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+|+
T Consensus 29 l~~~~~~~a~--pd~~Av~~~~~--------~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~lA~l~a 98 (617)
T 3rg2_A 29 LTDILTRHAA--SDSIAVIDGER--------QLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKL 98 (617)
T ss_dssp TTHHHHTTTT--CCSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CCCeEEecCCc--------eEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHHHHHhc
Confidence 4567888876 99999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC-CcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA-PLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++|||++|.+|.+++.++++++++++++++......... ... ....... ...+.+... .....+.+.
T Consensus 99 G~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 168 (617)
T 3rg2_A 99 GVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGD-DFLNTFVTEHSSIRVVQLLND---------SGEHNLQDA 168 (617)
T ss_dssp TCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSS-HHHHHHHHHSTTCCEEEEETC---------CSTTBHHHH
T ss_pred CeEEccCCccccHHHHHHHHhhcCceEEEecccccccccH-HHHHHHhhcCCccceeeeccc---------ccccchhhh
Confidence 9999999999999999999999999999998754210000 111 1111111 122222111 111223333
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH--HH
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP--WL 414 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~--~~ 414 (728)
..... .........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|.+++ ++
T Consensus 169 ~~~~~----~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~ 244 (617)
T 3rg2_A 169 INHPA----EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNYAMSSPG 244 (617)
T ss_dssp HHSCC----SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSSH
T ss_pred hcccc----cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhcCCCCcceEEEeccchhhhhhhHHH
Confidence 32211 1223345568999999999999999999999999999999999889999999999999998877766 47
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC--CCCCCcCeeEEEeecCCCCHHHHHHHH
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI--DGYDWSSIRCFGSTGEASNVDEYLWLM 492 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~--~~~~l~~lr~i~~gGe~l~~~~~~~~~ 492 (728)
++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.... ....+++||.+++|||++++++.+++.
T Consensus 245 ~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~ 323 (617)
T 3rg2_A 245 SLGVFLAGGTVVLAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIP 323 (617)
T ss_dssp HHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCCCHHHHHHHH
T ss_pred HHHHHHcCCEEEEeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcCCHHHHHHHH
Confidence 9999999999999865 5677899999999999999999999998765322 233688999999999999999999998
Q ss_pred hccCCCCeEecccccccccccccCCcccccccccccCCC-CCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccC
Q 004825 493 GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 571 (728)
Q Consensus 493 ~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~ 571 (728)
+.+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++|+++|.|+. |||+|++..+..+ |+++
T Consensus 324 ~~~-~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~--GEl~i~G~~v~~G-Y~~~ 399 (617)
T 3rg2_A 324 AEI-GCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEV--GRLMTRGPYTFRG-YYKS 399 (617)
T ss_dssp HHT-CSEEEEEEEETTEEEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECSSSCSC-CTTC
T ss_pred HHh-CCcEEEEeccCcceeecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCc--eEEEecCccccch-hcCC
Confidence 776 48999999999998765544333333456899997 78899999999999999997 9999987776543 4678
Q ss_pred ccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004825 572 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651 (728)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~ 651 (728)
++.|++.|..++ ||+|||+|++++||.|+|+||+|||||++|+||+|+|||++|. .||+|.+|+|++.+++..
T Consensus 400 p~~t~~~f~~~~------~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~-~~p~V~~a~vv~~~~~~~ 472 (617)
T 3rg2_A 400 PQHNASAFDANG------FYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL-RHPAVIYAALVSMEDELM 472 (617)
T ss_dssp HHHHHHHBCTTS------CEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEEETTT
T ss_pred hhhhhhccCCCC------ceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHHHHHHHH-hCCCeeEEEEEeccCccc
Confidence 889999997654 9999999999999999999999999999999999999999995 999999999999988777
Q ss_pred CceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+ +.+++|++..+ ..+..++++ ++++ .||.||+|..|+++++||+|+||||||++|++++.+
T Consensus 473 ~-~~~~a~vv~~~----~~~~~~l~~----~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~~~~ 534 (617)
T 3rg2_A 473 G-EKSCAYLVVKE----PLRAVQVRR----FLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQWLAS 534 (617)
T ss_dssp E-EEEEEEEEESS----CCCHHHHHH----HHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHHHHH
T ss_pred C-eeEEEEEEeCC----CCCHHHHHH----HHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHHHhc
Confidence 7 89999999876 345566555 5666 699999999999999999999999999999998865
No 12
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=2.9e-79 Score=694.61 Aligned_cols=482 Identities=19% Similarity=0.205 Sum_probs=403.6
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 40 ~l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~ 111 (563)
T 1amu_A 40 TIHQLFEEQVSKRPNNVAIVCENE--------QLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGILAVLK 111 (563)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCeEEEeCCc--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 356778888999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|+++||++|.++.+++.+++++++++++|++..... ...... ..+..+.... ..
T Consensus 112 ~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~---------~~~~~~~~~~~~~~~~~~-----------~~--- 168 (563)
T 1amu_A 112 AGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVH---------LIHNIQFNGQVEIFEEDT-----------IK--- 168 (563)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH---------HHTTSCCCSEEEECCCST-----------TT---
T ss_pred hCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhh---------hhhhccccCceeeecchh-----------hc---
Confidence 9999999999999999999999999999999875321 111111 1111111100 00
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|+.+++.+
T Consensus 169 ---~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~~~ 241 (563)
T 1amu_A 169 ---I----REGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEM 241 (563)
T ss_dssp ---T----SCCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTSCCCTTCEEEECSCTTSTHHHHHH
T ss_pred ---c----ccCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhcCCCCCCEEEEeCCccHHHHHHHH
Confidence 0 000111234467899999999999999999999999999998888888999999999999999999999999
Q ss_pred HHHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 416 YASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
+.+|+.|+++++.+.. .++..+++.|+++++|++.++|+++..+... .+++||.+++|||++++++.+++.+
T Consensus 242 ~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------~~~~lr~~~~gG~~l~~~~~~~~~~ 315 (563)
T 1amu_A 242 FMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------RILSIQTLITAGSATSPSLVNKWKE 315 (563)
T ss_dssp HHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------TCCSCSEEEEESSCCCHHHHHHHTT
T ss_pred HHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------ccccccEEEEEEecCCHHHHHHHHh
Confidence 9999999999998642 4677899999999999999999999877432 3678999999999999999998876
Q ss_pred ccCCCCeEecccccccccccccCCcc--cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccC
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLL--QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLN 571 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~--~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~ 571 (728)
. ++++|.||+||++++++..... ......++|+|++|++++|+|++|+++|.|+. |||+|++..+.. .|+++
T Consensus 316 ~---~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~--GEl~v~g~~v~~-GY~~~ 389 (563)
T 1amu_A 316 K---VTYINAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEA--GELCIGGEGLAR-GYWKR 389 (563)
T ss_dssp T---SEEEEEECCGGGSSCSEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCC-EETTC
T ss_pred C---CeEEEEECcCHHhHhheeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCc--EEEEEechhhCh-hhCCC
Confidence 3 6899999999998755443221 12245689999999999999999999999986 999997665543 24678
Q ss_pred ccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004825 572 ANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651 (728)
Q Consensus 572 ~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~ 651 (728)
++.|++.|..+|+.+|.+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..
T Consensus 390 pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 468 (563)
T 1amu_A 390 PELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILL-KHMYISETAVSVHKDHQE 468 (563)
T ss_dssp HHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHT-TSTTEEEEEEEEEECTTS
T ss_pred chhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHH-hCCCcceEEEEEeecCCC
Confidence 8889999998888788899999999999999999999999999999999999999999995 999999999999988877
Q ss_pred CceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHH
Q 004825 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQL 719 (728)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~ 719 (728)
+ +.++||++... ..+.++++ ++++++||.||+|..|+++++||+|+||||||++|++..
T Consensus 469 ~-~~~~a~vv~~~----~~~~~~l~----~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 469 Q-PYLCAYFVSEK----HIPLEQLR----QFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp C-EEEEEEEEESS----CCCHHHHH----HHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSCCCC
T ss_pred C-eEEEEEEEeCC----CCCHHHHH----HHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcCCcc
Confidence 7 89999999765 34555554 468889999999999999999999999999999998754
No 13
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=3.7e-79 Score=691.27 Aligned_cols=500 Identities=18% Similarity=0.192 Sum_probs=411.7
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 26 tl~~~l~~~a~~~p~~~A~~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 97 (539)
T 1mdb_A 26 TFGDLLRDRAAKYGDRIAITCGNT--------HWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFALFR 97 (539)
T ss_dssp CHHHHHHHHHHHHTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEeCCC--------cccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHH
Confidence 355678888999999999998776 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC-cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP-LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|+++||++|.++.+++.+++++++++++|+++..... ...... .+....+. ..+++..... .+.+
T Consensus 98 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 165 (539)
T 1mdb_A 98 LGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGF-DYRSLARQVQSKLPTLKNIIVAGEAE-----------EFLP 165 (539)
T ss_dssp HTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTE-EHHHHHHHHHHHCTTCCCEEEESCCT-----------TSEE
T ss_pred cCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccc-cHHHHHHHHHhcCCCccEEEEcCCcc-----------chhh
Confidence 99999999999999999999999999999998753210 000011 11122221 1122211100 0111
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH--
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-- 413 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-- 413 (728)
+.... ..........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++.
T Consensus 166 ~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 241 (539)
T 1mdb_A 166 LEDLH----TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSP 241 (539)
T ss_dssp GGGCC----CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECSCTTSHHHHHSS
T ss_pred hhhcc----ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhhCCCCCCEEEEeecccccchhhHH
Confidence 11100 011122345679999999999999999999999999999998888888999999999999999999985
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+
T Consensus 242 ~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~~~~ 320 (539)
T 1mdb_A 242 GVLGVLYAGGRVVLSPS-PSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKA 320 (539)
T ss_dssp HHHHHHHTTCEEEECSS-SSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSCCCHHHHTTHHH
T ss_pred HHHHHHHhCCEEEECCC-CCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCCCCHHHHHHHHH
Confidence 69999999999999864 57889999999999999999999999998764444567899999999999999999999887
Q ss_pred ccCCCCeEecccccccccccccCCcccccccccccCCCCC-ceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMG-CKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~-~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
.+ +++++|.||+||+++.++...........++|+|+++ .+++|+|++|+++|.|+. |||+|++..+..+ |++++
T Consensus 321 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~~ 396 (539)
T 1mdb_A 321 VF-GCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGET--GHLLTRGPYTIRG-YYKAE 396 (539)
T ss_dssp HT-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSS-CTTCH
T ss_pred Hh-CCcEEEEEcCCCCcccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCc--ceEEeeCcccchh-hcCCh
Confidence 77 4899999999997654433222122345789999976 489999999999999987 9999977765543 46778
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.|++.|..+. ||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++..|
T Consensus 397 ~~t~~~f~~~g------~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g 469 (539)
T 1mdb_A 397 EHNAASFTEDG------FYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL-AHPAVHDAAMVSMPDQFLG 469 (539)
T ss_dssp HHHHHHBCTTS------CEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE
T ss_pred hhhhhhccCCC------CeecCceEEECCCCcEEEeccccceEEECCEEECHHHHHHHHH-hCCCcceEEEEeccccccC
Confidence 88888887532 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhh-CCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKK-LNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~-Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
+.++|||++.+ . ..+.+++++ +++++ ||.||+|..|+++++||+|+|||+||++|++++.+
T Consensus 470 -~~~~a~vv~~~-~--~~~~~~l~~----~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 531 (539)
T 1mdb_A 470 -ERSCVFIIPRD-E--APKAAELKA----FLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISE 531 (539)
T ss_dssp -EEEEEEEEESS-S--CCCHHHHHH----HHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHHHHH
T ss_pred -ceEEEEEEECC-C--CCCHHHHHH----HHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHHHHH
Confidence 89999999874 2 245555554 57776 99999999999999999999999999999999876
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=5.3e-78 Score=685.29 Aligned_cols=521 Identities=21% Similarity=0.263 Sum_probs=426.2
Q ss_pred CCCCCCCCcchHhhhhcccccCC-----CCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHc-CCCCCCEEEE
Q 004825 167 GGQWLPGAFVNPAKNCLSVNSKR-----SLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNAL-GLDKGSAIAI 240 (728)
Q Consensus 167 ~~~w~~~~~~~~~~~~l~~~~~~-----~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~-Gv~~gd~Vai 240 (728)
+..|+.....|...++|.+++++ +||++|+++.+.. +..+++||+||+++++++|++|++. |+++||+|+|
T Consensus 28 ~~~~~~~~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~~~~---g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i 104 (570)
T 3c5e_A 28 WGHQEVPAKFNFASDVLDHWADMEKAGKRPPSPALWWVNGK---GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAV 104 (570)
T ss_dssp CCBCCCCSBCCHHHHTHHHHHHHHHTTSSCCCEEEEEECSS---SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEE
T ss_pred cccccCCccccHHHHHHHHHHhhccccCCCCceEEEEEcCC---CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEE
Confidence 45677777778888889888877 9999999985421 1224899999999999999999999 9999999999
Q ss_pred EcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcC
Q 004825 241 DMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPA 317 (728)
Q Consensus 241 ~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~ 317 (728)
+++|++++++++|||+++|+++||++|.++.+++.+++++++++++|+++.... .. .+....+. .++++..
T Consensus 105 ~~~n~~e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 178 (570)
T 3c5e_A 105 VLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQ------EVDTVASECPSLRIKLLVSE 178 (570)
T ss_dssp ECCSCHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHH------HHHHHGGGCTTCCEEEEESS
T ss_pred EcCCCHHHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHH------HHHHHhhcCCceeEEEEecc
Confidence 999999999999999999999999999999999999999999999999875321 11 11222221 2333322
Q ss_pred CCCCcccccCCCCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHH-HHHHHHHhcCCCC
Q 004825 318 KGSSFSMKLRDGDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFK-AAADAWCHMDIRK 396 (728)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~-~~~~~~~~~~~~~ 396 (728)
.. ..+...+.++...... ........++++|||+|||||||.||||+++|+.+.+ ...+. ..+++++
T Consensus 179 ~~-------~~~~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~-~~~~~~~ 246 (570)
T 3c5e_A 179 KS-------CDGWLNFKKLLNEAST----THHCVETGSQEASAIYFTSGTSGLPKMAEHSYSSLGLKAKMDA-GWTGLQA 246 (570)
T ss_dssp SC-------CTTSEEHHHHHHHSCS----CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHT-TTTSCCT
T ss_pred cC-------ccccccHHHHhhcccc----cccccCCCCCCcEEEEECCCCCCCCCEEEechHHHHhhhhhhh-hhcCCCC
Confidence 11 1123346665543321 1222345679999999999999999999999994332 33333 6678999
Q ss_pred CCEEEecCCcchhhhHH-HHHHHhhhCcEEEEeCC-CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCee
Q 004825 397 ADIVAWPTNLGWMMGPW-LVYASLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIR 474 (728)
Q Consensus 397 ~d~~l~~~~~~~~~~~~-~~~~~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr 474 (728)
+|++++.+|++|+.+++ .++.+|..|+++++.+. ..++..+++.|+++++|++.++|++++.|++.. ....++++||
T Consensus 247 ~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~~~~~~lr 325 (570)
T 3c5e_A 247 SDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD-LSSYKFPHLQ 325 (570)
T ss_dssp TCEEEECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC-TTTCCCTTCC
T ss_pred CceEEEcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc-ccccccccce
Confidence 99999999999999986 68899999999999864 457889999999999999999999999998763 3345688999
Q ss_pred EEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCcee
Q 004825 475 CFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMG 554 (728)
Q Consensus 475 ~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giG 554 (728)
.+++|||++++++.+++.+.+ +++++|.||+||+++.++... ......+++|+|++|++++|+|++|+++|.|+. |
T Consensus 326 ~i~~gGe~l~~~~~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~--G 401 (570)
T 3c5e_A 326 NCVTVGESLLPETLENWRAQT-GLDIRESYGQTETGLTCMVSK-TMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTE--G 401 (570)
T ss_dssp EEEEESSCCCHHHHHHHHHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCCEEEECTTSCBCCTTCC--E
T ss_pred EEEEcCCcCCHHHHHHHHHHh-CCchhhccchhhcccceecCc-ccccCCCcccccCCCceEEEECCCCCCCCCCCC--C
Confidence 999999999999999998877 488999999999986554432 223456789999999999999999999999987 9
Q ss_pred EEEEe-----ccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHH
Q 004825 555 ELALS-----PLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIER 629 (728)
Q Consensus 555 El~v~-----~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~ 629 (728)
||+|. +..+.. .|+++++.|++.|.. +||+|||+|++++||+|+|+||+|||||++|+||+|.|||+
T Consensus 402 El~v~~~~~~g~~v~~-GY~~~~~~t~~~f~~-------~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~ 473 (570)
T 3c5e_A 402 DIGIRVKPIRPIGIFS-GYVDNPDKTAANIRG-------DFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVEN 473 (570)
T ss_dssp EEEEECSSBCCTTCCC-EETTCHHHHHHTEET-------TEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHH
T ss_pred eeEEeccCCCCchhhc-cccCChhHhhhhhcC-------CccccceeEEEcCCceEEEEecCCCEEEECCEEECHHHHHH
Confidence 99996 433332 246677888888852 29999999999999999999999999999999999999999
Q ss_pred HHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCc
Q 004825 630 ICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNK 709 (728)
Q Consensus 630 ~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GK 709 (728)
+|. .||+|.+|+|++.+++..| +.++|||++.+ +....+.+.+.+.|+++|+++||.||+|..|+++++||+|+|||
T Consensus 474 ~l~-~~p~V~~a~Vv~~~~~~~g-~~~~a~vv~~~-~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GK 550 (570)
T 3c5e_A 474 ALM-EHPAVVETAVISSPDPVRG-EVVKAFVVLAS-QFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGK 550 (570)
T ss_dssp HHH-TSTTEEEEEEEEEEETTTE-EEEEEEEEECG-GGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCC
T ss_pred HHH-hCCCcceEEEEeeeCCCCC-eEEEEEEEECC-cccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcC
Confidence 995 9999999999999888777 88999999876 32123445677888899999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhcc
Q 004825 710 VMRRVLRKQLAQLDQ 724 (728)
Q Consensus 710 vdR~~L~~~~~~~~~ 724 (728)
++|++|++.+...+.
T Consensus 551 i~R~~L~~~~~~~s~ 565 (570)
T 3c5e_A 551 IQRAKLRDKEWKMSG 565 (570)
T ss_dssp BCHHHHHHHHTC---
T ss_pred CcHHHHHHHHHhhhh
Confidence 999999999876543
No 15
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=6.2e-79 Score=685.87 Aligned_cols=495 Identities=22% Similarity=0.208 Sum_probs=409.3
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
....++|.++++++|+++|+++.+.. .++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 16 ~~l~~~l~~~a~~~p~~~A~~~~~~~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 89 (517)
T 3r44_A 16 KNIGWMLRQRATVSPRLQAYVEPSTD------VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCCLFYGAA 89 (517)
T ss_dssp GCHHHHHHHHHHHSTTSEEEEEGGGT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCCCeEEEeCCcC------ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHHHHHHHH
Confidence 34567788899999999999987542 489999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCcCH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDISW 333 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~ 333 (728)
++|+++||++|.++.+++.+++++++++++|++..... .. .+...... ..+.+ .....+
T Consensus 90 ~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~------------~~~~~~ 151 (517)
T 3r44_A 90 KLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP------VIDAIRAQADPPGTVTDW------------IGADSL 151 (517)
T ss_dssp HHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHH------HHHHHHHSSSCCTTCCEE------------EEHHHH
T ss_pred HhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHH------HHHHHHhccCCccEEEEc------------cCcccH
Confidence 99999999999999999999999999999999875321 11 11111100 00000 001122
Q ss_pred HHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH
Q 004825 334 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 413 (728)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
.+..... ....+.....++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++.+|++|++++.
T Consensus 152 ~~~~~~~----~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~~~~ 227 (517)
T 3r44_A 152 AERLRSA----AADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALT 227 (517)
T ss_dssp HHHHHHC----CCCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHSCCCTTCEEEECSCTTSHHHHH
T ss_pred HHHhhcc----CcCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHH
Confidence 2332221 122234456789999999999999999999999999999999988899999999999999999999998
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.+++.|+++++.+. .++..+++.|+++++|++.++|++++.|.+.......++++||.+++|||++++++.+++.+
T Consensus 228 ~~~~~~~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~ 306 (517)
T 3r44_A 228 TVIFSAMRGVTLISMPQ-FDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAPMPEALIKIYAA 306 (517)
T ss_dssp HHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSCCCHHHHHHHHH
T ss_pred HHHHHHhcCeEEEEeCC-CCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCCCCHHHHHHHHh
Confidence 76666669999999864 67889999999999999999999999998765444566889999999999999999998887
Q ss_pred ccCCCCeEecccccccccccccCCccc-ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQ-AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~-~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
. +++++|.||+||+++..+...... ....+++|+|+++++++|+|++|++++.| . |||+|++..+..+ |++++
T Consensus 307 ~--~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~--GEl~v~g~~v~~G-Y~~~p 380 (517)
T 3r44_A 307 K--NIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-E--GEVVIKSDILLKE-YWNRP 380 (517)
T ss_dssp T--TCEEEEEEECGGGTTCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-E--EEEEEEETTSCSE-ETTCH
T ss_pred c--CCcEEEeecccccccceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-C--eEEEEeCcchhhh-hCCCh
Confidence 5 589999999999987655433322 34567899999999999999999999988 4 9999977665543 46788
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.|++.|.. | ||+|||+|++++||+|+|+||.|||||++|+||+|.|||++|. .||+|.+|+|++.+++..|
T Consensus 381 ~~t~~~f~~-----g--~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~Vv~~~~~~~g 452 (517)
T 3r44_A 381 EATRDAFDN-----G--WFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVII-GVPGVSEVAVIGLPDEKWG 452 (517)
T ss_dssp HHHHHTEET-----T--EEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE
T ss_pred hhhHhhhcC-----C--CEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHHHHHHHH-hCCCEeEEEEEeccccccC
Confidence 889888842 3 9999999999999999999999999999999999999999995 9999999999999988777
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+.+++++ ..+ +. ..+.+++++ +++++||.||+|..|+++++||+|+||||||++|++++.+.
T Consensus 453 -~~~~a~v-~~~-~~-~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 453 -EIAAAIV-VAD-QN-EVSEQQIVE----YCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp -EEEEEEE-EEC-TT-TCCHHHHHH----HHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHHGGG
T ss_pred -ceEEEEE-ECC-CC-CCCHHHHHH----HHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHHHhh
Confidence 7788887 444 33 355555554 68889999999999999999999999999999999999763
No 16
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=1.1e-78 Score=685.82 Aligned_cols=499 Identities=16% Similarity=0.130 Sum_probs=410.8
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..+.|.++++++|+++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 6 l~~~l~~~a~~~p~~~a~~~~~~--------~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA~~~~ 77 (521)
T 3l8c_A 6 MIDSIEQFAQTQADFPVYDCLGE--------RRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVALTKS 77 (521)
T ss_dssp HHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCCcceecCCC--------eecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHHh
Confidence 44668888999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLE 338 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 338 (728)
|+++||++|.++.+++.+++++++++++|+++......... ....+.++..
T Consensus 78 G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~~~~-----------------------------~~~~~~~~~~ 128 (521)
T 3l8c_A 78 GHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGI-----------------------------SLVSLSEIES 128 (521)
T ss_dssp TCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCCTTS-----------------------------EEEEHHHHHH
T ss_pred CCEEEecCccccHHHHHHHHHhCCCCEEEecCccccccccC-----------------------------cccchhhhhh
Confidence 99999999999999999999999999999987542111000 0112223222
Q ss_pred hhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh--cCCCCCCEEEecCCcchhhhHHHHH
Q 004825 339 RVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--MDIRKADIVAWPTNLGWMMGPWLVY 416 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~ 416 (728)
.... ...........+++++||+|||||||.||||+++|+++++.+.+.... +++.+++++++..|++|+.+.+.++
T Consensus 129 ~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 207 (521)
T 3l8c_A 129 AKLA-EMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDAAFDVPKQPQMLAQPPYSFDLSVMYWA 207 (521)
T ss_dssp HHHH-TCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCTTTCCCSSCEEECCSCTTSGGGHHHHH
T ss_pred cccc-cCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhccccCCCCCCeEEecCCccHHHHHHHHH
Confidence 2111 111122345678999999999999999999999999999988877665 7788999999999999999999999
Q ss_pred HHhhhCcEEEEeCCC--CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhc
Q 004825 417 ASLLNGASIALYNGS--PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGR 494 (728)
Q Consensus 417 ~~L~~G~~lvl~~~~--~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~ 494 (728)
.+|..|+++++.+.. .++..+++.|.++++|++.++|+++..++........++++||.+++|||++++++.+++.+.
T Consensus 208 ~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gG~~l~~~~~~~~~~~ 287 (521)
T 3l8c_A 208 PTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFYFDGEELTVSTARKLFER 287 (521)
T ss_dssp HHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSCCCHHHHHHHHHH
T ss_pred HHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhccccccCccceEEEEecccCCHHHHHHHHHH
Confidence 999999999998643 367789999999999999999999999988766666778999999999999999999999999
Q ss_pred cCCCCeEecccccccccccccCCccc----ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCcccc
Q 004825 495 ALYKPVIEYCGGTEIGGGFITGSLLQ----AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLL 570 (728)
Q Consensus 495 ~~~~~l~n~YG~TE~~~~~~~~~~~~----~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~ 570 (728)
+++++++|.||+||+++.++...... .....++|+|++|++++|+|++|+++|.|+. |||+|.++.+..+ |++
T Consensus 288 ~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~ 364 (521)
T 3l8c_A 288 FPSAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQ--GEIIVTGPAVSKG-YLN 364 (521)
T ss_dssp CTTCEEEEEECCGGGSSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCC--EEEEEESTTSCSC-BTT
T ss_pred CCCceEEeCcCccHHhhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCc--eEEEecccccChh-hcC
Confidence 88899999999999987655433211 2235689999999999999999999999987 9999977665543 467
Q ss_pred CccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCC
Q 004825 571 NANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPD 650 (728)
Q Consensus 571 ~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~ 650 (728)
+++.|++.|... ++.+||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++.
T Consensus 365 ~~~~t~~~f~~~---~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~ 440 (521)
T 3l8c_A 365 NPEKTAEAFFTF---KGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLN-QSPMVASAVAVPRYNKE 440 (521)
T ss_dssp CHHHHHHHEEEE---TTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHH-TSTTEEEEEEECCCSSS
T ss_pred CchHhhccCcCC---CCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHH-cCCCcceEEEEEeecCC
Confidence 888888888643 36679999999999999999999999999999999999999999995 99999999999887655
Q ss_pred CCceEEEEEEEecCCCCC--CCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 651 GGPEQLTIVVVFKDSNYT--PPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 651 ~g~~~l~a~vv~~~~~~~--~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
.+.+.++|+|++++ +.. .....++.+.|+++++++||.||+|..|+++++||+|+||||||++|++++.+..
T Consensus 441 ~~~~~~~a~vv~~~-~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 441 HKVQNLLAYIVVKD-GVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp CC---CEEEEEECT-TSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBCHHHHHHHTC---
T ss_pred CCceEEEEEEEecC-ccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCccHHHHhhhhhcCC
Confidence 43378999999987 431 1123456778888999999999999999999999999999999999999988743
No 17
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=7.6e-80 Score=701.68 Aligned_cols=487 Identities=20% Similarity=0.224 Sum_probs=322.5
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||++
T Consensus 76 ~l~~~l~~~a~~~pd~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~ 147 (570)
T 4gr5_A 76 CVHELFEAQAARAPDAVALLHEAD--------ELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVALLAVLK 147 (570)
T ss_dssp CHHHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCeEEECCCC--------cEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHHHHH
Confidence 466788999999999999999877 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFL 337 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 337 (728)
+|+++||++|.++.+++.+++++++++++|++....... .....++..... .
T Consensus 148 ~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~----------------~ 199 (570)
T 4gr5_A 148 AGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL------------TGTTTLYVEDEA----------------A 199 (570)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS------------CSSEEEECCC-------------------
T ss_pred HCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc------------cCCcceeeeccc----------------c
Confidence 999999999999999999999999999999987542111 011111100000 0
Q ss_pred HhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHH
Q 004825 338 ERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYA 417 (728)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 417 (728)
.. ...........++++|||+|||||||.||||+++|+++.+.+.+ ...++++++|++++++|++|+.+.+.++.
T Consensus 200 ~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~-~~~~~~~~~d~~l~~~p~~~~~~~~~~~~ 274 (570)
T 4gr5_A 200 SD----APAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG-QDYAGFGPDEVFLQCSPVSWDAFGLELFG 274 (570)
T ss_dssp --------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS-CCSSCCSTTCEEEECSCTTSSTHHHHHHH
T ss_pred cc----ccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh-hhhcCCCCCCEEEEecCccHHHHHHHHHH
Confidence 00 01112234457899999999999999999999999999876654 35568899999999999999999899999
Q ss_pred HhhhCcEEEEeCC-CCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccC
Q 004825 418 SLLNGASIALYNG-SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRAL 496 (728)
Q Consensus 418 ~L~~G~~lvl~~~-~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~ 496 (728)
+|+.|+++++.+. ..++..+++.|+++++|++.++|+++..|++... ..+++||.+++|||+++++..+++.+.++
T Consensus 275 ~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~---~~~~~lr~~~~gG~~l~~~~~~~~~~~~~ 351 (570)
T 4gr5_A 275 ALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVP---EAFEGVRYAITGGEPASVPHVAKARRDHP 351 (570)
T ss_dssp HHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCG---GGGTTCSEEEEESSCCCHHHHHHHHHHCT
T ss_pred HHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhch---hhCCCceEEEEecccCCHHHHHHHHHhCC
Confidence 9999999999864 3577789999999999999999999999987542 34789999999999999999999988888
Q ss_pred CCCeEecccccccccccccCCcc---cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcc
Q 004825 497 YKPVIEYCGGTEIGGGFITGSLL---QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNAN 573 (728)
Q Consensus 497 ~~~l~n~YG~TE~~~~~~~~~~~---~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~ 573 (728)
+++++|.||+||+++..+..... ......++|+|++|++++|+|++|+++|.|+. |||+|.+..+.. .|+++++
T Consensus 352 ~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~--GEl~v~g~~v~~-GY~~~~~ 428 (570)
T 4gr5_A 352 ALRLGNGYGPAESMGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGAL--GELYVAGAGLAH-GYVSRPA 428 (570)
T ss_dssp TCEEEEEECCGGGCSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCE--EEEEEEETTCCC-EETTCHH
T ss_pred CcEEEEeechhhheeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCc--EEEEEeecccch-hcCCCch
Confidence 89999999999998755433221 12334679999999999999999999999986 999997765543 2467788
Q ss_pred ccccccccCCC--CCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCC
Q 004825 574 HYDVYFSGMPS--RNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDG 651 (728)
Q Consensus 574 ~~~~~f~~~p~--~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~ 651 (728)
.|++.|..+|+ .+|.+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..
T Consensus 429 ~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~~~~~~ 507 (570)
T 4gr5_A 429 LTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLV-GHPAVRQAAVLAQDSRLG 507 (570)
T ss_dssp HHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC-----------------------------------------
T ss_pred hhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHh-cCCCcceEEEEEeeCCCC
Confidence 89999988775 356789999999999999999999999999999999999999999995 999999999999888777
Q ss_pred CceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHH
Q 004825 652 GPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQ 718 (728)
Q Consensus 652 g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~ 718 (728)
+ +.++|||+... +....+.+ .|+++|+++||.||+|..++++++||+|+||||+|++|++.
T Consensus 508 ~-~~~~a~vv~~~-~~~~~~~~----~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 508 D-KQLVAYVVAER-ADAPPDAA----ELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDRRALTGS 568 (570)
T ss_dssp -------------------------------------------------------------------
T ss_pred C-eEEEEEEEecC-CCCCcCHH----HHHHHHHhhCccccCCcEEEEcccCCCCCCcCcchHhhhcc
Confidence 6 88999999865 22123333 45557888999999999999999999999999999999875
No 18
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=6.3e-78 Score=676.16 Aligned_cols=487 Identities=20% Similarity=0.193 Sum_probs=400.1
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.+.+ +++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||+++
T Consensus 4 l~~~l~~~a~~~p~~~a~~~~~~~------~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 77 (504)
T 1t5h_X 4 VNEMLRRAATRAPDHCALAVPARG------LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILALHRL 77 (504)
T ss_dssp HHHHHHHHHHHCTTSEEEEETTTT------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEEcCCC------ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHh
Confidence 456788888999999999986211 38999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEE--ecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFT--QDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|++++|+||.++.+++.+++++++++++|+ +..... .+........ ++ .+.++
T Consensus 78 G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~-~~----------------~~~~~ 132 (504)
T 1t5h_X 78 GAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVAD--------AIFQSGSGAR-II----------------FLGDL 132 (504)
T ss_dssp TCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHH--------HHHHHCCCCE-EE----------------EGGGT
T ss_pred CcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhh--------hhhhccccce-eE----------------Eecch
Confidence 999999999999999999999999999999 543210 1101111111 11 01111
Q ss_pred HHhhhcc-ccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCC--CCCCEEEecCCcchhhhH-
Q 004825 337 LERVRKL-KENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDI--RKADIVAWPTNLGWMMGP- 412 (728)
Q Consensus 337 ~~~~~~~-~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~--~~~d~~l~~~~~~~~~~~- 412 (728)
....... ...........++++|||+|||||||.||||+++|+++.+.+.+....+++ +++|++++..|++|+.++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~ 212 (504)
T 1t5h_X 133 VRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFF 212 (504)
T ss_dssp EETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTTCCCSSTTCEEEECSCTTSHHHHT
T ss_pred hhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhhCCCCCCCceEEeecchhhcchHH
Confidence 1110000 001111134567999999999999999999999999999998888778888 889999999999999998
Q ss_pred HHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC--CCCCCCcCeeEEEeecCCCCHHHHHH
Q 004825 413 WLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC--IDGYDWSSIRCFGSTGEASNVDEYLW 490 (728)
Q Consensus 413 ~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~--~~~~~l~~lr~i~~gGe~l~~~~~~~ 490 (728)
..++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++... ....++++||.+++|||++++++.++
T Consensus 213 ~~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~l~~~~~~~ 291 (504)
T 1t5h_X 213 AVLVAALALDGTYVVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPDAVLET 291 (504)
T ss_dssp TTHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTTCCHHHHHH
T ss_pred HHHHHHHHcCceEEeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCcCCHHHHHH
Confidence 678999999999999875 678889999999999999999999999987542 23456899999999999999999999
Q ss_pred HHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCC---CccCCCCCceeEEEEe-ccccCCC
Q 004825 491 LMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDG---CPIPQNVPGMGELALS-PLIFGAS 566 (728)
Q Consensus 491 ~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g---~~vp~g~~giGEl~v~-~~~~~~~ 566 (728)
+.+.++ +.++|.||+||+++.+.. . ....+++|.|.++++++|+|+++ +++|.|+. |||+|. +..+..
T Consensus 292 ~~~~~~-~~~~~~YG~TE~~~~~~~--~--~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~--GEl~v~gg~~~~~- 363 (504)
T 1t5h_X 292 VHQHLP-GEKVNIYGTTEAMNSLYM--R--QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEE--GELIVAASDSAFV- 363 (504)
T ss_dssp HHHHCC-SEEEEEEEETTTEEEEEE--E--SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCC--EEEEEECCTTSCC-
T ss_pred HHHhcC-cceeeeeccccccccccc--c--CCCCCccccCCCCCceeEEeccCCCCCcCCCCCc--ceEEEeCCceeec-
Confidence 988875 789999999999433221 1 23457899999999999999988 99999987 999997 554432
Q ss_pred ccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEee
Q 004825 567 STLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGV 646 (728)
Q Consensus 567 ~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~ 646 (728)
.|+++++.|++.|.+ | ||+|||+|++++||+|+|+||.|||||++|+||+|.|||++|. .||+|.+|+|++.
T Consensus 364 GY~~~~~~t~~~f~~-----g--~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~Vv~~ 435 (504)
T 1t5h_X 364 GYLNQPQATAEKLQD-----G--WYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLG-TAPGVTEVVVIGL 435 (504)
T ss_dssp CBTTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEE
T ss_pred eecCCchhhhhhhcC-----C--ccccCcEEEECCCceEEEeCcccCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEe
Confidence 356778888888832 3 9999999999999999999999999999999999999999995 9999999999999
Q ss_pred cCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHH
Q 004825 647 PPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLA 720 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~ 720 (728)
+++..| +.++|||++++ +. ..+.+++++ ++++ +||.||+|..|+++++||+|+||||||++|+++++
T Consensus 436 ~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 436 ADQRWG-QSVTACVVPRL-GE-TLSADALDT----FCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp ECSSSS-EEEEEEEEECT-TC-CCCHHHHHH----HHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHHC
T ss_pred ecCCCC-cEEEEEEEecC-Cc-CcCHHHHHH----HHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHhc
Confidence 988877 89999999887 54 355555554 6777 89999999999999999999999999999999874
No 19
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.6e-79 Score=691.29 Aligned_cols=504 Identities=18% Similarity=0.192 Sum_probs=327.1
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.++ ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 32 l~~~l~~~a~~~p~~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA~~~~ 103 (544)
T 3o83_A 32 LTRILTVGVQSHPHSLAIICGER--------QLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFALLKA 103 (544)
T ss_dssp TTHHHHHHHHHCTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEcCCC--------ceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 45678888999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC--CcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|++++|++|.++.+++.+++++++++++|++....... ..... .+..... ..++.+... .....+.+
T Consensus 104 Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 173 (544)
T 3o83_A 104 GVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFS-NNQFIDSLHDVNLSPEIILMLNHQ---------ATDFGLLD 173 (544)
T ss_dssp TCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGS-SSHHHHHHHHTTCCCSEEEEETCC---------TTSEEHHH
T ss_pred CcEEecCCCCCCHHHHHHHHHhcCeeEEEEcccccccc-HHHHHHHHhhcccCcceEEEecCC---------ccccchhh
Confidence 99999999999999999999999999999987542100 00111 1111111 122222211 01222333
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH--
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW-- 413 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~-- 413 (728)
+...... .........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|.+++.
T Consensus 174 ~~~~~~~---~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~ 250 (544)
T 3o83_A 174 WIETPAE---TFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAPHNFMLSSP 250 (544)
T ss_dssp HHHSCCS---SCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHSS
T ss_pred hhhcccc---cccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHhCCCCCCeEEEecCcceEeecchH
Confidence 3332211 11122445689999999999999999999999999999999998899999999999999999888774
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.+|..|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+
T Consensus 251 ~~~~~l~~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~ 329 (544)
T 3o83_A 251 GALGVLHAGGCVVMAPN-PEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGASFPESLARQVPE 329 (544)
T ss_dssp HHHHHHHTTCEEEECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSCCCHHHHTHHHH
T ss_pred HHHHHHHcCCEEEECCC-CCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCCCCHHHHHHHHH
Confidence 68999999999999875 57788999999999999999999999998875555566889999999999999999999988
Q ss_pred ccCCCCeEecccccccccccccCCcccccccccccCCC-CCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPA-MGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNA 572 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~-~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~ 572 (728)
.+ +++++|.||+||+++.++...........++|+|+ ++++++|+|++|+++|.|+. |||+|+++.+..+ |++++
T Consensus 330 ~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~~ 405 (544)
T 3o83_A 330 VL-NCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEI--GMLATRGPYTFCG-YYQSP 405 (544)
T ss_dssp HH-CSEEEEEEECTTSCEEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCC--EEEEEECTTSCSC-CTTCH
T ss_pred Hh-CCcEEeeeccccccceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCe--eEEEEecCCcchh-hcCCh
Confidence 77 48999999999998655443333333457899996 89999999999999999987 9999977765442 46788
Q ss_pred cccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCC
Q 004825 573 NHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGG 652 (728)
Q Consensus 573 ~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g 652 (728)
+.|++.|..+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|++.+++..|
T Consensus 406 ~~t~~~f~~~------g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv~~~~~~~g 478 (544)
T 3o83_A 406 EHNSQVFDED------NYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL-LHPEVMHAALVAIVDEQFG 478 (544)
T ss_dssp HHHHHHBCTT------CCEEEEEEEEECTTSCEEEEEEEC----------------------------------------
T ss_pred hhhhhhCCCC------CCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHH-hCCCccEEEEEeccCCCCC
Confidence 8898888643 39999999999999999999999999999999999999999995 9999999999999988877
Q ss_pred ceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 653 PEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 653 ~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+.++|+|+..+ . ..+.++++ +++++ +||.||+|..|+++++||+|+||||||++|+++++..+
T Consensus 479 -~~~~a~vv~~~-~--~~~~~~l~----~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 542 (544)
T 3o83_A 479 -EKSCAFIVSRN-P--ELKAVVLR----RHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILNTST 542 (544)
T ss_dssp ------------------------------------------------------------------------
T ss_pred -ceEEEEEEeCC-C--CCCHHHHH----HHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHhhcc
Confidence 88999999765 2 23344444 45666 79999999999999999999999999999999987643
No 20
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=6e-77 Score=674.21 Aligned_cols=501 Identities=18% Similarity=0.155 Sum_probs=414.0
Q ss_pred hhh-hcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 179 AKN-CLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 179 ~~~-~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
..+ +|.++++++ +++|+++.+.+ +++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 27 l~~~~l~~~~~~~-~~~A~~~~~~~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~la~~~ 99 (548)
T 2d1s_A 27 TQLRKYMERYAKL-GAIAFTNAVTG------VDYSYAEYLEKSCCLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLF 99 (548)
T ss_dssp HHHHHHHHHHHHH-TCEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHHHHH
T ss_pred HHHHHHHhhhccc-CCceEEEcCCC------CEeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCchhHHHHHHHHHh
Confidence 345 566677788 99999984211 2899999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC--CcEEEEcCCCCCcccccCCCCcCHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA--PLAIVIPAKGSSFSMKLRDGDISWL 334 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~ 334 (728)
+|++++|++|.++.+++.+++++++++++|+++.... .. ......+ ..++.++.... ..+...+.
T Consensus 100 ~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 167 (548)
T 2d1s_A 100 IGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLD------KVITVQKTVTTIKTIVILDSKVD------YRGYQCLD 167 (548)
T ss_dssp HTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHH------HHHHHHHHSTTCCEEEETTCSSC------BTTBCBHH
T ss_pred hCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHH------HHHHHhcCCCCCCEEEEeCCccc------ccccccHH
Confidence 9999999999999999999999999999999875421 11 2222222 22222221100 01223466
Q ss_pred HHHHhhhccccCccccccC------CCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh---cCCCCCCEEEecCC
Q 004825 335 DFLERVRKLKENEFAAVEQ------PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTN 405 (728)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~------~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~ 405 (728)
++....... ..+.... .++++|||+|||||||.||||+++|+++++.+.+.... ++++++|++++.+|
T Consensus 168 ~~~~~~~~~---~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p 244 (548)
T 2d1s_A 168 TFIKRNTPP---GFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVP 244 (548)
T ss_dssp HHHHHTSCT---TCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred HHHhcCccc---cCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEecc
Confidence 665543210 0111122 23899999999999999999999999999988877665 68899999999999
Q ss_pred cchhhhHHH-HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCC
Q 004825 406 LGWMMGPWL-VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 484 (728)
Q Consensus 406 ~~~~~~~~~-~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~ 484 (728)
++|+++++. ++.++ .|+++++.+. .++..+++.|+++++|++.++|+++..|.+.......++++||.+++|||+++
T Consensus 245 ~~h~~g~~~~~~~~l-~G~~~v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~ 322 (548)
T 2d1s_A 245 FHHGFGMFTTLGYLI-CGFRVVMLTK-FDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLS 322 (548)
T ss_dssp TTSHHHHHHHHHHHH-TTCEEEECCC-CCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSCCC
T ss_pred HHHHHHHHHHHHHHh-cCcEEEEcCC-CCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCccCC
Confidence 999999865 66677 9999999864 67889999999999999999999999999876555567899999999999999
Q ss_pred HHHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEecccc
Q 004825 485 VDEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIF 563 (728)
Q Consensus 485 ~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~ 563 (728)
+++.+++.+.+++++++|.||+||+++.++... ......+++|+|+++++++|+| ++|+++|.|+. |||+|++..+
T Consensus 323 ~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~-~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v 399 (548)
T 2d1s_A 323 KEVGEAVARRFNLPGVRQGYGLTETTSAIIITP-EGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR--GEVCVKGPML 399 (548)
T ss_dssp HHHHHHHHHHTTCSCCEEEEECGGGSSEEEECC-TTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTS
T ss_pred HHHHHHHHHHcCCCceeeccccccccceeeecC-cccCCCCCCCccCCCceEEEEeCCcCccCCCCCC--eEEEECCHHH
Confidence 999999998887789999999999987655432 2234567999999999999999 68999999987 9999977665
Q ss_pred CCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEE
Q 004825 564 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 643 (728)
Q Consensus 564 ~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~V 643 (728)
..+ |+++++.|++.|..+ +||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|
T Consensus 400 ~~G-Y~~~~~~t~~~f~~~------g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V 471 (548)
T 2d1s_A 400 MKG-YVNNPEATKELIDEE------GWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLL-QHPSIFDAGV 471 (548)
T ss_dssp CSE-ETTCHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHH-TSTTEEEEEE
T ss_pred hhh-hcCChHHhhhcccCC------cEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHHHHHHHH-hCCCccEEEE
Confidence 432 466778888888532 39999999999999999999999999999999999999999995 9999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccc-eEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 644 IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVS-HVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~-~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
++.+++..| +.++|+|++.+ +. ..+.++++ ++++++|+.||+|. .|+++++||+|+|||++|++|++++.+
T Consensus 472 ~~~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~----~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 472 AGVPDPVAG-ELPGAVVVLES-GK-NMTEKEVM----DYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp EEEEETTTE-EEEEEEEEECT-TC-CCCHHHHH----HHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHHHS
T ss_pred EEEEcCCCC-eeeEEEEEEcC-CC-CCCHHHHH----HHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHHhh
Confidence 999988777 88999999876 54 35555554 46888999999999 999999999999999999999999876
No 21
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=2e-78 Score=731.78 Aligned_cols=562 Identities=17% Similarity=0.157 Sum_probs=335.6
Q ss_pred CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcCcceecCCceeecCCCCCCCCCCCCCCCCCCCCcchHhhhhcccccCCCC
Q 004825 112 YKDPISSFSNFQEFSVSNPEVYWKTVLNEMSTSFSVPPQCILRENPNGENHLSNPGGQWLPGAFVNPAKNCLSVNSKRSL 191 (728)
Q Consensus 112 y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~l~~~~~~~p 191 (728)
|++ ++.+..++++|..++..+++.+......+.....-... ..... -.......++|.++++++|
T Consensus 11 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~p~~~tl~~~l~~~a~~~p 75 (979)
T 3tsy_A 11 SSG-----LVPRGSHMARMAPQEQAVSQVMEKQSNNNNSDVIFRSK---------LPDIY-IPNHLSLHDYIFQNISEFA 75 (979)
T ss_dssp ---------------------------------------CCCBCCS---------SCCCC-CCTTSCHHHHHTTTGGGTT
T ss_pred ccC-----cccCcchhhhhhhHHHHHHHhhhhcccCCCCCceeecC---------CCCCC-CCCCCCHHHHHHHHHHhCC
Confidence 666 99999999999999999988764322222211111111 01110 0112345678899999999
Q ss_pred CCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCH
Q 004825 192 DDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFAS 271 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~ 271 (728)
|++|+++...+ +++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++|+++||++|.+|.
T Consensus 76 d~~Al~~~~~~------~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~ 149 (979)
T 3tsy_A 76 TKPCLINGPTG------HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149 (979)
T ss_dssp TSEEEEETTTC------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCH
T ss_pred CCeEEEECCCC------cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCH
Confidence 99999986321 389999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHhhhccccCccccc
Q 004825 272 LEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLERVRKLKENEFAAV 351 (728)
Q Consensus 272 ~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (728)
+++.++++++++++||++........ .+.......++.++.... .....+...+.++...... .....+..
T Consensus 150 ~~l~~~l~~~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 220 (979)
T 3tsy_A 150 AEIAKQAKASNTKLIITEARYVDKIK-----PLQNDDGVVIVCIDDNES---VPIPEGCLRFTELTQSTTE-ASEVIDSV 220 (979)
T ss_dssp HHHHHHHHHHTEEEEEECSTTTTTSH-----HHHHTSCCEEEECCCCTT---SCCCTTEEEGGGTSSCCSG-GGGGSCCS
T ss_pred HHHHHHHHHcCCeEEEEChHHHHHHH-----HHhhcCCceEEEeCCccc---ccCCcccccHHHHhhcccc-ccccCCcC
Confidence 99999999999999999986432111 222222223333322111 0111222333333222111 11122334
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHH----hcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWC----HMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 426 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~----~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (728)
...++++|||+|||||||.||||+++|+++++.+.+... .+++.++|++++..|++|++++ ..++.+|..|++++
T Consensus 221 ~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v 300 (979)
T 3tsy_A 221 EISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAIL 300 (979)
T ss_dssp CCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCSSSCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEE
T ss_pred CCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHhhcccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEE
Confidence 567899999999999999999999999999988776643 4568899999999999999998 45789999999999
Q ss_pred EeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccc
Q 004825 427 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGG 506 (728)
Q Consensus 427 l~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~ 506 (728)
+.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++.+.+++++++|.||+
T Consensus 301 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~ 379 (979)
T 3tsy_A 301 IMPK-FEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGM 379 (979)
T ss_dssp ECSS-CCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGGGTSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEEC
T ss_pred EeCC-CCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccccCCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeech
Confidence 9864 577889999999999999999999999998766666778999999999999999999999998888999999999
Q ss_pred cccccccccCCc----ccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCcccccccccc
Q 004825 507 TEIGGGFITGSL----LQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSG 581 (728)
Q Consensus 507 TE~~~~~~~~~~----~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~ 581 (728)
||++++++.... ......+++|+|++|++++|+|+ +|+++|.|++ |||+|++..+..+ |+++++.|++.|..
T Consensus 380 TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~i~g~~v~~G-Y~~~p~~t~~~f~~ 456 (979)
T 3tsy_A 380 TEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQP--GEICIRGHQIMKG-YLNNPAATAETIDK 456 (979)
T ss_dssp GGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCC--EEEEEESTTSCSE-ETTCHHHHHHHBCT
T ss_pred hhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCc--cEEEEECCCcccc-ccCChhhhhhhccC
Confidence 999875544321 12335678999999999999995 5999999997 9999977766543 46788889888864
Q ss_pred CCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEE
Q 004825 582 MPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVV 661 (728)
Q Consensus 582 ~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv 661 (728)
+ +||+|||+|++++||+|+|+||+|||||++|+||+|.|||++|. .||+|.+|+|++.+++..+ +.++|||+
T Consensus 457 ~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~-~~p~V~~~~Vv~~~~~~~g-~~~~a~vv 528 (979)
T 3tsy_A 457 D------GWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI-GHPDITDVAVVAMKEEAAG-EVPVAFVV 528 (979)
T ss_dssp T------SCEEEEEEEEECTTSCEEEEEESCC------------------------------------------------
T ss_pred C------CcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHH-hCCCcceEEEEEecccCCC-cEEEEEEE
Confidence 3 39999999999999999999999999999999999999999995 9999999999999888777 88999999
Q ss_pred ecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 662 FKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 662 ~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
..+ +. ..+.++ |+++++++||.||+|..++++++||+|+||||||++|++++.+
T Consensus 529 ~~~-~~-~~~~~~----l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~~ 582 (979)
T 3tsy_A 529 KSK-DS-ELSEDD----VKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLAN 582 (979)
T ss_dssp ------------------------------------------------------------
T ss_pred ECC-CC-CCCHHH----HHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHHh
Confidence 876 43 334444 4556888999999999999999999999999999999998875
No 22
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=4.3e-78 Score=678.61 Aligned_cols=497 Identities=17% Similarity=0.147 Sum_probs=317.1
Q ss_pred HhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVL 257 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lk 257 (728)
...++|.++++++||++|+++.++ ++||+||+++++++|++|++.|+++||+|+|+++|++++++++|||++
T Consensus 7 tl~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~ 78 (509)
T 3ivr_A 7 TLADVYRRNAALFPDRTAFMVDGV--------RLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIGAVAL 78 (509)
T ss_dssp CHHHHHHHHHHHSTTSEEEEETTE--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCceEEEECCc--------EEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHH
Confidence 345678889999999999999776 999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 258 AGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 258 aG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+|+++||++|.+|.+++.+++++++++++|++...... .......... ..+.+... ...+.+
T Consensus 79 ~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 142 (509)
T 3ivr_A 79 IGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI-----VAGVLPSLGGVKKAYAIGDG-----------SGPFAP 142 (509)
T ss_dssp TTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHH-----HHHHGGGCSSCCEEEESSCC-----------CSSCEE
T ss_pred hCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhh-----HHhhhcccCCceEEEEcCCC-----------CcChhh
Confidence 99999999999999999999999999999998754210 0111122221 12222111 111111
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLV 415 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~ 415 (728)
+.... ...........+++++||+|||||||.||||+++|+++++.+.+....++++++|++++.+|++|++++..+
T Consensus 143 ~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 219 (509)
T 3ivr_A 143 FKDLA---SDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLM 219 (509)
T ss_dssp GGGTC---CCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHH
T ss_pred Hhhcc---CCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhhCCCCCcEEEEeCCCcchhHHHHH
Confidence 11100 111223345678999999999999999999999999999999999899999999999999999999999887
Q ss_pred HHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhcc
Q 004825 416 YASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRA 495 (728)
Q Consensus 416 ~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~ 495 (728)
+.+++.|++.++.. ..++..+++.|+++++|++.++|+++..|++.. ...+++++|.++.+|++ +..+++.+.+
T Consensus 220 ~~~~~~~g~~~~~~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~--~~~~l~~lr~~~~~g~~---~~~~~~~~~~ 293 (509)
T 3ivr_A 220 LTLQQAGGASVIAA-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQA--APAQLASLRAVTGLDTP---ETIERFEATC 293 (509)
T ss_dssp HHHHHHTCEEEECS-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHC--CGGGGTTCCEEEEECCH---HHHHHHHHHC
T ss_pred HHHHHhCCcEEEec-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcc--cccchhhhheecccCCh---HHHHHHHHhc
Confidence 77777777777766 568889999999999999999999999998875 44567899999999997 7778888888
Q ss_pred CCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCcccc
Q 004825 496 LYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHY 575 (728)
Q Consensus 496 ~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~ 575 (728)
++++++|.||+||++++++..... ....++|+|++|++++|+|++|+++|.|+. |||+|++..+..+ |+++++.|
T Consensus 294 ~~~~~~~~YG~TE~~~~~~~~~~~--~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~--GEl~v~g~~~~~g-Y~~~~~~t 368 (509)
T 3ivr_A 294 PNATFWATFGQSETSGLSTFAPYR--DRPKSAGRPLFWRTVAVVDAEDRPLPPGEV--GEIVLRGPTVFKG-YWNNAAAT 368 (509)
T ss_dssp TTCEEEEEEEEGGGTEEEEEEEGG--GSTTSCCEECTTCEEEEECTTSCBCCTTCC--EEEEEESTTSCCE-ETTCHHHH
T ss_pred CCCeEEcccCccccccccccCccc--cCCCcccccCCCcEEEEECCCCCCCCCCCc--eEEEEecCCcccc-ccCCHHHh
Confidence 789999999999999765544332 223459999999999999999999999987 9999977665442 46678888
Q ss_pred ccccccCCCCCCceeEEeCceEEEecCceEEEEccc--CCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCc
Q 004825 576 DVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA--DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGP 653 (728)
Q Consensus 576 ~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~--d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~ 653 (728)
++.|.. +||+|||+|++++||+++|+||. ||+||++|+||+|.|||++|. .||+|.+|+|++.+++..+
T Consensus 369 ~~~f~~-------g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~-~~p~V~~a~vv~~~~~~~~- 439 (509)
T 3ivr_A 369 QHAFRN-------GWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALK-QHPAIADAVVIGVPDPQWS- 439 (509)
T ss_dssp HHHTGG-------GSEEEEEEEEECTTSCEEEEEEC--------------------------------------------
T ss_pred HHHhhc-------CCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHHHHHHHH-hCCCceeEEEEeccccccC-
Confidence 888852 39999999999999999999999 999999999999999999995 9999999999999888777
Q ss_pred eEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcccCC
Q 004825 654 EQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQNSK 727 (728)
Q Consensus 654 ~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~~~~ 727 (728)
+.++++++..+ +. ..+.++ |+++++++||.||+|..|+++++||+|+||||||++|++++++..++.|
T Consensus 440 ~~~~a~v~~~~-~~-~~~~~~----l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~~~~~~~~~ 507 (509)
T 3ivr_A 440 EAIKAVCVCKP-GE-SIAADA----LAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAHGQEGHHHH 507 (509)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cEEEEEEEeCC-CC-CCCHHH----HHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHHhhcccccC
Confidence 88999999876 43 344444 4556888999999999999999999999999999999999998665543
No 23
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=5.8e-78 Score=681.81 Aligned_cols=502 Identities=20% Similarity=0.211 Sum_probs=375.2
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 20 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~~~~ 95 (541)
T 1v25_A 20 LWDFLERAAALFGRKEVVSRLHT----GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGM 95 (541)
T ss_dssp THHHHHHHHHHSTTCEEEEECTT----SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCceEEEEecC----CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHHhc
Confidence 45678888899999999996321 11248999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCcCHHH
Q 004825 259 GYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 259 G~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
|+++||++|.++.+++.+++++++++++|++.... ... ......+. .+++++... ..+...+.+
T Consensus 96 Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~ 162 (541)
T 1v25_A 96 GAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLL------PLVEAIRGELKTVQHFVVMDEKA-------PEGYLAYEE 162 (541)
T ss_dssp TCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGH------HHHHHHGGGCSSCCEEEESSSCC-------CTTCEEHHH
T ss_pred CcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHH------HHHHHHHhhCCCccEEEEecCCC-------CcccccHHH
Confidence 99999999999999999999999999999987532 111 11122221 222222111 012233444
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHH--HHhcCCCCCCEEEecCCcchhhhHH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADA--WCHMDIRKADIVAWPTNLGWMMGPW 413 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~--~~~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
+..... ......+++++||+|||||||.||||+++|+++++..... ...++++++|++++.+|++|+.++.
T Consensus 163 ~~~~~~-------~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~~~~ 235 (541)
T 1v25_A 163 ALGEEA-------DPVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWC 235 (541)
T ss_dssp HCCSCC-------CCCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTTCCCTTCEEEECSCTTSHHHHT
T ss_pred HhhccC-------CcccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccccCCCCCEEEEeccchhhhHHH
Confidence 332111 1134567899999999999999999999999998776552 2456789999999999999999987
Q ss_pred HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHh
Q 004825 414 LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMG 493 (728)
Q Consensus 414 ~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~ 493 (728)
.++.+++.|+++++.+...++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++++.+++ +
T Consensus 236 ~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~~~~~~~-~ 314 (541)
T 1v25_A 236 LPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAAPRSLIARF-E 314 (541)
T ss_dssp HHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHTCCCSSCCEEEECSSCCCHHHHHHH-H
T ss_pred HHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccCCcchhccEEEECCCCCCHHHHHHH-H
Confidence 788999999999998765688899999999999999999999999987543334567899999999999999999988 5
Q ss_pred ccCCCCeEecccccccccccccCCccc----------ccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEecccc
Q 004825 494 RALYKPVIEYCGGTEIGGGFITGSLLQ----------AQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIF 563 (728)
Q Consensus 494 ~~~~~~l~n~YG~TE~~~~~~~~~~~~----------~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~ 563 (728)
.+ +++++|.||+||+++.++...... .....++|+|++|++++|+|++|+++|.+...+|||+|+++.+
T Consensus 315 ~~-g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v 393 (541)
T 1v25_A 315 RM-GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWI 393 (541)
T ss_dssp HT-TCEEEEEEECGGGSSEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTS
T ss_pred Hh-CCceeecccccccccceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcch
Confidence 55 589999999999987655443221 0235789999999999999999999985311149999977665
Q ss_pred CCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEE
Q 004825 564 GASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAA 643 (728)
Q Consensus 564 ~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~V 643 (728)
..+ |+++++.|++.|..+ | ||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .||+|.+|+|
T Consensus 394 ~~G-Y~~~p~~t~~~f~~~----g--~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~-~~p~V~~a~V 465 (541)
T 1v25_A 394 TGG-YYGNEEATRSALTPD----G--FFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALM-GHPKVKEAAV 465 (541)
T ss_dssp BSS-CBTCHHHHHTTBCTT----S--CEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC-----------CE
T ss_pred hcc-ccCChhhhhhhccCC----C--CeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHH-hCCCceEEEE
Confidence 543 467888898888643 3 9999999999999999999999999999999999999999995 8999999999
Q ss_pred EeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHh-hCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 644 IGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQK-KLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 644 v~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~-~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
++.+++..+ +.++|||++.. . ..+.++++ +++++ +||.||+|..|+++++||+|+|||++|++|++++.+.
T Consensus 466 v~~~~~~~~-~~~~a~vv~~~-~--~~~~~~l~----~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~~~ 537 (541)
T 1v25_A 466 VAIPHPKWQ-ERPLAVVVPRG-E--KPTPEELN----EHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYKNY 537 (541)
T ss_dssp EEEECSSSS-EEEEECC--------------------------CCCTTTSCSBC--------------CCTTHHHHSTTS
T ss_pred EEecCCCcC-ceEEEEEEECC-C--CCCHHHHH----HHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHHHh
Confidence 999998877 89999998753 1 23344444 45777 8999999999999999999999999999999988764
No 24
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=1.5e-76 Score=669.38 Aligned_cols=502 Identities=23% Similarity=0.243 Sum_probs=401.3
Q ss_pred CcchHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Q 004825 174 AFVNPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYL 253 (728)
Q Consensus 174 ~~~~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~l 253 (728)
...|...++|.++++ +|+++|+++.+. ++||+||+++++++|++|+++|+++||+|+|+++|++++++++|
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~~~--------~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~l 91 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDDTG--------STTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAFL 91 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeCCC--------CccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHH
Confidence 344677788998898 999999998765 99999999999999999999999999999999999999999999
Q ss_pred HHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcC---CcEEEEcCCCCCcccccCCC
Q 004825 254 AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQA---PLAIVIPAKGSSFSMKLRDG 329 (728)
Q Consensus 254 A~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~---~~~~~i~~~~~~~~~~~~~~ 329 (728)
||+++|+++||+++.++.+++.+++++++++++|++..... .. ....... ..++++...... ...
T Consensus 92 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 160 (529)
T 2v7b_A 92 GALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQ------NVTQALESAEHDGCQLIVSQPRESE-----PRL 160 (529)
T ss_dssp HHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHH------HHHHHHHCC---CCEEEEECC-----------C
T ss_pred HHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhh------HHHHHHhhccccCceEEEecccccc-----ccc
Confidence 99999999999999999999999999999999999875421 11 1111111 222222211100 001
Q ss_pred CcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHH-HHHHHHHHHhcCCCCCCEEEecCCcch
Q 004825 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATP-FKAAADAWCHMDIRKADIVAWPTNLGW 408 (728)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l-~~~~~~~~~~~~~~~~d~~l~~~~~~~ 408 (728)
...+.++...... ........+++++||+|||||||.||||+++|+++ .+...+....++++++|++++..|++|
T Consensus 161 ~~~~~~~~~~~~~----~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 236 (529)
T 2v7b_A 161 APLFEELIDAAAP----AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFF 236 (529)
T ss_dssp CCBHHHHHHTSCC----CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCCCCCTTCEEEESSCTTS
T ss_pred ccchhhhhccCCC----cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhccCCCCCcEEEEeecHHH
Confidence 2245555442211 12233456899999999999999999999999998 565555445578899999999999999
Q ss_pred hhhHH-HHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHH
Q 004825 409 MMGPW-LVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDE 487 (728)
Q Consensus 409 ~~~~~-~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~ 487 (728)
++++. .++.+|..|+++++.+...++..+++.|+++++|++.++|+++..+++..........++|.+++|||++++++
T Consensus 237 ~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~gGe~l~~~~ 316 (529)
T 2v7b_A 237 AYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNLPARADVAIRICTSAGEALPREI 316 (529)
T ss_dssp HHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTCCCGGGCCCCEEEECSSCCCHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCcccccccCCceEEEEEcCCCCCHHH
Confidence 99985 57789999999999865668889999999999999999999999998764433321248999999999999999
Q ss_pred HHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCc
Q 004825 488 YLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASS 567 (728)
Q Consensus 488 ~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~ 567 (728)
.+++.+.+ +++++|.||+||++..++..... ....+++|+|++|++++|+|++|+++|.|+. |||+|++..+..+
T Consensus 317 ~~~~~~~~-g~~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g- 391 (529)
T 2v7b_A 317 GERFTAHF-GCEILDGIGSTEMLHIFLSNRAG-AVEYGTTGRPVPGYEIELRDEAGHAVPDGEV--GDLYIKGPSAAVM- 391 (529)
T ss_dssp HHHHHHHH-SCCEEEEEECTTTSSEEEECCTT-CCCTTSCCEECTTCEEEEECTTSCBCCTTSC--EEEEEECTTCCCC-
T ss_pred HHHHHHHh-CCceeeeEchhhcCceeeccccC-CCccCCcccCCCCCEEEEECCCCCCCCCCCc--cEEEEecCCcccc-
Confidence 99998877 48999999999996554443322 2456789999999999999999999999987 9999977665433
Q ss_pred cccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeec
Q 004825 568 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 647 (728)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~ 647 (728)
|+++++.|++.|.. | ||+|||+|++++||+|+|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.
T Consensus 392 Y~~~~~~t~~~f~~-----~--~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~- 462 (529)
T 2v7b_A 392 YWNNREKSRATFLG-----E--WIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVEVEMVLV-QHDAVLEAAVVGV- 462 (529)
T ss_dssp BTTCHHHHHHHEET-----T--EEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHHHHHHHT-TSTTEEEEEEEEE-
T ss_pred cCCChHHHHHhhhc-----C--CcccCceEEECCCccEEEeCccCCeEEECCEEECHHHHHHHHH-hCCCcceEEEEEe-
Confidence 56677888888852 2 9999999999999999999999999999999999999999995 9999999999998
Q ss_pred CCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 648 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
++..+ +.++|+++..+ +. ...+.+.+.|+++++++||.||+|..|+++++||+|+|||++|++|++
T Consensus 463 ~~~~~-~~~~a~vv~~~-~~--~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 463 DHGGL-VKTRAFVVLKR-EF--APSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLRE 528 (529)
T ss_dssp EETTE-EEEEEEEEECT-TC--CCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC
T ss_pred cCCCc-eEEEEEEEecC-CC--CcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhh
Confidence 55555 78999999876 33 112335567888899999999999999999999999999999999986
No 25
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5.6e-78 Score=683.71 Aligned_cols=509 Identities=18% Similarity=0.163 Sum_probs=321.3
Q ss_pred HhhhhcccccCCCCCCeEEE---EeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIR---WCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLA 254 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~---~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA 254 (728)
...++|.++++++|+++|++ +... .+++||+||+++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 21 tl~~~l~~~a~~~p~~~a~~a~~~~~~------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 94 (550)
T 3rix_A 21 TAGEQLHKAMKRYALVPGTIAFTDAHI------EVNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLG 94 (550)
T ss_dssp CHHHHHHHHHHHHHTSTTCEEEEETTT------CCEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTTHHHHHH
T ss_pred CHHHHHHHHHHhCCCCceEEEeeecCC------CcEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccHHHHHHH
Confidence 45567888888999999876 3221 13899999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCC--cEEEEcCCCCCcccccCCCCc
Q 004825 255 IVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAP--LAIVIPAKGSSFSMKLRDGDI 331 (728)
Q Consensus 255 ~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~ 331 (728)
|+++|++++|++|.++.+++.+++++++++++|+++.... .. ......+. .+++++.... ..+..
T Consensus 95 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 162 (550)
T 3rix_A 95 ALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQ------KILNVQKKLPIIQKIIIMDSKTD------YQGFQ 162 (550)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHH------HHHHHHHHCTTCCEEEETTCSSC------BTTBC
T ss_pred HHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHH------HHHHHHhhCCCcceEEEEcCCcc------ccCcc
Confidence 9999999999999999999999999999999999875421 11 22222222 2222222111 12345
Q ss_pred CHHHHHHhhhcccc--Cccc-cccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh---cCCCCCCEEEecCC
Q 004825 332 SWLDFLERVRKLKE--NEFA-AVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH---MDIRKADIVAWPTN 405 (728)
Q Consensus 332 ~~~~~~~~~~~~~~--~~~~-~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~~ 405 (728)
.+.++......... .... .....++++|||+|||||||.||||+++|+++++.+.+.... +++.++|++++..|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 242 (550)
T 3rix_A 163 SMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVP 242 (550)
T ss_dssp BHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSC
T ss_pred cHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEech
Confidence 56666654432111 0111 122345789999999999999999999999999888776554 57889999999999
Q ss_pred cchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCH
Q 004825 406 LGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNV 485 (728)
Q Consensus 406 ~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~ 485 (728)
++|+++++.++.+|+.|+++++.+. .++..+++.|+++++|++.++|+++..|++.......++++||.+++|||++++
T Consensus 243 ~~~~~g~~~~~~~l~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~l~~ 321 (550)
T 3rix_A 243 FHHGFGMFTTLGYLICGFRVVLMYR-FEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAPLSK 321 (550)
T ss_dssp TTSHHHHHHHHHHHHHTCEEEECSS-CCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSCCCH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeCC-CCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCCCCH
Confidence 9999999989999999999999864 577889999999999999999999999998876666778999999999999999
Q ss_pred HHHHHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccC
Q 004825 486 DEYLWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFG 564 (728)
Q Consensus 486 ~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~ 564 (728)
++.+++.+.++...++|.||+||+++.++.... .....+++|+|+++++++|+| ++|+++|.|+. |||+|++..+.
T Consensus 322 ~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~ 398 (550)
T 3rix_A 322 EVGEAVAKRFHLPGIRQGYGLTETTSAILITPE-GDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR--GELCVRGPMIM 398 (550)
T ss_dssp HHHHHHHHHTTCSCCEEEEECGGGSSEEEECCT-TCCCTTEEEEECTTCEEEEECTTTCCBCCTTCC--EEEEEESTTSC
T ss_pred HHHHHHHHHcCCCccccccCcCccccceecCCC-CCCCCCCcccccCCcEEEEEeCCCCcCCCCCCC--eEEEEeCCCcc
Confidence 999999988875569999999999976655443 334568999999999999999 46999999987 99999777655
Q ss_pred CCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEE
Q 004825 565 ASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAI 644 (728)
Q Consensus 565 ~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv 644 (728)
.+ |+++++.|++.|..+ +||+|||+|++++||+++|+||+||+||++|+||+|.|||++|. .||+|.+|+|+
T Consensus 399 ~G-Y~~~~~~t~~~~~~~------g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~a~vv 470 (550)
T 3rix_A 399 SG-YVNNPEATNALIDKD------GWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELESILL-QHPNIFDAGVA 470 (550)
T ss_dssp SE-ETTCHHHHHHHBCTT------SCEEEEEEEEECTTCCEEEC------------------------------------
T ss_pred hh-hcCChhhhhhhcCCC------CCeecCcEEEEeCCceEEEEecchheeEECCEEECHHHHHHHHH-hCCCcceEEEE
Confidence 42 467788888888543 39999999999999999999999999999999999999999995 99999999999
Q ss_pred eecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCccc-ceEEECCCCCCCCCCchhHHHHHHHHHhhc
Q 004825 645 GVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKV-SHVVPLPSLPRTATNKVMRRVLRKQLAQLD 723 (728)
Q Consensus 645 ~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P-~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~ 723 (728)
+.+++..| +.++++|+..+ +. ..+.+++++ +++++|+.|++| ..++++++||+|+||||||++|++++.+..
T Consensus 471 ~~~~~~~g-~~~~a~vv~~~-~~-~~~~~~l~~----~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~~~~~ 543 (550)
T 3rix_A 471 GLPDDDAG-ELPAAVVVLEH-GK-TMTEKEIVD----YVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREILIKAK 543 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeecCCCC-ceEEEEEEecC-CC-CCCHHHHHH----HHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHHHhhc
Confidence 99988777 88999999876 44 344444444 677788888655 579999999999999999999999998733
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=4.4e-76 Score=660.35 Aligned_cols=474 Identities=22% Similarity=0.228 Sum_probs=375.2
Q ss_pred hHhhhhcccccCCCCC-CeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLD-DIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAI 255 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd-~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~ 255 (728)
....+.|.++++++|+ ++|+++.++ ++||+||+++++++|++|+ .|++|+|+++|++++++++|||
T Consensus 22 ~tl~~~l~~~a~~~p~d~~Al~~~~~--------~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~la~ 88 (505)
T 3nyq_A 22 SSLFPALSPAPTGAPADRPALRFGER--------SLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAVVAA 88 (505)
T ss_dssp --CCTTTSSCCCSGGGGSEEEEETTE--------EEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHHHHH
T ss_pred chhHHHHHHHHHhCCCCCeEEEECCe--------eeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHHHHH
Confidence 3455667888888887 999999887 9999999999999999875 3889999999999999999999
Q ss_pred HHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHH
Q 004825 256 VLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLD 335 (728)
Q Consensus 256 lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 335 (728)
+++|+++||+||.+|.+++.+++++++++++|++.... .. .... ....+.+...
T Consensus 89 ~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~-----~~--~~~~--~~~~~~~~~~----------------- 142 (505)
T 3nyq_A 89 LLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAE-----LP--PALG--ALERVDVDVR----------------- 142 (505)
T ss_dssp HHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCC-----CC--GGGT--TSEEEECCTT-----------------
T ss_pred HHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCccc-----cc--hhhc--cccccccccc-----------------
Confidence 99999999999999999999999999999999986421 00 0000 0011111100
Q ss_pred HHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhH-HH
Q 004825 336 FLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGP-WL 414 (728)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~-~~ 414 (728)
...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|..+. +.
T Consensus 143 --------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~ 214 (505)
T 3nyq_A 143 --------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLG 214 (505)
T ss_dssp --------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHHTCCTTCEEEECCCTTSHHHHTTT
T ss_pred --------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHhCCCCCcEEEEeccHHHHHHHHHH
Confidence 000112234567899999999999999999999999999999998888999999999999999999887 57
Q ss_pred HHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCC---CCCCCcCeeEEEeecCCCCHHHHHHH
Q 004825 415 VYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCI---DGYDWSSIRCFGSTGEASNVDEYLWL 491 (728)
Q Consensus 415 ~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~---~~~~l~~lr~i~~gGe~l~~~~~~~~ 491 (728)
++.+|..|+++++.+. .++..+++.+ ++++|+++++|+++..|++.... ....++++|.+++|||++++++.+++
T Consensus 215 ~~~~l~~G~~~~~~~~-~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~lr~i~~gg~~l~~~~~~~~ 292 (505)
T 3nyq_A 215 ILGPLRRGGSVRHLGR-FSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVHDHERI 292 (505)
T ss_dssp THHHHHHTCEEEECSS-CCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCHHHHHHHHHCSEEEECSSCCCHHHHHHH
T ss_pred HHHHHhcCCEEEECCC-CChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCchhhcccccceEEEECCCCCCHHHHHHH
Confidence 8999999999998754 5677888888 88999999999999999874221 12346789999999999999999998
Q ss_pred HhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCCCCccCC---CCCceeEEEEeccccCCCcc
Q 004825 492 MGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQ---NVPGMGELALSPLIFGASST 568 (728)
Q Consensus 492 ~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~---g~~giGEl~v~~~~~~~~~~ 568 (728)
.+.+ +++++|.||+||+++.++... .......++|+|++|++++|+|++|++++. |+. |||+|++..+..+ |
T Consensus 293 ~~~~-~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~--GEl~v~g~~v~~G-Y 367 (505)
T 3nyq_A 293 AAAT-GRRVIERYGMTETLMNTSVRA-DGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESV--GEIQVRGPNLFTE-Y 367 (505)
T ss_dssp HHHH-SCCCEEEEEETTTEEEEECCT-TSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCC--EEEEEESTTSCCE-E
T ss_pred HHhc-CCeeecccchhhcccccccCC-CCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCce--EEEEEecCchhhh-h
Confidence 8776 489999999999987654433 233456789999999999999999999886 765 9999977766543 4
Q ss_pred ccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEccc-CCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeec
Q 004825 569 LLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRA-DDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVP 647 (728)
Q Consensus 569 ~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~-d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~ 647 (728)
+++++.|++.|..++ ||+|||+|++++||.|+|+||+ |++||++|+||+|.|||++|. .||+|.+|+|++.+
T Consensus 368 ~~~~~~t~~~f~~~g------~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~-~~p~V~~a~Vv~~~ 440 (505)
T 3nyq_A 368 LNRPDATAAAFTEDG------FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL-EHPEVREAAVTGEP 440 (505)
T ss_dssp TTCHHHHHHTBCTTS------CEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHT-TSTTEEEEEEEEEE
T ss_pred CCChhHhhhhhcCCC------CCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHHHHHHHH-HCcCccEEEEEeeE
Confidence 677888999997543 9999999999999999999997 699999999999999999995 99999999999999
Q ss_pred CCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHH
Q 004825 648 PPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRK 717 (728)
Q Consensus 648 ~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~ 717 (728)
++..+ +.++|||++.+ +....+.+++ +++|+++||.||+|..|+++++||+|+||||||++|++
T Consensus 441 ~~~~g-~~l~a~vv~~~-~~~~~~~~~l----~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 441 DPDLG-ERIVAWIVPAD-PAAPPALGTL----ADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNR 504 (505)
T ss_dssp ETTTE-EEEEEEEEESS-TTSCCCHHHH----HHHHHHHTCGGGSCSEEEECSCCCC-------------
T ss_pred CCCCC-cEEEEEEEECC-CCCCCCHHHH----HHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhcc
Confidence 88877 89999999876 3213444554 45688899999999999999999999999999999986
No 27
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.2e-74 Score=649.64 Aligned_cols=494 Identities=18% Similarity=0.183 Sum_probs=376.2
Q ss_pred hhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcC
Q 004825 180 KNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAG 259 (728)
Q Consensus 180 ~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG 259 (728)
.++|.++++++||++|+++.++ ++||+||+++++++|++|++. +||+|+|+++|++++++++|||+++|
T Consensus 4 ~~~l~~~a~~~pd~~Al~~~~~--------~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~~~G 72 (501)
T 3ipl_A 4 DFWLYKQAQQNGHHIAITDGQE--------SYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACWLAN 72 (501)
T ss_dssp CCHHHHHHHHHTTSEEEECSSC--------EEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCceEEEeCCc--------EEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHHHcC
Confidence 3567788899999999999877 999999999999999999987 89999999999999999999999999
Q ss_pred cEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHHHHh
Q 004825 260 YIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDFLER 339 (728)
Q Consensus 260 ~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 339 (728)
++++|++|.++.+++.+++++++++++|++............. ..................................
T Consensus 73 av~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (501)
T 3ipl_A 73 IEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL---DDIEFAGRDITTNGLLDNTMGIQYDTSNETVVPK 149 (501)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET---TC--------------------------------
T ss_pred CEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc---ccceeeeeecccccccccccccccccchhhcccc
Confidence 9999999999999999999999999999988654322111000 0000000000000000000000000000001000
Q ss_pred hhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHh
Q 004825 340 VRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASL 419 (728)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L 419 (728)
. ...........++++|||+|||||||.||||+++|+++.+.+.+....++++++|++++..|++|++++..++.++
T Consensus 150 ~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l 226 (501)
T 3ipl_A 150 E---SPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAV 226 (501)
T ss_dssp C---CHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHTCCCTTCEEEECSCTTSHHHHHHHHHHH
T ss_pred C---CcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhhCCCccCEEEEeCcHHHHHHHHHHHHHH
Confidence 0 0011122345789999999999999999999999999999999988899999999999999999999998899999
Q ss_pred hhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCC
Q 004825 420 LNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKP 499 (728)
Q Consensus 420 ~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~ 499 (728)
+.|+++++.+. .++..+++.|+++++|++.++|++++.|++...... .+||.+++|||++++++.+++.+ + +++
T Consensus 227 ~~G~~~~~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~---~~lr~i~~gG~~l~~~~~~~~~~-~-~~~ 300 (501)
T 3ipl_A 227 IEGFTVRIVDK-FNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEP---YNLQKILLGGAKLSATMIETALQ-Y-NLP 300 (501)
T ss_dssp HHTCEEEECSS-CCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSC---TTCCEEEECSSCCCHHHHHHHHH-T-TCC
T ss_pred HcCceEEeCCC-CCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCc---CcccEEEEeCCCCCHHHHHHHHH-h-CCC
Confidence 99999999874 678899999999999999999999999988654332 28999999999999999988876 3 589
Q ss_pred eEecccccccccccccCCcc-cccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccc
Q 004825 500 VIEYCGGTEIGGGFITGSLL-QAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVY 578 (728)
Q Consensus 500 l~n~YG~TE~~~~~~~~~~~-~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~ 578 (728)
++|.||+||+++.++..... ......++|+|++|++++|+|++ .|+. |||+|.+..+..+ |+++++.+..
T Consensus 301 ~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~--GEl~v~g~~~~~g-Y~~~~~~t~~- 371 (501)
T 3ipl_A 301 IYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGH--GELMIKGANVMNG-YLYPTDLTGT- 371 (501)
T ss_dssp EEEEEEEGGGTEEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCC--EEEEEESTTSCSC-CSBSTTCCCS-
T ss_pred EeccccccccccceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCc--cEEEEeccchhhh-hCcChhhcch-
Confidence 99999999998755443332 22356789999999999999986 3443 9999977665543 4566666665
Q ss_pred cccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEE
Q 004825 579 FSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTI 658 (728)
Q Consensus 579 f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a 658 (728)
|. +| ||+|||+|++++||+++|+||.||+||++|+||+|.|||++|. .||+|.+|+|++.+++..| +.+++
T Consensus 372 ~~-----~g--~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~g-~~~~a 442 (501)
T 3ipl_A 372 FE-----NG--YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAK-QFPGISDAVCVGHPDDTWG-QVPKL 442 (501)
T ss_dssp EE-----TT--EEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHHHHHHHT-TSTTEEEEEEEEEEETTTE-EEEEE
T ss_pred hc-----CC--ceecCCEEEEcCCCeEEEEccccceEEECCEEECHHHHHHHHH-hCCCccEEEEEEEecccCC-ceEEE
Confidence 42 23 9999999999999999999999999999999999999999995 9999999999999988877 88999
Q ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhh
Q 004825 659 VVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 659 ~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+++... ..+.+++++ +|+++||.||+|..|+++++||+|+||||||++|++...+-
T Consensus 443 ~v~~~~----~~~~~~l~~----~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 443 YFVSES----DISKAQLIA----YLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp EEEESS----CCCHHHHHH----HHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred EEEeCC----CCCHHHHHH----HHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 998755 345555555 67888999999999999999999999999999999887653
No 28
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=8e-75 Score=660.12 Aligned_cols=504 Identities=16% Similarity=0.188 Sum_probs=309.8
Q ss_pred hhhhcccccCCCCCCeEEEEeccC--CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEG--DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~--~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
..++|.++++++||++|+++.+.. ......+++||+||+++++++|++|++.|+ +||+|+|+++|++++++++|||+
T Consensus 22 l~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~~~~~lA~~ 100 (562)
T 3ite_A 22 PSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIAFAIIVGIM 100 (562)
T ss_dssp TTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHHHHHHHHHH
Confidence 346688899999999999986521 111223589999999999999999999999 79999999999999999999999
Q ss_pred HcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcCCcEEEEcCCCCCcccccCCCCcCHHHH
Q 004825 257 LAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQAPLAIVIPAKGSSFSMKLRDGDISWLDF 336 (728)
Q Consensus 257 kaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 336 (728)
|+|+++||++|.++.+++.+++++++++++|+++....... ......++.. ....+.+.
T Consensus 101 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~----------~~~~~~~~~~-----------~~~~~~~~ 159 (562)
T 3ite_A 101 KSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE----------LPPETKVLDT-----------KNQSFIEN 159 (562)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC----------CCTTCEEEET-----------TCHHHHHH
T ss_pred HhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc----------cCccceeecc-----------cchhhhhh
Confidence 99999999999999999999999999999999875321110 0001111111 11122222
Q ss_pred HHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh--------cCCCCCCEEEecCCcch
Q 004825 337 LERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH--------MDIRKADIVAWPTNLGW 408 (728)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~--------~~~~~~d~~l~~~~~~~ 408 (728)
..... .........++++|||+|||||||.||||+++|+++.+.+.+.... +.+...+++++..+++|
T Consensus 160 ~~~~~----~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (562)
T 3ite_A 160 LSTQD----TSDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAF 235 (562)
T ss_dssp HHHSC----CSCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTS
T ss_pred ccccc----ccccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchh
Confidence 22111 1122234567889999999999999999999999998877665433 45788999999999999
Q ss_pred hhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHH
Q 004825 409 MMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEY 488 (728)
Q Consensus 409 ~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~ 488 (728)
+.++..++.++..|+++++.+....+..+.+.++++++|++.++|++++.+... ..++++||.+++|||++++++.
T Consensus 236 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~----~~~~~~lr~~~~gG~~l~~~~~ 311 (562)
T 3ite_A 236 DVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV----PEDAPHLVYLGVGGEKMTPRTQ 311 (562)
T ss_dssp THHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----GGGSTTCCEEEEESSCCCHHHH
T ss_pred hhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----ccccCceEEEEEecCCCCHHHH
Confidence 999999999999999999876433446788999999999999999999887432 3457899999999999999999
Q ss_pred HHHHhccCCCCeEecccccccccccccCCcccccccccccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCCc
Q 004825 489 LWLMGRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASS 567 (728)
Q Consensus 489 ~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~ 567 (728)
+++.+.+ +++++|.||+||+++.++...........++|+|+++++++|+|++ ++++|+|+. |||+|.+..+..+
T Consensus 312 ~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G- 387 (562)
T 3ite_A 312 QIWSSSD-RVALVNVYGPTEVTIGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMA--GELVIEGSLVANG- 387 (562)
T ss_dssp HHHTTCS-SCEEEEEECCGGGCSCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSC--EEEEEESTTSCCE-
T ss_pred HHHhhCC-CcEEEEeeccchheeeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCc--eEEEEeccccchh-
Confidence 9887754 5899999999999876655444444556789999999999999964 889999987 9999977665432
Q ss_pred cccCccccccccccCCCCCCceeEEeCceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHhcCC-CCeeeeEEEee
Q 004825 568 TLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD-SNVLETAAIGV 646 (728)
Q Consensus 568 ~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~-p~V~~~~Vv~~ 646 (728)
|+++++.|+..|. +|.+||+|||+|++++||+|+|+||+||+||++|+||+|.|||++|. .| |.+.+++|++.
T Consensus 388 Y~~~p~~t~~~~~-----~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~-~~~~~~~~~~v~~~ 461 (562)
T 3ite_A 388 YLNRPDAKGFCDI-----NGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIR-SLSPTDIDVVTLLL 461 (562)
T ss_dssp ESSCTTCCSEEEE-----TTEEEEEEEEEEEECTTSCEEEEEEC------------------------------------
T ss_pred hCCCccccccccC-----CCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHHHHHHHH-hcCCCceeEEEEEe
Confidence 4566776664432 47789999999999999999999999999999999999999999996 65 88899998888
Q ss_pred cCCCCCceEEEEEEEecCCCCCC--------CCHHHHHHHHHHHHHhhCCCCcccceEEECCCCCCC-CCCchhHHHHHH
Q 004825 647 PPPDGGPEQLTIVVVFKDSNYTP--------PDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRT-ATNKVMRRVLRK 717 (728)
Q Consensus 647 ~~~~~g~~~l~a~vv~~~~~~~~--------~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t-~~GKvdR~~L~~ 717 (728)
+++..+ +..+++++... +... .+...+.+.|+++|+++||.||+|..|+++++||+| +|||+||++|++
T Consensus 462 ~~~~~~-~~~~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~~~GKi~r~~L~~ 539 (562)
T 3ite_A 462 NHPGTS-KQFLVSFVASS-GAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRDTSAKTDAKALEH 539 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCc-ceEEEEEEecc-cccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCCCCCcchHHHHHH
Confidence 887776 44444444433 2100 111234457788899999999999999999999998 899999999999
Q ss_pred HHHhhcc
Q 004825 718 QLAQLDQ 724 (728)
Q Consensus 718 ~~~~~~~ 724 (728)
++++++.
T Consensus 540 ~~~~~~~ 546 (562)
T 3ite_A 540 MFHTLSL 546 (562)
T ss_dssp -------
T ss_pred HHhccCH
Confidence 9987654
No 29
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=7.5e-74 Score=656.66 Aligned_cols=506 Identities=15% Similarity=0.115 Sum_probs=400.7
Q ss_pred hhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHc
Q 004825 179 AKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLA 258 (728)
Q Consensus 179 ~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lka 258 (728)
..++|.++++++||++|+++.+. +..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+++
T Consensus 13 l~~~l~~~a~~~p~~~a~~~~~~----~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~lA~~~~ 88 (590)
T 3kxw_A 13 LVDVVRLRALHSPNKKSCTFLNK----ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAFLGCLYA 88 (590)
T ss_dssp HHHHHHHHHHHCTTSEEEEEEET----TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCeEEEEEcC----CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHHHHHHHh
Confidence 45678889999999999998642 11249999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCC---HHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC--CcEEEEcCCCCCcccccCCCCcCH
Q 004825 259 GYIVVSIADSFA---SLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA--PLAIVIPAKGSSFSMKLRDGDISW 333 (728)
Q Consensus 259 G~~~vpl~p~~~---~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~ 333 (728)
|+++||++|.++ .+++.++++++++++++++.......... ...... .....+. .
T Consensus 89 G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~----~~~~~~~~~~~~~~~----------------~ 148 (590)
T 3kxw_A 89 GCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTAD----ELNTNPKFLKIPAIA----------------L 148 (590)
T ss_dssp TCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC---------CCEETTEEEEE----------------G
T ss_pred CcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHh----hhhhcccccccceee----------------c
Confidence 999999999884 57899999999999999987532110000 000000 0011110 0
Q ss_pred HHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHH
Q 004825 334 LDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPW 413 (728)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~ 413 (728)
+++... ...........++++|||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|++++.
T Consensus 149 ~~~~~~----~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~ 224 (590)
T 3kxw_A 149 ESIELN----RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLI 224 (590)
T ss_dssp GGCCGG----GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHH
T ss_pred hhcccc----ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhhCCCCcCeEEEecCCCcchhhH
Confidence 000000 0111233456789999999999999999999999999999999998999999999999999999999997
Q ss_pred H-HHHHhhhCcEEEEeCCCC---CcchHHHHHHHhCCcEEEecHHHHHHHHcC---CCCCCCCCcCeeEEEeecCCCCHH
Q 004825 414 L-VYASLLNGASIALYNGSP---LGSGFAKFVQDAKVTMLGVVPSIVRTWKST---NCIDGYDWSSIRCFGSTGEASNVD 486 (728)
Q Consensus 414 ~-~~~~L~~G~~lvl~~~~~---~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~---~~~~~~~l~~lr~i~~gGe~l~~~ 486 (728)
. ++.+|+.|+++++.+... ++..+++.|+++++|++.++|+++..+++. ......++++||.+++|||+++++
T Consensus 225 ~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~l~~~ 304 (590)
T 3kxw_A 225 GCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEPVREE 304 (590)
T ss_dssp TTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSCCCHH
T ss_pred HHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCCCCHH
Confidence 5 889999999999986432 678899999999999999999999998765 223456789999999999999999
Q ss_pred HHHHHHhccC-----CCCeEecccccccccccccCCcc--------------------------cccccccccCCCCCce
Q 004825 487 EYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLL--------------------------QAQSLAAFSTPAMGCK 535 (728)
Q Consensus 487 ~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~--------------------------~~~~~~~iG~p~~~~~ 535 (728)
+.+++.+.++ +.+++|.||+||+++.++..... ......++|+|+++
T Consensus 305 ~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~-- 382 (590)
T 3kxw_A 305 TMEHFYQAFKEFGFRKEAFYPCYGLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE-- 382 (590)
T ss_dssp HHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--
T ss_pred HHHHHHHHHHHcCCCccccccccccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--
Confidence 9999887763 35799999999999866543211 11234689999998
Q ss_pred EEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCC--CCceeEEeCceEEEecCceEEEEcccC
Q 004825 536 LFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSR--NGQILRRHGDVFERTSGGYYRAHGRAD 612 (728)
Q Consensus 536 v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~--~g~~~y~TGDl~~~~~dG~l~~~GR~d 612 (728)
++|+|++ ++++|.|+. |||+|.++.+..+ |+++++.|++.|..++.. +|.+||+|||+|+++ ||.|+|+||+|
T Consensus 383 v~i~d~~~~~~~~~g~~--GEl~v~g~~v~~G-Y~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~d 458 (590)
T 3kxw_A 383 VKIIDPDTLIPCDFDQV--GEIWVQSNSVAKG-YWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIK 458 (590)
T ss_dssp EEEECTTTCCBCCTTBC--EEEEEESTTSCCC-BTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESS
T ss_pred eEEEcCCCCcCCCCCCE--EEEEEeCCccccc-ccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCcc
Confidence 8899987 999999987 9999977666543 467888999999876543 355699999999999 99999999999
Q ss_pred CeeecCceeecHHHHHHHHhcCCCCee--eeEEEeecCCCCCceEEEEEEEecCCCC-CCCCHHHHHHHHHHHHHhhCCC
Q 004825 613 DTMNLGGIKVSSVEIERICNAVDSNVL--ETAAIGVPPPDGGPEQLTIVVVFKDSNY-TPPDLNQLRMSFNSAVQKKLNP 689 (728)
Q Consensus 613 ~~iki~G~ri~~~eIE~~l~~~~p~V~--~~~Vv~~~~~~~g~~~l~a~vv~~~~~~-~~~~~~~l~~~l~~~l~~~Lp~ 689 (728)
||||++|+||+|.|||++|...||.|. +|+|++++++. + +.++++++..+ +. ...+.++++++++++|...+..
T Consensus 459 d~Ik~~G~~v~p~eIE~~l~~~~~~v~~~~~~v~~~~~~~-~-~~~~~~v~~~~-~~~~~~~~~~l~~~l~~~l~~~~~~ 535 (590)
T 3kxw_A 459 DLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEH-E-YKLTVMCEVKN-RFMDDVAQDNLFNEIFELVYENHQL 535 (590)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHSGGGGGEEEEEEEEEEETT-E-EEEEEEEEESC-TTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred ceEEECCEecCHHHHHHHHHhcCccccCccEEEEEecCCC-C-ceEEEEEEecc-ccccchhHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999944899998 89999988765 4 78999998876 32 1234456666666665543322
Q ss_pred CcccceEEECCCCCCCCCCchhHHHHHHHHHh
Q 004825 690 LFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQ 721 (728)
Q Consensus 690 ~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~ 721 (728)
.+.+..++.+++||+|+||||+|++|++++.+
T Consensus 536 p~~~i~~v~~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 536 EVHTIVLIPLKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp CCCEEEEEETTCSCCCSCHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCCccCcCCCcHHHHHHHHHHHHc
Confidence 23334566678999999999999999999976
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=1.2e-70 Score=628.58 Aligned_cols=493 Identities=16% Similarity=0.147 Sum_probs=389.8
Q ss_pred hHhhhhcccccCCCCCCeEEEEeccCCCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 177 NPAKNCLSVNSKRSLDDIVIRWCDEGDGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 177 ~~~~~~l~~~~~~~pd~~Al~~~~~~~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
....++|+++++++|+.+++..... ..+++||+||+++++++|++|+++|+++||+|+|+++|++++++++|||+
T Consensus 21 ~tl~~~l~~~a~~~p~~~~~~~~~~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~ 95 (576)
T 3gqw_A 21 PTLVDALDYAALSSAGMNFYDRRCQ-----LEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEFVEAFFACQ 95 (576)
T ss_dssp SSHHHHHHHHTTSSCEEEEECTTSC-----EEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhhCCCCeEEeCCCCC-----ceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHHH
Confidence 3456778889999999888754221 12489999999999999999999999999999999999999999999999
Q ss_pred HcCcEEEecCCCCC-------HHHHHHHHHhcCceEEEEecceecCCcccchH-hhHhhcCCcEEEEcCCCCCcccccCC
Q 004825 257 LAGYIVVSIADSFA-------SLEISARLRISKAKAIFTQDLIIRGDKSIPLY-RVIDAQAPLAIVIPAKGSSFSMKLRD 328 (728)
Q Consensus 257 kaG~~~vpl~p~~~-------~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~ 328 (728)
++|+++||+++.++ .+++.+++++++++++|+++.... .. ........ ..++.
T Consensus 96 ~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~------~~~~~~~~~~~-~~~~~------------ 156 (576)
T 3gqw_A 96 YAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLP------LVNAATHDNPE-LHVLS------------ 156 (576)
T ss_dssp HTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHH------HHHHHGGGCTT-CEEEE------------
T ss_pred HhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHH------HHHHhhccCCc-ceecc------------
Confidence 99999999999999 899999999999999999875321 11 11111111 11110
Q ss_pred CCcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHh-cCCCCCCEEEecCCcc
Q 004825 329 GDISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCH-MDIRKADIVAWPTNLG 407 (728)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~-~~~~~~d~~l~~~~~~ 407 (728)
. ...... ...........+++++||+|||||||.||||+++|+++++.+.+.... ++++++|++++++|++
T Consensus 157 ----~-~~~~~~---~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~ 228 (576)
T 3gqw_A 157 ----H-AWFKAL---PEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFY 228 (576)
T ss_dssp ----H-HHHHTS---CCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTSCCCTTCCEEECCCTT
T ss_pred ----h-hhhhcc---cccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhcccCCCCcceEEEcCCcc
Confidence 0 000000 111122234567999999999999999999999999999888777654 8899999999999999
Q ss_pred hhhhHHH-HHHHhhhCcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcCCC---CCCCCCcCeeEEEeec
Q 004825 408 WMMGPWL-VYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNC---IDGYDWSSIRCFGSTG 480 (728)
Q Consensus 408 ~~~~~~~-~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~---~~~~~l~~lr~i~~gG 480 (728)
|+++++. ++.++..|+++++.+.. .++..+++.|+++++|++.++|+++..+.+... ....++++||.+++||
T Consensus 229 h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg 308 (576)
T 3gqw_A 229 HDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEKDLAELDLSCWRVAGIGA 308 (576)
T ss_dssp SHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHHHHTTCCCTTCCEEEECS
T ss_pred ccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhcccccccCChhhhHhhhccC
Confidence 9999854 77889999999887532 367889999999999999999999988866432 2345689999999999
Q ss_pred CCCCHHHHHHHHhccC-----CCCeEecccccccccccccCCcccc---------------------------ccccccc
Q 004825 481 EASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQA---------------------------QSLAAFS 528 (728)
Q Consensus 481 e~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~~---------------------------~~~~~iG 528 (728)
|++++++.+++.+.++ +++++|.||+||+++.++....... ....++|
T Consensus 309 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G 388 (576)
T 3gqw_A 309 EPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCG 388 (576)
T ss_dssp SCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCC
T ss_pred ccCCHHHHHHHHHHHhhcCCCcccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecC
Confidence 9999999999887764 5789999999999976654332110 1123899
Q ss_pred CCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecCceEEEE
Q 004825 529 TPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSGGYYRAH 608 (728)
Q Consensus 529 ~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~dG~l~~~ 608 (728)
+|++|++++|+|++|+++|.|+. |||+|.+..+..+ |+++++.+++.|. .+||+|||+|++ +||.|+|+
T Consensus 389 ~p~~~~~~~i~d~~g~~~~~g~~--GEl~v~g~~~~~g-Y~~~~~~~~~~~~-------~g~~~TGDl~~~-~dG~l~~~ 457 (576)
T 3gqw_A 389 KALPEHGIEIRNEAGMPVAERVV--GHICISGPSLMSG-YFGDQVSQDEIAA-------TGWLDTGDLGYL-LDGYLYVT 457 (576)
T ss_dssp EECTTCEEEEECTTSCBCCTTBC--EEEEEESTTSCCC-BTTCHHHHHHHHH-------HSCEEEEEEEEE-ETTEEEEE
T ss_pred CcCCCCeEEEECCCCCCCCCCCe--EEEEEeCcccccc-ccCCccccccccC-------CCeeeccceEEE-ECCEEEEE
Confidence 99999999999999999999987 9999977665443 3555665655443 239999999999 79999999
Q ss_pred cccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhC-
Q 004825 609 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKL- 687 (728)
Q Consensus 609 GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~L- 687 (728)
||+||+||++|+||+|.|||++|. .||+|.+++|++..++.. .++++++... + .+...+.+.+.++++|
T Consensus 458 GR~dd~ik~~G~~v~p~eIE~~l~-~~p~V~~~~vv~~~~~~~---~~~~~~~~~~-~-----~~~~~~~l~~~l~~~l~ 527 (576)
T 3gqw_A 458 GRIKDLIIIRGRNIWPQDIEYIAE-QEPEIHSGDAIAFVTAQE---KIILQIQCRI-S-----DEERRGQLIHALAARIQ 527 (576)
T ss_dssp EETTTCEEETTEEECHHHHHHHHT-TSSSCCTTSEEEEECTTS---CEEEEEECCC-C-----CHHHHHHHHHHHHHHHH
T ss_pred ecCcceEEECCEEECHHHHHHHHH-hCcccccccEEEEEcCCc---cEEEEEEEec-C-----chhHHHHHHHHHHHHHH
Confidence 999999999999999999999995 999999999988877643 3555555433 1 1233444555666666
Q ss_pred CCCcccceEEECC--CCCCCCCCchhHHHHHHHHHhh
Q 004825 688 NPLFKVSHVVPLP--SLPRTATNKVMRRVLRKQLAQL 722 (728)
Q Consensus 688 p~~~~P~~i~~v~--~lP~t~~GKvdR~~L~~~~~~~ 722 (728)
+.|++|..+.+++ +||+|+|||+||++|++++++.
T Consensus 528 ~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~~~~ 564 (576)
T 3gqw_A 528 SEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKA 564 (576)
T ss_dssp HHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHHHHH
T ss_pred HHhCCceeEEEECCCCcCcCCCccchHHHHHHHHHHH
Confidence 6789998888877 8999999999999999999874
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=3.3e-58 Score=513.64 Aligned_cols=399 Identities=17% Similarity=0.119 Sum_probs=310.9
Q ss_pred HhhhhcccccCCCCCCeEEEEeccC-CCCCCceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHH
Q 004825 178 PAKNCLSVNSKRSLDDIVIRWCDEG-DGGLPVKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIV 256 (728)
Q Consensus 178 ~~~~~l~~~~~~~pd~~Al~~~~~~-~~~~~~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~l 256 (728)
...++|.++++++||++|+++.+.. +..+..+++||+||+++++++|++|+++|+ +||+|+|+++|++++++++|||+
T Consensus 25 tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~lA~~ 103 (480)
T 3t5a_A 25 SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFLGAL 103 (480)
T ss_dssp CHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHHHHH
Confidence 3556788899999999999997621 112334699999999999999999999996 99999999999999999999999
Q ss_pred HcCcEEEecCC---CCCHHHHHHHHHhcCceEEEEecceecCCcccchHhhHhhcC----CcEEEEcCCCCCcccccCCC
Q 004825 257 LAGYIVVSIAD---SFASLEISARLRISKAKAIFTQDLIIRGDKSIPLYRVIDAQA----PLAIVIPAKGSSFSMKLRDG 329 (728)
Q Consensus 257 kaG~~~vpl~p---~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~~~ 329 (728)
++|+++|||++ .++.+++.+++++++++++|++........ ....... ...+.++....
T Consensus 104 ~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--------- 169 (480)
T 3t5a_A 104 QAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV-----QHVARRPGESPPSIIEVDLLDL--------- 169 (480)
T ss_dssp HTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH-----HTCC------CCEEEEGGGSCT---------
T ss_pred HhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH-----HHHhccccccccceeEeccccc---------
Confidence 99999999999 889999999999999999999875421000 1000000 01111110000
Q ss_pred CcCHHHHHHhhhccccCccccccCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCC------CCEEEec
Q 004825 330 DISWLDFLERVRKLKENEFAAVEQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRK------ADIVAWP 403 (728)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~------~d~~l~~ 403 (728)
............++++|||+|||||||.||||+++|+++++.+.+....+.+.. +|+++++
T Consensus 170 -------------~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~d~~l~~ 236 (480)
T 3t5a_A 170 -------------DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSW 236 (480)
T ss_dssp -------------TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHHCTTTTTCCCTTEEEEEC
T ss_pred -------------ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHhccccccCCCCCCeEEEe
Confidence 001112234456789999999999999999999999999999988888888887 9999999
Q ss_pred CCcchhhhH-HHHHHHhhhCcEEEEeCCC---CCcchHHHHHHHhCCcEEEecHHHHHHHHcC----CCCCCCCCcCeeE
Q 004825 404 TNLGWMMGP-WLVYASLLNGASIALYNGS---PLGSGFAKFVQDAKVTMLGVVPSIVRTWKST----NCIDGYDWSSIRC 475 (728)
Q Consensus 404 ~~~~~~~~~-~~~~~~L~~G~~lvl~~~~---~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~----~~~~~~~l~~lr~ 475 (728)
+|++|++++ +.++.+|+.|+++++.+.. .++..+++.|+++++| +..+|+++..++.. ......++++||.
T Consensus 237 ~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~~~l~~lr~ 315 (480)
T 3t5a_A 237 LPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAGRDLGNILT 315 (480)
T ss_dssp CCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTTCCCTTCCE
T ss_pred CCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCcccccccchhhhhe
Confidence 999999997 5789999999999998643 3678899999999999 88899988887653 2234567899999
Q ss_pred EEeecCCCCHHHHHHHHhccC-----CCCeEecccccccccccccCCccc------------------------cccccc
Q 004825 476 FGSTGEASNVDEYLWLMGRAL-----YKPVIEYCGGTEIGGGFITGSLLQ------------------------AQSLAA 526 (728)
Q Consensus 476 i~~gGe~l~~~~~~~~~~~~~-----~~~l~n~YG~TE~~~~~~~~~~~~------------------------~~~~~~ 526 (728)
+++|||++++++.+++.+.++ ++.++|.||+||+++.++...... .....+
T Consensus 316 i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 395 (480)
T 3t5a_A 316 ILSGSERVQAATIKRFADRFARFNLQERVIRPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLIS 395 (480)
T ss_dssp EEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEEC
T ss_pred eeecCCcCCHHHHHHHHHHHhhcCCChhhccccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeee
Confidence 999999999999999988773 457999999999998665544321 123468
Q ss_pred ccCCCCCceEEEEcCC-CCccCCCCCceeEEEEeccccCCCccccCccccccccccCCC-----CCCceeEEeCceEEEe
Q 004825 527 FSTPAMGCKLFILGND-GCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPS-----RNGQILRRHGDVFERT 600 (728)
Q Consensus 527 iG~p~~~~~v~i~d~~-g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~-----~~g~~~y~TGDl~~~~ 600 (728)
+|+|++ ++++|+|++ |+++|.|+. |||+|++..+..+ |+++++.|++.|..++. .++++||+|||+|+++
T Consensus 396 ~G~p~~-~~~~ivd~~~g~~~~~g~~--GEl~v~g~~v~~G-Y~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d 471 (480)
T 3t5a_A 396 YMLPRS-PIVRIVDSDTCIECPDGTV--GEIWVHGDNVANG-YWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471 (480)
T ss_dssp EECCSS-SEEEEEETTTTEECCTTBC--EEEEEESTTSCCC-BTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred cCcccC-CEEEEEcCCCCcCCCCCCE--EEEEEeCCccccc-cccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence 999999 999999987 899999987 9999977665543 46788899998864332 2356799999999997
Q ss_pred cCceEEEEcc
Q 004825 601 SGGYYRAHGR 610 (728)
Q Consensus 601 ~dG~l~~~GR 610 (728)
||+|+|+||
T Consensus 472 -dG~l~~~GR 480 (480)
T 3t5a_A 472 -DGKMFIIGR 480 (480)
T ss_dssp -TTEEEECC-
T ss_pred -CCEEEEeCC
Confidence 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=6.2e-56 Score=473.55 Aligned_cols=319 Identities=17% Similarity=0.161 Sum_probs=268.0
Q ss_pred CCCceEEEecCCCCCCCceEEecCcHHHHHHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCc
Q 004825 355 VEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLG 434 (728)
Q Consensus 355 ~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~ 434 (728)
.+++|||+|||||||.||||+++|+++++.+.+....++++++|++++++|++|++++..++.+++.|+++++.+...+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~~~~- 114 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEPTAN- 114 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECCCSC-
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCcccc-
Confidence 4789999999999999999999999999999999899999999999999999999999999999999999999875433
Q ss_pred chHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecccccccccccc
Q 004825 435 SGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCGGTEIGGGFI 514 (728)
Q Consensus 435 ~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~ 514 (728)
.++.|+++++|++.++|+++..|++... ...++++||.+++|||++++++.+++.+. +++++|.||+||++..++
T Consensus 115 --~~~~i~~~~~t~~~~~P~~l~~ll~~~~-~~~~l~~lr~v~~gG~~l~~~~~~~~~~~--~~~~~~~YG~TEt~~~~~ 189 (358)
T 4gs5_A 115 --PLAGLDHADFDFVAMVPMQLQSILENSA-TSGQVDRLGKVLLGGAPVNHALAMQISDL--AMPVYQSYGMTETVSHVA 189 (358)
T ss_dssp --TTTTCSSCCCSEEEECHHHHHHHHHCTT-TGGGGGGGCSEEECSSCCCHHHHHHHHTC--SSCEEEEEECGGGSSEEE
T ss_pred --HHHHHHHhCCeEEEcChHHHHHhhcccc-ccccCCcceEEEEcccCCCchheeccccc--CceEEeccccccccceee
Confidence 4567889999999999999999988654 34568999999999999999999988763 589999999999987655
Q ss_pred cCCcccccccccccCCCCCceEEEEcCCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeC
Q 004825 515 TGSLLQAQSLAAFSTPAMGCKLFILGNDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHG 594 (728)
Q Consensus 515 ~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TG 594 (728)
.... .....+++|.|.||+++.+.+ . |||++.+.... .+||+||
T Consensus 190 ~~~~-~~~~~g~~~~~~pgv~~~~~~----------~--Gel~~~g~~~~-----------------------~g~~~TG 233 (358)
T 4gs5_A 190 LKAL-NGPEASELYVFLPGIQYGVDE----------R--GCLHISGAVTN-----------------------GQTVQTN 233 (358)
T ss_dssp EEEC-SSTTCCSCEEECTTCEEEECT----------T--SEEEEESGGGT-----------------------TCCEEEE
T ss_pred cccc-cccccceeeccCCCeEEEecC----------c--CceEEeccccc-----------------------CcceecC
Confidence 4333 334457889999998887643 2 89998654221 1299999
Q ss_pred ceEEEecCceEEEEcccCCeeecCceeecHHHHHHHHh--cCCCCeeeeEEE-eecCCCCCceEEEEEEEecCCCCCCCC
Q 004825 595 DVFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERICN--AVDSNVLETAAI-GVPPPDGGPEQLTIVVVFKDSNYTPPD 671 (728)
Q Consensus 595 Dl~~~~~dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~--~~~p~V~~~~Vv-~~~~~~~g~~~l~a~vv~~~~~~~~~~ 671 (728)
|+|++++|| ++|+||+||+||++|+||+|.|||++|. ..||+|.+|+|+ ..+++..| +.++|+|+...
T Consensus 234 Dlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~p~V~~a~vv~~~~d~~~g-e~~~a~v~~~~------- 304 (358)
T 4gs5_A 234 DLVEIHGNA-FQWIGRADNVINSGGVKIVLDQIDQRIAAVFHHLNIGNAFFCWWEPDAKLG-QKLVLVIENAM------- 304 (358)
T ss_dssp EEEEECSSE-EEEEEEGGGEEEETTEEEEHHHHHHHHHHHHHHHTCCCCEEEEEEEETTTE-EEEEEEEESCC-------
T ss_pred CccccccCc-eEEcccccCeEEECCEEECHHHHHHHHHHhccCCCccEEEEEEecCCccCC-EEEEEEEECCC-------
Confidence 999999988 6778999999999999999999998773 158999999887 56677777 78888887544
Q ss_pred HHHHHHHHHHHHHhhCCCCcccceEEECCCCCCCCCCchhHHHHHHHHHhhcc
Q 004825 672 LNQLRMSFNSAVQKKLNPLFKVSHVVPLPSLPRTATNKVMRRVLRKQLAQLDQ 724 (728)
Q Consensus 672 ~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~lP~t~~GKvdR~~L~~~~~~~~~ 724 (728)
.+...+.|+++|+++||.||+|..|+++++||+|+||||||++|++++++.++
T Consensus 305 ~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e~~~ 357 (358)
T 4gs5_A 305 PEALTERLTAEIRSRVSTYENPKHIYFAKAFAKTQTDKIDKRATFQKLSDSSN 357 (358)
T ss_dssp CHHHHHHHHHHHHHHSCGGGSCSCEEEESSCCBCTTSCBCHHHHHHHTC----
T ss_pred CCcCHHHHHHHHHhhCCCCCCceEEEEECCcCCCCCCChhHHHHHHHhhhhcC
Confidence 13345567778999999999999999999999999999999999999877543
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=3.8e-49 Score=434.23 Aligned_cols=326 Identities=21% Similarity=0.222 Sum_probs=257.3
Q ss_pred cCCC-CCceEEEecCCCCCCCceEEecCcHHHHHHHHH---HHhcCCCCCCEEEecCCcchhhhH-HHHHHHhhhCcEEE
Q 004825 352 EQPV-EAFTNILFSSGTTGEPKAIPWTNATPFKAAADA---WCHMDIRKADIVAWPTNLGWMMGP-WLVYASLLNGASIA 426 (728)
Q Consensus 352 ~~~~-~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~-~~~~~~L~~G~~lv 426 (728)
..++ ++++||+|||||||.||||+++|+++.+.+.+. ...++++++|++++..|++|..+. ..++.++..|++++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~ 160 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTV 160 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEE
Confidence 3455 899999999999999999999999997766554 344689999999999998755554 57889999999999
Q ss_pred EeCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCC--CCcCeeEEEeecCCCCHHHHHHHHhccCCCCeEecc
Q 004825 427 LYNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGY--DWSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYC 504 (728)
Q Consensus 427 l~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~--~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~Y 504 (728)
+.+. .++..+++.|+++++|++.++|+++..|++....... .+++||.+++|||++++++.+++.+.+ +++++|.|
T Consensus 161 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~Y 238 (436)
T 3qov_A 161 PAAA-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEPHTDEQRRKIERML-NVKAYNSF 238 (436)
T ss_dssp CCCS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEE
T ss_pred eCCC-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCcCCHHHHHHHHHHh-CccEEecC
Confidence 8764 4678899999999999999999999999876332332 378999999999999999999998887 58999999
Q ss_pred cccccccccccCCcccccccccccCCCCCceEEEEc-CCCCccCCCCCceeEEEEeccccCCCccccCccccccccccCC
Q 004825 505 GGTEIGGGFITGSLLQAQSLAAFSTPAMGCKLFILG-NDGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583 (728)
Q Consensus 505 G~TE~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d-~~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p 583 (728)
|+||+++.++.... .....+|.|.+++.++|+| ++|+++|.|+. |||+|.+.. ++.| |
T Consensus 239 G~TE~~~~~~~~~~---~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~--Gel~v~~~~-------------~~~~---~ 297 (436)
T 3qov_A 239 GMTEMNGPGVAFEC---QEQNGMHFWEDCYLVEIIDPETGEPVPEGEI--GELVLTTLD-------------REMM---P 297 (436)
T ss_dssp EEGGGTEEEEEEEC---TTCSSEEECTTTEEEEEECTTTCSBCSTTCC--EEEEEEESS-------------CCSS---C
T ss_pred cchhhcCCeeEEec---CCCCeeEEccCceEEEEEECCCCCCCCCCCc--eEEEEeccC-------------cCCc---e
Confidence 99999543222211 1122367788899999999 78999999987 999997521 1122 1
Q ss_pred CCCCceeEEeCceEEEecCc------e---EEEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCce
Q 004825 584 SRNGQILRRHGDVFERTSGG------Y---YRAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPE 654 (728)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~dG------~---l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~ 654 (728)
..||+|||+|++++|| + ++|+||.||+||++|++|+|.|||++|. .||+|.+++|++.+++..+ +
T Consensus 298 ----~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~-~~p~v~~~~vv~~~~~~~~-~ 371 (436)
T 3qov_A 298 ----LIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILV-QFPELGSNYLITLETVNNQ-D 371 (436)
T ss_dssp ----CCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHT-TCTTEEEEEEEEEEEETTE-E
T ss_pred ----EEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEECCEEECHHHHHHHHH-hCcCcCCcEEEEEEcCCCC-c
Confidence 1299999999999998 5 6999999999999999999999999995 9999999999998877666 8
Q ss_pred EEEEEEEecCCCCCCCC----HHHHHHHHHHHHHhhCCCC-cccceEEECC--CCCCCCCCchhHHH
Q 004825 655 QLTIVVVFKDSNYTPPD----LNQLRMSFNSAVQKKLNPL-FKVSHVVPLP--SLPRTATNKVMRRV 714 (728)
Q Consensus 655 ~l~a~vv~~~~~~~~~~----~~~l~~~l~~~l~~~Lp~~-~~P~~i~~v~--~lP~t~~GKvdR~~ 714 (728)
.++++|++.. .. .+ .++++++ |+++|+.+ ++|..+++++ +||+|+ ||++|..
T Consensus 372 ~l~a~v~~~~-~~--~~~~~~~~~l~~~----l~~~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~ 430 (436)
T 3qov_A 372 EMIVEVELSD-LS--TDNYIELEKIRRD----IIRQLKDEILVTPKVKLVKKGSLPQSE-GKAVRVK 430 (436)
T ss_dssp EEEEEEEECT-TC--CCCHHHHHHHHHH----HHHHHHHHHSSCCEEEEECTTCCC--------CEE
T ss_pred EEEEEEEEcC-cc--ccchhhHHHHHHH----HHHHHHHhcCCceEEEEeCCCcccCcC-CcceEEE
Confidence 9999999873 32 33 3455555 44555555 7888899988 999999 9999853
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=4e-48 Score=426.99 Aligned_cols=331 Identities=20% Similarity=0.171 Sum_probs=261.3
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH---HhcCCCCCCEEEecCCcc-hhhhHHHHHHHhhhCcEEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLG-WMMGPWLVYASLLNGASIAL 427 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~-~~~~~~~~~~~L~~G~~lvl 427 (728)
..+++++++|+|||||||.||||+++|+++.+...+.. ..++++++|++++..|++ |..++..++.++..|+++++
T Consensus 88 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 88 AVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp SSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred CCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 35678999999999999999999999999877654433 368899999999999985 66666778899999999988
Q ss_pred eCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCC--CcCeeEEEeecCCCCHHHHHHHHhccCCCCeEeccc
Q 004825 428 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYD--WSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 505 (728)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~--l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (728)
.+. .++..+++.|+++++|++.++|+++..|++.......+ +++||.+++|||++++++.+++.+.+ +++++|.||
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 245 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEPWTQALRNEVETRV-GIDALDIYG 245 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TCEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCcCCHHHHHHHHHHh-CcCEEeccC
Confidence 765 47788999999999999999999999998753222222 47899999999999999999998877 588999999
Q ss_pred ccccccc-cccCCcccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCccccccccccCC
Q 004825 506 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583 (728)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p 583 (728)
+||+++. +...... .....+.|.+++.++|+|+ +|+++|.|+. |||+|++. +++.| |
T Consensus 246 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~--Gel~v~~~-------------t~~~~---p 304 (443)
T 2y4o_A 246 LSEVMGPGVACECVE---TKDGPVIWEDHFYPEIIDPVTGEVLPDGSQ--GELVFTSL-------------TKEAM---P 304 (443)
T ss_dssp ETTTTEEEEEEECTT---TCCSEEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeEEeccCC---CCCceEEccCCeEEEEEcCCCCCCCCCCCc--eEEEEeCC-------------CcccC---h
Confidence 9997432 2221111 1112455778999999995 5999999987 99999752 12223 2
Q ss_pred CCCCceeEEeCceEEEecC-ceE-----EEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEE
Q 004825 584 SRNGQILRRHGDVFERTSG-GYY-----RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657 (728)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~d-G~l-----~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~ 657 (728)
..||+|||+|++++| |.+ +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++
T Consensus 305 ----~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~~~ 378 (443)
T 2y4o_A 305 ----VIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVV-ALPLLSGQFQITLSRDGHM-DRLD 378 (443)
T ss_dssp ----CSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEETTEEECHHHHHHHHH-TSTTEEEEEEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEcCCCCCCccccCccccccCCeEEECCEEECHHHHHHHHH-hCcCcCccEEEEEecCCCC-ceEE
Confidence 129999999999999 987 899999999999999999999999995 9999999999988776555 7899
Q ss_pred EEEEecC--CCC-CCCCHHHHHHHHHHHHHhhCCCCc-ccceEEEC--CCCCCCCCCchhHHHH
Q 004825 658 IVVVFKD--SNY-TPPDLNQLRMSFNSAVQKKLNPLF-KVSHVVPL--PSLPRTATNKVMRRVL 715 (728)
Q Consensus 658 a~vv~~~--~~~-~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~t~~GKvdR~~L 715 (728)
++|++.+ ... ...+.++ ++++|+++|+.|+ +|..+.++ ++||+|+|||++|+..
T Consensus 379 a~v~~~~~~~~~~~~~~~~~----l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~ 438 (443)
T 2y4o_A 379 LAVELRSEAAASVTDGERAA----LARELQHRIKTMVGVSSGVTVLAAGGIPATATGKARRVID 438 (443)
T ss_dssp EEEEECHHHHTTCCHHHHHH----HHHHHHHHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEE
T ss_pred EEEEECCcccccchhhHHHH----HHHHHHHHHHHHhCCceEEEEeCCCcccCccCCcceEEEe
Confidence 9998753 100 0112234 4445666666664 78777766 6999999999999753
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=5.9e-48 Score=424.91 Aligned_cols=330 Identities=21% Similarity=0.171 Sum_probs=262.8
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH---HhcCCCCCCEEEecCCc-chhhhHHHHHHHhhhCcEEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 427 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lvl 427 (728)
...++++++|+|||||||.||||+++|+++...+.+.. ..++++++|++++..|+ .|..++..++.++..|+++++
T Consensus 86 ~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 86 AVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred cCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 45678999999999999999999999999877654433 35789999999999998 567667778899999999987
Q ss_pred eCCCCCcchHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCC--CcCeeEEEeecCCCCHHHHHHHHhccCCCCeEeccc
Q 004825 428 YNGSPLGSGFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYD--WSSIRCFGSTGEASNVDEYLWLMGRALYKPVIEYCG 505 (728)
Q Consensus 428 ~~~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~--l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG 505 (728)
.+. .++..+++.|+++++|++.++|+++..|++.......+ ++++|.+++|||++++++.+++.+.+ +++++|.||
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~-g~~v~~~YG 243 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEPWTNDMRVAIEQRM-GIDAVDIYG 243 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSCCCHHHHHHHHHHH-TSEEEEEEE
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCccCCHHHHHHHHHHH-CcCEEecCC
Confidence 764 47788999999999999999999999998753222222 47899999999999999999998777 589999999
Q ss_pred ccccccc-cccCCcccccccccccCCCCCceEEEEcC-CCCccCCCCCceeEEEEeccccCCCccccCccccccccccCC
Q 004825 506 GTEIGGG-FITGSLLQAQSLAAFSTPAMGCKLFILGN-DGCPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMP 583 (728)
Q Consensus 506 ~TE~~~~-~~~~~~~~~~~~~~iG~p~~~~~v~i~d~-~g~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p 583 (728)
+||+++. +...... ....++.|.+++.++|+|+ +|+++|.|+. |||+|++. +++.| |
T Consensus 244 ~TE~~g~~~~~~~~~---~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~--Gel~v~~~-------------t~~~~---~ 302 (437)
T 2y27_A 244 LSEVMGPGVASECVE---TKDGPTIWEDHFYPEIIDPETGEVLPDGEL--GELVFTSL-------------TKEAL---P 302 (437)
T ss_dssp ETTTTEEEEEECCTT---TCSSCEECTTTEEEEEECTTTCCBCCTTCC--EEEEEEES-------------SCSSS---C
T ss_pred chhhcCCeeEEecCC---CCCceeEccCceEEEEEcCCCCCCCCCCCc--cEEEEecC-------------CcCCc---h
Confidence 9998432 2222211 1112556778999999995 5999999987 99999752 12223 1
Q ss_pred CCCCceeEEeCceEEEec-CceE-----EEEcccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEE
Q 004825 584 SRNGQILRRHGDVFERTS-GGYY-----RAHGRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLT 657 (728)
Q Consensus 584 ~~~g~~~y~TGDl~~~~~-dG~l-----~~~GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~ 657 (728)
..||+|||+|++++ ||++ +++||.||+||++|++|+|.|||++|. .||+|.+++|++++++..+ +.++
T Consensus 303 ----~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~-~~p~V~~~~vv~~~~~~~~-~~l~ 376 (437)
T 2y27_A 303 ----IIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLL-KQRALAPHYQIVLTKEGPL-DVLT 376 (437)
T ss_dssp ----CCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHT-TCTTBCSCCEEEEEEETTE-EEEE
T ss_pred ----hheeecCCEEEEeCCCCCCccccCccccccCCeEEECCeEECHHHHHHHHH-hCcCcCccEEEEEeecCCC-ceEE
Confidence 12999999999999 6986 899999999999999999999999995 9999999999988776665 8899
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCc-ccceEEEC--CCCCCCCCCchhHHH
Q 004825 658 IVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLF-KVSHVVPL--PSLPRTATNKVMRRV 714 (728)
Q Consensus 658 a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~-~P~~i~~v--~~lP~t~~GKvdR~~ 714 (728)
++|++.+ +. ..+. .-.+.++++|+++|+.|+ +|..+.++ ++||+|+ ||++|+.
T Consensus 377 a~v~~~~-~~-~~~~-~~~~~l~~~l~~~l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 377 LNVEPCP-ET-APDT-AAIQVAKQALAYDIKSLIGVTAVINVLPVNGIERSV-GKARRVV 432 (437)
T ss_dssp EEECBCT-TT-TTCH-HHHHHHHHHHHHHHHHHHCCCEEEEECCTTCSCCCS-SSCCCEE
T ss_pred EEEEECC-Cc-cchh-hhHHHHHHHHHHHHHHhcCCceEEEEeCCCCccCCC-CcceEEE
Confidence 9999876 43 1111 112344556667777774 88888888 5999999 9999864
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.97 E-value=7.5e-32 Score=289.55 Aligned_cols=238 Identities=14% Similarity=0.043 Sum_probs=180.6
Q ss_pred cCCCCCceEEEecCCCCCCCceEEecCcHHHHHHHHHH---HhcCCCCCCEEEecCCc-chhhhHHHHHHHhhhCcEEEE
Q 004825 352 EQPVEAFTNILFSSGTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNL-GWMMGPWLVYASLLNGASIAL 427 (728)
Q Consensus 352 ~~~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~-~~~~~~~~~~~~L~~G~~lvl 427 (728)
..+++++++|+|||||||+||||+++|+++.+.+.+.. ..++++++|++++..|+ .|+.++...+.++..|+ +++
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~-~v~ 165 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGG-MFF 165 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTS-CEE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCC-EEE
Confidence 34789999999999999999999999999998887553 45678999999999999 89899888788899999 444
Q ss_pred eCCCCCcc-----------------------hHHHHHHHhCCcEEEecHHHHHHHHcCCCCCCCCCcCeeEEEeecCCCC
Q 004825 428 YNGSPLGS-----------------------GFAKFVQDAKVTMLGVVPSIVRTWKSTNCIDGYDWSSIRCFGSTGEASN 484 (728)
Q Consensus 428 ~~~~~~~~-----------------------~l~~~i~~~~vt~l~~~Ps~l~~l~~~~~~~~~~l~~lr~i~~gGe~l~ 484 (728)
.. ..++. .+++.|+++++|++.++|+++..|++.......++++||.+++|||+++
T Consensus 166 ~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~lr~i~~gGe~l~ 244 (369)
T 3hgu_A 166 SI-DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELN 244 (369)
T ss_dssp CC-CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHHHHHHHHHHCSEEEEESSCCC
T ss_pred Cc-cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhhhhccccCCeeEEEECCccCC
Confidence 43 23444 6777999999999999999999998763222245678999999999999
Q ss_pred HHHHHHHH-hccCCCCeEecccccccccccccCCcccccccccccCC------CCCceEEEEcC-CCCccCCCCCceeEE
Q 004825 485 VDEYLWLM-GRALYKPVIEYCGGTEIGGGFITGSLLQAQSLAAFSTP------AMGCKLFILGN-DGCPIPQNVPGMGEL 556 (728)
Q Consensus 485 ~~~~~~~~-~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~iG~p------~~~~~v~i~d~-~g~~vp~g~~giGEl 556 (728)
+++.+++. +.+++++++|.||+||+++++..+. ..++|+| +++++++|+|+ +|+++|.|+. |||
T Consensus 245 ~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~------~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~--GEl 316 (369)
T 3hgu_A 245 LDEIKFIASEILPDCEFSASYGSTSALGVSRSLL------ITSESQQVIYDSFSPFITYDVVDSITAQTVEYGER--GNV 316 (369)
T ss_dssp HHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECC------BCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCE--EEE
T ss_pred HHHHHHHHHHhCCCcEEEcccCchhhhcceeccc------cccCCCcccccCCCCCeEEEEECCCCCcCCCCCCc--eEE
Confidence 99999999 8887899999999999886543221 1158999 99999999998 8999999986 999
Q ss_pred EEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecC--c-------eEEEEcccCCeeecCce
Q 004825 557 ALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG--G-------YYRAHGRADDTMNLGGI 620 (728)
Q Consensus 557 ~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~d--G-------~l~~~GR~d~~iki~G~ 620 (728)
+|.+..- ..|.. .|+|||++++.+. | .+..++|.|+++||.|.
T Consensus 317 ~vt~l~~-------------~~~l~--------ry~tgD~~~~~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv 368 (369)
T 3hgu_A 317 IVTHLSP-------------WAFYP--------RVAERDTAIRLPGVSGFAGDRLADIEPLKISEGRKVIEGV 368 (369)
T ss_dssp EEEEEET-------------TEEEE--------EEEEEEEEEEECCSTTCSSCEEEEEEECC-----------
T ss_pred EEEEcCc-------------ccccc--------cccCCceEEEecCCCCCcCcccccceeccccCCCceeeec
Confidence 9964321 12211 5999999998643 2 46778999999999885
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.57 E-value=2.5e-15 Score=129.95 Aligned_cols=96 Identities=19% Similarity=0.316 Sum_probs=73.2
Q ss_pred cccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCH---HHHHHHHHHHHHh
Q 004825 609 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDL---NQLRMSFNSAVQK 685 (728)
Q Consensus 609 GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~---~~l~~~l~~~l~~ 685 (728)
.|.||+||++|+||+|.|||++|. .||+|.+++|++++++..+ +.+.++++..+ +. ..+. +++.++++++++.
T Consensus 1 srADDmIiv~G~nv~P~eIE~vl~-~~p~v~~~~vv~v~~~~~~-~~~~~~V~~~~-~~-~~~~~~~~~l~~~i~~~l~~ 76 (109)
T 3lax_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVELSQ-LF-TDDYGRLQALTREITRQLKD 76 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEECT-TC-CCCHHHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEECCEEECHHHHHHHHH-hCCCcccceEEEEeccccc-eeEEEEEEEee-cc-ccccchhhhhHHHHHHHHHH
Confidence 499999999999999999999996 9999999999999888777 88999998876 44 2332 4566677777766
Q ss_pred hCCCCcccceEEEC--CCCCCCCCCchhH
Q 004825 686 KLNPLFKVSHVVPL--PSLPRTATNKVMR 712 (728)
Q Consensus 686 ~Lp~~~~P~~i~~v--~~lP~t~~GKvdR 712 (728)
++. +|..+.++ ++||+| +||+.|
T Consensus 77 ~~g---v~~~v~~v~~~~lPrt-sGKi~R 101 (109)
T 3lax_A 77 EIL---VTPRVKLVPKGALPKS-EGKAVR 101 (109)
T ss_dssp HHS---SCCEEEEECTTCSCCC----CCC
T ss_pred HhC---CccceEEEcCCeecCC-CCCcch
Confidence 653 34344444 589999 799987
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.54 E-value=1.5e-14 Score=124.77 Aligned_cols=97 Identities=20% Similarity=0.317 Sum_probs=75.6
Q ss_pred cccCCeeecCceeecHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCC---CCHHHHHHHHHHHHHh
Q 004825 609 GRADDTMNLGGIKVSSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTP---PDLNQLRMSFNSAVQK 685 (728)
Q Consensus 609 GR~d~~iki~G~ri~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~---~~~~~l~~~l~~~l~~ 685 (728)
||.||+||++|++|+|.|||++|. .||+|.++++++++++.++ +.+++++++ + +... .+.+++.++|++++++
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~-~~p~v~~~~~v~v~~~~~~-e~l~~~ve~-~-~~~~~~~~~~~~l~~~i~~~l~~ 76 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILL-QFKELGSDYLITLETAESN-DEMTVEVEL-S-QLFTDDYGRLQALTREITRQLKD 76 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHH-TCTTEEEEEEEEEEEETTE-EEEEEEEEE-C-TTCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHH-hCCCcCCcEEEEEEcCCCc-eEEEEEEEE-c-CccccchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999996 8999998888888776655 889999998 5 4311 1346788888888877
Q ss_pred hCCCCcccceEEECC--CCCCCCCCchhHH
Q 004825 686 KLNPLFKVSHVVPLP--SLPRTATNKVMRR 713 (728)
Q Consensus 686 ~Lp~~~~P~~i~~v~--~lP~t~~GKvdR~ 713 (728)
.+. +|..+.+++ +||+| |||+.|.
T Consensus 77 ~~~---~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 77 EIL---VTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHS---SCCEEEEECTTCSCCC----CCCE
T ss_pred hhC---CceEEEEECCCCccCC-CCceEEE
Confidence 653 333677777 89999 9999873
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.77 E-value=1.5e-07 Score=103.31 Aligned_cols=162 Identities=14% Similarity=0.020 Sum_probs=91.1
Q ss_pred CcCeeE--EEeecCCCCHHHHHHHHhccCCCCeE-ecccccccccccccCCcccccccccccC-CCCCc-eEEEE--cCC
Q 004825 470 WSSIRC--FGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST-PAMGC-KLFIL--GND 542 (728)
Q Consensus 470 l~~lr~--i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~~-~v~i~--d~~ 542 (728)
+|++++ ++++|.. ..-...+...+++.+++ ..|+.||.-+.+-.. +.. .+...+. .+++. -...+ |+.
T Consensus 301 WPnl~~i~~~~~G~~--~~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~-p~~--~~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 301 FPNAKYVYGIMTGSM--EPYVPKLRHYAGDLPLVSHDYGSSEGWIAANVT-PRL--SPEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp CTTCCCEEEECSGGG--GGGHHHHHHHHTTSCEEECCEEETTEEEEECCC-TTS--CTTTCCEEECTTSCEEEEEEC---
T ss_pred CCCCceEEEEeCCCh--HHHHHHHHHHcCCCccccCceeccceeeeeecC-CCC--CccccceeecCCcEEEEEEecccc
Confidence 567753 3344432 12223444444567877 999999964332211 111 1111111 12222 12233 222
Q ss_pred C---------CccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEecC----ceEEEEc
Q 004825 543 G---------CPIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTSG----GYYRAHG 609 (728)
Q Consensus 543 g---------~~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~d----G~l~~~G 609 (728)
+ ..|..|+. +||+|+... + + -.|++||+++...- ..+.|+|
T Consensus 376 ~~~~~~~v~l~eve~G~~--YelviTt~~--G---L-------------------~RYr~GD~v~v~g~~~~~p~~~~~g 429 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEE--YEVVITNYA--G---L-------------------YRYRLGDVVKVIGFYNNTPQLKFIC 429 (581)
T ss_dssp ----CCCEEGGGCCTTCE--EEEEEESTT--S---C-------------------SSEEEEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeeHHHcCCCCe--EEEEEeecc--c---e-------------------eeEEcCCEEEEecccCCCcEEEEEe
Confidence 1 24567775 999985431 1 0 03999999998742 6799999
Q ss_pred ccCCeeecCceeecHHHHHHHHhcC-----CC--CeeeeEEEeecCCCCCceEEEEEEEecC
Q 004825 610 RADDTMNLGGIKVSSVEIERICNAV-----DS--NVLETAAIGVPPPDGGPEQLTIVVVFKD 664 (728)
Q Consensus 610 R~d~~iki~G~ri~~~eIE~~l~~~-----~p--~V~~~~Vv~~~~~~~g~~~l~a~vv~~~ 664 (728)
|.++++++.|.++...+||.+|.+. .. .|.|..+..-.....+ .-+.|+.+..
T Consensus 430 R~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~--hyv~~wE~~~ 489 (581)
T 4epl_A 430 RRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPG--HYAIFWEISG 489 (581)
T ss_dssp ETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSC--EEEEEEEESS
T ss_pred ecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCC--cEEEEEeecC
Confidence 9999999999999999999998632 12 3667666542222222 3444556643
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.75 E-value=1.7e-07 Score=103.33 Aligned_cols=56 Identities=16% Similarity=0.275 Sum_probs=45.5
Q ss_pred eEEeCceEEEec----CceEEEEcccCCeeecCceeecHHHHHHHHhcCC-----C--CeeeeEEEe
Q 004825 590 LRRHGDVFERTS----GGYYRAHGRADDTMNLGGIKVSSVEIERICNAVD-----S--NVLETAAIG 645 (728)
Q Consensus 590 ~y~TGDl~~~~~----dG~l~~~GR~d~~iki~G~ri~~~eIE~~l~~~~-----p--~V~~~~Vv~ 645 (728)
.|++||+++... ...|.|+||.+++++++|.+|...+||.+|.+.. . .|.|..+..
T Consensus 411 RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~ 477 (609)
T 4b2g_A 411 RYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFA 477 (609)
T ss_dssp SEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEE
T ss_pred heecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEec
Confidence 399999999974 4789999999999999999999999999996322 2 256665543
No 41
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.68 E-value=8.3e-08 Score=105.69 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=81.5
Q ss_pred CcC---eeEEEeecCCCCHHHHHHHHhccCCCCeE-ecccccccccccccCCcccccccccccC-CCCC-ceEEEEcCC-
Q 004825 470 WSS---IRCFGSTGEASNVDEYLWLMGRALYKPVI-EYCGGTEIGGGFITGSLLQAQSLAAFST-PAMG-CKLFILGND- 542 (728)
Q Consensus 470 l~~---lr~i~~gGe~l~~~~~~~~~~~~~~~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~iG~-p~~~-~~v~i~d~~- 542 (728)
+|+ +.+++.||-. .-...++..+++.+++ ..|+.||....+-...... +...+. .+++ .-...++.+
T Consensus 296 WPnl~~l~~~~~G~~~---~Y~~~l~~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~---~~~~~~~L~~~~~ffEFip~~~ 369 (581)
T 4eql_A 296 WPNTKYIETVVTGSMG---QYVPMLNYYCNDLPLVSTTYGSSETTFGINLDPLCK---PEDVSYTFMPNMSYFEFIPMDG 369 (581)
T ss_dssp STTCCEEEEECSGGGG---GGHHHHHHHHTTCCEECCEEECSSCEEEECSCTTSC---GGGCCEEECTTSSEEEEEECST
T ss_pred CCCCcEEEEEcCCChH---HHHHHHHHHcCCCccccCccccccceeeeccCCCCC---cccCceeecCCcEEEEEEeccc
Confidence 466 6666677732 2223444445667777 9999999643221111111 111121 1222 223344321
Q ss_pred ---CC-----ccCCCCCceeEEEEeccccCCCccccCccccccccccCCCCCCceeEEeCceEEEec----CceEEEEcc
Q 004825 543 ---GC-----PIPQNVPGMGELALSPLIFGASSTLLNANHYDVYFSGMPSRNGQILRRHGDVFERTS----GGYYRAHGR 610 (728)
Q Consensus 543 ---g~-----~vp~g~~giGEl~v~~~~~~~~~~~~~~~~~~~~f~~~p~~~g~~~y~TGDl~~~~~----dG~l~~~GR 610 (728)
.+ .|..|+. +||+|+.. ++. -.|++||+++... ...|.|+||
T Consensus 370 ~~~~~~v~l~eVe~G~~--YelViTt~--~GL----------------------~RYr~GD~v~v~~f~~~~p~i~f~gR 423 (581)
T 4eql_A 370 GDKNDVVDLEDVKLGCT--YEPVVTNF--AGL----------------------YRMRVGDIVLVTGFYNNAPQFKFVRR 423 (581)
T ss_dssp TCCSSCEEGGGCCTTCE--EEEEEECS--SSC----------------------CSEECCEEEEEEEEETTEEEEEEEEE
T ss_pred cCCCcEeCHHHcCCCce--EEEEEeec--cce----------------------eeEEcCCEEEEcccCCCCcEEEEEEe
Confidence 12 2446665 89988533 110 0399999999986 478999999
Q ss_pred cCCeeecCceeecHHHHHHHHhcCC
Q 004825 611 ADDTMNLGGIKVSSVEIERICNAVD 635 (728)
Q Consensus 611 ~d~~iki~G~ri~~~eIE~~l~~~~ 635 (728)
.+++++++|++|...+||++|.+..
T Consensus 424 ~~~~l~~~Gekl~~~~v~~al~~a~ 448 (581)
T 4eql_A 424 ENVVLSIDSDKTNEEDLFKAVSQAK 448 (581)
T ss_dssp TTEEECSSSCCEEHHHHHHHHHHC-
T ss_pred cCCEEEeeeeECCHHHHHHHHHHHH
Confidence 9999999999999999999996433
No 42
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=98.19 E-value=2.8e-08 Score=110.98 Aligned_cols=118 Identities=13% Similarity=0.014 Sum_probs=96.3
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCC--CCCcc-------
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPD--PPAWI------- 85 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~--~~~~~------- 85 (728)
.+++++..+++.+|.++|+++++...+ +||++||++|++.+++.|+.+++|+ |+++|++.+. .....
T Consensus 374 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~h~~~p~~~i~~~l~~~r~~~~~~l--f~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
T 2jgp_A 374 TLAMRNKPQREKTFSEFLQEVKQNALDAYGHQDYPFEELVEKLAIARDLSRNPL--FDTVFTFQNSTEEVMTLPECTLAP 451 (520)
T ss_dssp EEEEEECCCTTSBHHHHHHHHHHHHHHHHHTCCSCHHHHHHHTCCCCCTTSCSS--CSEEEEEECCCCSCCCCSSEEEEE
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHHHHHhccCCHHHHHHHhcCCCCCCCCCc--EEEEEEEecCCCccccCCCceeEE
Confidence 367888888889999999999998877 9999999999999999999888998 8888887211 11111
Q ss_pred -CChhh--hhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhc
Q 004825 86 -PDPEA--AKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (728)
Q Consensus 86 -~~~~~--~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~ 141 (728)
+.... ..++||.+.+...++++...+ |++ ++|.+++++++.++|..+|+++
T Consensus 452 ~~~~~~~~~~~~~L~l~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~lL~~l 506 (520)
T 2jgp_A 452 FMTDETGQHAKFDLTFSATEEREEMTIGVEYST-----SLFTRETMERFSRHFLTIAASI 506 (520)
T ss_dssp CSSCSSCSBCSSSEEEEEEECSSCEEEEEEEET-----TTCCHHHHHHHHHHHHHHHHHH
T ss_pred eecCCCCcceeeeeEEEEEECCCeEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHH
Confidence 11112 567888887777788888888 999 9999999999999999999987
No 43
>4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus}
Probab=97.63 E-value=1.2e-06 Score=96.84 Aligned_cols=131 Identities=6% Similarity=-0.077 Sum_probs=89.9
Q ss_pred HHHcCCChHH--HHHHHHHHHHHHHhcCC--CChhhHHHHHHh---hcCCCCCCccchhheeeecccCCCC---CC----
Q 004825 17 IEALGIPSKL--AEQLHEKLAEIVNTHGA--ATPATWQNITTH---ILSPDLPFSFHQLLYYGCYKDFGPD---PP---- 82 (728)
Q Consensus 17 ~~~~~~~~~~--~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~---~l~~~r~~~~~~~~f~~~~~~~~~~---~~---- 82 (728)
.+++++..++ ..+|.++|+++++...+ +| ++||+.|++ +|+..|+.+.+|+ |+++|++.+. ..
T Consensus 299 ~lplr~~~~~~~~~t~~~~l~~v~~~~~~~~~h-~~p~~~i~~~~~~l~~~~~~~~~~l--f~~~~~~~~~~~~~~~~~~ 375 (493)
T 4hvm_A 299 RVVFGVDLTGLREPSFRDLMSRTQAGFLDAVVH-YLPYHDVVDLAVDLGVVTPPRVAAR--WDVAVHLCRNAPSSSLTRG 375 (493)
T ss_dssp EEEEEEECTTCSSCBHHHHHHHHHHHHHHHHHT-CCCHHHHHHHHHHTTSCBTTBTTGG--GCEEECC------------
T ss_pred eeEEEEecCCCcCCCHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHhhhCcccCCCCCcc--eeEEEEEEecCCccccccc
Confidence 4567777788 88999999999998877 99 999999999 9999999999999 9999988211 00
Q ss_pred ---CccCCh----------------------hhhhhcc---HHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHH
Q 004825 83 ---AWIPDP----------------------EAAKVTN---VGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVY 133 (728)
Q Consensus 83 ---~~~~~~----------------------~~~~~~~---l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~ 133 (728)
+..+.. ..+++++ +.+.+...++++...+ |+. ++| +++++++.++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~l~v~~~~~~l~~~~~y~~-----~l~-~~~i~~l~~~ 449 (493)
T 4hvm_A 376 ERTLAELGVSIELFREADLIGGDTRSATDTWDGTDTWDGTTTDLSVGELGEDMVIVLDQRR-----THP-AGGGSALLDG 449 (493)
T ss_dssp --------CEEEECSHHHHCC-------CCTTCCCCCCCCCEEEEEEEETTEEEEEEEECC-------------CHHHHH
T ss_pred cccccCCCceeeeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEEEEcc-----ccC-HHHHHHHHHH
Confidence 000000 0113567 7777777788888889 999 999 9999999999
Q ss_pred HHHHHHhcCcceecCCceeecCCCCCC
Q 004825 134 WKTVLNEMSTSFSVPPQCILRENPNGE 160 (728)
Q Consensus 134 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 160 (728)
|..+|+++ .+.|+..+...++..
T Consensus 450 ~~~~L~~~----~~~p~~~l~~l~ll~ 472 (493)
T 4hvm_A 450 LDAAMAQA----VADPSAPLPHSTVDT 472 (493)
T ss_dssp HHHHHHHH----HHCTTSBCCC-----
T ss_pred HHHHHHHH----HhCCCCccccCCCCC
Confidence 99999997 355555555555433
No 44
>1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2
Probab=97.11 E-value=6e-06 Score=89.69 Aligned_cols=116 Identities=6% Similarity=-0.073 Sum_probs=84.7
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC--CChhhHHHHHHhhcCCCCCCccchhheeeecccCCCCCCCccCCh------
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA--ATPATWQNITTHILSPDLPFSFHQLLYYGCYKDFGPDPPAWIPDP------ 88 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~--~hq~~pfe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~~~~~~~~~------ 88 (728)
.+++++..++..+|.++++++++...+ +||++||++|++.++..++ .+|+ |+++|++.+......++.
T Consensus 278 ~lplr~~~~~~~t~~~~l~~v~~~~~~~~~h~~~~~~~i~~~l~~~~~--~~~l--f~~~~~~~~~~~~~~~~~~~~~~~ 353 (436)
T 1l5a_A 278 SLPLLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAE--QSYF--MSPFINILPFESPHFADCQTELKV 353 (436)
T ss_dssp EEEEECCCCTTCBHHHHHHHHHHHHHHHHHTTTSCHHHHHHHTTCCTT--CCBC--CCSEEEEECCCCCCCTTCEEEEEE
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHHhhhcCCCHHHHHHHhccccc--CCCc--cceEEEeeccCccccCCCeeEEEe
Confidence 467888888899999999999998877 9999999999999987663 3455 555555511100011110
Q ss_pred --hhhhhccHHHHHH-HhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhcC
Q 004825 89 --EAAKVTNVGKLLQ-TRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEMS 142 (728)
Q Consensus 89 --~~~~~~~l~~~~~-~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~~ 142 (728)
....+ +|.+.+. ..++++...+ |+. ++|.+++++++.++|..+|+++.
T Consensus 354 ~~~~~~~-~l~l~v~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~l~~l~ 405 (436)
T 1l5a_A 354 LASGSAE-GINFTFRGSPQHELCLDITADL-----ASYPQSHWQSHCERFPRFFEQLL 405 (436)
T ss_dssp EEECCCC-SEEEEEEECTTSCEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcc-ceEEEEEecCCCcEEEEEEeCh-----hhCCHHHHHHHHHHHHHHHHHHH
Confidence 11222 6666655 3567788888 999 99999999999999999999974
No 45
>2xhg_A Tyrocidine synthetase A; isomerase, nonribosomal peptide synthesis, cofactor-independ epimerization; 1.50A {Brevibacillus brevis}
Probab=95.45 E-value=0.00034 Score=76.40 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=78.8
Q ss_pred HHHcCCChHHHHHHHHHHHHHHHhcCC-CChhhHHHHHHhhcCCC-----CCCccch-hheeeec-ccCC--CCCC--Cc
Q 004825 17 IEALGIPSKLAEQLHEKLAEIVNTHGA-ATPATWQNITTHILSPD-----LPFSFHQ-LLYYGCY-KDFG--PDPP--AW 84 (728)
Q Consensus 17 ~~~~~~~~~~~~~f~~~l~~~~~~~~~-~hq~~pfe~lv~~l~~~-----r~~~~~~-~~f~~~~-~~~~--~~~~--~~ 84 (728)
.+++++..+.+.+|.++|+++++.... .||++||+ +++.+... +..+..| ++|.... +... .... ..
T Consensus 309 ~lplr~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~~~~~~~~~ 387 (466)
T 2xhg_A 309 QYPVLLDLKQTAPLSDYIKLTKENMRKIPRKGIGYD-ILKHVTLPENRGSLSFRVQPEVTFNYLGQFDADMRTELFTRSP 387 (466)
T ss_dssp EEEEEEECSCCCSHHHHHHHHHHHHHHSGGGGTHHH-HHHHTSCGGGSTTCCCCCCCSEEEEEEEECCTTCSSSSCEECT
T ss_pred eccEEEecCCCCCHHHHHHHHHHHHHhCccCCcccc-eeeecccccccccccccCCCeEEEeecCcccccccCCceeccc
Confidence 357777777888999999999987655 89999999 56777653 3334444 3332221 1100 0000 00
Q ss_pred cCC-------------hhhhhhccHHHHHHHhccccccCC-CCCCCCCHHHHHHHHhhCHHHHHHHHHHhc
Q 004825 85 IPD-------------PEAAKVTNVGKLLQTRGEEFLGSG-YKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (728)
Q Consensus 85 ~~~-------------~~~~~~~~l~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~ 141 (728)
.+. .....+++|.+.+...++++...+ |+. ++|.+.+|+++.++|..+|+++
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~y~~-----~~~~~~~i~~l~~~~~~~L~~l 453 (466)
T 2xhg_A 388 YSGGNTLGADGKNNLSPESEVYTALNITGLIEGGELVLTFSYSS-----EQYREESIQQLSQSYQKHLLAI 453 (466)
T ss_dssp TCTTCCSSTTCTTSBCTTSBCCCSEEEEEEEETTEEEEEEEEET-----TTSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCccccCcccccccccccCcceeEEEEEEEECCEEEEEEEECh-----hhCCHHHHHHHHHHHHHHHHHH
Confidence 010 011126677766555677788888 999 9999999999999999999986
No 46
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=90.74 E-value=1.7 Score=46.27 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=77.5
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEe
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVS 264 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vva~lA~lkaG~~~vp 264 (728)
..++.+|.+.-..| .+|. .-.+|.+.+...+..+++.+...|+.++|++..+++-+ ...+..+++.+..|+..++
T Consensus 87 ~~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 87 VPQDRISRIHASSG-TTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp SCGGGCCEEEECCC-TTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred CChhHeEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 35677776554443 2333 34689999998888888888889999999999999863 3445567888999999998
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 265 IADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 265 l~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
+++ ...+++...+++.++.+++....
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps 191 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPS 191 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHH
Confidence 765 47888999999999999988764
No 47
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=89.24 E-value=2.7 Score=44.82 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=76.9
Q ss_pred CCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCcEEEec
Q 004825 190 SLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMN--VNSVVIYLAIVLAGYIVVSI 265 (728)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s--~~~vva~lA~lkaG~~~vpl 265 (728)
.++.+|.+.-..| .+|. .-.+|.+.+...+..+++.+...|+.++|++..+++-+ ...+..+++.+..|+..+++
T Consensus 90 ~~~~~~~i~~TSG-TTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 168 (443)
T 2y4o_A 90 PREQVVRVHASSG-TTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVPM 168 (443)
T ss_dssp CGGGCCEEEEECC-SSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEECC
T ss_pred ChhheEEEEECCC-CCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEEC
Confidence 4567775544432 2333 34689999998888888888889999999999999864 34455678888999999988
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 266 ADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 266 ~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
++. ..+++...+++.++.+++....
T Consensus 169 ~~~-~~~~~~~~i~~~~~t~l~~~Ps 193 (443)
T 2y4o_A 169 SGG-QTEKQVQLIRDFEPKIILVTPS 193 (443)
T ss_dssp CSC-CHHHHHHHHHHHCCSEEEECHH
T ss_pred CCC-CHHHHHHHHHHhCCcEEEECHH
Confidence 664 7888889999999999987764
No 48
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=88.77 E-value=2.3 Score=45.18 Aligned_cols=98 Identities=17% Similarity=0.051 Sum_probs=77.3
Q ss_pred CCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCC--CHHHHHHHHHHHHcCcEEEecCC
Q 004825 192 DDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPM--NVNSVVIYLAIVLAGYIVVSIAD 267 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~--s~~~vva~lA~lkaG~~~vpl~p 267 (728)
+.+|.+.-..| .+|. .-.+|.+.+...+..+++.+...|+.++|++..+++- ....+..+++.+..|+..++.++
T Consensus 86 ~~~a~i~~TSG-TTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~ 164 (436)
T 3qov_A 86 RDGVRIHSSSG-TTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAAA 164 (436)
T ss_dssp HHEEEEEECSC-SSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCCS
T ss_pred CCeEEEEECCC-cCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCCC
Confidence 77887665543 2333 3468999999999999999988999999999999875 34455677888999999998765
Q ss_pred CCCHHHHHHHHHhcCceEEEEecc
Q 004825 268 SFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
. .++++...+++.++.+++....
T Consensus 165 ~-~~~~~~~~i~~~~~t~~~~~P~ 187 (436)
T 3qov_A 165 G-NSKRQIKFISDFKTTALHAIPS 187 (436)
T ss_dssp C-CHHHHHHHHHHHTCCEEECCHH
T ss_pred C-CHHHHHHHHHHHCCCEEEECHH
Confidence 4 6788889999999999887764
No 49
>1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2
Probab=74.10 E-value=0.09 Score=55.97 Aligned_cols=100 Identities=9% Similarity=-0.047 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhcCC--CChhhH-----HHHHHhhcCCCCCCccchhheeeecccCCCCCCCccCC--------hhh-
Q 004825 27 AEQLHEKLAEIVNTHGA--ATPATW-----QNITTHILSPDLPFSFHQLLYYGCYKDFGPDPPAWIPD--------PEA- 90 (728)
Q Consensus 27 ~~~f~~~l~~~~~~~~~--~hq~~p-----fe~lv~~l~~~r~~~~~~~~f~~~~~~~~~~~~~~~~~--------~~~- 90 (728)
+.+|.++++++++...+ +||++| |+++++.+++. .+. +++|. ++...+ .....++ ...
T Consensus 297 ~~~~~~~l~~v~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~--~pl-~~~~~--n~~~~~-~~~~~~~~~~~~~~~~~~~ 370 (422)
T 1q9j_A 297 NTDIVDLASDIVATLRADLANGVIQQSGLHFGTAFEGTPPG--LPP-LVFCT--DATSFP-TMRTPPGLEIEDIKGQFYC 370 (422)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTHHHHSCCBGGGGGGCCCSS--SCC-CEEEE--CCCCCC-SCCCCTTCEEEEEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCeeeecccchHHHhcccCCC--CCc-eEEEe--cCCcCC-CCCCCCCceeEeeeccccc
Confidence 34788999999887766 999995 99999988743 222 33321 221100 0000000 011
Q ss_pred hhhccHHHH-HHHhccccccCCCCCCCCCHHHHHHHHhhCHHHHHHHHHHhc
Q 004825 91 AKVTNVGKL-LQTRGEEFLGSGYKDPISSFSNFQEFSVSNPEVYWKTVLNEM 141 (728)
Q Consensus 91 ~~~~~l~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~ti~~~~~~~~~~l~~~ 141 (728)
..++++.+. +...++++...+|+. + .+++++.++|.++|+++
T Consensus 371 ~~~~~l~~~~~~~~~~~l~~~~y~~-----~----~~~~~l~~~~~~~L~~l 413 (422)
T 1q9j_A 371 SISVPLDLYSCAVYAGQLIIEHHGH-----I----AEPGKSLEAIRSLLCTV 413 (422)
T ss_dssp BSSCCCCEEEEEEETTEEEEEEESS-----C----SSHHHHHHHHHHHHHHT
T ss_pred CCCCCceEEEEEeeCCeEEEEEecC-----c----cchHHHHHHHHHHHHHh
Confidence 335566655 444556665555777 4 88899999999999987
No 50
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=73.40 E-value=13 Score=38.13 Aligned_cols=100 Identities=9% Similarity=-0.039 Sum_probs=68.6
Q ss_pred CCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHHHHHHHHHcCcEEEec
Q 004825 190 SLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVVIYLAIVLAGYIVVSI 265 (728)
Q Consensus 190 ~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~--~~vva~lA~lkaG~~~vpl 265 (728)
.++.+|.+.-..| .+|. ...+|.+.+...+..+++.+...|+.++|++..++|-+. --....++++..|+.+++.
T Consensus 89 ~~~~~a~i~~TSG-TTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~~ 167 (369)
T 3hgu_A 89 PADSHPQVYESGG-TTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFSI 167 (369)
T ss_dssp CTTCCCEEEEECC----CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEECC
T ss_pred CccccEEEEECCC-CCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEECc
Confidence 4667676655543 2333 245799999888887777788889999999999998732 2334445558899966654
Q ss_pred CCCCCHH-----------------------HHHHHHHhcCceEEEEecce
Q 004825 266 ADSFASL-----------------------EISARLRISKAKAIFTQDLI 292 (728)
Q Consensus 266 ~p~~~~~-----------------------~l~~~l~~~~~~~il~~~~~ 292 (728)
+ ..+. ++...+++.++.+++.....
T Consensus 168 ~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~ 215 (369)
T 3hgu_A 168 D--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPV 215 (369)
T ss_dssp C--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHH
T ss_pred c--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHH
Confidence 3 3344 66668899999998887643
No 51
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=71.92 E-value=11 Score=41.40 Aligned_cols=100 Identities=14% Similarity=0.059 Sum_probs=72.1
Q ss_pred CCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCC
Q 004825 355 VEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS 431 (728)
Q Consensus 355 ~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~ 431 (728)
|+.+|.+.+..+.++ ..+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+..
T Consensus 34 p~~~a~~a~~~~~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~~ 108 (550)
T 3rix_A 34 ALVPGTIAFTDAHIE----VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF-FMPVLGALFIGVAVAPANDI 108 (550)
T ss_dssp HTSTTCEEEEETTTC----CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT-HHHHHHHHHHTCEEEECCTT
T ss_pred CCCceEEEeeecCCC----cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH-HHHHHHHHHcCCEEeecCCc
Confidence 355665544444333 467877664433 3334456999999998888866553 44567999999999998877
Q ss_pred CCcchHHHHHHHhCCcEEEecHHHHHHH
Q 004825 432 PLGSGFAKFVQDAKVTMLGVVPSIVRTW 459 (728)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (728)
....++...++..++.+++..+..+..+
T Consensus 109 ~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 136 (550)
T 3rix_A 109 YNERELLNSMNISQPTVVFVSKKGLQKI 136 (550)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGGHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEcHHHHHHH
Confidence 7778899999999999999887766554
No 52
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=66.56 E-value=58 Score=35.24 Aligned_cols=98 Identities=15% Similarity=0.006 Sum_probs=72.0
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HH-HHHHHHHcCcEEE
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS--VV-IYLAIVLAGYIVV 263 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~--vv-a~lA~lkaG~~~v 263 (728)
..|+.+|++.-..| .+|. .-.+|.+.+...+..... ..++.++|++..++|-+..+ .. .+++.+..|+..+
T Consensus 179 ~~~~d~a~i~~TSG-TTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 179 VKSSDVAFLQLSGG-STGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CCTTSEEEEEECCC-SSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CCcCceEEEEeCCC-cCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 46788888766543 2332 346899988776655544 34789999999998876443 33 5788999999988
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 264 SIADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 264 pl~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
..+ ...++.+...+++.++.++.....
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~ 281 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPP 281 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHH
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHH
Confidence 764 467888999999999999887764
No 53
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=65.92 E-value=55 Score=34.95 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=72.8
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCcEEEec
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS-VVIYLAIVLAGYIVVSI 265 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~-vva~lA~lkaG~~~vpl 265 (728)
..|+.+|.+.-..| .+|. .-.+|++.+...+..+.. ..|+.++|++..++|-...+ +..+++.+..|+..+..
T Consensus 160 ~~~~d~a~i~~TSG-TTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 160 FNLDDIASIMFTSG-TTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CCTTSEEEEEECCT-TTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCCeEEEEECCC-CCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46788888776553 2332 346899988776665544 45899999999998876433 33467788899998887
Q ss_pred CCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 266 ADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 266 ~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
+ ...++.+...+++.++..+.....
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~ 260 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQ 260 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHH
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHH
Confidence 5 477889999999999999988764
No 54
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=65.81 E-value=50 Score=35.80 Aligned_cols=98 Identities=15% Similarity=0.099 Sum_probs=71.8
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH---HHHHHHHcCcEEE
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVV---IYLAIVLAGYIVV 263 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv---a~lA~lkaG~~~v 263 (728)
..|+.+|++.-..| .+|. .-.+|.+.+...+..++.. .|+.++|++..++|-+..+-. .+++.+..|+..+
T Consensus 188 ~~~~d~a~i~~TSG-TTG~PKgv~~sh~~~~~~~~~~~~~---~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 188 TPADEVAFFQLSGG-STGTPKLIPRTHNDYDYSVRASAEI---CGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CCTTSEEEEEECCC---CCCCEEEEEHHHHHHHHHHHHHH---TTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CCccceEEEEECCC-cccCCceEEechHHHHHHHHHHHHH---hCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 45788888766543 2222 3468999988776665544 489999999999886654433 4788899999988
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 264 SIADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 264 pl~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
..+ ...+..+...+++.++..+.....
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~ 290 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPS 290 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHH
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechH
Confidence 775 457788888999999999888764
No 55
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=64.66 E-value=28 Score=37.94 Aligned_cols=98 Identities=11% Similarity=0.143 Sum_probs=71.5
Q ss_pred CCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH--HHHHHHHHHcCcEEEecCC
Q 004825 192 DDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS--VVIYLAIVLAGYIVVSIAD 267 (728)
Q Consensus 192 d~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~--vva~lA~lkaG~~~vpl~p 267 (728)
+.+|++.-..| .+|. .-.+|++.+...+......+...++.++|++..++|-+..+ ...+++.+ .|+..+.++
T Consensus 192 ~d~a~i~~TSG-TTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~- 268 (548)
T 2d1s_A 192 EQVALIMNSSG-STGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT- 268 (548)
T ss_dssp TCEEEEECCSS-CSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC-
T ss_pred CCEEEEEeCCC-CCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC-
Confidence 78888776553 2332 34689998877766555443336889999999988876543 33467777 999988775
Q ss_pred CCCHHHHHHHHHhcCceEEEEecce
Q 004825 268 SFASLEISARLRISKAKAIFTQDLI 292 (728)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~il~~~~~ 292 (728)
...++.+...+++.++.+++.....
T Consensus 269 ~~~~~~~~~~i~~~~~t~~~~~P~~ 293 (548)
T 2d1s_A 269 KFDEETFLKTLQDYKCTSVILVPTL 293 (548)
T ss_dssp CCCHHHHHHHHHHTTEEEEEECHHH
T ss_pred CCCHHHHHHHHHHcCCcEEEecHHH
Confidence 5778899999999999999887643
No 56
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=64.01 E-value=22 Score=38.31 Aligned_cols=95 Identities=16% Similarity=0.011 Sum_probs=71.2
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++. .+..+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+.
T Consensus 19 ~pd~~Al~~---------~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~ 88 (509)
T 3ivr_A 19 FPDRTAFMV---------DGVRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEM-IELIGAVALIGAILLPVNY 88 (509)
T ss_dssp STTSEEEEE---------TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEE---------CCcEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCCEEEecCC
Confidence 467777653 12468887765444 3334556899999999888876554 3456799999999999887
Q ss_pred CCCcchHHHHHHHhCCcEEEecHHHHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 458 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~ 458 (728)
....+++...+++.++.+++..+.....
T Consensus 89 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 116 (509)
T 3ivr_A 89 RLNADEIAFVLGDGAPSVVVAGTDYRDI 116 (509)
T ss_dssp TSCHHHHHHHHHHHCEEEEEECSTTHHH
T ss_pred CCCHHHHHHHHHhcCceEEEECcchhhh
Confidence 7677889999999999999988776554
No 57
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=62.66 E-value=26 Score=38.00 Aligned_cols=97 Identities=14% Similarity=0.035 Sum_probs=70.3
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHH---HHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++.. .+| -.+|.+.+... +.......++.++|++....+-+... +..+++.+..|+..+..+.
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~la~~~~Gav~vpl~~ 106 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEF-VLAFLGASHRGAIITAANP 106 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCEEeccCC
Confidence 4677776532 222 35777766443 33344557999999999888876554 3456799999999999887
Q ss_pred CCCcchHHHHHHHhCCcEEEecHHHHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 458 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~ 458 (728)
....+++...+++.++.++...+.....
T Consensus 107 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~ 134 (536)
T 3ni2_A 107 FSTPAELAKHAKASRAKLLITQACYYEK 134 (536)
T ss_dssp TCCHHHHHHHHHHHTEEEEEECGGGTHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEChHHHHH
Confidence 7777889999999999999887755443
No 58
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=61.58 E-value=42 Score=35.99 Aligned_cols=98 Identities=14% Similarity=0.031 Sum_probs=69.4
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++.. . .+..+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+.
T Consensus 15 ~p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 86 (504)
T 1t5h_X 15 APDHCALAVP---A----RGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADV-VIAILALHRLGAVPALLNP 86 (504)
T ss_dssp CTTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCC
Confidence 4567776542 1 13567887765443 3333457899999999888877654 3456799999999999987
Q ss_pred CCCcchHHHHHHHhCCcEEEe--cHHHHHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGV--VPSIVRTW 459 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~--~Ps~l~~l 459 (728)
....+++...+++.+++.+.. .+.....+
T Consensus 87 ~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 117 (504)
T 1t5h_X 87 RLKSAELAELIKRGEMTAAVIAVGRQVADAI 117 (504)
T ss_dssp TSCHHHHHHHHHHTTCSEEEECC--CHHHHH
T ss_pred ccChHHHHHHHhhcCCcEEEEecchhhhhhh
Confidence 767778999999999999888 55554443
No 59
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=58.91 E-value=56 Score=34.57 Aligned_cols=105 Identities=11% Similarity=0.014 Sum_probs=73.5
Q ss_pred CCCCceEEEecC--CCCCCCceEEecCcHHHHHHHHHH---HhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEe
Q 004825 354 PVEAFTNILFSS--GTTGEPKAIPWTNATPFKAAADAW---CHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY 428 (728)
Q Consensus 354 ~~~~~a~iiyTS--GSTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~ 428 (728)
.|+.+|++.... +.+| ....+|.+.+...+.... ...+. ++|++....+-+... +..+++.+..|+..+.+
T Consensus 37 ~pd~~Al~~~~~~~~~~g--~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~-~~~~lA~~~~G~v~vpl 112 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDG--VAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEY-VVAFLGALQAGRIAVPL 112 (480)
T ss_dssp STTSEEEEEEETTTCTTC--EEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEE
T ss_pred CCCCceEEEecccCCCCC--ceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHH-HHHHHHHHHhCcEEEee
Confidence 467787765442 2222 336788887755444443 34565 899998887766554 34567999999999988
Q ss_pred CC---CCCcchHHHHHHHhCCcEEEecHHHHHHHHcC
Q 004825 429 NG---SPLGSGFAKFVQDAKVTMLGVVPSIVRTWKST 462 (728)
Q Consensus 429 ~~---~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l~~~ 462 (728)
+. ....+++...+++.++.+++..+.....+...
T Consensus 113 ~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~ 149 (480)
T 3t5a_A 113 SVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQH 149 (480)
T ss_dssp CSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHT
T ss_pred CCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHH
Confidence 65 33457899999999999999998877766543
No 60
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=56.77 E-value=35 Score=37.09 Aligned_cols=103 Identities=14% Similarity=-0.014 Sum_probs=72.7
Q ss_pred CCCCceEEEecCC-CCCCCceEEecCcHHHH---HHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeC
Q 004825 354 PVEAFTNILFSSG-TTGEPKAIPWTNATPFK---AAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 429 (728)
Q Consensus 354 ~~~~~a~iiyTSG-STG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~ 429 (728)
.|+.+|++....+ ..+. .-.+|.+.+.. .+.......++.++|++....+-+... +..+++.+..|+..+.++
T Consensus 32 ~p~~~A~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~ 108 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPSEF--PESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDY-VMTIYALWRVAATPVPIN 108 (549)
T ss_dssp HTTSEEEEEESSCCCCSS--CSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEeCCCcccccc--cceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHhCCEEEccC
Confidence 3577776654321 1121 24567766544 334444557999999999888876554 345679999999999988
Q ss_pred CCCCcchHHHHHHHhCCcEEEecHHHHHHH
Q 004825 430 GSPLGSGFAKFVQDAKVTMLGVVPSIVRTW 459 (728)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (728)
.....+++...+++.+++++...+.....+
T Consensus 109 ~~~~~~~l~~il~~~~~~~~i~~~~~~~~~ 138 (549)
T 3g7s_A 109 PMYKSFELEHILNDSEATTLVVHSMLYENF 138 (549)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEEGGGHHHH
T ss_pred CCCCHHHHHHHHHhcCCCEEEEChHHHHHH
Confidence 776778899999999999999887766554
No 61
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=56.32 E-value=46 Score=36.55 Aligned_cols=95 Identities=15% Similarity=0.055 Sum_probs=69.8
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHH---HHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++.... .| ....+|.+.+... ++......+++++|++...++-+... +..+++.+..|+..+..+.
T Consensus 69 ~pd~~Al~~~~~--~g--~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~-~~~~lA~~~~Gav~vpl~~ 143 (580)
T 3etc_A 69 SPEKLAMIWCDD--YG--NEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDF-WYCMLGLHKLGAIAVPATH 143 (580)
T ss_dssp CTTCEEEEEEES--SS--CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCEEEEEEcC--CC--CEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHhCCEEEEeCCc
Confidence 578888776532 12 2456787766443 34444567999999999888876654 3456789999999998887
Q ss_pred CCCcchHHHHHHHhCCcEEEecH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVP 453 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
.....++...+++.++.+++..+
T Consensus 144 ~~~~~~l~~~l~~~~~~~ii~~~ 166 (580)
T 3etc_A 144 MLKTRDIVYRIEKAGLKMIVCIA 166 (580)
T ss_dssp TCCHHHHHHHHHHHTCCEEEEES
T ss_pred cCCHHHHHHHHHhcCCCEEEEec
Confidence 66777899999999999988754
No 62
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=55.83 E-value=37 Score=36.65 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=68.6
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++.. +..+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+.
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 105 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVAL-PVAFLGALYAGVVPVVANT 105 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHH-HHHHHHHHHHTCEEEECCT
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHcCceEEecCc
Confidence 4567776521 1357777664433 3334557899999999888877654 3456799999999998887
Q ss_pred CCCcchHHHHHHHhCCcEEEecHHHHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVPSIVRT 458 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~ 458 (728)
.....++...+++.++.+++..+.....
T Consensus 106 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~ 133 (529)
T 2v7b_A 106 LLTPADYVYMLTHSHARAVIASGALVQN 133 (529)
T ss_dssp TCCHHHHHHHHHHHTCSEEEEEGGGHHH
T ss_pred ccCHHHHHHHHhccCCeEEEechhhhhH
Confidence 6677789999999999999887765443
No 63
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=55.65 E-value=34 Score=37.18 Aligned_cols=100 Identities=15% Similarity=-0.014 Sum_probs=71.8
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++....+ .+..+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 104 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRH-LEAYFAVPGMGAVLHTANP 104 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHhcCcEEEecCc
Confidence 4566776543211 24567877665433 3334557899999999888876554 3456789999999999887
Q ss_pred CCCcchHHHHHHHhCCcEEEecHHHHHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVPSIVRTW 459 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (728)
....+++...+++.++.+++..+.....+
T Consensus 105 ~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 105 RLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred ccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 66777899999999999999887765543
No 64
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=54.17 E-value=50 Score=36.18 Aligned_cols=99 Identities=11% Similarity=0.068 Sum_probs=72.8
Q ss_pred CCCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHH--HHHHHHHcCcEEE
Q 004825 188 KRSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNSVV--IYLAIVLAGYIVV 263 (728)
Q Consensus 188 ~~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vv--a~lA~lkaG~~~v 263 (728)
...|+.+|++.-..| .+|. .-.+|++.+...+..++. ..++.++|++..++|-+..+-. .+++.+..|+..+
T Consensus 163 ~~~~~d~a~i~~TSG-TTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v 238 (590)
T 3kxw_A 163 SIKSNDIAFLQYTSG-STMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAI 238 (590)
T ss_dssp CCCTTSEEEEEECSS-CSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEE
T ss_pred CCCCCCeEEEEeCcC-CCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEE
Confidence 346788888776553 2332 356899998877666554 4589999999999998865543 3788899999998
Q ss_pred ecCCCC---CHHHHHHHHHhcCceEEEEec
Q 004825 264 SIADSF---ASLEISARLRISKAKAIFTQD 290 (728)
Q Consensus 264 pl~p~~---~~~~l~~~l~~~~~~~il~~~ 290 (728)
..++.. .++.+...+++.++.++.+..
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p 268 (590)
T 3kxw_A 239 MMSPFSFLQNPLSWLKHITKYKATISGSPN 268 (590)
T ss_dssp ECCHHHHHHCTHHHHHHHHHHTCSEEEECT
T ss_pred EeCHHHHHHCHHHHHHHHHHhCCeeecCCh
Confidence 876532 567788888999999877654
No 65
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=53.74 E-value=44 Score=35.89 Aligned_cols=99 Identities=13% Similarity=0.060 Sum_probs=71.3
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCcEEEec
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS-VVIYLAIVLAGYIVVSI 265 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~-vva~lA~lkaG~~~vpl 265 (728)
..|+.+|++.-..| .+|. .-.+|++.+...+...+. ..++.++|++..++|-+..+ +..+++.+..|+..+.+
T Consensus 141 ~~~~d~a~i~~TSG-TTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 141 VKGDENFYIIYTSG-STGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCCeEEEEECCC-CCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 45778887765543 2332 246899888766655443 45899999999999876533 44578889999999988
Q ss_pred CCC--CCHHHHHHHHHhcCceEEEEecc
Q 004825 266 ADS--FASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 266 ~p~--~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
++. ..++.+...+++.++.++.....
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 244 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPS 244 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHH
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHH
Confidence 653 56788888999999999887764
No 66
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=52.68 E-value=74 Score=34.07 Aligned_cols=99 Identities=8% Similarity=0.024 Sum_probs=72.0
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCcEEEec
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS-VVIYLAIVLAGYIVVSI 265 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~-vva~lA~lkaG~~~vpl 265 (728)
..++.+|++.-..| .+|. .-.+|.+.+...+..++. ..++.++|++..++|-+..+ +..+++++..|+..+.+
T Consensus 140 ~~~~~~a~i~~TSG-TTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 140 VKEHETFYIIYTSG-STGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CCTTSEEEEEEECC-TTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCCeEEEEECCC-CCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35678887765543 2333 346899888776655443 45889999999999876533 44578889999998877
Q ss_pred CCC--CCHHHHHHHHHhcCceEEEEecc
Q 004825 266 ADS--FASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 266 ~p~--~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
+.. ..++.+...+++.++.+++....
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~ 243 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPS 243 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHH
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHH
Confidence 653 46778888999999999888764
No 67
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=51.91 E-value=1.1e+02 Score=33.84 Aligned_cols=98 Identities=13% Similarity=0.003 Sum_probs=70.4
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCH--HHHH-HHHHHHHcCcEEE
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNV--NSVV-IYLAIVLAGYIVV 263 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~--~~vv-a~lA~lkaG~~~v 263 (728)
..|+.+|.+.-..| .+|. .-.+|.+.+...+...... .++.++|++..++|-+. .+.+ .+++.+..|+..+
T Consensus 181 ~~~~~~a~ii~TSG-STG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v 256 (617)
T 3rg2_A 181 SPADEVAYFQLSGG-TTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256 (617)
T ss_dssp CCTTSEEEEEECCC-SSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred CCCCCeEEEEECCC-cCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence 35688887765543 2332 3568998887666555444 47899999999988554 4433 4788889999988
Q ss_pred ecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 264 SIADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 264 pl~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
..+. .....+...+++.++.++.....
T Consensus 257 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~ 283 (617)
T 3rg2_A 257 LAAD-PSATLCFPLIEKHQVNVTALVPP 283 (617)
T ss_dssp ECSS-CCHHHHHHHHHHTTCCEEEECHH
T ss_pred EeCC-CCHHHHHHHHHHhCCcEEEcchH
Confidence 7654 56778888999999998887764
No 68
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=50.58 E-value=50 Score=35.53 Aligned_cols=96 Identities=17% Similarity=0.031 Sum_probs=69.5
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++.. | +...+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+.
T Consensus 29 ~p~~~A~~~~--~-----~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~ 100 (517)
T 3r44_A 29 SPRLQAYVEP--S-----TDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEF-CCLFYGAAKLGAVAVPINT 100 (517)
T ss_dssp STTSEEEEEG--G-----GTEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCCeEEEeC--C-----cCceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHH-HHHHHHHHHhCcEEEecCc
Confidence 4577776542 1 22467877665443 3444557999999999888876554 3456799999999999887
Q ss_pred CCCcchHHHHHHHhCCcEEEecHHHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVPSIVR 457 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~ 457 (728)
....+++...+++.++.++...+....
T Consensus 101 ~~~~~~l~~~l~~~~~~~vi~~~~~~~ 127 (517)
T 3r44_A 101 RLAAPEVSFILSDSGSKVVIYGAPSAP 127 (517)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred ccCHHHHHHHHHhcCceEEEECCchHH
Confidence 667778999999999999987665433
No 69
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=49.67 E-value=47 Score=36.37 Aligned_cols=101 Identities=9% Similarity=-0.012 Sum_probs=71.8
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHHH---HHHHhc-CCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAAA---DAWCHM-DIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 429 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~~---~~~~~~-~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~ 429 (728)
.|+.+|++.... .| ....+|.+.+...+. ...... +++++|++....+-+... +..+++.+..|+..+..+
T Consensus 56 ~p~~~al~~~~~--~g--~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Ga~~vpl~ 130 (570)
T 3c5e_A 56 RPPSPALWWVNG--KG--KELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEW-WLVILGCIRAGLIFMPGT 130 (570)
T ss_dssp SCCCEEEEEECS--SS--CEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCHHH-HHHHHHHHHHTCEEEECC
T ss_pred CCCceEEEEEcC--CC--ceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCeEEEecC
Confidence 457777664421 12 235678776654433 333444 899999999888877654 345679999999999888
Q ss_pred CCCCcchHHHHHHHhCCcEEEecHHHHHHH
Q 004825 430 GSPLGSGFAKFVQDAKVTMLGVVPSIVRTW 459 (728)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (728)
.....+++...+++.++.+++..+.....+
T Consensus 131 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 160 (570)
T 3c5e_A 131 IQMKSTDILYRLQMSKAKAIVAGDEVIQEV 160 (570)
T ss_dssp TTCCHHHHHHHHHHHTCSEEEEETTTHHHH
T ss_pred CCCCHHHHHHHHHhcCCeEEEechHHHHHH
Confidence 766677899999999999999887665544
No 70
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=46.62 E-value=62 Score=35.30 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=69.9
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++. . +-.+|.+.+...+ .......+++++|++....+-+... +..+++.+..|+..+..+.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~-~~~~lA~~~~Gav~vpl~~ 121 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDL-FIGILAVLKAGGAYVPIDI 121 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEEeCC
Confidence 456777652 1 2357877665433 3333456899999998888876554 3456799999999999887
Q ss_pred CCCcchHHHHHHHhCCcEEEecHHHHHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVPSIVRTW 459 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l~~l 459 (728)
....+++...+++.++.+++..+.....+
T Consensus 122 ~~~~~~l~~il~~~~~~~li~~~~~~~~~ 150 (563)
T 1amu_A 122 EYPKERIQYILDDSQARMLLTQKHLVHLI 150 (563)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CCcHHHHHHHHHhcCCCEEEEcCchhhhh
Confidence 66777899999999999999888655443
No 71
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=45.92 E-value=59 Score=34.78 Aligned_cols=94 Identities=17% Similarity=0.069 Sum_probs=67.6
Q ss_pred CCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCC
Q 004825 355 VEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGS 431 (728)
Q Consensus 355 ~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~ 431 (728)
++.++.++...+ +-.+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+..
T Consensus 14 p~~~a~~~~~~~------~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~Ga~~vpl~~~ 86 (503)
T 4fuq_A 14 DDPHKLAIETAA------GDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEA-LVLYLATVRAGGVYLPLNTA 86 (503)
T ss_dssp SCTTSEEEEETT------CCEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHH-HHHHHHHHHTTCEEEECCTT
T ss_pred CCCceEEEecCC------CcEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHH-HHHHHHHHHcCcEEEecCCC
Confidence 445555554322 2357777665443 3334556899999999888877554 34567999999999998877
Q ss_pred CCcchHHHHHHHhCCcEEEecHHH
Q 004825 432 PLGSGFAKFVQDAKVTMLGVVPSI 455 (728)
Q Consensus 432 ~~~~~l~~~i~~~~vt~l~~~Ps~ 455 (728)
...+++...+++.++.++...+..
T Consensus 87 ~~~~~l~~il~~~~~~~vi~~~~~ 110 (503)
T 4fuq_A 87 YTLHELDYFITDAEPKIVVCDPSK 110 (503)
T ss_dssp CCHHHHHHHHHHHCCSEEEECGGG
T ss_pred CCHHHHHHHHHhcCCcEEEECchh
Confidence 677789999999999999987653
No 72
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=45.13 E-value=52 Score=36.82 Aligned_cols=97 Identities=14% Similarity=0.044 Sum_probs=70.5
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHH---HHHHHH-hcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWC-HMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYN 429 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~---~~~~~~-~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~ 429 (728)
.++.+|++.. +..+| .+..+|.+.+... ++.... ..+++++|++..+++-+... +..+++.+..|+..+.++
T Consensus 95 ~pd~~Al~~~-~~~~~--~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~-v~a~lA~~~~Gav~vpl~ 170 (663)
T 1ry2_A 95 TPNKKAIIFE-GDEPG--QGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEA-IITLLAISRIGAIHSVVF 170 (663)
T ss_dssp CTTSEEEEEE-CSSTT--CCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHH-HHHHHHHHHTTCEEEECC
T ss_pred CCCceEEEEE-cCCCC--ceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCCEEEeeC
Confidence 4677776643 22222 2346787766443 333444 67899999999998877664 345679999999999988
Q ss_pred CCCCcchHHHHHHHhCCcEEEecHH
Q 004825 430 GSPLGSGFAKFVQDAKVTMLGVVPS 454 (728)
Q Consensus 430 ~~~~~~~l~~~i~~~~vt~l~~~Ps 454 (728)
....++++...|++.++.++++...
T Consensus 171 ~~~~~~~l~~~l~~~~~~~li~~~~ 195 (663)
T 1ry2_A 171 AGFSSNSLRDRINDGDSKVVITTDE 195 (663)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESB
T ss_pred CCCCHHHHHHHHHhcCCeEEEEccc
Confidence 7777788999999999999988654
No 73
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=42.54 E-value=1.7e+02 Score=31.06 Aligned_cols=97 Identities=15% Similarity=0.092 Sum_probs=69.0
Q ss_pred CCCCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHH--HHHHHHHHHHcCcEEEe
Q 004825 189 RSLDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVN--SVVIYLAIVLAGYIVVS 264 (728)
Q Consensus 189 ~~pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~--~vva~lA~lkaG~~~vp 264 (728)
..|+.+|++.-..| .+|. .-.+|.+.+...+..++..+ ++.++|++...+|-... ++..+++.+..|+..+.
T Consensus 152 ~~~~d~a~i~~TSG-TTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 152 ADDGDPALVVYTSG-TTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CCTTSEEEEEEECC-SSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCCeEEEEeCCC-CcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 45778888765543 2333 35689999888777666554 78899999988886543 34457889999999887
Q ss_pred cCCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 265 IADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 265 l~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
.+ ....+.+...+ +.++..++....
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~ 252 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPT 252 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHH
Confidence 74 56667766666 668888777654
No 74
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=40.85 E-value=64 Score=35.99 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=69.0
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.++.+|++.. +..+| .+..+|.+.+...+ .......+++++|++..+++-+... +..+++.+..|+..+.++.
T Consensus 89 ~pd~~Al~~~-~~~~~--~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~-vva~lA~~~~Gav~vpl~~ 164 (652)
T 1pg4_A 89 NGDRTAIIWE-GDDTS--QSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEA-AVAMLACARIGAVHSVIFG 164 (652)
T ss_dssp HTTSEEEEEE-CSSTT--CEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHH-HHHHHHHHHHTCEEEECCT
T ss_pred CCCceEEEEE-cCCCC--ceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHcCcEEEecCC
Confidence 3567776543 22222 23567877665443 3334557999999999988877664 3456799999999999887
Q ss_pred CCCcchHHHHHHHhCCcEEEecH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVP 453 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
...++++...|++.++.++++..
T Consensus 165 ~~~~~~l~~~l~~~~~~~li~~~ 187 (652)
T 1pg4_A 165 GFSPEAVAGCIIDSSSRLVITAD 187 (652)
T ss_dssp TSCHHHHHHHHHHHTCSEEEEES
T ss_pred CCCHHHHHHHHHhcCCCEEEEcC
Confidence 77778899999999999888754
No 75
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=40.71 E-value=78 Score=34.48 Aligned_cols=92 Identities=15% Similarity=0.108 Sum_probs=67.7
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++. . +-.+|.+.+...+ .......++.++|++...++-+... +..+++.+..|+..+..+.
T Consensus 88 ~pd~~A~~~-~--------~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~ 157 (570)
T 4gr5_A 88 APDAVALLH-E--------ADELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDM-VVALLAVLKAGGGYTMLDP 157 (570)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEC-C--------CCcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHHCCEEEEcCC
Confidence 457777653 1 2357777664433 3334557899999999888877654 3456799999999999887
Q ss_pred CCCcchHHHHHHHhCCcEEEecHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVPSI 455 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~ 455 (728)
....+++...+++.++.++......
T Consensus 158 ~~~~~~l~~~l~~~~~~~~i~~~~~ 182 (570)
T 4gr5_A 158 QFPVERLALSLEDTGAPLLVTSRPL 182 (570)
T ss_dssp TSCHHHHHHHHHHHTCSEEEECTTT
T ss_pred CChHHHHHHHHHhcCCCEEEecchh
Confidence 7777889999999999999887654
No 76
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=39.34 E-value=82 Score=37.09 Aligned_cols=95 Identities=15% Similarity=0.024 Sum_probs=69.7
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHHH---HHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFKA---AADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++.. .+| ..+|.+.+... +.......++.++|++....+-+... +..+++.+..|+..+..+.
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~ns~e~-~v~~lA~~~~Ga~~vpl~~ 145 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLGVNQNDVVMLLLPNCPEF-VLSFLAASFRGATATAANP 145 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECSSCHHH-HHHHHHHHHHTCEEEEECT
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCcCEEEEEeCCCHHH-HHHHHHHHHcCCEEEeeCC
Confidence 4677876532 222 45777765443 33344557999999999888877543 3456799999999999987
Q ss_pred CCCcchHHHHHHHhCCcEEEecHHHH
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVVPSIV 456 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~Ps~l 456 (728)
...++++...+++.++.+++..+...
T Consensus 146 ~~~~~~l~~~l~~~~~~~vi~~~~~~ 171 (979)
T 3tsy_A 146 FFTPAEIAKQAKASNTKLIITEARYV 171 (979)
T ss_dssp TSCHHHHHHHHHHHTEEEEEECSTTT
T ss_pred CCCHHHHHHHHHHcCCeEEEEChHHH
Confidence 77778899999999999998876543
No 77
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=37.50 E-value=1.2e+02 Score=30.55 Aligned_cols=66 Identities=24% Similarity=0.228 Sum_probs=45.7
Q ss_pred HHHHcCC-CCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecc
Q 004825 226 ALNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 226 ~L~~~Gv-~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
.+.+.|. ++|+.|.|....+-.-...-+++.+.|.-++.+-|...+..-..+++..+++++++...
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3445564 88888655556677777777778888987665555444444456778999999998753
No 78
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=34.60 E-value=1e+02 Score=30.82 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCCCCEEEEEcCCCH------HHHHHHHHHH-HcCcEEEecCCC---------CCH---HHHHHHHHhcCceEEEEecc
Q 004825 231 GLDKGSAIAIDMPMNV------NSVVIYLAIV-LAGYIVVSIADS---------FAS---LEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 231 Gv~~gd~Vai~~~~s~------~~vva~lA~l-kaG~~~vpl~p~---------~~~---~~l~~~l~~~~~~~il~~~~ 291 (728)
-+++||+|+|++|.+. +.+-.-+..+ ..|.-++.-..- .+. +.+..++.|-.+++|++..+
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999863 2333333333 346665543221 122 34667788899999999988
Q ss_pred eecCCcccchH
Q 004825 292 IIRGDKSIPLY 302 (728)
Q Consensus 292 ~~~~~~~~~~~ 302 (728)
.+...+.++..
T Consensus 88 G~g~~rlL~~L 98 (327)
T 4h1h_A 88 GFNSNQLLPYL 98 (327)
T ss_dssp CSCGGGGGGGC
T ss_pred chhHHHHhhhc
Confidence 77666666654
No 79
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=34.50 E-value=1.2e+02 Score=32.73 Aligned_cols=86 Identities=10% Similarity=-0.031 Sum_probs=62.6
Q ss_pred eEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCC-------cchHHHHHH
Q 004825 373 AIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPL-------GSGFAKFVQ 442 (728)
Q Consensus 373 gV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~-------~~~l~~~i~ 442 (728)
+-.+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+.... ..++...++
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~ 125 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIAETSSEF-VEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLA 125 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEECCSSHHH-HHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHH-HHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHH
Confidence 3567877765444 3334557899999999888877654 3456799999999998865433 356888899
Q ss_pred HhCCcEEEecHHHHHHH
Q 004825 443 DAKVTMLGVVPSIVRTW 459 (728)
Q Consensus 443 ~~~vt~l~~~Ps~l~~l 459 (728)
..++..+.........+
T Consensus 126 ~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 126 SCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHCCSEEEECGGGHHHH
T ss_pred hcCCCEEEecHHHHHHH
Confidence 99999999887655543
No 80
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=33.37 E-value=1.4e+02 Score=26.73 Aligned_cols=72 Identities=13% Similarity=0.199 Sum_probs=44.3
Q ss_pred HHHHHHHHhcCCCCeeeeEEEe-ecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCCCcccceEEECCC
Q 004825 624 SVEIERICNAVDSNVLETAAIG-VPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNPLFKVSHVVPLPS 701 (728)
Q Consensus 624 ~~eIE~~l~~~~p~V~~~~Vv~-~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~~~~P~~i~~v~~ 701 (728)
=+|+++.|. ..++|..|-|.. .++........-.++..++ |. ..+... . .|++.+....|. +-|..+.+++.
T Consensus 92 egELartI~-~i~~V~~ARVhl~lP~~~~~~~sASV~l~~~~-g~-~l~~~q-~-~I~~LVa~SV~g-L~~enVtVvdq 164 (171)
T 1yj7_A 92 EQDIERLLS-KIPGVIDCSVSLNVNNNESQPSSAAVLVISSP-EV-NLAPSV-I-QIKNLVKNSVDD-LKLENISVVIK 164 (171)
T ss_dssp HHHHHHHHT-TSTTEEEEEEEEEC-------CEEEEEEEECT-TC-CCGGGH-H-HHHHHHHHHSTT-CCGGGEEEEEE
T ss_pred HHHHHHHHH-cCCCeeEEEEEEECCCCCCCCceEEEEEEeCC-CC-CCcHhH-H-HHHHHHHHhcCC-CCcccEEEEeC
Confidence 578999994 999999998844 4443222122333444555 55 455554 3 588888888886 66777777653
No 81
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=32.75 E-value=81 Score=33.79 Aligned_cols=79 Identities=10% Similarity=-0.066 Sum_probs=59.1
Q ss_pred EEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCCCCCcchHHHHHHHhCCcEEE
Q 004825 374 IPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNGSPLGSGFAKFVQDAKVTMLG 450 (728)
Q Consensus 374 V~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~ 450 (728)
-.+|.+.+...+ .......++.++|++....+-+... +..+++.+..|+..+..+.....+++...+++.++.+++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii 106 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDM-LATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSLII 106 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHH-HHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEE
T ss_pred CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCEEE
Confidence 347777665443 3344557899999988877766543 345678999999999888766778899999999999888
Q ss_pred ecH
Q 004825 451 VVP 453 (728)
Q Consensus 451 ~~P 453 (728)
...
T Consensus 107 ~~~ 109 (521)
T 3l8c_A 107 AIE 109 (521)
T ss_dssp ESS
T ss_pred ecC
Confidence 654
No 82
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=31.48 E-value=1.2e+02 Score=31.03 Aligned_cols=64 Identities=14% Similarity=0.022 Sum_probs=42.7
Q ss_pred HHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCC-----CCHHHHHHHHHhcC--ceEEEEec
Q 004825 224 AYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS-----FASLEISARLRISK--AKAIFTQD 290 (728)
Q Consensus 224 A~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~-----~~~~~l~~~l~~~~--~~~il~~~ 290 (728)
...|...++++||.|.+..+...... -++...|+.++.++.+ ...+.+...+...+ .++|+...
T Consensus 67 ~~al~~l~~~~Gd~Vi~~~~~~~~~~---~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~ 137 (377)
T 3ju7_A 67 MAAIQLKKRKKGKYALMPSFTFPATP---LAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA 137 (377)
T ss_dssp HHHHHHHSCTTCCEEEEESSSCTHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC
T ss_pred HHHHHHcCCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC
Confidence 34455567899999988877665543 3456789876655432 46788888775445 77777543
No 83
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=29.94 E-value=1.2e+02 Score=22.68 Aligned_cols=46 Identities=13% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 004825 624 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAV 683 (728)
Q Consensus 624 ~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l 683 (728)
..++++.| +.+|+|.+|..+.- +..+++.+..+ +.+++.+.+.+.+
T Consensus 15 ~~~~~~~l-~~~peV~~~~~vtG------~~d~l~~v~~~-------d~~~l~~~~~~~l 60 (83)
T 2zbc_A 15 EDEVFERL-KSMSEVTEVHVVYG------VYDIVVKVEAD-------SMDKLKDFVTNTI 60 (83)
T ss_dssp HHHHHHHH-TTCTTEEEEEECSS------SCSEEEEEECS-------SHHHHHHHHHHTG
T ss_pred HHHHHHHH-hCCCCeEEEEEEec------cCCEEEEEEEC-------CHHHHHHHHHHHh
Confidence 37889999 59999999987642 13455555543 4566666544333
No 84
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=28.22 E-value=2.3e+02 Score=28.59 Aligned_cols=66 Identities=9% Similarity=-0.048 Sum_probs=40.0
Q ss_pred HHHHHHHc-CCCCCCEEEEEcCCCH-HHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEe
Q 004825 223 VAYALNAL-GLDKGSAIAIDMPMNV-NSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQ 289 (728)
Q Consensus 223 lA~~L~~~-Gv~~gd~Vai~~~~s~-~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~ 289 (728)
+...|.+. |... +.+.++...+. .+..++.++++-|-..+..++.++.......++..+.+++...
T Consensus 51 ~~~~la~~~~~~~-~~~v~~~~sgt~al~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~ 118 (411)
T 3nnk_A 51 VMALYRGVFRTEN-RWTMLVDGTSRAGIEAILVSAIRPGDKVLVPVFGRFGHLLCEIARRCRAEVHTIE 118 (411)
T ss_dssp HHHHHHHHHTCCC-SEEEEEESCHHHHHHHHHHHHCCTTCEEEEEECSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhCCCC-CcEEEECCCcHHHHHHHHHHhcCCCCEEEEecCCchHHHHHHHHHHcCCeEEEEe
Confidence 33344333 5554 34444555544 4445555666677777777788877667777788888776654
No 85
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=28.15 E-value=1.4e+02 Score=30.57 Aligned_cols=72 Identities=13% Similarity=0.041 Sum_probs=46.7
Q ss_pred CCCCCCEEEEEcCCCHH------HHHHHHHHHH-cCcEEEecCC---------CCCHH---HHHHHHHhcCceEEEEecc
Q 004825 231 GLDKGSAIAIDMPMNVN------SVVIYLAIVL-AGYIVVSIAD---------SFASL---EISARLRISKAKAIFTQDL 291 (728)
Q Consensus 231 Gv~~gd~Vai~~~~s~~------~vva~lA~lk-aG~~~vpl~p---------~~~~~---~l~~~l~~~~~~~il~~~~ 291 (728)
-+++||+|+|++|.+.- .+-.-+..++ .|..++.-+. +.+.+ .|..++.|-.+++|++..+
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 68899999999999842 2333334443 5766654322 11233 3556777888999999988
Q ss_pred eecCCcccchH
Q 004825 292 IIRGDKSIPLY 302 (728)
Q Consensus 292 ~~~~~~~~~~~ 302 (728)
.+...+.++..
T Consensus 119 Gyga~rlLp~L 129 (371)
T 3tla_A 119 GDNSNSLLPFL 129 (371)
T ss_dssp CSCGGGGGGGS
T ss_pred cccHHHHHhhc
Confidence 76655555544
No 86
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=28.03 E-value=1.5e+02 Score=29.80 Aligned_cols=93 Identities=11% Similarity=0.022 Sum_probs=58.4
Q ss_pred CCCeEEEEeccCCCCCC--ceeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHH-HHHHHHHHHcCcEEEecCC
Q 004825 191 LDDIVIRWCDEGDGGLP--VKSMTLKELRAEVWLVAYALNALGLDKGSAIAIDMPMNVNS-VVIYLAIVLAGYIVVSIAD 267 (728)
Q Consensus 191 pd~~Al~~~~~~~~~~~--~~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~Vai~~~~s~~~-vva~lA~lkaG~~~vpl~p 267 (728)
.|.+|++.-..| .+|. .-.+|++.|...+..++. ..+++++|++..++|-+... +..++..+..|+..+..++
T Consensus 36 ~d~~a~Il~TSG-TTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~~ 111 (358)
T 4gs5_A 36 GGAREFVLHTSG-STGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTEP 111 (358)
T ss_dssp HTCSEEEEEEEC-TTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEECC
T ss_pred CCCCEEEEECCc-ccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecCc
Confidence 466777654442 2333 246899998776665554 35899999999999876433 3345556677877776665
Q ss_pred CCCHHHHHHHHHhcCceEEEEec
Q 004825 268 SFASLEISARLRISKAKAIFTQD 290 (728)
Q Consensus 268 ~~~~~~l~~~l~~~~~~~il~~~ 290 (728)
.... ...+++.++..+....
T Consensus 112 ~~~~---~~~i~~~~~t~~~~~P 131 (358)
T 4gs5_A 112 TANP---LAGLDHADFDFVAMVP 131 (358)
T ss_dssp CSCT---TTTCSSCCCSEEEECH
T ss_pred cccH---HHHHHHhCCeEEEcCh
Confidence 4322 2345566666665544
No 87
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=26.86 E-value=2.5e+02 Score=28.44 Aligned_cols=73 Identities=5% Similarity=-0.192 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHc-CCCCCCEEEEEcCCCHH-HHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 004825 217 RAEVWLVAYALNAL-GLDKGSAIAIDMPMNVN-SVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (728)
Q Consensus 217 ~~~a~~lA~~L~~~-Gv~~gd~Vai~~~~s~~-~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 290 (728)
.+....+...|.+. |..+ +.+.++..++.+ +..++.++++-|-..+..++.++.......++..+.+++...-
T Consensus 43 ~~~~~~l~~~la~~~g~~~-~~~~~~~~s~t~al~~~~~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~ 117 (416)
T 3isl_A 43 TGIMNETMEMLRELFQTKN-RWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLEC 117 (416)
T ss_dssp HHHHHHHHHHHHHHTTCCC-SEEEEEESCHHHHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCC-CcEEEecCcHHHHHHHHHHHhcCCCCEEEEecCCcccHHHHHHHHhcCCeeEEEec
Confidence 33344555555543 6544 445545555534 4445555666676666667777766677778888888776653
No 88
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=26.84 E-value=2.5e+02 Score=28.36 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=42.8
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE--ecCCC--CCHHHHHHHHHhcCceEEEEecceecCCcccchH
Q 004825 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVV--SIADS--FASLEISARLRISKAKAIFTQDLIIRGDKSIPLY 302 (728)
Q Consensus 232 v~~gd~Vai~~~~s~~~vva~lA~lkaG~~~v--pl~p~--~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~~ 302 (728)
+++||.|.+..+...... ..-++...|+.++ |++++ ...+.+...++..++++|+.....-..+...+..
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~ 156 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLK 156 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCH
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHH
Confidence 679999988876544311 2223455676555 44443 3678899888866778887776443344444433
No 89
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=26.62 E-value=2.2e+02 Score=28.59 Aligned_cols=70 Identities=20% Similarity=0.227 Sum_probs=49.7
Q ss_pred HHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 004825 221 WLVAYALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (728)
Q Consensus 221 ~~lA~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 290 (728)
+.+.....+.-+++|.+..|+...+-.-+..-+++.+.|.-++.+-|...+..-...++..++++++++.
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~ 141 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDP 141 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECC
Confidence 3344433333367887777787778777888888888998776666655555556678899999999865
No 90
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=25.82 E-value=2.1e+02 Score=26.52 Aligned_cols=82 Identities=15% Similarity=-0.002 Sum_probs=47.5
Q ss_pred chhhhHHHHHHHh-hhCcEEEEeCCCCCcchHHHHHHHhCCcEEEe------cHHH--HHHHHcCCCCCCCCCcCeeEEE
Q 004825 407 GWMMGPWLVYASL-LNGASIALYNGSPLGSGFAKFVQDAKVTMLGV------VPSI--VRTWKSTNCIDGYDWSSIRCFG 477 (728)
Q Consensus 407 ~~~~~~~~~~~~L-~~G~~lvl~~~~~~~~~l~~~i~~~~vt~l~~------~Ps~--l~~l~~~~~~~~~~l~~lr~i~ 477 (728)
.|+.|...+-..| ..|..++.......++.+.+.+.++++.++.+ ++++ +..+.+....... ...++ ++
T Consensus 104 ~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~-~~~v~-v~ 181 (215)
T 3ezx_A 104 IHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKL-RDSVK-CM 181 (215)
T ss_dssp CCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTC-GGGSE-EE
T ss_pred hhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCC-CCCCE-EE
Confidence 5777775443333 46666665554455678999999999998777 2222 2222221111111 01333 78
Q ss_pred eecCCCCHHHHHH
Q 004825 478 STGEASNVDEYLW 490 (728)
Q Consensus 478 ~gGe~l~~~~~~~ 490 (728)
+||.+++++..+.
T Consensus 182 vGG~~~~~~~a~~ 194 (215)
T 3ezx_A 182 FGGAPVSDKWIEE 194 (215)
T ss_dssp EESSSCCHHHHHH
T ss_pred EECCCCCHHHHHH
Confidence 8999999775543
No 91
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=25.63 E-value=2e+02 Score=28.93 Aligned_cols=72 Identities=17% Similarity=0.178 Sum_probs=46.2
Q ss_pred CCCCCCEEEEEcCCCHH------HHHHHHHHHH-cCcEEEecCC---------CCCHH---HHHHHHHhcCceEEEEecc
Q 004825 231 GLDKGSAIAIDMPMNVN------SVVIYLAIVL-AGYIVVSIAD---------SFASL---EISARLRISKAKAIFTQDL 291 (728)
Q Consensus 231 Gv~~gd~Vai~~~~s~~------~vva~lA~lk-aG~~~vpl~p---------~~~~~---~l~~~l~~~~~~~il~~~~ 291 (728)
-+++||+|+|++|.+.- .+-.-+..++ .|.-++.-.. +.+.+ .+..++.|-.+++|++..+
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999999842 2333344444 5766654321 11233 4566777889999999987
Q ss_pred eecCCcccchH
Q 004825 292 IIRGDKSIPLY 302 (728)
Q Consensus 292 ~~~~~~~~~~~ 302 (728)
.+...+.++..
T Consensus 89 G~g~~rlL~~l 99 (336)
T 3sr3_A 89 GMNSNSLLPYI 99 (336)
T ss_dssp CSCGGGGGGGS
T ss_pred cccHHHHhhhc
Confidence 76555555543
No 92
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=25.12 E-value=1.8e+02 Score=29.15 Aligned_cols=72 Identities=19% Similarity=0.161 Sum_probs=46.9
Q ss_pred CCCCCCEEEEEcCCCH------HHHHHHHHHHH-cCcEEEecCC---------CCCHH---HHHHHHHhcCceEEEEecc
Q 004825 231 GLDKGSAIAIDMPMNV------NSVVIYLAIVL-AGYIVVSIAD---------SFASL---EISARLRISKAKAIFTQDL 291 (728)
Q Consensus 231 Gv~~gd~Vai~~~~s~------~~vva~lA~lk-aG~~~vpl~p---------~~~~~---~l~~~l~~~~~~~il~~~~ 291 (728)
-+++||+|+|++|.+. +.+-.-...++ .|..++.-+. +.+.+ .+..++.|-.+++|++..+
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 4789999999999875 23333344444 5766664332 12233 4556777889999999988
Q ss_pred eecCCcccchH
Q 004825 292 IIRGDKSIPLY 302 (728)
Q Consensus 292 ~~~~~~~~~~~ 302 (728)
.+...+.++..
T Consensus 88 G~g~~rlL~~l 98 (331)
T 4e5s_A 88 GYNSNGLLKYL 98 (331)
T ss_dssp CSCGGGGGGGC
T ss_pred cccHHHHHhhc
Confidence 76655555544
No 93
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=25.02 E-value=1.6e+02 Score=32.40 Aligned_cols=89 Identities=7% Similarity=-0.148 Sum_probs=64.1
Q ss_pred CCCCceEEEecCCCCCCCceEEecCcHHHH---HHHHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEeCC
Q 004825 354 PVEAFTNILFSSGTTGEPKAIPWTNATPFK---AAADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALYNG 430 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PKgV~~sh~~l~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~~~ 430 (728)
.|+.+|++. . .-.+|.+.+.. .+.......+++++|++..+.+-+..+ +..+++.+..|+..+..+.
T Consensus 40 ~Pd~~Av~~-~--------~~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~-vva~lailkaGa~~vpld~ 109 (620)
T 4dg8_A 40 HPHREAIRD-R--------FGSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRES-ITCLLAILLSGHHYLYIDL 109 (620)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHH-HHHHHHHHHTTCEEEECCT
T ss_pred CCCCeEEEc-C--------CCcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEeeCc
Confidence 467777652 1 12477776644 334444556899999998888877554 3456799999999999887
Q ss_pred CCCcchHHHHHHHhCCcEEEec
Q 004825 431 SPLGSGFAKFVQDAKVTMLGVV 452 (728)
Q Consensus 431 ~~~~~~l~~~i~~~~vt~l~~~ 452 (728)
....+++...+++.++.++...
T Consensus 110 ~~p~~~l~~il~~~~~~~vl~~ 131 (620)
T 4dg8_A 110 KQPAAWNAELCRQVDCRLILDC 131 (620)
T ss_dssp TSCHHHHHHHHHHHTEEEEEEC
T ss_pred cChHHHHHHHHHhCCCcEEEec
Confidence 6666788889999999888744
No 94
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=24.93 E-value=4.4e+02 Score=27.23 Aligned_cols=68 Identities=12% Similarity=0.101 Sum_probs=41.4
Q ss_pred CCCCCEEEEEcCCCHHHHHHHH-HHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEecceecCCcccch
Q 004825 232 LDKGSAIAIDMPMNVNSVVIYL-AIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301 (728)
Q Consensus 232 v~~gd~Vai~~~~s~~~vva~l-A~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~ 301 (728)
+++||.|.+.-+.-....-.+- .+.+.|+.++.++.+ ..+.++..++. +.++|+.....-..+...+.
T Consensus 118 ~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~-d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl 186 (430)
T 3ri6_A 118 ARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVM-DSLAVEHACDE-TTKLLFLETISNPQLQVADL 186 (430)
T ss_dssp CCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTT-CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCH
T ss_pred hCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCC-CHHHHHHhhCC-CCeEEEEECCCCCCCeecCH
Confidence 6789988666555444333332 456778888887766 56677776654 67777766543333333343
No 95
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=24.91 E-value=3.1e+02 Score=27.18 Aligned_cols=69 Identities=7% Similarity=-0.041 Sum_probs=41.6
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCC--C--CCHHHHHHHHHhcCceEEEEecceecCCcccch
Q 004825 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIAD--S--FASLEISARLRISKAKAIFTQDLIIRGDKSIPL 301 (728)
Q Consensus 232 v~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p--~--~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~~ 301 (728)
.++||.|.+..+......-.+.++...|+.++.++. + ...+.+...++. ++++|+.....-..+...+.
T Consensus 86 ~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~ 158 (384)
T 1eg5_A 86 EKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPV 158 (384)
T ss_dssp TTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCH
T ss_pred cCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCH
Confidence 357888887766555554444445567877665543 2 456777777654 67777766543333444443
No 96
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=24.79 E-value=4.3e+02 Score=25.96 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=43.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecC--CC----CCHHHHHHHHHh----cCceEEEEecceecCCcccch
Q 004825 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIA--DS----FASLEISARLRI----SKAKAIFTQDLIIRGDKSIPL 301 (728)
Q Consensus 232 v~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~--p~----~~~~~l~~~l~~----~~~~~il~~~~~~~~~~~~~~ 301 (728)
+++||.|.+..+.......+ +...|+.++.++ .+ ...+.+...+++ .++++|+.....-..+...+.
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~ 166 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDV 166 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCH
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCH
Confidence 46899998887766655444 566787776665 32 367888888875 367777776654334444443
Q ss_pred H
Q 004825 302 Y 302 (728)
Q Consensus 302 ~ 302 (728)
.
T Consensus 167 ~ 167 (371)
T 2e7j_A 167 K 167 (371)
T ss_dssp H
T ss_pred H
Confidence 3
No 97
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=23.50 E-value=5.4e+02 Score=25.49 Aligned_cols=59 Identities=20% Similarity=0.089 Sum_probs=34.4
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE--ecCCC--CCHHHHHHHHHhcCceEEEEecc
Q 004825 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVV--SIADS--FASLEISARLRISKAKAIFTQDL 291 (728)
Q Consensus 232 v~~gd~Vai~~~~s~~~vva~lA~lkaG~~~v--pl~p~--~~~~~l~~~l~~~~~~~il~~~~ 291 (728)
+++||.|.+..+...... ..-.+-..|+.++ |++++ ...+.+...++..++++|+....
T Consensus 91 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~ 153 (393)
T 2huf_A 91 LEDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQG 153 (393)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESE
T ss_pred hCCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEcc
Confidence 468888877766543321 1112234676544 44443 45778888887646777776543
No 98
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=23.31 E-value=1.8e+02 Score=29.10 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=48.8
Q ss_pred eecHHHHHHHHHHH--H-HHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEE
Q 004825 210 SMTLKELRAEVWLV--A-YALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAI 286 (728)
Q Consensus 210 ~lTY~eL~~~a~~l--A-~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~i 286 (728)
.+++.|...-.... | +.|+..++++|++|.|...-+.-..+++++....|+..+-++. +++++ .+.+..++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r~-~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDKL-NLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHHH-HHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHHh-hhhhhcCCeEE
Confidence 46776643332221 2 3355669999999999987666666666666555666665554 34554 45667788777
Q ss_pred EEec
Q 004825 287 FTQD 290 (728)
Q Consensus 287 l~~~ 290 (728)
+...
T Consensus 213 i~~~ 216 (348)
T 4eez_A 213 INSG 216 (348)
T ss_dssp EEC-
T ss_pred EeCC
Confidence 6543
No 99
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=22.90 E-value=2.1e+02 Score=30.84 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=65.3
Q ss_pred CCCCceEEEecCCCCCCCc--eEEecCcHHHHHH---HHHHHhcCCCCCCEEEecCCcchhhhHHHHHHHhhhCcEEEEe
Q 004825 354 PVEAFTNILFSSGTTGEPK--AIPWTNATPFKAA---ADAWCHMDIRKADIVAWPTNLGWMMGPWLVYASLLNGASIALY 428 (728)
Q Consensus 354 ~~~~~a~iiyTSGSTG~PK--gV~~sh~~l~~~~---~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~L~~G~~lvl~ 428 (728)
.|+.+|++.. .|..+..+ .-.+|.+.+...+ .......++ ++|++...++-+... +..+++.+..|+..+..
T Consensus 33 ~p~~~A~~~~-~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~~-~~~~lA~~~~Gav~vpl 109 (562)
T 3ite_A 33 HPEWKAVEVA-TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLIA-FAIIVGIMKSGNTYVPI 109 (562)
T ss_dssp CTTSEEEEEE-ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHHH-HHHHHHHHHTTCEEEEC
T ss_pred CCCchhhhcc-cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHHH-HHHHHHHHHhCCEEEec
Confidence 4677776543 33333332 3567777664433 333344677 799998888877654 34567999999999998
Q ss_pred CCCCCcchHHHHHHHhCCcEEEecH
Q 004825 429 NGSPLGSGFAKFVQDAKVTMLGVVP 453 (728)
Q Consensus 429 ~~~~~~~~l~~~i~~~~vt~l~~~P 453 (728)
+.....+++...+++.++.+++...
T Consensus 110 ~~~~~~~~l~~~l~~~~~~~~i~~~ 134 (562)
T 3ite_A 110 EAGLPNDRKSFLLRDSRAAMAFVCD 134 (562)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECT
T ss_pred CCcCHHHHHHHHHHhcCCCEEEEcc
Confidence 8766777899999999999877654
No 100
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=22.65 E-value=1.2e+02 Score=22.97 Aligned_cols=46 Identities=15% Similarity=0.063 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Q 004825 624 SVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAV 683 (728)
Q Consensus 624 ~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l 683 (728)
..++++.| +..|+|.+|..+.-+ ..+.+.+..++ .+++.+.+.+.+
T Consensus 15 ~~~~~~~l-~~~peV~e~~~vtG~------~D~ll~v~~~d-------~~~l~~~i~~~l 60 (83)
T 2cvi_A 15 EREVMEKL-LAMPEVKEAYVVYGE------YDLIVKVETDT-------LKDLDQFITEKI 60 (83)
T ss_dssp HHHHHHHH-HTSTTEEEEEECBSS------CSEEEEEEESS-------HHHHHHHHHTTG
T ss_pred HHHHHHHH-hCCCCeeEEEEEccc------CCEEEEEEECC-------HHHHHHHHHHHh
Confidence 47899999 499999999877522 34555555443 566666544333
No 101
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=22.65 E-value=5.5e+02 Score=25.18 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=41.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE--ecCCC--CCHHHHHHHHHhcCceEEEEecceecCCccc
Q 004825 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVV--SIADS--FASLEISARLRISKAKAIFTQDLIIRGDKSI 299 (728)
Q Consensus 232 v~~gd~Vai~~~~s~~~vva~lA~lkaG~~~v--pl~p~--~~~~~l~~~l~~~~~~~il~~~~~~~~~~~~ 299 (728)
+++||.|.+..+.-..+.- ++...|+.++ |++++ ...+.+...++..++++|+.....-..+...
T Consensus 106 ~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~ 174 (367)
T 3euc_A 106 ARPGAKVMAPVPGFVMYAM---SAQFAGLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNLF 174 (367)
T ss_dssp CCTTCEEEEEESCSCCSCH---HHHTTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCCC
T ss_pred cCCCCEEEEcCCCHHHHHH---HHHHcCCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCCC
Confidence 5789999888776544332 2445677555 45443 4678899988877788888764433333333
No 102
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=21.77 E-value=2.6e+02 Score=22.45 Aligned_cols=64 Identities=11% Similarity=0.105 Sum_probs=38.8
Q ss_pred cHHHHHHHHhcCCCCeeeeEEEeecCCCCCceEEEEEEEecCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 004825 623 SSVEIERICNAVDSNVLETAAIGVPPPDGGPEQLTIVVVFKDSNYTPPDLNQLRMSFNSAVQKKLNP 689 (728)
Q Consensus 623 ~~~eIE~~l~~~~p~V~~~~Vv~~~~~~~g~~~l~a~vv~~~~~~~~~~~~~l~~~l~~~l~~~Lp~ 689 (728)
...+|+..+. ..|+|.++-=+-... .+....+-+-++..+ +.......++...+++.|++.+|.
T Consensus 11 ~~~~I~~~l~-~~~gV~~vh~lr~r~-~G~~~~v~~hI~v~~-~~sv~eah~i~~~ie~~L~~~~~~ 74 (107)
T 2zzt_A 11 MYDDIFAVLE-RFPNVHNPHRVRIRR-VGTKYFIEMDIEVDG-KMSVKDAHELTVKIRKEMLKRRDD 74 (107)
T ss_dssp HHHHHHHHHT-TCSSCEEEEEEEEEC-SCC-CEEEEEEEECT-TSCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHH-cCCCccccEEEEEEE-ECCcEEEEEEEEECC-CCCHHHHHHHHHHHHHHHHHHCCC
Confidence 4567888885 899998875443333 223245555566654 220012346788888889888873
No 103
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=21.65 E-value=3.3e+02 Score=26.87 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=41.6
Q ss_pred HHHcCC-CCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEec
Q 004825 227 LNALGL-DKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQD 290 (728)
Q Consensus 227 L~~~Gv-~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~~ 290 (728)
+.+.|. ++|....|....+-.-....+++.+.|.-++.+-|...+..-...++..+++++++..
T Consensus 57 a~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~ 121 (322)
T 1z7w_A 57 AEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDP 121 (322)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Confidence 345564 6675344445566666666677778998666655543334445677889999998875
No 104
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.85 E-value=1.3e+02 Score=25.85 Aligned_cols=51 Identities=4% Similarity=-0.085 Sum_probs=34.3
Q ss_pred CCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEE
Q 004825 235 GSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAI 286 (728)
Q Consensus 235 gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~i 286 (728)
=|.|.|+.|. ....-.+..|.++|.-.+.+++....+++....+..+.+++
T Consensus 71 ~Dlvii~vp~-~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 71 VDMVDVFRNS-EAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp CSEEECCSCS-THHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CCEEEEEeCH-HHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 3677777774 44444444566677666666777667888888888777654
No 105
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=20.83 E-value=2.1e+02 Score=28.37 Aligned_cols=72 Identities=8% Similarity=-0.010 Sum_probs=45.5
Q ss_pred CCCCCCEEEEEcCCCH---HHHHHHHHHHH-cCcEEEecCC---------CCCH---HHHHHHHHhcCceEEEEecceec
Q 004825 231 GLDKGSAIAIDMPMNV---NSVVIYLAIVL-AGYIVVSIAD---------SFAS---LEISARLRISKAKAIFTQDLIIR 294 (728)
Q Consensus 231 Gv~~gd~Vai~~~~s~---~~vva~lA~lk-aG~~~vpl~p---------~~~~---~~l~~~l~~~~~~~il~~~~~~~ 294 (728)
-+++||+|+|++|.+. +.+-.-...++ .|..++.-+. +.+. +.+..++.|-.+++|++..+.+.
T Consensus 13 ~L~~Gd~I~ivaPSs~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGyg 92 (311)
T 1zl0_A 13 WQPIDGRVALIAPASAIATDVLEATLRQLEVHGVDYHLGRHVEARYRYLAGTVEQRLEDLHNAFDMPDITAVWCLRGGYG 92 (311)
T ss_dssp CCCCCSEEEEECCSBCCCHHHHHHHHHHHHHTTCCEEECTTTTCCBTTBSSCHHHHHHHHHHHHHSTTEEEEEESCCSSC
T ss_pred cCCCcCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEECccccccccccCCCHHHHHHHHHHHHhCCCCCEEEEccCCcC
Confidence 4789999999999874 23333333333 4655553321 1223 34666777889999999988766
Q ss_pred CCcccchH
Q 004825 295 GDKSIPLY 302 (728)
Q Consensus 295 ~~~~~~~~ 302 (728)
..+.++..
T Consensus 93 a~rlLp~L 100 (311)
T 1zl0_A 93 CGQLLPGL 100 (311)
T ss_dssp GGGGTTTC
T ss_pred HHHHhhcc
Confidence 55555544
No 106
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=20.77 E-value=3e+02 Score=27.84 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=41.8
Q ss_pred HHHHHcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCC----CCHHHHHHHHHhc--CceEEEEec
Q 004825 225 YALNALGLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADS----FASLEISARLRIS--KAKAIFTQD 290 (728)
Q Consensus 225 ~~L~~~Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~----~~~~~l~~~l~~~--~~~~il~~~ 290 (728)
..++..++++||.|.+..+.......+ +...|+.++.++.+ ...+.+...+++. ++++|+...
T Consensus 62 ~~~~~l~~~~gd~Vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 62 LALRVAGVKQDDIVLASSFTFIASVAP---ICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHHHTTCCTTCEEEEESSSCGGGTHH---HHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHHHcCCCCCCEEEECCCccHHHHHH---HHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 334444678999999888877665433 34478776665532 4678888888764 567776654
No 107
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=20.39 E-value=6.2e+02 Score=25.20 Aligned_cols=67 Identities=16% Similarity=0.119 Sum_probs=45.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhc---CceEEEEecceecCCcccchH
Q 004825 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRIS---KAKAIFTQDLIIRGDKSIPLY 302 (728)
Q Consensus 232 v~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~---~~~~il~~~~~~~~~~~~~~~ 302 (728)
.++||.|.+..+......- ++...|+..++++. ...+.++..++.. ++++|++....-..+...+..
T Consensus 124 ~~~gd~V~~~~p~~~~~~~---~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~~~ 193 (398)
T 3a2b_A 124 MGRNDYILLDERDHASIID---GSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVNLP 193 (398)
T ss_dssp SCTTCEEEEETTCCHHHHH---HHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCCHH
T ss_pred hCCCCEEEECCccCHHHHH---HHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccCHH
Confidence 5789999888877665543 35567988888765 4678888888875 678888766543334444433
No 108
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=20.23 E-value=4.1e+02 Score=26.37 Aligned_cols=69 Identities=3% Similarity=-0.059 Sum_probs=36.8
Q ss_pred HHHHHHHHHc-CCCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceEEEEe
Q 004825 221 WLVAYALNAL-GLDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKAIFTQ 289 (728)
Q Consensus 221 ~~lA~~L~~~-Gv~~gd~Vai~~~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~il~~ 289 (728)
.++...|.+. |....+.|.+...-+..+..++.++++-|-..+...+.+........++..+.+++...
T Consensus 59 ~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~g~~~~~~~ 128 (393)
T 3kgw_A 59 EEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMI 128 (393)
T ss_dssp HHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHHCCTTCEEEEEESSHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhcCCCCCEEEEEeCCchhHHHHHHHHHcCCceEEEe
Confidence 3444444443 55544445444444444445555555666555544555544455666777777776654
No 109
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=20.06 E-value=6.5e+02 Score=25.02 Aligned_cols=68 Identities=6% Similarity=-0.003 Sum_probs=40.7
Q ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCcEEE--ecCCCC--CHHHHHHHHHhcCceEEEEecceecCCcccc
Q 004825 232 LDKGSAIAIDMPMNVNSVVIYLAIVLAGYIVV--SIADSF--ASLEISARLRISKAKAIFTQDLIIRGDKSIP 300 (728)
Q Consensus 232 v~~gd~Vai~~~~s~~~vva~lA~lkaG~~~v--pl~p~~--~~~~l~~~l~~~~~~~il~~~~~~~~~~~~~ 300 (728)
+++||.|.+..+...... ..-++...|+.++ |++.+. ..+.+...++..++++|+.....-..+...+
T Consensus 85 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~ 156 (411)
T 3nnk_A 85 IRPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQP 156 (411)
T ss_dssp CCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred cCCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceecc
Confidence 678999888776443211 2333445676554 444332 5788888888768888887764333333333
No 110
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=20.06 E-value=2.4e+02 Score=27.71 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=48.1
Q ss_pred eecHHHHHHHHHH--HH-HHHHHcCCCCCCEEEEEc-CCCHHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCceE
Q 004825 210 SMTLKELRAEVWL--VA-YALNALGLDKGSAIAIDM-PMNVNSVVIYLAIVLAGYIVVSIADSFASLEISARLRISKAKA 285 (728)
Q Consensus 210 ~lTY~eL~~~a~~--lA-~~L~~~Gv~~gd~Vai~~-~~s~~~vva~lA~lkaG~~~vpl~p~~~~~~l~~~l~~~~~~~ 285 (728)
.+++.+...-... .| +.|...++++|++|+|.. .-+.-..++.+|- ..|+..+-+. +.++ ..++++.++..
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 4677765433222 12 334556999999999997 4555666666654 5688766553 4555 55677888887
Q ss_pred EEEec
Q 004825 286 IFTQD 290 (728)
Q Consensus 286 il~~~ 290 (728)
++...
T Consensus 200 ~i~~~ 204 (321)
T 3tqh_A 200 CINYH 204 (321)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 66543
Done!