BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004826
(728 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 307 bits (787), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 156/295 (52%), Positives = 203/295 (68%), Gaps = 23/295 (7%)
Query: 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKS 487
+DM++MF LL+E+ +++D A PL + G I+F+NVHFSY R+ L VSF V G++
Sbjct: 23 IDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQT 82
Query: 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND 547
+A+VG SG+GKSTILRLLFR +D SG IRIDGQDI +VT SLR IGVVPQDTVLFND
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607
TI NIRYGR++A +EV AA+ A IHD IM FP Y T VGERGLK
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK------------ 190
Query: 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSI 667
LSGGEKQRVA+AR LKAP I+L DEATSALD++ E I +L + NRT+I
Sbjct: 191 -------LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTI 243
Query: 668 FIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW----GQQNNTAD 718
+AHRL+T + D+I+V+++G ++E+G H+ LL++ G YA +W GQ+ + D
Sbjct: 244 VVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEETSED 298
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 271 bits (693), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 176/516 (34%), Positives = 273/516 (52%), Gaps = 39/516 (7%)
Query: 209 RTIRSVSRKVFSHLHELDLRYHLSRETG-ALNRIIDRGSRAINFILSSMV---FNVVPTI 264
+ + + +K+++HL L R++ + + G ++R+I+ + +FIL+ ++ + + I
Sbjct: 91 KILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITII 150
Query: 265 LEISM-----VSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDAS 319
+ +S+ V LA F PF +T YV F + R K + ++A +
Sbjct: 151 IALSIMFFLDVKLTLAALFIFPFYILT-----VYVFFG----RLR-KLTRERSQALAEVQ 200
Query: 320 TRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALS 379
+ + VK F E EA+ +D+ + ALK R A+ N +
Sbjct: 201 GFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPI 260
Query: 380 TAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
+ + ++ +SG +TVG L + + QS M +FQL++E
Sbjct: 261 IVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320
Query: 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGK 498
DI++ A P+ +K G I D+V F Y E IL ++ + G++VA VG SG GK
Sbjct: 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGK 380
Query: 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL 558
ST++ L+ R +D SG I IDG +I + SLR IG+V QD +LF+DT+ NI GR
Sbjct: 381 STLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRP 440
Query: 559 SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618
+AT+EEV +AA+ A HD IMN P Y T VGERG+K LSGG
Sbjct: 441 TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK-------------------LSGG 481
Query: 619 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ 678
+KQR+++AR FL PPIL+ DEATSALD +E+ I AL L+ +RT++ +AHRL+T
Sbjct: 482 QKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH 541
Query: 679 CDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714
D+I+V+ENG ++E G+H +L+ K G Y L+ QN
Sbjct: 542 ADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 169/512 (33%), Positives = 255/512 (49%), Gaps = 30/512 (5%)
Query: 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVP 262
S V+ + + R++F+H + +R+ TG L I S + S + ++V
Sbjct: 89 LSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVR 148
Query: 263 TILEISMVSGILAYKFGAPFAWITSLSVVAYVV-FTLSVTQWR-TKFRKAMNKADNDAST 320
E + + G+L F + L VVA VV F +S R K + M A ++
Sbjct: 149 ---EGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTS 205
Query: 321 RAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALST 380
A L ++ V + + E +++D+ +K + + + +I S AL
Sbjct: 206 SAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFA 265
Query: 381 AMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEEK 440
+ L S + E+T G +V SV E + + +++F L++ +
Sbjct: 266 VLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325
Query: 441 ADIQDRDNA-MPLNLKGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGK 498
+ RDN G + +V F+Y E+ L VSF +P GK+VA+VG SGSGK
Sbjct: 326 TE---RDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGK 382
Query: 499 STILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL 558
STI L R +D SGSI +DG D+ + L +LR+ +V Q+ LFNDTI +NI Y
Sbjct: 383 STIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAE 442
Query: 559 SA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617
T E++ AAR+A + I N P TV+GE G SLSG
Sbjct: 443 GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENG-------------------TSLSG 483
Query: 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM 677
G++QRVA+ARA L+ P+L+ DEATSALD+ +E I AL L N+T + IAHRL+T
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE 543
Query: 678 QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 709
Q DEI+V++ G++IE+G H DLL + G YAQL
Sbjct: 544 QADEILVVDEGEIIERGRHADLLAQDGAYAQL 575
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 231 bits (589), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 118/265 (44%), Positives = 170/265 (64%), Gaps = 22/265 (8%)
Query: 456 GGSIQFDNVHFSY--LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513
G +I+F +V+FSY T + L ++F +P+G + A+VG +GSGKSTI +LL+R +D
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE- 73
Query: 514 GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAA 573
G I+I G+++ + S+R IG+VPQDT+LFN+TI +NI YG+L AT+EEV A + A
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQ 133
Query: 574 IHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP 633
++D I P K+ T+VG +G+K LSGGE+QR+A+AR LK P
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMK-------------------LSGGERQRIAIARCLLKDP 174
Query: 634 PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 693
I++ DEATS+LDS TE A++ L NRT I IAHRL+T + II+L GK++E+
Sbjct: 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEK 234
Query: 694 GSHDDLLTKAGRYAQLWGQQNNTAD 718
G+H DLL G YA++W Q+ D
Sbjct: 235 GTHKDLLKLNGEYAEMWNMQSGGND 259
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 228 bits (580), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 165/540 (30%), Positives = 273/540 (50%), Gaps = 37/540 (6%)
Query: 181 VLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNR 240
V+IG I R S + + S V+ + + ++ R++F H+ + + + + TG L
Sbjct: 70 VVIGLMILRGITSYIS---SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLS 126
Query: 241 IIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLS 299
I S + SS ++ + E + + G+ F ++W S+ +V + +++
Sbjct: 127 RITYDSEQVA---SSSSGALITVVREGASIIGLFIMMF--YYSWQLSIILVVLAPIVSIA 181
Query: 300 VTQWRTKFR---KAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAA 356
+ +FR K M +T A L ++ V F + E +++D+ +
Sbjct: 182 IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 241
Query: 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXX 416
+K + + + +I S AL+ + S + +T G + +V
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAM-PLNLKGGSIQFDNVHFSYLT-ERKI 474
+V + + + +++F +L+ + Q++D ++ G ++F NV F+Y E
Sbjct: 302 TNVNAQFQRGMAACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA 358
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L ++ +PAGK+VA+VG SGSGKSTI L+ R +D G I +DG D+ E TL SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
+ +V Q+ LFNDT+ +NI Y R + E++ +AAR A D I T++GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
V LSGG++QR+A+ARA L+ PIL+ DEATSALD+ +E I
Sbjct: 479 -------------------VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 654 LNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 713
AL L NRTS+ IAHRL+T Q DEI+V+E+G ++E+G+H +LL + G YAQL Q
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 226 bits (577), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 165/540 (30%), Positives = 273/540 (50%), Gaps = 37/540 (6%)
Query: 181 VLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNR 240
V+IG I R S + + S V+ + + ++ R++F H+ + + + + TG L
Sbjct: 70 VVIGLMILRGITSYVS---SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLS 126
Query: 241 IIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV-VFTLS 299
I S + SS ++ + E + + G+ F ++W S+ ++ + +++
Sbjct: 127 RITYDSEQVA---SSSSGALITVVREGASIIGLFIMMF--YYSWQLSIILIVLAPIVSIA 181
Query: 300 VTQWRTKFR---KAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAA 356
+ +FR K M +T A L ++ V F + E +++D+ R
Sbjct: 182 IRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQG 241
Query: 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXX 416
+K + + + +I S AL+ + S + +T G + +V
Sbjct: 242 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 301
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG-GSIQFDNVHFSYLT-ERKI 474
+V + + + +++F +L+ + Q++D + + G ++F NV F+Y +
Sbjct: 302 TNVNAQFQRGMAACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGRDVPA 358
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L ++ +PAGK+VA+VG SGSGKSTI L+ R +D G I +DG D+ E TL SLR
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQ 418
Query: 535 IGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
+ +V Q+ LFNDT+ +NI Y R + E++ +AAR A D I TV+GE G
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
V LSGG++QR+A+ARA L+ PIL+ DEATSALD+ +E I
Sbjct: 479 -------------------VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 519
Query: 654 LNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 713
AL L NRTS+ IAHRL+T + DEI+V+E+G ++E+G+H+DLL G YAQL Q
Sbjct: 520 QAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGVYAQLHKMQ 579
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 192/606 (31%), Positives = 279/606 (46%), Gaps = 54/606 (8%)
Query: 124 RLRVITALGFLVAAKVLNVQVPFLFKXXXXXXXXXXXXXXXXXXXXXXXXXFGTPAAVLI 183
R R+ A+GFL + V+++ PF G A L
Sbjct: 18 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC---LGLSAVFLC 74
Query: 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIID 243
G +A N +R + R + + +FS + ++ + TG L I+
Sbjct: 75 G--------AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGEL---IN 123
Query: 244 RGSRAINFILSSMVFNVVPTILEISMVS-GILAYKFGAPFAWITSLSVVAYV-VFTLSVT 301
R S + S+ N+ + + S GI F +P LSVV V + +
Sbjct: 124 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 183
Query: 302 QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361
++ K K + A+ A + + N TV+ F E E E+Y + D ++ R
Sbjct: 184 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV----DHVMQLAR 239
Query: 362 SLAFLN---FGQNVIFSAALSTAMVLCSHGILSG--EMTVGDLVMVXXXXXXXXXXXXXX 416
AF FG + S L VL G+L G MTVG+L
Sbjct: 240 KEAFARAGFFGATGL-SGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGL 298
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ER 472
S Y E ++ L +++LLE + + + + LN K G+++F NVHF+Y E
Sbjct: 299 SSFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEV 357
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR 532
I S +P+G A+VG SGSGKST+L LL R +D SG+I +DG DI ++ LR
Sbjct: 358 PIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLR 417
Query: 533 KSIGVVPQDTVLFNDTIFHNIRYG---RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
IG V Q+ +LF+ +I NI YG S T EE+ A A I NFP ++TVV
Sbjct: 418 SKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 590 GERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 649
GE+G V LSGG+KQR+A+ARA LK P ILL DEATSALD+
Sbjct: 478 GEKG-------------------VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAEN 518
Query: 650 EAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQ 708
E + AL L + RT + IAHRL+T + + VL+ GK+ E G H++LL+K G Y +
Sbjct: 519 EYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRK 578
Query: 709 LWGQQN 714
L +Q+
Sbjct: 579 LMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 219 bits (557), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 190/605 (31%), Positives = 276/605 (45%), Gaps = 52/605 (8%)
Query: 124 RLRVITALGFLVAAKVLNVQVPFLFKXXXXXXXXXXXXXXXXXXXXXXXXXFGTPAAVLI 183
R R+ A+GFL + V+++ PF G A L
Sbjct: 49 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC---LGLSAVFLC 105
Query: 184 GYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIID 243
G +A N +R + R + + +FS + ++ + TG L I+
Sbjct: 106 G--------AAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGEL---IN 154
Query: 244 RGSRAINFILSSMVFNVVPTILEISMVS-GILAYKFGAPFAWITSLSVVAYV-VFTLSVT 301
R S + S+ N+ + + S GI F +P LSVV V + +
Sbjct: 155 RLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYG 214
Query: 302 QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361
++ K K + A+ A + + N TV+ F E E E+Y + D ++ R
Sbjct: 215 RYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKV----DHVMQLAR 270
Query: 362 SLAFLNFG--QNVIFSAALSTAMVLCSHGILSG--EMTVGDLVMVXXXXXXXXXXXXXXX 417
AF G S L VL G+L G MTVG+L
Sbjct: 271 KEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLS 330
Query: 418 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKG--GSIQFDNVHFSYLT--ERK 473
S Y E ++ L +++LLE + + + + LN K G+++F NVHF+Y E
Sbjct: 331 SFYSELMKGLGAGGRLWELLEREPKLPFNEGVI-LNEKSFQGALEFKNVHFAYPARPEVP 389
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
I S +P+G A+VG SGSGKST+L LL R +D SG+I +DG DI ++ LR
Sbjct: 390 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRS 449
Query: 534 SIGVVPQDTVLFNDTIFHNIRYG---RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
IG V Q+ +LF+ +I NI YG S T EE+ A A I NFP ++TVVG
Sbjct: 450 KIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVG 509
Query: 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 650
E+G V LSGG+KQR+A+ARA LK P ILL DEATSALD+ E
Sbjct: 510 EKG-------------------VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENE 550
Query: 651 AEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQL 709
+ AL L + RT + IAH L+T + + VL+ GK+ E G H++LL+K G Y +L
Sbjct: 551 YLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKL 610
Query: 710 WGQQN 714
+Q+
Sbjct: 611 MNKQS 615
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 161/524 (30%), Positives = 255/524 (48%), Gaps = 41/524 (7%)
Query: 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALN-RIIDRGSRAINFILS-- 254
++ + + A R I + +K F + ++ + + G LN R+ D S+ IN +
Sbjct: 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSK-INEGIGDK 185
Query: 255 -SMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAY-VVFTLSVTQWRTKFRKAMN 312
M F + T + G W +L ++A V LS W +
Sbjct: 186 IGMFFQAMATFFG--------GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTD 237
Query: 313 K---ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFG 369
K A A A + L TV F + E E+Y+ L + +K +
Sbjct: 238 KELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGA 297
Query: 370 QNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVD 429
++ A+ + A + ++S E ++G ++ V +
Sbjct: 298 AFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGA 357
Query: 430 MKSMFQLLEEKADIQD--RDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAG 485
+F++++ K I + P N++G +++F N+HFSY + E +IL G++ V +G
Sbjct: 358 AYEVFKIIDNKPSIDSFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545
++VA+VG SG GKST ++L+ R +D G + IDGQDI + + LR+ IGVV Q+ VLF
Sbjct: 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605
TI NIRYGR T +E+ A + A +D IM P ++ T+VGERG +
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ---------- 526
Query: 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRT 665
LSGG+KQR+A+ARA ++ P ILL DEATSALD+ +EA + AL RT
Sbjct: 527 ---------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577
Query: 666 SIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 709
+I IAHRL+T D I + G ++EQG+HD+L+ + G Y +L
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKL 621
Score = 199 bits (505), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 139/438 (31%), Positives = 231/438 (52%), Gaps = 36/438 (8%)
Query: 282 FAWITSLSVVAYV--VFTLSVTQWRTKFRKAM-NKADNDASTR-AIDSLINYETVKYFNN 337
+ W +L ++A V + V + + +A+ +K + + S + A +++ N+ TV
Sbjct: 849 YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908
Query: 338 EAFEAEQYDEFLR-RYEDAALKTQRSLAFLNFGQNVIF---SAALSTAMVLCSHGILSGE 393
E Y + L+ Y +A K +F Q +++ +AA L + +
Sbjct: 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQL---- 964
Query: 394 MTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMPL 452
MT ++++V S + ++ V + +++E+ +I +
Sbjct: 965 MTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKP 1024
Query: 453 NLKGGSIQFDNVHFSYLTERKI--LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510
N+ G++QF V F+Y T I L G+S V G+++A+VG+SG GKST+++LL R +D
Sbjct: 1025 NMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084
Query: 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--ATEEEVYDA 568
+GS+ +DG++I ++ ++ LR +G+V Q+ +LF+ +I NI YG S + EE+ A
Sbjct: 1085 PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRA 1144
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARA 628
A+ A IH I + P KY+T VG++G + LSGG+KQR+A+ARA
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQ-------------------LSGGQKQRIAIARA 1185
Query: 629 FLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENG 688
++ P ILL DEATSALD+ +E + AL RT I IAHRL+T D I+V++NG
Sbjct: 1186 LVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNG 1245
Query: 689 KVIEQGSHDDLLTKAGRY 706
KV E G+H LL + G Y
Sbjct: 1246 KVKEHGTHQQLLAQKGIY 1263
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 161/524 (30%), Positives = 255/524 (48%), Gaps = 41/524 (7%)
Query: 198 LRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALN-RIIDRGSRAINFILS-- 254
++ + + A R I + +K F + ++ + + G LN R+ D S+ IN +
Sbjct: 127 IQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSK-INEGIGDK 185
Query: 255 -SMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAY-VVFTLSVTQWRTKFRKAMN 312
M F + T + G W +L ++A V LS W +
Sbjct: 186 IGMFFQAMATFFG--------GFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTD 237
Query: 313 K---ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFG 369
K A A A + L TV F + E E+Y+ L + +K +
Sbjct: 238 KELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGA 297
Query: 370 QNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVD 429
++ A+ + A + ++S E ++G ++ V +
Sbjct: 298 AFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGA 357
Query: 430 MKSMFQLLEEKADIQD--RDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAG 485
+F++++ K I + P N++G +++F N+HFSY + E +IL G++ V +G
Sbjct: 358 AYEVFKIIDNKPSIDSFSKSGHKPDNIQG-NLEFKNIHFSYPSRKEVQILKGLNLKVKSG 416
Query: 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545
++VA+VG SG GKST ++L+ R +D G + IDGQDI + + LR+ IGVV Q+ VLF
Sbjct: 417 QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF 476
Query: 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605
TI NIRYGR T +E+ A + A +D IM P ++ T+VGERG +
Sbjct: 477 ATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQ---------- 526
Query: 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRT 665
LSGG+KQR+A+ARA ++ P ILL DEATSALD+ +EA + AL RT
Sbjct: 527 ---------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577
Query: 666 SIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQL 709
+I IAHRL+T D I + G ++EQG+HD+L+ + G Y +L
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKL 621
Score = 199 bits (505), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 172/287 (59%), Gaps = 24/287 (8%)
Query: 425 QSLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLTERKI--LDGVSFV 481
++ V + +++E+ +I + N+ G++QF V F+Y T I L G+S
Sbjct: 996 KATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLE 1055
Query: 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541
V G+++A+VG+SG GKST+++LL R +D +GS+ +DG++I ++ ++ LR +G+V Q+
Sbjct: 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQE 1115
Query: 542 TVLFNDTIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSL 599
+LF+ +I NI YG S + EE+ AA+ A IH I + P KY+T VG++G +
Sbjct: 1116 PILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ---- 1171
Query: 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS 659
LSGG+KQR+A+ARA ++ P ILL DEATSALD+ +E + AL
Sbjct: 1172 ---------------LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216
Query: 660 LANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRY 706
RT I IAHRL+T D I+V++NGKV E G+H LL + G Y
Sbjct: 1217 AREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIY 1263
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 139/423 (32%), Positives = 219/423 (51%), Gaps = 38/423 (8%)
Query: 303 WRTK-----FRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY---DEFLRRYED 354
W TK FRK D + + ++L+ V+ F E +E E + +E LRR
Sbjct: 182 WLTKKGNPLFRKIQESTD-EVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSII 240
Query: 355 AALKTQRSLAFLNFGQNV-IFSAALSTAMVLCSHGIL--SGEMTVGDLVMVXXXXXXXXX 411
+A + + F + IF + VL G+L + +M +G ++
Sbjct: 241 SAF------SLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMF 294
Query: 412 XXXXXXSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE 471
++ V++ K + ++L EK I++ DNA+ L GS+ F+NV F Y
Sbjct: 295 SLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFEN 354
Query: 472 R-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES 530
+L GV+F V G VA++G +GSGKST++ L+ R D G + +D D+ V L+
Sbjct: 355 TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKD 414
Query: 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
LR I VPQ+TVLF+ TI N+++GR AT++E+ +AA+ A IHD I++ P Y + V
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRV- 473
Query: 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 650
ERG GR + SGG+KQR+++ARA +K P +L+ D+ TS++D TE
Sbjct: 474 ERG--GR----------------NFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE 515
Query: 651 AEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 710
IL+ LK T+ I ++ TA+ D+I+VL GKV G+H +LL Y +++
Sbjct: 516 KRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIY 575
Query: 711 GQQ 713
Q
Sbjct: 576 ESQ 578
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 209 bits (531), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 123/296 (41%), Positives = 173/296 (58%), Gaps = 23/296 (7%)
Query: 433 MFQLLEEKADIQDRDNAMPLNLK-GGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVA 489
++++L+ K I A ++K G I +NVHF+Y + + IL G++ V AG++VA
Sbjct: 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVA 448
Query: 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549
+VG+SG GKSTI+ LL R +D G I IDG D+ ++ LE LRK++ VV Q+ LFN TI
Sbjct: 449 LVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTI 508
Query: 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609
NI G+ T EE+ A + A I P Y+T+VG+RG +
Sbjct: 509 EENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQ-------------- 554
Query: 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFI 669
LSGG+KQR+A+ARA ++ P ILL DEATSALD+ +E + AL A RT+I I
Sbjct: 555 -----LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609
Query: 670 AHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDAAVK 725
AHRL+T D II +NG+V+E G H L+ + G Y L Q T DA+D+A +
Sbjct: 610 AHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTFT-DAVDSAAE 664
Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 157/481 (32%), Positives = 240/481 (49%), Gaps = 48/481 (9%)
Query: 248 AINFILSSMVFNVVPTILEISMVSGI-LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTK 306
AI+F S+++ +V SMV+GI LA+ +G A + ++++ V F + R
Sbjct: 869 AIDFRFSTVITTLV------SMVAGIGLAFFYGWQMALLI-IAILPIVAFGQYLRGRRFT 921
Query: 307 FRKAMNKAD-NDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365
+ + ++ D+ AI+++ N TV+ E E + E L A+K AF
Sbjct: 922 GKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE----AF 977
Query: 366 LNFGQNVIFSAALSTAMVL--CSHG-----ILSGEMTVGDL--VMVXXXXXXXXXXXXXX 416
+ Q + + A S +L C++ I++ T+ + + V
Sbjct: 978 I---QGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFA 1034
Query: 417 XSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYL--TERKI 474
S + E ++ +F +L + + I A G + F NV F+Y E +I
Sbjct: 1035 TSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI 1094
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L G+SF V G+++A+VG SG GKST++ LL R +DT G I IDG +I + E R
Sbjct: 1095 LKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQ 1154
Query: 535 IGVVPQDTVLFNDTIFHNIRYG--RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGER 592
I +V Q+ LF+ +I NI YG S T +V +AAR A IH+ I P + T VG+R
Sbjct: 1155 IAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDR 1214
Query: 593 GLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAE 652
G + LSGG+KQR+A+ARA ++ P ILL DEATSALD+ +E
Sbjct: 1215 GTQ-------------------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKV 1255
Query: 653 ILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 712
+ AL RT I IAHRL T M D I V+ NG +IE+G+H L+++ G Y +L +
Sbjct: 1256 VQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQK 1315
Query: 713 Q 713
Q
Sbjct: 1316 Q 1316
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 199/394 (50%), Gaps = 44/394 (11%)
Query: 332 VKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSH---G 388
+K F E E E++D K Q IFS L M + ++
Sbjct: 229 IKLFTREEKEMEKFDRVNESLRKVGTKAQ------------IFSGVLPPLMNMVNNLGFA 276
Query: 389 ILSG---------EMTVGDLVMVXXXXXXXXXXXXXXXSVYRETVQSLVDMKSMFQLLEE 439
++SG +TVG + + + +L + +F++L+
Sbjct: 277 LISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336
Query: 440 KADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKS 499
+ + D D A+ L G I+F NV FSY ++ +L ++F + G+ VA+VG +GSGK+
Sbjct: 337 EEEKDDPD-AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKT 395
Query: 500 TILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS 559
TI+ LL R +D G I +DG DI ++ SLR SIG+V QDT+LF+ T+ N++YG
Sbjct: 396 TIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG 455
Query: 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE 619
AT+EE+ +AA+ I + P Y TV+ + G LS G+
Sbjct: 456 ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNG-------------------EDLSQGQ 496
Query: 620 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQC 679
+Q +A+ RAFL P IL+ DEATS +D+ TE I A+ L +TSI IAHRL T
Sbjct: 497 RQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNA 556
Query: 680 DEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 713
D IIVL +G+++E G HD+L+ K G Y +L+ Q
Sbjct: 557 DLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 145/259 (55%), Gaps = 21/259 (8%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+
Sbjct: 124 ISELREGYNTIVGEQG-------------------AGLSGGQRQRIAIARALVNNPKILI 164
Query: 638 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697
DEATSALD +E I+ + + RT I IAHRL+T D IIV+E GK++EQG H
Sbjct: 165 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 224
Query: 698 DLLTKA-GRYAQLWGQQNN 715
+LL++ Y+ L+ Q++
Sbjct: 225 ELLSEPESLYSYLYQLQSD 243
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 145/259 (55%), Gaps = 21/259 (8%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+
Sbjct: 122 ISELREGYNTIVGEQG-------------------AGLSGGQRQRIAIARALVNNPKILI 162
Query: 638 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697
DEATSALD +E I+ + + RT I IAHRL+T D IIV+E GK++EQG H
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 222
Query: 698 DLLTKA-GRYAQLWGQQNN 715
+LL++ Y+ L+ Q++
Sbjct: 223 ELLSEPESLYSYLYQLQSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/259 (38%), Positives = 145/259 (55%), Gaps = 21/259 (8%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+
Sbjct: 128 ISELREGYNTIVGEQG-------------------AGLSGGQRQRIAIARALVNNPKILI 168
Query: 638 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697
DEATSALD +E I+ + + RT I IAHRL+T D IIV+E GK++EQG H
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 228
Query: 698 DLLTKA-GRYAQLWGQQNN 715
+LL++ Y+ L+ Q++
Sbjct: 229 ELLSEPESLYSYLYQLQSD 247
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 176 bits (447), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 145/259 (55%), Gaps = 21/259 (8%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG +GSGKST+ +L+ R + +G +
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+
Sbjct: 124 ISELREGYNTIVGEQG-------------------AGLSGGQRQRIAIARALVNNPKILI 164
Query: 638 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697
DEATSALD +E I+ + + RT I IAHRL+T D IIV+E GK++EQG H
Sbjct: 165 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 224
Query: 698 DLLTKA-GRYAQLWGQQNN 715
+LL++ Y+ L+ Q++
Sbjct: 225 ELLSEPESLYSYLYQLQSD 243
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 145/259 (55%), Gaps = 21/259 (8%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+
Sbjct: 128 ISELREGYNTIVGEQG-------------------AGLSGGQRQRIAIARALVNNPKILI 168
Query: 638 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697
D+ATSALD +E I+ + + RT I IAHRL+T D IIV+E GK++EQG H
Sbjct: 169 FDQATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 228
Query: 698 DLLTKA-GRYAQLWGQQNN 715
+LL++ Y+ L+ Q++
Sbjct: 229 ELLSEPESLYSYLYQLQSD 247
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 144/259 (55%), Gaps = 21/259 (8%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+
Sbjct: 122 ISELREGYNTIVGEQG-------------------AGLSGGQRQRIAIARALVNNPKILI 162
Query: 638 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697
DEATSALD +E I+ + + RT I IA RL+T D IIV+E GK++EQG H
Sbjct: 163 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHK 222
Query: 698 DLLTKA-GRYAQLWGQQNN 715
+LL++ Y+ L+ Q++
Sbjct: 223 ELLSEPESLYSYLYQLQSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 174 bits (440), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 100/259 (38%), Positives = 144/259 (55%), Gaps = 21/259 (8%)
Query: 459 IQFDNVHFSYLTERK-ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
I F N+ F Y + ILD ++ + G+ + IVG SGSGKST+ +L+ R + +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
IDG D+ LR+ +GVV QD VL N +I NI + E+V AA+ A HD
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I Y+T+VGE+G LSGG++QR+A+ARA + P IL+
Sbjct: 128 ISELREGYNTIVGEQG-------------------AGLSGGQRQRIAIARALVNNPKILI 168
Query: 638 CDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697
DEATSALD +E I+ + + RT I IA RL+T D IIV+E GK++EQG H
Sbjct: 169 FDEATSALDYESEHVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHK 228
Query: 698 DLLTKA-GRYAQLWGQQNN 715
+LL++ Y+ L+ Q++
Sbjct: 229 ELLSEPESLYSYLYQLQSD 247
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 95/252 (37%), Positives = 141/252 (55%), Gaps = 20/252 (7%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522
+V F+Y +IL +SF +A G SG GKSTI LL R + +G I IDGQ
Sbjct: 6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 523 ICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNF 581
I ++LE+ R IG V QD+ + TI N+ YG T+E+++ A + N
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEA 641
P + +T VGERG+K +SGG++QR+A+ARAFL+ P IL+ DEA
Sbjct: 126 PDQLNTEVGERGVK-------------------ISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 642 TSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT 701
T++LDS +E+ + AL SL RT++ IAHRL+T + D+I +E G++ G H++L+
Sbjct: 167 TASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA 226
Query: 702 KAGRYAQLWGQQ 713
YA+ +Q
Sbjct: 227 THPLYAKYVSEQ 238
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 148 bits (374), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/261 (34%), Positives = 137/261 (52%), Gaps = 25/261 (9%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALAR 627
A + HD I FP Y T VGE G + LSGG++Q VALAR
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQ-------------------LSGGQRQAVALAR 169
Query: 628 AFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVL 685
A ++ P +L+ D+ATSALD+ + + L +RT + I H+L+ A + I+ L
Sbjct: 170 ALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFL 229
Query: 686 ENGKVIEQGSHDDLLTKAGRY 706
+ G V EQG+H L+ + G Y
Sbjct: 230 KEGSVCEQGTHLQLMERGGCY 250
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/261 (34%), Positives = 135/261 (51%), Gaps = 25/261 (9%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALAR 627
A + HD I FP Y T VGE G + LSGG++Q VALAR
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQ-------------------LSGGQRQAVALAR 169
Query: 628 AFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVL 685
A ++ P +L+ D ATSALD+ + + L +RT + I +L+ A + I+ L
Sbjct: 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFL 229
Query: 686 ENGKVIEQGSHDDLLTKAGRY 706
+ G V EQG+H L+ + G Y
Sbjct: 230 KEGSVCEQGTHLQLMERGGCY 250
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 139/276 (50%), Gaps = 28/276 (10%)
Query: 451 PLNLKGGSIQFDNVHFSYLTERKIL--DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PL+L+G +QF +V F+Y +L G++F + G+ A+VG +GSGKST+ LL
Sbjct: 8 PLHLEG-LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL 66
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYD 567
+ G + +DG+ + + L + + V Q+ +F ++ NI YG T EE+
Sbjct: 67 YQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITA 126
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALAR 627
AA ++ H I P Y T V E G + LSGG++Q VALAR
Sbjct: 127 AAVKSGAHSFISGLPQGYDTEVDEAGSQ-------------------LSGGQRQAVALAR 167
Query: 628 AFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVL 685
A ++ P +L+ D+ATSALD+ ++ ++ L +R+ + I L+ Q D I+ L
Sbjct: 168 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFL 227
Query: 686 ENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAID 721
E G + E G+H L+ K G Y W ADA +
Sbjct: 228 EGGAIREGGTHQQLMEKKGCY---WAMVQAPADAPE 260
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 87/261 (33%), Positives = 134/261 (51%), Gaps = 25/261 (9%)
Query: 451 PLNLKGGSIQFDNVHFSYLTER--KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508
PLN+KG ++F +V F+Y ++L G++F + GK A+VG +GSGKST+ LL
Sbjct: 10 PLNMKG-LVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68
Query: 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYD 567
+ G + +DG+ + + L + V Q+ +LF + NI YG + T EE+
Sbjct: 69 YQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITA 128
Query: 568 AARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALAR 627
A + HD I FP Y T VGE G + L+ G++Q VALAR
Sbjct: 129 VAMESGAHDFISGFPQGYDTEVGETGNQ-------------------LAVGQRQAVALAR 169
Query: 628 AFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVL 685
A ++ P +L+ D ATSALD+ + + L +RT + I +L+ A + I+ L
Sbjct: 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFL 229
Query: 686 ENGKVIEQGSHDDLLTKAGRY 706
+ G V EQG+H L+ + G Y
Sbjct: 230 KEGSVCEQGTHLQLMERGGCY 250
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 81/256 (31%), Positives = 124/256 (48%), Gaps = 39/256 (15%)
Query: 458 SIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
SI N F++ ++ L+G++F +P G VA+VG G GKS++L L D G +
Sbjct: 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 517 RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRA-AIH 575
I G S+ VPQ + ND++ NI +G EE Y + +A A+
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFG--CQLEEPYYRSVIQACALL 107
Query: 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPI 635
+ P+ T +GE+G V+LSGG+KQRV+LARA I
Sbjct: 108 PDLEILPSGDRTEIGEKG-------------------VNLSGGQKQRVSLARAVYSNADI 148
Query: 636 LLCDEATSALDSTTEAEILNAL---KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIE 692
L D+ SA+D+ I + K + N+T I + H ++ Q D IIV+ GK+ E
Sbjct: 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISE 208
Query: 693 QGSHDDLLTKAGRYAQ 708
GS+ +LL + G +A+
Sbjct: 209 MGSYQELLARDGAFAE 224
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 118/247 (47%), Gaps = 27/247 (10%)
Query: 446 RDNAMPLNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503
+D+ P GG + ++ Y TE IL+ +SF + G+ V ++G +GSGKST+L
Sbjct: 10 KDDIWP---SGGQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEE 563
R +T G I+IDG +TLE RK+ GV+PQ +F+ T N+ + +++
Sbjct: 66 AFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQ 123
Query: 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRV 623
E++ A + I FP K V+ + G LS G KQ +
Sbjct: 124 EIWKVADEVGLRSVIEQFPGKLDFVLVDGG-------------------CVLSHGHKQLM 164
Query: 624 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 683
LAR+ L ILL DE ++ LD T I LK + T I R+ ++CD+ +
Sbjct: 165 CLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFL 224
Query: 684 VLENGKV 690
V+E KV
Sbjct: 225 VIEENKV 231
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/227 (35%), Positives = 118/227 (51%), Gaps = 33/227 (14%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 532 RKSIGVVPQD-TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
R+ IG++ Q +L + T+F N+ A+ + N P V
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNV-------------------ALPLELDNTPKDE---VK 118
Query: 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 650
R + SL+ + K + P +LSGG+KQRVA+ARA P +LLCDEATSALD T
Sbjct: 119 RRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 651 AEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQ 693
IL LK + N R T + I H + + CD + V+ NG++IEQ
Sbjct: 177 RSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQ 222
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 28/236 (11%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLES 530
++L G++ + G+ V ++G SGSGKST LR L D G I IDG ++ + L
Sbjct: 17 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 76
Query: 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
+R+ +G+V Q LF T+ +NI + +V R A AK ++
Sbjct: 77 VREEVGMVFQRFNLFPHMTVLNNITLAPM-----KVRKWPREKA--------EAKAMELL 123
Query: 590 GERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 649
+ GLK ++ Y SLSGG+ QRVA+ARA P I+L DE TSALD
Sbjct: 124 DKVGLKDKAHAYPD----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 173
Query: 650 EAEILNALKSLAN-NRTSIFIAHRLTTAMQC-DEIIVLENGKVIEQGSHDDLLTKA 703
E+L+ +K LAN T + + H + A + D ++ ++ G +IE+G +DL +
Sbjct: 174 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 229
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 120/236 (50%), Gaps = 28/236 (11%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLES 530
++L G++ + G+ V ++G SGSGKST LR L D G I IDG ++ + L
Sbjct: 38 EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNK 97
Query: 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589
+R+ +G+V Q LF T+ +NI + +V R A AK ++
Sbjct: 98 VREEVGMVFQRFNLFPHMTVLNNITLAPM-----KVRKWPREKA--------EAKAMELL 144
Query: 590 GERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 649
+ GLK ++ Y SLSGG+ QRVA+ARA P I+L DE TSALD
Sbjct: 145 DKVGLKDKAHAYPD----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 194
Query: 650 EAEILNALKSLAN-NRTSIFIAHRLTTAMQC-DEIIVLENGKVIEQGSHDDLLTKA 703
E+L+ +K LAN T + + H + A + D ++ ++ G +IE+G +DL +
Sbjct: 195 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 33/229 (14%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 532 RKSIGVVPQD-TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
R+ IG++ Q +L + T+F N+ A+ + N P V
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNV-------------------ALPLELDNTPKDE---VK 141
Query: 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 650
R + SL+ + K + P +LSGG+KQRVA+ARA P +LLCD+ATSALD T
Sbjct: 142 RRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199
Query: 651 AEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGS 695
IL LK + N R T + I H + + CD + V+ NG++IEQ +
Sbjct: 200 RSILELLKDI-NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 116/227 (51%), Gaps = 33/227 (14%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
L+ VS VPAG+ ++G SG+GKST++R + GS+ +DGQ++ E L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 532 RKSIGVVPQD-TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
R+ IG + Q +L + T+F N+ A+ + N P V
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNV-------------------ALPLELDNTPKDE---VK 141
Query: 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 650
R + SL+ + K + P +LSGG+KQRVA+ARA P +LLCD+ATSALD T
Sbjct: 142 RRVTELLSLVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATT 199
Query: 651 AEILNALKSLANNR---TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQ 693
IL LK + N R T + I H + CD + V+ NG++IEQ
Sbjct: 200 RSILELLKDI-NRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQ 245
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 37/247 (14%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
LD +S V +G+ I+G +G+GK+ L L+ SG I +DG+D+ +++ E +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 535 IGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I V Q+ LF + N+ +G R I D +R
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG------------MRMKKIKDP-------------KRV 108
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEA-- 651
L L I+ L+R PL +LSGGE+QRVALARA + P ILL DE SALD T+
Sbjct: 109 LDTARDLKIEHLLDRNPL--TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENA 166
Query: 652 -EILNALKSLANNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA--GRYA 707
E+L+ L N T + I H T A + D I V+ +GK+I+ G +++ K GR A
Sbjct: 167 REMLSVLHK-KNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
Query: 708 QLWGQQN 714
G +N
Sbjct: 226 SFVGFEN 232
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 128/260 (49%), Gaps = 36/260 (13%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534
L+ ++ + G+ +A++G SGSGKST+L + + SG I D +D+ E L ++
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE--LPPKDRN 76
Query: 535 IGVVPQDTVLFND-TIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591
+G+V Q+ L+ T++ NI + A EE+ R A
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA------------------ 118
Query: 592 RGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEA 651
+L+I K L R P LSGG++QRVA+ARA +K P +LL DE S LD+
Sbjct: 119 ------KMLHIDKLLNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRL 170
Query: 652 EILNALKSLANNR--TSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQ 708
E+ LK L T++++ H A+ D I V+ G++++ G+ D++ K +Y
Sbjct: 171 EVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP-KYKF 229
Query: 709 LWG-QQNNTADAIDAAVKLG 727
+ G N + ++A V+ G
Sbjct: 230 VGGFLGNPPMNFVEAKVEDG 249
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 116/243 (47%), Gaps = 42/243 (17%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y + K +DGVSF V G+ VA++G SG GK+T L +L + SG I D D+
Sbjct: 11 KYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVN 68
Query: 527 TLESLRKSIGVVPQDTVLFND-TIFHNI----RYGRLSATEEE--VYDAARRAAIHDTIM 579
+ + +G+V Q+ L+ T+F NI R R+S E E V + AR+
Sbjct: 69 DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK-------- 120
Query: 580 NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCD 639
L I L+R+P LSGG++QRVALARA +K P +LL D
Sbjct: 121 --------------------LLIDNLLDRKP--TQLSGGQQQRVALARALVKQPKVLLFD 158
Query: 640 EATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSH 696
E S LD+ + +K L TS+++ H AM I V GK+++ G+
Sbjct: 159 EPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTP 218
Query: 697 DDL 699
D++
Sbjct: 219 DEV 221
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 32/252 (12%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
+I+F V Y + + GVSF + G+ V ++G SGSGK+TILRL+ G +
Sbjct: 14 TIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I G+ + + L ++++G+V Q+ LF T++ N+ +G R ++ DA R +
Sbjct: 74 IGGKRVTD--LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131
Query: 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPI 635
+ ++ R P LSGG++QRVALARA P +
Sbjct: 132 -----------------------FMRLESYANRFPH--ELSGGQQQRVALARALAPRPQV 166
Query: 636 LLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692
LL DE +A+D+ E+ ++ + + TS+F+ H A++ D ++VL G V +
Sbjct: 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQ 226
Query: 693 QGSHDDLLTKAG 704
G+ +++ K G
Sbjct: 227 FGTPEEVYEKPG 238
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 33/230 (14%)
Query: 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDT 548
++G +G+GKS L L+ G +R++G DI + E R+ IG VPQD LF + +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608
++ NI YG + + + + E+ L I L+R
Sbjct: 87 VYRNIAYG-----------------LRNVERVERDRRVREMAEK-------LGIAHLLDR 122
Query: 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTS 666
+P LSGGE+QRVALARA + P +LL DE SA+D T+ ++ L+ + +
Sbjct: 123 KP--ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPI 180
Query: 667 IFIAHRLT-TAMQCDEIIVLENGKVIEQGSHDDLLT-KAGRYAQLWGQQN 714
+ + H L AM DE+ V+ NG+++E+G +L + K G A+ +N
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARN 230
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 122/256 (47%), Gaps = 38/256 (14%)
Query: 457 GSIQFDNV----HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512
G I+ NV H E+K L+ VS V+ G+ + + G +GSGKST+L+++ +
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 513 SGSIRIDGQDICEVTLESLRKSIGVV---PQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569
SG + DG+ +R++IG+ P+D F + +F + +
Sbjct: 63 SGDVLYDGE---RKKGYEIRRNIGIAFQYPEDQ-FFAERVFDEVAF-------------- 104
Query: 570 RRAAIHDTIMNF-PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARA 628
+ NF P + + ++ ++ L + K +R P F LSGGEK+RVA+A
Sbjct: 105 -------AVKNFYPDRDPVPLVKKAMEFVGLDFDSFK-DRVPFF--LSGGEKRRVAIASV 154
Query: 629 FLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM-QCDEIIVLE 686
+ P IL+ DE LD + ++L ++ +T I I+H + T + D ++VLE
Sbjct: 155 IVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLE 214
Query: 687 NGKVIEQGSHDDLLTK 702
GK + G+ + L K
Sbjct: 215 KGKKVFDGTRMEFLEK 230
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 117/244 (47%), Gaps = 34/244 (13%)
Query: 465 HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524
H E+K L+ VS V+ G+ + + G +GSGKST+L+++ + SG + DG+
Sbjct: 13 HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--- 69
Query: 525 EVTLESLRKSIGVV---PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581
+R++IG+ P+D F + +F + + + NF
Sbjct: 70 RKKGYEIRRNIGIAFQYPEDQ-FFAERVFDEVAF---------------------AVKNF 107
Query: 582 -PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDE 640
P + + ++ ++ L + K +R P F LSGGEK+RVA+A + P IL+ DE
Sbjct: 108 YPDRDPVPLVKKAMEFVGLDFDSFK-DRVPFF--LSGGEKRRVAIASVIVHEPDILILDE 164
Query: 641 ATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDD 698
LD + ++L ++ +T I I+H + T + D ++VLE GK + G+ +
Sbjct: 165 PLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224
Query: 699 LLTK 702
L K
Sbjct: 225 FLEK 228
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 28/224 (12%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI---CEVTLE 529
+IL G+S V G+ V+I+G SGSGKST+L +L G + ++G+++ E L
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELS 77
Query: 530 SLR-KSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588
LR + +G V Q FH + L+A E + + M P K +
Sbjct: 78 LLRNRKLGFVFQ---------FHYL-IPELTALENVIVPMLK--------MGKPKKEAK- 118
Query: 589 VGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDST 648
ERG S L + KL R+P LSGGE+QRVA+ARA P +L DE T LDS
Sbjct: 119 --ERGEYLLSELGLGDKLSRKPY--ELSGGEQQRVAIARALANEPILLFADEPTGNLDSA 174
Query: 649 TEAEILNALKSLANNRTSI-FIAHRLTTAMQCDEIIVLENGKVI 691
+++ + TSI + H A + +++GKV+
Sbjct: 175 NTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 36/241 (14%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCD 639
F + +TV+GE G V+LSGG++ R++LARA K + L D
Sbjct: 145 KFAEQDNTVLGEGG-------------------VTLSGGQRARISLARAVYKDADLYLLD 185
Query: 640 EATSALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 698
LD TE ++ + + L N+T I + ++ + D+I++L G G+ +
Sbjct: 186 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSE 245
Query: 699 L 699
L
Sbjct: 246 L 246
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 36/241 (14%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCD 639
F + +TV+GE G V+LSGG++ R++LARA K + L D
Sbjct: 145 KFAEQDNTVLGEGG-------------------VTLSGGQRARISLARAVYKDADLYLLD 185
Query: 640 EATSALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 698
LD TE ++ + + L N+T I + ++ + D+I++L G G+ +
Sbjct: 186 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSE 245
Query: 699 L 699
L
Sbjct: 246 L 246
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 77.0 bits (188), Expect = 3e-14, Method: Composition-based stats.
Identities = 69/243 (28%), Positives = 114/243 (46%), Gaps = 32/243 (13%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
I+ NV +Y +I L V+ + G+ V+I+G SGSGKST+L ++ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 516 IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575
+ ID ++ + L K IR ++ ++ A+
Sbjct: 62 VYIDNIKTNDLDDDELTK-------------------IRRDKIGFVFQQFNLIPLLTALE 102
Query: 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQ-KKLERRPLFVS-----LSGGEKQRVALARAF 629
+ + KY + + R+L ++ +LE R F + LSGG++QRVA+ARA
Sbjct: 103 NVELPLIFKYRGAMSGEERRKRALECLKMAELEER--FANHKPNQLSGGQQQRVAIARAL 160
Query: 630 LKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQCDEIIVLEN 687
PPI+L D+ T ALDS T +I+ LK L + +T + + H + A + II L++
Sbjct: 161 ANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
Query: 688 GKV 690
G+V
Sbjct: 221 GEV 223
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 115/250 (46%), Gaps = 43/250 (17%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ + ++++Y L G++ + G+ AI+G +G GKST+ + SG I
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 519 DGQ--DICEVTLESLRKSIGVVPQD--TVLFNDTIFHNIRYG--RLSATEEE----VYDA 568
D + D + LR+SIG+V QD LF+ +++ ++ +G + E+E V +A
Sbjct: 68 DNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNA 127
Query: 569 ARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARA 628
+R I + L+ +P LS G+K+RVA+A
Sbjct: 128 LKRTGI-----------------------------EHLKDKPTH-CLSFGQKKRVAIAGV 157
Query: 629 FLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRL-TTAMQCDEIIVL 685
+ P +L+ DE T+ LD +EI+ L + T I H + + CD + V+
Sbjct: 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVM 217
Query: 686 ENGKVIEQGS 695
+ G+VI QG+
Sbjct: 218 KEGRVILQGN 227
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 116/243 (47%), Gaps = 32/243 (13%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
++ NV +Y +I L V+ + G+ V+I+G SGSGKST+L ++ G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 516 IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575
+ ID ++ + L K + +D + F +F L A+
Sbjct: 62 VYIDNIKTNDLDDDELTK----IRRDKIGF---VFQQFNLIPLLT------------ALE 102
Query: 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQ-KKLERRPLFVS-----LSGGEKQRVALARAF 629
+ + KY + + R+L ++ +LE R F + LSGG++QRVA+ARA
Sbjct: 103 NVELPLIFKYRGAMSGEERRKRALECLKMAELEER--FANHKPNQLSGGQQQRVAIARAL 160
Query: 630 LKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQCDEIIVLEN 687
PPI+L D+ T ALDS T +I+ LK L + +T + + H + A + II L++
Sbjct: 161 ANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
Query: 688 GKV 690
G+V
Sbjct: 221 GEV 223
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 36/241 (14%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCD 639
F + +TV+GE G V+LSGG++ R++LARA K + L D
Sbjct: 145 KFAEQDNTVLGEGG-------------------VTLSGGQRARISLARAVYKDADLYLLD 185
Query: 640 EATSALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 698
LD TE ++ + + L N+T I + ++ + D+I++L G G+ +
Sbjct: 186 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSE 245
Query: 699 L 699
L
Sbjct: 246 L 246
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 107/241 (44%), Gaps = 36/241 (14%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI G +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDIT 144
Query: 580 NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCD 639
F + +TV+GE G V+LSGG++ R++LARA K + L D
Sbjct: 145 KFAEQDNTVLGEGG-------------------VTLSGGQRARISLARAVYKDADLYLLD 185
Query: 640 EATSALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 698
LD TE ++ + + L N+T I + ++ + D+I++L G G+ +
Sbjct: 186 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSE 245
Query: 699 L 699
L
Sbjct: 246 L 246
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 34/227 (14%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 82
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 83 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
++LSGG++ R++LARA K + L D LD TE EI
Sbjct: 141 -------------------ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 181
Query: 654 L-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 699
+ + L N+T I + ++ + D+I++L G G+ +L
Sbjct: 182 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 70/243 (28%), Positives = 110/243 (45%), Gaps = 32/243 (13%)
Query: 459 IQFDNVHFSYLTERKI---LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
I+ NV +Y +I L V+ + G+ V+I G SGSGKST L ++ G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 516 IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575
+ ID ++ + L K IR ++ ++ A+
Sbjct: 62 VYIDNIKTNDLDDDELTK-------------------IRRDKIGFVFQQFNLIPLLTALE 102
Query: 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQK-KLERRPLFVS-----LSGGEKQRVALARAF 629
+ + KY + R+L ++ +LE R F + LSGG++QRVA+ARA
Sbjct: 103 NVELPLIFKYRGAXSGEERRKRALECLKXAELEER--FANHKPNQLSGGQQQRVAIARAL 160
Query: 630 LKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQCDEIIVLEN 687
PPI+L DE T ALDS T +I LK L + +T + + H + A + II L++
Sbjct: 161 ANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKD 220
Query: 688 GKV 690
G+V
Sbjct: 221 GEV 223
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 34/227 (14%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
++LSGG++ R++LARA K + L D LD TE EI
Sbjct: 129 -------------------ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 654 L-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 699
+ + L N+T I + ++ + D+I++L G G+ +L
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 111/233 (47%), Gaps = 26/233 (11%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528
+ +++IL G+SF + G+ ++G +G+GK+T LR++ SG + + G+++ E
Sbjct: 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH 84
Query: 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588
E +RK I +P++ + + I Y R A F A S+
Sbjct: 85 E-VRKLISYLPEEAGAYRN--MQGIEYLRFVA-------------------GFYASSSSE 122
Query: 589 VGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDST 648
+ E + + + +K++ R + S G +++ +ARA + P + + DE TS LD
Sbjct: 123 IEEMVERATEIAGLGEKIKDR--VSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 649 TEAEILNALKSLANNRTSIFIA--HRLTTAMQCDEIIVLENGKVIEQGSHDDL 699
E+ LK + +I ++ + L CD I ++ NG ++E G+ ++L
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 37/243 (15%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+ F N FS L +L ++F + G+ +A+ G++G+GK+++L ++ + G I+
Sbjct: 40 SLSFSN--FSLLG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
G+ I Q + + TI NI G +S E + + +
Sbjct: 97 HSGR-------------ISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEED 142
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I F K + V+GE G ++LSGG++ R++LARA K + L
Sbjct: 143 ISKFAEKDNIVLGEGG-------------------ITLSGGQRARISLARAVYKDADLYL 183
Query: 638 CDEATSALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 696
D LD TE EI + + L N+T I + ++ + D+I++L G G+
Sbjct: 184 LDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 243
Query: 697 DDL 699
+L
Sbjct: 244 SEL 246
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 106/233 (45%), Gaps = 30/233 (12%)
Query: 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537
+S V G+ + ++G SG GK+T LR++ + G I I + + + K I V
Sbjct: 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADP-----EKGIFV 76
Query: 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV----VGERG 593
P+D R A + Y ++D I FP K V + +R
Sbjct: 77 PPKD---------------RDIAMVFQSYALYPHMTVYDNI-AFPLKLRKVPRQEIDQRV 120
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
+ LL + + L R+P LSGG++QRVAL RA ++ P + L DE S LD+ +
Sbjct: 121 REVAELLGLTELLNRKPR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178
Query: 654 LNALKSLANNR--TSIFIAHRLTTAMQCDEIIVLENGKVIEQ-GSHDDLLTKA 703
LK L T+I++ H AM + I + N V++Q GS D++ K
Sbjct: 179 RAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 106/241 (43%), Gaps = 37/241 (15%)
Query: 462 DNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+NV FS+L +L ++ + G+ +AI G++GSGK+++L L+ + G I+
Sbjct: 39 NNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 98
Query: 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579
G+ + Q + + TI NI +S E + + I
Sbjct: 99 GR-------------VSFCSQFSWIMPGTIKENII--GVSYDEYRYKSVVKACQLQQDIT 143
Query: 580 NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCD 639
F + +TV+GE G V+LSGG++ R++LARA K + L D
Sbjct: 144 KFAEQDNTVLGEGG-------------------VTLSGGQRARISLARAVYKDADLYLLD 184
Query: 640 EATSALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 698
LD TE ++ + + L N+T I + ++ + D+I++L G G+ +
Sbjct: 185 SPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSE 244
Query: 699 L 699
L
Sbjct: 245 L 245
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 116/264 (43%), Gaps = 57/264 (21%)
Query: 459 IQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--- 512
I+ +++ YL K DG+S + AIVG S SGKSTI+ + ++ +
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 513 -SGSIRIDGQDICEVTLESLRK----SIGVVPQDTVL-----------FNDTI-FHNIRY 555
SG + G+D+ + E LRK I +VPQ F DT+ H +R+
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRW 124
Query: 556 GRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSL-LYIQKKLERRPLFVS 614
+S ++ + K R + L + L PL
Sbjct: 125 S----------------------------HSELIEKASEKLRMVRLNPEAVLNSYPL--Q 154
Query: 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHR 672
LSGG KQRV +A A L P +L+ DE TSALD T+A I+ LK L T IF+ H
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHD 214
Query: 673 LTTAMQ-CDEIIVLENGKVIEQGS 695
+ A + D++ V+ G ++E S
Sbjct: 215 IAVAAELADKVAVIYGGNLVEYNS 238
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 33/247 (13%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV---------- 109
Query: 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPI 635
+ +R + +L + L+R+P +LSGG++QRVA+ R + P +
Sbjct: 110 -------------INQRVNQVAEVLQLAHLLDRKPK--ALSGGQRQRVAIGRTLVAEPSV 154
Query: 636 LLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692
L DE S LD+ ++ + L RT I++ H AM D+I+VL+ G+V +
Sbjct: 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
Query: 693 QGSHDDL 699
G +L
Sbjct: 215 VGKPLEL 221
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 38/243 (15%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+ F N FS L +L ++F + G+ +A+ G++G+GK+++L ++ + G I+
Sbjct: 40 SLSFSN--FSLLG-TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 96
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577
G+ I Q++ + TI NI +S E + + +
Sbjct: 97 HSGR-------------ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEED 141
Query: 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637
I F K + V+GE G ++LSGG++ R++LARA K + L
Sbjct: 142 ISKFAEKDNIVLGEGG-------------------ITLSGGQRARISLARAVYKDADLYL 182
Query: 638 CDEATSALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 696
D LD TE EI + + L N+T I + ++ + D+I++L G G+
Sbjct: 183 LDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTF 242
Query: 697 DDL 699
+L
Sbjct: 243 SEL 245
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 35/227 (15%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q++ + TI NI +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQNSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
++LSGG++ R++LARA K + L D LD TE EI
Sbjct: 158 -------------------ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 654 L-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 699
+ + L N+T I + ++ + D+I++L G G+ +L
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 117/247 (47%), Gaps = 33/247 (13%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV---------- 109
Query: 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPI 635
+ +R + +L + L+R+P +LSGG++QRVA+ R + P +
Sbjct: 110 -------------INQRVNQVAEVLQLAHLLDRKPK--ALSGGQRQRVAIGRTLVAEPSV 154
Query: 636 LLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692
L DE S LD+ ++ + L RT I++ H AM D+I+VL+ G+V +
Sbjct: 155 FLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
Query: 693 QGSHDDL 699
G +L
Sbjct: 215 VGKPLEL 221
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 118/253 (46%), Gaps = 39/253 (15%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
++ ++H+ ++ ++ +++ VS + +G+ VAI+G +G+GKST+LRLL G +
Sbjct: 12 LEASHLHY-HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70
Query: 519 DGQDICEVTLESLRKSIGVVPQDTVL-FNDTIFHNIRYGRLSATEEEVYDAAR-RAAIHD 576
GQ++ ++L ++ V+ Q + L F ++ I+ GR Y ++ R A+
Sbjct: 71 LGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAP------YGGSQDRQALQQ 124
Query: 577 TIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLK----- 631
+ + L Q+ + LSGGE+QRV LAR +
Sbjct: 125 VMA---------------QTDCLALAQRD------YRVLSGGEQQRVQLARVLAQLWQPQ 163
Query: 632 -APPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLT-TAMQCDEIIVLEN 687
P L DE TSALD + L L+ L + H L A+ D I++L
Sbjct: 164 PTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQ 223
Query: 688 GKVIEQGSHDDLL 700
GK++ G+ +++L
Sbjct: 224 GKLVACGTPEEVL 236
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 117/247 (47%), Gaps = 33/247 (13%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
S+Q NV ++ E + ++ + G+ V VG SG GKST+LR++ SG +
Sbjct: 3 SVQLQNVTKAW-GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF 61
Query: 518 IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYG-RLSATEEEVYDAARRAAIH 575
I + + + + +G+V Q L+ ++ N+ +G +L+ ++EV
Sbjct: 62 IGEKRMNDTP--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEV---------- 109
Query: 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPI 635
+ +R + +L + L+R+P +LSGG++QRVA+ R + P +
Sbjct: 110 -------------INQRVNQVAEVLQLAHLLDRKPK--ALSGGQRQRVAIGRTLVAEPSV 154
Query: 636 LLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692
L D+ S LD+ ++ + L RT I++ H AM D+I+VL+ G+V +
Sbjct: 155 FLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ 214
Query: 693 QGSHDDL 699
G +L
Sbjct: 215 VGKPLEL 221
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 34/245 (13%)
Query: 459 IQFDNVHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514
I+ V LT+R ++ ++ + G+ + ++G SG GK+T LR++ + G
Sbjct: 7 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 66
Query: 515 SIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAA 573
I +D+ L ++I +V Q ++ T++ NI A
Sbjct: 67 RIYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENI-------------------A 105
Query: 574 IHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP 633
I FP + +R LL I++ L R P LSGG++QRVA+ARA + P
Sbjct: 106 FPLKIKKFPKDE---IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVVEP 160
Query: 634 PILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQC-DEIIVLENGKV 690
+LL DE S LD+ + +K L T+I++ H AM D I V+ G++
Sbjct: 161 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220
Query: 691 IEQGS 695
++ GS
Sbjct: 221 LQIGS 225
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/245 (27%), Positives = 111/245 (45%), Gaps = 34/245 (13%)
Query: 459 IQFDNVHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514
I+ V LT+R ++ ++ + G+ + ++G SG GK+T LR++ + G
Sbjct: 8 IKMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG 67
Query: 515 SIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAA 573
I +D+ L ++I +V Q ++ T++ NI A
Sbjct: 68 RIYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENI-------------------A 106
Query: 574 IHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP 633
I FP + +R LL I++ L R P LSGG++QRVA+ARA + P
Sbjct: 107 FPLKIKKFPKDE---IDKRVRWAAELLQIEELLNRYP--AQLSGGQRQRVAVARAIVVEP 161
Query: 634 PILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQC-DEIIVLENGKV 690
+LL DE S LD+ + +K L T+I++ H AM D I V+ G++
Sbjct: 162 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 221
Query: 691 IEQGS 695
++ GS
Sbjct: 222 LQIGS 226
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 35/227 (15%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 70
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +S E + + + I F K + V+GE G
Sbjct: 71 -ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
++LSGG++ R++LARA K + L D LD TE EI
Sbjct: 128 -------------------ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 168
Query: 654 L-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 699
+ + L N+T I + ++ + D+I++L G G+ +L
Sbjct: 169 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 101/227 (44%), Gaps = 34/227 (14%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +G +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
++LS G++ +++LARA K + L D LD TE EI
Sbjct: 159 -------------------ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEI 199
Query: 654 L-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 699
+ + L N+T I + ++ + D+I++L G G+ +L
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 68.9 bits (167), Expect = 8e-12, Method: Composition-based stats.
Identities = 57/230 (24%), Positives = 101/230 (43%), Gaps = 28/230 (12%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RK 533
+ G+ VP G+ V ++G +G+GK+T L + G I +GQDI + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 534 SIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGER 592
I +VP+ +F + T++ N+ G Y+ + I +R
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXG--------AYNRKDKEGI----------------KR 117
Query: 593 GLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAE 652
L+ L+ + K + L +LSGGE+Q +A+ RA P +L DE + L +E
Sbjct: 118 DLEWIFSLFPRLKERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSE 177
Query: 653 ILNALKSLANNRTSIFIAHR--LTTAMQCDEIIVLENGKVIEQGSHDDLL 700
+ ++ + T+I + + L VLE G+++ +G +LL
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 104/239 (43%), Gaps = 21/239 (8%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581
L G+V PQ L T+ N+ G ++ E + + I
Sbjct: 75 EPAELY-HYGIVRTFQTPQP--LKEMTVLENLLIGEINPGESPLNSLFYKKWI------- 124
Query: 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEA 641
P + V E+ K L + +R+ LSGG+ + V + RA + P +++ DE
Sbjct: 125 PKEEEMV--EKAFKILEFLKLSHLYDRKA--GELSGGQMKLVEIGRALMTNPKMIVMDEP 180
Query: 642 TSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 698
+ + +I N + L A T + I HRL + D + V+ NG++I +G ++
Sbjct: 181 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 103/239 (43%), Gaps = 21/239 (8%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581
L G+V PQ L T+ N+ G + E + + I
Sbjct: 75 EPAELY-HYGIVRTFQTPQP--LKEMTVLENLLIGEICPGESPLNSLFYKKWI------- 124
Query: 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEA 641
P + V E+ K L + +R+ LSGG+ + V + RA + P +++ DE
Sbjct: 125 PKEEEMV--EKAFKILEFLKLSHLYDRKA--GELSGGQMKLVEIGRALMTNPKMIVMDEP 180
Query: 642 TSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 698
+ + +I N + L A T + I HRL + D + V+ NG++I +G ++
Sbjct: 181 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 107/247 (43%), Gaps = 36/247 (14%)
Query: 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517
++ +N+ F Y E + ++F + G +A++G +G GKST+L LL G I
Sbjct: 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 518 IDGQDICEVTLESLRKSIGVVPQD-TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHD 576
+ +SIG VPQ + F ++ + GR + H
Sbjct: 64 V-------------YQSIGFVPQFFSSPFAYSVLDIVLMGR---------------STHI 95
Query: 577 TIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPIL 636
P + V + L +L ++ K+ F SLSGG++Q + +ARA ++
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKRE-----FTSLSGGQRQLILIARAIASECKLI 150
Query: 637 LCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 694
L DE TSALD + +L+ L LA N T +F H+ + +L N + + G
Sbjct: 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFG 210
Query: 695 SHDDLLT 701
++LT
Sbjct: 211 ETRNILT 217
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 111/238 (46%), Gaps = 38/238 (15%)
Query: 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------ 526
++L GVS AG ++I+G+SGSGKST LR + G+I ++GQ+I V
Sbjct: 20 EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQ 79
Query: 527 -------TLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTI 578
L LR + +V Q L++ T+ N+ + +DA RA
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERAL----- 134
Query: 579 MNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLC 638
KY VG ++ + P V LSGG++QRV++ARA P +LL
Sbjct: 135 -----KYLAKVG----------IDERAQGKYP--VHLSGGQQQRVSIARALAMEPDVLLF 177
Query: 639 DEATSALDSTTEAEILNALKSLANN-RTSIFIAHRLTTAMQC-DEIIVLENGKVIEQG 694
DE TSALD E+L ++ LA +T + + H + A +I L GK+ E+G
Sbjct: 178 DEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 43/238 (18%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
LD V+ + G+ I+G SG+GK+T +R++ +G + D + + ++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 532 RKSIGVVPQDTVLF-NDTIFHNIRYG--RLSATEEE----VYDAARRAAIHDTIMNFPAK 584
+ IG+V Q L+ N T F NI + + ++EE V + A+ IH + +FP +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 585 YSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSA 644
LSGG++QRVALARA +K P +LL DE S
Sbjct: 141 ------------------------------LSGGQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 645 LDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 699
LD+ +K + + T + ++H D + VL GK+++ G +DL
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 104/239 (43%), Gaps = 21/239 (8%)
Query: 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526
Y E K LDGVS V G I+G +GSGKST++ ++ G + + +DI
Sbjct: 15 KYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
Query: 527 TLESLRKSIGVV-----PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581
L G+V PQ L T+ N+ G ++ E + + I
Sbjct: 75 EPAELY-HYGIVRTFQTPQP--LKEMTVLENLLIGEINPGESPLNSLFYKKWI------- 124
Query: 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEA 641
P + V E+ K L + +R+ LSGG+ + V + RA + P +++ D+
Sbjct: 125 PKEEEMV--EKAFKILEFLKLSHLYDRKA--GELSGGQMKLVEIGRALMTNPKMIVMDQP 180
Query: 642 TSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 698
+ + +I N + L A T + I HRL + D + V+ NG++I +G ++
Sbjct: 181 IAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 120/248 (48%), Gaps = 38/248 (15%)
Query: 464 VHFSYLTER----KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519
+H +L++ +L+ +S + G+ + I+G SG GK+T+LR L SG I +
Sbjct: 5 LHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64
Query: 520 GQDICE--VTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHD 576
G+ I L + +G + Q+ VLF T++ NI YG + + R A+ +
Sbjct: 65 GKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLE 124
Query: 577 TIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPIL 636
+ G L GR Y + LSGG++QR ALARA P ++
Sbjct: 125 -----------LTGISELAGR---YPHE----------LSGGQQQRAALARALAPDPELI 160
Query: 637 LCDEATSALDSTTEAEI----LNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 691
L DE SALD +I + AL+ AN ++++F++H A+Q D I V++ G+++
Sbjct: 161 LLDEPFSALDEQLRRQIREDMIAALR--ANGKSAVFVSHDREEALQYADRIAVMKQGRIL 218
Query: 692 EQGSHDDL 699
+ S +L
Sbjct: 219 QTASPHEL 226
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 111/247 (44%), Gaps = 32/247 (12%)
Query: 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518
I+ ++V F Y + +L V+ GK +VG +GSGK+T+L++L +G I +
Sbjct: 12 IELNSVSFRYNGDY-VLKDVNAEFETGKIYVVVGKNGSGKTTLLKIL-AGLLAAAGEIFL 69
Query: 519 DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDT 577
DG L RK++G V F N + AT EE+V + + ++
Sbjct: 70 DGSPADPFLL---RKNVGYV-----------FQNPSSQIIGATVEEDVAFSLEIMGLDES 115
Query: 578 IM-NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPIL 636
M K +VG GL PL +LSGG+KQR+A+A + L
Sbjct: 116 EMRKRIKKVLELVGLSGLAAAD-----------PL--NLSGGQKQRLAIASMLARDTRFL 162
Query: 637 LCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 695
DE S LD ++ EI L+SL N + I + H L D I+ + NG + GS
Sbjct: 163 ALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGS 222
Query: 696 HDDLLTK 702
++ + +
Sbjct: 223 WEEFVER 229
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 43/238 (18%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---EVTLESL 531
LD V+ + G+ I+G SG+GK+T +R++ +G + D + + ++ +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 532 RKSIGVVPQDTVLF-NDTIFHNIRYG--RLSATEEE----VYDAARRAAIHDTIMNFPAK 584
+ IG+V Q L+ N T F NI + + ++EE V + A+ IH + +FP +
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140
Query: 585 YSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSA 644
LSG ++QRVALARA +K P +LL DE S
Sbjct: 141 ------------------------------LSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 645 LDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDL 699
LD+ +K + + T + ++H D + VL GK+++ G +DL
Sbjct: 171 LDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 35/227 (15%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533
+L ++F + G+ +A+ G++G+GK+++L ++ + G I+ G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593
I Q + + TI NI +S E + + + I F K + V+GE G
Sbjct: 101 -ISFCSQFSWIMPGTIKENII--GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
++LS G++ +++LARA K + L D LD TE EI
Sbjct: 158 -------------------ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEI 198
Query: 654 L-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 699
+ + L N+T I + ++ + D+I++L G G+ +L
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 103/233 (44%), Gaps = 30/233 (12%)
Query: 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537
+S + G+ + ++G SG GK+T LR + + G I I+ + + K + V
Sbjct: 25 LSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADP-----EKGVFV 79
Query: 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV----VGERG 593
P++ R A + Y ++D I FP K V + +R
Sbjct: 80 PPKE---------------RDVAXVFQSYALYPHXTVYDNIA-FPLKLRKVPKQEIDKRV 123
Query: 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653
+ L + + L R+P LSGG++QRVAL RA ++ P + L DE S LD+ +
Sbjct: 124 REVAEXLGLTELLNRKPR--ELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKX 181
Query: 654 LNALKSLANNR--TSIFIAH-RLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA 703
LK L T+I++ H ++ D I V G++ + G+ D++ K
Sbjct: 182 RAELKKLQRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKP 234
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 105/237 (44%), Gaps = 38/237 (16%)
Query: 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTL-ES 530
IL GV+ VVP G+ A++G +G+GKST+ ++L + G I +DG++I E++ E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590
RK + + Q V N L A R + A++ T V
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAK------LGREVGV--------AEFWTKVK 123
Query: 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE 650
K LL + R L SGGEK+R + + + P + DE S LD
Sbjct: 124 ----KALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD---- 175
Query: 651 AEILNALKSLAN--------NRTSIFIAH--RLTTAMQCDEIIVLENGKVIEQGSHD 697
++ALK +A N ++ I H R+ +Q D++ V+ +G+V+ G +
Sbjct: 176 ---IDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 115/244 (47%), Gaps = 31/244 (12%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDG 520
++H S + ++ IL G+S V G+ AI+G +GSGKST+ L ++ G++ G
Sbjct: 6 DLHVS-VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 64
Query: 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVY-----DAARRAAI 574
+D+ ++ P+D + IF +Y + + + +A R
Sbjct: 65 KDLLALS-----------PEDRA--GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG 111
Query: 575 HDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP 634
+T+ F + ++ E+ +LL + + L R + V SGGEK+R + + + P
Sbjct: 112 QETLDRF--DFQDLMEEK----IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPE 165
Query: 635 ILLCDEATSALDSTTEAEILNALKSLANNRTS-IFIAH--RLTTAMQCDEIIVLENGKVI 691
+ + DE+ S LD + + + SL + + S I + H R+ ++ D + VL G+++
Sbjct: 166 LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 225
Query: 692 EQGS 695
+ G
Sbjct: 226 KSGD 229
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 114/245 (46%), Gaps = 41/245 (16%)
Query: 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV--TLE 529
+ IL +S+ + G + G +G+GK+T+L +L SG++ + G+ +V + E
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAE 93
Query: 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAA---------IHDTIMN 580
++R+ IG V + ++ + G E V D A I D I N
Sbjct: 94 TVRQHIGFV-------SHSLLEKFQEG------ERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 581 FPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDE 640
+ +VG + + Y LS GEKQRV +ARA P +L+ DE
Sbjct: 141 EAHQLLKLVGXSAKAQQYIGY-------------LSTGEKQRVXIARALXGQPQVLILDE 187
Query: 641 ATSALDSTTEAEILNALKSLANNRTS---IFIAHRLTT-AMQCDEIIVLENGKVIEQGSH 696
+ LD +L+ L SL+++ + I++ H + +I++L++G+ I+QG+
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 697 DDLLT 701
+D+LT
Sbjct: 248 EDILT 252
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 115/244 (47%), Gaps = 31/244 (12%)
Query: 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDG 520
++H S + ++ IL G+S V G+ AI+G +GSGKST+ L ++ G++ G
Sbjct: 25 DLHVS-VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83
Query: 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVY-----DAARRAAI 574
+D+ ++ P+D + IF +Y + + + +A R
Sbjct: 84 KDLLALS-----------PEDRA--GEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG 130
Query: 575 HDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP 634
+T+ F + ++ E+ +LL + + L R + V SGGEK+R + + + P
Sbjct: 131 QETLDRF--DFQDLMEEK----IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPE 184
Query: 635 ILLCDEATSALDSTTEAEILNALKSLANNRTS-IFIAH--RLTTAMQCDEIIVLENGKVI 691
+ + DE+ S LD + + + SL + + S I + H R+ ++ D + VL G+++
Sbjct: 185 LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV 244
Query: 692 EQGS 695
+ G
Sbjct: 245 KSGD 248
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 110/255 (43%), Gaps = 45/255 (17%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEV 526
+ E L +S V AG+ + +VG +G+GKST+L + + GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSA 68
Query: 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPAKY 585
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 69 TKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL------- 120
Query: 586 STVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP-------ILLC 638
GRS LSGGE QRV LA L+ P +LL
Sbjct: 121 ----------GRS-------------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157
Query: 639 DEATSALDSTTEAEILNALKSLANNRTSIFI-AHRLT-TAMQCDEIIVLENGKVIEQGSH 696
D+ ++LD ++ + L +L+ +I + +H L T +L+ GK++ G
Sbjct: 158 DQPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217
Query: 697 DDLLTKAGRYAQLWG 711
+++LT AQ +G
Sbjct: 218 EEVLTPP-NLAQAYG 231
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/255 (25%), Positives = 109/255 (42%), Gaps = 45/255 (17%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEV 526
+ E L +S V AG+ + +VG +G+GKST+L + + GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMA-GMTSGKGSIQFAGQPLEAWSA 68
Query: 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPAKY 585
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 69 TKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL------- 120
Query: 586 STVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP-------ILLC 638
GRS LSGGE QRV LA L+ P +LL
Sbjct: 121 ----------GRS-------------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157
Query: 639 DEATSALDSTTEAEILNALKSLANNRTSIFI-AHRLT-TAMQCDEIIVLENGKVIEQGSH 696
D+ +LD ++ + L +L+ +I + +H L T +L+ GK++ G
Sbjct: 158 DQPMCSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRR 217
Query: 697 DDLLTKAGRYAQLWG 711
+++LT AQ +G
Sbjct: 218 EEVLTPP-NLAQAYG 231
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 108/257 (42%), Gaps = 49/257 (19%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDI--C 524
+ E L +S V AG+ + +VG +G+GKST LL R SG SI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAW 66
Query: 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPA 583
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 67 SATKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL----- 120
Query: 584 KYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP-------IL 636
GRS LSGGE QRV LA L+ P +L
Sbjct: 121 ------------GRS-------------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLL 155
Query: 637 LCDEATSALDSTTEAEILNALKSLANNRTSIFI-AHRLT-TAMQCDEIIVLENGKVIEQG 694
L DE ++LD ++ + L +L+ +I +H L T +L+ GK + G
Sbjct: 156 LLDEPXNSLDVAQQSALDKILSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASG 215
Query: 695 SHDDLLTKAGRYAQLWG 711
+++LT AQ +G
Sbjct: 216 RREEVLTPP-NLAQAYG 231
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/255 (26%), Positives = 106/255 (41%), Gaps = 45/255 (17%)
Query: 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI--CEV 526
+ E L +S V AG+ + +VG +G+GKST+L + GSI+ GQ +
Sbjct: 10 VAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLAR-XAGXTSGKGSIQFAGQPLEAWSA 68
Query: 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY-DAARRAAIHDTIMNFPAKY 585
T +L ++ + Q T F ++H + + T E+ D A A+ D +
Sbjct: 69 TKLALHRAY-LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL------- 120
Query: 586 STVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP-------ILLC 638
GRS LSGGE QRV LA L+ P +LL
Sbjct: 121 ----------GRS-------------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157
Query: 639 DEATSALDSTTEAEILNALKSLANNRTSIFI-AHRLT-TAMQCDEIIVLENGKVIEQGSH 696
DE ++LD ++ + L +L +I +H L T +L+ GK + G
Sbjct: 158 DEPXNSLDVAQQSALDKILSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRR 217
Query: 697 DDLLTKAGRYAQLWG 711
+++LT AQ +G
Sbjct: 218 EEVLTPP-NLAQAYG 231
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671
+LSGG K ++ALARA L+ ILL DE T+ LD+ A ++N L + TSI I+H
Sbjct: 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG--ITSITISH 603
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674
LSGG+K ++ LA + P +++ DE T+ LD + + ALK I I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 675 -TAMQCDEIIVLENGKVIEQG 694
T +E+ +++G++ G
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N+ F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAH 671
LSGGE QRVA+A L+ I L DE ++ LD + A++ L N +T++ + H
Sbjct: 457 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 516
Query: 672 R-LTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 704
L D +IV E E G H L G
Sbjct: 517 DVLMIDYVSDRLIVFEG----EPGRHGRALPPMG 546
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671
LSGGE QRVA+A A L+ DE +S LD ++ ++ LAN ++ +
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 271
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAH 671
LSGGE QRVA+A L+ I L DE ++ LD + A++ L N +T++ + H
Sbjct: 471 DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
Query: 672 R-LTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 704
L D +IV E E G H L G
Sbjct: 531 DVLMIDYVSDRLIVFEG----EPGRHGRALPPMG 560
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671
LSGGE QRVA+A A L+ DE +S LD ++ ++ LAN ++ +
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVE 285
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671
+LSGG K ++ALARA L+ ILL DE T+ LD+ A ++N L + TSI I+H
Sbjct: 548 ALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG--ITSITISH 603
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674
LSGG+K ++ LA + P +++ DE T+ LD + + ALK I I H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 675 -TAMQCDEIIVLENGKVIEQG 694
T +E+ +++G+ G
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 672 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671
+LSGG K ++ALARA L+ ILL DE T+ LD+ A ++N L + TSI I+H
Sbjct: 542 ALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCG--ITSITISH 597
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674
LSGG+K ++ LA + P +++ DE T+ LD + + ALK I I H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 675 -TAMQCDEIIVLENGKVIEQG 694
T +E+ +++G+ G
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 459 IQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516
++ N F Y T + + ++F +A++G +G+GKST++ +L SG +
Sbjct: 666 VKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAH 671
LSGGE QRVA+A L+ I L DE ++ LD + A++ L N +T++ + H
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 672 R-LTTAMQCDEIIVLENGKVIEQGSHDDLLTKAG 704
L D + V E E G + L G
Sbjct: 461 DVLXIDYVSDRLXVFEG----EPGKYGRALPPXG 490
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 85/212 (40%), Gaps = 35/212 (16%)
Query: 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF--------DTHSGSIRIDGQDICEVTLESLR 532
VV G V IVG +G+GKST +++L D+ G IR + + E L
Sbjct: 43 VVKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL- 101
Query: 533 KSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGER 592
K+ + P + D I A + +V + ++A + K VV
Sbjct: 102 KNGEIRPVVKPQYVDLI--------PKAVKGKVIELLKKA-------DETGKLEEVV--- 143
Query: 593 GLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAE 652
L ++ LER LSGGE QRVA+A A L+ DE +S LD
Sbjct: 144 -----KALELENVLERE--IQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLN 196
Query: 653 ILNALKSLANNRTSIFIA-HRLTTAMQCDEII 683
A++ L+ S+ + H L +II
Sbjct: 197 AARAIRRLSEEGKSVLVVEHDLAVLDYLSDII 228
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 121/313 (38%), Gaps = 82/313 (26%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF-------DTHSGSIR-IDGQDICE 525
L VS +P G VA+ G SGSGKST++ +L+++ G R I G + +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699
Query: 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV-----------YDAARRAAI 574
++ + IG P+ +F +IR S E +V R A
Sbjct: 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEAC 759
Query: 575 H-DTI----MNF------PA------KYSTVVGERGLKGR------------------SL 599
H D I M+F P +Y+ E KG+ S+
Sbjct: 760 HGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI 819
Query: 600 LYIQKKLER------------RPLFVSLSGGEKQRVALARAFLK---APPILLCDEATSA 644
I++KLE +P +LSGGE QRV LA + + + DE T+
Sbjct: 820 PKIKRKLETLYDVGLGYMKLGQPA-TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 878
Query: 645 LDSTTEAEILNALKSLANN-RTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHD 697
L A +L+ L L +N T + I H L D II L G+++ G+ +
Sbjct: 879 LHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 938
Query: 698 DLL----TKAGRY 706
++ + GRY
Sbjct: 939 EVAEVKESHTGRY 951
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 614 SLSGGEKQRVALARAFLK--APPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIA 670
+LSGGE QR+ LA + + DE + L ++ LKS+ + T I +
Sbjct: 504 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 563
Query: 671 HRLTTAMQCDEIIVLENGKVIEQGS 695
H T + D +I + G I G
Sbjct: 564 HDEDTMLAADYLIDIGPGAGIHGGE 588
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/313 (25%), Positives = 121/313 (38%), Gaps = 82/313 (26%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF-------DTHSGSIR-IDGQDICE 525
L VS +P G VA+ G SGSGKST++ +L+++ G R I G + +
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 397
Query: 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV-----------YDAARRAAI 574
++ + IG P+ +F +IR S E +V R A
Sbjct: 398 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEAC 457
Query: 575 H-DTI----MNF------PA------KYSTVVGERGLKGR------------------SL 599
H D I M+F P +Y+ E KG+ S+
Sbjct: 458 HGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI 517
Query: 600 LYIQKKLER------------RPLFVSLSGGEKQRVALARAFLK---APPILLCDEATSA 644
I++KLE +P +LSGGE QRV LA + + + DE T+
Sbjct: 518 PKIKRKLETLYDVGLGYMKLGQPA-TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 576
Query: 645 LDSTTEAEILNALKSLANN-RTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHD 697
L A +L+ L L +N T + I H L D II L G+++ G+ +
Sbjct: 577 LHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 636
Query: 698 DLL----TKAGRY 706
++ + GRY
Sbjct: 637 EVAEVKESHTGRY 649
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 614 SLSGGEKQRVALARAFLK--APPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIA 670
+LSGGE QR+ LA + + DE + L ++ LKS+ + T I +
Sbjct: 202 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261
Query: 671 HRLTTAMQCDEIIVLENGKVIEQGS 695
H T + D +I + G I G
Sbjct: 262 HDEDTMLAADYLIDIGPGAGIHGGE 286
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 77/313 (24%), Positives = 119/313 (38%), Gaps = 82/313 (26%)
Query: 475 LDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSF-------DTHSGSIR-IDGQDICE 525
L VS +P G VA+ G SGSGKST++ +L+++ G R I G + +
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLD 699
Query: 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV-----------YDAARRAAI 574
++ + IG P+ +F +IR S E +V R A
Sbjct: 700 KVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEAC 759
Query: 575 H-DTIMNF----------PA------KYSTVVGERGLKGR------------------SL 599
H D I+ P +Y+ E KG+ S+
Sbjct: 760 HGDGIIKIEXHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDXTVEDALDFFASI 819
Query: 600 LYIQKKLER------------RPLFVSLSGGEKQRVALARAFLK---APPILLCDEATSA 644
I++KLE +P +LSGGE QRV LA + + + DE T+
Sbjct: 820 PKIKRKLETLYDVGLGYXKLGQPA-TTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTG 878
Query: 645 LDSTTEAEILNALKSLANN-RTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHD 697
L A +L+ L L +N T + I H L D II L G+++ G+ +
Sbjct: 879 LHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 938
Query: 698 DLL----TKAGRY 706
++ + GRY
Sbjct: 939 EVAEVKESHTGRY 951
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 41/221 (18%)
Query: 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
G ++ ++ Y ++ +L+ ++ + G V G +G GK+T+L+ + G
Sbjct: 8 GSKLEIRDLSVGY--DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65
Query: 516 IRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575
I +G I +V + I +P++ ++ R+ ++
Sbjct: 66 IIYNGVPITKV-----KGKIFFLPEEIIV------------------------PRKISVE 96
Query: 576 DTIMNFPAKYSTVVGER----GLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLK 631
D + + Y V + L+ +L ++KKL LS G +RV LA L
Sbjct: 97 DYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGE------LSQGTIRRVQLASTLLV 150
Query: 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHR 672
I + D+ A+D ++ ++L ++ + + + I+ R
Sbjct: 151 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 94/227 (41%), Gaps = 51/227 (22%)
Query: 488 VAIVGTSGSGKSTILRLLFRSFDTHSGSIRID-GQDICEVTLESLRKSIGVVPQDTVLFN 546
+ ++G +G+GK+T+++LL +G+++ D GQDI ++ + K + P+
Sbjct: 381 LVMMGENGTGKTTLIKLL-------AGALKPDEGQDIPKLNVSM--KPQKIAPKFPGTVR 431
Query: 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606
F IR L+ + D + I D I +++
Sbjct: 432 QLFFKKIRGQFLNPQFQT--DVVKPLRIDDII------------------------DQEV 465
Query: 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS--LANNR 664
+ LSGGE QRVA+ A I L DE ++ LDS ++ L N +
Sbjct: 466 QH------LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK 519
Query: 665 TSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSH----DDLLTKAGRY 706
T+ + H A D++IV E + + +H + LLT R+
Sbjct: 520 TAFIVEHDFIMATYLADKVIVFEG--IPSKNAHARAPESLLTGCNRF 564
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 615 LSGGEKQRVALARAF--LKAPPILLC--DEATSALDSTTEAEILNALKSLANNRTSIFIA 670
LSGGE+ A+A F LK P+ C DE +ALD LK +++ I I
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 671 HRLTTAMQCD 680
HR T + D
Sbjct: 389 HRKGTMEEAD 398
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 614 SLSGGEKQRVALARAFLK---APPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFI 669
+LSGGE QRV LA K + + DE T+ L ++LN + L + T I I
Sbjct: 863 TLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVI 922
Query: 670 AHRLTTAMQCDEIIVLENGK------VIEQGSHDDLLTKAGRY 706
H L D II L V+ QG+ +D+ Y
Sbjct: 923 EHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASY 965
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 13/98 (13%)
Query: 614 SLSGGEKQRVALARAFLKA--PPILLCDEATSAL---DSTTEAEILNALKSLANNRTSIF 668
+LSGGE QR+ LA + + DE + L D+ E L L+ L N T I
Sbjct: 521 TLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGN--TLIV 578
Query: 669 IAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLL 700
+ H T D I+ + G+++ G +D+LL
Sbjct: 579 VEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELL 616
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRL 673
LSGG QR+ +A + L+ + + D+ +S LD + A++ L N+ I + H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 614 SLSGGEKQRVALARAFLK---APPILLCDEATSAL---DSTTEAEILNALKSLANNRTSI 667
+LSGGE QR+ LA K + + DE T L D E+L+ L N T I
Sbjct: 805 TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGN--TVI 862
Query: 668 FIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKAGRYA 707
I H L D II L E G ++ G+ +++ Y
Sbjct: 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYT 908
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 614 SLSGGEKQRVALARAFLKA--PPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIA 670
+LSGGE QR+ LA I + DE T L ++ LK L + T I +
Sbjct: 464 TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523
Query: 671 HRLTTAMQCDEIIVL------ENGKVIEQGSHDDLL 700
H D II + G+V+ QG+ D+LL
Sbjct: 524 HDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELL 559
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 33.5 bits (75), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 38/97 (39%), Gaps = 16/97 (16%)
Query: 615 LSGGEKQRVALARAF----LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIA 670
LSGGEK V LA F +K P + DE S LD LK + + I I
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
Query: 671 HR------------LTTAMQCDEIIVLENGKVIEQGS 695
H +T I+ +E K++E GS
Sbjct: 280 HNKIVMEAADLLHGVTMVNGVSAIVPVEVEKILEVGS 316
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 5/71 (7%)
Query: 459 IQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515
IQ NV + ER L+ ++ V G+ V I+G +GSGK+T+LR + +SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAI-SGLLPYSGN 59
Query: 516 IRIDGQDICEV 526
I I+G ++ ++
Sbjct: 60 IFINGMEVRKI 70
>pdb|1XEW|Y Chain Y, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 614 SLSGGEKQRVALARAF----LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFI 669
++SGGEK ALA F K P L DE + LD + + +K + I I
Sbjct: 63 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVI 122
Query: 670 AHRLTTAMQCDEII 683
R D+II
Sbjct: 123 TLRDVMMANADKII 136
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 45/100 (45%), Gaps = 10/100 (10%)
Query: 615 LSGGEKQRVALA---RAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIA 670
LSGGE QR+ LA R + + + DE T+ L + L L + T I +
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVE 790
Query: 671 HRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKAG 704
H++ D ++ + + G+++ QG+ ++ AG
Sbjct: 791 HKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAG 830
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 23/105 (21%)
Query: 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTH------------------ 512
R LD + P G ++ G SGSGKST++ + L + H
Sbjct: 510 RNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADH 569
Query: 513 -SGSIRIDGQDICEVT--LESLRKSIGVVPQDTVLFNDTIFHNIR 554
+GS R+ G D+ ++T + +K IG P+ + +F +R
Sbjct: 570 TAGSARLGG-DLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVR 613
>pdb|3FHJ|D Chain D, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 287
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 11/81 (13%)
Query: 187 IARTTASAFNELRTAVFSKVALRTIRSVSRK----------VFSHLHELDLRYHLSRETG 236
I + SA + L ++S ++ ++I + R+ V L + RYH E+
Sbjct: 196 IEKKIKSAISNLLN-IYSTLSGQSIEELERQYVFKADLAQVVIETLRPIQERYHHWMESE 254
Query: 237 ALNRIIDRGSRAINFILSSMV 257
L+R++D G+ N + S MV
Sbjct: 255 ELDRVLDEGAEKANRVASEMV 275
>pdb|1XEX|B Chain B, Structural Biochemistry Of Atp-Driven Dimerization And Dna
Stimulated Activation Of Smc Atpases
Length = 172
Score = 31.6 bits (70), Expect = 1.8, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 614 SLSGGEKQRVALARAF----LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFI 669
++SGGEK ALA F K P L D+ + LD + + +K + I I
Sbjct: 63 AMSGGEKALTALAFVFAIQKFKPAPFYLFDQIDAHLDDANVKRVADLIKESSKESQFIVI 122
Query: 670 AHRLTTAMQCDEII 683
R D+II
Sbjct: 123 TLRDVMMANADKII 136
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 614 SLSGGEKQRVALARAFLKAP------PILLCDEATSALDSTTEAEILNALKSLAN-NRTS 666
LSGGE+ ++++ A A DE S+LD+ + +I + LK L N+
Sbjct: 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVI 338
Query: 667 IFIAHRLTTAMQCDEIIVLENGKVIEQ 693
+FI H + D + + G V+ +
Sbjct: 339 VFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|1D2R|A Chain A, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|B Chain B, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|C Chain C, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|D Chain D, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|E Chain E, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site.
pdb|1D2R|F Chain F, 2.9 A Crystal Structure Of Ligand-Free Tryptophanyl-Trna
Synthetase: Domain Movements Fragment The Adenine
Nucleotide Binding Site
Length = 326
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 272 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 315
>pdb|1I6M|A Chain A, 1.7 High Resolution Experimental Phases For
Tryptophanyl-Trna Synthetase Complexed With
Tryptophanyl-5'amp
pdb|1M83|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In A Closed, Pre-Transition State
Conformation
pdb|1MAU|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp And Tryptophanamide In A
Pre-Transition State Conformation
pdb|1MAW|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MAW|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Atp In An Open Conformation
pdb|1MB2|A Chain A, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|B Chain B, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|C Chain C, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|D Chain D, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|E Chain E, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|1MB2|F Chain F, Crystal Structure Of Tryptophanyl-Trna Synthetase
Complexed With Tryptophan In An Open Conformation
pdb|2OV4|A Chain A, Crystal Structure Of B. Stearothermophilus Tryptophanyl
Trna Synthetase In Complex With Adenosine Tetraphosphate
Length = 328
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 272 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 315
>pdb|3FHJ|A Chain A, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 300
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 245 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 288
>pdb|3FHJ|E Chain E, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 293
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 238 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 281
>pdb|3FHJ|C Chain C, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 280
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 225 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 268
>pdb|3FHJ|B Chain B, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 292
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 237 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 280
>pdb|3FHJ|F Chain F, Independent Saturation Of Three Trprs Subsites Generates A
Partially-Assembled State Similar To Those Observed In
Molecular Simulations
Length = 297
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 214 VSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMV 257
+++ V L + RYH E+ L+R++D G+ N + S MV
Sbjct: 242 LAQVVIETLRPIQERYHHWMESEELDRVLDEGAEKANRVASEMV 285
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRAGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAK---TGVVEVTME 110
>pdb|4H8Q|A Chain A, Structure Of The Q29t Isdx2-neat5 Mutant In Complex With
Heme
Length = 129
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 293 YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF 340
Y+ TL ++W TKF+ N DA + D N V++ N+ F
Sbjct: 51 YIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLF 98
>pdb|4H8P|A Chain A, Neat5 Domain Of Isdx2, A B. Anthracis Hemophore In Complex
With Heme
Length = 129
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 293 YVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAF 340
Y+ TL ++W TKF+ N DA + D N V++ N+ F
Sbjct: 51 YIAMTLKNSEWITKFQTEKNGGFADAKVVSEDKAANTRVVEFEANDLF 98
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 614 SLSGGEKQRVALARAFLKAP------PILLCDEATSALDSTTEAEILNALKSLAN-NRTS 666
LSGGE+ ++++ A A DE S+LD+ + +I + LK L N+
Sbjct: 279 GLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVI 338
Query: 667 IFIAHRLTTAMQCDEIIVLENGKVIEQ 693
+FI H + D + + G V+ +
Sbjct: 339 VFITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAK---TGVVEVTME 110
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAK---TGVVEVTME 110
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 448 NAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507
N + L ++ G+IQ LT I D + + + +VA+ G +GSGKS+ + L
Sbjct: 40 NLIELRMRKGNIQ--------LTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRG 91
Query: 508 SFDTHSGSIRIDGQDICEVTLE 529
+ G+ + + EVT+E
Sbjct: 92 IGNEEEGAAK---TGVVEVTME 110
>pdb|2RC5|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC5|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans
pdb|2RC6|A Chain A, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|B Chain B, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|C Chain C, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
pdb|2RC6|D Chain D, Refined Structure Of Fnr From Leptospira Interrogans Bound
To Nadp+
Length = 314
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSG 497
I RDN N G+IQF V +Y+ + K D V+ P+GK + T SG
Sbjct: 115 IIKRDNIYDEN---GNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLLPNTDFSG 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,741,873
Number of Sequences: 62578
Number of extensions: 663282
Number of successful extensions: 4267
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3970
Number of HSP's gapped (non-prelim): 209
length of query: 728
length of database: 14,973,337
effective HSP length: 106
effective length of query: 622
effective length of database: 8,340,069
effective search space: 5187522918
effective search space used: 5187522918
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)