Query 004826
Match_columns 728
No_of_seqs 368 out of 2729
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 13:34:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004826.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004826hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058 Peptide exporter, ABC 100.0 2E-120 4E-125 1014.7 66.6 572 106-716 133-707 (716)
2 COG2274 SunT ABC-type bacterio 100.0 1E-111 3E-116 979.1 72.9 608 56-714 92-709 (709)
3 KOG0057 Mitochondrial Fe/S clu 100.0 2E-111 4E-116 913.2 61.7 580 105-716 10-589 (591)
4 KOG0056 Heavy metal exporter H 100.0 3E-113 6E-118 906.1 33.8 578 108-715 198-776 (790)
5 KOG0055 Multidrug/pheromone ex 100.0 3E-106 7E-111 945.4 70.2 573 106-714 650-1226(1228)
6 COG5265 ATM1 ABC-type transpor 100.0 3E-105 6E-110 839.5 40.5 494 199-711 2-496 (497)
7 TIGR01193 bacteriocin_ABC ABC- 100.0 1E-101 2E-106 918.3 76.2 604 56-711 92-707 (708)
8 COG1132 MdlB ABC-type multidru 100.0 4E-101 9E-106 892.2 75.4 563 108-715 4-566 (567)
9 PRK11174 cysteine/glutathione 100.0 5E-101 1E-105 895.4 76.3 570 107-716 9-587 (588)
10 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4E-101 9E-106 914.1 75.1 602 56-710 92-709 (710)
11 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7E-100 2E-104 899.9 78.5 597 56-713 78-685 (686)
12 TIGR03375 type_I_sec_LssB type 100.0 4.3E-99 9E-104 894.4 76.3 598 56-702 79-689 (694)
13 TIGR01846 type_I_sec_HlyB type 100.0 4.8E-97 1E-101 876.5 77.4 605 56-714 78-693 (694)
14 TIGR00958 3a01208 Conjugate Tr 100.0 1.1E-96 2E-101 873.7 75.3 563 106-710 147-711 (711)
15 PTZ00265 multidrug resistance 100.0 1.7E-96 4E-101 918.4 76.5 565 108-713 813-1465(1466)
16 PRK11160 cysteine/glutathione 100.0 2.6E-95 6E-100 843.5 76.1 567 108-712 4-573 (574)
17 KOG0055 Multidrug/pheromone ex 100.0 5.5E-98 1E-102 875.9 54.0 503 194-716 86-591 (1228)
18 PRK11176 lipid transporter ATP 100.0 1.1E-94 2.3E-99 841.6 76.6 569 105-714 10-580 (582)
19 PRK10790 putative multidrug tr 100.0 4.5E-94 9.7E-99 837.6 77.9 570 105-716 8-578 (592)
20 COG4988 CydD ABC-type transpor 100.0 7.7E-93 1.7E-97 780.3 70.2 503 192-715 53-557 (559)
21 PRK13657 cyclic beta-1,2-gluca 100.0 7.2E-92 1.6E-96 818.2 78.5 567 106-714 5-571 (588)
22 TIGR01192 chvA glucan exporter 100.0 2.6E-91 5.7E-96 811.2 78.1 566 107-714 6-571 (585)
23 TIGR02203 MsbA_lipidA lipid A 100.0 3.3E-91 7.2E-96 810.7 75.7 557 122-714 11-569 (571)
24 TIGR02868 CydC thiol reductant 100.0 1.1E-91 2.3E-96 807.5 70.3 524 110-673 3-529 (529)
25 PRK10789 putative multidrug tr 100.0 1.6E-90 3.4E-95 803.1 72.2 547 135-715 5-552 (569)
26 TIGR02204 MsbA_rel ABC transpo 100.0 1.5E-89 3.3E-94 797.6 76.2 568 107-713 5-575 (576)
27 TIGR00957 MRP_assoc_pro multi 100.0 3.7E-90 8E-95 869.6 74.1 495 194-712 1020-1519(1522)
28 PLN03130 ABC transporter C fam 100.0 2.6E-89 5.7E-94 861.1 75.3 506 193-724 967-1486(1622)
29 COG4987 CydC ABC-type transpor 100.0 9.3E-89 2E-93 735.9 64.3 554 124-711 15-571 (573)
30 TIGR02857 CydD thiol reductant 100.0 1.4E-87 3E-92 773.3 70.8 526 125-685 3-529 (529)
31 PLN03232 ABC transporter C fam 100.0 8.5E-88 1.8E-92 847.1 73.6 498 193-715 964-1473(1495)
32 PTZ00243 ABC transporter; Prov 100.0 1.8E-87 3.9E-92 843.4 75.9 495 199-715 1018-1548(1560)
33 TIGR01842 type_I_sec_PrtD type 100.0 4.2E-86 9.2E-91 762.8 72.6 537 123-702 4-543 (544)
34 PTZ00265 multidrug resistance 100.0 3.6E-86 7.9E-91 825.6 73.4 565 108-714 47-729 (1466)
35 KOG0054 Multidrug resistance-a 100.0 8.1E-85 1.8E-89 781.9 59.5 499 191-711 870-1373(1381)
36 TIGR01271 CFTR_protein cystic 100.0 1E-82 2.3E-87 799.9 74.2 496 194-714 940-1453(1490)
37 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.2E-80 2.6E-85 718.2 67.3 531 108-693 5-551 (555)
38 PLN03232 ABC transporter C fam 100.0 1.7E-79 3.6E-84 772.1 74.0 536 124-714 300-841 (1495)
39 PLN03130 ABC transporter C fam 100.0 3.1E-78 6.8E-83 760.8 74.4 537 124-713 300-840 (1622)
40 COG4618 ArpD ABC-type protease 100.0 3.4E-79 7.3E-84 655.6 52.2 537 124-702 22-561 (580)
41 PRK10522 multidrug transporter 100.0 1.2E-74 2.6E-79 667.8 68.0 523 122-701 10-539 (547)
42 TIGR00957 MRP_assoc_pro multi 100.0 2.8E-71 6E-76 698.6 74.3 550 106-713 306-862 (1522)
43 KOG0054 Multidrug resistance-a 100.0 2.3E-71 5.1E-76 665.9 65.0 537 124-712 200-742 (1381)
44 TIGR00954 3a01203 Peroxysomal 100.0 7.8E-71 1.7E-75 645.9 67.2 537 105-687 76-653 (659)
45 TIGR01271 CFTR_protein cystic 100.0 4.4E-67 9.5E-72 658.7 73.2 533 124-711 79-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 7.2E-65 1.6E-69 639.1 72.5 549 105-712 232-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 2.4E-57 5.1E-62 477.8 28.0 236 457-713 1-237 (275)
48 PRK14257 phosphate ABC transpo 100.0 1.9E-53 4.1E-58 459.2 27.9 224 454-703 76-315 (329)
49 cd03252 ABCC_Hemolysin The ABC 100.0 9.8E-52 2.1E-56 427.5 28.4 235 459-712 1-236 (237)
50 COG1126 GlnQ ABC-type polar am 100.0 8.9E-52 1.9E-56 403.7 22.5 215 458-703 2-227 (240)
51 cd03288 ABCC_SUR2 The SUR doma 100.0 1E-50 2.2E-55 425.1 28.8 239 455-713 16-256 (257)
52 cd03253 ABCC_ATM1_transporter 100.0 1.6E-50 3.5E-55 418.1 28.4 235 459-712 1-235 (236)
53 COG1135 AbcC ABC-type metal io 100.0 6E-51 1.3E-55 416.7 21.5 223 459-711 2-243 (339)
54 cd03254 ABCC_Glucan_exporter_l 100.0 4.6E-50 1E-54 412.8 27.3 228 457-703 1-228 (229)
55 cd03251 ABCC_MsbA MsbA is an e 100.0 9.2E-50 2E-54 411.9 27.2 232 459-709 1-233 (234)
56 COG1117 PstB ABC-type phosphat 100.0 1.8E-50 3.9E-55 392.5 18.8 218 458-702 7-238 (253)
57 COG1125 OpuBA ABC-type proline 100.0 2.4E-50 5.2E-55 400.7 19.8 214 459-703 2-227 (309)
58 cd03244 ABCC_MRP_domain2 Domai 100.0 2.2E-49 4.8E-54 405.5 26.3 219 457-695 1-220 (221)
59 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.3E-49 7.2E-54 408.8 27.1 235 459-712 1-237 (238)
60 PRK13631 cbiO cobalt transport 100.0 6.4E-49 1.4E-53 422.7 27.4 218 458-701 21-265 (320)
61 TIGR02314 ABC_MetN D-methionin 100.0 1.3E-48 2.7E-53 422.7 26.1 224 459-712 2-243 (343)
62 cd03245 ABCC_bacteriocin_expor 100.0 2.8E-48 6E-53 397.1 26.3 219 457-694 1-220 (220)
63 cd03261 ABC_Org_Solvent_Resist 100.0 2.7E-48 5.9E-53 401.3 24.9 218 459-707 1-232 (235)
64 COG1120 FepC ABC-type cobalami 100.0 4.9E-48 1.1E-52 395.6 22.1 215 458-703 2-230 (258)
65 cd03260 ABC_PstB_phosphate_tra 100.0 7.9E-48 1.7E-52 395.7 22.9 212 459-699 1-227 (227)
66 COG1122 CbiO ABC-type cobalt t 100.0 1.2E-47 2.6E-52 392.4 23.1 216 458-703 3-230 (235)
67 COG4178 ABC-type uncharacteriz 100.0 1.2E-43 2.7E-48 397.4 57.1 454 197-686 104-587 (604)
68 cd03248 ABCC_TAP TAP, the Tran 100.0 3.4E-47 7.3E-52 390.8 24.8 216 456-690 9-226 (226)
69 PRK13650 cbiO cobalt transport 100.0 3.5E-47 7.6E-52 402.8 25.6 216 458-703 4-231 (279)
70 PRK14269 phosphate ABC transpo 100.0 3.7E-47 8E-52 395.6 25.3 218 458-702 2-231 (246)
71 COG3839 MalK ABC-type sugar tr 100.0 2.4E-47 5.2E-52 404.7 23.9 212 458-702 3-224 (338)
72 COG1124 DppF ABC-type dipeptid 100.0 2.2E-47 4.7E-52 380.3 22.0 221 458-707 3-238 (252)
73 PRK13647 cbiO cobalt transport 100.0 5.6E-47 1.2E-51 400.2 26.0 213 458-700 4-226 (274)
74 cd03256 ABC_PhnC_transporter A 100.0 6.1E-47 1.3E-51 392.5 24.5 212 459-700 1-233 (241)
75 cd03219 ABC_Mj1267_LivG_branch 100.0 5.5E-47 1.2E-51 391.7 23.8 222 459-702 1-233 (236)
76 PRK11650 ugpC glycerol-3-phosp 100.0 1.2E-46 2.6E-51 410.3 27.0 214 458-703 3-226 (356)
77 COG3840 ThiQ ABC-type thiamine 100.0 4.5E-47 9.7E-52 359.8 20.3 211 459-704 2-222 (231)
78 cd03369 ABCC_NFT1 Domain 2 of 100.0 1.3E-46 2.9E-51 381.2 25.4 203 456-696 4-207 (207)
79 PRK14273 phosphate ABC transpo 100.0 1.1E-46 2.3E-51 394.0 25.1 218 458-702 7-239 (254)
80 cd03263 ABC_subfamily_A The AB 100.0 8.5E-47 1.8E-51 386.1 23.6 210 459-699 1-219 (220)
81 PRK11153 metN DL-methionine tr 100.0 1.2E-46 2.5E-51 409.4 26.0 223 459-711 2-242 (343)
82 PRK14250 phosphate ABC transpo 100.0 2.6E-46 5.7E-51 388.0 27.3 222 458-710 3-231 (241)
83 cd03224 ABC_TM1139_LivF_branch 100.0 1.3E-46 2.8E-51 385.2 24.3 217 459-701 1-221 (222)
84 cd03291 ABCC_CFTR1 The CFTR su 100.0 6.1E-46 1.3E-50 392.5 30.1 241 431-710 15-256 (282)
85 PRK13635 cbiO cobalt transport 100.0 1.4E-46 3.1E-51 398.0 25.2 217 458-704 5-232 (279)
86 COG1136 SalX ABC-type antimicr 100.0 2.2E-46 4.7E-51 376.4 25.1 204 459-692 2-222 (226)
87 TIGR02315 ABC_phnC phosphonate 100.0 1.2E-46 2.7E-51 390.8 24.1 212 459-700 2-234 (243)
88 TIGR00960 3a0501s02 Type II (G 100.0 6.9E-47 1.5E-51 385.8 21.8 202 459-690 2-216 (216)
89 PRK14242 phosphate transporter 100.0 1.5E-46 3.2E-51 392.6 24.8 218 458-702 6-238 (253)
90 cd03296 ABC_CysA_sulfate_impor 100.0 1.6E-46 3.5E-51 389.1 24.4 212 458-702 2-227 (239)
91 PRK13636 cbiO cobalt transport 100.0 2.4E-46 5.3E-51 397.2 26.0 217 458-704 5-234 (283)
92 PRK10744 pstB phosphate transp 100.0 3.7E-46 8E-51 391.2 26.9 220 456-702 11-245 (260)
93 TIGR00972 3a0107s01c2 phosphat 100.0 1.9E-46 4E-51 390.5 24.4 217 459-702 2-233 (247)
94 cd03258 ABC_MetN_methionine_tr 100.0 2.3E-46 4.9E-51 386.4 24.7 213 459-701 2-230 (233)
95 PRK13643 cbiO cobalt transport 100.0 2.7E-46 5.8E-51 397.7 25.8 214 459-702 2-234 (288)
96 PRK13637 cbiO cobalt transport 100.0 2.5E-46 5.5E-51 397.7 24.8 216 459-702 3-235 (287)
97 PRK13652 cbiO cobalt transport 100.0 3.9E-46 8.6E-51 394.5 26.0 217 458-704 3-230 (277)
98 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 3.1E-46 6.8E-51 380.4 23.7 210 458-702 4-228 (254)
99 cd03259 ABC_Carb_Solutes_like 100.0 1.6E-46 3.4E-51 382.3 21.6 203 459-694 1-213 (213)
100 PRK13646 cbiO cobalt transport 100.0 3.3E-46 7.2E-51 396.7 24.8 220 458-703 2-237 (286)
101 PRK14267 phosphate ABC transpo 100.0 4.4E-46 9.6E-51 389.1 25.1 218 458-702 4-238 (253)
102 PRK11432 fbpC ferric transport 100.0 3.5E-46 7.6E-51 405.5 25.2 212 458-702 6-227 (351)
103 COG1127 Ttg2A ABC-type transpo 100.0 5.5E-46 1.2E-50 368.4 24.0 223 458-711 8-246 (263)
104 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9E-46 2E-50 382.8 26.8 216 459-702 2-222 (236)
105 PRK14235 phosphate transporter 100.0 5.7E-46 1.2E-50 391.2 25.6 220 456-702 17-252 (267)
106 TIGR01186 proV glycine betaine 100.0 2.6E-46 5.6E-51 406.9 23.7 203 470-702 4-220 (363)
107 cd03250 ABCC_MRP_domain1 Domai 100.0 4.2E-46 9E-51 376.8 23.5 198 459-689 1-204 (204)
108 PRK13642 cbiO cobalt transport 100.0 7.6E-46 1.6E-50 392.3 26.4 217 458-704 4-232 (277)
109 cd03295 ABC_OpuCA_Osmoprotecti 100.0 4.3E-46 9.3E-51 386.6 23.6 216 459-702 1-226 (242)
110 PRK14247 phosphate ABC transpo 100.0 6.2E-46 1.3E-50 387.3 24.9 218 458-702 3-235 (250)
111 cd03226 ABC_cobalt_CbiO_domain 100.0 2.5E-46 5.5E-51 378.6 21.1 199 460-691 1-205 (205)
112 PRK13634 cbiO cobalt transport 100.0 6E-46 1.3E-50 395.4 24.8 217 458-703 2-237 (290)
113 TIGR03265 PhnT2 putative 2-ami 100.0 6.5E-46 1.4E-50 404.1 25.4 213 458-703 4-226 (353)
114 PRK10575 iron-hydroxamate tran 100.0 4.8E-46 1E-50 391.4 23.6 222 458-711 11-246 (265)
115 PRK13633 cobalt transporter AT 100.0 6.6E-46 1.4E-50 393.4 24.7 217 458-704 4-236 (280)
116 PRK13632 cbiO cobalt transport 100.0 7.9E-46 1.7E-50 391.0 25.1 216 458-703 7-233 (271)
117 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3.9E-46 8.5E-51 380.7 22.1 202 459-690 1-218 (218)
118 COG1116 TauB ABC-type nitrate/ 100.0 4.3E-46 9.3E-51 374.4 21.8 198 458-691 3-212 (248)
119 TIGR03005 ectoine_ehuA ectoine 100.0 8.2E-46 1.8E-50 386.8 24.6 213 459-702 1-237 (252)
120 cd03294 ABC_Pro_Gly_Bertaine T 100.0 5.5E-46 1.2E-50 391.7 23.4 218 460-708 26-258 (269)
121 cd03264 ABC_drug_resistance_li 100.0 7.4E-46 1.6E-50 376.8 23.4 203 459-694 1-211 (211)
122 PRK14251 phosphate ABC transpo 100.0 9.9E-46 2.1E-50 386.0 24.7 219 458-703 4-237 (251)
123 PRK11629 lolD lipoprotein tran 100.0 8.7E-46 1.9E-50 382.2 24.0 208 458-695 5-228 (233)
124 COG4615 PvdE ABC-type sideroph 100.0 7.3E-43 1.6E-47 364.2 45.9 458 199-694 68-530 (546)
125 PRK13644 cbiO cobalt transport 100.0 1.1E-45 2.4E-50 390.3 25.3 214 459-702 2-225 (274)
126 PRK14236 phosphate transporter 100.0 1.5E-45 3.3E-50 389.1 26.2 220 456-702 23-257 (272)
127 COG2884 FtsE Predicted ATPase 100.0 2.3E-46 5.1E-51 357.7 17.7 208 459-696 2-221 (223)
128 PRK11231 fecE iron-dicitrate t 100.0 1.4E-45 3.1E-50 385.7 25.4 223 459-713 3-238 (255)
129 PRK09536 btuD corrinoid ABC tr 100.0 1.3E-45 2.9E-50 406.1 26.3 222 458-711 3-237 (402)
130 PRK14239 phosphate transporter 100.0 1.4E-45 3E-50 385.0 25.1 218 458-702 5-237 (252)
131 PRK10851 sulfate/thiosulfate t 100.0 1.2E-45 2.7E-50 401.8 25.7 212 458-702 2-227 (353)
132 cd03268 ABC_BcrA_bacitracin_re 100.0 1.1E-45 2.3E-50 374.8 23.5 203 459-694 1-208 (208)
133 COG3638 ABC-type phosphate/pho 100.0 6.7E-46 1.4E-50 366.8 21.1 214 458-701 3-237 (258)
134 PRK14240 phosphate transporter 100.0 1.4E-45 3.1E-50 384.5 24.8 219 457-702 2-235 (250)
135 PRK14245 phosphate ABC transpo 100.0 1.3E-45 2.9E-50 384.8 24.6 218 458-702 3-235 (250)
136 PRK14248 phosphate ABC transpo 100.0 1.6E-45 3.6E-50 388.0 25.4 218 458-702 21-253 (268)
137 PRK14268 phosphate ABC transpo 100.0 1.3E-45 2.7E-50 386.8 24.4 218 458-702 12-243 (258)
138 cd03266 ABC_NatA_sodium_export 100.0 1.3E-45 2.7E-50 376.9 23.6 205 459-694 2-218 (218)
139 PRK14244 phosphate ABC transpo 100.0 8.3E-46 1.8E-50 386.6 22.7 218 458-702 5-238 (251)
140 PRK14237 phosphate transporter 100.0 2.2E-45 4.8E-50 386.8 26.0 219 457-702 19-252 (267)
141 PRK13640 cbiO cobalt transport 100.0 2.1E-45 4.5E-50 389.9 26.0 215 458-702 5-233 (282)
142 TIGR02673 FtsE cell division A 100.0 8.9E-46 1.9E-50 377.0 22.1 201 459-689 2-214 (214)
143 PRK14274 phosphate ABC transpo 100.0 2.4E-45 5.3E-50 384.8 26.0 218 458-702 12-244 (259)
144 TIGR02769 nickel_nikE nickel i 100.0 2.2E-45 4.9E-50 386.3 25.7 223 459-710 3-250 (265)
145 PRK11614 livF leucine/isoleuci 100.0 2.4E-45 5.2E-50 379.8 25.5 219 458-702 5-227 (237)
146 cd03218 ABC_YhbG The ABC trans 100.0 1.4E-45 3E-50 380.3 23.6 216 459-701 1-222 (232)
147 TIGR02211 LolD_lipo_ex lipopro 100.0 1.4E-45 2.9E-50 377.5 23.3 203 459-691 2-220 (221)
148 cd03290 ABCC_SUR1_N The SUR do 100.0 1.9E-45 4.2E-50 375.7 24.3 210 460-689 2-218 (218)
149 PRK11124 artP arginine transpo 100.0 2.1E-45 4.5E-50 381.5 24.8 214 458-702 2-231 (242)
150 cd03292 ABC_FtsE_transporter F 100.0 1.2E-45 2.7E-50 375.9 22.5 202 459-690 1-214 (214)
151 cd03265 ABC_DrrA DrrA is the A 100.0 2.3E-45 4.9E-50 375.7 24.4 209 459-699 1-219 (220)
152 PRK13648 cbiO cobalt transport 100.0 2.4E-45 5.2E-50 386.9 25.2 217 458-704 7-234 (269)
153 cd03301 ABC_MalK_N The N-termi 100.0 1.4E-45 2.9E-50 375.4 22.5 203 459-694 1-213 (213)
154 PRK09493 glnQ glutamine ABC tr 100.0 2.6E-45 5.7E-50 380.2 24.9 213 459-702 2-226 (240)
155 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.1E-45 2.4E-50 378.0 21.8 203 459-696 1-218 (220)
156 TIGR03410 urea_trans_UrtE urea 100.0 1.3E-45 2.8E-50 380.1 22.2 212 459-700 1-220 (230)
157 PRK13651 cobalt transporter AT 100.0 2.6E-45 5.7E-50 392.4 25.3 215 458-702 2-255 (305)
158 PRK10619 histidine/lysine/argi 100.0 4.3E-45 9.3E-50 382.5 26.3 216 457-702 4-242 (257)
159 COG3842 PotA ABC-type spermidi 100.0 6.1E-46 1.3E-50 395.9 20.2 213 458-703 5-228 (352)
160 PRK14271 phosphate ABC transpo 100.0 6.4E-45 1.4E-49 384.8 27.8 218 458-702 21-252 (276)
161 PRK09452 potA putrescine/sperm 100.0 3.6E-45 7.7E-50 400.4 26.7 213 458-703 14-236 (375)
162 TIGR03411 urea_trans_UrtD urea 100.0 3E-45 6.6E-50 380.2 24.7 212 459-701 3-231 (242)
163 PRK11000 maltose/maltodextrin 100.0 3.2E-45 7E-50 401.4 26.1 212 458-702 3-224 (369)
164 TIGR03258 PhnT 2-aminoethylpho 100.0 2.8E-45 6E-50 399.8 25.4 213 457-702 4-229 (362)
165 PRK11831 putative ABC transpor 100.0 4.4E-45 9.5E-50 384.9 26.0 223 458-711 7-244 (269)
166 PRK15079 oligopeptide ABC tran 100.0 3.2E-45 6.9E-50 395.6 25.4 224 458-711 8-263 (331)
167 PRK11264 putative amino-acid A 100.0 9E-45 2E-49 378.5 27.7 217 459-702 4-234 (250)
168 PRK14249 phosphate ABC transpo 100.0 5.4E-45 1.2E-49 380.4 26.0 218 458-702 4-236 (251)
169 PRK14256 phosphate ABC transpo 100.0 4.9E-45 1.1E-49 381.0 25.6 219 457-702 3-237 (252)
170 PRK14259 phosphate ABC transpo 100.0 7.4E-45 1.6E-49 383.1 27.1 219 457-702 12-254 (269)
171 PRK14262 phosphate ABC transpo 100.0 4.5E-45 9.9E-50 380.7 25.2 218 458-702 3-235 (250)
172 PRK14261 phosphate ABC transpo 100.0 6.9E-45 1.5E-49 380.1 26.0 218 458-702 6-238 (253)
173 cd03225 ABC_cobalt_CbiO_domain 100.0 2E-45 4.4E-50 373.5 21.3 200 460-689 1-211 (211)
174 PRK13638 cbiO cobalt transport 100.0 4.4E-45 9.5E-50 385.4 24.4 214 459-703 2-227 (271)
175 PRK13639 cbiO cobalt transport 100.0 5.4E-45 1.2E-49 385.4 25.1 214 459-702 2-227 (275)
176 PRK14238 phosphate transporter 100.0 5.9E-45 1.3E-49 384.3 25.2 218 458-702 24-256 (271)
177 PRK14253 phosphate ABC transpo 100.0 5.8E-45 1.2E-49 379.8 24.8 218 458-702 3-234 (249)
178 cd03247 ABCC_cytochrome_bd The 100.0 3.1E-45 6.7E-50 362.6 21.5 177 459-694 1-178 (178)
179 PRK10908 cell division protein 100.0 5.7E-45 1.2E-49 373.3 24.2 203 459-691 2-216 (222)
180 PRK13649 cbiO cobalt transport 100.0 9.2E-45 2E-49 384.7 26.3 216 458-702 2-235 (280)
181 PRK13645 cbiO cobalt transport 100.0 7.2E-45 1.6E-49 387.2 25.5 221 457-702 5-241 (289)
182 cd03300 ABC_PotA_N PotA is an 100.0 3.8E-45 8.3E-50 377.2 22.6 211 459-702 1-221 (232)
183 PRK14272 phosphate ABC transpo 100.0 7.1E-45 1.5E-49 379.7 24.7 218 458-702 4-237 (252)
184 cd03257 ABC_NikE_OppD_transpor 100.0 9.9E-45 2.1E-49 372.7 25.4 210 459-694 2-228 (228)
185 PRK14270 phosphate ABC transpo 100.0 1.1E-44 2.4E-49 378.1 26.0 218 458-702 4-236 (251)
186 PRK14254 phosphate ABC transpo 100.0 1.4E-44 3.1E-49 383.8 27.2 219 457-702 38-270 (285)
187 PRK10895 lipopolysaccharide AB 100.0 8.2E-45 1.8E-49 376.8 24.7 218 458-702 3-227 (241)
188 PRK10584 putative ABC transpor 100.0 7E-45 1.5E-49 374.1 23.9 206 458-693 6-227 (228)
189 PRK14243 phosphate transporter 100.0 1.1E-44 2.4E-49 380.8 25.9 218 458-702 10-249 (264)
190 cd03235 ABC_Metallic_Cations A 100.0 3E-45 6.6E-50 372.9 20.8 198 460-694 1-213 (213)
191 TIGR00968 3a0106s01 sulfate AB 100.0 1.1E-44 2.5E-49 374.8 25.3 211 459-702 1-221 (237)
192 PRK11308 dppF dipeptide transp 100.0 9.2E-45 2E-49 391.6 25.6 226 458-712 5-257 (327)
193 PRK10247 putative ABC transpor 100.0 5.3E-45 1.2E-49 374.3 22.6 210 458-697 7-223 (225)
194 PRK14260 phosphate ABC transpo 100.0 8.4E-45 1.8E-49 380.7 24.6 218 458-702 7-244 (259)
195 TIGR03873 F420-0_ABC_ATP propo 100.0 1.1E-44 2.3E-49 379.3 25.3 220 459-710 2-234 (256)
196 PRK10771 thiQ thiamine transpo 100.0 1.5E-44 3.3E-49 372.7 26.0 210 459-703 2-221 (232)
197 PRK11247 ssuB aliphatic sulfon 100.0 9.8E-45 2.1E-49 379.1 24.9 204 458-697 12-219 (257)
198 cd03298 ABC_ThiQ_thiamine_tran 100.0 8.8E-45 1.9E-49 368.9 23.8 201 459-694 1-211 (211)
199 PRK13548 hmuV hemin importer A 100.0 1.9E-44 4.1E-49 377.8 26.7 214 458-702 2-231 (258)
200 PRK13641 cbiO cobalt transport 100.0 1.1E-44 2.3E-49 385.4 25.0 215 458-702 2-235 (287)
201 PRK11300 livG leucine/isoleuci 100.0 1.4E-44 3.1E-49 378.0 25.5 220 458-702 5-244 (255)
202 PRK10070 glycine betaine trans 100.0 1.2E-44 2.5E-49 398.4 26.0 209 473-711 42-266 (400)
203 PRK14252 phosphate ABC transpo 100.0 1.5E-44 3.2E-49 380.1 25.6 219 456-701 14-249 (265)
204 PRK13537 nodulation ABC transp 100.0 9.3E-45 2E-49 388.7 24.4 213 458-702 7-228 (306)
205 PRK14241 phosphate transporter 100.0 1.3E-44 2.8E-49 379.1 24.8 218 458-702 4-243 (258)
206 PRK15112 antimicrobial peptide 100.0 1.8E-44 3.8E-49 379.9 25.8 226 458-713 4-253 (267)
207 PRK14266 phosphate ABC transpo 100.0 1.4E-44 3E-49 377.1 24.8 218 458-702 3-235 (250)
208 PRK10253 iron-enterobactin tra 100.0 1.7E-44 3.7E-49 379.6 25.3 222 458-711 7-242 (265)
209 PRK11607 potG putrescine trans 100.0 1.8E-44 4E-49 395.4 26.3 213 458-703 19-241 (377)
210 cd03262 ABC_HisP_GlnQ_permease 100.0 8.3E-45 1.8E-49 369.5 21.6 201 459-690 1-213 (213)
211 PRK14263 phosphate ABC transpo 100.0 3E-44 6.5E-49 376.8 26.3 218 458-702 8-246 (261)
212 PRK11022 dppD dipeptide transp 100.0 2E-44 4.3E-49 389.1 25.5 227 458-711 3-255 (326)
213 TIGR01288 nodI ATP-binding ABC 100.0 1.9E-44 4E-49 386.4 25.1 213 458-702 4-225 (303)
214 PRK14275 phosphate ABC transpo 100.0 2.8E-44 6.1E-49 381.8 26.2 218 458-702 39-271 (286)
215 PRK10419 nikE nickel transport 100.0 1.8E-44 4E-49 379.9 24.2 239 458-722 3-262 (268)
216 TIGR01978 sufC FeS assembly AT 100.0 2E-44 4.4E-49 374.1 23.8 213 459-700 1-233 (243)
217 cd03269 ABC_putative_ATPase Th 100.0 1.5E-44 3.2E-49 367.0 22.4 201 459-694 1-210 (210)
218 PRK14255 phosphate ABC transpo 100.0 2.6E-44 5.7E-49 375.5 24.5 218 458-702 5-237 (252)
219 PRK09984 phosphonate/organopho 100.0 3.4E-44 7.3E-49 376.8 25.4 226 458-716 4-255 (262)
220 PRK09473 oppD oligopeptide tra 100.0 5.3E-44 1.2E-48 386.2 27.6 227 458-711 12-263 (330)
221 PRK14258 phosphate ABC transpo 100.0 3.4E-44 7.3E-49 376.6 25.0 219 457-702 6-246 (261)
222 TIGR03415 ABC_choXWV_ATP choli 100.0 3E-44 6.4E-49 392.5 25.0 210 471-710 36-264 (382)
223 cd03299 ABC_ModC_like Archeal 100.0 4E-44 8.6E-49 370.3 24.3 210 459-702 1-220 (235)
224 TIGR01277 thiQ thiamine ABC tr 100.0 4.5E-44 9.7E-49 364.4 24.2 202 459-695 1-212 (213)
225 PRK14246 phosphate ABC transpo 100.0 3.8E-44 8.3E-49 375.2 24.2 226 458-710 10-251 (257)
226 TIGR03522 GldA_ABC_ATP gliding 100.0 5.1E-44 1.1E-48 382.6 25.6 213 458-702 2-222 (301)
227 PRK14264 phosphate ABC transpo 100.0 7.1E-44 1.5E-48 382.0 26.4 218 458-702 45-290 (305)
228 PRK11701 phnK phosphonate C-P 100.0 1.2E-43 2.6E-48 371.8 27.5 225 458-708 6-249 (258)
229 PRK14265 phosphate ABC transpo 100.0 9.9E-44 2.2E-48 375.5 26.8 219 457-702 19-259 (274)
230 PRK11144 modC molybdate transp 100.0 6.5E-44 1.4E-48 389.2 25.2 211 459-703 2-220 (352)
231 PRK10418 nikD nickel transport 100.0 1.1E-43 2.3E-48 371.4 25.7 226 458-714 4-245 (254)
232 PRK13547 hmuV hemin importer A 100.0 1.2E-43 2.6E-48 374.0 25.8 213 459-702 2-245 (272)
233 PRK15093 antimicrobial peptide 100.0 1.2E-43 2.5E-48 384.1 26.4 225 458-712 3-261 (330)
234 PRK13536 nodulation factor exp 100.0 9.3E-44 2E-48 385.3 24.5 217 458-702 41-262 (340)
235 TIGR02982 heterocyst_DevA ABC 100.0 8.8E-44 1.9E-48 364.0 23.0 202 459-690 2-219 (220)
236 cd03234 ABCG_White The White s 100.0 4.5E-44 9.7E-49 367.7 20.9 213 459-694 4-226 (226)
237 cd03246 ABCC_Protease_Secretio 100.0 7.1E-44 1.5E-48 351.2 21.4 171 459-690 1-173 (173)
238 TIGR01188 drrA daunorubicin re 100.0 1.1E-43 2.4E-48 380.2 22.9 204 467-702 2-214 (302)
239 PRK11248 tauB taurine transpor 100.0 2.4E-43 5.2E-48 368.7 23.9 202 459-696 2-215 (255)
240 TIGR02142 modC_ABC molybdenum 100.0 3.1E-43 6.8E-48 384.3 25.2 208 463-703 4-223 (354)
241 TIGR03740 galliderm_ABC gallid 100.0 5.7E-43 1.2E-47 358.7 23.7 205 459-698 1-210 (223)
242 PRK15056 manganese/iron transp 100.0 7.3E-43 1.6E-47 368.6 24.2 210 458-701 6-230 (272)
243 PRK09580 sufC cysteine desulfu 100.0 8E-43 1.7E-47 363.3 22.8 219 459-699 2-233 (248)
244 COG1131 CcmA ABC-type multidru 100.0 1.4E-42 3.1E-47 368.8 24.9 214 458-702 4-227 (293)
245 cd03213 ABCG_EPDR ABCG transpo 100.0 8.1E-43 1.8E-47 350.1 21.5 181 458-694 3-194 (194)
246 TIGR02323 CP_lyasePhnK phospho 100.0 1.5E-42 3.2E-47 362.4 24.3 219 458-702 3-239 (253)
247 COG1118 CysA ABC-type sulfate/ 100.0 3.6E-43 7.9E-48 358.6 19.1 213 458-703 2-229 (345)
248 cd03233 ABC_PDR_domain1 The pl 100.0 9.4E-43 2E-47 351.8 22.0 189 458-694 3-202 (202)
249 cd03232 ABC_PDR_domain2 The pl 100.0 6.6E-43 1.4E-47 350.2 20.6 180 458-694 3-192 (192)
250 cd03297 ABC_ModC_molybdenum_tr 100.0 1.1E-42 2.3E-47 354.5 22.3 201 459-694 2-214 (214)
251 CHL00131 ycf16 sulfate ABC tra 100.0 1.8E-42 3.8E-47 361.6 24.1 213 458-699 7-239 (252)
252 cd03223 ABCD_peroxisomal_ALDP 100.0 1E-42 2.3E-47 340.6 21.0 164 459-689 1-164 (166)
253 PRK09544 znuC high-affinity zi 100.0 4E-42 8.7E-47 358.5 25.8 209 458-711 4-218 (251)
254 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.8E-42 6.2E-47 347.8 23.3 185 459-700 1-192 (200)
255 cd03230 ABC_DR_subfamily_A Thi 100.0 2E-42 4.4E-47 340.9 21.5 170 459-690 1-173 (173)
256 cd03229 ABC_Class3 This class 100.0 1.9E-42 4.1E-47 342.7 21.4 172 459-689 1-178 (178)
257 TIGR03608 L_ocin_972_ABC putat 100.0 1.5E-42 3.2E-47 351.1 20.1 194 461-685 1-206 (206)
258 cd03228 ABCC_MRP_Like The MRP 100.0 3.8E-42 8.3E-47 338.3 21.2 170 459-689 1-171 (171)
259 PRK03695 vitamin B12-transport 100.0 9.1E-42 2E-46 355.5 24.5 217 459-712 1-232 (248)
260 cd03215 ABC_Carb_Monos_II This 100.0 3.8E-42 8.3E-47 341.7 20.7 172 458-690 4-182 (182)
261 cd03214 ABC_Iron-Siderophores_ 100.0 3.6E-42 7.8E-47 341.3 20.1 177 460-694 1-180 (180)
262 TIGR02770 nickel_nikD nickel i 100.0 1.3E-41 2.7E-46 350.5 21.7 205 474-707 1-222 (230)
263 TIGR01184 ntrCD nitrate transp 100.0 1.9E-41 4.2E-46 349.1 22.8 191 475-700 1-203 (230)
264 cd03231 ABC_CcmA_heme_exporter 100.0 2.7E-41 5.9E-46 340.9 23.0 195 459-685 1-198 (201)
265 PRK15439 autoinducer 2 ABC tra 100.0 3.2E-41 6.9E-46 386.2 26.3 213 458-701 11-229 (510)
266 PRK10261 glutathione transport 100.0 4.1E-41 8.9E-46 393.2 26.8 225 458-712 313-566 (623)
267 PRK13549 xylose transporter AT 100.0 2.6E-41 5.6E-46 386.9 24.2 212 458-700 5-231 (506)
268 PRK13538 cytochrome c biogenes 100.0 3.9E-41 8.5E-46 340.5 22.4 195 459-685 2-202 (204)
269 PRK09700 D-allose transporter 100.0 2.2E-41 4.8E-46 387.9 23.0 213 458-701 5-234 (510)
270 PRK13540 cytochrome c biogenes 100.0 3.9E-41 8.4E-46 339.5 21.6 194 459-684 2-198 (200)
271 COG1123 ATPase components of v 100.0 4E-41 8.8E-46 372.9 23.6 224 458-711 280-530 (539)
272 cd03267 ABC_NatA_like Similar 100.0 2.8E-41 6E-46 349.3 20.9 193 471-694 33-236 (236)
273 cd03216 ABC_Carb_Monos_I This 100.0 8.9E-41 1.9E-45 326.0 22.3 159 459-692 1-162 (163)
274 PRK10762 D-ribose transporter 100.0 8E-41 1.7E-45 382.4 24.3 212 458-700 4-229 (501)
275 PRK15134 microcin C ABC transp 100.0 5.5E-41 1.2E-45 386.2 22.8 214 458-702 275-516 (529)
276 COG4175 ProV ABC-type proline/ 100.0 4.9E-41 1.1E-45 343.2 19.1 207 474-710 43-265 (386)
277 PRK13539 cytochrome c biogenes 100.0 1.7E-40 3.6E-45 336.7 22.5 194 459-687 3-200 (207)
278 PRK10982 galactose/methyl gala 100.0 8.9E-41 1.9E-45 381.2 22.9 213 461-700 1-222 (491)
279 PRK11288 araG L-arabinose tran 100.0 1.4E-40 2.9E-45 380.5 24.3 208 458-696 4-224 (501)
280 COG0444 DppD ABC-type dipeptid 100.0 2.8E-40 6.1E-45 343.2 24.2 224 459-712 2-256 (316)
281 COG4555 NatA ABC-type Na+ tran 100.0 2.7E-41 5.9E-46 325.5 15.3 214 459-703 2-224 (245)
282 PRK10261 glutathione transport 100.0 7.2E-41 1.6E-45 391.1 22.2 218 458-702 12-259 (623)
283 COG0410 LivF ABC-type branched 100.0 3E-40 6.5E-45 327.1 22.7 220 459-703 4-228 (237)
284 TIGR01189 ccmA heme ABC export 100.0 1.7E-40 3.6E-45 334.3 21.2 193 459-684 1-197 (198)
285 PLN03211 ABC transporter G-25; 100.0 2.7E-40 5.9E-45 386.3 26.1 204 471-701 80-296 (659)
286 PRK10938 putative molybdenum t 100.0 1.7E-40 3.6E-45 379.0 23.7 212 458-702 3-225 (490)
287 PRK15134 microcin C ABC transp 100.0 2.1E-40 4.6E-45 381.3 24.2 218 458-702 5-247 (529)
288 PRK13543 cytochrome c biogenes 100.0 4.1E-40 8.9E-45 335.6 22.8 196 458-687 11-212 (214)
289 TIGR02324 CP_lyasePhnL phospho 100.0 3.2E-40 6.9E-45 338.6 21.5 198 459-685 2-222 (224)
290 TIGR03771 anch_rpt_ABC anchore 100.0 2.2E-40 4.8E-45 339.6 20.0 195 480-711 1-210 (223)
291 PRK10535 macrolide transporter 100.0 6.4E-40 1.4E-44 384.5 26.3 213 458-700 4-231 (648)
292 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-40 6.7E-45 379.3 23.1 218 458-701 279-517 (520)
293 TIGR00955 3a01204 The Eye Pigm 100.0 7.1E-41 1.5E-45 390.8 17.9 216 458-701 17-256 (617)
294 TIGR02633 xylG D-xylose ABC tr 100.0 3.5E-40 7.5E-45 377.3 23.2 212 459-699 2-228 (500)
295 TIGR01166 cbiO cobalt transpor 100.0 2.1E-40 4.6E-45 331.3 18.1 178 468-675 1-189 (190)
296 COG1123 ATPase components of v 100.0 6.1E-40 1.3E-44 363.6 23.0 225 458-712 5-257 (539)
297 TIGR03269 met_CoM_red_A2 methy 100.0 5.1E-40 1.1E-44 377.5 22.9 213 459-702 1-259 (520)
298 COG4172 ABC-type uncharacteriz 100.0 2E-39 4.3E-44 339.8 24.6 219 458-706 276-522 (534)
299 COG4608 AppF ABC-type oligopep 100.0 4.2E-40 9.1E-45 335.2 19.0 195 458-712 4-212 (268)
300 PRK13541 cytochrome c biogenes 100.0 7.5E-40 1.6E-44 328.8 20.4 188 459-682 2-192 (195)
301 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 8.7E-40 1.9E-44 335.5 20.5 194 459-694 23-224 (224)
302 COG4619 ABC-type uncharacteriz 100.0 2.7E-40 5.9E-45 309.6 15.2 194 470-692 14-214 (223)
303 PRK13545 tagH teichoic acids e 100.0 3.2E-39 7E-44 359.1 26.6 211 458-711 21-242 (549)
304 PRK13546 teichoic acids export 100.0 3.8E-39 8.1E-44 338.2 25.2 198 472-712 37-243 (264)
305 PRK13549 xylose transporter AT 100.0 6.5E-40 1.4E-44 375.3 20.5 215 458-700 259-493 (506)
306 COG0411 LivG ABC-type branched 100.0 4.6E-40 9.9E-45 328.2 16.5 219 459-702 5-240 (250)
307 KOG0060 Long-chain acyl-CoA tr 100.0 7.2E-36 1.6E-40 325.6 47.2 343 314-687 260-641 (659)
308 PRK09700 D-allose transporter 100.0 2.9E-39 6.3E-44 370.4 21.4 209 458-698 265-495 (510)
309 TIGR01257 rim_protein retinal- 100.0 8.1E-39 1.8E-43 400.7 26.5 214 458-702 928-1150(2272)
310 COG1129 MglA ABC-type sugar tr 100.0 1.3E-38 2.7E-43 351.0 22.8 209 458-695 8-228 (500)
311 PRK11819 putative ABC transpor 100.0 1.9E-38 4E-43 366.9 24.0 208 458-702 6-251 (556)
312 TIGR00956 3a01205 Pleiotropic 100.0 5.8E-39 1.3E-43 401.5 21.2 210 458-697 759-989 (1394)
313 COG4559 ABC-type hemin transpo 100.0 2E-38 4.4E-43 307.9 20.0 213 459-702 2-231 (259)
314 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.9E-38 6.2E-43 365.2 24.5 208 458-702 4-249 (552)
315 cd03236 ABC_RNaseL_inhibitor_d 100.0 6.8E-39 1.5E-43 334.4 16.8 201 462-694 4-220 (255)
316 PRK15177 Vi polysaccharide exp 100.0 2.1E-38 4.6E-43 322.6 20.0 191 474-706 2-197 (213)
317 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-38 2.8E-43 364.3 20.5 212 458-698 257-489 (500)
318 cd03237 ABC_RNaseL_inhibitor_d 100.0 3E-38 6.4E-43 328.2 20.9 194 466-701 1-207 (246)
319 PRK10762 D-ribose transporter 100.0 1.4E-38 3.1E-43 363.8 20.1 209 458-700 257-483 (501)
320 TIGR01187 potA spermidine/putr 100.0 1.4E-38 3.1E-43 343.7 19.0 181 490-702 1-191 (325)
321 COG4181 Predicted ABC-type tra 100.0 1.9E-38 4E-43 298.1 17.1 206 458-693 6-227 (228)
322 PRK15064 ABC transporter ATP-b 100.0 4.1E-38 8.9E-43 362.5 23.6 209 459-701 2-242 (530)
323 PRK15064 ABC transporter ATP-b 100.0 5.7E-38 1.2E-42 361.2 24.6 203 458-704 319-528 (530)
324 PRK11288 araG L-arabinose tran 100.0 2E-38 4.4E-43 362.6 20.0 209 458-700 257-484 (501)
325 TIGR01257 rim_protein retinal- 100.0 1.1E-37 2.3E-42 390.6 26.8 216 458-704 1937-2162(2272)
326 COG1137 YhbG ABC-type (unclass 100.0 1.5E-38 3.2E-43 306.3 13.1 223 458-703 4-230 (243)
327 PRK15439 autoinducer 2 ABC tra 100.0 9.8E-38 2.1E-42 357.4 19.9 211 458-702 268-493 (510)
328 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 2.6E-37 5.7E-42 295.3 19.5 143 459-689 1-144 (144)
329 COG4598 HisP ABC-type histidin 100.0 7.5E-38 1.6E-42 296.0 14.9 214 458-702 6-242 (256)
330 COG3845 ABC-type uncharacteriz 100.0 3.8E-37 8.3E-42 332.5 21.9 207 458-695 4-223 (501)
331 COG4161 ArtP ABC-type arginine 100.0 2.7E-37 5.8E-42 287.4 16.5 213 458-701 2-230 (242)
332 PRK10938 putative molybdenum t 100.0 3.3E-37 7.2E-42 351.8 20.1 206 458-694 260-485 (490)
333 PRK10982 galactose/methyl gala 100.0 7.5E-37 1.6E-41 348.9 22.8 209 458-697 250-476 (491)
334 COG4148 ModC ABC-type molybdat 100.0 4.3E-37 9.2E-42 309.4 16.3 197 477-703 16-220 (352)
335 PLN03073 ABC transporter F fam 100.0 5E-36 1.1E-40 352.4 24.7 199 458-699 508-712 (718)
336 COG4525 TauB ABC-type taurine 100.0 4.2E-36 9E-41 287.9 18.4 204 458-696 3-219 (259)
337 PLN03140 ABC transporter G fam 100.0 6.4E-36 1.4E-40 373.1 25.3 213 457-697 866-1106(1470)
338 PRK11819 putative ABC transpor 100.0 1.1E-35 2.3E-40 344.0 24.8 202 458-702 324-534 (556)
339 cd00267 ABC_ATPase ABC (ATP-bi 100.0 9.5E-36 2.1E-40 288.6 20.1 155 460-689 1-157 (157)
340 PRK10636 putative ABC transpor 100.0 4.2E-35 9.1E-40 343.1 27.4 200 458-700 312-516 (638)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.2E-35 4.7E-40 341.2 24.3 201 458-701 322-531 (552)
342 PRK11147 ABC transporter ATPas 100.0 2.9E-35 6.4E-40 344.9 24.4 201 458-701 319-528 (635)
343 cd03222 ABC_RNaseL_inhibitor T 100.0 1.7E-35 3.7E-40 291.4 18.8 155 462-701 4-163 (177)
344 PRK13409 putative ATPase RIL; 100.0 4.1E-35 9E-40 338.8 22.9 192 458-695 340-536 (590)
345 cd03238 ABC_UvrA The excision 100.0 3.2E-35 7E-40 289.2 18.5 161 471-694 7-176 (176)
346 COG4604 CeuD ABC-type enteroch 100.0 8.8E-36 1.9E-40 286.2 14.0 221 459-711 2-234 (252)
347 TIGR00956 3a01205 Pleiotropic 100.0 2.8E-35 6.1E-40 368.5 19.8 208 472-700 74-299 (1394)
348 COG4172 ABC-type uncharacteriz 100.0 1.8E-34 3.8E-39 302.7 19.9 225 458-709 6-256 (534)
349 PRK10636 putative ABC transpor 100.0 5.7E-34 1.2E-38 333.6 25.6 219 459-701 2-236 (638)
350 COG1101 PhnK ABC-type uncharac 100.0 2.1E-34 4.5E-39 280.6 16.0 204 470-694 17-231 (263)
351 PRK11147 ABC transporter ATPas 100.0 1E-33 2.2E-38 331.9 24.8 208 458-702 3-244 (635)
352 PLN03140 ABC transporter G fam 100.0 1.3E-34 2.8E-39 361.4 17.7 209 472-701 178-427 (1470)
353 COG4167 SapF ABC-type antimicr 100.0 5E-34 1.1E-38 270.6 16.6 213 473-715 27-255 (267)
354 COG1119 ModF ABC-type molybden 100.0 1.6E-33 3.6E-38 281.2 19.9 207 458-695 31-256 (257)
355 PRK13409 putative ATPase RIL; 100.0 3.6E-34 7.9E-39 331.0 15.8 193 462-688 77-287 (590)
356 PLN03073 ABC transporter F fam 100.0 1.3E-32 2.9E-37 323.5 20.5 232 457-701 176-431 (718)
357 KOG0061 Transporter, ABC super 100.0 8E-33 1.7E-37 320.5 18.4 219 457-701 24-260 (613)
358 PF00005 ABC_tran: ABC transpo 100.0 2.6E-33 5.6E-38 264.7 11.5 136 475-643 1-137 (137)
359 KOG0064 Peroxisomal long-chain 100.0 7.9E-29 1.7E-33 266.8 46.9 336 317-686 301-682 (728)
360 COG0396 sufC Cysteine desulfur 100.0 1E-31 2.2E-36 265.2 21.6 215 458-701 3-233 (251)
361 COG0488 Uup ATPase components 100.0 2.8E-31 6.2E-36 299.9 22.3 223 458-703 3-242 (530)
362 COG4152 ABC-type uncharacteriz 100.0 8.6E-32 1.9E-36 266.8 15.7 214 458-703 2-221 (300)
363 COG1134 TagH ABC-type polysacc 100.0 5.7E-31 1.2E-35 263.4 21.1 188 472-702 40-237 (249)
364 cd03270 ABC_UvrA_I The excisio 100.0 4.1E-31 8.8E-36 271.5 17.4 191 470-694 6-226 (226)
365 COG4136 ABC-type uncharacteriz 100.0 3.6E-31 7.9E-36 243.9 14.9 195 458-695 2-209 (213)
366 COG4674 Uncharacterized ABC-ty 100.0 1.1E-30 2.4E-35 250.8 16.1 214 458-702 5-236 (249)
367 COG0488 Uup ATPase components 100.0 1.3E-29 2.8E-34 286.5 26.4 204 457-703 320-527 (530)
368 cd03271 ABC_UvrA_II The excisi 100.0 1.6E-30 3.5E-35 270.7 13.9 194 473-696 9-261 (261)
369 cd03278 ABC_SMC_barmotin Barmo 100.0 4.8E-30 1E-34 257.9 13.7 164 476-687 14-190 (197)
370 COG4586 ABC-type uncharacteriz 100.0 1.5E-29 3.2E-34 254.7 12.2 211 473-710 38-255 (325)
371 COG4133 CcmA ABC-type transpor 100.0 4.6E-29 1E-33 239.2 12.8 187 461-679 5-196 (209)
372 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.5E-29 5.4E-34 256.0 11.4 192 458-690 5-211 (213)
373 cd03272 ABC_SMC3_euk Eukaryoti 100.0 8E-29 1.7E-33 257.2 14.3 192 458-686 3-234 (243)
374 COG4107 PhnK ABC-type phosphon 100.0 1.7E-28 3.6E-33 231.4 14.9 227 458-712 6-253 (258)
375 COG4778 PhnL ABC-type phosphon 99.9 1.9E-27 4.1E-32 223.7 12.3 199 458-686 4-226 (235)
376 cd03273 ABC_SMC2_euk Eukaryoti 99.9 7.6E-27 1.7E-31 243.7 11.6 188 485-686 25-242 (251)
377 KOG0059 Lipid exporter ABCA1 a 99.9 2.5E-26 5.4E-31 277.2 16.9 219 458-706 564-792 (885)
378 cd03274 ABC_SMC4_euk Eukaryoti 99.9 5.3E-27 1.1E-31 238.4 9.4 184 458-687 5-204 (212)
379 cd03240 ABC_Rad50 The catalyti 99.9 2.5E-26 5.4E-31 232.3 12.9 164 478-688 16-198 (204)
380 PRK00635 excinuclease ABC subu 99.9 1.7E-25 3.8E-30 277.2 20.7 213 458-703 600-908 (1809)
381 PRK00349 uvrA excinuclease ABC 99.9 1E-25 2.2E-30 269.2 16.4 92 615-706 831-932 (943)
382 COG4138 BtuD ABC-type cobalami 99.9 2.4E-26 5.1E-31 217.2 6.3 208 459-702 4-222 (248)
383 COG1129 MglA ABC-type sugar tr 99.9 8.5E-25 1.8E-29 241.7 19.4 213 458-698 263-487 (500)
384 KOG0927 Predicted transporter 99.9 8.2E-26 1.8E-30 245.6 11.1 193 458-692 389-586 (614)
385 KOG0065 Pleiotropic drug resis 99.9 2.8E-25 6E-30 262.9 11.3 198 471-697 803-1017(1391)
386 cd03275 ABC_SMC1_euk Eukaryoti 99.9 6.9E-25 1.5E-29 228.5 11.7 192 486-687 23-233 (247)
387 PF00664 ABC_membrane: ABC tra 99.9 6.2E-21 1.4E-25 196.8 39.0 273 128-413 2-275 (275)
388 TIGR00630 uvra excinuclease AB 99.9 1.2E-23 2.7E-28 251.0 21.0 85 615-699 829-923 (924)
389 COG3845 ABC-type uncharacteriz 99.9 7.7E-23 1.7E-27 221.8 22.2 214 457-698 256-489 (501)
390 cd01128 rho_factor Transcripti 99.9 5.3E-23 1.1E-27 213.0 8.8 197 480-713 11-229 (249)
391 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.1E-22 4.6E-27 202.6 12.0 172 475-689 12-192 (198)
392 KOG0062 ATPase component of AB 99.9 9.8E-22 2.1E-26 212.9 17.3 194 457-692 361-559 (582)
393 KOG0927 Predicted transporter 99.9 3E-21 6.6E-26 210.2 18.8 220 457-702 74-310 (614)
394 COG1245 Predicted ATPase, RNas 99.8 9E-21 2E-25 202.5 15.1 181 463-687 340-531 (591)
395 KOG0066 eIF2-interacting prote 99.8 8.1E-21 1.8E-25 200.8 14.3 192 457-691 585-780 (807)
396 cd03239 ABC_SMC_head The struc 99.8 1.2E-20 2.5E-25 186.7 13.3 73 615-687 95-172 (178)
397 KOG0062 ATPase component of AB 99.8 1.1E-20 2.4E-25 204.8 9.9 202 456-702 78-286 (582)
398 COG4170 SapD ABC-type antimicr 99.8 7.9E-20 1.7E-24 177.6 13.9 207 472-708 20-256 (330)
399 cd03241 ABC_RecN RecN ATPase i 99.8 5.7E-20 1.2E-24 194.6 13.7 76 614-689 170-249 (276)
400 cd03280 ABC_MutS2 MutS2 homolo 99.8 5E-20 1.1E-24 185.8 11.7 145 475-694 17-172 (200)
401 KOG0065 Pleiotropic drug resis 99.8 5E-20 1.1E-24 218.7 13.0 206 473-701 129-351 (1391)
402 cd03277 ABC_SMC5_euk Eukaryoti 99.8 1.2E-19 2.6E-24 184.6 11.5 180 476-689 15-211 (213)
403 COG0178 UvrA Excinuclease ATPa 99.8 8.4E-19 1.8E-23 198.9 17.5 93 615-707 823-925 (935)
404 KOG2355 Predicted ABC-type tra 99.8 1.6E-18 3.4E-23 168.3 16.0 206 457-696 12-232 (291)
405 COG2401 ABC-type ATPase fused 99.8 1.2E-18 2.6E-23 184.3 14.1 179 473-692 397-589 (593)
406 PRK00635 excinuclease ABC subu 99.8 2.9E-18 6.3E-23 213.5 19.3 211 473-703 1504-1798(1809)
407 cd03227 ABC_Class2 ABC-type Cl 99.7 2.6E-18 5.6E-23 167.5 9.5 73 615-687 78-155 (162)
408 cd03285 ABC_MSH2_euk MutS2 hom 99.7 5.7E-18 1.2E-22 173.4 11.4 153 471-695 16-175 (222)
409 cd00820 PEPCK_HprK Phosphoenol 99.7 5.5E-18 1.2E-22 151.8 6.4 76 472-555 2-77 (107)
410 cd03242 ABC_RecF RecF is a rec 99.7 1.1E-16 2.5E-21 168.9 13.9 194 476-690 13-269 (270)
411 COG1245 Predicted ATPase, RNas 99.7 6.6E-17 1.4E-21 173.2 11.7 190 463-686 79-287 (591)
412 PRK00349 uvrA excinuclease ABC 99.7 1.1E-16 2.3E-21 192.2 13.7 88 615-702 490-586 (943)
413 TIGR00630 uvra excinuclease AB 99.7 1.2E-16 2.6E-21 191.4 12.3 88 615-702 488-584 (924)
414 cd03243 ABC_MutS_homologs The 99.7 9.6E-17 2.1E-21 162.2 9.4 85 615-700 92-178 (202)
415 TIGR00606 rad50 rad50. This fa 99.7 1.7E-16 3.7E-21 200.1 13.6 118 544-685 1153-1288(1311)
416 cd03283 ABC_MutS-like MutS-lik 99.6 8.1E-16 1.7E-20 154.9 9.1 145 471-685 13-163 (199)
417 TIGR02858 spore_III_AA stage I 99.6 2.5E-15 5.4E-20 157.6 11.8 142 486-700 112-268 (270)
418 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.6E-14 3.4E-19 147.4 11.1 152 471-699 17-179 (216)
419 cd03282 ABC_MSH4_euk MutS4 hom 99.5 4.3E-14 9.4E-19 142.8 11.1 141 471-680 15-158 (204)
420 PRK00064 recF recombination pr 99.5 6.2E-14 1.3E-18 153.9 12.6 80 609-690 268-359 (361)
421 KOG0063 RNAse L inhibitor, ABC 99.5 9.9E-14 2.2E-18 147.8 13.4 203 465-708 342-555 (592)
422 PHA02562 46 endonuclease subun 99.5 2.6E-14 5.5E-19 166.4 9.1 112 564-690 432-555 (562)
423 PF02463 SMC_N: RecF/RecN/SMC 99.5 4.3E-14 9.2E-19 144.6 9.1 71 615-685 137-211 (220)
424 KOG0066 eIF2-interacting prote 99.5 9.8E-14 2.1E-18 147.6 9.5 197 458-696 264-494 (807)
425 PRK07721 fliI flagellum-specif 99.4 2.2E-12 4.8E-17 143.7 16.9 177 471-696 145-338 (438)
426 TIGR00634 recN DNA repair prot 99.3 1.8E-12 3.9E-17 150.5 9.5 75 615-689 441-519 (563)
427 PTZ00132 GTP-binding nuclear p 99.3 1.2E-12 2.7E-17 133.3 6.5 47 615-661 151-204 (215)
428 PRK10869 recombination and rep 99.3 4.6E-12 1E-16 146.1 10.0 75 615-689 431-509 (553)
429 cd03281 ABC_MSH5_euk MutS5 hom 99.3 1.2E-11 2.7E-16 125.9 11.3 135 473-679 17-160 (213)
430 TIGR01069 mutS2 MutS2 family p 99.3 1.8E-11 3.9E-16 145.7 14.2 145 457-676 294-448 (771)
431 PRK13695 putative NTPase; Prov 99.2 8.5E-12 1.8E-16 123.0 6.1 76 615-693 79-156 (174)
432 TIGR02788 VirB11 P-type DNA tr 99.2 1.8E-11 3.9E-16 131.7 8.7 144 478-701 137-281 (308)
433 smart00534 MUTSac ATPase domai 99.2 1.3E-11 2.8E-16 123.1 6.0 72 615-689 62-138 (185)
434 COG0178 UvrA Excinuclease ATPa 99.2 1.1E-10 2.4E-15 133.6 12.5 90 614-703 481-579 (935)
435 TIGR00611 recf recF protein. A 99.2 1.3E-10 2.8E-15 127.7 12.6 64 612-677 273-345 (365)
436 cd03287 ABC_MSH3_euk MutS3 hom 99.2 7.9E-11 1.7E-15 120.4 9.6 48 471-518 17-65 (222)
437 PRK14079 recF recombination pr 99.2 3.5E-10 7.5E-15 123.8 14.8 78 610-692 259-345 (349)
438 PRK08533 flagellar accessory p 99.1 6.3E-10 1.4E-14 114.8 14.3 71 615-686 96-184 (230)
439 PRK00409 recombination and DNA 99.1 5.9E-10 1.3E-14 133.2 14.1 75 615-691 391-468 (782)
440 TIGR03238 dnd_assoc_3 dnd syst 99.1 5.1E-11 1.1E-15 131.6 4.2 67 473-542 20-87 (504)
441 TIGR00767 rho transcription te 99.1 2.1E-10 4.5E-15 124.9 8.7 83 425-512 102-195 (415)
442 PRK01156 chromosome segregatio 99.1 3E-10 6.5E-15 139.4 10.0 74 613-686 800-883 (895)
443 PRK06793 fliI flagellum-specif 99.1 1.3E-09 2.8E-14 120.9 13.2 168 458-695 130-305 (432)
444 PRK03918 chromosome segregatio 99.0 3.9E-10 8.5E-15 138.3 10.0 75 613-687 787-868 (880)
445 TIGR02168 SMC_prok_B chromosom 99.0 2.7E-10 5.8E-15 143.6 8.4 75 611-685 1086-1164(1179)
446 PRK10733 hflB ATP-dependent me 99.0 3.3E-11 7.2E-16 141.6 0.0 162 317-510 41-210 (644)
447 KOG0063 RNAse L inhibitor, ABC 99.0 6E-10 1.3E-14 119.3 9.2 170 483-686 98-287 (592)
448 PRK13830 conjugal transfer pro 99.0 4E-09 8.8E-14 127.3 16.1 71 629-700 649-731 (818)
449 cd01124 KaiC KaiC is a circadi 99.0 3.3E-09 7.1E-14 105.3 12.8 72 615-686 72-163 (187)
450 TIGR00618 sbcc exonuclease Sbc 99.0 1.1E-09 2.4E-14 136.2 10.4 76 613-688 949-1036(1042)
451 cd01120 RecA-like_NTPases RecA 98.9 2.5E-09 5.4E-14 102.7 9.0 62 615-676 68-140 (165)
452 smart00382 AAA ATPases associa 98.9 3.5E-08 7.6E-13 91.2 16.3 117 484-672 1-125 (148)
453 cd01131 PilT Pilus retraction 98.9 2.1E-09 4.6E-14 108.3 7.5 57 624-686 66-122 (198)
454 TIGR02169 SMC_prok_A chromosom 98.9 2.5E-09 5.4E-14 134.9 9.2 75 613-687 1073-1151(1164)
455 PRK00300 gmk guanylate kinase; 98.9 1.1E-09 2.3E-14 110.7 3.3 78 483-569 3-92 (205)
456 cd03286 ABC_MSH6_euk MutS6 hom 98.8 1.7E-08 3.7E-13 103.0 10.2 49 631-679 108-159 (218)
457 PRK06002 fliI flagellum-specif 98.8 9.5E-09 2.1E-13 114.2 8.8 85 457-542 138-229 (450)
458 PRK02224 chromosome segregatio 98.8 1.2E-08 2.7E-13 125.1 9.0 76 613-688 780-869 (880)
459 PF13304 AAA_21: AAA domain; P 98.8 1.5E-08 3.4E-13 103.6 7.9 63 614-676 236-302 (303)
460 PRK06067 flagellar accessory p 98.8 8.2E-08 1.8E-12 99.3 13.1 73 615-687 101-187 (234)
461 PRK10246 exonuclease subunit S 98.7 2.7E-08 5.9E-13 123.3 9.5 74 613-686 948-1031(1047)
462 PRK12369 putative transporter; 98.7 0.00032 6.9E-09 76.0 38.2 58 382-439 264-321 (326)
463 PRK11098 microcin B17 transpor 98.7 0.00044 9.6E-09 76.7 39.6 58 382-439 338-395 (409)
464 PRK01889 GTPase RsgA; Reviewed 98.6 2.7E-08 5.8E-13 109.2 5.9 99 475-576 185-287 (356)
465 cd01130 VirB11-like_ATPase Typ 98.6 4.8E-08 1E-12 97.5 6.6 96 474-572 14-121 (186)
466 PRK13891 conjugal transfer pro 98.6 6.9E-07 1.5E-11 108.6 17.3 54 625-678 680-735 (852)
467 PRK07196 fliI flagellum-specif 98.6 4E-08 8.7E-13 109.2 5.3 82 472-554 143-234 (434)
468 PF06472 ABC_membrane_2: ABC t 98.6 0.0006 1.3E-08 72.6 36.8 224 127-367 29-257 (281)
469 PRK06995 flhF flagellar biosyn 98.5 8.5E-08 1.8E-12 108.0 5.6 61 477-556 248-308 (484)
470 PF09818 ABC_ATPase: Predicted 98.5 1.2E-06 2.7E-11 95.8 14.4 172 464-691 227-417 (448)
471 TIGR01420 pilT_fam pilus retra 98.5 4.9E-07 1.1E-11 98.9 9.6 54 624-683 187-240 (343)
472 TIGR01026 fliI_yscN ATPase Fli 98.4 1.3E-06 2.8E-11 97.9 11.8 184 470-698 149-345 (440)
473 PRK08149 ATP synthase SpaL; Va 98.4 2.4E-07 5.2E-12 102.9 5.8 69 472-541 139-214 (428)
474 cd01125 repA Hexameric Replica 98.4 4.1E-07 8.9E-12 94.4 7.1 44 629-673 108-159 (239)
475 COG3910 Predicted ATPase [Gene 98.4 2.7E-06 5.9E-11 82.8 11.6 83 615-699 130-214 (233)
476 TIGR02655 circ_KaiC circadian 98.4 6.4E-08 1.4E-12 110.6 0.1 156 481-686 17-190 (484)
477 TIGR02524 dot_icm_DotB Dot/Icm 98.4 3.7E-07 8.1E-12 100.0 6.0 88 483-572 132-234 (358)
478 PRK10078 ribose 1,5-bisphospho 98.3 5.4E-07 1.2E-11 89.8 5.4 55 485-542 2-56 (186)
479 PRK13898 type IV secretion sys 98.3 1.4E-05 3E-10 97.1 18.2 203 478-687 439-709 (800)
480 PRK09825 idnK D-gluconate kina 98.3 5.1E-07 1.1E-11 89.3 4.6 66 484-555 2-69 (176)
481 TIGR03263 guanyl_kin guanylate 98.3 3.6E-07 7.8E-12 90.3 3.3 78 485-571 1-90 (180)
482 PF13748 ABC_membrane_3: ABC t 98.3 0.0023 4.9E-08 65.2 30.2 37 122-158 7-43 (237)
483 cd00071 GMPK Guanosine monopho 98.3 2.6E-07 5.5E-12 87.6 1.3 72 488-568 2-86 (137)
484 PRK15494 era GTPase Era; Provi 98.2 6.5E-07 1.4E-11 97.8 3.4 54 455-508 15-75 (339)
485 cd02023 UMPK Uridine monophosp 98.2 9.9E-07 2.2E-11 88.7 4.3 23 487-509 1-23 (198)
486 TIGR03881 KaiC_arch_4 KaiC dom 98.2 2.1E-06 4.4E-11 88.4 6.7 40 481-520 16-56 (229)
487 PLN03210 Resistant to P. syrin 98.2 3E-06 6.5E-11 106.8 9.4 44 478-521 200-244 (1153)
488 TIGR02322 phosphon_PhnN phosph 98.2 2.3E-06 5E-11 84.5 6.6 62 485-547 1-78 (179)
489 PLN02796 D-glycerate 3-kinase 98.2 5.5E-07 1.2E-11 97.0 1.9 62 472-533 79-151 (347)
490 TIGR00101 ureG urease accessor 98.2 2.7E-06 5.8E-11 85.9 6.4 99 487-595 3-103 (199)
491 TIGR02680 conserved hypothetic 98.2 2.6E-06 5.7E-11 108.1 7.8 60 613-674 1246-1317(1353)
492 PRK06315 type III secretion sy 98.2 1.9E-06 4.1E-11 96.2 5.6 101 473-574 153-276 (442)
493 TIGR03497 FliI_clade2 flagella 98.1 3.5E-06 7.6E-11 93.7 5.9 58 468-526 121-178 (413)
494 PRK03846 adenylylsulfate kinas 98.1 2.3E-06 5.1E-11 86.2 4.0 56 483-542 22-78 (198)
495 TIGR00235 udk uridine kinase. 98.1 1.8E-06 3.9E-11 87.6 3.0 44 483-547 4-47 (207)
496 PRK05480 uridine/cytidine kina 98.1 5.9E-06 1.3E-10 83.9 6.4 66 483-569 4-75 (209)
497 TIGR02903 spore_lon_C ATP-depe 98.0 1.8E-05 3.8E-10 93.0 10.5 40 485-524 175-222 (615)
498 PRK09183 transposase/IS protei 98.0 7.5E-06 1.6E-10 86.1 6.6 50 460-510 73-127 (259)
499 cd01136 ATPase_flagellum-secre 98.0 6.1E-06 1.3E-10 88.9 5.9 57 468-525 53-109 (326)
500 PRK13873 conjugal transfer ATP 98.0 8.9E-05 1.9E-09 90.3 16.4 64 626-689 629-704 (811)
No 1
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-120 Score=1014.75 Aligned_cols=572 Identities=30% Similarity=0.439 Sum_probs=510.9
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 004826 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (728)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (728)
..+++++.|++ +.++++..++++++++++..+.+|.+++.++|.+........ .+... . ..+
T Consensus 133 ~~~~rl~~l~~-----~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~------~~~~~----~---~~l 194 (716)
T KOG0058|consen 133 TLLKRLLGLLK-----PEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSAD------ALKRA----C---TIL 194 (716)
T ss_pred hHHHHHHHHhc-----hhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHH------HHHHH----H---HHH
Confidence 46788999987 457778888888899999999999999999998864111100 11100 0 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004826 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (728)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (728)
.++..+.++++.+|.+++..+++++..++|..+|+++++++++|||.+++||+++|++.|...+...+...+...+...+
T Consensus 195 ~~l~~~~a~~~~~r~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~ 274 (716)
T KOG0058|consen 195 LGLFLIGALANAIRGGLLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLV 274 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11222446788999999999999999999999999999999999999999999999999998888777766666676666
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 004826 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (728)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~ 345 (728)
..+..+ .++++.+|.++++.++.+|+.+++...+.++.+++.++.+++.++.++...|.+++|+|||+|+.|+.|.+||
T Consensus 275 ~~~g~~-~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry 353 (716)
T KOG0058|consen 275 QGFGGL-GFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRY 353 (716)
T ss_pred HHHHhH-HHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHH
Confidence 554443 3455678999999999999988888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (728)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~ 425 (728)
.+..++..+...|.....+.+....++........++++|++++.+|+||.|++++|+.|..++..++..++.+++++++
T Consensus 354 ~~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmk 433 (716)
T KOG0058|consen 354 NKKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMK 433 (716)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988887777777666666667777788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEec--CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHH
Q 004826 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (728)
Q Consensus 426 a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~ 503 (728)
+..+.+|++|++|.+|..+......|. ...|.|+|+||+|+|| ++.|||+|+||+|+|||+||+||||||||||+++
T Consensus 434 gvGAs~rvFel~dr~P~i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTias 512 (716)
T KOG0058|consen 434 GVGASERVFELMDRKPRIPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIAS 512 (716)
T ss_pred hcchHHHHHHHhccCCCCCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHH
Confidence 999999999999999987655322333 3568999999999999 4568999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCC
Q 004826 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (728)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~ 583 (728)
||.|||+|++|+|++||+||+++++.+||++||+|.|||.||++||+|||+||.+++++|||.+||+.|++||||.++|+
T Consensus 513 LL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~ 592 (716)
T KOG0058|consen 513 LLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPD 592 (716)
T ss_pred HHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCC
Q 004826 584 KYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN 663 (728)
Q Consensus 584 G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~ 663 (728)
||||.|||+|.. |||||||||||||||+|||.||||||||||||+++|..|+++|.+++++
T Consensus 593 gY~T~VGEkG~q-------------------LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~ 653 (716)
T KOG0058|consen 593 GYNTVVGEKGSQ-------------------LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQG 653 (716)
T ss_pred ccccccCCcccc-------------------ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcC
Confidence 999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred CeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhcc-chHHHHHHhhhcc
Q 004826 664 RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNNT 716 (728)
Q Consensus 664 ~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~-g~Y~~l~~~q~~~ 716 (728)
||||+||||||||++||+|+|+|+|+|+|.|+|+|||++. |.|++|.++|...
T Consensus 654 rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q~~~ 707 (716)
T KOG0058|consen 654 RTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQLDS 707 (716)
T ss_pred CeEEEEehhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999986 8999999999654
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=1.4e-111 Score=979.09 Aligned_cols=608 Identities=30% Similarity=0.440 Sum_probs=521.1
Q ss_pred CccCceeeccCCCCcccee----cccccCC-----CCccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHHHH
Q 004826 56 RFSPITSFLSDSASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLR 126 (728)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (728)
+.+++++++.||+.|++.+ |.+.|+| +|.++. +... + ....+.++++.++ .++..
T Consensus 92 ~~~~~~~~v~dp~~g~~~l~~~e~~~~~tg~~l~l~~~~~~--~~~~-----~----~~~~~~~f~~~~~-----~~~~~ 155 (709)
T COG2274 92 KIDKNKVVVLDPAKGIRRLSLEEFEKLWTGIALLLAPTASR--KFKD-----I----PPFGLSWFIPLLF-----KYRRL 155 (709)
T ss_pred EecCCeEEEEeCCCCcEEcCHHHHHHhhheeEEEEeccccc--cccc-----c----cccchHhHHHHHH-----hhHHH
Confidence 3677789999999999998 8888887 555442 0000 1 1112344555554 34555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (728)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (728)
+.-.++..++..+++++.|++.+.++|.+...... .++..+ +..++ +..+...++..+|++++.++
T Consensus 156 l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~-------~tL~vl----~ig~~---~~~l~~~~l~~lr~~~~~~~ 221 (709)
T COG2274 156 LFEVLLASLLLQLLALATPLFSQIVIDKVLPDASR-------STLTVL----AIGLL---LAALFEALLRLLRTYLIAHL 221 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch-------hHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 56666666777889999999999999998753221 111111 11111 22224467889999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004826 207 ALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWIT 286 (728)
Q Consensus 207 ~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~ 286 (728)
+.|+..++..++|+|++++|+.||+++++||+.+|++. .+.+..+++..+..++..++.. ++.+.++++++|+++|++
T Consensus 222 ~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~e-l~~Ir~flt~~~l~~iiD~~~~-~i~l~vm~~ys~~L~li~ 299 (709)
T COG2274 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVRE-LEQIREFLTGSILTLIIDLLFA-LIFLAVMFLYSWKLTLIV 299 (709)
T ss_pred HHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 4556656555444443333322 233345666889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 287 SLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFL 366 (728)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (728)
++.+++++++..+..+..++..++..+..++.++.+.|++.|+++||+.+.|+++..+|++...++.+...+..+.....
T Consensus 300 l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 379 (709)
T COG2274 300 LAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALIL 379 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999998888888777766666666677778889999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 004826 367 NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR 446 (728)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~~ 446 (728)
+.+..++..+...+++|+|+++|++|++|+|+++||.++.+++..|+..+.+++.++++...+.+|+.++++.|+|.+.+
T Consensus 380 ~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~ 459 (709)
T COG2274 380 NTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGD 459 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999875443
Q ss_pred CCCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC
Q 004826 447 DNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (728)
Q Consensus 447 ~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (728)
......+...|+|+|+||+|+|+++ +++|+|+||+|+|||+|||||+||||||||+|||+|+|+|++|+|++||+|+.+
T Consensus 460 ~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~ 539 (709)
T COG2274 460 KTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLND 539 (709)
T ss_pred cccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHh
Confidence 3223334456899999999999865 569999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 526 i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
++++++|++|+||+||++||+|||+|||++|+|++++||+++||+.|++||||++||.||||+|||+|.+
T Consensus 540 i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~---------- 609 (709)
T COG2274 540 IDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN---------- 609 (709)
T ss_pred cCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVl 685 (728)
|||||||||+|||||++||+||||||||||||++||+.|+++|.+...+||+|+||||++|+++||||+||
T Consensus 610 ---------LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl 680 (709)
T COG2274 610 ---------LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVL 680 (709)
T ss_pred ---------CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 686 ENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
|+|||+|+|||+||++.+|.|+++|..|.
T Consensus 681 ~~Gkiv~~gs~~ell~~~g~y~~l~~~q~ 709 (709)
T COG2274 681 DQGKIVEQGSHEELLAQGGLYARLYQQQE 709 (709)
T ss_pred cCCceeccCCHHHHHHhcChHHHHHhccC
Confidence 99999999999999999999999998873
No 3
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-111 Score=913.24 Aligned_cols=580 Identities=63% Similarity=0.955 Sum_probs=541.1
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 004826 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (728)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (728)
+...+.+..|.|++.+|..+.+++.++++++.+.++.+.+|++++..+|.+....+. + +.+..+...+++
T Consensus 10 ~~~~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~-------~---a~~~~~~~~~~~ 79 (591)
T KOG0057|consen 10 LKILRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGN-------P---AVLSTITALLAG 79 (591)
T ss_pred hHHHHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccC-------c---chhhhhhHHHHH
Confidence 678899999999999999999999999999999999999999999999987422111 1 112223456678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004826 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (728)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (728)
|+++++.+.+|+.++..++.++.+++.++...++|+|++.+++++|.+..+|++.+++++.++++..++...+.+++|.+
T Consensus 80 y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~ 159 (591)
T KOG0057|consen 80 YGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTL 159 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 004826 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (728)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~ 344 (728)
+.+.++.+++.+.+++..+++.+..+..|..+.+.++.|+.+++++++++.++.+..+.|++.|.++||+||.|++|.++
T Consensus 160 ~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~ 239 (591)
T KOG0057|consen 160 FEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASR 239 (591)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 99888888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (728)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~ 424 (728)
|++...++.+...+..+..+++++++..+|+...+.+++.+...+.+|.||+|+++...++++++..|++.|+..+.++.
T Consensus 240 y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~ 319 (591)
T KOG0057|consen 240 YDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELR 319 (591)
T ss_pred HHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHH
Q 004826 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (728)
Q Consensus 425 ~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~L 504 (728)
+++.+++.++.+.+...++.+. +.+....++.|+|+||+|+|++++++|+++||+|++||+|||||+|||||||++++
T Consensus 320 q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~ 397 (591)
T KOG0057|consen 320 QALTDMRTLFILLEVDEDIQEA--ALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRL 397 (591)
T ss_pred HHHHhHHHHHhhhhhhhhhhhc--cCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHH
Confidence 9999999998877655443332 22333345789999999999988899999999999999999999999999999999
Q ss_pred HhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCc
Q 004826 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (728)
Q Consensus 505 L~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G 584 (728)
|+|||| ++|+|+|||+||++++++++|+.|||||||..|||+||.+||.||+|++++||+.++||++++||.|.+||+|
T Consensus 398 LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~G 476 (591)
T KOG0057|consen 398 LLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDG 476 (591)
T ss_pred HHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhcccc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCC
Q 004826 585 YSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR 664 (728)
Q Consensus 585 ~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~ 664 (728)
|+|.|||+|.. |||||||||+||||++|||||++||||||+||++||+.|.+.+.....+|
T Consensus 477 Y~T~VGerG~~-------------------LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~r 537 (591)
T KOG0057|consen 477 YQTLVGERGLM-------------------LSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGR 537 (591)
T ss_pred chhhHhhcccc-------------------cccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCC
Confidence 99999999988 99999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 665 TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 665 TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
|+|+|+||++++++||+|+|||||+++|.|+|+||+++.+.|+++|..|...
T Consensus 538 TvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~~~~w~~~~~~ 589 (591)
T KOG0057|consen 538 TVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELYADLWTTQTSS 589 (591)
T ss_pred eEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHHHHHhcccccc
Confidence 9999999999999999999999999999999999999999999999988654
No 4
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-113 Score=906.06 Aligned_cols=578 Identities=47% Similarity=0.754 Sum_probs=520.8
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004826 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (728)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (728)
.+....|+|+..++..+...+.+++++.+.-++.+..|.+.++++|.+........ ++ .+..+.+....+.
T Consensus 198 ~~~~~~ylwp~~~~alql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~~------~~---~~~~v~L~flqg~ 268 (790)
T KOG0056|consen 198 LRTVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQY------SL---VFLYVFLKFLQGG 268 (790)
T ss_pred eEEeccccccCCCcchhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhhH------HH---HHHHHHHHHHhcC
Confidence 44567788877666677777888888888888999999999999998863221111 00 1100111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004826 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (728)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (728)
. ...++++.+|++++..+.+-..+++..++|+|+++++++||-++.+|++.+.++++++.+. ++...++++.|.++.+
T Consensus 269 g-tgsG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl 346 (790)
T KOG0056|consen 269 G-TGSGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDL 346 (790)
T ss_pred C-ccccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHh
Confidence 1 1336778899999999999999999999999999999999999999999999999888777 7788899999999888
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 004826 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (728)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~ 347 (728)
.+.++.+.+.+++++.+++++.+.++......++.|+.+.+++++.+.++......+++-|.+|||.|++|+++.++|.+
T Consensus 347 ~va~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYre 426 (790)
T KOG0056|consen 347 GVAMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYRE 426 (790)
T ss_pred hhhhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHH
Confidence 77666666667888999999999999988888999999999999888888888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (728)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~ 427 (728)
...+|.+...|......+++..++.++.+.+.+..++++|.|..+.+|+|+++.|.+|+.++..|++.++..+..+|.+.
T Consensus 427 Ail~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nf 506 (790)
T KOG0056|consen 427 AILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNF 506 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhh
Confidence 99999999888888788888888888888777777788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 428 ~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
.++|+++++++++++..+.++..|....+|.|+|+||+|+|++++|||+||||+++||+++|+|||||+||||+++||.|
T Consensus 507 iDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred hhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 99999999999999888777777777778999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccc
Q 004826 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (728)
Q Consensus 508 ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT 587 (728)
|||.++|+|+|||+||+.+..++||++||+||||..|||+||..||+||+|++++|||++||+.|++||-|.++|+||+|
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEE
Q 004826 588 VVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSI 667 (728)
Q Consensus 588 ~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvI 667 (728)
.|||||.+ ||||||||+||||+++|+|.|++|||||||||..||+.||.+|.++..+||.|
T Consensus 667 ~VGERGLk-------------------LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtI 727 (790)
T KOG0056|consen 667 RVGERGLK-------------------LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTI 727 (790)
T ss_pred hhhhcccc-------------------cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceE
Confidence 99999999 99999999999999999999999999999999999999999999999999999
Q ss_pred EeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhc-cchHHHHHHhhhc
Q 004826 668 FIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQQNN 715 (728)
Q Consensus 668 vIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~l~~~q~~ 715 (728)
+|||||||+-+||.|+|+++|+|||.|+|+||+++ +|.|++||+.|+.
T Consensus 728 VvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 728 VVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMWQAQQA 776 (790)
T ss_pred EEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999998 8999999977644
No 5
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.2e-106 Score=945.38 Aligned_cols=573 Identities=31% Similarity=0.421 Sum_probs=484.9
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 004826 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (728)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (728)
..+.+++++.+ |+ ++.++++.+..++......+..+++..++..+.....+. +......+ ..+++++
T Consensus 650 ~s~~~i~k~~~----pe-~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~--~~~~~~~~------al~f~~l 716 (1228)
T KOG0055|consen 650 VSFWRIFKLNK----PE-WPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDE--LKREVRAW------ALIFLGL 716 (1228)
T ss_pred ccHHHHHHhcc----ch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHH--HHHHHHHH------HHHHHHH
Confidence 34667777776 44 444555555555444444445566677776654322111 11111111 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004826 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS-RETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (728)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~-~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (728)
++ +..++.+++.++|..+++++..++|.++|+++++++.+|||+ +++|.|.+|+..|...++..+..-+..++..+
T Consensus 717 ~~---~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~ 793 (1228)
T KOG0055|consen 717 GI---VSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNI 793 (1228)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 22 234677899999999999999999999999999999999985 23499999999999999888777766666665
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 004826 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (728)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~ 344 (728)
..+ ++..++.+.++|.++++.+...|++.+..+...++.+...++..++..+.+....|.+.||+||++|+.|+++.+.
T Consensus 794 ~~~-~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~ 872 (1228)
T KOG0055|consen 794 AAV-IIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMEL 872 (1228)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Confidence 443 3344566778899999988888888777776667777777777777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (728)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~ 424 (728)
|.+..++..+...+...+.++...+.+.+..+..++.+++|++++.+|.+++.+++-....+..-...+.+......++.
T Consensus 873 y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ 952 (1228)
T KOG0055|consen 873 YKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDIS 952 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHH
Confidence 99999999999999888888877777777777888899999999999999999988777666666667777888889999
Q ss_pred HHHHHHHHHHHHhcccccccCCC-CCCCCCCCCceEEEEEEEEEec--CCceeeeeeeEEEeCCcEEEEECCCCccHHHH
Q 004826 425 QSLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTI 501 (728)
Q Consensus 425 ~a~~s~~rl~~ll~~~~~~~~~~-~~~~~~~~~g~I~f~nVsF~Y~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL 501 (728)
++..++.+++++++++|.++.++ .....+...|+|+|+||+|+|| |+.+||+|+||+|++||++||||||||||||+
T Consensus 953 ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTv 1032 (1228)
T KOG0055|consen 953 KAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTV 1032 (1228)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHH
Confidence 99999999999999998765543 2212333568999999999999 56689999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhC
Q 004826 502 LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (728)
Q Consensus 502 ~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~L 581 (728)
+.||.|||||++|.|.|||+|++++++++||++||.|+|||.||++||||||+||.++++++||.+|||.|++|+||.+|
T Consensus 1033 I~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sL 1112 (1228)
T KOG0055|consen 1033 ISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSL 1112 (1228)
T ss_pred HHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999996669999999999999999999999
Q ss_pred CCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc
Q 004826 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 661 (728)
Q Consensus 582 P~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 661 (728)
|+||||.|||+|.+ ||||||||||||||++|||+||+|||||||||+++|+.||++|++.+
T Consensus 1113 P~GyDT~vGerG~Q-------------------LSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~ 1173 (1228)
T KOG0055|consen 1113 PQGYDTRVGERGVQ-------------------LSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM 1173 (1228)
T ss_pred cCcccCccCcccCc-------------------CCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh
Confidence 99999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 662 NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 662 ~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
.|||+|+||||||||++||.|+|+++|+|+|+|||+||++++|.|++|+..|.
T Consensus 1174 ~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1174 EGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAKRGIYFRLVQLQS 1226 (1228)
T ss_pred cCCcEEEEecchhhhhcCCEEEEEECCEEEecccHHHHHhCCCchHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999885
No 6
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-105 Score=839.55 Aligned_cols=494 Identities=56% Similarity=0.886 Sum_probs=473.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 199 RTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKF 278 (728)
Q Consensus 199 ~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 278 (728)
|..++..+++...+.+.-+.|.|++++++.|+.++.+|.+.+.++++.+.++.++...+.+++|.++.+.++++++++.+
T Consensus 2 r~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 2 RDRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred chHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45567788888889999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Q 004826 279 GAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALK 358 (728)
Q Consensus 279 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~ 358 (728)
+|+++.+.++.+.+|.++.....-|+..+++.++++.++.++...+++-|.++||.|+.|+.+.++|++..+.|.+...+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004826 359 TQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLE 438 (728)
Q Consensus 359 ~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~ 438 (728)
......+++.++..+++..+..++..+...+..|.||+|+++....++.++..|++.++..+.++.++..++|+.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 99999999999999999988888888999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCC-CCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEE
Q 004826 439 EKADIQDRDNAMPLN-LKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (728)
Q Consensus 439 ~~~~~~~~~~~~~~~-~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~ 517 (728)
.+.+..+.+..++++ ...|.|.|+||+|.|.+.+|+|+++||++++|+++||||+||+||||+.+||.||||+++|+|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 988877665555555 4457899999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccc
Q 004826 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGR 597 (728)
Q Consensus 518 idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~ 597 (728)
+||+|++++..+++|+.||+||||..|||+||..||.||+|++++||++.|++.|++|+||++||+||||.|||+|.+
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk-- 399 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK-- 399 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM 677 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~ 677 (728)
||||||||+||||++||+||||+|||||||||+.||+.||.+|++..+|+|+++||||||||-
T Consensus 400 -----------------lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~ 462 (497)
T COG5265 400 -----------------LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTII 462 (497)
T ss_pred -----------------ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCeEEEEeCCEEEEEcChHHHhhccchHHHHHH
Q 004826 678 QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 678 ~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
+||+|+||++|+|+|.|+|+||++++|.|++||.
T Consensus 463 ~adeiivl~~g~i~erg~h~~ll~~~g~ya~mw~ 496 (497)
T COG5265 463 DADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496 (497)
T ss_pred CCceEEEeeCCEEEecCcHHHHHHcCChHHHHhc
Confidence 9999999999999999999999999999999996
No 7
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=1.1e-101 Score=918.29 Aligned_cols=604 Identities=25% Similarity=0.362 Sum_probs=501.5
Q ss_pred CccCceeeccCC--CCcccee----cccccCC-----CCccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHH
Q 004826 56 RFSPITSFLSDS--ASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFR 124 (728)
Q Consensus 56 ~~~~~~~~~~~~--~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 124 (728)
+.+++++++.|| +.|++.+ |++.|+| +|+++|.+. . .....+++++++++ +++
T Consensus 92 ~~~~~~~~i~dP~~~~g~~~~~~~ef~~~~~g~~l~~~~~~~~~~~----~-------~~~~~~~~~~~~~~-----~~~ 155 (708)
T TIGR01193 92 GVTKNHLIIADPDPTVGITKISKEDFYEEWTGIAIFISPTPEYKPI----K-------EKENSLLKFIPLIT-----RQK 155 (708)
T ss_pred EEeCCEEEEEcCCcccCCEEecHHHHHhhCCCEEEEEEeccccccc----c-------cccchHHHHHHHHH-----HHH
Confidence 356789999999 8999888 8899999 787777210 0 01123556667765 446
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (728)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (728)
+.++..+++.++..++.++.|++++.++|.+...... ..+..+. ..+++. .++..++.+++.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~-------~~l~~~~----~~~~~~---~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 156 KLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM-------GTLGIIS----IGLIIA---YIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh-------HHHHHHH----HHHHHH---HHHHHHHHHHHHHHHH
Confidence 6666677777778888999999999999987532110 0111111 111111 1123467788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004826 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (728)
Q Consensus 205 ~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~ 284 (728)
+++.++..++|.++|+|++++|+.||+++++|++.++++ +.+.+..++.......+..++.+++ .+++++.++|++++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~l 299 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVI-VGLFLVRQNMLLFL 299 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999998 5555555544433333333332222 22334556788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (728)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (728)
++++.+++++++...+.+..++..++..+..++..+.+.|.+.|+++||+|+.|+.+.++|++..+++.+...+..+...
T Consensus 300 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 300 LSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777776666666677777777788888999999999999999999999999999999988888887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 004826 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (728)
Q Consensus 365 ~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~ 444 (728)
....+..++..+...+++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+.+|+.++++.+++.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 55555555544555667778999999999999999999999999999999999999999999999999999998776543
Q ss_pred CCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 004826 445 DRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (728)
Q Consensus 445 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (728)
+.....+.+...+.|+|+||+|+|++++++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 460 ~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 539 (708)
T TIGR01193 460 NKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLK 539 (708)
T ss_pred ccccccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHH
Confidence 22111112223468999999999986678999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcCCCCCCcccHHHHHHcC-CCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 525 ~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g-~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+++.+++|++|+||||||+||+|||+|||++| +|++++|++++||+.|+++|+|++||+||||+|||+|.+
T Consensus 540 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~-------- 611 (708)
T TIGR01193 540 DIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS-------- 611 (708)
T ss_pred HcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC--------
Confidence 99999999999999999999999999999999 588999999999999999999999999999999999988
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 683 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~Ii 683 (728)
|||||||||+||||++++|+|||||||||+||++||+.|+++|++. +++|+|+||||+++++.||+|+
T Consensus 612 -----------LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~ 679 (708)
T TIGR01193 612 -----------ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKII 679 (708)
T ss_pred -----------CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEE
Confidence 9999999999999999999999999999999999999999999985 7899999999999999999999
Q ss_pred EEeCCEEEEEcChHHHhhccchHHHHHH
Q 004826 684 VLENGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
|||+|+|+|.|+|+||++++|.|++||+
T Consensus 680 ~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 680 VLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred EEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 9999999999999999999999999985
No 8
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=4.1e-101 Score=892.18 Aligned_cols=563 Identities=35% Similarity=0.539 Sum_probs=479.6
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004826 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (728)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (728)
++.++++.+ ++ .+.++.++.++..++.+..|++++.++|.+.. ... .........+++.
T Consensus 4 ~~~l~~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~------~~~~~~~~~~~~~----- 62 (567)
T COG1132 4 LRRLLKYLK------YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA---DLG------ELLELLLLLLLLA----- 62 (567)
T ss_pred HHHHHHHHH------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hHH------HHHHHHHHHHHHH-----
Confidence 445555543 35 66777777777888999999999999998751 000 0110010001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004826 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (728)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (728)
.+..++.+...++..+++.++..++|.++|+|++++|+.+|++.++|++.+++++|.+.++.++......+...++.+
T Consensus 63 --~~~~v~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~ 140 (567)
T COG1132 63 --LLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLL 140 (567)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHH
Confidence 122345666677777888999999999999999999999999999999999999999988888766533333233222
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 004826 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (728)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~ 347 (728)
+ ...++++..+|.++++.++..+++.+....+.+..++..+..++..++.++.+.|.++|+++||+|+.|+.+.++|++
T Consensus 141 ~-~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~ 219 (567)
T COG1132 141 I-GSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEE 219 (567)
T ss_pred H-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHH
Confidence 2 223344556677777777766666666555555446667777778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (728)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~ 427 (728)
..+++.+...+..+..+...++...+..+....++++|.+.+.+|.+++|++++|+.+..++..|+..+...+..++.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 299 (567)
T COG1132 220 ANEELRRANLRASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRAS 299 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888777777777777777777778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 428 ~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
.+.+|++++++.+++..+.... .....++|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||++||+|
T Consensus 300 ~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r 377 (567)
T COG1132 300 AAAERLFELLDEEPEVEDPPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLR 377 (567)
T ss_pred HHHHHHHHHHcCCccccCCCCC--CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 9999999999987765443222 22234689999999999877899999999999999999999999999999999999
Q ss_pred CCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccc
Q 004826 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (728)
Q Consensus 508 ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT 587 (728)
||+|++|+|++||+||++++.++||++|++|||||+||+|||+|||+||+|+++|||+++||+.|++||||+++|+||||
T Consensus 378 ~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt 457 (567)
T COG1132 378 LYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDT 457 (567)
T ss_pred cCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEE
Q 004826 588 VVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSI 667 (728)
Q Consensus 588 ~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvI 667 (728)
+|||+|.+ ||||||||||||||+++||||||||||||+||++||+.|+++++++.++||+|
T Consensus 458 ~vge~G~~-------------------LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~i 518 (567)
T COG1132 458 IVGERGVN-------------------LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTL 518 (567)
T ss_pred eecCCCcc-------------------CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEE
Confidence 99999988 99999999999999999999999999999999999999999999988999999
Q ss_pred EeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhc
Q 004826 668 FIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 715 (728)
Q Consensus 668 vIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 715 (728)
+||||++|+++||+|+|||+|+|+|+|+|+||++++|.|++||..|..
T Consensus 519 iIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 519 IIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAKGGLYARLYQAQGG 566 (567)
T ss_pred EEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998854
No 9
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=5.3e-101 Score=895.39 Aligned_cols=570 Identities=21% Similarity=0.281 Sum_probs=468.8
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 004826 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (728)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (728)
.++++++|++ ++++.+++++++.++..++.+..|++++.++|.+.....+. ..+... ++.++++.
T Consensus 9 ~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~------~~~~~~----~~~~~~~~ 73 (588)
T PRK11174 9 LTRWLKQQSK-----PAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPR------EALLPP----FILLILLF 73 (588)
T ss_pred hhHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch------hHHHHH----HHHHHHHH
Confidence 3567788876 56777788888888888999999999999999764211110 011111 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004826 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (728)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (728)
++..++.+++.++..+++.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.++.++...+..++..++.
T Consensus 74 ---~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~ 150 (588)
T PRK11174 74 ---VLRALLAWLRERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLV 150 (588)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12345678888999999999999999999999999999999999999999999999999888776555555555443
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHH
Q 004826 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (728)
Q Consensus 267 ~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~ 346 (728)
.++. .++++.++|.+++++++.+++.+++...+.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|+
T Consensus 151 ~~~~-~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 229 (588)
T PRK11174 151 PLLI-LIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIR 229 (588)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHH
Confidence 3332 234455678787777766666666555555666666666777778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH---------HHHHHHHHHHHHHHHHHH
Q 004826 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDL---------VMVNGLLFQLSLPLNFLG 417 (728)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l---------~a~~~~~~~l~~pl~~l~ 417 (728)
+..+++.+...+..+..........++..+...++++++++.+ .|.+|+|++ ++++.+...+..|+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~ 308 (588)
T PRK11174 230 SASEDFRQRTMEVLRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLG 308 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999998888777666555555444443333333334444443 478888864 233356678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCcc
Q 004826 418 SVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSG 497 (728)
Q Consensus 418 ~~~~~~~~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSG 497 (728)
..+..++++.++++|+.++++.+++..+...........+.|+|+||+|.|++++++|+|+||+|+|||++||||+||||
T Consensus 309 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsG 388 (588)
T PRK11174 309 TFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAG 388 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccCCCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCC
Confidence 99999999999999999999876532211111111112357999999998876788999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHH
Q 004826 498 KSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDT 577 (728)
Q Consensus 498 KSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~ 577 (728)
||||++||+|+| |++|+|++||+|+++++.+++|++|+||||||+||+|||+|||+||+|+++|||+++||+.|+++||
T Consensus 389 KSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~ 467 (588)
T PRK11174 389 KTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEF 467 (588)
T ss_pred HHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHH
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 004826 578 IMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL 657 (728)
Q Consensus 578 I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L 657 (728)
|++||+||||.|||+|.+ |||||||||+|||||++||+||||||||||||++||+.|+++|
T Consensus 468 i~~lp~G~dT~vge~G~~-------------------LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l 528 (588)
T PRK11174 468 LPLLPQGLDTPIGDQAAG-------------------LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL 528 (588)
T ss_pred HHhcccccccccccCCCC-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 999999999999999988 9999999999999999999999999999999999999999999
Q ss_pred HHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 658 KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 658 ~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
+++.+++|+|+||||++++++||+|+|||+|+|+|+|+|+||++++|.|+++|..|.++
T Consensus 529 ~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 529 NAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred HHHhCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 99989999999999999999999999999999999999999999999999999988654
No 10
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=4.2e-101 Score=914.14 Aligned_cols=602 Identities=25% Similarity=0.342 Sum_probs=501.5
Q ss_pred CccCceeeccCCCCcccee----cccccCC-----CCccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHHHH
Q 004826 56 RFSPITSFLSDSASSRSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRLR 126 (728)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 126 (728)
+.+++++++.||+.|++.+ |+..|+| +|+++|.+ +......++.++++++ +++..
T Consensus 92 ~~~~~~~~i~dP~~g~~~~~~~e~~~~~~g~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~l~-----~~~~~ 155 (710)
T TIGR03796 92 GFRGGRVYLNDPALGPRTVSLEEFDESFTGVVLTFEPGPEFQK-----------GGRKPSLLRALWRRLR-----GSRGA 155 (710)
T ss_pred EEeCCEEEEECCCCCCEEccHHHHHhhCCCeEEEEEECccccc-----------cCcCcccHHHHHHHHH-----HHHHH
Confidence 4678899999999999987 8899999 78887721 1111134556666665 34555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (728)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (728)
+...+++.++..++.++.|++++.++|.+...... ..+..+. ..+++ +.++..++.+++.++..++
T Consensus 156 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-------~~l~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~ 221 (710)
T TIGR03796 156 LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ-------DWLRPLL----LGMGL---TALLQGVLTWLQLYYLRRL 221 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-------hHHHHHH----HHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 66666777777888899999999999987632211 1111111 11111 1123346788999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 004826 207 ALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWIT 286 (728)
Q Consensus 207 ~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~ 286 (728)
+.++..++|.++|+|++++|+++|+++++|++.++++++ ..+..++...+..++..++.+++. .++++.++|++++++
T Consensus 222 ~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li~ 299 (710)
T TIGR03796 222 QIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFY-ALLMLLYDPVLTLIG 299 (710)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999877 456655544444444333333322 234455778888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 287 SLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFL 366 (728)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (728)
++.+++++++...+.+...+..++..+..++..+.+.|.+.|+++||+++.|+.+.++|++...++.+...+..+.....
T Consensus 300 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (710)
T TIGR03796 300 IAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQIL 379 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666666666666666666666777788899999999999999999999999999999988888888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCC
Q 004826 367 NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR 446 (728)
Q Consensus 367 ~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~~ 446 (728)
..+..++..+...+++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+++|+.++++.+++....
T Consensus 380 ~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~ 459 (710)
T TIGR03796 380 GVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLE 459 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence 66666666666667778899999999999999999999999999999999999999999999999999999876654322
Q ss_pred C------CCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 004826 447 D------NAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (728)
Q Consensus 447 ~------~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (728)
. ...+.+...+.|+|+||+|+|++ ++++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++|
T Consensus 460 ~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 539 (710)
T TIGR03796 460 EEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539 (710)
T ss_pred cccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 1 00110222468999999999985 4689999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchh
Q 004826 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSL 599 (728)
Q Consensus 520 G~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~ 599 (728)
|+|+++++.+++|++|+||||||+||+|||+|||++++|+++++++++||+.++++++|++||+||||++||+|.+
T Consensus 540 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~---- 615 (710)
T TIGR03796 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGAN---- 615 (710)
T ss_pred CEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhc
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~a 679 (728)
|||||||||+|||||+++|+||||||||||||++||+.|+++|++ .++|+|+||||++++++|
T Consensus 616 ---------------LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~ 678 (710)
T TIGR03796 616 ---------------LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDC 678 (710)
T ss_pred ---------------CCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhC
Confidence 999999999999999999999999999999999999999999987 589999999999999999
Q ss_pred CeEEEEeCCEEEEEcChHHHhhccchHHHHH
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
|+|+|||+|+|+|+|+|+||++++|.|++||
T Consensus 679 D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 679 DEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred CEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 9999999999999999999999999999997
No 11
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.2e-100 Score=899.91 Aligned_cols=597 Identities=26% Similarity=0.342 Sum_probs=491.7
Q ss_pred CccCceeeccCCCCccc-ee----cccccCC-----CCccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHHH
Q 004826 56 RFSPITSFLSDSASSRS-IL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRL 125 (728)
Q Consensus 56 ~~~~~~~~~~~~~~~~~-~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 125 (728)
+.+++++++.||+.|++ .+ |+.. +| +|+ |. . ++ ..++.++++.+ +++++
T Consensus 78 ~~~~~~~~i~dP~~g~~~~~~~~e~~~~-~g~~~~~~~~--~~----~-----~~-----~~~~~~~~~~~----~~~~~ 136 (686)
T TIGR03797 78 PVSRGGYEIFDPATGTRRRVDAAMAATL-APEAYMFYRP--LP----D-----KA-----LGLRDLLRFAL----RGARR 136 (686)
T ss_pred EEcCCEEEEECCCCCCCcccCHHHHHhc-CCEEEEEecC--Cc----c-----cc-----ccHHHHHHHHH----hhHHH
Confidence 46788999999999997 55 5555 55 333 41 0 00 11333444422 13456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 126 RVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSK 205 (728)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (728)
.++..+++.++..++.++.|++++.++|.+...... ..+..+ ++.+++ +.++..++.+++.++..+
T Consensus 137 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~-------~~l~~~----~~~~~~---~~~~~~~~~~~~~~~~~~ 202 (686)
T TIGR03797 137 DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR-------SLLVQI----ALALLA---AAVGAAAFQLAQSLAVLR 202 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh-------hHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 667777777788899999999999999987632111 111111 111111 112234677889999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004826 206 VALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWI 285 (728)
Q Consensus 206 ~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i 285 (728)
++.++..++|.++|+|++++|+.||+++++|++.++++ +.+.++.++...+...+..++..+ ++.++++.++|+++++
T Consensus 203 ~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~l~li 280 (686)
T TIGR03797 203 LETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFAL-LNLGLMFYYSWKLALV 280 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887 456666555443333333332222 2333445567888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 286 TSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365 (728)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (728)
+++++++++++.....+...+..++..+..++.++.+.|.+.|+++||+++.|+++.++|++..+++.+...+..+....
T Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (686)
T TIGR03797 281 AVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENL 360 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666666655666656666666677778889999999999999999999999999999999999888888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 004826 366 LNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQD 445 (728)
Q Consensus 366 ~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~ 445 (728)
...+..++..+...+++++|++++.+|.+|+|+++++.++...+..|+..+...+.+++++..+++|+.++++.+++..+
T Consensus 361 ~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 440 (686)
T TIGR03797 361 LTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDE 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 66666655556666777889999999999999999999999999999999999999999999999999999987665332
Q ss_pred CCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 004826 446 RDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (728)
Q Consensus 446 ~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (728)
.. .. .....+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|++
T Consensus 441 ~~-~~-~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~ 518 (686)
T TIGR03797 441 AK-TD-PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLA 518 (686)
T ss_pred Cc-CC-CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcC
Confidence 11 11 1112468999999999974 568999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 525 ~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
+++++++|++||||||||+||+|||+|||++|+| +++|++++||+.|+++++|++||+||||++||+|.+
T Consensus 519 ~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~--------- 588 (686)
T TIGR03797 519 GLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT--------- 588 (686)
T ss_pred cCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC---------
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999988
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIV 684 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiV 684 (728)
|||||||||+|||||++||+|||||||||+||++||+.|+++|+++ ++|+|+||||+++++.||+|+|
T Consensus 589 ----------LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iiv 656 (686)
T TIGR03797 589 ----------LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYV 656 (686)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999999999986 6899999999999999999999
Q ss_pred EeCCEEEEEcChHHHhhccchHHHHHHhh
Q 004826 685 LENGKVIEQGSHDDLLTKAGRYAQLWGQQ 713 (728)
Q Consensus 685 ld~G~Ive~Gth~eLl~~~g~Y~~l~~~q 713 (728)
||+|+|+|+|+|+||++++|.|++||+.|
T Consensus 657 l~~G~iv~~G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 657 LDAGRVVQQGTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred EECCEEEEECCHHHHHhCCcHHHHHHHhc
Confidence 99999999999999999999999999876
No 12
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.3e-99 Score=894.36 Aligned_cols=598 Identities=24% Similarity=0.327 Sum_probs=494.4
Q ss_pred CccCce-eeccCCCCc--ccee----cccccCC-----CCccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhH
Q 004826 56 RFSPIT-SFLSDSASS--RSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEF 123 (728)
Q Consensus 56 ~~~~~~-~~~~~~~~~--~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 123 (728)
+.++++ +++.||+.| ++.+ |+..|+| +|.++|.... . +.+ +...+++++++++ ++
T Consensus 79 ~~~~~~~~~i~DP~~g~~~~~~~~~e~~~~~~g~~l~~~~~~~~~~~~---~-~~~----~~~~~~~~~~~~~-----~~ 145 (694)
T TIGR03375 79 GIDEDGKARVLLPETGDGEQELSLDALEALYSGYAIFVRPQFRFDARA---D-ELI----SPRPKHWFWSTLK-----ES 145 (694)
T ss_pred EEcCCCcEEEEccCCCCCceEecHHHHHhhcCCeEEEEeccccccccc---c-ccc----ccccchHHHHHHH-----HH
Confidence 356676 999999999 8877 7888888 6777772110 0 000 1123445666665 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (728)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (728)
+..+...+++.++..++.++.|++++.++|.+...... ..+..+ +..++.. .++..++.+++.++.
T Consensus 146 ~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~-------~~l~~~----~~~~~~~---~~~~~~~~~~~~~~~ 211 (694)
T TIGR03375 146 WPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF-------ETLWVL----AIGVALA---IVFDFVLKTLRSYFL 211 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH-------hHHHHH----HHHHHHH---HHHHHHHHHHHHHHH
Confidence 66666677777778888999999999999987532111 111111 1111111 112346788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004826 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (728)
Q Consensus 204 ~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (728)
.+++.++..++|.++|+|++++|+.| +++++|++.+++ +|.+.++.++.......+..++.+++.+ ++++.++|.++
T Consensus 212 ~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~ 288 (694)
T TIGR03375 212 DVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFL-LVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHhHHH
Confidence 99999999999999999999999998 788999999888 5677777665544333333333333222 33455678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (728)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (728)
+++++.+++++++...+.+..++..++..+..++..+.+.|.+.|+++||+|+.|+.+.++|++..+++.+...+..+..
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777777777776666666666677777788888899999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 004826 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (728)
Q Consensus 364 ~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~ 443 (728)
.....+..++..+...+++++|++++.+|.+|+|++++++.+...+..|+..+...+.+++++..+++|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 77666666655566666778899999999999999999999999999999999999999999999999999999887653
Q ss_pred cCCCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEe
Q 004826 444 QDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (728)
Q Consensus 444 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d 522 (728)
++.....+.+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 449 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~ 528 (694)
T TIGR03375 449 PEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVD 528 (694)
T ss_pred CCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEE
Confidence 322111111223468999999999985 4689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 523 ICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 523 i~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
+++++++++|++|+|||||++||+|||+|||++++|++++||+++|++.++++|+|++||+||||.+||+|.+
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~------- 601 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRS------- 601 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeE
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~I 682 (728)
|||||||||+|||||+++|+|||||||||+||++||+.|+++|+++.+++|+|+||||+++++.||+|
T Consensus 602 ------------LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~i 669 (694)
T TIGR03375 602 ------------LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRI 669 (694)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
+|||+|+|+|+|+|+||+++
T Consensus 670 ivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 670 IVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999999875
No 13
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.8e-97 Score=876.52 Aligned_cols=605 Identities=28% Similarity=0.422 Sum_probs=501.2
Q ss_pred CccCceeeccCCCCc-ccee----cccccCC-----CCccccccccccCCCChhhhhhhHHHHHHHHHHHhcccchhHHH
Q 004826 56 RFSPITSFLSDSASS-RSIL----FSTSTST-----KDKKDFLNKPVTKSNAPEQQIADMKIFRTLASYLWMKDNFEFRL 125 (728)
Q Consensus 56 ~~~~~~~~~~~~~~~-~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 125 (728)
+++++++++.||+.| ++.+ |+..|+| +|++ +. ++ + +...+++++++++ +++.
T Consensus 78 ~~~~~~~~i~Dp~~g~~~~i~~~e~~~~~~g~~l~~~~~~-~~----~~----~----~~~~~~~~~~~~~-----~~~~ 139 (694)
T TIGR01846 78 KLTANGVTIYDPPGDAPEVLSREVLEALWSGTVILLATRS-VA----GK----A----LKFGFSWFIPAII-----RYRK 139 (694)
T ss_pred EEcCCEEEEEcCCCCCceeeCHHHHHhhCCCeEEEEecCc-cc----cc----c----ccCcHHHHHHHHH-----HHHH
Confidence 467889999999998 6666 8888888 5554 41 10 0 0122445666665 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 126 RVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSK 205 (728)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 205 (728)
.+...+++.++..++.++.|++++.++|.+...... ..+..+ ++.++++ .++..++.+++.++..+
T Consensus 140 ~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~-------~~l~~l----~~~~~~~---~~~~~~~~~l~~~~~~~ 205 (694)
T TIGR01846 140 QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL-------STLSVL----ALAMLAV---AIFEPALGGLRTYLFAH 205 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh-------hHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 566667777777888899999999999987532111 111111 1111111 12234678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 004826 206 VALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWI 285 (728)
Q Consensus 206 ~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i 285 (728)
++.++..++|.++|+|++++|+.||+++++|++.++++ |.+.++.++.......+..++..++. .++++.++|.++++
T Consensus 206 ~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl~-d~~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~li 283 (694)
T TIGR01846 206 LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVR-ELEQIRNFLTGSALTVVLDLLFVVVF-LAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999884 67777766544333333333222222 23445567888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 286 TSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAF 365 (728)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (728)
+++.+++++++...+.+..++..++..+..++.++.+.|.+.|+++||+++.|+.+.++|++..+++.+...+..+....
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNI 363 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666666655555555556667778889999999999999999999999999999999999888888877776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 004826 366 LNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQD 445 (728)
Q Consensus 366 ~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~ 445 (728)
...+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+...+.+++++..+++|+.++++.+++...
T Consensus 364 ~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~ 443 (694)
T TIGR01846 364 AGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRS 443 (694)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC
Confidence 66666666666666777889999999999999999999999999999999999999999999999999999987765332
Q ss_pred CCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 004826 446 RDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (728)
Q Consensus 446 ~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (728)
.. ..+.+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|++
T Consensus 444 ~~-~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 444 AG-LAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred CC-CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 11 1112222468999999999975 467999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 525 ~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
+++.+++|++|+|||||+++|++||+|||++++|+++++++++||+.++++++|++||+||||.+||+|.+
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~--------- 593 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGAN--------- 593 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIV 684 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiV 684 (728)
|||||||||+|||||+++|+|||||||||+||++||+.+.+.|+++.+++|+|+||||+++++.||+|+|
T Consensus 594 ----------LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~ 663 (694)
T TIGR01846 594 ----------LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIV 663 (694)
T ss_pred ----------CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 685 LENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 685 ld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
|++|+|+|+|+|+||++++|.|++||+.|.
T Consensus 664 l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 664 LEKGQIAESGRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred EeCCEEEEeCCHHHHHHcCChHHHHHHhhc
Confidence 999999999999999999999999998763
No 14
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1.1e-96 Score=873.67 Aligned_cols=563 Identities=27% Similarity=0.388 Sum_probs=471.6
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 004826 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (728)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (728)
..+++++++++ +.++.++.++++.++.+++.+..|++++.++|.+..... . ..+...+. ++.
T Consensus 147 ~~~~~l~~~~~-----~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~-~------~~~~~~~~----~~~-- 208 (711)
T TIGR00958 147 DLLFRLLGLSG-----RDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG-P------PALASAIF----FMC-- 208 (711)
T ss_pred hHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-H------HHHHHHHH----HHH--
Confidence 45667778876 446667777778888889999999999999998753211 1 01111110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004826 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (728)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (728)
+..++..++.+++.+++..++.++..++|.++|++++++|+.||++.++|++.+++++|.+.++..+...+..++..++
T Consensus 209 -~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~ 287 (711)
T TIGR00958 209 -LLSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287 (711)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111234567788888999999999999999999999999999999999999999999988888776655555555544
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 004826 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (728)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~ 345 (728)
.+++.+ ++++.++|.+++++++.+++.+++...+.+..++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|
T Consensus 288 ~~i~~~-~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~ 366 (711)
T TIGR00958 288 MLLGLL-GFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRF 366 (711)
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHH
Confidence 333332 3344567777777766666666666666666666666777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (728)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~ 425 (728)
++..+++.+...+.....+.......++..+...+++++|++++.+|.+|+|++++++.|..++..|+..++..+.++++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~ 446 (711)
T TIGR00958 367 KEALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQ 446 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887776665555444444444445555667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHH
Q 004826 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (728)
Q Consensus 426 a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~ 503 (728)
+..+.+|++++++.+++.++.....+ ....+.|+|+||+|+||+ ++++|+|+||+|+|||++|||||||||||||++
T Consensus 447 ~~~a~~ri~~~l~~~~~~~~~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~ 525 (711)
T TIGR00958 447 AVGASEKVFEYLDRKPNIPLTGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAA 525 (711)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999988765432221111 123467999999999984 468999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCC
Q 004826 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (728)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~ 583 (728)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||||||+||+|+++||++++|++.|++++||++||+
T Consensus 526 lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~ 605 (711)
T TIGR00958 526 LLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPN 605 (711)
T ss_pred HHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCC
Q 004826 584 KYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN 663 (728)
Q Consensus 584 G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~ 663 (728)
||||.+||+|.+ ||||||||||||||+++||+|||||||||+||++||+.|++ . ...++
T Consensus 606 GldT~ige~G~~-------------------LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~ 664 (711)
T TIGR00958 606 GYDTEVGEKGSQ-------------------LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRAS 664 (711)
T ss_pred ccCCcccCCCCc-------------------CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCC
Confidence 999999999988 99999999999999999999999999999999999999999 3 34578
Q ss_pred CeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHH
Q 004826 664 RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 664 ~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
+|+|+||||+++++.||+|+|||+|+|+|+|+|+||++++|.|++|+
T Consensus 665 ~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~~~~y~~lv 711 (711)
T TIGR00958 665 RTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHLV 711 (711)
T ss_pred CeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhCCCchHhcC
Confidence 99999999999999999999999999999999999999999999863
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.7e-96 Score=918.38 Aligned_cols=565 Identities=27% Similarity=0.372 Sum_probs=455.2
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004826 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (728)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (728)
+++++++++ ++++.+++++++.++..++..+.|++++.++|.+..... +......+.+ +++++++
T Consensus 813 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~l------~~~~~~i 877 (1466)
T PTZ00265 813 LRIVYREIF-----SYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN----LEANSNKYSL------YILVIAI 877 (1466)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----HHHHHHHHHH------HHHHHHH
Confidence 445566665 345556677767777778888899999999997642110 0000111111 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004826 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (728)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~--~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (728)
+..++.+++.++..++++++..++|.++|+|++++|+.||++ +++|++.+++++|.+.++..+...+..++..++
T Consensus 878 ---~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~ 954 (1466)
T PTZ00265 878 ---AMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIV 954 (1466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 224567788999999999999999999999999999999986 789999999999999888776665555555554
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-----------------HHHHHHHHHHHHHHHHc
Q 004826 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKF-RKA-----------------MNKADNDASTRAIDSLI 327 (728)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~e~l~ 327 (728)
.+++. +++++.++|.+++++++ +++++...+.+..+.. .++ .++..++.+..+.|.+.
T Consensus 955 ~~i~~-~~~~~~~~~~l~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~ 1030 (1466)
T PTZ00265 955 LFLVS-MVMSFYFCPIVAAVLTG---TYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFY 1030 (1466)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHh
Confidence 44332 23345566665554332 2222222222211111 111 12234556788999999
Q ss_pred hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Q 004826 328 NYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLF 407 (728)
Q Consensus 328 gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~ 407 (728)
|+++||+|+.|+++.++|++..+.+.+...+.....+....+..++..+..++++++|++++.+|.+|+|++++++.++.
T Consensus 1031 gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~ 1110 (1466)
T PTZ00265 1031 NMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFL 1110 (1466)
T ss_pred cHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999888877777776666666666555566677788999999999999999999887765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCC-CCCC---CCCCCceEEEEEEEEEecC--CceeeeeeeEE
Q 004826 408 QLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMP---LNLKGGSIQFDNVHFSYLT--ERKILDGVSFV 481 (728)
Q Consensus 408 ~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~~~-~~~~---~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~ 481 (728)
....|+..+...+.+++++.++++|++++++.+++++..+ .... .+...+.|+|+||+|+||+ +.+||+|+||+
T Consensus 1111 ~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~ 1190 (1466)
T PTZ00265 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFS 1190 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEE
Confidence 5566788899999999999999999999998866432111 1111 1123468999999999983 45899999999
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCCC--------------------------------------------------
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDT-------------------------------------------------- 511 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-------------------------------------------------- 511 (728)
|+|||+|||||+||||||||++||+|||+|
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDS 1270 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999
Q ss_pred ----CCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccc
Q 004826 512 ----HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (728)
Q Consensus 512 ----~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT 587 (728)
++|+|+|||+|+++++.++||++||||||||+||+|||||||+||+|++++|||++||+.|++||||.+||+||||
T Consensus 1271 ~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT 1350 (1466)
T PTZ00265 1271 TVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDT 1350 (1466)
T ss_pred ccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCe
Q 004826 588 VVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRT 665 (728)
Q Consensus 588 ~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~T 665 (728)
.|||+|.+ |||||||||||||||++||+||||||||||||++||+.|+++|+++. ++||
T Consensus 1351 ~VGe~G~~-------------------LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~T 1411 (1466)
T PTZ00265 1351 NVGPYGKS-------------------LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKT 1411 (1466)
T ss_pred ccCCCCCc-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCE
Confidence 99999988 99999999999999999999999999999999999999999999984 6999
Q ss_pred EEEeccCchHHhhcCeEEEEeC----CEEE-EEcChHHHhh-ccchHHHHHHhh
Q 004826 666 SIFIAHRLTTAMQCDEIIVLEN----GKVI-EQGSHDDLLT-KAGRYAQLWGQQ 713 (728)
Q Consensus 666 vIvIaHRLsti~~aD~IiVld~----G~Iv-e~Gth~eLl~-~~g~Y~~l~~~q 713 (728)
+|+||||++++++||+|+||++ |++| |+|||+||++ ++|.|++||+.|
T Consensus 1412 vIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1412 IITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred EEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhc
Confidence 9999999999999999999999 9955 9999999998 599999999876
No 16
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-95 Score=843.49 Aligned_cols=567 Identities=23% Similarity=0.320 Sum_probs=469.9
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004826 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (728)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (728)
+++++++++ ++++.+++++++.++..+..+..|+++++++|........ . ...+. ..+ ..+.++++.+
T Consensus 4 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~-~----~~~~~-~~~-~~~~~~~~~~ 71 (574)
T PRK11160 4 LLPFLKLYK-----RHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLA-G----LYSFN-YML-PAAGVRGAAI 71 (574)
T ss_pred hHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-c----hhhHH-HHh-HHHHHHHHHH
Confidence 334556665 4567777888888888889999999999999975321110 0 00000 000 0111112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004826 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (728)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (728)
+..++.++..++..+++.++..++|.++|+|++++|+.+|++.++|++.+++++|.+.++.++...+..++..++.+
T Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~ 148 (574)
T PRK11160 72 ---GRTAGRYGERLVSHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVI 148 (574)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23456778888999999999999999999999999999999999999999999999999888766655555555444
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHH
Q 004826 268 SMVSGILAYKFGAPFAWITSLSVVAYVVF-TLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (728)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~ 346 (728)
++.+ ++++.++|.+++++++.+++..++ .....+..++..++.++..++.++.+.|.++|+++||+|+.|+++.++|+
T Consensus 149 ~~~~-~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~ 227 (574)
T PRK11160 149 LVLT-IGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLE 227 (574)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHH
Confidence 3333 344556787777765555544332 23344444556666777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q 004826 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQ-LSLPLNFLGSVYRETVQ 425 (728)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~-l~~pl~~l~~~~~~~~~ 425 (728)
+..+++.+...+..+..+....+..++..+...+++++|++. .+|.+|+|.++++..|... ...|+..+...+..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~ 306 (574)
T PRK11160 228 QTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQ 306 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888777766666655555556666778777 4899999999999887655 45688889999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHH
Q 004826 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (728)
Q Consensus 426 a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~L 504 (728)
+.++++|+.++++.+++.+++....+ ....+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++
T Consensus 307 ~~~s~~ri~~ll~~~~~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~l 385 (574)
T PRK11160 307 VIASARRINEITEQKPEVTFPTTSTA-AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQL 385 (574)
T ss_pred HHHHHHHHHHHHhCCCCCCCCcccCC-CCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 99999999999988765332211111 1224679999999999864 689999999999999999999999999999999
Q ss_pred HhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCc
Q 004826 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (728)
Q Consensus 505 L~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G 584 (728)
|+|+|+|++|+|++||+|+++++.+++|++|+||||||+||++||+|||++++|+++||++++|++.+++++||++ |+|
T Consensus 386 l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~G 464 (574)
T PRK11160 386 LTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKG 464 (574)
T ss_pred HhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCC
Q 004826 585 YSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR 664 (728)
Q Consensus 585 ~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~ 664 (728)
|||+|||+|.+ |||||||||+||||+++||+|||||||||+||++||+.|+++|+++.+++
T Consensus 465 ldT~vge~g~~-------------------LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~ 525 (574)
T PRK11160 465 LNAWLGEGGRQ-------------------LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK 525 (574)
T ss_pred cCchhcCCCCC-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999988 99999999999999999999999999999999999999999999998899
Q ss_pred eEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHh
Q 004826 665 TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 712 (728)
Q Consensus 665 TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~ 712 (728)
|+|+||||++++++||+|+||++|+|+|.|+|+||++++|.|++||+.
T Consensus 526 tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 526 TVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQGRYYQLKQR 573 (574)
T ss_pred EEEEEecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhcCcHHHHHHhh
Confidence 999999999999999999999999999999999999999999999963
No 17
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=5.5e-98 Score=875.93 Aligned_cols=503 Identities=32% Similarity=0.459 Sum_probs=445.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (728)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (728)
+..+++..++.+.++|...++|.++++.+++++++|||.+.+|++..++++|.+.++..+..-+..++..+.++ +..++
T Consensus 86 ~~~~~q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~f-i~g~i 164 (1228)
T KOG0055|consen 86 ISGFIQVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATF-IAGFV 164 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 45678888999999999999999999999999999999999999999999999888877766555555444333 23345
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHH
Q 004826 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (728)
Q Consensus 274 l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~ 353 (728)
+.|...|.++++.+...|+..+....+.+...+...+.+++.++..+.+.|++.++|||.+|+-|+.+.++|.+.++...
T Consensus 165 i~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~ 244 (1228)
T KOG0055|consen 165 IGFYYGWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENAL 244 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHH
Confidence 56667889999888888887777777777777777777788888889999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSM 433 (728)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl 433 (728)
+...+...+.++......++.....+..+|+|+.++.++..+.|+++..+..+..-...+.+....+..+..+.+++.++
T Consensus 245 k~gi~~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I 324 (1228)
T KOG0055|consen 245 KFGIKKGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRI 324 (1228)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHH
Confidence 88888777777665555556666778888999999999999999887665444444455666677778889999999999
Q ss_pred HHHhcccccccCCC-CCCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 434 FQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 434 ~~ll~~~~~~~~~~-~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
++.++..|.++... .........|.|+|+||+|+||. +.++|+|+||+|++||+|||||+|||||||+++||.|||+
T Consensus 325 ~~~i~~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd 404 (1228)
T KOG0055|consen 325 FETIDRKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD 404 (1228)
T ss_pred HHHhcCCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 99999988765533 11122334689999999999994 4589999999999999999999999999999999999999
Q ss_pred CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhh
Q 004826 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (728)
Q Consensus 511 p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vg 590 (728)
|++|+|+|||.|+++++.++||++||+|.|||.||++||+|||+||+|++|++|+.+|||.|++|+||.+||+||||.||
T Consensus 405 P~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vg 484 (1228)
T KOG0055|consen 405 PTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVG 484 (1228)
T ss_pred CCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEec
Q 004826 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIA 670 (728)
Q Consensus 591 E~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIa 670 (728)
|+|.. |||||||||||||||++||+||+|||||||||+++|+.||++|++.++|||+|+||
T Consensus 485 e~g~q-------------------LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVa 545 (1228)
T KOG0055|consen 485 ERGVQ-------------------LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVA 545 (1228)
T ss_pred CCCCC-------------------CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 99988 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 671 HRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 671 HRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
||||||++||+|+||++|+|||.|+|+||++.+|.|++|++.|...
T Consensus 546 HRLStIrnaD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~lv~~Q~~~ 591 (1228)
T KOG0055|consen 546 HRLSTIRNADKIAVMEEGKIVEQGTHDELIALGGIYSSLVRLQELE 591 (1228)
T ss_pred eehhhhhccCEEEEEECCEEEEecCHHHHHhccchHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999998443
No 18
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.1e-94 Score=841.63 Aligned_cols=569 Identities=31% Similarity=0.425 Sum_probs=474.4
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 004826 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (728)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (728)
++.++.++++++ .+++.++.++++.++..+..++.|++++.++|.+.... .. ..+..+ ...+++
T Consensus 10 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~------~~~~~~----~~~~~~ 73 (582)
T PRK11176 10 WQTFRRLWPTIA-----PFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKA-DR------SVLKWM----PLVVIG 73 (582)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch------hHHHHH----HHHHHH
Confidence 444566777765 34566666666666777777888999999999765211 00 011100 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004826 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (728)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (728)
+.+ +..++.+++.++..+++.++..++|.++|+|+.++|..+|++.++|++.+++++|.+.+...+...+..++..+
T Consensus 74 ~~l---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T PRK11176 74 LMI---LRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22356677778888999999999999999999999999999999999999999888888776655555555555
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 004826 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (728)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~ 344 (728)
+.+++.++ +++.++|++++++++.+++..++.....++.++..++..+..++..+.+.|.+.|+++||+|+.|+.+.++
T Consensus 151 ~~~~~~~~-~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~ 229 (582)
T PRK11176 151 ASIIGLFI-MMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229 (582)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHH
Confidence 44433333 33446777777766666655555555555555666666677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (728)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~ 424 (728)
|++..+++.+...+..+.......+..++..+...+++++|++.+.+|.+|+|+++++.+++..+..|+..+...+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T PRK11176 230 FDKVSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888887777666666666556666667788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHH
Q 004826 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (728)
Q Consensus 425 ~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~ 503 (728)
++..+++|+.++++.+++.+.... ..++..+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||++
T Consensus 310 ~~~~~~~ri~~~~~~~~~~~~~~~--~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ 387 (582)
T PRK11176 310 RGMAACQTLFAILDLEQEKDEGKR--VIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHHHhcCCCcCCCCCc--CCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHH
Confidence 999999999999987654221111 11222357999999999985 478999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCC-CCHHHHHHHHHHhccHHHHHhCC
Q 004826 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTIMNFP 582 (728)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~-~sdeei~~A~~~a~l~~~I~~LP 582 (728)
+|+|+|+|++|+|++||+|+++++.+++|++|+|||||+++|+|||+|||++|+|+ ++|+++++|++.++++++|++||
T Consensus 388 ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp 467 (582)
T PRK11176 388 LLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_pred HHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999765 79999999999999999999999
Q ss_pred CcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC
Q 004826 583 AKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN 662 (728)
Q Consensus 583 ~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~ 662 (728)
+||||.+||+|.+ |||||||||+|||||+++|+||||||||||||++||+.|.++|.++.+
T Consensus 468 ~Gldt~ig~~g~~-------------------LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~ 528 (582)
T PRK11176 468 NGLDTVIGENGVL-------------------LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_pred cccCceeCCCCCc-------------------CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC
Confidence 9999999999988 999999999999999999999999999999999999999999999888
Q ss_pred CCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 663 NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 663 ~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
+||+|+||||+++++.||+|++||+|+|+|+|+|+||+++++.|++||..|.
T Consensus 529 ~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~~~~y~~l~~~~~ 580 (582)
T PRK11176 529 NRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYAQLHKMQF 580 (582)
T ss_pred CCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHHhCCChHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998774
No 19
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4.5e-94 Score=837.62 Aligned_cols=570 Identities=26% Similarity=0.366 Sum_probs=462.5
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 004826 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (728)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (728)
++.++++..|+. ++++.+++.+++.++..++.+..|++++.++|.+...... ... .++.. +++++
T Consensus 8 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-------~~~-~~~~~-~~~~~- 72 (592)
T PRK10790 8 WPTLKRLLAYGS-----PWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNL-------PLG-LVAGL-AAAYV- 72 (592)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-------chh-HHHHH-HHHHH-
Confidence 344555555554 4566666777777788888999999999999987532110 010 00100 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004826 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (728)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (728)
+..++..++.+++.++...++.++..++|.++|+|++++|+.+|+++++|++.+++++|.+.++.++...+..++..+
T Consensus 73 --~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~ 150 (592)
T PRK10790 73 --GLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSA 150 (592)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111223456788889999999999999999999999999999999999999999999999888877666555555554
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 004826 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (728)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~ 344 (728)
+.++. .+++++.++|+++++.++++++.+++.....++.++..++.++..++..+.+.|.+.|+++||+|+.|+.+.++
T Consensus 151 ~~~~~-~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~ 229 (592)
T PRK10790 151 ALIGA-MLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGER 229 (592)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHH
Confidence 43322 22334446777776666555555444444444445555555566677788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 345 YDEFLRRYEDAALKTQRSLAFL-NFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRET 423 (728)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~ 423 (728)
|.+..+++.+...+..+..+.. .....++..+...++++++++ +..|.+++|.++++..|...+..|+..++..+..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~ 308 (592)
T PRK10790 230 MGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSML 308 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777766665554432 222322222222223333333 67899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHH
Q 004826 424 VQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (728)
Q Consensus 424 ~~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~ 503 (728)
+++..+++|+.++++.+++.... . ..+...++|+|+||+|+|++++++|+|+||+|+|||++||||+||||||||++
T Consensus 309 ~~~~~s~~ri~~~l~~~~~~~~~-~--~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~ 385 (592)
T PRK10790 309 QQAVVAGERVFELMDGPRQQYGN-D--DRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLAS 385 (592)
T ss_pred HHHHHHHHHHHHHhcCCCccCCC-C--ccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 99999999999999876442111 1 11122357999999999986678999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCC
Q 004826 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (728)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~ 583 (728)
+|+|+|+|++|+|++||+|+++++++++|++|+||||||+||+|||+|||++|+ +++|+++++|++.++++++|++||+
T Consensus 386 lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~ 464 (592)
T PRK10790 386 LLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPD 464 (592)
T ss_pred HHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999998 6899999999999999999999999
Q ss_pred cccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCC
Q 004826 584 KYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN 663 (728)
Q Consensus 584 G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~ 663 (728)
||||.+||+|.+ |||||||||+|||||++||||||||||||+||++||+.|++.|+++.++
T Consensus 465 Gldt~i~e~g~~-------------------LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~ 525 (592)
T PRK10790 465 GLYTPLGEQGNN-------------------LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREH 525 (592)
T ss_pred cccccccCCCCC-------------------CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCC
Confidence 999999999988 9999999999999999999999999999999999999999999998889
Q ss_pred CeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 664 RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 664 ~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
||+|+||||+++++.||+|++||+|+|+|.|+|+||+++++.|++++..|...
T Consensus 526 ~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~~~~y~~l~~~~~~~ 578 (592)
T PRK10790 526 TTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYWQMYQLQLAG 578 (592)
T ss_pred CEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999988443
No 20
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-93 Score=780.32 Aligned_cols=503 Identities=28% Similarity=0.378 Sum_probs=451.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 192 ASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVS 271 (728)
Q Consensus 192 ~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 271 (728)
..++.+.+..+..+.+.++..++|.++++|+.++++.+-.+.++|+..+++.+..+.++.++...++..+..++.-.+ +
T Consensus 53 Ra~l~~~~~~~~~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~-i 131 (559)
T COG4988 53 RAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLL-I 131 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 356778888899999999999999999999999999999999999999999999999998887777766655543222 2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHH
Q 004826 272 GILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (728)
Q Consensus 272 ~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~ 351 (728)
.+.++.++|.-++++++.+|+.+++++.+....++..++..+....+++.+.|.++|+.|+|+|+..+...++..+..++
T Consensus 132 ~i~v~~~~w~aalIllit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~ 211 (559)
T COG4988 132 LIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSED 211 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHH
Confidence 23345567888888889999999998888887777777777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 352 YEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILS-GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDM 430 (728)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~-g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~ 430 (728)
+++..++.-+..-.....+.++..+.++.+.++.++..+. |.+|......++.+.-.++.|++.++..++.-+.+.++.
T Consensus 212 fR~~TM~vLriAflSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~ 291 (559)
T COG4988 212 FRKATMSVLRIAFLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAA 291 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 9999999888666666667777666666666666666677 899999999999999999999999999999999999999
Q ss_pred HHHHHHhcccccccCCCCC-CCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 431 KSMFQLLEEKADIQDRDNA-MPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 431 ~rl~~ll~~~~~~~~~~~~-~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+.++.+++.|++..+.... ...+....+|+++|++|.||+++++++|+||+++||+++||||+||||||||+++|+||+
T Consensus 292 d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~ 371 (559)
T COG4988 292 DKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL 371 (559)
T ss_pred HHHHHHhcCCCCCCCCccccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence 9999999988764433221 112222345667799999998779999999999999999999999999999999999999
Q ss_pred CCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchh
Q 004826 510 DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589 (728)
Q Consensus 510 ~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~v 589 (728)
+|++|+|++||+|+++++.++||+++++|||+|+||+|||||||++++|+++||++++|++.+++.||+.. |+|+||++
T Consensus 372 ~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~i 450 (559)
T COG4988 372 APTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVI 450 (559)
T ss_pred CCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred hccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEe
Q 004826 590 GERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFI 669 (728)
Q Consensus 590 gE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvI 669 (728)
||+|.+ |||||+||+++||||+++++++|||||||+||.|||+.|+++|.++.+++|+|+|
T Consensus 451 ge~G~~-------------------LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i 511 (559)
T COG4988 451 GEGGAG-------------------LSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI 511 (559)
T ss_pred ccCCCC-------------------CCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEE
Confidence 999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhc
Q 004826 670 AHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 715 (728)
Q Consensus 670 aHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 715 (728)
|||++.+++||+|+|||+|+++|+|+|+||++++|.|++|+.+|.+
T Consensus 512 tHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l~~~q~~ 557 (559)
T COG4988 512 THRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANLLKQQEG 557 (559)
T ss_pred EcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998865
No 21
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=7.2e-92 Score=818.21 Aligned_cols=567 Identities=32% Similarity=0.444 Sum_probs=464.1
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 004826 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (728)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (728)
+.+++++++++ +++..+.+.+++.++..++.+..|++++.++|.+.... . ... ++...+ +.
T Consensus 5 ~~~~~l~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~---~-----~~~--~~~~~~----~~ 65 (588)
T PRK13657 5 RLYARVLQYLG-----AEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG---D-----IFP--LLAAWA----GF 65 (588)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c-----HHH--HHHHHH----HH
Confidence 34556666665 45666677777777788889999999999999764311 0 010 010001 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004826 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (728)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (728)
.+. ..+..++..++..++..++...++.++|+|++++|+.+|++.++|++.+++++|.+.+...+...+..++..++
T Consensus 66 ~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~ 142 (588)
T PRK13657 66 GLF---NIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLV 142 (588)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11234445555566666777778889999999999999999999999999988888776555444444444433
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 004826 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (728)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~ 345 (728)
..+ +..++++.++|+++++++++++++.++.....+..++..++..+..++..+.+.|.+.|+++||.|+.++.+.++|
T Consensus 143 ~~~-~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~ 221 (588)
T PRK13657 143 ALV-VLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQAL 221 (588)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHH
Confidence 222 2223344566777776666655555555555555555566666677788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (728)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~ 425 (728)
.+..+++.+...+..+..........++..+...+++++|++++.+|.+|+|+++++..++..+..|+..+...+..+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~ 301 (588)
T PRK13657 222 RDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFM 301 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887777666665555555555555566677899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHH
Q 004826 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL 505 (728)
Q Consensus 426 a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL 505 (728)
+..+++|+.++++.+++.+......+.+...+.|+|+||+|+|++++++|+|+||+|+|||++||||+||||||||+|+|
T Consensus 302 ~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL 381 (588)
T PRK13657 302 AAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL 381 (588)
T ss_pred HHHHHHHHHHHhCCCcccCCCCCCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 99999999999887554322111111112235799999999998657899999999999999999999999999999999
Q ss_pred hcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcc
Q 004826 506 FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKY 585 (728)
Q Consensus 506 ~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~ 585 (728)
+|+|+|++|+|++||+|+++++.+++|++|+||||||+||+|||+|||++++|+++|+++++|++.++++++|.++|+|+
T Consensus 382 ~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gl 461 (588)
T PRK13657 382 QRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGY 461 (588)
T ss_pred hcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCe
Q 004826 586 STVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRT 665 (728)
Q Consensus 586 dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~T 665 (728)
||.+||+|.+ |||||||||+|||||+++|+|||||||||+||++||+.|++.|+++.+++|
T Consensus 462 dt~i~~~g~~-------------------LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~t 522 (588)
T PRK13657 462 DTVVGERGRQ-------------------LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRT 522 (588)
T ss_pred cchhcCCCCC-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCE
Confidence 9999999988 999999999999999999999999999999999999999999999888999
Q ss_pred EEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 666 SIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 666 vIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
+|+||||+++++.||+|++|++|+++|+|+|+||+++++.|++++..|.
T Consensus 523 vIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 523 TFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQG 571 (588)
T ss_pred EEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHHHHCCChHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998763
No 22
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.6e-91 Score=811.24 Aligned_cols=566 Identities=30% Similarity=0.429 Sum_probs=472.3
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 004826 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (728)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (728)
.++++++|++ ++++.++..+++.++..++.++.|++++.++|.+.... . ....++. . ++..
T Consensus 6 ~~~~l~~~l~-----~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~--~-------~~~~~~~----~-~~~~ 66 (585)
T TIGR01192 6 VYVRALSYLN-----VHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKS--D-------VLPTLAL----W-AGFG 66 (585)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--c-------HHHHHHH----H-HHHH
Confidence 4566777775 56777777888888888999999999999999764311 0 0000000 0 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004826 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (728)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (728)
+ +..+..+++.++..++..++..++|.++|+|++++|++||+++++|++.+++++|.+.+..++...+..++..++.
T Consensus 67 ~---~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~ 143 (585)
T TIGR01192 67 V---FNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVA 143 (585)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1223455666666677777888888899999999999999999999999999999888877665555555544443
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHH
Q 004826 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (728)
Q Consensus 267 ~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~ 346 (728)
++++ +++++.++|.+++++++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|+
T Consensus 144 ~~~~-~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~ 222 (585)
T TIGR01192 144 LFLL-IPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALK 222 (585)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHH
Confidence 3322 233445678888877776666666665555555555666666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (728)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a 426 (728)
+..+++.+...+..+..+....+..++..+...+++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~ 302 (585)
T TIGR01192 223 QFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEA 302 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888877776666665555555555555666778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh
Q 004826 427 LVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (728)
Q Consensus 427 ~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~ 506 (728)
..+++|+.++++.+++..+.....+.+...+.|+|+||+|+|++++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 303 ~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~ 382 (585)
T TIGR01192 303 RAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQ 382 (585)
T ss_pred HHHHHHHHHHHcCCccccCCccCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 99999999999876543221111111112357999999999986668999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCccc
Q 004826 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (728)
Q Consensus 507 gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~d 586 (728)
|+|+|++|+|++||+|+++++.+++|++++||||||++|++||+|||++++|+++++++++|++.+++++++.++|+|||
T Consensus 383 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~ 462 (585)
T TIGR01192 383 RVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYD 462 (585)
T ss_pred cCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeE
Q 004826 587 TVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTS 666 (728)
Q Consensus 587 T~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~Tv 666 (728)
|.+||+|.+ |||||||||+|||||+++|+|||||||||+||+++|+.|.+.|+++.+++|+
T Consensus 463 t~~~~~~~~-------------------LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tv 523 (585)
T TIGR01192 463 TLVGERGNR-------------------LSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTT 523 (585)
T ss_pred chhcCCCCC-------------------CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEE
Confidence 999999988 9999999999999999999999999999999999999999999998889999
Q ss_pred EEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 667 IFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 667 IvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
|+||||+++++.||+|++|++|+++|.|+|+||++++|.|+++|..|.
T Consensus 524 I~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 524 FIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQKDGRFYKLLRRSG 571 (585)
T ss_pred EEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHHCCChHHHHHHhCc
Confidence 999999999999999999999999999999999999999999999884
No 23
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.3e-91 Score=810.73 Aligned_cols=557 Identities=30% Similarity=0.464 Sum_probs=474.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 122 EFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTA 201 (728)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 201 (728)
++++.+++++++.++..++.+..|++++.++|........ ..+..+ .+.++++.+ +..++.+++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~----~~~~~~~~i---~~~~~~~~~~~ 76 (571)
T TIGR02203 11 PYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR-------SVLWWV----PLVVIGLAV---LRGICSFVSTY 76 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-------hHHHHH----HHHHHHHHH---HHHHHHHHHHH
Confidence 4566677777788888888899999999999976432110 111100 111111111 23456788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004826 202 VFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAP 281 (728)
Q Consensus 202 ~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 281 (728)
+..+++.++...+|..+|+|+.+.|.++|++.++|++.++++.|.+.+..++...+..++..++.+++.+ ++++.++|+
T Consensus 77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~-~~l~~~~~~ 155 (571)
T TIGR02203 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLF-IVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHH
Confidence 9999999999999999999999999999999999999999998888888776655555555544443333 334456787
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 282 FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (728)
Q Consensus 282 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (728)
++++.++.+++.+++.....++.++..++..+..++..+.+.|.++|+++||+++.|+++.++|++..+++.+...+..+
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777776666666666666666666677777888888999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004826 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (728)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~ 441 (728)
..+....+..++..+...+++++|++.+.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77776666666555566667778999999999999999999999999999999999999999999999999999998765
Q ss_pred cccCCCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 442 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
+.+.... +.....++|+|+||+|+|++ ++++|+|+||+|+|||+|||||+||||||||+++|+|+|+|++|+|++||
T Consensus 316 ~~~~~~~--~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g 393 (571)
T TIGR02203 316 EKDTGTR--AIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDG 393 (571)
T ss_pred CCCCCCC--CCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECC
Confidence 4322111 11122457999999999985 46899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCC-CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchh
Q 004826 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSL 599 (728)
Q Consensus 521 ~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~-~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~ 599 (728)
+|+++++.+++|++|+||||||+||+|||+|||+++++ +++++++++|++.+++++++.+||+||||+|||+|.+
T Consensus 394 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~---- 469 (571)
T TIGR02203 394 HDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVL---- 469 (571)
T ss_pred EeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCc----
Confidence 99999999999999999999999999999999999987 8999999999999999999999999999999999988
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhc
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~a 679 (728)
|||||||||+||||++++|||||||||||+||++||+.|.+.|++..+++|+|+||||++.++.|
T Consensus 470 ---------------LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~ 534 (571)
T TIGR02203 470 ---------------LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA 534 (571)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhC
Confidence 99999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
|+|++|++|+++|.|+|+||+++++.|++++..|.
T Consensus 535 D~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 535 DRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQF 569 (571)
T ss_pred CEEEEEeCCEEEeeCCHHHHHHcCCHHHHHHHHhh
Confidence 99999999999999999999999999999988663
No 24
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=1.1e-91 Score=807.45 Aligned_cols=524 Identities=24% Similarity=0.303 Sum_probs=430.9
Q ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 004826 110 TLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIAR 189 (728)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 189 (728)
+++++++ ++++.++..+++.++.+++.+..|++++.++|.+.... . . ..+ .. ++..++++.+
T Consensus 3 ~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~-~-----~~~---~~-~~~~~~~~~~-- 64 (529)
T TIGR02868 3 RILPLLQ-----PRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMP-P-V-----LYL---SV-AAVAVRAFGI-- 64 (529)
T ss_pred hHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-h-h-----HHH---HH-HHHHHHHHHH--
Confidence 3455554 45666677777777888889999999999999764211 0 0 000 00 0111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 190 TTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISM 269 (728)
Q Consensus 190 ~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 269 (728)
+..++.+++.++..+++.++..++|.++|+|++++|..+|++.++|++.+++++|.+.++..+...+..++..++.+++
T Consensus 65 -~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~ 143 (529)
T TIGR02868 65 -GRAVFRYLERLVGHDAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSA 143 (529)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345677888888899999999999999999999999999999999999999999988887766555555544443322
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHH
Q 004826 270 VSGILAYKFGAPFAWITSLSVVAYVVFTLSVT-QWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEF 348 (728)
Q Consensus 270 ~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~ 348 (728)
. .++++.++|.+++++++.+++++++...+. +..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++.
T Consensus 144 ~-~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~ 222 (529)
T TIGR02868 144 A-VAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAA 222 (529)
T ss_pred H-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHH
Confidence 2 233445677777766655555444433333 22334445556677788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 349 LRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (728)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~ 428 (728)
.+++.+...+..+..+.......++..+...+++++|++++.+|.+|+|+++++..+...+..|+..+...+..++++.+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (529)
T TIGR02868 223 DRELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRA 302 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888877777666665555556666677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCC--CCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh
Q 004826 429 DMKSMFQLLEEKADIQDRDNA--MPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (728)
Q Consensus 429 s~~rl~~ll~~~~~~~~~~~~--~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~ 506 (728)
+.+|+.++++.+++.++.... ...++..+.|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||++||+
T Consensus 303 ~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 382 (529)
T TIGR02868 303 AAERIEEVTGAKGPRPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLT 382 (529)
T ss_pred HHHHHHHHhcCCCCcCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999999876643221111 111122357999999999987678999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCccc
Q 004826 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (728)
Q Consensus 507 gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~d 586 (728)
|+|+|++|+|++||+|++++ .+++|++|+||||||+||+|||+|||++|+|+++||++++||+.|+++|||++||+|||
T Consensus 383 g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~Gld 461 (529)
T TIGR02868 383 GLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLD 461 (529)
T ss_pred cCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCccccc
Confidence 99999999999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeE
Q 004826 587 TVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTS 666 (728)
Q Consensus 587 T~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~Tv 666 (728)
|+|||+|.+ |||||||||||||||++|||||||||||||||++||+.|+++|+++.+++|+
T Consensus 462 T~ige~G~~-------------------LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~Tv 522 (529)
T TIGR02868 462 TVLGEGGAR-------------------LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTV 522 (529)
T ss_pred chhccccCc-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999988 9999999999999999999999999999999999999999999999899999
Q ss_pred EEeccCc
Q 004826 667 IFIAHRL 673 (728)
Q Consensus 667 IvIaHRL 673 (728)
|+||||+
T Consensus 523 IiItHrl 529 (529)
T TIGR02868 523 VVITHHL 529 (529)
T ss_pred EEEecCC
Confidence 9999996
No 25
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.6e-90 Score=803.07 Aligned_cols=547 Identities=25% Similarity=0.371 Sum_probs=454.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 135 VAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVALRTIRSV 214 (728)
Q Consensus 135 ~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 214 (728)
++..++.++.|++++.++|.+....... ..+.. + ++++++.. ++..++.+++.++..+++.++..++
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~~------~~~~~--~--~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l 71 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMTT------GQILM--W--IGTMVLIA---VVVYLLRYVWRVLLFGASYQLAVEL 71 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcch------hHHHH--H--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667789999999999764211010 00110 0 11111111 1224566777888888999999999
Q ss_pred HHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 004826 215 SRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYV 294 (728)
Q Consensus 215 r~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~~~~~~~~~ 294 (728)
|.++|+|++++|+.+|+++++|++.+++++|.+.+.......+..++..++..++.++++++.++|.+++++++.+++.+
T Consensus 72 r~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~ 151 (569)
T PRK10789 72 REDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMA 151 (569)
T ss_pred HHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888888765544444444443322222223333567777777666666655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 295 VFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIF 374 (728)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 374 (728)
++.....+...+..++.++..++..+.+.|.+.|+++||+|+.|+.+.++|++..+++.+...+..+..+........+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (569)
T PRK10789 152 IMIKRYGDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAI 231 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555556667777889999999999999999999999999999999888888887776666555544444
Q ss_pred HHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCC
Q 004826 375 SAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNL 454 (728)
Q Consensus 375 ~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~ 454 (728)
.+...+++++|++++.+|.+|+|+++++..|...+..|+..++..+..++++.++.+|+.++++.+++.++... +.+.
T Consensus 232 ~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~--~~~~ 309 (569)
T PRK10789 232 GMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSE--PVPE 309 (569)
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCC--CCCC
Confidence 44555566788999999999999999999999999999999999999999999999999999987654322111 1112
Q ss_pred CCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 004826 455 KGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (728)
Q Consensus 455 ~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 533 (728)
..+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|+
T Consensus 310 ~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~ 389 (569)
T PRK10789 310 GRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred CCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHh
Confidence 2357999999999985 468999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 534 ~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
+|+||||+|+||++||+|||++|+|+++++++++|++.+++++++.++|+||||.+||+|.+
T Consensus 390 ~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~------------------ 451 (569)
T PRK10789 390 RLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVM------------------ 451 (569)
T ss_pred heEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCc------------------
Confidence 99999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~ 693 (728)
|||||||||+||||++++|+|||||||||+||+++|+.|.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 452 -LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~ 530 (569)
T PRK10789 452 -LSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQR 530 (569)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChHHHhhccchHHHHHHhhhc
Q 004826 694 GSHDDLLTKAGRYAQLWGQQNN 715 (728)
Q Consensus 694 Gth~eLl~~~g~Y~~l~~~q~~ 715 (728)
|+|+||++++|.|+++|..|..
T Consensus 531 g~~~~l~~~~~~y~~l~~~~~~ 552 (569)
T PRK10789 531 GNHDQLAQQSGWYRDMYRYQQL 552 (569)
T ss_pred cCHHHHHHcCChHHHHHHHhhh
Confidence 9999999999999999997754
No 26
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.5e-89 Score=797.59 Aligned_cols=568 Identities=30% Similarity=0.462 Sum_probs=468.0
Q ss_pred HHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHH
Q 004826 107 IFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYG 186 (728)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 186 (728)
.++.++++++ .+++.+.+.+++.++..++.+..|++++.++|.+...... ..+..++ .+++++.
T Consensus 5 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-------~~~~~~~----~~~~~~~ 68 (576)
T TIGR02204 5 PLAALWPFVR-----PYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS-------GLLNRYF----AFLLVVA 68 (576)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH-------HHHHHHH----HHHHHHH
Confidence 3556666665 3466666777777788889999999999999985422110 0111111 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 004826 187 IARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILE 266 (728)
Q Consensus 187 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 266 (728)
+ +..++.+++.++..+++.++...+|.++|+|++++|..+|++.++|++.+++++|.+.+..+....+..++..++.
T Consensus 69 ~---~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 145 (576)
T TIGR02204 69 L---VLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALM 145 (576)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1234567788888999999999999999999999999999999999999999988888877765544444444433
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHH
Q 004826 267 ISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYD 346 (728)
Q Consensus 267 ~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~ 346 (728)
+++. .++++.++|++++++++.+++.+++.....+..++..+...+..++..+.+.|.+.|+++||+++.|+.+.++|+
T Consensus 146 ~~~~-~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~ 224 (576)
T TIGR02204 146 CIGG-LIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFG 224 (576)
T ss_pred HHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHH
Confidence 3222 233445567777766665555555555455555556666666777888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 347 EFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQS 426 (728)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a 426 (728)
+..+++.+...+..+.......+...+..+..++++++|++.+.+|.+|+|+++++..+...+..|+..+...+.+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~ 304 (576)
T TIGR02204 225 GAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRA 304 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888777666655555544444444445556667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccCCCCCCC-CCCCCceEEEEEEEEEecCC--ceeeeeeeEEEeCCcEEEEECCCCccHHHHHH
Q 004826 427 LVDMKSMFQLLEEKADIQDRDNAMP-LNLKGGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (728)
Q Consensus 427 ~~s~~rl~~ll~~~~~~~~~~~~~~-~~~~~g~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~ 503 (728)
..+++|+.++++.+++.+......+ ..+..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||++
T Consensus 305 ~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlk 384 (576)
T TIGR02204 305 AGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQ 384 (576)
T ss_pred HHHHHHHHHHhCCCCcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 9999999999987654222111111 11123579999999999842 68999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCC
Q 004826 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPA 583 (728)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~ 583 (728)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||++|+|+.++++++++++.++++++++++|+
T Consensus 385 lL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~ 464 (576)
T TIGR02204 385 LLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE 464 (576)
T ss_pred HHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCC
Q 004826 584 KYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN 663 (728)
Q Consensus 584 G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~ 663 (728)
|+||.+||+|.+ |||||||||+||||++++|+|||||||||+||++||+.|.+.|+++.++
T Consensus 465 gl~t~i~~~g~~-------------------LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~ 525 (576)
T TIGR02204 465 GYDTYLGERGVT-------------------LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKG 525 (576)
T ss_pred CCCceeCCCCCc-------------------CCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCC
Confidence 999999999988 9999999999999999999999999999999999999999999999889
Q ss_pred CeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhh
Q 004826 664 RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 713 (728)
Q Consensus 664 ~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q 713 (728)
+|+|+||||++.++.||+|++|++|+++|.|+|+||+++++.|++|+..|
T Consensus 526 ~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 526 RTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred CEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHHcCChHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999876
No 27
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.7e-90 Score=869.65 Aligned_cols=495 Identities=21% Similarity=0.284 Sum_probs=409.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (728)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (728)
++.+++.+++...+.+...++|.++|++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.++..+++
T Consensus 1020 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~ 1099 (1522)
T TIGR00957 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIV 1099 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888899999999999999999999999999999999999999999999988776666666655544333332
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHH
Q 004826 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (728)
Q Consensus 274 l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~ 353 (728)
+ +..+|.+.++++..++++.++...+.+..+..++...+..+...+.+.|++.|+++||+|++|+++.+++.+..+...
T Consensus 1100 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~ 1178 (1522)
T TIGR00957 1100 I-LLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQ 1178 (1522)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2 223333322222222222222222222233333434445667789999999999999999999999999888887776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL-SGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKS 432 (728)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~-~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~r 432 (728)
+..........++.....++.. .++++++++.+. .|.+++|.+.+++.|+.++..|+..+...+.++++++.+++|
T Consensus 1179 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eR 1255 (1522)
T TIGR00957 1179 KAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVER 1255 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544444444433333221 122333444444 588999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccC--CC-CCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 433 MFQLLEEKADIQD--RD-NAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 433 l~~ll~~~~~~~~--~~-~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+.++++.+++... +. .+.+.++..|.|+|+||+|+|+++ ++||+||||+|+|||+|||||+||||||||+++|+|+
T Consensus 1256 i~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl 1335 (1522)
T TIGR00957 1256 LKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRI 1335 (1522)
T ss_pred HHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 9999987665321 11 111123445789999999999854 5899999999999999999999999999999999999
Q ss_pred CCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccch
Q 004826 509 FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (728)
Q Consensus 509 y~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~ 588 (728)
|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++.. +++|||+++|++.|+++|+|.++|+||||+
T Consensus 1336 ~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~ 1414 (1522)
T TIGR00957 1336 NESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHE 1414 (1522)
T ss_pred ccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCce
Confidence 9999999999999999999999999999999999999999999998554 589999999999999999999999999999
Q ss_pred hhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEE
Q 004826 589 VGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIF 668 (728)
Q Consensus 589 vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIv 668 (728)
|||+|.+ |||||||||||||||+++|+|||||||||+||++||+.|+++|++..++||+|+
T Consensus 1415 v~e~G~~-------------------LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~ 1475 (1522)
T TIGR00957 1415 CAEGGEN-------------------LSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLT 1475 (1522)
T ss_pred ecCCCCc-------------------CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999988 999999999999999999999999999999999999999999999999999999
Q ss_pred eccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHh
Q 004826 669 IAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 712 (728)
Q Consensus 669 IaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~ 712 (728)
||||++|+++||||+|||+|+|+|.|+|+||++++|.|++|++.
T Consensus 1476 IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f~~l~~~ 1519 (1522)
T TIGR00957 1476 IAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIFYSMAKD 1519 (1522)
T ss_pred EecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999976
No 28
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.6e-89 Score=861.11 Aligned_cols=506 Identities=21% Similarity=0.296 Sum_probs=391.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (728)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (728)
.++.+++.+++...+.+...++|.++|++++++|+.||+++++|++.+|++.|.+.++..+...+..++..++.++..++
T Consensus 967 ~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1046 (1622)
T PLN03130 967 VLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFV 1046 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888999999999999999999999999999999999999999999999988776666666665554443333
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHH
Q 004826 273 ILAYKFGAPFAWITSLSVVAYVVFT-LSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (728)
Q Consensus 273 il~~~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~ 351 (728)
++.+ ..+ +.+++++++++.+++. ....+..+...+......+...+.+.|+++|+++||+|+.++++.+++.+..+.
T Consensus 1047 ~i~~-~~~-~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~ 1124 (1622)
T PLN03130 1047 LIGI-VST-ISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDN 1124 (1622)
T ss_pred HHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHH
Confidence 2222 222 2222222222111111 111122222333333445567788999999999999999998776666554444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-cC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 352 YEDAALKTQRSLAFLNFGQNVIFSAALST-AMVLCSHGILSGE-MT-----VGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (728)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~l~~g~~~v~~g~-lt-----~G~l~a~~~~~~~l~~pl~~l~~~~~~~~ 424 (728)
.. +..........+..+.......+ +++.+.+.+..+. .+ .+.+..+++++..+..++..+...+..++
T Consensus 1125 ~~----~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e 1200 (1622)
T PLN03130 1125 NI----RFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAE 1200 (1622)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 22222221111111111111111 2222333344331 11 23333444466677778888888888999
Q ss_pred HHHHHHHHHHHHhcccccccCC---CCCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHH
Q 004826 425 QSLVDMKSMFQLLEEKADIQDR---DNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKST 500 (728)
Q Consensus 425 ~a~~s~~rl~~ll~~~~~~~~~---~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKST 500 (728)
.++.+++|+.++++.++|.+.. ..+.+.++..|.|+|+||+|+|+++ ++||+||||+|+|||+|||||+|||||||
T Consensus 1201 ~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKST 1280 (1622)
T PLN03130 1201 NSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSS 1280 (1622)
T ss_pred HHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999999877654221 1112223445789999999999754 58999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHh
Q 004826 501 ILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMN 580 (728)
Q Consensus 501 L~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~ 580 (728)
|+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||.+++ +++|+|+++||+.|+++|||++
T Consensus 1281 Ll~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1281 MLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999997 5899999999999999999999
Q ss_pred CCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH
Q 004826 581 FPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL 660 (728)
Q Consensus 581 LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l 660 (728)
||+||||+|||+|.+ |||||||||||||||+|+|+|||||||||+||++||+.|+++|++.
T Consensus 1360 lp~GLdt~Vge~G~n-------------------LSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~ 1420 (1622)
T PLN03130 1360 NSLGLDAEVSEAGEN-------------------FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREE 1420 (1622)
T ss_pred CccccCccccCCCCC-------------------CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999988 9999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhc-cchHHHHHHhhhc-chhhHHHHh
Q 004826 661 ANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQQNN-TADAIDAAV 724 (728)
Q Consensus 661 ~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~l~~~q~~-~~~~~~~~~ 724 (728)
.++||+|+||||++|+++||||+|||+|+|+|.|+|+||+++ +|.|++|++.+.. .++.+.+.|
T Consensus 1421 ~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~~~~~~~l~~~a 1486 (1622)
T PLN03130 1421 FKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAANAQYLRSLV 1486 (1622)
T ss_pred CCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcChhhhHHHHHHH
Confidence 999999999999999999999999999999999999999987 6999999987643 234444444
No 29
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-89 Score=735.94 Aligned_cols=554 Identities=24% Similarity=0.371 Sum_probs=443.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (728)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (728)
|+.+.+++++.++..+..+..-.+.+++|..-... +....+ -+..+.+.+-++++.|.+ ..|......
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia--------g~~~~f-~~~~p~a~VR~~aI~Rt~---~RY~ERlvs 82 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA--------GLAYIF-NVMLPSAGVRGLAILRTA---ARYVERLVS 82 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc--------cHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence 44455555555544445555556667776532111 111111 233456677778887755 455666788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004826 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (728)
Q Consensus 204 ~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (728)
+....++..++|.++|+++..+++.-..+..+||+.+|+..|++.+++++--.+.-.+..++.+.+ +++..-.++|+++
T Consensus 83 H~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~-~~i~L~f~~~~~A 161 (573)
T COG4987 83 HDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAV-VTIGLSFFSIPLA 161 (573)
T ss_pred hHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHH-HHHHHHHhhHHHH
Confidence 899999999999999999999999999999999999999999999887754433322222222211 2222224566666
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 284 WITSLSVVAY-VVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (728)
Q Consensus 284 ~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (728)
+.+.+.+.+. +++.....+..++..++..+..+.+.+.+.|.+.|..+.+.||.++++.+.+.+..+.+.+...+.++.
T Consensus 162 lll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~ 241 (573)
T COG4987 162 LLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARF 241 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6544443332 233333445566677777778888889999999999999999999999999999998898888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccc
Q 004826 363 LAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLG-SVYRETVQSLVDMKSMFQLLEEKA 441 (728)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~-~~~~~~~~a~~s~~rl~~ll~~~~ 441 (728)
..+......++....++..+++.+..+-.|..+.-...++....+....++..+. ..+.++.+...|++|+.++++.++
T Consensus 242 ~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~ 321 (573)
T COG4987 242 TGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKP 321 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCc
Confidence 8777776666555444434444444455677664444444444455556666666 777899999999999999999988
Q ss_pred cccCCCCCCCCCCCCceEEEEEEEEEecCCc-eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 442 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~-~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
+...++...+. .+..++++||||+||+++ ++|+|+||++++||+|||+|+|||||||+++||.|-|+|++|+|+++|
T Consensus 322 e~~~~~~~~~~--~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 322 EVTFPDEQTAT--TGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred ccCCCccccCC--ccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 76544221111 122799999999999654 899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 521 ~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
.|++.++.+.+|+.|++++|.++||++|+||||++++|++||||+|+|++++++++++++.|+||+|.+||+|.+
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~----- 474 (573)
T COG4987 400 VEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRR----- 474 (573)
T ss_pred cChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCc-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcC
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCD 680 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD 680 (728)
||||||||+||||+|++|+|++||||||.+||++||++|++.|.+..+|||+|+||||+.-++.||
T Consensus 475 --------------LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~d 540 (573)
T COG4987 475 --------------LSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMD 540 (573)
T ss_pred --------------CCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCEEEEEcChHHHhhccchHHHHHH
Q 004826 681 EIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
||+|||+|+|+|+|+|+||++++|.|+++++
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~~~g~~~~l~q 571 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571 (573)
T ss_pred EEEEEECCeeeecCCHHhhhccccHHHHHhc
Confidence 9999999999999999999999999999985
No 30
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.4e-87 Score=773.31 Aligned_cols=526 Identities=25% Similarity=0.358 Sum_probs=430.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (728)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (728)
+.+.+++++.++.+++.+..|++++.++|.+....... ..+... ++.+++.++ +..++.+++.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~------~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~ 69 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPL------AELLPA----LGALALAVL---LRALLGWLGERAAA 69 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCh------HHHHHH----HHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34556666677788889999999999999874111110 011110 111111111 23456788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 004826 205 KVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAW 284 (728)
Q Consensus 205 ~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~ 284 (728)
+++.++..++|.++|+|++++|..+|++.++|++.+++++|.+.++.++...+..++..++..++. .++++.++|.+++
T Consensus 70 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~ 148 (529)
T TIGR02857 70 RAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAI-LAAVFPADWISGL 148 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999999888877655444444443332222 2334445677766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 285 ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLA 364 (728)
Q Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (728)
++++.+++.+++.....++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+...
T Consensus 149 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (529)
T TIGR02857 149 ILLLTAPLIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAF 228 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66655555544444444444445555666777888899999999999999999999999999999998888877777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 004826 365 FLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ 444 (728)
Q Consensus 365 ~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~ 444 (728)
.......++..+...++++++++.+.+|.+|+|.++++..+...+..|+..+...+..++++..+++|+.++++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 229 LSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 65555554444444444456667777999999999999999999999999999999999999999999999998553321
Q ss_pred CCCCCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeC
Q 004826 445 DRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI 523 (728)
Q Consensus 445 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di 523 (728)
+. ...+ +...+.|+|+||+|+|++. +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+
T Consensus 309 ~~-~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i 386 (529)
T TIGR02857 309 GK-APVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPL 386 (529)
T ss_pred CC-cCCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeh
Confidence 11 1111 1123579999999999864 4899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 524 CEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 524 ~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
++++.+++|++|+||||||++|++||+|||++++|+++|+++++|++.+++++||+++|+||||++||+|.+
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~-------- 458 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAG-------- 458 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhcccccc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 683 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~Ii 683 (728)
|||||||||+||||+++||+|||||||||+||++||+.|+++|+++.+++|+|+||||+++++.||+|+
T Consensus 459 -----------LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~ 527 (529)
T TIGR02857 459 -----------LSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIV 527 (529)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EE
Q 004826 684 VL 685 (728)
Q Consensus 684 Vl 685 (728)
||
T Consensus 528 ~l 529 (529)
T TIGR02857 528 VL 529 (529)
T ss_pred eC
Confidence 86
No 31
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=8.5e-88 Score=847.14 Aligned_cols=498 Identities=20% Similarity=0.311 Sum_probs=390.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (728)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (728)
.++.+++.+++...+.+...++|.++|++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.++..++
T Consensus 964 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i 1043 (1495)
T PLN03232 964 VAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFA 1043 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888999999999999999999999999999999999999999999999988776655555555443332222
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHH
Q 004826 273 ILAYKFGAPFAWITSLSVVAYVVFTLSV-TQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRR 351 (728)
Q Consensus 273 il~~~~~~~l~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~ 351 (728)
++.+ ..+ +.+++++++++.+.+.... .+..+..++......+...+.+.|++.|+++||+|+.++++.+++++..+.
T Consensus 1044 ~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~ 1121 (1495)
T PLN03232 1044 LIGT-VST-ISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDN 1121 (1495)
T ss_pred HHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHH
Confidence 2222 222 2222222211111111111 122223334444555677788999999999999999998877766665544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCc----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 352 YEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGIL-SGEM----T-VGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (728)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~-~g~l----t-~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~ 425 (728)
..+..........+....... +...++++.+.+.+. .|.+ + .+.+..++.++..+..|+..+...+.+++.
T Consensus 1122 ~~~~~~~~~~~~~wl~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~ 1198 (1495)
T PLN03232 1122 NIRFTLANTSSNRWLTIRLET---LGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAEN 1198 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 433322211111111111111 111111222333343 2332 1 233344677888899999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCC--C-CCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHH
Q 004826 426 SLVDMKSMFQLLEEKADIQDR--D-NAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTI 501 (728)
Q Consensus 426 a~~s~~rl~~ll~~~~~~~~~--~-~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL 501 (728)
++.+++|+.++++.+++.+.. . .+.+.++..|.|+|+||+|+|+++ ++||+|+||+|+|||+|||||+||||||||
T Consensus 1199 ~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL 1278 (1495)
T PLN03232 1199 SLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSM 1278 (1495)
T ss_pred HHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999999877654321 1 111223445789999999999754 689999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhC
Q 004826 502 LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (728)
Q Consensus 502 ~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~L 581 (728)
+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||++++ +++|||+++|++.|+++|||+++
T Consensus 1279 ~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~l 1357 (1495)
T PLN03232 1279 LNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRN 1357 (1495)
T ss_pred HHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999987 68999999999999999999999
Q ss_pred CCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc
Q 004826 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 661 (728)
Q Consensus 582 P~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 661 (728)
|+||||+|||+|.+ |||||||||||||||+++|+|||||||||+||++||+.|+++|++..
T Consensus 1358 p~GLdt~v~e~G~~-------------------LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~ 1418 (1495)
T PLN03232 1358 PFGLDAEVSEGGEN-------------------FSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF 1418 (1495)
T ss_pred cCCCCceecCCCCC-------------------CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 99999999999988 99999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhcc-chHHHHHHhhhc
Q 004826 662 NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKA-GRYAQLWGQQNN 715 (728)
Q Consensus 662 ~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~-g~Y~~l~~~q~~ 715 (728)
++||+|+||||++|+++||+|+|||+|+|+|.|+|+||++++ |.|++|++.+..
T Consensus 1419 ~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1419 KSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred CCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 999999999999999999999999999999999999999886 599999988754
No 32
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.8e-87 Score=843.39 Aligned_cols=495 Identities=21% Similarity=0.293 Sum_probs=399.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 199 RTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKF 278 (728)
Q Consensus 199 ~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 278 (728)
+.+.....+.+..+.+|.++|++++++|+.||+++++|++.+|+++|.+.++..+...+..++..++.+++.+++ ++..
T Consensus 1018 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~-~~~~ 1096 (1560)
T PTZ00243 1018 RFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILV-TSAS 1096 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 333444555666789999999999999999999999999999999999999888766655555555444333322 2223
Q ss_pred hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q 004826 279 GAPFAWITSLSVV-AYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAAL 357 (728)
Q Consensus 279 ~~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~ 357 (728)
.|.+ ++++++++ ++..+...+.+..+..++......+...+.+.|++.|+++||+|+.|+.+.++|.+..+...+...
T Consensus 1097 ~p~~-~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1097 QPFV-LVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 3322 22111111 111122222222333444444556677899999999999999999999999999998888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 358 KTQRSLAFLNFGQNVIFSAALSTAMVLCSHGI--LSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQ 435 (728)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v--~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ 435 (728)
.......+......++..+...++.+++.+.. ..+.+++|.+.+++++...+..|+..+...+.++++++.+++|+.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65544444444444443333333333333332 3456899999999999999999999999999999999999999999
Q ss_pred Hhccccccc-C--------------------------CCCCC---CCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeC
Q 004826 436 LLEEKADIQ-D--------------------------RDNAM---PLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPA 484 (728)
Q Consensus 436 ll~~~~~~~-~--------------------------~~~~~---~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~ 484 (728)
+++..++.+ + +..+. +.++..|.|+|+||+|+|+++ ++||+||||+|+|
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~ 1335 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAP 1335 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECC
Confidence 996433211 0 00000 112234789999999999865 4699999999999
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHH
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdee 564 (728)
||+|||||+||||||||+++|+|+|+|++|+|+|||+|++++++++||++|++|||||+||+|||||||++++ +++|+|
T Consensus 1336 GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdee 1414 (1560)
T PTZ00243 1336 REKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAE 1414 (1560)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999875 689999
Q ss_pred HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccC-CCEEEEeCcCc
Q 004826 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKA-PPILLCDEATS 643 (728)
Q Consensus 565 i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~-p~ILILDEaTS 643 (728)
+++||+.|+++|+|.+||+||||.|||+|.+ |||||||||||||||+++ |+|||||||||
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~n-------------------LSgGQrQrLaLARALL~~~~~ILlLDEATS 1475 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSN-------------------YSVGQRQLMCMARALLKKGSGFILMDEATA 1475 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCc-------------------CCHHHHHHHHHHHHHhcCCCCEEEEeCCCc
Confidence 9999999999999999999999999999988 999999999999999996 89999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhc-cchHHHHHHhhhc
Q 004826 644 ALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQQNN 715 (728)
Q Consensus 644 aLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~l~~~q~~ 715 (728)
+||++||+.|+++|++.+++||+|+||||++|+++||+|+|||+|+|+|.|+|+||+++ +|.|++|++.+..
T Consensus 1476 aLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~~ 1548 (1560)
T PTZ00243 1476 NIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALGR 1548 (1560)
T ss_pred cCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 99999999999999999999999999999999999999999999999999999999985 8999999987743
No 33
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.2e-86 Score=762.82 Aligned_cols=537 Identities=25% Similarity=0.328 Sum_probs=437.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 123 FRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAV 202 (728)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 202 (728)
+++.++..+++.++..++.++.|++++.++|.+...... ..+..+ +++++++ .++..++.+++.++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~-------~~l~~~----~~~~~~~---~~~~~~~~~~~~~~ 69 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV-------PTLLML----TVLALGL---YLFLGLLDALRSFV 69 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch-------hHHHHH----HHHHHHH---HHHHHHHHHHHHHH
Confidence 455566677777778889999999999999976522110 011111 1111111 11234577888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004826 203 FSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSS-MVFNVVPTILEISMVSGILAYKFGAP 281 (728)
Q Consensus 203 ~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~ 281 (728)
..+++.++..++|.++|+|++++|+.. .++...++.+|.+.++.++.. .+..++..++.++ . .++++.++|+
T Consensus 70 ~~~~~~~~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~ 142 (544)
T TIGR01842 70 LVRIGEKLDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-Y-LLVCFLLHPW 142 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-H-HHHHHHHhhH
Confidence 999999999999999999999999842 234445566677777665443 2333333332222 2 2344556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 282 FAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (728)
Q Consensus 282 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (728)
+++++++.+++++++.....+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..+++.+...+..+
T Consensus 143 l~li~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 222 (544)
T TIGR01842 143 IGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASD 222 (544)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766655555444444444444555566667777888899999999999999999999999999999998888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004826 362 SLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA 441 (728)
Q Consensus 362 ~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~ 441 (728)
..+.......++..+...+++++|++++.+|.+|+|+++++..++..+..|+..+...+..++++..+.+|+.++++.++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 302 (544)
T TIGR01842 223 RAGMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYP 302 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 66665555544444455566678999999999999999999999999999999999999999999999999999998765
Q ss_pred cccCCCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 442 DIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 442 ~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
+..+.. +.+...+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 303 ~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 379 (544)
T TIGR01842 303 SRDPAM---PLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDG 379 (544)
T ss_pred cccCCC---CCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 432211 11122357999999999985 46899999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 521 ~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
+|+++++.+++|++|+||||||++|++||+|||++++++++++++++|++.+++++++++||+||||.+||+|.+
T Consensus 380 ~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~----- 454 (544)
T TIGR01842 380 ADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGAT----- 454 (544)
T ss_pred EehhhCCHHHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCC-----
Confidence 999999999999999999999999999999999998888999999999999999999999999999999999988
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhc
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~a 679 (728)
|||||||||+||||+++||+|||||||||+||+++|+.|.+.|+++. +++|+|+||||+++++.|
T Consensus 455 --------------LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~ 520 (544)
T TIGR01842 455 --------------LSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV 520 (544)
T ss_pred --------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999875 689999999999999999
Q ss_pred CeEEEEeCCEEEEEcChHHHhhc
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|+|++|++|+++|.|+|+||+++
T Consensus 521 d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 521 DKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred CEEEEEECCEEEeeCCHHHHhhc
Confidence 99999999999999999999864
No 34
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.6e-86 Score=825.61 Aligned_cols=565 Identities=25% Similarity=0.327 Sum_probs=468.6
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004826 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (728)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (728)
+..+++|.- +.++..+++++++.++..++..+.|++++.++|.+... . . ...+. ..++++++
T Consensus 47 ~~~~~~~~~----~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~--~-~-----~~~~~------~~~~~~~i 108 (1466)
T PTZ00265 47 FFLPFKCLP----ASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG--E-N-----VNDII------FSLVLIGI 108 (1466)
T ss_pred HHHHHhcCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--c-h-----HHHHH------HHHHHHHH
Confidence 555666654 34566777777777777788888999999999976321 0 0 01111 01111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004826 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (728)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (728)
+..++.+++.+++.+++.++..++|.++|+|++++|..||+++.+|++.++++.|.+.++..+...+..++..++.+
T Consensus 109 ---~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~ 185 (1466)
T PTZ00265 109 ---FQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAF 185 (1466)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22456788999999999999999999999999999999999999999999999888888777665555555555433
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 004826 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (728)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~ 347 (728)
+ +..++++.++|.+++++++++|+++++...+.++.++..+..++..++.++.+.|.+.|+++||+|+.|+.+.++|++
T Consensus 186 i-~~~i~~~~~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~ 264 (1466)
T PTZ00265 186 L-GLYIWSLFKNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNL 264 (1466)
T ss_pred H-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHH
Confidence 3 333455667888888888777777776666666666666666666678889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSG--------EMTVGDLVMVNGLLFQLSLPLNFLGSV 419 (728)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g--------~lt~G~l~a~~~~~~~l~~pl~~l~~~ 419 (728)
..+.+.+...+.....+.......++..+..++++|+|++++.+| .+|+|+++++..+......++..+...
T Consensus 265 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~ 344 (1466)
T PTZ00265 265 SEKLYSKYILKANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPN 344 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888888777776666665555566777788999999886 589999988776665555566677778
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCcc
Q 004826 420 YRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSG 497 (728)
Q Consensus 420 ~~~~~~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSG 497 (728)
+..++++.++++|++++++.++++++.......+ ..+.|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||
T Consensus 345 ~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsG 423 (1466)
T PTZ00265 345 ITEYMKSLEATNSLYEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCG 423 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCC
Confidence 8899999999999999999877643221111111 1247999999999984 347999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCEEEE-CCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCC------------------
Q 004826 498 KSTILRLLFRSFDTHSGSIRI-DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL------------------ 558 (728)
Q Consensus 498 KSTL~~LL~gly~p~~G~I~i-dG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~------------------ 558 (728)
||||+++|+|+|+|++|+|++ ||+|+++++..++|++||||+|+|.||++||+|||++|.+
T Consensus 424 KSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~ 503 (1466)
T PTZ00265 424 KSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGND 503 (1466)
T ss_pred HHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccc
Confidence 999999999999999999999 6799999999999999999999999999999999999742
Q ss_pred ---------------------------------------CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchh
Q 004826 559 ---------------------------------------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSL 599 (728)
Q Consensus 559 ---------------------------------------~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~ 599 (728)
+++++++++||+.+++++||.+||+||||.||++|.+
T Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~---- 579 (1466)
T PTZ00265 504 SQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASK---- 579 (1466)
T ss_pred ccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCc----
Confidence 3578999999999999999999999999999999988
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM 677 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~ 677 (728)
|||||||||+|||||+++|+|||||||||+||+++|+.|++.|+++. +++|+|+||||+++++
T Consensus 580 ---------------LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~ 644 (1466)
T PTZ00265 580 ---------------LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIR 644 (1466)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999999999986 4899999999999999
Q ss_pred hcCeEEEEeCC-----------------------------------------------EEEEEcChHHHhh-ccchHHHH
Q 004826 678 QCDEIIVLENG-----------------------------------------------KVIEQGSHDDLLT-KAGRYAQL 709 (728)
Q Consensus 678 ~aD~IiVld~G-----------------------------------------------~Ive~Gth~eLl~-~~g~Y~~l 709 (728)
.||+|+||++| +|||+|||+||++ ++|.|+.|
T Consensus 645 ~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l 724 (1466)
T PTZ00265 645 YANTIFVLSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTM 724 (1466)
T ss_pred hCCEEEEEeCCccccccccccccccccccccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHH
Confidence 99999999986 5999999999998 79999999
Q ss_pred HHhhh
Q 004826 710 WGQQN 714 (728)
Q Consensus 710 ~~~q~ 714 (728)
+..|.
T Consensus 725 ~~~q~ 729 (1466)
T PTZ00265 725 INNQK 729 (1466)
T ss_pred Hhhhc
Confidence 98874
No 35
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8.1e-85 Score=781.94 Aligned_cols=499 Identities=23% Similarity=0.381 Sum_probs=409.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 191 TASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (728)
Q Consensus 191 ~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (728)
+..++..+|++.+...+.+..+.|+.++++++++.|+.|||..++|.|.+|++.|.+.++..+...+..++..++.++.+
T Consensus 870 ~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~ 949 (1381)
T KOG0054|consen 870 ASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGI 949 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33456668899999999999999999999999999999999999999999999999999888777766666666655544
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHH
Q 004826 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLR 350 (728)
Q Consensus 271 ~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~ 350 (728)
++++.+. .|++.+.++...+++..+...+..-.+.+++......+-..+++.|+++|+.|||+|+.|+++.+++....+
T Consensus 950 ~~vi~~~-~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D 1028 (1381)
T KOG0054|consen 950 LVVISYV-TPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELID 1028 (1381)
T ss_pred HHHhhHH-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhh
Confidence 4443332 232222211111111111111111122233333334556778999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 351 RYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDM 430 (728)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~ 430 (728)
.+.+...-......++.....++..+.+.++.++... ...+..+.|.+...++|..++..-++.+.+...++...+.|+
T Consensus 1029 ~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl-~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SV 1107 (1381)
T KOG0054|consen 1029 ENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL-LPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSV 1107 (1381)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 8877755544444444444444433322222222211 112227789999999999999999999999999999999999
Q ss_pred HHHHHHhccccccc---CCCCCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh
Q 004826 431 KSMFQLLEEKADIQ---DRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (728)
Q Consensus 431 ~rl~~ll~~~~~~~---~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~ 506 (728)
||+.++.+.|+|.+ +...+++.||..|+|+|+|++.+|.++ ++||+||||+|+|||||||||+||||||||++.|.
T Consensus 1108 ERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLF 1187 (1381)
T KOG0054|consen 1108 ERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALF 1187 (1381)
T ss_pred hHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHH
Confidence 99999998766511 112245567888999999999999865 68999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCccc
Q 004826 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (728)
Q Consensus 507 gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~d 586 (728)
|+.+|.+|+|.|||+||.++.+++||++++++||||.||+||||.||...+ +.+|+|||+|+++|++.++|+++|+|+|
T Consensus 1188 Rl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld 1266 (1381)
T KOG0054|consen 1188 RLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPGGLD 1266 (1381)
T ss_pred HhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCcCCC
Confidence 999999999999999999999999999999999999999999999999887 5899999999999999999999999999
Q ss_pred chhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeE
Q 004826 587 TVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTS 666 (728)
Q Consensus 587 T~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~Tv 666 (728)
++|.|+|.| +|-||||.+||||||||+++||||||||+++|++|+..||++|++.+++|||
T Consensus 1267 ~~v~egG~N-------------------~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTV 1327 (1381)
T KOG0054|consen 1267 SEVSEGGEN-------------------FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTV 1327 (1381)
T ss_pred ceecCCCcc-------------------CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeE
Confidence 999999988 9999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhc-cchHHHHHH
Q 004826 667 IFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWG 711 (728)
Q Consensus 667 IvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~l~~ 711 (728)
|.||||++||.|||||+|||+|+|+|.|+|++|+++ ++.|+++..
T Consensus 1328 ltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1328 LTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred EEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 999999999999999999999999999999999976 666765544
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1e-82 Score=799.87 Aligned_cols=496 Identities=21% Similarity=0.320 Sum_probs=398.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 194 AFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGI 273 (728)
Q Consensus 194 ~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i 273 (728)
++.+++.+++.+.+.+...++|.++|+++++.|+.||++.++|++.+|+++|.+.++..+...+..++..++.+++.+++
T Consensus 940 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~ 1019 (1490)
T TIGR01271 940 ALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV 1019 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999999999999999999999999999999999887776666655555444333332
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHH
Q 004826 274 LAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYE 353 (728)
Q Consensus 274 l~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~ 353 (728)
+ +.++|++.++++..+++++++...+.+..+...+......+.+.+.+.|++.|+.+||+|++|+++.++|.+..+...
T Consensus 1020 i-~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1020 V-SVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 2 333443332222211111212222222233334434455567788999999999999999999999999999887655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 354 DAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSM 433 (728)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl 433 (728)
+..........++.....++..+....+.++ .+....++.|.+..+++++..+..++..+...+.+++.++.+++|+
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi 1175 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRV 1175 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333333332222111111111 1112235667777777788889999999999999999999999999
Q ss_pred HHHhcccccccCCCC-----------------CCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCC
Q 004826 434 FQLLEEKADIQDRDN-----------------AMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSG 495 (728)
Q Consensus 434 ~~ll~~~~~~~~~~~-----------------~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SG 495 (728)
.++++.+++...... ..+.++..|.|+|+||+|+|++ .+++|+||||+|+|||+|||||+||
T Consensus 1176 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSG 1255 (1490)
T TIGR01271 1176 FKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTG 1255 (1490)
T ss_pred HHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCC
Confidence 999977655321100 0112344578999999999985 4789999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccH
Q 004826 496 SGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (728)
Q Consensus 496 SGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~ 575 (728)
||||||+++|+|+|+ ++|+|+|||+|+++++++++|++|+||||||+||+|||||||.++. +++|+++|+|++.++++
T Consensus 1256 sGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~ 1333 (1490)
T TIGR01271 1256 SGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLK 1333 (1490)
T ss_pred CCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCH
Confidence 999999999999997 8999999999999999999999999999999999999999998875 58999999999999999
Q ss_pred HHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHH
Q 004826 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN 655 (728)
Q Consensus 576 ~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~ 655 (728)
++|.++|+||||+|||+|.+ |||||||||||||||+++|+|||||||||+||++||+.|++
T Consensus 1334 ~~i~~lp~GLdt~v~e~G~n-------------------LSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~ 1394 (1490)
T TIGR01271 1334 SVIEQFPDKLDFVLVDGGYV-------------------LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK 1394 (1490)
T ss_pred HHHHhCccccccccccCCCc-------------------CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 99999999999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 656 ALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 656 ~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
.|++..++||+|+||||++|+++||+|+|||+|+|+|.|+|+||++++|.|++|++.+.
T Consensus 1395 ~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1395 TLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999998663
No 37
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.2e-80 Score=718.19 Aligned_cols=531 Identities=17% Similarity=0.167 Sum_probs=413.2
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004826 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (728)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (728)
+++++++++ .++++.+++++++.++..+..+..|++++.++|..... .. ..+ .+ .+++. +
T Consensus 5 ~~~l~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~--~~------~~~---~~-~~~~~----~ 64 (555)
T TIGR01194 5 IGEILALLR----SPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFL--GQ------GSL---FS-FGGLC----L 64 (555)
T ss_pred HHHHHHHHh----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cc------hHH---HH-HHHHH----H
Confidence 455666554 14577778888888888888899999888887742100 00 001 00 01111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004826 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (728)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (728)
+..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++.++.. +..++..++.+
T Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~ 140 (555)
T TIGR01194 65 ---LALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIF 140 (555)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 12345677888889999999999999999999999999999999999999999999988877653 33334333333
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchH--HHHHHH
Q 004826 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEA--FEAEQY 345 (728)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~--~~~~~~ 345 (728)
+ ++.++++.++|.+++++++.+++.+++..+..+..++..++.++..++.++.+.|.+.|+++||+|+.++ .+.+++
T Consensus 141 ~-~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~ 219 (555)
T TIGR01194 141 F-FCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAI 219 (555)
T ss_pred H-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHh
Confidence 2 2223445567777777665555544444444444444455566677788899999999999999999954 567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (728)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~ 425 (728)
++..+++.+...+..+..........++..+...++++++++ .|.+|+|++++|+.++..+..|+..++..+.++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~ 296 (555)
T TIGR01194 220 QESANNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQ 296 (555)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777766555444333333332222222223333333 37899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccc--c-C-CCCCC----CCCCCCceEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECC
Q 004826 426 SLVDMKSMFQLLEEKADI--Q-D-RDNAM----PLNLKGGSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGT 493 (728)
Q Consensus 426 a~~s~~rl~~ll~~~~~~--~-~-~~~~~----~~~~~~g~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~ 493 (728)
+.++++|+.++++.+.+. . + +.... +.....+.|+|+||+|+|++. +++|+|+||+|++||++|||||
T Consensus 297 a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~ 376 (555)
T TIGR01194 297 AQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGE 376 (555)
T ss_pred HHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECC
Confidence 999999999998632111 1 0 10000 111123579999999999752 3699999999999999999999
Q ss_pred CCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhc
Q 004826 494 SGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAA 573 (728)
Q Consensus 494 SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~ 573 (728)
||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|+||++||++|+++|+ .|++++++++++++.++
T Consensus 377 sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~ 453 (555)
T TIGR01194 377 NGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLE 453 (555)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999995 46789999999999999
Q ss_pred cHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHH
Q 004826 574 IHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI 653 (728)
Q Consensus 574 l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I 653 (728)
++++++++|+||||. .+ |||||||||+||||+++||+|||||||||+||++||+.|
T Consensus 454 l~~~~~~lp~g~~t~-----~~-------------------LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i 509 (555)
T TIGR01194 454 IADKVKIEDGGFSTT-----TA-------------------LSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFF 509 (555)
T ss_pred CchhhcccccccCCc-----cc-------------------CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 999999999999994 44 999999999999999999999999999999999999999
Q ss_pred HHHHH-HH-cCCCeEEEeccCchHHhhcCeEEEEeCCEEEEE
Q 004826 654 LNALK-SL-ANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 654 ~~~L~-~l-~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~ 693 (728)
++.+. .+ .+++|+|+||||+++++.||+|+||++|+|+|.
T Consensus 510 ~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 510 YEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 98874 33 468999999999999999999999999999974
No 38
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.7e-79 Score=772.09 Aligned_cols=536 Identities=20% Similarity=0.276 Sum_probs=417.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (728)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (728)
++.++.+.++.++..++.++.|++++.++|.+.... .. .. .... .++++++ .++..++.....+..
T Consensus 300 ~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~--~~------~~-~~~~-~~~l~~~----~~~~~~~~~~~~~~~ 365 (1495)
T PLN03232 300 GGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGD--PA------WV-GYVY-AFLIFFG----VTFGVLCESQYFQNV 365 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cc------ch-HHHH-HHHHHHH----HHHHHHHHHHHHHHH
Confidence 455566666677788889999999999999764221 00 00 0000 0111111 111122222222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004826 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (728)
Q Consensus 204 ~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (728)
.+++.++...++..+|+|+++++..++++..+|++.++++.|.+.++.+.. .+..++...+.+++.+.++. +.++
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~l~----~~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVLLY----QQLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH----HHHh
Confidence 578889999999999999999999999999999999999999988887753 33444433333322222211 1223
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q 004826 284 WITSLSV---VAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQ 360 (728)
Q Consensus 284 ~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~ 360 (728)
+..++.+ ++++++...+.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~ 520 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222221 2222233344555666677777777888899999999999999999999999999887776665555554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004826 361 RSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEK 440 (728)
Q Consensus 361 ~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~ 440 (728)
...+........ ...++.++.+|++.+.+|.+|+|.++++++++..+..|+..++..+..+.++.++++|+.++++.+
T Consensus 521 ~~~~~~~~~~~~--~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 521 LLSAFNSFILNS--IPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 433332221111 112233456788888999999999999999999999999999999999999999999999999876
Q ss_pred ccccCCCCCCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEE
Q 004826 441 ADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (728)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~i 518 (728)
++..+... +.....+.|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|.+.
T Consensus 599 ~~~~~~~~--~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~- 675 (1495)
T PLN03232 599 ERILAQNP--PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV- 675 (1495)
T ss_pred cccccccC--CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE-
Confidence 54322111 11112347999999999984 46899999999999999999999999999999999999999999763
Q ss_pred CCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccch
Q 004826 519 DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRS 598 (728)
Q Consensus 519 dG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~ 598 (728)
.+|++|+||||+|+||+|||||||+||+| +++|++++|++.|+++++++.||+|+||.|||+|.+
T Consensus 676 -----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~--- 740 (1495)
T PLN03232 676 -----------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVN--- 740 (1495)
T ss_pred -----------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcc---
Confidence 46889999999999999999999999986 799999999999999999999999999999999988
Q ss_pred hHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHH-HHHHcCCCeEEEeccCchHHh
Q 004826 599 LLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLANNRTSIFIAHRLTTAM 677 (728)
Q Consensus 599 ~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~TvIvIaHRLsti~ 677 (728)
||||||||||||||+++||+||||||||||||++||+.|++. ++...++||+|+||||+++++
T Consensus 741 ----------------LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~ 804 (1495)
T PLN03232 741 ----------------ISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP 804 (1495)
T ss_pred ----------------cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH
Confidence 999999999999999999999999999999999999999865 666678999999999999999
Q ss_pred hcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 678 QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 678 ~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
.||+|++|++|+|+|+|+|+||+++++.|++++..+.
T Consensus 805 ~aD~Ii~L~~G~i~~~Gt~~eL~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 805 LMDRIILVSEGMIKEEGTFAELSKSGSLFKKLMENAG 841 (1495)
T ss_pred hCCEEEEEeCCEEEEecCHHHHHhcchhHHHHHHhcc
Confidence 9999999999999999999999999999999987653
No 39
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=3.1e-78 Score=760.84 Aligned_cols=537 Identities=22% Similarity=0.310 Sum_probs=412.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (728)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (728)
++.+++++++.++..++.++.|++++.++|.+..... . ...+. .. ++++++. +...+ ....+.+. .
T Consensus 300 ~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~--~----~~~~~--~~--~~l~~~~-~~~~~-~~~~~~~~--~ 365 (1622)
T PLN03130 300 GGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP--A----WIGYI--YA--FSIFVGV-VLGVL-CEAQYFQN--V 365 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--c----hHHHH--HH--HHHHHHH-HHHHH-HHHHHHHH--H
Confidence 4555666677777888899999999999997743210 0 00010 00 1111111 11100 11122222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004826 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (728)
Q Consensus 204 ~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (728)
.+++.++...++..+|+|+++++..++++..+|++.++++.|.+.++.+... +..++...+.+++.++++...+.+ .+
T Consensus 366 ~~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~-~~ 443 (1622)
T PLN03130 366 MRVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGV-AS 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4788899999999999999999999999999999999999999888877643 344444443333222222221111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (728)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (728)
++.++++++.+++...+.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.+++++..++..+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222233333344455556666666777788889999999999999999999999999886665444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 004826 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADI 443 (728)
Q Consensus 364 ~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~ 443 (728)
++....... ...++.++++|++.+..|.+|+|.++++++++..+..|+..++..+..+.++.++++|+.++++.++..
T Consensus 524 ~~~~~~~~~--~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 524 AFNSFILNS--IPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 222211111 112334456788888999999999999999999999999999999999999999999999999765432
Q ss_pred cCCCCCCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCC-CEEEECC
Q 004826 444 QDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDG 520 (728)
Q Consensus 444 ~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~-G~I~idG 520 (728)
..... +.....+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++ |+|.+
T Consensus 602 ~~~~~--~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-- 677 (1622)
T PLN03130 602 LLPNP--PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-- 677 (1622)
T ss_pred cccCC--cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE--
Confidence 11111 11112247999999999974 4689999999999999999999999999999999999999999 99974
Q ss_pred EeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 521 QDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 521 ~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
|++|+||||+|+||+|||||||+||+| .+++++++|++.|+++++|+.||+|+||+|||+|.+
T Consensus 678 -----------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~----- 740 (1622)
T PLN03130 678 -----------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVN----- 740 (1622)
T ss_pred -----------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCC-----
Confidence 568999999999999999999999997 689999999999999999999999999999999988
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHH-HHHHHcCCCeEEEeccCchHHhhc
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN-ALKSLANNRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~-~L~~l~~~~TvIvIaHRLsti~~a 679 (728)
|||||||||+||||+|+||+||||||||||||+++|+.|++ .++...++||+|+||||+++++.|
T Consensus 741 --------------LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~a 806 (1622)
T PLN03130 741 --------------ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQV 806 (1622)
T ss_pred --------------CCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhC
Confidence 99999999999999999999999999999999999999975 567677899999999999999999
Q ss_pred CeEEEEeCCEEEEEcChHHHhhccchHHHHHHhh
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 713 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q 713 (728)
|+|++|++|+|+|+|+|+||+++++.|++++..+
T Consensus 807 D~Ii~L~~G~i~e~Gt~~eL~~~~~~~~~l~~~~ 840 (1622)
T PLN03130 807 DRIILVHEGMIKEEGTYEELSNNGPLFQKLMENA 840 (1622)
T ss_pred CEEEEEeCCEEEEeCCHHHHHhcchhHHHHHHhc
Confidence 9999999999999999999999999999998765
No 40
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.4e-79 Score=655.57 Aligned_cols=537 Identities=26% Similarity=0.350 Sum_probs=438.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (728)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (728)
+..++...++..+..++.+..|+++-.+.|.+....+. .++..+.. .++. +..+..+++.+|..++
T Consensus 22 r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~-------~TLv~Ltv---lal~----ly~~~glLd~iR~~~l 87 (580)
T COG4618 22 RRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSV-------PTLVMLTV---LALG----LYAFQGLLDAIRSRVL 87 (580)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCc-------chHHHHHH---HHHH----HHHHHHHHHHHHHHHH
Confidence 44445555666667788889999999999998754321 22222111 1111 1224467899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004826 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSS-MVFNVVPTILEISMVSGILAYKFGAPF 282 (728)
Q Consensus 204 ~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (728)
.+++.++...+...+|....+.+..-. ..|+=..-+ +|.+.+..|++. ....++..-. .-+...++|.++|++
T Consensus 88 ~Rig~~lD~~L~~~v~~a~~~~~l~~~---~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW--~P~yl~v~fl~Hp~l 161 (580)
T COG4618 88 VRIGERLDRQLNGPVFAASFSAPLLRR---GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPW--MPLYLAVIFLFHPWL 161 (580)
T ss_pred HHHHHHHHHHhccHHHHHHHhhHHhhc---CCCccccch-hhHHHHHHHHcCCCcchhcCCch--HHHHHHHHHHHHHHH
Confidence 999999999999999999987775432 333222222 344555555543 2222222111 112233456678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 283 AWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (728)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (728)
.++.++.+++++.+.+...+..++..++..+...+.+.....+..|.++|++.|+.....++|.+.+..+.+...+..-.
T Consensus 162 G~~a~~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~ 241 (580)
T COG4618 162 GLIALAGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDR 241 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 88888877777776666555555555666666667777888889999999999999999999999998888877666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004826 363 LAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (728)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~ 442 (728)
.+.+......+-....+.++.+|+|++++|++|.|.+++-..++++...|+......|.++..+..+.+|+.+++++.|+
T Consensus 242 ~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~ 321 (580)
T COG4618 242 NGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPA 321 (580)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 55555555555555666777889999999999999999999999999999999999999999999999999999988665
Q ss_pred ccCCCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCE
Q 004826 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (728)
Q Consensus 443 ~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~ 521 (728)
..+ ..+.|.+.|.+.+|+|+|.=|+ ++|+|+|+||+++|||-+|||||||||||||.++|.|.++|++|+|++||-
T Consensus 322 ~~~---~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga 398 (580)
T COG4618 322 AAE---RMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGA 398 (580)
T ss_pred ccC---CCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecch
Confidence 322 2345555789999999997664 469999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 522 DICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 522 di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
|+++++.+.+=++|||.|||..||+|||+|||+=..+++++|.|.+||+.|+.||.|.+||+||||.|||+|..
T Consensus 399 ~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~------ 472 (580)
T COG4618 399 DLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGAT------ 472 (580)
T ss_pred hhhcCCHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCC------
Confidence 99999999999999999999999999999999766678999999999999999999999999999999999988
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcC
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCD 680 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD 680 (728)
|||||||||++|||||.||.+++||||-|+||.+-|+.+.++|...+ +|+|+|+||||.+.+..+|
T Consensus 473 -------------LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 473 -------------LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred -------------CCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 99999999999999999999999999999999999999999988764 6899999999999999999
Q ss_pred eEEEEeCCEEEEEcChHHHhhc
Q 004826 681 EIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~eLl~~ 702 (728)
+|+||++|++-..|+.+|.+++
T Consensus 540 kilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 540 KILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred eeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999875
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=1.2e-74 Score=667.75 Aligned_cols=523 Identities=17% Similarity=0.204 Sum_probs=385.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 122 EFRLRVITALGFLVAAKVLNVQ-VPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRT 200 (728)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~-~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (728)
++++.+++.+++.++..++.+. .|++.+.++|.+.. .. ..+.. + +.++++. .++.+++.
T Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~---~~------~~~~~-~---~~~~~~~-------~~~~~~~~ 69 (547)
T PRK10522 10 QYRWPFISVMALSLASAALGIGLIAFINQRLIETADT---SL------LVLPE-F---LGLLLLL-------MAVTLGSQ 69 (547)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cc------hHHHH-H---HHHHHHH-------HHHHHHHH
Confidence 3456666677776777777776 47787888886521 00 00100 0 0011111 12445677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004826 201 AVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGA 280 (728)
Q Consensus 201 ~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 280 (728)
++..+++.++..++|.++|+|++++|+++|+++++|++.+++++|.+.+...+.. +..++..++.+++ .+++++.++|
T Consensus 70 ~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~-~~~~l~~~~~ 147 (547)
T PRK10522 70 LALTTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLG-SAAYLAWLSP 147 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHhH
Confidence 8888899999999999999999999999999999999999999888877765432 3334444333322 2234455678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcch---HHHHHHHHHHHHHHHHHHH
Q 004826 281 PFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE---AFEAEQYDEFLRRYEDAAL 357 (728)
Q Consensus 281 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e---~~~~~~~~~~~~~~~~~~~ 357 (728)
.+++++++.+++.+++.....++.++..++..+..++.++.+.|.+.|+++++ ++.+ +.+.++|++..+++.+...
T Consensus 148 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (547)
T PRK10522 148 KMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHII 226 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhH
Confidence 77777666666655555555555555566666777888899999999999996 4443 4567888887777776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004826 358 KTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLL 437 (728)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll 437 (728)
+..+.......+..++......+.+++++.. +..+.+.+.++..+...+..|+..+...+.+++++..+.+|+.+++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~ 303 (547)
T PRK10522 227 RADTFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLA 303 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544333322222111111111112222211 2234444444444555677899999999999999999999999997
Q ss_pred cccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEE
Q 004826 438 EEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (728)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~ 517 (728)
+.+++.+... ..+.+ ..+.|+|+||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 304 ~~~~~~~~~~-~~~~~-~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 304 LAPYKAEFPR-PQAFP-DWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred cccccccccc-ccccC-cCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 6543221111 11111 135799999999998667899999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccc
Q 004826 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGR 597 (728)
Q Consensus 518 idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~ 597 (728)
+||+|+++++.+++|++|+|||||+++|++|++|| + +++++++++++++.+++++++. +|+|. .+|.+
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~-- 449 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLK-- 449 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCC--
Confidence 99999999999999999999999999999999999 3 4678888888888877776654 24442 14766
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT 675 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst 675 (728)
|||||||||+||||+++||+|||||||||+||+++|+.|.+.+.+.. +++|+|+||||+++
T Consensus 450 -----------------LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~ 512 (547)
T PRK10522 450 -----------------LSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHY 512 (547)
T ss_pred -----------------CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHH
Confidence 99999999999999999999999999999999999999999987654 48999999999999
Q ss_pred HhhcCeEEEEeCCEEEEE-cChHHHhh
Q 004826 676 AMQCDEIIVLENGKVIEQ-GSHDDLLT 701 (728)
Q Consensus 676 i~~aD~IiVld~G~Ive~-Gth~eLl~ 701 (728)
++.||+|++|++|+++|. |+|.+-..
T Consensus 513 ~~~~d~i~~l~~G~i~e~~~~~~~~~~ 539 (547)
T PRK10522 513 FIHADRLLEMRNGQLSELTGEERDAAS 539 (547)
T ss_pred HHhCCEEEEEECCEEEEecCCchhhhh
Confidence 999999999999999987 66655443
No 42
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.8e-71 Score=698.58 Aligned_cols=550 Identities=21% Similarity=0.295 Sum_probs=418.3
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 004826 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (728)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (728)
+.++.+++.+ ++.++..+++.++..++.++.|++++.++|.+...... .....++ .+++++ .
T Consensus 306 sl~~~l~~~~--------~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-------~~~g~~~--~~~~~~-~ 367 (1522)
T TIGR00957 306 SLFKVLYKTF--------GPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAP-------DWQGYFY--TGLLFV-C 367 (1522)
T ss_pred cHHHHHHHHH--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-------cchHHHH--HHHHHH-H
Confidence 4555555544 34555666667778889999999999999987432110 0000000 011111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004826 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (728)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (728)
. ++..++.....+...+++.++...++..+|+|+++++..++++..+|++.++++.|.+.+..+.. .+..++...+
T Consensus 368 ~---~~~~~~~~~~~~~~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~ 443 (1522)
T TIGR00957 368 A---CLQTLILHQYFHICFVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPL 443 (1522)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHH
Confidence 1 11223333344556788999999999999999999999999999999999999998887766543 2334444444
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 004826 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (728)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~ 345 (728)
.+++.+.++....++ .++..++++++++++...+.+..++..++..+..++..+.+.|.++|+++||++++|+.+.+++
T Consensus 444 ~i~~~~~ll~~~~g~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i 522 (1522)
T TIGR00957 444 QVILALYFLWLNLGP-SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKV 522 (1522)
T ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333333222222221 2222233334444445555566666777777777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILS--GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRET 423 (728)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~--g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~ 423 (728)
++..++..+...+.......... .. .....++.++.++.+.+.. +.++.+..++.++++..+..|+..++..+..+
T Consensus 523 ~~~r~~e~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~ 600 (1522)
T TIGR00957 523 EGIRQEELKVLKKSAYLHAVGTF-TW-VCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSI 600 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88766655443333322222111 11 1111222223355566653 57899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccccccCCCCCCCCC-CCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHH
Q 004826 424 VQSLVDMKSMFQLLEEKADIQDRDNAMPLN-LKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTI 501 (728)
Q Consensus 424 ~~a~~s~~rl~~ll~~~~~~~~~~~~~~~~-~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL 501 (728)
+++..+++|+.++++.+++..+........ ...+.|+++|++|+|++ ++++|+|+||+|++||+++||||||||||||
T Consensus 601 ~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTL 680 (1522)
T TIGR00957 601 VQASVSLKRLRIFLSHEELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSL 680 (1522)
T ss_pred HHHHHHHHHHHHHHcCcccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 999999999999997654321110001111 11237999999999985 4689999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhC
Q 004826 502 LRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNF 581 (728)
Q Consensus 502 ~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~L 581 (728)
+++|+|+++|++|+|.+|| +|+||||+|++|++||+|||.+|.+ .++++..++++.|++.+++..+
T Consensus 681 l~~l~g~~~~~~G~i~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~ 746 (1522)
T TIGR00957 681 LSALLAEMDKVEGHVHMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEIL 746 (1522)
T ss_pred HHHHhCCCccCCcEEEECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhc
Confidence 9999999999999999998 5999999999999999999999986 6778889999999999999999
Q ss_pred CCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHH--
Q 004826 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS-- 659 (728)
Q Consensus 582 P~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~-- 659 (728)
|+|+||.+||+|.+ |||||||||+||||++++|+|+|||||||+||+++++.|++.+.+
T Consensus 747 ~~g~~t~ig~~g~~-------------------LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~ 807 (1522)
T TIGR00957 747 PSGDRTEIGEKGVN-------------------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE 807 (1522)
T ss_pred CCCCCceecCCCCC-------------------CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh
Confidence 99999999999988 999999999999999999999999999999999999999999853
Q ss_pred -HcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhh
Q 004826 660 -LANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQ 713 (728)
Q Consensus 660 -l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q 713 (728)
+.+++|+|+|||+++.++.||+|++|++|+|+++|+|+||+++++.|.+++..+
T Consensus 808 ~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 808 GVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred hhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhcchhHHHHHHhh
Confidence 457899999999999999999999999999999999999999999999988744
No 43
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.3e-71 Score=665.94 Aligned_cols=537 Identities=23% Similarity=0.320 Sum_probs=421.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (728)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (728)
++.+++..++..+......+.|.+++.+++.+.... .. ..+..+++ +++.+...+.+++.....+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~--~~--~~~g~~~a---------~~lf~~~~l~~l~~~~~~~~~ 266 (1381)
T KOG0054|consen 200 GRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKR--LP--LNNGYLLA---------VLLFLASLLQSLLLHQYFFVS 266 (1381)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCC--cc--cchhHHHH---------HHHHHHHHHHHHHHhHHHHHH
Confidence 344555555555555668889999999999875321 10 00111111 111122233344544455567
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004826 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (728)
Q Consensus 204 ~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (728)
.+++.|+...+...+|+|.++++...-....+|++.+.++.|...+..+... +..++...+.+++.+.++...+++ -+
T Consensus 267 ~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~-sa 344 (1381)
T KOG0054|consen 267 FRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGP-SA 344 (1381)
T ss_pred HhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCh-HH
Confidence 7899999999999999999999988878889999999999998888776543 344454555555444444444443 23
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (728)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (728)
+..++++++++.+..++.+..++++++..+..++......|.++||++||.|+||+.+.++.++.-++-.+. -+..
T Consensus 345 ~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~----lrk~ 420 (1381)
T KOG0054|consen 345 LAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKL----LRKS 420 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHH----HHHH
Confidence 444445555666677777777888887777777788899999999999999999999888887754433333 3333
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 004826 364 AFLNFGQNVI--FSAALSTAMVLCSHG-ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEK 440 (728)
Q Consensus 364 ~~~~~~~~~i--~~~~~~~~l~~g~~~-v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~ 440 (728)
+....+..++ ....++.++.++++. ...+.+|....++.++++..+..|+..++..+..+.++.++++|+.+++..+
T Consensus 421 ~~~~~~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~ 500 (1381)
T KOG0054|consen 421 AYLSALNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSE 500 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3332222222 222333334455555 4567889888999999999999999999999999999999999999999775
Q ss_pred ccccCCCCCCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEE
Q 004826 441 ADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (728)
Q Consensus 441 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~i 518 (728)
+...+.....+.......|+++|.+|++++ ..|.|+||||+|++|+.+||||+.|||||+|+..|+|..+..+|+|.+
T Consensus 501 e~~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v 580 (1381)
T KOG0054|consen 501 ELDPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAV 580 (1381)
T ss_pred ccCccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEE
Confidence 432221111122223347999999999985 346999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccch
Q 004826 519 DGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRS 598 (728)
Q Consensus 519 dG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~ 598 (728)
+| .+|||||+||||||||||||.||.| .+++...++.+.|++.++++.||.|..|+|||+|.+
T Consensus 581 ~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGin--- 643 (1381)
T KOG0054|consen 581 NG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGIN--- 643 (1381)
T ss_pred cC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccC---
Confidence 99 4999999999999999999999997 889999999999999999999999999999999988
Q ss_pred hHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHH-HHHHcCCCeEEEeccCchHHh
Q 004826 599 LLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLANNRTSIFIAHRLTTAM 677 (728)
Q Consensus 599 ~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~TvIvIaHRLsti~ 677 (728)
|||||||||+||||+|+|++|++||+|.||+|+++.+.|++. |+.+.++||+|+|||.++.++
T Consensus 644 ----------------LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~ 707 (1381)
T KOG0054|consen 644 ----------------LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP 707 (1381)
T ss_pred ----------------CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh
Confidence 999999999999999999999999999999999999999964 777889999999999999999
Q ss_pred hcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHh
Q 004826 678 QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 712 (728)
Q Consensus 678 ~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~ 712 (728)
+||+|+||++|+|+|+|+|+||++.++.|.++...
T Consensus 708 ~ad~Iivl~~G~I~~~Gty~el~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 708 HADQIIVLKDGKIVESGTYEELLKSGGDFAELAHE 742 (1381)
T ss_pred hCCEEEEecCCeEecccCHHHHHhcchhHHHHhhc
Confidence 99999999999999999999999999999998543
No 44
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=7.8e-71 Score=645.93 Aligned_cols=537 Identities=17% Similarity=0.149 Sum_probs=419.6
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 004826 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (728)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (728)
.+.++++++|+++....+-+..+++.++++++.+++.+.+|++.+.++|.+..... . .+...++.++++++
T Consensus 76 ~~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~--~------~f~~~l~~~~l~~~- 146 (659)
T TIGR00954 76 LGKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSP--R------NFAWILFKWFLIAP- 146 (659)
T ss_pred HHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH--H------HHHHHHHHHHHHHH-
Confidence 34466677777632111112256677777778889999999999999998763211 0 01000111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004826 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (728)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (728)
+..++..+..+++.++...+..++..+++.+.|++....++.||++ ++|++.+++++|.+.+...+...+..++..+
T Consensus 147 --~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~ 223 (659)
T TIGR00954 147 --PASFINSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPI 223 (659)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222345667778888899999999999999999999999999987 7899999999999988887777777777666
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 004826 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (728)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~ 344 (728)
+.++..++.++...+|.+++++++.+++..++...+.+...+..++.++..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 224 ~~ii~~~~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~ 303 (659)
T TIGR00954 224 LDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKET 303 (659)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHH
Confidence 65554444343335666666665655666666666666666777777788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHh-c----CCcCHHHHHH-HHHH---HHHHHHHH
Q 004826 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALS-T-AMVLCSHGIL-S----GEMTVGDLVM-VNGL---LFQLSLPL 413 (728)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~-~l~~g~~~v~-~----g~lt~G~l~a-~~~~---~~~l~~pl 413 (728)
|++..+++.+...+..+..+...++..++...... + .++.|...+. . |.+|+|++++ |+.+ +.++..|+
T Consensus 304 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~ 383 (659)
T TIGR00954 304 VMSSFYRLVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADAL 383 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888877777666555332212 2 2223332222 2 7899998776 5544 56779999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccCC--------C--CC-------------CCCCCCCceEEEEEEEEEecC
Q 004826 414 NFLGSVYRETVQSLVDMKSMFQLLEEKADIQDR--------D--NA-------------MPLNLKGGSIQFDNVHFSYLT 470 (728)
Q Consensus 414 ~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~~--------~--~~-------------~~~~~~~g~I~f~nVsF~Y~~ 470 (728)
..+...+.+++++.++.+|++++++.+++..+. . .. .......+.|+++||+|+|++
T Consensus 384 ~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~ 463 (659)
T TIGR00954 384 GRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN 463 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC
Confidence 999999999999999999999999765432110 0 00 001112356999999999986
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHH
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 550 (728)
++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+|+ |++|+||||+|++|++|++
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~ 532 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLR 532 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHH
Confidence 66899999999999999999999999999999999999999999999874 6789999999999999999
Q ss_pred HHHHcCC-------CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHH
Q 004826 551 HNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRV 623 (728)
Q Consensus 551 eNI~~g~-------~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRI 623 (728)
|||.++. ++.++++++++++.++++++++. |.||||..++ +.. ||||||||+
T Consensus 533 eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~~-~~~-------------------LSgGqkQRl 591 (659)
T TIGR00954 533 DQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQDW-MDV-------------------LSGGEKQRI 591 (659)
T ss_pred HHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCccccccc-ccC-------------------CCHHHHHHH
Confidence 9999974 45678999999999999999988 9999999875 445 999999999
Q ss_pred HHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeC
Q 004826 624 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 624 aIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
+|||||+++|++||||||||+||+++|+.+.+.+++ .++|+|+||||+++++.||+|++|+.
T Consensus 592 ~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~--~~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 592 AMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH--cCCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999987 38999999999999999999999973
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=4.4e-67 Score=658.68 Aligned_cols=533 Identities=19% Similarity=0.238 Sum_probs=410.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 124 RLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVF 203 (728)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (728)
++.+++..++.++..++.++.|++++.+++.+... .... . .....+ .+++++ +.++..++.....+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~-~~~~---~-~~~~~l---~~~~~~----~~~~~~l~~~~~~~~~ 146 (1490)
T TIGR01271 79 FWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPF-NAPE---R-EIAYYL---ALGLCL----LFIVRTLLLHPAIFGL 146 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCc---h-hHHHHH---HHHHHH----HHHHHHHHHHHHHHHH
Confidence 44455555556677788899999999999986311 1100 0 000000 011111 1112233444555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 004826 204 SKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFA 283 (728)
Q Consensus 204 ~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~ 283 (728)
.+++.++...+...+|+|+++++...+++..+|++.++++.|++.+....... ..++...+.+++.+++++..++| .+
T Consensus 147 ~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~-~~ 224 (1490)
T TIGR01271 147 HHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEV-NG 224 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 77888999999999999999999999999999999999999988887765432 33334334343333344333332 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 284 WITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSL 363 (728)
Q Consensus 284 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (728)
++.++++++++++..++.++..+.+++..+..++....+.|.++||++||.|++|+.+.+++++..++..+...+.....
T Consensus 225 l~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~ 304 (1490)
T TIGR01271 225 FCGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLR 304 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555566666677777777777888888899999999999999999999999888876655444433333322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004826 364 AFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLN-FLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (728)
Q Consensus 364 ~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~-~l~~~~~~~~~a~~s~~rl~~ll~~~~~ 442 (728)
....... .....++.++.+++|.+..+ ++++.++++++++..+..|+. .++..+..+.++.++++||.++|+.++.
T Consensus 305 ~~~~~~~--~~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~ 381 (1490)
T TIGR01271 305 YFYSSAF--FFSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEY 381 (1490)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 2211111 12223334445666766654 789999999999999989974 7999999999999999999999976543
Q ss_pred ccCCCCCCCCCCCCceEEEEEEEEEecC---------------------------------CceeeeeeeEEEeCCcEEE
Q 004826 443 IQDRDNAMPLNLKGGSIQFDNVHFSYLT---------------------------------ERKILDGVSFVVPAGKSVA 489 (728)
Q Consensus 443 ~~~~~~~~~~~~~~g~I~f~nVsF~Y~~---------------------------------~~~vL~~isl~I~~Ge~vA 489 (728)
..... . .....|+++|++|.|+. .+++|+|+||+|++||.++
T Consensus 382 ~~~~~---~--~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~ 456 (1490)
T TIGR01271 382 KTLEY---N--LTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLA 456 (1490)
T ss_pred ccccc---c--CCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEE
Confidence 21110 0 11235999999999952 1368999999999999999
Q ss_pred EECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHH
Q 004826 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAA 569 (728)
Q Consensus 490 IVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~ 569 (728)
|+||+|||||||+++|+|+++|++|+|.+|| +|+||||+|+||++||+|||.||.+ .++++..+++
T Consensus 457 I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~ 522 (1490)
T TIGR01271 457 VAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVI 522 (1490)
T ss_pred EECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHH
Confidence 9999999999999999999999999999998 5999999999999999999999975 5667788888
Q ss_pred HHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHH
Q 004826 570 RRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT 649 (728)
Q Consensus 570 ~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~t 649 (728)
+.|++++++..+|+|++|.|||+|.+ |||||||||+||||++++|+|+||||||||||+++
T Consensus 523 ~~~~L~~~l~~l~~g~~t~vg~~g~~-------------------LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~ 583 (1490)
T TIGR01271 523 KACQLEEDIALFPEKDKTVLGEGGIT-------------------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583 (1490)
T ss_pred HHHhHHHHHHhccccccccccCcCCC-------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 99999999999999999999999988 99999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHH
Q 004826 650 EAEILNA-LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 650 E~~I~~~-L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
++.|++. +.++.+++|+|+|||+++.++.||+|++|++|+|++.|+|+|+.+.++.|.+++.
T Consensus 584 ~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 584 EKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 9999985 6777789999999999999999999999999999999999999988788877763
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=7.2e-65 Score=639.08 Aligned_cols=549 Identities=21% Similarity=0.294 Sum_probs=416.4
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 004826 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (728)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (728)
.+.++.+++.+ ++.++..+++.++..++.++.|++++.+++.+.... . .+...+. ++++
T Consensus 232 ~~l~~~l~~~~--------~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~--~------~~~~g~~-----l~~~ 290 (1560)
T PTZ00243 232 LSLLRTLFAAL--------PYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADN--A------TWGRGLG-----LVLT 290 (1560)
T ss_pred cHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--c------chhHHHH-----HHHH
Confidence 45566666544 455566677777888999999999999998763211 1 0000000 0111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 004826 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHL--SRETGALNRIIDRGSRAINFILSSMVFNVVP 262 (728)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~--~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~ 262 (728)
+.+..++..++...+.+...+.+.++...+...+|+|+++++...+. +..+|++.++++.|.+.+..++.. +..++.
T Consensus 291 l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~ 369 (1560)
T PTZ00243 291 LFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQY-CMYLWS 369 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHH
Confidence 11122233455666677788999999999999999999999987765 568899999999999888877644 334444
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHH
Q 004826 263 TILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEA 342 (728)
Q Consensus 263 ~~~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~ 342 (728)
..+.+++.++++....+| .+++.++++++.+++..++.++..+.+++..+..++....+.|.++||++||.+++|+.+.
T Consensus 370 ~Pl~li~~~~lL~~~lG~-~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~ 448 (1560)
T PTZ00243 370 SPMVLLLSILLLSRLVGW-CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFV 448 (1560)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444333332 3333334444444455556666666777777777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 343 EQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRE 422 (728)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~ 422 (728)
+++++..++..+...+......+...+... ...+..++.+++|.+..|.+|+|.+++++.++..+..|+..++..+..
T Consensus 449 ~ri~~~R~~El~~l~~~~~~~~~~~~~~~~--~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~ 526 (1560)
T PTZ00243 449 ANIEDKRARELRYLRDVQLARVATSFVNNA--TPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTT 526 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999886655544433333333222222111 112223335677888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccc-------cCC--------C--C--------------C--CC------------------
Q 004826 423 TVQSLVDMKSMFQLLEEKADI-------QDR--------D--N--------------A--MP------------------ 451 (728)
Q Consensus 423 ~~~a~~s~~rl~~ll~~~~~~-------~~~--------~--~--------------~--~~------------------ 451 (728)
+.++.++++||.++|+.++.. .+. . . + .+
T Consensus 527 ~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (1560)
T PTZ00243 527 VLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLC 606 (1560)
T ss_pred HHHHHHHHHHHHHHHcCccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence 999999999999999765310 000 0 0 0 00
Q ss_pred -------CCCCCceEEEEEEEEEec---------------------------------------CCceeeeeeeEEEeCC
Q 004826 452 -------LNLKGGSIQFDNVHFSYL---------------------------------------TERKILDGVSFVVPAG 485 (728)
Q Consensus 452 -------~~~~~g~I~f~nVsF~Y~---------------------------------------~~~~vL~~isl~I~~G 485 (728)
.+...+.+.++|++|+++ +++++|+|+||+|++|
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G 686 (1560)
T PTZ00243 607 CEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRG 686 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCC
Confidence 000113577888888643 1346899999999999
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHH
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEV 565 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei 565 (728)
|+++|+||||||||||+++|+|+++|++|+|.++ ++|+||||+|++|++||+|||.++.+ .+++++
T Consensus 687 ~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~ 752 (1560)
T PTZ00243 687 KLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARL 752 (1560)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHH
Confidence 9999999999999999999999999999999864 47999999999999999999999975 456678
Q ss_pred HHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCC
Q 004826 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSAL 645 (728)
Q Consensus 566 ~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaL 645 (728)
.++++.++++++++.+|+|++|.+||+|.+ |||||||||+||||++.+|+|||||||||+|
T Consensus 753 ~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~-------------------LSGGQkqRvaLARAl~~~p~illLDEP~saL 813 (1560)
T PTZ00243 753 ADAVRVSQLEADLAQLGGGLETEIGEKGVN-------------------LSGGQKARVSLARAVYANRDVYLLDDPLSAL 813 (1560)
T ss_pred HHHHHHhhhHHHHHHhhccchHHhcCCCCC-------------------CCHHHHHHHHHHHHHhcCCCEEEEcCccccC
Confidence 889999999999999999999999999988 9999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-HHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHh
Q 004826 646 DSTTEAEILNA-LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQ 712 (728)
Q Consensus 646 D~~tE~~I~~~-L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~ 712 (728)
|+++++.+++. +....+++|+|+|||+++.++.||+|++|++|+|+++|+|+|+++. +.|.++...
T Consensus 814 D~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 814 DAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred CHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 99999998875 4445578999999999999999999999999999999999999874 568777654
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=2.4e-57 Score=477.80 Aligned_cols=236 Identities=31% Similarity=0.519 Sum_probs=223.6
Q ss_pred ceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
|.|+|+||+|+|++ ++++|+|+||+|++||+++|||+||||||||+++|+|+++ ++|+|++||+++..++..++|+.|
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 46999999999973 5679999999999999999999999999999999999998 899999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+||||++.+|++|++|||.+..+ .++++++++++.+++++++.++|+||||.++|+|.+ |
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~-------------------L 139 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCV-------------------L 139 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCC-------------------C
Confidence 99999999999999999975443 578899999999999999999999999999999987 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcC
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gt 695 (728)
|||||||++||||++++|+||||||||++||+.+.+.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+
T Consensus 140 S~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 140 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDS 219 (275)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHHHhh
Q 004826 696 HDDLLTKAGRYAQLWGQQ 713 (728)
Q Consensus 696 h~eLl~~~g~Y~~l~~~q 713 (728)
+++|++.++.|++++...
T Consensus 220 ~~~l~~~~~~~~~~~~~~ 237 (275)
T cd03289 220 IQKLLNEKSHFKQAISPS 237 (275)
T ss_pred HHHHhhCcHHHHHHHhhc
Confidence 999999888888887654
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-53 Score=459.21 Aligned_cols=224 Identities=29% Similarity=0.473 Sum_probs=199.7
Q ss_pred CCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCC--C
Q 004826 454 LKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDIC--E 525 (728)
Q Consensus 454 ~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~--~ 525 (728)
+..+.|+|+||+|+|++ .+++|+|+||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+. +
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred CcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34568999999999974 4589999999999999999999999999999999999997 57999999999997 4
Q ss_pred CCHHHHhcceEEEcCCCCCCcccHHHHHHcCCC--CCCHHHH-----HHHHHHhccHHHHHhCCCcccchhhccccccch
Q 004826 526 VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEEEV-----YDAARRAAIHDTIMNFPAKYSTVVGERGLKGRS 598 (728)
Q Consensus 526 i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~sdeei-----~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~ 598 (728)
++...+|+.++||||+|++|++||+|||.|+.. ..++++. .++++.+++ ++++++.++++|.+
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~--- 225 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNA--- 225 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCccc---
Confidence 566789999999999999999999999998742 2444544 444555554 45567889999988
Q ss_pred hHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh
Q 004826 599 LLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ 678 (728)
Q Consensus 599 ~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~ 678 (728)
||||||||++||||++++|+|||||||||+||+++.+.+++.|+++.+++|+|+|||++.++..
T Consensus 226 ----------------LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~ 289 (329)
T PRK14257 226 ----------------LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQR 289 (329)
T ss_pred ----------------CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999889999999999999988
Q ss_pred -cCeEEEEeCCEEEEEcChHHHhhcc
Q 004826 679 -CDEIIVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 679 -aD~IiVld~G~Ive~Gth~eLl~~~ 703 (728)
||+|+||++|+|+|.|+++++....
T Consensus 290 ~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 290 ISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred hCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999999999999999999998643
No 49
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=9.8e-52 Score=427.49 Aligned_cols=235 Identities=45% Similarity=0.721 Sum_probs=220.7
Q ss_pred EEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 459 IQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
|+++||+++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 579999999974 4679999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
|||++.+|+.|++|||.++.+..+.+++.++++..+++++++.+|.|+++........ |||
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-------------------LSg 141 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAG-------------------LSG 141 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCc-------------------CCH
Confidence 9999999999999999997665567778888888999999999999999998887766 999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChH
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~ 697 (728)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+++
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~ 221 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHD 221 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999987889999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHh
Q 004826 698 DLLTKAGRYAQLWGQ 712 (728)
Q Consensus 698 eLl~~~g~Y~~l~~~ 712 (728)
++++..+.|+.++..
T Consensus 222 ~~~~~~~~~~~~~~~ 236 (237)
T cd03252 222 ELLAENGLYAYLYQL 236 (237)
T ss_pred HHHhccChHHHHHhc
Confidence 999999999888753
No 50
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.9e-52 Score=403.66 Aligned_cols=215 Identities=35% Similarity=0.603 Sum_probs=191.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC-CCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~-~i~~~~lR~~Ia 536 (728)
-|+++||+.+|. +..||+||||+|++||.++|+||||||||||++.|.+|-+|++|+|.+||.++. +.+...+|+++|
T Consensus 2 mi~i~~l~K~fg-~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFG-DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeC-CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 489999999996 568999999999999999999999999999999999999999999999998763 348999999999
Q ss_pred EEcCCCCCCc-ccHHHHHHcCCC---CCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~---~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+|+|+..||. -|+.|||+++.- ..+.+ .-.+.++++++.|-....|.
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~------------------------- 135 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPA------------------------- 135 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcc-------------------------
Confidence 9999999995 699999998841 22332 23455677788777777663
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
+|||||+||+||||||.-+|+++++|||||||||+.-..+.+.++.+. .|.|.|+|||-+...++ ||||+.||
T Consensus 136 -----qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd 210 (240)
T COG1126 136 -----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMD 210 (240)
T ss_pred -----ccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEee
Confidence 299999999999999999999999999999999999999999998876 57999999999999988 89999999
Q ss_pred CCEEEEEcChHHHhhcc
Q 004826 687 NGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~ 703 (728)
+|+|+|+|+++++..+.
T Consensus 211 ~G~iie~g~p~~~f~~p 227 (240)
T COG1126 211 QGKIIEEGPPEEFFDNP 227 (240)
T ss_pred CCEEEEecCHHHHhcCC
Confidence 99999999999998753
No 51
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1e-50 Score=425.07 Aligned_cols=239 Identities=32% Similarity=0.546 Sum_probs=222.3
Q ss_pred CCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 004826 455 KGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (728)
Q Consensus 455 ~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 533 (728)
..+.|+++||+++|++. +++|+|+||+|+|||.+||+|+||||||||+++|+|+++|++|+|++||.++.+.+...+|+
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35689999999999753 57999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 534 ~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
.|+||+|++.+|++|++||+.+... ..+++++++++.+++++++..+|.|++|.+++.+..
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~------------------ 156 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGEN------------------ 156 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCc------------------
Confidence 9999999999999999999976542 356778899999999999999999999999998877
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~ 693 (728)
||||||||++|||||+++|++|||||||++||+++++.+.+.++++.+++|+|++||+++.+..||+|++|++|+|++.
T Consensus 157 -LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~ 235 (257)
T cd03288 157 -FSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVEC 235 (257)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988788999999999999999999999999999999
Q ss_pred cChHHHhhc-cchHHHHHHhh
Q 004826 694 GSHDDLLTK-AGRYAQLWGQQ 713 (728)
Q Consensus 694 Gth~eLl~~-~g~Y~~l~~~q 713 (728)
|+++++++. ++.|+++|..|
T Consensus 236 g~~~~~~~~~~~~~~~~~~~~ 256 (257)
T cd03288 236 DTPENLLAQEDGVFASLVRTD 256 (257)
T ss_pred CCHHHHHhccchHHHHHHhcc
Confidence 999999875 57788887654
No 52
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-50 Score=418.09 Aligned_cols=235 Identities=66% Similarity=1.019 Sum_probs=221.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 57999999997556799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
+|++.+|++|++||+.++.+..+++++.++++.+++.+.+..+|.|+++.+...... ||||
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~-------------------LS~G 141 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK-------------------LSGG 141 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc-------------------CCHH
Confidence 999999999999999998766677788888999999999999999999999888766 9999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHH
Q 004826 619 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDD 698 (728)
Q Consensus 619 QrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~e 698 (728)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.++
T Consensus 142 ~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~ 221 (236)
T cd03253 142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEE 221 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHH
Confidence 99999999999999999999999999999999999999998877899999999999999999999999999999999999
Q ss_pred HhhccchHHHHHHh
Q 004826 699 LLTKAGRYAQLWGQ 712 (728)
Q Consensus 699 Ll~~~g~Y~~l~~~ 712 (728)
+.+..+.|+.++..
T Consensus 222 ~~~~~~~~~~~~~~ 235 (236)
T cd03253 222 LLAKGGLYAEMWKA 235 (236)
T ss_pred HhhcccHHHHHHhc
Confidence 99888888877764
No 53
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6e-51 Score=416.70 Aligned_cols=223 Identities=36% Similarity=0.611 Sum_probs=192.8
Q ss_pred EEEEEEEEEecC----CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHH
Q 004826 459 IQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESL 531 (728)
Q Consensus 459 I~f~nVsF~Y~~----~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~---~~~l 531 (728)
|+|+||++.|+. ...+|+||||+|++||+.+|||+||+|||||++++.+|-.|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 899999999985 247999999999999999999999999999999999999999999999998888777 5567
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~-gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|++|||++|++.|++ .|+.|||+|.-. ..+. +.+.+.++.+++.|.-.+-|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP---------------------- 139 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYP---------------------- 139 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCc----------------------
Confidence 789999999999998 899999998642 2233 34566677777776655544
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCe
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~ 681 (728)
.+||||||||++|||||..+|+||+.|||||||||+|.+.|.+-|++.. -|-|+++|||-++.+++ |||
T Consensus 140 --------~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~r 211 (339)
T COG1135 140 --------AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDR 211 (339)
T ss_pred --------hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhh
Confidence 3399999999999999999999999999999999999999999988653 57999999999999988 999
Q ss_pred EEEEeCCEEEEEcChHHHhhcc--chHHHHHH
Q 004826 682 IIVLENGKVIEQGSHDDLLTKA--GRYAQLWG 711 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~~--g~Y~~l~~ 711 (728)
+.|||+|+|||+|+-.|+.... ..-+++..
T Consensus 212 Vavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~ 243 (339)
T COG1135 212 VAVLDQGRLVEEGTVSEVFANPKHAITQEFIG 243 (339)
T ss_pred heEeeCCEEEEeccHHHhhcCcchHHHHHHHH
Confidence 9999999999999998887653 33344544
No 54
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-50 Score=412.78 Aligned_cols=228 Identities=52% Similarity=0.828 Sum_probs=214.3
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
++|+++|++|+|++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 ~~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred CeEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 36899999999975567999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
|++|++.+|.+|++||+.++.+...++++.++++..++.++++.+|.|+++.++..... ||
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------LS 141 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN-------------------LS 141 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCc-------------------CC
Confidence 99999999999999999998766667788889999999999999999999998887766 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcCh
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 696 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth 696 (728)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||.++.++.||+|++|++|++++.|+.
T Consensus 142 ~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 142 QGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTH 221 (229)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999998778999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 004826 697 DDLLTKA 703 (728)
Q Consensus 697 ~eLl~~~ 703 (728)
++++++.
T Consensus 222 ~~~~~~~ 228 (229)
T cd03254 222 DELLAKK 228 (229)
T ss_pred HHHHhhC
Confidence 8887654
No 55
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-50 Score=411.86 Aligned_cols=232 Identities=54% Similarity=0.873 Sum_probs=216.5
Q ss_pred EEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
|+++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5799999999743 379999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
++|++.+|+.|++||+.++.+..+.+++.++++..+++++++.+|.|+++.++..... |||
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-------------------LS~ 141 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVK-------------------LSG 141 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCc-------------------CCH
Confidence 9999999999999999998766667778888888899999999999999998877766 999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChH
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~ 697 (728)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+.+
T Consensus 142 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~ 221 (234)
T cd03251 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHE 221 (234)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhccchHHHH
Q 004826 698 DLLTKAGRYAQL 709 (728)
Q Consensus 698 eLl~~~g~Y~~l 709 (728)
++.+..+.|+.+
T Consensus 222 ~~~~~~~~~~~~ 233 (234)
T cd03251 222 ELLAQGGVYAKL 233 (234)
T ss_pred HHHHcCcchhhh
Confidence 998887777653
No 56
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-50 Score=392.55 Aligned_cols=218 Identities=32% Similarity=0.529 Sum_probs=198.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCC-----CEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-----GSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~-----G~I~idG~di~~--i~~~~ 530 (728)
.++++|++|.|. ++.+|+|||++|++++.+|++|||||||||+++.+.|+.+..+ |+|.+||+||.+ ++.-.
T Consensus 7 ~~~~~~l~~yYg-~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYG-DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEEC-chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 589999999996 6789999999999999999999999999999999999999987 999999999988 57999
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC------CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~------~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
||++||+|+|.|.-|..||+||++||-. ..-||-++++++.|+++|-+... +.+.+..
T Consensus 86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr-------L~~sa~~--------- 149 (253)
T COG1117 86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR-------LHKSALG--------- 149 (253)
T ss_pred HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH-------hhCCccC---------
Confidence 9999999999999999999999999942 12245589999999999987642 3445655
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHH-hhcCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA-MQCDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti-~~aD~Ii 683 (728)
|||||+||+||||||.-+|+||+||||||||||.+..+|.+.|.++.++-|+|+|||.+... +-+|+..
T Consensus 150 ----------LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 150 ----------LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred ----------CChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999865 5699999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
.|-.|++||.|+-+++-.+
T Consensus 220 Ff~~G~LvE~g~T~~iF~~ 238 (253)
T COG1117 220 FFYLGELVEFGPTDKIFTN 238 (253)
T ss_pred hhcccEEEEEcCHHhhhcC
Confidence 9999999999999888754
No 57
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-50 Score=400.72 Aligned_cols=214 Identities=33% Similarity=0.565 Sum_probs=190.2
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+|+|||+.|. ++.+++|+||+|++||.+.++|||||||||++|+|.||++|++|+|+|||.|+++++...||++||||
T Consensus 2 I~~~nvsk~y~-~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYG-NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcC-CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 79999999996 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-cccHHHHHHcCC--CCCCH----HHHHHHHHHhccH--HHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 539 PQDTVLF-NDTIFHNIRYGR--LSATE----EEVYDAARRAAIH--DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~--~~~sd----eei~~A~~~a~l~--~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
-|..-|| +-||.|||++-- ...+. +++.+-++..+++ +|..+.|+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-------------------------- 134 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-------------------------- 134 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch--------------------------
Confidence 9999999 569999998742 12343 4455666666664 35555442
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchH-HhhcCeEEEEe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTT-AMQCDEIIVLE 686 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLst-i~~aD~IiVld 686 (728)
.|||||+||+.+||||..+|+||++|||.|||||.|...+|+-+.++.+ ++|+|+|||.+.. ++-||||.||+
T Consensus 135 ----eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~ 210 (309)
T COG1125 135 ----ELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD 210 (309)
T ss_pred ----hcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEec
Confidence 2999999999999999999999999999999999999999998876643 7999999999975 67799999999
Q ss_pred CCEEEEEcChHHHhhcc
Q 004826 687 NGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~ 703 (728)
+|+|++.|+++|++++.
T Consensus 211 ~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 211 AGEIVQYDTPDEILANP 227 (309)
T ss_pred CCeEEEeCCHHHHHhCc
Confidence 99999999999999863
No 58
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.2e-49 Score=405.51 Aligned_cols=219 Identities=41% Similarity=0.633 Sum_probs=207.5
Q ss_pred ceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
|.|+++|++|+|++ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred CcEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 46899999999974 35899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+|++|++.+|++|++|||.+..+ .+.+++.++++..++.+++..+|.|++|.+++.... |
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~-------------------L 140 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGEN-------------------L 140 (221)
T ss_pred EEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCc-------------------C
Confidence 99999999999999999987754 567889999999999999999999999999888877 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcC
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gt 695 (728)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||+|++|++|++++.|+
T Consensus 141 S~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 141 SVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999999999877899999999999999999999999999999886
No 59
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.3e-49 Score=408.84 Aligned_cols=235 Identities=53% Similarity=0.836 Sum_probs=216.4
Q ss_pred EEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 459 IQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 459 I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
|+++|++++|++ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 578999999974 357999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
|++|++.+|+.|++|||.++.+....+++.++++..++.+++..+|.|+++.+...... ||
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------------------LS 141 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQ-------------------LS 141 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCcc-------------------CC
Confidence 99999999999999999998665566778888888899999999999999988777655 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcCh
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 696 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth 696 (728)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|+.
T Consensus 142 ~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~ 221 (238)
T cd03249 142 GGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTH 221 (238)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHhhccchHHHHHHh
Q 004826 697 DDLLTKAGRYAQLWGQ 712 (728)
Q Consensus 697 ~eLl~~~g~Y~~l~~~ 712 (728)
+++....+.+++++..
T Consensus 222 ~~~~~~~~~~~~~~~~ 237 (238)
T cd03249 222 DELMAQKGVYAKLVKA 237 (238)
T ss_pred HHHhhcChhHHHHhhc
Confidence 9998877777666543
No 60
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-49 Score=422.70 Aligned_cols=218 Identities=28% Similarity=0.449 Sum_probs=185.4
Q ss_pred eEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC-------
Q 004826 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------- 526 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i------- 526 (728)
-|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 59999999999742 4799999999999999999999999999999999999999999999999998753
Q ss_pred ---------CHHHHhcceEEEcCCC--CCCcccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCccc-chhhcc
Q 004826 527 ---------TLESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGER 592 (728)
Q Consensus 527 ---------~~~~lR~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~d-T~vgE~ 592 (728)
+...+|+.|+||+|+| .+|+.|++|||.++.. ..+.++..+ .+ +++++.+ |++ ....+.
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~---~~--~~~l~~~--gL~~~~~~~~ 173 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK---LA--KFYLNKM--GLDDSYLERS 173 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH---HH--HHHHHHc--CCChhHhcCC
Confidence 3567899999999998 7999999999998732 234443322 11 2344444 443 334555
Q ss_pred ccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEecc
Q 004826 593 GLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAH 671 (728)
Q Consensus 593 G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaH 671 (728)
+.+ ||||||||++|||||+++|+|||||||||+||+.+++.+.+.|+++. +++|+|+|||
T Consensus 174 ~~~-------------------LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtH 234 (320)
T PRK13631 174 PFG-------------------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITH 234 (320)
T ss_pred ccc-------------------CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 555 99999999999999999999999999999999999999999998764 5799999999
Q ss_pred CchHH-hhcCeEEEEeCCEEEEEcChHHHhh
Q 004826 672 RLTTA-MQCDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 672 RLsti-~~aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
+++.+ +.||+|+||++|+|++.|+|+++.+
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFT 265 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99977 5699999999999999999997643
No 61
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=1.3e-48 Score=422.75 Aligned_cols=224 Identities=34% Similarity=0.551 Sum_probs=193.9
Q ss_pred EEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 004826 459 IQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (728)
Q Consensus 459 I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---lR 532 (728)
|+++||+++|+. ..++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999963 247999999999999999999999999999999999999999999999999999987655 58
Q ss_pred cceEEEcCCCCCCc-ccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF~-gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
+.|+||||++.+|. .|++|||.++.. ..+. +++.++++..++.+.....| ..
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----------~~---------- 140 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYP-----------SN---------- 140 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hh----------
Confidence 89999999999995 799999987632 2232 34667777777776655433 22
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.++. ||+|
T Consensus 141 ---------LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v 211 (343)
T TIGR02314 141 ---------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCV 211 (343)
T ss_pred ---------CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999998754 7999999999999865 9999
Q ss_pred EEEeCCEEEEEcChHHHhhc--cchHHHHHHh
Q 004826 683 IVLENGKVIEQGSHDDLLTK--AGRYAQLWGQ 712 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~--~g~Y~~l~~~ 712 (728)
++|++|+|+|.|+++++... ...++++...
T Consensus 212 ~vl~~G~iv~~g~~~~v~~~p~~~~~~~~~~~ 243 (343)
T TIGR02314 212 AVISNGELIEQGTVSEIFSHPKTPLAQKFIRS 243 (343)
T ss_pred EEEECCEEEEEcCHHHHHcCCCcHHHHHHHhh
Confidence 99999999999999999864 3344555544
No 62
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=2.8e-48 Score=397.10 Aligned_cols=219 Identities=44% Similarity=0.692 Sum_probs=203.8
Q ss_pred ceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
++|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.+
T Consensus 1 ~~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred CeEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 36899999999974 35799999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+||+|++.+|..|++||+.++.+..+++++.++++..++.+.+..+|.|++|.+.+.... |
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------L 141 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRG-------------------L 141 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCcc-------------------C
Confidence 999999999999999999987655566778889999999999999999999998877666 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEc
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~G 694 (728)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 142 SgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 142 SGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999999999999999987678999999999999899999999999998765
No 63
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-48 Score=401.31 Aligned_cols=218 Identities=36% Similarity=0.573 Sum_probs=187.5
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHHhcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~---~~lR~~I 535 (728)
|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|+.|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFG-GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 57899999996 4679999999999999999999999999999999999999999999999999988764 6788999
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCCC---CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~~---~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
+||||++.+|.+ |++||+.++.. ..+. +++.++++..++.++....| ..
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------ 136 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYP-----------AE------------ 136 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hh------------
Confidence 999999999986 99999987621 2233 23455566666554433222 12
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++
T Consensus 137 -------LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~ 209 (235)
T cd03261 137 -------LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAV 209 (235)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEE
Confidence 999999999999999999999999999999999999999999998753 7999999999998865 999999
Q ss_pred EeCCEEEEEcChHHHhhccchHH
Q 004826 685 LENGKVIEQGSHDDLLTKAGRYA 707 (728)
Q Consensus 685 ld~G~Ive~Gth~eLl~~~g~Y~ 707 (728)
|++|++++.|+++++......|.
T Consensus 210 l~~G~i~~~g~~~~~~~~~~~~~ 232 (235)
T cd03261 210 LYDGKIVAEGTPEELRASDDPLV 232 (235)
T ss_pred EECCeEEEecCHHHHcCCCChhh
Confidence 99999999999999986655453
No 64
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=4.9e-48 Score=395.60 Aligned_cols=215 Identities=36% Similarity=0.586 Sum_probs=194.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.++++|++|+|+ ++++|+|+||+|++||.++|+||+|||||||+|.|+|+.+|.+|+|++||+|+.+++.+++.+.+||
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 478999999997 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCC-CCCcccHHHHHHcCC-CC------C---CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 538 VPQDT-VLFNDTIFHNIRYGR-LS------A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 538 V~Qd~-~LF~gTIreNI~~g~-~~------~---sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|||++ .-|.-|++|=+.+|+ |. . +++.+.+|++..++.++..+. ++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~---~~-------------------- 137 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP---VD-------------------- 137 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc---cc--------------------
Confidence 99996 567889999999996 21 1 233588889999998876541 21
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH-HhhcCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst-i~~aD~Ii 683 (728)
.||||||||+.|||||.++|+||+||||||+||....-+|++.++++. +++|+|+|.|.++. .+.||+++
T Consensus 138 -------~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i 210 (258)
T COG1120 138 -------ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLI 210 (258)
T ss_pred -------ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 399999999999999999999999999999999999999999999886 36999999999975 68899999
Q ss_pred EEeCCEEEEEcChHHHhhcc
Q 004826 684 VLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~ 703 (728)
+|++|+|+.+|+++|.+...
T Consensus 211 ~lk~G~i~a~G~p~evlT~e 230 (258)
T COG1120 211 LLKDGKIVAQGTPEEVLTEE 230 (258)
T ss_pred EEECCeEEeecCcchhcCHH
Confidence 99999999999999998653
No 65
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=7.9e-48 Score=395.73 Aligned_cols=212 Identities=35% Similarity=0.585 Sum_probs=185.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC-----CCCCCEEEECCEeCCCCC--HHHH
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----DTHSGSIRIDGQDICEVT--LESL 531 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly-----~p~~G~I~idG~di~~i~--~~~l 531 (728)
|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.+++ ...+
T Consensus 1 i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYG-DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 57899999996 457999999999999999999999999999999999999 999999999999998877 6778
Q ss_pred hcceEEEcCCCCCCcccHHHHHHcCCCC--C-----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 532 RKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~gTIreNI~~g~~~--~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|++|+||||++.+|+.|++||+.++... . .++++.++++..++.+.+.+.++ ...
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~--------- 141 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALG--------- 141 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------ccc---------
Confidence 8999999999999988999999876321 1 13456677777777665544322 223
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+. .||+|+
T Consensus 142 ----------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~ 211 (227)
T cd03260 142 ----------LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTA 211 (227)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999998866699999999999876 499999
Q ss_pred EEeCCEEEEEcChHHH
Q 004826 684 VLENGKVIEQGSHDDL 699 (728)
Q Consensus 684 Vld~G~Ive~Gth~eL 699 (728)
+|++|++++.|+++|+
T Consensus 212 ~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 212 FLLNGRLVEFGPTEQI 227 (227)
T ss_pred EEeCCEEEEecCcccC
Confidence 9999999999998764
No 66
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-47 Score=392.41 Aligned_cols=216 Identities=35% Similarity=0.589 Sum_probs=195.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC-CCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~-~i~~~~lR~~Ia 536 (728)
-|+++|++|+|+++.++|+|+||+|++||.++|+|+||||||||+++|.|++.|++|.|.+||.++. +.+...+|++||
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 4899999999987679999999999999999999999999999999999999999999999999999 588999999999
Q ss_pred EEcCCC--CCCcccHHHHHHcCCCC--CCHHH----HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDT--VLFNDTIFHNIRYGRLS--ATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~~--~sdee----i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+|+|+| .+|..||.|.++||..+ .+.+| +.+|++.++++++....|
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-------------------------- 136 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-------------------------- 136 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc--------------------------
Confidence 999999 89999999999999643 44444 667777778877644433
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCC--CeEEEeccCchHHhh-cCeEEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANN--RTSIFIAHRLTTAMQ-CDEIIVL 685 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~--~TvIvIaHRLsti~~-aD~IiVl 685 (728)
.+||||||||+|||.+|..+|++||||||||+||+...+.+.+.++++.+. +|+|+|||++..+.. ||+++||
T Consensus 137 ----~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl 212 (235)
T COG1122 137 ----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVL 212 (235)
T ss_pred ----cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEE
Confidence 239999999999999999999999999999999999999999999998654 799999999999988 9999999
Q ss_pred eCCEEEEEcChHHHhhcc
Q 004826 686 ENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~ 703 (728)
++|+++.+|+++|+.+..
T Consensus 213 ~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 213 DDGKILADGDPAEIFNDA 230 (235)
T ss_pred ECCEEeecCCHHHHhhhh
Confidence 999999999998887653
No 67
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=397.41 Aligned_cols=454 Identities=20% Similarity=0.237 Sum_probs=320.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhH------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 197 ELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGA------LNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (728)
Q Consensus 197 ~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~------l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (728)
..+.++...+..+....|...+.++-++.. .||.-...|. .-.|++.|..........+...++.++++++.+
T Consensus 104 v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF 182 (604)
T COG4178 104 VAQTWLNQMLRLRWREWLTKDLLDRWLDPR-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISF 182 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345566666666666677777777777766 4443333331 135666665544333334455556665555544
Q ss_pred HHHHHHHH----------hhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhc
Q 004826 271 SGILAYKF----------GAPFAWITSLSVVAYVVFTLS----VTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFN 336 (728)
Q Consensus 271 ~~il~~~~----------~~~l~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~ 336 (728)
++++.-.- +..+....+.++++|+++..+ +.+...++.-..++..+.....+.-.-.+.+.|-.++
T Consensus 183 ~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~ 262 (604)
T COG4178 183 TGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYR 262 (604)
T ss_pred HHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 44433100 000011111222233333222 2222223333333344455556677778889999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Q 004826 337 NEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFL 416 (728)
Q Consensus 337 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l 416 (728)
-|+.+.++.++......+...+...+...+..+......+...+.+++++.....|+++.|+++.....+.++...+..+
T Consensus 263 GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 263 GEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888777666655544433333333333332222223333344566778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc------cccCCCCCCC--CCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEE
Q 004826 417 GSVYRETVQSLVDMKSMFQLLEEKA------DIQDRDNAMP--LNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSV 488 (728)
Q Consensus 417 ~~~~~~~~~a~~s~~rl~~ll~~~~------~~~~~~~~~~--~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~v 488 (728)
...+..+..-.+.+.|+.++.+.-. +......... .......|+|+|++..-|++++.|+++||+|+|||.+
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~l 422 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERL 422 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCEE
Confidence 9999999999999999999863221 1111100000 0001357999999999988889999999999999999
Q ss_pred EEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCC--CCHHHHH
Q 004826 489 AIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--ATEEEVY 566 (728)
Q Consensus 489 AIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~--~sdeei~ 566 (728)
-|.|+||||||||++.|+|+++--+|+|-.-. + +.+-|+||.|++=.||+||=|+|-++. .+|+|+.
T Consensus 423 lI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~----~-------~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~ 491 (604)
T COG4178 423 LITGESGAGKTSLLRALAGLWPWGSGRISMPA----D-------SALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELV 491 (604)
T ss_pred EEECCCCCCHHHHHHHHhccCccCCCceecCC----C-------CceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHH
Confidence 99999999999999999999999999986641 1 248999999999999999999998754 8999999
Q ss_pred HHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCC
Q 004826 567 DAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALD 646 (728)
Q Consensus 567 ~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD 646 (728)
+++.++++.+++++|.+--+ |-.. ||+|||||||+||.++++|++++|||||||||
T Consensus 492 ~vL~~vgL~~L~~rl~~~~~----------------------W~~v--LS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 492 AVLHKVGLGDLAERLDEEDR----------------------WDRV--LSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHHcCcHHHHHHHhccCc----------------------Hhhh--cChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 99999999999998643211 2222 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEe
Q 004826 647 STTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 647 ~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld 686 (728)
+++|..+++.+++...+.|+|-|+||.......++.+-++
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999999888888866554
No 68
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=3.4e-47 Score=390.77 Aligned_cols=216 Identities=42% Similarity=0.675 Sum_probs=199.8
Q ss_pred CceEEEEEEEEEecCC--ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 004826 456 GGSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 533 (728)
.+.|+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4579999999999742 47999999999999999999999999999999999999999999999999998888888899
Q ss_pred ceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 534 ~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
.++||+|++.+|..|++||+.++....+.+++.+.++...++++++.+|.|+++.+.+....
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~------------------ 150 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ------------------ 150 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc------------------
Confidence 99999999999999999999987654555666677777889999999999999998888766
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKV 690 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~I 690 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 151 -LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 151 -LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999999999999999999999999999988778999999999999999999999999975
No 69
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-47 Score=402.79 Aligned_cols=216 Identities=34% Similarity=0.527 Sum_probs=193.0
Q ss_pred eEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
-|+++||+++|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4899999999974 24699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCC--CCCcccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 536 GVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 536 a~V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
+||+|+| .++..||+|||.++.. ..+ ++++.++++..++.++....| ..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~------------ 140 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREP-----------AR------------ 140 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------cc------------
Confidence 9999998 4677899999998732 123 345777888888877766554 23
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~IiVl 685 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+..||+|++|
T Consensus 141 -------LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l 213 (279)
T PRK13650 141 -------LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVM 213 (279)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998753 79999999999999899999999
Q ss_pred eCCEEEEEcChHHHhhcc
Q 004826 686 ENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~ 703 (728)
++|++++.|+.+++.+..
T Consensus 214 ~~G~i~~~g~~~~~~~~~ 231 (279)
T PRK13650 214 KNGQVESTSTPRELFSRG 231 (279)
T ss_pred ECCEEEEECCHHHHHcCh
Confidence 999999999999887653
No 70
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-47 Score=395.59 Aligned_cols=218 Identities=30% Similarity=0.495 Sum_probs=192.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC---CCCCEEEECCEeCCCCCHHHHhcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESLRKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~---p~~G~I~idG~di~~i~~~~lR~~ 534 (728)
.|+++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.+.+...+|+.
T Consensus 2 ~~~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYG-KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEEC-CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 378999999996 4689999999999999999999999999999999999985 699999999999999888889999
Q ss_pred eEEEcCCCCCCcccHHHHHHcCCC--------CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 535 IGVVPQDTVLFNDTIFHNIRYGRL--------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 535 Ia~V~Qd~~LF~gTIreNI~~g~~--------~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|+|+||++.+|..|++|||.++.. ...++++.++++..++++++..+ ..+.+..
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~----------- 142 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDK-------LKQNALA----------- 142 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHH-------hcCCccc-----------
Confidence 999999999999999999987631 11233566777777776665432 2334444
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeEEEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVL 685 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~IiVl 685 (728)
||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|
T Consensus 143 --------LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l 214 (246)
T PRK14269 143 --------LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFF 214 (246)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEE
Confidence 999999999999999999999999999999999999999999998877899999999999875 59999999
Q ss_pred eCCEEEEEcChHHHhhc
Q 004826 686 ENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~ 702 (728)
++|++++.|+++|+.+.
T Consensus 215 ~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 215 HLGELIEFGESKEFFEN 231 (246)
T ss_pred ECCEEEEECCHHHHHhC
Confidence 99999999999999754
No 71
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-47 Score=404.68 Aligned_cols=212 Identities=32% Similarity=0.556 Sum_probs=193.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+.+|++.. +|+|+||+|+.||.++|||||||||||++++|+||.+|++|+|+|||.|+.+++++. +.||+
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEE
Confidence 599999999997544 999999999999999999999999999999999999999999999999999999877 79999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCC------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|+.-||.- ||+|||+|+-.. --++++.++++..++.+.+++.|..
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~-------------------------- 133 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQ-------------------------- 133 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCccc--------------------------
Confidence 9999999965 999999999532 2266788999999999998887742
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~ 687 (728)
||||||||+||||||+++|++++||||.|+||+.....+..-|+++.+ +.|+|.|||+...++. ||||.||++
T Consensus 134 ----LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~ 209 (338)
T COG3839 134 ----LSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMND 209 (338)
T ss_pred ----CChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeC
Confidence 999999999999999999999999999999999999999988887654 5899999999876654 999999999
Q ss_pred CEEEEEcChHHHhhc
Q 004826 688 GKVIEQGSHDDLLTK 702 (728)
Q Consensus 688 G~Ive~Gth~eLl~~ 702 (728)
|+|.+.|++.|+..+
T Consensus 210 G~i~Q~g~p~ely~~ 224 (338)
T COG3839 210 GRIQQVGTPLELYER 224 (338)
T ss_pred CeeeecCChHHHhhC
Confidence 999999999999865
No 72
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-47 Score=380.26 Aligned_cols=221 Identities=35% Similarity=0.575 Sum_probs=185.9
Q ss_pred eEEEEEEEEEecCCc---eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC-CHHHHhc
Q 004826 458 SIQFDNVHFSYLTER---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV-TLESLRK 533 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~---~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i-~~~~lR~ 533 (728)
-++.+|+++.|+... ++|+||||+|.+||+++|||+||||||||.++|+|+-+|++|+|++||.++..- .....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999998654 699999999999999999999999999999999999999999999999766553 3447889
Q ss_pred ceEEEcCCCCC-Cc--ccHHHHHH----cCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 534 SIGVVPQDTVL-FN--DTIFHNIR----YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 534 ~Ia~V~Qd~~L-F~--gTIreNI~----~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
.|-+|+|||+- +| -||++=|. .+.-+-.+++++++++.+++.+-. +
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~---------------------------l 135 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSF---------------------------L 135 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHH---------------------------H
Confidence 99999999973 33 36665552 211123456688888888886532 2
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCC--eEEEeccCchHHhh-cCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR--TSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~--TvIvIaHRLsti~~-aD~Ii 683 (728)
+|+|.. |||||||||||||||.-+|++||||||||+||+...++|.+-|.++.+++ |.|+|||.++.+.+ ||||+
T Consensus 136 ~R~P~e--LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~ 213 (252)
T COG1124 136 DRRPHE--LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIA 213 (252)
T ss_pred hcCchh--cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhhee
Confidence 233333 99999999999999999999999999999999999999999998887766 99999999999987 99999
Q ss_pred EEeCCEEEEEcChHHHhhc-cchHH
Q 004826 684 VLENGKVIEQGSHDDLLTK-AGRYA 707 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~-~g~Y~ 707 (728)
||++|+|||.++-+++... .-.|.
T Consensus 214 Vm~~G~ivE~~~~~~l~~~~~h~yt 238 (252)
T COG1124 214 VMDNGQIVEIGPTEELLSHPSHPYT 238 (252)
T ss_pred eeeCCeEEEeechhhhhcCCccHHH
Confidence 9999999999999999876 34453
No 73
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-47 Score=400.25 Aligned_cols=213 Identities=29% Similarity=0.513 Sum_probs=190.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+|+|++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 48999999999755679999999999999999999999999999999999999999999999999998888899999999
Q ss_pred EcCCC--CCCcccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 538 VPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 538 V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
|+|++ .+|..|++|||.++.. ..+ ++++.++++..++.++..+.|. .
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----------~-------------- 138 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPY-----------H-------------- 138 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChh-----------h--------------
Confidence 99998 6889999999998732 122 3456777888888777666552 2
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhcCeEEEEeC
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLEN 687 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~aD~IiVld~ 687 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++
T Consensus 139 -----LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 139 -----LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKE 213 (274)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999998875 479999999999998 46999999999
Q ss_pred CEEEEEcChHHHh
Q 004826 688 GKVIEQGSHDDLL 700 (728)
Q Consensus 688 G~Ive~Gth~eLl 700 (728)
|++++.|+++++.
T Consensus 214 G~i~~~g~~~~~~ 226 (274)
T PRK13647 214 GRVLAEGDKSLLT 226 (274)
T ss_pred CEEEEECCHHHhc
Confidence 9999999987653
No 74
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.1e-47 Score=392.46 Aligned_cols=212 Identities=34% Similarity=0.568 Sum_probs=183.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHHhcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~---~~~lR~~I 535 (728)
|+++||+++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999974368999999999999999999999999999999999999999999999999998877 56788999
Q ss_pred EEEcCCCCCCc-ccHHHHHHcCCCC--------------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 536 GVVPQDTVLFN-DTIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 536 a~V~Qd~~LF~-gTIreNI~~g~~~--------------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
+||||++.+|. .|++||+.++... ..++++.++++..++.+.. ......
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~----- 144 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKA-----------YQRADQ----- 144 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhh-----------CCCccc-----
Confidence 99999999887 6999999875321 1123445555555554332 223333
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM- 677 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~- 677 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. .++|+|+|||+++.+.
T Consensus 145 --------------LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~ 210 (241)
T cd03256 145 --------------LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLARE 210 (241)
T ss_pred --------------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999999875 3799999999999988
Q ss_pred hcCeEEEEeCCEEEEEcChHHHh
Q 004826 678 QCDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 678 ~aD~IiVld~G~Ive~Gth~eLl 700 (728)
.||+|++|++|++++.|+++++.
T Consensus 211 ~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 211 YADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred hCCEEEEEECCEEEeecCHHHhh
Confidence 69999999999999999999874
No 75
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.5e-47 Score=391.66 Aligned_cols=222 Identities=25% Similarity=0.441 Sum_probs=183.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH-hcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~Ia~ 537 (728)
|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFG-GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEEC-CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 47899999996 4679999999999999999999999999999999999999999999999999998887664 578999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCCCCHHHH-------HHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLSATEEEV-------YDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~sdeei-------~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
|||++.+|.+ |++|||.++........+ ........+++.++.+ |++.........
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~-------------- 143 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGE-------------- 143 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhh--------------
Confidence 9999999986 999999886421110000 0000111223444443 344333333334
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeC
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLEN 687 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~ 687 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++
T Consensus 144 -----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 144 -----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999998875 67999999999999866 999999999
Q ss_pred CEEEEEcChHHHhhc
Q 004826 688 GKVIEQGSHDDLLTK 702 (728)
Q Consensus 688 G~Ive~Gth~eLl~~ 702 (728)
|+|++.|+++++++.
T Consensus 219 G~i~~~~~~~~~~~~ 233 (236)
T cd03219 219 GRVIAEGTPDEVRNN 233 (236)
T ss_pred CEEEeecCHHHhccC
Confidence 999999999998653
No 76
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=410.31 Aligned_cols=214 Identities=30% Similarity=0.501 Sum_probs=191.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|++++++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|+|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 489999999996457899999999999999999999999999999999999999999999999999988764 479999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.|. .
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~--------------- 134 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPR-----------E--------------- 134 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChh-----------h---------------
Confidence 999999995 699999998742 122 2456788888888887776652 3
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~ 687 (728)
||||||||++|||||+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||++..+. .||+|++|++
T Consensus 135 ----LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~ 210 (356)
T PRK11650 135 ----LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNG 210 (356)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999988754 799999999998764 5999999999
Q ss_pred CEEEEEcChHHHhhcc
Q 004826 688 GKVIEQGSHDDLLTKA 703 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~ 703 (728)
|+|++.|+++|+..+.
T Consensus 211 G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 211 GVAEQIGTPVEVYEKP 226 (356)
T ss_pred CEEEEECCHHHHHhCC
Confidence 9999999999998753
No 77
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.5e-47 Score=359.76 Aligned_cols=211 Identities=36% Similarity=0.551 Sum_probs=188.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|.+++|.|+|.... =.++++|++||+|||+||||||||||++|++||..|.+|+|.|||+|....++. ++-++++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSML 76 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhh
Confidence 56889999996432 257899999999999999999999999999999999999999999999888775 4679999
Q ss_pred cCCCCCCcc-cHHHHHHcCC-CC-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~-~~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+||..||.- ||.+||.+|. |. ...+.+..|+..+|+.+|.++||.-
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~--------------------------- 129 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGE--------------------------- 129 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccc---------------------------
Confidence 999999965 9999999994 43 2356699999999999999999942
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~IiVld~G 688 (728)
||||||||+||||+|+|+.|||+||||.||||+.-..+...-+.++. ++.|+++|||.++-++ .+|+++++|+|
T Consensus 130 ---LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~G 206 (231)
T COG3840 130 ---LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206 (231)
T ss_pred ---cCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCC
Confidence 99999999999999999999999999999999999999888877664 5789999999998765 49999999999
Q ss_pred EEEEEcChHHHhhccc
Q 004826 689 KVIEQGSHDDLLTKAG 704 (728)
Q Consensus 689 ~Ive~Gth~eLl~~~g 704 (728)
||+++|+-+++++..+
T Consensus 207 ri~~~g~~~~~~~~~~ 222 (231)
T COG3840 207 RIAAQGSTQELLSGKA 222 (231)
T ss_pred EEEeeccHHHHhccCC
Confidence 9999999999987543
No 78
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-46 Score=381.20 Aligned_cols=203 Identities=42% Similarity=0.660 Sum_probs=183.3
Q ss_pred CceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 004826 456 GGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 534 (728)
.+.|+++|++++|++. .++|+|+||+|++||.+||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 3579999999999753 589999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 535 Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
|+||+|++.+|++|++|||.+.++ .+++++.++++ +.+....
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~------------------- 125 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLN------------------- 125 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCc-------------------
Confidence 999999999999999999987653 45555555443 2233434
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEc
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~G 694 (728)
|||||+||++||||++.+|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|
T Consensus 126 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g 205 (207)
T cd03369 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYD 205 (207)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999999887789999999999999889999999999999988
Q ss_pred Ch
Q 004826 695 SH 696 (728)
Q Consensus 695 th 696 (728)
++
T Consensus 206 ~~ 207 (207)
T cd03369 206 HP 207 (207)
T ss_pred CC
Confidence 64
No 79
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=394.01 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=188.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--i~~~~ 530 (728)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|++||+++.. .+...
T Consensus 7 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 7 IIETENLNLFYT-DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eEEEeeeEEEeC-CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHH
Confidence 599999999996 46799999999999999999999999999999999999997 49999999999863 34567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCC---CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS---AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~---~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.|+||+|++.+|+.|++|||.++... .+ ++++.++++.+++.+.+ ++.+++. ...
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~~----~~~-------- 150 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNTN----ALS-------- 150 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhCC----ccc--------
Confidence 89999999999999999999999886311 11 34466666776664433 2344443 333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|
T Consensus 151 -----------LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i 219 (254)
T PRK14273 151 -----------LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRT 219 (254)
T ss_pred -----------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999998778999999999998754 9999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|+|++.|+++++.+.
T Consensus 220 ~~l~~G~i~~~g~~~~~~~~ 239 (254)
T PRK14273 220 AFFLNGCIEEESSTDELFFN 239 (254)
T ss_pred EEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999754
No 80
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=8.5e-47 Score=386.14 Aligned_cols=210 Identities=30% Similarity=0.473 Sum_probs=181.0
Q ss_pred EEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
|+++||+++|++. +++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++... ...++++++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 5799999999743 6899999999999999999999999999999999999999999999999998765 3677889999
Q ss_pred EcCCCCCC-cccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLF-NDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.+| +.|++||+.++.. ..+. +++.++++..++.+.. ++.+ ..
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~--------------- 133 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKA-------NKRA----RT--------------- 133 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-------hChh----hh---------------
Confidence 99999999 5799999987521 1222 3345555555554332 3322 23
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCE
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGK 689 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~ 689 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+
T Consensus 134 ----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 ----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998778999999999998865 99999999999
Q ss_pred EEEEcChHHH
Q 004826 690 VIEQGSHDDL 699 (728)
Q Consensus 690 Ive~Gth~eL 699 (728)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999999875
No 81
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=409.39 Aligned_cols=223 Identities=32% Similarity=0.560 Sum_probs=189.4
Q ss_pred EEEEEEEEEec--C-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 004826 459 IQFDNVHFSYL--T-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (728)
Q Consensus 459 I~f~nVsF~Y~--~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---lR 532 (728)
|+++||+|+|+ . ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 2 368999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEcCCCCCCc-ccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF~-gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
++|+||||++.+|. .|++|||.++.. ..+. +++.++++..++.++..+.| ..
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~---------- 140 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYP-----------AQ---------- 140 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hh----------
Confidence 89999999999986 699999987631 2232 33455555555544433322 23
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|
T Consensus 141 ---------LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v 211 (343)
T PRK11153 141 ---------LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRV 211 (343)
T ss_pred ---------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999998753 7999999999999876 9999
Q ss_pred EEEeCCEEEEEcChHHHhhcc--chHHHHHH
Q 004826 683 IVLENGKVIEQGSHDDLLTKA--GRYAQLWG 711 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~~--g~Y~~l~~ 711 (728)
++|++|++++.|+++++.... ..++.++.
T Consensus 212 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 242 (343)
T PRK11153 212 AVIDAGRLVEQGTVSEVFSHPKHPLTREFIQ 242 (343)
T ss_pred EEEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 999999999999999998652 33444544
No 82
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=388.01 Aligned_cols=222 Identities=36% Similarity=0.528 Sum_probs=190.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSF-GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 589999999996 4679999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCCCCcccHHHHHHcCCCC--CCHHHHHHHHHHhccH-HHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 538 VPQDTVLFNDTIFHNIRYGRLS--ATEEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~--~sdeei~~A~~~a~l~-~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
+||++.+|..|++||+.++... ..++++.++++..++. +.. ......
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~------------------- 131 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYA-----------TRDVKN------------------- 131 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHh-----------hCCccc-------------------
Confidence 9999999999999999876421 2234455555555552 221 122223
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCCEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 691 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G~Iv 691 (728)
||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~ 211 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILV 211 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999998753 7999999999998765 9999999999999
Q ss_pred EEcChHHHhhcc-chHHHHH
Q 004826 692 EQGSHDDLLTKA-GRYAQLW 710 (728)
Q Consensus 692 e~Gth~eLl~~~-g~Y~~l~ 710 (728)
+.|+++++.... ..|.+.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~ 231 (241)
T PRK14250 212 EYAKTYDFFTNPQNEVTKLF 231 (241)
T ss_pred EeCCHHHHhcCCCcHHHHHH
Confidence 999999998643 2354433
No 83
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.3e-46 Score=385.21 Aligned_cols=217 Identities=31% Similarity=0.526 Sum_probs=180.4
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH-hcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~Ia~ 537 (728)
|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.|+|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYG-KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecC-CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 57999999996 4579999999999999999999999999999999999999999999999999998887654 678999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
|||++.+|.+ |++||+.++.+....++..+.+ ..+.+.+..+++.+++ .... ||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~--~~~l~~~~~l~~~~~~----~~~~-------------------LS 134 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARL--ERVYELFPRLKERRKQ----LAGT-------------------LS 134 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHH--HHHHHHHHhhhhhhhC----chhh-------------------CC
Confidence 9999999986 9999999875322111111111 1122222223333333 3333 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEEEEc
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 694 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~G 694 (728)
||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 135 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (222)
T cd03224 135 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEG 214 (222)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeC
Confidence 999999999999999999999999999999999999999998875 57999999999998755 9999999999999999
Q ss_pred ChHHHhh
Q 004826 695 SHDDLLT 701 (728)
Q Consensus 695 th~eLl~ 701 (728)
+++++.+
T Consensus 215 ~~~~~~~ 221 (222)
T cd03224 215 TAAELLA 221 (222)
T ss_pred CHHHHhc
Confidence 9988754
No 84
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=6.1e-46 Score=392.53 Aligned_cols=241 Identities=27% Similarity=0.448 Sum_probs=207.8
Q ss_pred HHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 431 KSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 431 ~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
+.+.+++..+++..+. .+.+...+.|+++||++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++
T Consensus 15 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 15 EGFGELLEKAKQENND---RKHSSDDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred HHHHHHHhcccccccc---cccCCCCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4556666665543221 122223357999999995 3579999999999999999999999999999999999999
Q ss_pred CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhh
Q 004826 511 THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (728)
Q Consensus 511 p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vg 590 (728)
|++|+|.+|| .|+||+|++.+|++|++||+.++.. ..+.++.++++.+++.+.+..+|.+++|.++
T Consensus 89 p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~ 154 (282)
T cd03291 89 PSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLG 154 (282)
T ss_pred CCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceec
Confidence 9999999998 4999999999999999999998753 3445667788888999999999999999999
Q ss_pred ccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHH-HHHcCCCeEEEe
Q 004826 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL-KSLANNRTSIFI 669 (728)
Q Consensus 591 E~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L-~~l~~~~TvIvI 669 (728)
+.+.. ||||||||++|||||+++|++|||||||++||+++...+.+.+ +.+.+++|+|+|
T Consensus 155 ~~~~~-------------------LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiii 215 (282)
T cd03291 155 EGGIT-------------------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILV 215 (282)
T ss_pred CCCCc-------------------CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEE
Confidence 88877 9999999999999999999999999999999999999998754 566668999999
Q ss_pred ccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHH
Q 004826 670 AHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 670 aHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
||++..+..||+|++|++|++++.|+++++.+....|.+.+
T Consensus 216 sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 256 (282)
T cd03291 216 TSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKL 256 (282)
T ss_pred eCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHHHHH
Confidence 99999999999999999999999999999987656666554
No 85
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-46 Score=398.01 Aligned_cols=217 Identities=34% Similarity=0.541 Sum_probs=194.5
Q ss_pred eEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
-|+++||+|+|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+.+...+++.|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 4899999999974 457999999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEcCCC--CCCcccHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDT--VLFNDTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
||+|++ .+++.|++|||.++... .+ ++++.++++..++++++...|. .
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----------~------------- 140 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPH-----------R------------- 140 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcc-----------c-------------
Confidence 999998 56788999999886321 22 2446777888888887776653 3
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~IiVld 686 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|+
T Consensus 141 ------LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~ 214 (279)
T PRK13635 141 ------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMN 214 (279)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 999999999999999999999999999999999999999999998764 799999999999999999999999
Q ss_pred CCEEEEEcChHHHhhccc
Q 004826 687 NGKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~g 704 (728)
+|++++.|+.+++.+...
T Consensus 215 ~G~i~~~g~~~~~~~~~~ 232 (279)
T PRK13635 215 KGEILEEGTPEEIFKSGH 232 (279)
T ss_pred CCEEEEECCHHHHhcCHH
Confidence 999999999999876543
No 86
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.2e-46 Score=376.40 Aligned_cols=204 Identities=38% Similarity=0.553 Sum_probs=174.2
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHH-
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESL- 531 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~---~~l- 531 (728)
++++||+..|..+ .++|+++||+|++||.|||+||||||||||+++|.++-.|++|.|.++|.|+..++. ..+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5799999999733 379999999999999999999999999999999999999999999999999999984 334
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHHc----CCCCC--CHHHHHHHHHHhccHHHHH-hCCCcccchhhccccccchhHHHh
Q 004826 532 RKSIGVVPQDTVLFND-TIFHNIRY----GRLSA--TEEEVYDAARRAAIHDTIM-NFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~g-TIreNI~~----g~~~~--sdeei~~A~~~a~l~~~I~-~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
|++||||+|+..|+.. |++|||.+ ..... .++.+.+.++..++.+... ..|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p--------------------- 140 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKP--------------------- 140 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCc---------------------
Confidence 5579999999998865 99999984 32221 2344555566666665443 333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhhcCe
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDE 681 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~aD~ 681 (728)
..||||||||+||||||+.+|+|++.||||+|||++|.+.|++.++++. .|+|+|+|||.......|||
T Consensus 141 ---------~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 141 ---------SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred ---------hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 1299999999999999999999999999999999999999999999874 47899999999999999999
Q ss_pred EEEEeCCEEEE
Q 004826 682 IIVLENGKVIE 692 (728)
Q Consensus 682 IiVld~G~Ive 692 (728)
++.|++|++.+
T Consensus 212 ~i~l~dG~~~~ 222 (226)
T COG1136 212 VIELKDGKIEE 222 (226)
T ss_pred EEEEeCCeeee
Confidence 99999999543
No 87
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.2e-46 Score=390.78 Aligned_cols=212 Identities=33% Similarity=0.548 Sum_probs=181.6
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHHhcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~---~~lR~~I 535 (728)
|+++||+++|+.++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++. ..+|+.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 6899999999635679999999999999999999999999999999999999999999999999987764 4578899
Q ss_pred EEEcCCCCCCc-ccHHHHHHcCCCC--------------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 536 GVVPQDTVLFN-DTIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 536 a~V~Qd~~LF~-gTIreNI~~g~~~--------------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
+||||++.+|. .|++||+.++... ..++++.++++..++.+++. .....
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~----- 145 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY-----------QRADQ----- 145 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc-----------CCccc-----
Confidence 99999999886 6999999876321 11233455555555544332 23333
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM- 677 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~- 677 (728)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++. .++|+|+|||+++.+.
T Consensus 146 --------------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~ 211 (243)
T TIGR02315 146 --------------LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKK 211 (243)
T ss_pred --------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999999999999998874 3799999999999985
Q ss_pred hcCeEEEEeCCEEEEEcChHHHh
Q 004826 678 QCDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 678 ~aD~IiVld~G~Ive~Gth~eLl 700 (728)
.||+|++|++|++++.|+++++.
T Consensus 212 ~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 212 YADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred hcCeEEEEECCEEEecCCHHHhC
Confidence 59999999999999999999874
No 88
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=6.9e-47 Score=385.82 Aligned_cols=202 Identities=32% Similarity=0.557 Sum_probs=177.2
Q ss_pred EEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---HHhcc
Q 004826 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (728)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~---~lR~~ 534 (728)
|+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 7899999999754 5799999999999999999999999999999999999999999999999999877643 47889
Q ss_pred eEEEcCCCCCCc-ccHHHHHHcCCC------CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 535 IGVVPQDTVLFN-DTIFHNIRYGRL------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 535 Ia~V~Qd~~LF~-gTIreNI~~g~~------~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
++||||++.+|. .|++||+.++.. ...++++.++++..++.++....|. .
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~------------ 138 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPM-----------Q------------ 138 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh-----------h------------
Confidence 999999999986 599999987521 1124567778888888766655441 3
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVl 685 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|
T Consensus 139 -------LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 139 -------LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999998874 47999999999999875 8999999
Q ss_pred eCCEE
Q 004826 686 ENGKV 690 (728)
Q Consensus 686 d~G~I 690 (728)
++|+|
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99985
No 89
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-46 Score=392.63 Aligned_cols=218 Identities=33% Similarity=0.519 Sum_probs=189.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~~ 530 (728)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+...
T Consensus 6 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 6 KMEARGLSFFYG-DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred EEEEeeeEEEEC-CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 599999999996 4679999999999999999999999999999999999975 689999999999875 45567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--C-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.|+||+|++.+|..|++|||.++.. . ..++++.++++..++++++.. .+......
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~-------- 149 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKD-------RLHESALG-------- 149 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCccc--------
Confidence 8999999999999999999999987521 1 123456777777777654432 22333434
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|
T Consensus 150 -----------LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v 218 (253)
T PRK14242 150 -----------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVT 218 (253)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999877899999999999885 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|+|++.|+++++.+.
T Consensus 219 ~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 219 AFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred EEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999754
No 90
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-46 Score=389.09 Aligned_cols=212 Identities=33% Similarity=0.531 Sum_probs=181.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+|+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+. .++.|+|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 4899999999964 689999999999999999999999999999999999999999999999999877653 3678999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCCC--C----C----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRLS--A----T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~--~----s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|+|++.+|. .|++|||.++... . + ++++.++++..++.++.... ...
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~----------- 136 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY-----------PAQ----------- 136 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcC-----------hhh-----------
Confidence 999999986 6999999886321 1 1 22345555665654443332 223
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|+
T Consensus 137 --------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~ 208 (239)
T cd03296 137 --------LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVV 208 (239)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999865 499999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
+|++|++++.|+++++.+.
T Consensus 209 ~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 209 VMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred EEECCeEEEecCHHHHhcC
Confidence 9999999999999998754
No 91
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=397.18 Aligned_cols=217 Identities=29% Similarity=0.515 Sum_probs=187.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~i~~~~lR~~I 535 (728)
-|+++||+|+|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+|+.|
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 4899999999975578999999999999999999999999999999999999999999999999984 34567889999
Q ss_pred EEEcCCC--CCCcccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 536 GVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 536 a~V~Qd~--~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
+||||++ .+|+.|++|||.++.. ..+. +.+.++++..+++++.. .....
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~------------ 141 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKD-----------KPTHC------------ 141 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhh-----------CCccc------------
Confidence 9999998 6789999999987532 2232 33556666666655332 22333
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIV 684 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiV 684 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++
T Consensus 142 -------LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~ 214 (283)
T PRK13636 142 -------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFV 214 (283)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999988764 799999999999986 6999999
Q ss_pred EeCCEEEEEcChHHHhhccc
Q 004826 685 LENGKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 685 ld~G~Ive~Gth~eLl~~~g 704 (728)
|++|++++.|+++++++...
T Consensus 215 l~~G~i~~~g~~~~~~~~~~ 234 (283)
T PRK13636 215 MKEGRVILQGNPKEVFAEKE 234 (283)
T ss_pred EECCEEEEeCCHHHHhcCHH
Confidence 99999999999999987543
No 92
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-46 Score=391.24 Aligned_cols=220 Identities=31% Similarity=0.499 Sum_probs=190.4
Q ss_pred CceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCH
Q 004826 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTL 528 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~ 528 (728)
.+.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+.
T Consensus 11 ~~~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYG-KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeC-CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 35799999999996 4579999999999999999999999999999999999986 589999999999863 456
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHHcCCC---CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 529 ~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~---~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
..+|++|+||+|++.+|..|++||+.++.. ..+ ++++.++++..++.+.+. ..+.+....
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~------ 156 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYS------ 156 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCC------
Confidence 788999999999999999999999987632 122 245667777777654332 233444444
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcC
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCD 680 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD 680 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||
T Consensus 157 -------------LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d 223 (260)
T PRK10744 157 -------------LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSD 223 (260)
T ss_pred -------------CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999877899999999999885 599
Q ss_pred eEEEEeCCEEEEEcChHHHhhc
Q 004826 681 EIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~eLl~~ 702 (728)
+|++|++|++++.|+++++...
T Consensus 224 ~i~~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 224 YTAFMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred EEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999998764
No 93
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.9e-46 Score=390.54 Aligned_cols=217 Identities=33% Similarity=0.560 Sum_probs=187.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCCCC--CHHHH
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICEV--TLESL 531 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~~i--~~~~l 531 (728)
|+++||+++|+ +.++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+. +...+
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYG-EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEEC-CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 78999999996 457999999999999999999999999999999999999998 99999999999763 46678
Q ss_pred hcceEEEcCCCCCCcccHHHHHHcCCC--C-CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--S-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~gTIreNI~~g~~--~-~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|+.|+||||++.+|..|++||+.++.. . .+ ++++.++++..++.+++.. ........
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~--------- 144 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD-------RLHDSALG--------- 144 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhh-------HhhCCccc---------
Confidence 899999999999999999999987521 1 11 2456677777777644421 12222233
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|+
T Consensus 145 ----------LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~ 214 (247)
T TIGR00972 145 ----------LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTA 214 (247)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999998877799999999999875 599999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
+|++|++++.|+++|+...
T Consensus 215 ~l~~G~i~~~~~~~~~~~~ 233 (247)
T TIGR00972 215 FFYDGELVEYGPTEQIFTN 233 (247)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999998754
No 94
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-46 Score=386.40 Aligned_cols=213 Identities=35% Similarity=0.591 Sum_probs=184.5
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---lR 532 (728)
|+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+... ++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999743 28999999999999999999999999999999999999999999999999998876543 57
Q ss_pred cceEEEcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
+.|+||||++.+|. .|++|||.++.. ..+ .+++.++++..++.+.+.+.| ..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~---------- 140 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYP-----------AQ---------- 140 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcCh-----------hh----------
Confidence 89999999999997 699999987521 122 334566666666655544332 23
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|
T Consensus 141 ---------LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i 211 (233)
T cd03258 141 ---------LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211 (233)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999988753 7999999999999865 9999
Q ss_pred EEEeCCEEEEEcChHHHhh
Q 004826 683 IVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~ 701 (728)
++|++|++++.|+++++++
T Consensus 212 ~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 212 AVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred EEEECCEEEEecCHHHHhc
Confidence 9999999999999998865
No 95
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-46 Score=397.74 Aligned_cols=214 Identities=26% Similarity=0.485 Sum_probs=183.0
Q ss_pred EEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----CCHHH
Q 004826 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLES 530 (728)
Q Consensus 459 I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----i~~~~ 530 (728)
|+++||+|+|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999743 269999999999999999999999999999999999999999999999999863 44677
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHHcCCC--CCCHH----HHHHHHHHhccH-HHHHhCCCcccchhhccccccchhHH
Q 004826 531 LRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 531 lR~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sde----ei~~A~~~a~l~-~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
+|+.|+||+|+| .+|..|+.|||.|+.. ..+.+ ++.++++..++. ++.. .....
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~~------ 144 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWE-----------KSPFE------ 144 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhcc-----------CCccc------
Confidence 899999999998 7999999999998742 22333 344455555552 2222 11223
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhc
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQC 679 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~a 679 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+ +.|
T Consensus 145 -------------LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~ 211 (288)
T PRK13643 145 -------------LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYA 211 (288)
T ss_pred -------------CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 99999999999999999999999999999999999999999998875 479999999999987 469
Q ss_pred CeEEEEeCCEEEEEcChHHHhhc
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|+|++|++|+|++.|+++|+...
T Consensus 212 dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 212 DYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred CEEEEEECCEEEEECCHHHHHcC
Confidence 99999999999999999998754
No 96
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-46 Score=397.71 Aligned_cols=216 Identities=36% Similarity=0.574 Sum_probs=184.4
Q ss_pred EEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC--HHHHh
Q 004826 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--LESLR 532 (728)
Q Consensus 459 I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~--~~~lR 532 (728)
|+++||+|+|++. +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 8999999999742 47999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEcCCC--CCCcccHHHHHHcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 533 KSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 533 ~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
++|+||||+| .+|+.|++|||.++.. ..+.+ ++.++++..++. +++........
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~--------- 144 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFE--------- 144 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCccc---------
Confidence 9999999998 6889999999998632 23443 345555555553 01112222233
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCe
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~ 681 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+
T Consensus 145 ----------LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr 214 (287)
T PRK13637 145 ----------LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADR 214 (287)
T ss_pred ----------CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999999999999999999999999999999999999999999988753 79999999999987 46999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++|++|++++.|+.+++.+.
T Consensus 215 v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 215 IIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred EEEEECCEEEEECCHHHHHhC
Confidence 999999999999999998653
No 97
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-46 Score=394.45 Aligned_cols=217 Identities=29% Similarity=0.534 Sum_probs=192.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-++++||+++|++.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 37899999999755679999999999999999999999999999999999999999999999999988888889999999
Q ss_pred EcCCC--CCCcccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 538 VPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 538 V~Qd~--~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
|+|++ .+|+.|++|||.++.. ..+. +.+.++++..++.+++...|. .
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~-------------- 137 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPH-----------H-------------- 137 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcc-----------c--------------
Confidence 99998 4788999999987532 2232 346777777788776655442 3
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLE 686 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld 686 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|+
T Consensus 138 -----LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~ 212 (277)
T PRK13652 138 -----LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMD 212 (277)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999988754 79999999999998 5699999999
Q ss_pred CCEEEEEcChHHHhhccc
Q 004826 687 NGKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~g 704 (728)
+|++++.|+++|+++...
T Consensus 213 ~G~i~~~g~~~~~~~~~~ 230 (277)
T PRK13652 213 KGRIVAYGTVEEIFLQPD 230 (277)
T ss_pred CCeEEEECCHHHHhcCHH
Confidence 999999999999986543
No 98
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-46 Score=380.36 Aligned_cols=210 Identities=35% Similarity=0.559 Sum_probs=187.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++|++|+|.++ +||+||||+|++|+++|||||+|||||||+|+|+|+.+|++|+|.++|.+.++... +..|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY 79 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence 59999999999865 79999999999999999999999999999999999999999999999998877654 578999
Q ss_pred EcCCC---CCCcccHHHHHHcCCCCC----------CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 538 VPQDT---VLFNDTIFHNIRYGRLSA----------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 538 V~Qd~---~LF~gTIreNI~~g~~~~----------sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|||.. +=|.-||+|=+.+|+... +.+++.+|++.+++.++..+ ++||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r-------~i~~------------- 139 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDR-------QIGE------------- 139 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCC-------cccc-------------
Confidence 99955 568899999999985321 24889999999999987543 4554
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cCeE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD~I 682 (728)
|||||+||+.|||||+.+|++|+|||||+++|+.++..|.+-|.++.+ |||+++|+|+|+.+.. +|+|
T Consensus 140 ----------LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~v 209 (254)
T COG1121 140 ----------LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRV 209 (254)
T ss_pred ----------cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEE
Confidence 999999999999999999999999999999999999999999988865 8999999999998766 9999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
+.| |++++..|+.+|.+..
T Consensus 210 i~L-n~~~~~~G~~~~~~~~ 228 (254)
T COG1121 210 ICL-NRHLIASGPPEEVLTE 228 (254)
T ss_pred EEE-cCeeEeccChhhccCH
Confidence 998 4688889999998864
No 99
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-46 Score=382.30 Aligned_cols=203 Identities=35% Similarity=0.570 Sum_probs=175.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEE
Confidence 578999999964 689999999999999999999999999999999999999999999999999987553 57889999
Q ss_pred cCCCCCCc-ccHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFN-DTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
||++.+|. .|++||+.++... .+ ++++.++++..++.+++.+.| ..
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~---------------- 130 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYP-----------HE---------------- 130 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hh----------------
Confidence 99999886 6999999876321 12 234566666666655544433 23
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 131 ---LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G 207 (213)
T cd03259 131 ---LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEG 207 (213)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECC
Confidence 99999999999999999999999999999999999999999999875 37999999999998754 9999999999
Q ss_pred EEEEEc
Q 004826 689 KVIEQG 694 (728)
Q Consensus 689 ~Ive~G 694 (728)
++++.|
T Consensus 208 ~i~~~g 213 (213)
T cd03259 208 RIVQVG 213 (213)
T ss_pred EEEecC
Confidence 999876
No 100
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-46 Score=396.71 Aligned_cols=220 Identities=30% Similarity=0.539 Sum_probs=185.3
Q ss_pred eEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHH
Q 004826 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i----~~~ 529 (728)
.|+++||+|+|++. +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999742 4799999999999999999999999999999999999999999999999999764 346
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchh-hccccccchhHHHhh
Q 004826 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVV-GERGLKGRSLLYIQK 604 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~v-gE~G~~~~~~~~~~~ 604 (728)
.+|+.|+||||+| .+|..|+.|||.++.. ..+.++..+. +++.++.+ |+++.. ......
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~--------- 145 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQ--------- 145 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCccc---------
Confidence 7899999999997 6899999999998732 2344333322 12333332 554322 233444
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCe
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~ 681 (728)
||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+
T Consensus 146 ----------LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dr 215 (286)
T PRK13646 146 ----------MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADE 215 (286)
T ss_pred ----------CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999874 4799999999999874 6999
Q ss_pred EEEEeCCEEEEEcChHHHhhcc
Q 004826 682 IIVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~~ 703 (728)
|++|++|+|++.|+++++.+..
T Consensus 216 i~~l~~G~i~~~g~~~~~~~~~ 237 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELFKDK 237 (286)
T ss_pred EEEEECCEEEEECCHHHHHhCH
Confidence 9999999999999999987754
No 101
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-46 Score=389.06 Aligned_cols=218 Identities=31% Similarity=0.497 Sum_probs=186.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCC--CCCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDIC--EVTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~--~i~~~~ 530 (728)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++. +.+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 4899999999964 67999999999999999999999999999999999999974 999999999997 456667
Q ss_pred HhcceEEEcCCCCCCcc-cHHHHHHcCCC--C--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRL--S--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~g-TIreNI~~g~~--~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
+|++|+||+|++.+|.. |++||+.++.. . .+ ++++.++++..++.+++.. ........
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~------ 149 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSN------ 149 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhh------
Confidence 89999999999999975 99999987521 1 01 2345666666666544322 12223333
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cC
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CD 680 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD 680 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||
T Consensus 150 -------------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d 216 (253)
T PRK14267 150 -------------LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSD 216 (253)
T ss_pred -------------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCC
Confidence 9999999999999999999999999999999999999999999998778999999999998765 99
Q ss_pred eEEEEeCCEEEEEcChHHHhhc
Q 004826 681 EIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~eLl~~ 702 (728)
+|++|++|++++.|+++++.+.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVFEN 238 (253)
T ss_pred EEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999764
No 102
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-46 Score=405.52 Aligned_cols=212 Identities=29% Similarity=0.496 Sum_probs=188.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .++.|+|
T Consensus 6 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICM 82 (351)
T ss_pred EEEEEeEEEEEC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 699999999996 4679999999999999999999999999999999999999999999999999988765 4678999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.||. .|++|||.|+.. ..+ ++++.++++..++.++..+.| ..
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----------~~--------------- 136 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYV-----------DQ--------------- 136 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hh---------------
Confidence 999999996 599999998732 122 345677777777766554443 12
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~ 687 (728)
||||||||+||||||+++|++|+||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ .-||+|+||++
T Consensus 137 ----LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~ 212 (351)
T PRK11432 137 ----ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNK 212 (351)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999988754 79999999999987 45999999999
Q ss_pred CEEEEEcChHHHhhc
Q 004826 688 GKVIEQGSHDDLLTK 702 (728)
Q Consensus 688 G~Ive~Gth~eLl~~ 702 (728)
|+|++.|+++|+.+.
T Consensus 213 G~i~~~g~~~~~~~~ 227 (351)
T PRK11432 213 GKIMQIGSPQELYRQ 227 (351)
T ss_pred CEEEEEcCHHHHHhC
Confidence 999999999999865
No 103
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.5e-46 Score=368.38 Aligned_cols=223 Identities=36% Similarity=0.584 Sum_probs=192.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---HHhcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~---~lR~~ 534 (728)
-|++++|+|+|. ++.|++||||+|++||.++|+|+||||||||+++|.|+..|++|+|+++|.|+.+++.+ .+|++
T Consensus 8 ~I~vr~v~~~fG-~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r 86 (263)
T COG1127 8 LIEVRGVTKSFG-DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKR 86 (263)
T ss_pred eEEEeeeeeecC-CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhh
Confidence 699999999994 67899999999999999999999999999999999999999999999999999999864 56999
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCC---CCCCHHHHHH----HHHHhccHHH-HHhCCCcccchhhccccccchhHHHhhh
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGR---LSATEEEVYD----AARRAAIHDT-IMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~---~~~sdeei~~----A~~~a~l~~~-I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
+|+++|..-||+. ||+||+.|-- ...+++++.+ -++.+|+... -+.+|
T Consensus 87 ~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P----------------------- 143 (263)
T COG1127 87 MGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP----------------------- 143 (263)
T ss_pred eeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------------------
Confidence 9999999999976 9999999842 2345555543 3444555544 23333
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~I 682 (728)
+.||||.+.|+|||||+.-||+||++|||||+|||.+...+-+-|+++. -+.|+|+|||.++++.. ||||
T Consensus 144 -------sELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 144 -------SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred -------hhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceE
Confidence 2399999999999999999999999999999999999999988887764 47999999999998876 7999
Q ss_pred EEEeCCEEEEEcChHHHhhccchH-HHHHH
Q 004826 683 IVLENGKVIEQGSHDDLLTKAGRY-AQLWG 711 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~~g~Y-~~l~~ 711 (728)
+++.+|+|+..||.+||.+.+..| ++++.
T Consensus 217 ~~L~~gkv~~~Gt~~el~~sd~P~v~qf~~ 246 (263)
T COG1127 217 AVLADGKVIAEGTPEELLASDDPWVRQFFN 246 (263)
T ss_pred EEEeCCEEEEeCCHHHHHhCCCHHHHHHhc
Confidence 999999999999999999876555 55544
No 104
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9e-46 Score=382.79 Aligned_cols=216 Identities=29% Similarity=0.524 Sum_probs=182.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+... ++.++|+
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYG-ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVV 79 (236)
T ss_pred EEEEeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEe
Confidence 68999999996 468999999999999999999999999999999999999999999999999998877644 4589999
Q ss_pred cCCCCC-CcccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 539 PQDTVL-FNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 539 ~Qd~~L-F~gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
||++.+ +..|++||+.++.. ..+.++..+ .+.++++.+ |++......... |
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~-------------------L 133 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRE-------------------L 133 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhh-------------------C
Confidence 999988 56899999987532 122222111 122333332 333333344434 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhhcCeEEEEeCCEEEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~ 693 (728)
|||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.
T Consensus 134 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~ 213 (236)
T TIGR03864 134 NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLAD 213 (236)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEe
Confidence 9999999999999999999999999999999999999999999875 47999999999999989999999999999999
Q ss_pred cChHHHhhc
Q 004826 694 GSHDDLLTK 702 (728)
Q Consensus 694 Gth~eLl~~ 702 (728)
|+++++.+.
T Consensus 214 ~~~~~~~~~ 222 (236)
T TIGR03864 214 GAAAELRGA 222 (236)
T ss_pred CCHHHHHHH
Confidence 999999875
No 105
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-46 Score=391.25 Aligned_cols=220 Identities=32% Similarity=0.514 Sum_probs=190.0
Q ss_pred CceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCH
Q 004826 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTL 528 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--i~~ 528 (728)
.+.|+++||+++|+ ++++|+|+||+|+|||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+ .+.
T Consensus 17 ~~~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYG-EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEEC-CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 35799999999996 46899999999999999999999999999999999999985 89999999999975 456
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHHcCCC-------CC-CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL-------SA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 529 ~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~-------~~-sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
..+|+.|+||+|++.+|..|++|||.++.. .. .++++.++++..++.+++.. ........
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~----- 163 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKD-------RLHEPGTG----- 163 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhH-------HhhCCccc-----
Confidence 678999999999999999999999987521 11 13446777777777654431 22333434
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hc
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QC 679 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~a 679 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .|
T Consensus 164 --------------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~ 229 (267)
T PRK14235 164 --------------LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVS 229 (267)
T ss_pred --------------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhC
Confidence 999999999999999999999999999999999999999999998877899999999999985 48
Q ss_pred CeEEEEeCCEEEEEcChHHHhhc
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|+|++|++|+|++.|+++++...
T Consensus 230 d~v~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 230 QRTAFFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred CEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999998753
No 106
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=2.6e-46 Score=406.88 Aligned_cols=203 Identities=35% Similarity=0.549 Sum_probs=181.8
Q ss_pred CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH----hcceEEEcCCCCCC
Q 004826 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLF 545 (728)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l----R~~Ia~V~Qd~~LF 545 (728)
+++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|++||.|+.+++...+ |++|+||+|++.||
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~ 83 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALF 83 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCC
Confidence 35679999999999999999999999999999999999999999999999999999999888 88999999999999
Q ss_pred c-ccHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 546 N-DTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 546 ~-gTIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
. .|++|||.++.+. .+ ++++.++++.+++.+++.+.|. . ||||
T Consensus 84 ~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----------~-------------------LSGG 133 (363)
T TIGR01186 84 PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD-----------E-------------------LSGG 133 (363)
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChh-----------h-------------------CCHH
Confidence 7 5999999987421 22 3556777888888766655443 3 9999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHH-hhcCeEEEEeCCEEEEEcC
Q 004826 619 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 619 QrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti-~~aD~IiVld~G~Ive~Gt 695 (728)
||||++|||||+.+|+|||||||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|+|++.|+
T Consensus 134 q~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~ 213 (363)
T TIGR01186 134 MQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGT 213 (363)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCC
Confidence 9999999999999999999999999999999999999998774 379999999999975 6699999999999999999
Q ss_pred hHHHhhc
Q 004826 696 HDDLLTK 702 (728)
Q Consensus 696 h~eLl~~ 702 (728)
++|++++
T Consensus 214 ~~ei~~~ 220 (363)
T TIGR01186 214 PDEILRN 220 (363)
T ss_pred HHHHHhC
Confidence 9999875
No 107
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.2e-46 Score=376.77 Aligned_cols=198 Identities=36% Similarity=0.577 Sum_probs=182.5
Q ss_pred EEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 004826 459 IQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (728)
Q Consensus 459 I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 534 (728)
|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 5799999999754 3799999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 535 Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
|+||+|++.+|+.|++|||.++.. .+++++.++++.+++.+++..+|.|++|.+.+....
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------- 127 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGIN------------------- 127 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCc-------------------
Confidence 999999999999999999999753 456678888889999999999999999999988776
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHH-HHHHc-CCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
||||||||++|||||+.+|+++||||||++||+++.+.+.+. ++... +++|+|++||+++.++.||+|++|++|+
T Consensus 128 lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999988875 55543 4699999999999999999999999985
No 108
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-46 Score=392.29 Aligned_cols=217 Identities=33% Similarity=0.530 Sum_probs=191.2
Q ss_pred eEEEEEEEEEecCC--ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
-|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999742 4699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEcCCC--CCCcccHHHHHHcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 536 GVVPQDT--VLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 536 a~V~Qd~--~LF~gTIreNI~~g~~--~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
+||+|++ .++..|+.|||.++.. ..+++ ++.++++..++.++....| ..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------ 140 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREP-----------AR------------ 140 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------cc------------
Confidence 9999998 4778999999987632 23333 3456677777766544422 23
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~IiVl 685 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|
T Consensus 141 -------LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l 213 (277)
T PRK13642 141 -------LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVM 213 (277)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998764 79999999999999899999999
Q ss_pred eCCEEEEEcChHHHhhccc
Q 004826 686 ENGKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~g 704 (728)
++|++++.|+++|+++..+
T Consensus 214 ~~G~i~~~g~~~~~~~~~~ 232 (277)
T PRK13642 214 KAGEIIKEAAPSELFATSE 232 (277)
T ss_pred ECCEEEEeCCHHHHhcCHH
Confidence 9999999999999987544
No 109
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-46 Score=386.65 Aligned_cols=216 Identities=32% Similarity=0.526 Sum_probs=183.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
++++||+|+|++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++||
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 47899999997436799999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
||++.+|. .|++||+.++.. ..+ ++++.++++..++.+ +....+....
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~---------------- 135 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDP---------AEFADRYPHE---------------- 135 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhh----------------
Confidence 99999996 699999987531 112 223334444444321 0122233333
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~G 688 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|
T Consensus 136 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G 212 (242)
T cd03295 136 ---LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNG 212 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998753 799999999999764 59999999999
Q ss_pred EEEEEcChHHHhhc
Q 004826 689 KVIEQGSHDDLLTK 702 (728)
Q Consensus 689 ~Ive~Gth~eLl~~ 702 (728)
++++.|+++++.+.
T Consensus 213 ~i~~~~~~~~~~~~ 226 (242)
T cd03295 213 EIVQVGTPDEILRS 226 (242)
T ss_pred EEEEecCHHHHHcC
Confidence 99999999998754
No 110
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-46 Score=387.27 Aligned_cols=218 Identities=32% Similarity=0.502 Sum_probs=188.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCCCHHHHh
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLESLR 532 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~i~~~~lR 532 (728)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+++...+|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4899999999964 6799999999999999999999999999999999999984 699999999999988888999
Q ss_pred cceEEEcCCCCCC-cccHHHHHHcCCC--C--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 533 KSIGVVPQDTVLF-NDTIFHNIRYGRL--S--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF-~gTIreNI~~g~~--~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+.|+||||++.+| +.|++||+.++.. . .. ++++.++++..++.+.+.. .+|+.+ ..
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~----~~-------- 146 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RLDAPA----GK-------- 146 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hhcCCc----cc--------
Confidence 9999999999755 6799999987531 0 11 3456677777776554321 223322 23
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|
T Consensus 147 -----------LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i 215 (250)
T PRK14247 147 -----------LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYV 215 (250)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEE
Confidence 999999999999999999999999999999999999999999999877899999999999875 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++.+.
T Consensus 216 ~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVFTN 235 (250)
T ss_pred EEEECCeEEEECCHHHHHcC
Confidence 99999999999999999764
No 111
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.5e-46 Score=378.62 Aligned_cols=199 Identities=33% Similarity=0.533 Sum_probs=176.4
Q ss_pred EEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEc
Q 004826 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (728)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~ 539 (728)
+++||+++|++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ...|+.|+||+
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 468999999643689999999999999999999999999999999999999999999999998864 46788999999
Q ss_pred CCC--CCCcccHHHHHHcCCCCC--CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 540 QDT--VLFNDTIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 540 Qd~--~LF~gTIreNI~~g~~~~--sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
|++ .+|..|++||+.++.+.. .++++.++++..++.++..+.|. . |
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~-------------------L 127 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPL-----------S-------------------L 127 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCch-----------h-------------------C
Confidence 998 478899999999864322 24568888888888777665552 2 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH-cCCCeEEEeccCchHHhh-cCeEEEEeCCEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 691 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv 691 (728)
|||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++ .+++|+|++||+++.+.. ||+|++|++|++|
T Consensus 128 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 128 SGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999999999999999887 457999999999999875 9999999999985
No 112
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-46 Score=395.43 Aligned_cols=217 Identities=30% Similarity=0.541 Sum_probs=184.0
Q ss_pred eEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----CCHH
Q 004826 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----i~~~ 529 (728)
.|+++||+|+|++. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 38999999999742 479999999999999999999999999999999999999999999999999864 3466
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHHcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
.+|+.|+||+|+| .+|+.|++|||.++.. ..+.+ .+.++++..++++.+. ++ ....
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~------~~----~~~~------ 145 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELL------AR----SPFE------ 145 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhh------hC----Cccc------
Confidence 7889999999998 6899999999998732 23333 3445555555542211 11 2223
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-h
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-Q 678 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~ 678 (728)
||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .
T Consensus 146 -------------LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~ 212 (290)
T PRK13634 146 -------------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARY 212 (290)
T ss_pred -------------CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 999999999999999999999999999999999999999999988753 799999999999875 5
Q ss_pred cCeEEEEeCCEEEEEcChHHHhhcc
Q 004826 679 CDEIIVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gth~eLl~~~ 703 (728)
||||++|++|+|++.|+.+++.+..
T Consensus 213 ~drv~~l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 213 ADQIVVMHKGTVFLQGTPREIFADP 237 (290)
T ss_pred CCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999999999999999987543
No 113
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=6.5e-46 Score=404.06 Aligned_cols=213 Identities=30% Similarity=0.492 Sum_probs=187.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|+|
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFG-AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGI 80 (353)
T ss_pred EEEEEEEEEEeC-CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 489999999996 46799999999999999999999999999999999999999999999999999887764 678999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.||. .|++|||.|+... .+ ++++.++++..++.++..+.| ..
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----------~~--------------- 134 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYP-----------GQ--------------- 134 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCCh-----------hh---------------
Confidence 999999995 6999999987421 22 345666677766666554433 23
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~ 687 (728)
||||||||+||||||+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. -||+|+||++
T Consensus 135 ----LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~ 210 (353)
T TIGR03265 135 ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210 (353)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999988754 799999999999864 5999999999
Q ss_pred CEEEEEcChHHHhhcc
Q 004826 688 GKVIEQGSHDDLLTKA 703 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~ 703 (728)
|+|++.|+++|+.+..
T Consensus 211 G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 211 GVIEQVGTPQEIYRHP 226 (353)
T ss_pred CEEEEEcCHHHHHhCC
Confidence 9999999999998753
No 114
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.8e-46 Score=391.43 Aligned_cols=222 Identities=30% Similarity=0.469 Sum_probs=194.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|
T Consensus 11 ~l~i~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEEC-CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 599999999996 4689999999999999999999999999999999999999999999999999998888899999999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCC----------CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~----------~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|+|++.+|. .|+.||+.++.. ...++++.++++..++.+++...|. .
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~----------- 147 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----------S----------- 147 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----------c-----------
Confidence 999987765 499999997631 1123457778888888766555432 3
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|+
T Consensus 148 --------LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~ 219 (265)
T PRK10575 148 --------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLV 219 (265)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999988753 799999999999985 599999
Q ss_pred EEeCCEEEEEcChHHHhhccchHHHHHH
Q 004826 684 VLENGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
+|++|+|++.|+.+|+... ..+.+++.
T Consensus 220 ~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 246 (265)
T PRK10575 220 ALRGGEMIAQGTPAELMRG-ETLEQIYG 246 (265)
T ss_pred EEECCeEEEecCHHHhcCH-HHHHHHhC
Confidence 9999999999999998753 34556654
No 115
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-46 Score=393.36 Aligned_cols=217 Identities=30% Similarity=0.500 Sum_probs=191.8
Q ss_pred eEEEEEEEEEecC-----CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-HHHH
Q 004826 458 SIQFDNVHFSYLT-----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~-----~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~-~~~l 531 (728)
-|+++||+|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 4899999999973 357999999999999999999999999999999999999999999999999998754 4668
Q ss_pred hcceEEEcCCC--CCCcccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 532 RKSIGVVPQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 R~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
|+.++||||++ .+|..|+.||+.++.. ..+ ++++.++++..++.+++.+.| ..
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~-------- 144 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAP-----------HL-------- 144 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCc-----------cc--------
Confidence 89999999998 4777899999988631 122 355777888888887776655 22
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhhcCe
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDE 681 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~aD~ 681 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+..||+
T Consensus 145 -----------LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~ 213 (280)
T PRK13633 145 -----------LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADR 213 (280)
T ss_pred -----------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCE
Confidence 99999999999999999999999999999999999999999999875 37999999999999989999
Q ss_pred EEEEeCCEEEEEcChHHHhhccc
Q 004826 682 IIVLENGKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~~g 704 (728)
|++|++|+|++.|+++++.....
T Consensus 214 v~~l~~G~i~~~g~~~~~~~~~~ 236 (280)
T PRK13633 214 IIVMDSGKVVMEGTPKEIFKEVE 236 (280)
T ss_pred EEEEECCEEEEecCHHHHhcChH
Confidence 99999999999999999976543
No 116
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-46 Score=390.98 Aligned_cols=216 Identities=37% Similarity=0.586 Sum_probs=190.1
Q ss_pred eEEEEEEEEEec-CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
.|+++|++++|+ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 599999999997 3568999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCC--CCCcccHHHHHHcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDT--VLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~--~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
||+|++ .+++.|++|||.++.. ..+.+ .+.++++..++.+++.+.| ..
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------- 142 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEP-----------QN------------- 142 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCc-----------cc-------------
Confidence 999998 4667899999988632 12333 3556666677766655443 23
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~IiVld 686 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|+
T Consensus 143 ------LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~ 216 (271)
T PRK13632 143 ------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFS 216 (271)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998753 489999999999998999999999
Q ss_pred CCEEEEEcChHHHhhcc
Q 004826 687 NGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~ 703 (728)
+|++++.|+.+++.+..
T Consensus 217 ~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 217 EGKLIAQGKPKEILNNK 233 (271)
T ss_pred CCEEEEecCHHHHhcCH
Confidence 99999999999887654
No 117
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3.9e-46 Score=380.68 Aligned_cols=202 Identities=37% Similarity=0.532 Sum_probs=173.3
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH----H
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES----L 531 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~----l 531 (728)
|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 5789999999752 68999999999999999999999999999999999999999999999999998877433 4
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 532 RKSIGVVPQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~g-TIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
+++++||+|++.+|.+ |++|||.++... .+ ++++.++++..++.+.... ....
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~--------- 140 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNH-----------YPSE--------- 140 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhc-----------Chhh---------
Confidence 6789999999999986 999999886321 11 2345555555555443332 2233
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~I 682 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|
T Consensus 141 ----------LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v 210 (218)
T cd03255 141 ----------LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRI 210 (218)
T ss_pred ----------cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEE
Confidence 999999999999999999999999999999999999999999998764 79999999999999899999
Q ss_pred EEEeCCEE
Q 004826 683 IVLENGKV 690 (728)
Q Consensus 683 iVld~G~I 690 (728)
++|++|++
T Consensus 211 ~~l~~G~i 218 (218)
T cd03255 211 IELRDGKI 218 (218)
T ss_pred EEeeCCcC
Confidence 99999975
No 118
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-46 Score=374.41 Aligned_cols=198 Identities=31% Similarity=0.481 Sum_probs=176.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.+++++|+.+|+. ..||+||||+|++||+|+||||||||||||+++|+||.+|++|+|+++|.++.... ..++|
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCEEE
Confidence 5899999999975 78999999999999999999999999999999999999999999999999885554 47999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCCCC------CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~~------sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.||. -||+||+.++-... .++.+.++++.+++.+|-...|.
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~--------------------------- 129 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH--------------------------- 129 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc---------------------------
Confidence 999999998 49999999986432 23457888888899888777773
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchH-HhhcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTT-AMQCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLst-i~~aD~IiVld~ 687 (728)
.||||||||+||||||+.+|+||+||||.||||+.|...+++-|.++.+ ++|+++|||.++. +.-+|||+||.+
T Consensus 130 ---qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~ 206 (248)
T COG1116 130 ---QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206 (248)
T ss_pred ---ccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecC
Confidence 2999999999999999999999999999999999999999999887754 5999999999975 566999999999
Q ss_pred --CEEE
Q 004826 688 --GKVI 691 (728)
Q Consensus 688 --G~Iv 691 (728)
|+|.
T Consensus 207 ~P~~i~ 212 (248)
T COG1116 207 RPGRIG 212 (248)
T ss_pred CCccee
Confidence 5553
No 119
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.2e-46 Score=386.84 Aligned_cols=213 Identities=34% Similarity=0.590 Sum_probs=183.7
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-----------
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----------- 527 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~----------- 527 (728)
|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++
T Consensus 1 i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFG-ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeC-CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 57999999996 468999999999999999999999999999999999999999999999999997653
Q ss_pred --HHHHhcceEEEcCCCCCCc-ccHHHHHHcCCC---CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccc
Q 004826 528 --LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGR 597 (728)
Q Consensus 528 --~~~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~---~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~ 597 (728)
...+|+.++||+|++.+|. .|++||+.++.. ... ++++.++++..++.+++.+. ...
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~-- 146 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHM-----------PAQ-- 146 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcC-----------hhh--
Confidence 3467899999999999885 799999987521 122 23455556665655544433 233
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchH
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTT 675 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLst 675 (728)
||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..
T Consensus 147 -----------------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 147 -----------------LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF 209 (252)
T ss_pred -----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 999999999999999999999999999999999999999999988753 7999999999999
Q ss_pred Hh-hcCeEEEEeCCEEEEEcChHHHhhc
Q 004826 676 AM-QCDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 676 i~-~aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
+. .||+|++|++|++++.|+++++.+.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 237 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIFRQ 237 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 85 5999999999999999999999764
No 120
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.5e-46 Score=391.69 Aligned_cols=218 Identities=35% Similarity=0.534 Sum_probs=187.0
Q ss_pred EEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH----hcce
Q 004826 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSI 535 (728)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l----R~~I 535 (728)
.++||+++|. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+ ++++
T Consensus 26 ~~~~~~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTG-QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcC-CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 4667787775 4579999999999999999999999999999999999999999999999999988876554 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHHcCCC--CC----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLFN-DTIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF~-gTIreNI~~g~~--~~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+||||++.+|. .|++|||.++.. .. .++++.++++..++.+++...|. .
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~------------- 160 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD-----------E------------- 160 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----------c-------------
Confidence 99999999984 699999987521 11 23456777888888777666552 3
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVL 685 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVl 685 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|
T Consensus 161 ------LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l 234 (269)
T cd03294 161 ------LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIM 234 (269)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999988743 799999999999875 59999999
Q ss_pred eCCEEEEEcChHHHhhc-cchHHH
Q 004826 686 ENGKVIEQGSHDDLLTK-AGRYAQ 708 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~-~g~Y~~ 708 (728)
++|++++.|+++|+++. ...|.+
T Consensus 235 ~~G~i~~~g~~~~~~~~~~~~~~~ 258 (269)
T cd03294 235 KDGRLVQVGTPEEILTNPANDYVR 258 (269)
T ss_pred ECCEEEEeCCHHHHHhCcCcHHHH
Confidence 99999999999999864 344543
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7.4e-46 Score=376.83 Aligned_cols=203 Identities=31% Similarity=0.548 Sum_probs=178.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+|+|+ ++++|+|+||+|++| ++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..+|+.++||
T Consensus 1 i~~~~~~~~~~-~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYG-KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEEC-CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 57999999996 458999999999999 99999999999999999999999999999999999998877 7789999999
Q ss_pred cCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+|++.+|.+ |++|||.+... ..+ ++++.++++..++.++.+ +.+ ..
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~----~~---------------- 130 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-------KKI----GS---------------- 130 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-------Cch----hh----------------
Confidence 999999986 99999986421 112 345667777777765433 222 22
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeEEEEeCCEE
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKV 690 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~IiVld~G~I 690 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|+|
T Consensus 131 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 ---LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999877899999999999986 5999999999999
Q ss_pred EEEc
Q 004826 691 IEQG 694 (728)
Q Consensus 691 ve~G 694 (728)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 9875
No 122
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-46 Score=385.95 Aligned_cols=219 Identities=34% Similarity=0.531 Sum_probs=185.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~~ 530 (728)
.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYG-NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 489999999996 4689999999999999999999999999999999999997 489999999999864 44567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCC--C-----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~--~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.++||+|++.+|+.|++|||.++... . .++++.++++..++++.. ++.+ ......
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~----~~~~~~-------- 147 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---KDNL----DRNAQA-------- 147 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---HHHh----ccChhh--------
Confidence 88999999999999999999999876321 1 123455566666654311 1112 223333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+++|+|+|||+++.+.. ||+|
T Consensus 148 -----------LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i 216 (251)
T PRK14251 148 -----------FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQT 216 (251)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEE
Confidence 9999999999999999999999999999999999999999999988778999999999998765 9999
Q ss_pred EEEeCCEEEEEcChHHHhhcc
Q 004826 683 IVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~~ 703 (728)
++|++|+|++.|+++++....
T Consensus 217 ~~l~~G~i~~~~~~~~~~~~~ 237 (251)
T PRK14251 217 AFLMNGDLIEAGPTEEMFIAP 237 (251)
T ss_pred EEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999987543
No 123
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.7e-46 Score=382.17 Aligned_cols=208 Identities=31% Similarity=0.471 Sum_probs=178.6
Q ss_pred eEEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---H
Q 004826 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---l 531 (728)
-|+++||+|+|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 48999999999742 57999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 532 R-KSIGVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 R-~~Ia~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
| +.|+||+|++.+|.. |++||+.++.. ..+ ++++.++++..++.+...+ ....
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~-------- 145 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANH-----------RPSE-------- 145 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------Chhh--------
Confidence 3 689999999999975 99999987421 112 2345556666555443322 2233
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhhcCe
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDE 681 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~aD~ 681 (728)
||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..+|+
T Consensus 146 -----------LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~ 214 (233)
T PRK11629 146 -----------LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSR 214 (233)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCE
Confidence 99999999999999999999999999999999999999999999874 47999999999999999999
Q ss_pred EEEEeCCEEEEEcC
Q 004826 682 IIVLENGKVIEQGS 695 (728)
Q Consensus 682 IiVld~G~Ive~Gt 695 (728)
+++|++|+|++.|+
T Consensus 215 ~~~l~~G~i~~~~~ 228 (233)
T PRK11629 215 QLEMRDGRLTAELS 228 (233)
T ss_pred EEEEECCEEEEEec
Confidence 99999999999876
No 124
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-43 Score=364.16 Aligned_cols=458 Identities=18% Similarity=0.204 Sum_probs=311.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 199 RTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKF 278 (728)
Q Consensus 199 ~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~ 278 (728)
........++.++.++|.++.++++..|+..+++-.++.+...++.|.+.+..-+. .+..+....+..+...+.+ .+.
T Consensus 68 s~lg~t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~~s-~lp~~~qa~il~l~s~aYL-ayL 145 (546)
T COG4615 68 SQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFAFS-RLPELVQAIILTLGSAAYL-AYL 145 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeehHh-hhHHHHHHHHHHHHHHHHH-HHh
Confidence 34455678899999999999999999999999999999998888888877763322 2233333322222222222 234
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHH--HHHHHHHHHHHHHHH
Q 004826 279 GAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFE--AEQYDEFLRRYEDAA 356 (728)
Q Consensus 279 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~--~~~~~~~~~~~~~~~ 356 (728)
++.+..+..+++++.++..........+.....++...++.+..+..+.|.++.+...-..+. .+.|....+.+++..
T Consensus 146 Sp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~ 225 (546)
T COG4615 146 SPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHI 225 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhh
Confidence 555444444444333333222222222333344555566777778889999999876543322 233332222222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 357 LKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQL 436 (728)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~l 436 (728)
............+.++++...+..++|+.. .-+.-+......+...+..+..|+.+..+.+..+.+|.++++++.++
T Consensus 226 ~~~n~f~~la~~~~ni~l~~lIGlvf~lal---~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakl 302 (546)
T COG4615 226 IRANTFHLLAVNWSNIMLLGLIGLVFWLAL---SLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL 302 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH---hhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 111111001111222222222222222211 11222333344455555667899999999999999999999999987
Q ss_pred hcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEE
Q 004826 437 LEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI 516 (728)
Q Consensus 437 l~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I 516 (728)
-..|+ ..+-..+.+.+. -..|+++||.|+|++..-=+..||++|++||.|-|+|.+||||||+++||.|+|.|++|+|
T Consensus 303 e~~~~-~a~~~~~q~~p~-~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I 380 (546)
T COG4615 303 ELAPY-KADFPRPQAFPD-WKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380 (546)
T ss_pred hcCCc-cccCCCCCcCCc-ccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence 54332 222112222222 2479999999999876566889999999999999999999999999999999999999999
Q ss_pred EECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCC-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccc
Q 004826 517 RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (728)
Q Consensus 517 ~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~ 595 (728)
++||.|++.-+++++|+-++-|+-|-+||+.++ |.+. ++.+.+..-++.-.+..- |.+-++--
T Consensus 381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~k---------tsl~d~~f- 444 (546)
T COG4615 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHK---------TSLNDGRF- 444 (546)
T ss_pred eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhh---------hcccCCcc-
Confidence 999999999999999999999999999999764 4333 677777666555544332 22222111
Q ss_pred cchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCc
Q 004826 596 GRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRL 673 (728)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRL 673 (728)
.+-.||-|||.|+|+-=|++-+.||++|||=.+--||.=.+...+.+-.+. .|||+|.|||+-
T Consensus 445 ---------------s~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 445 ---------------SNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred ---------------cccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 112299999999999999999999999999999999999998887754332 589999999999
Q ss_pred hHHhhcCeEEEEeCCEEEEEc
Q 004826 674 TTAMQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 674 sti~~aD~IiVld~G~Ive~G 694 (728)
.....|||++-|++|+++|.-
T Consensus 510 ~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999863
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=390.32 Aligned_cols=214 Identities=29% Similarity=0.511 Sum_probs=186.5
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-HHHHhcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~-~~~lR~~Ia~ 537 (728)
|+++||+|+|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+ ...+++.|+|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 789999999975567999999999999999999999999999999999999999999999999998875 4678899999
Q ss_pred EcCCCC--CCcccHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 538 VPQDTV--LFNDTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 538 V~Qd~~--LF~gTIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
|+|++. +|+.|++|||.++... .+ ++++.++++..++.+++...| ..
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~-------------- 136 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSP-----------KT-------------- 136 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCc-----------cc--------------
Confidence 999985 6788999999886321 22 234555566666655443322 23
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEeCC
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENG 688 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G 688 (728)
||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.++.||+|++|++|
T Consensus 137 -----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G 211 (274)
T PRK13644 137 -----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRG 211 (274)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999998865 479999999999999999999999999
Q ss_pred EEEEEcChHHHhhc
Q 004826 689 KVIEQGSHDDLLTK 702 (728)
Q Consensus 689 ~Ive~Gth~eLl~~ 702 (728)
++++.|+.+++...
T Consensus 212 ~i~~~g~~~~~~~~ 225 (274)
T PRK13644 212 KIVLEGEPENVLSD 225 (274)
T ss_pred EEEEECCHHHHhcC
Confidence 99999999988654
No 126
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=389.05 Aligned_cols=220 Identities=34% Similarity=0.537 Sum_probs=190.5
Q ss_pred CceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCH
Q 004826 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTL 528 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--i~~ 528 (728)
.+.|+++||+|+|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 23 ~~~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYG-DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEEC-CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 34699999999996 46899999999999999999999999999999999999984 89999999999875 456
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHHcCCC--CC-----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 529 ESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 529 ~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
..+|+.++||+|++.+|..|++|||.++.. .. .++++.++++.+++.+++.. ..+..+..
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~------ 168 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKD-------RLHENAFG------ 168 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHH-------HhhCCccc------
Confidence 678999999999999999999999987621 11 12346677777777654432 33444444
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcC
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCD 680 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD 680 (728)
||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||
T Consensus 169 -------------LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d 235 (272)
T PRK14236 169 -------------LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSD 235 (272)
T ss_pred -------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999877899999999999875 599
Q ss_pred eEEEEeCCEEEEEcChHHHhhc
Q 004826 681 EIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~eLl~~ 702 (728)
+|++|++|+|++.|+++++.+.
T Consensus 236 ~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 236 YTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred EEEEEECCEEEecCCHHHHhcC
Confidence 9999999999999999998754
No 127
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=2.3e-46 Score=357.73 Aligned_cols=208 Identities=33% Similarity=0.560 Sum_probs=188.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHHhcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~---~~~lR~~I 535 (728)
|+|+||+..|++++++|+||||+|++||++-|+|||||||||++|||++.-.|+.|+|.++|+|+..+. ...||++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 899999999998888999999999999999999999999999999999999999999999999988876 55699999
Q ss_pred EEEcCCCCCC-cccHHHHHHcCC-----C-CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLF-NDTIFHNIRYGR-----L-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF-~gTIreNI~~g~-----~-~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
|+|+||..|. +-|+.||++|.- + ..-.+++.++++.+++.+-...||.
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~------------------------- 136 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS------------------------- 136 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-------------------------
Confidence 9999999977 569999998863 2 2235678899999999999998884
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhc-CeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQC-DEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~a-D~IiVld 686 (728)
.|||||+||+|||||++.+|++||=||||-+||+++...|++-++++. .|.||++.||..+.+..+ -|++.++
T Consensus 137 -----~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~ 211 (223)
T COG2884 137 -----QLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALE 211 (223)
T ss_pred -----ccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEe
Confidence 299999999999999999999999999999999999999999988764 589999999999999885 5789999
Q ss_pred CCEEEEEcCh
Q 004826 687 NGKVIEQGSH 696 (728)
Q Consensus 687 ~G~Ive~Gth 696 (728)
+|+++....+
T Consensus 212 ~Grl~~d~~~ 221 (223)
T COG2884 212 DGRLVRDESR 221 (223)
T ss_pred CCEEEecccc
Confidence 9999976554
No 128
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=385.68 Aligned_cols=223 Identities=28% Similarity=0.519 Sum_probs=193.9
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+++...+++.++||
T Consensus 3 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYG-TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEEC-CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 78999999996 46899999999999999999999999999999999999999999999999999988888889999999
Q ss_pred cCCCCCCcc-cHHHHHHcCCC----------CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 539 PQDTVLFND-TIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~----------~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
||++.+|.+ |+.||+.++.. ...++++.++++..++.+..... ...
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~------------ 138 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----------LTD------------ 138 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----------ccc------------
Confidence 999999876 99999998631 11233566677777776544332 223
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVl 685 (728)
||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++|
T Consensus 139 -------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l 211 (255)
T PRK11231 139 -------LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVL 211 (255)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999998875 4799999999999876 59999999
Q ss_pred eCCEEEEEcChHHHhhccchHHHHHHhh
Q 004826 686 ENGKVIEQGSHDDLLTKAGRYAQLWGQQ 713 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~g~Y~~l~~~q 713 (728)
++|++++.|+++++.. ...+.+++..+
T Consensus 212 ~~G~i~~~~~~~~~~~-~~~~~~~~~~~ 238 (255)
T PRK11231 212 ANGHVMAQGTPEEVMT-PGLLRTVFDVE 238 (255)
T ss_pred ECCeEEEEcCHHHhcC-HHHHHHHhCCC
Confidence 9999999999999875 34566777543
No 129
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=1.3e-45 Score=406.05 Aligned_cols=222 Identities=31% Similarity=0.533 Sum_probs=196.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++...++++|+|
T Consensus 3 ~L~~~nls~~y~-~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFG-DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 489999999996 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCC-CcccHHHHHHcCCC----------CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 538 VPQDTVL-FNDTIFHNIRYGRL----------SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~----------~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|+|++.+ |+.|++||+.++.. ..+++.+.++++..++.++..+. + ..
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~-------~----~~----------- 139 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP-------V----TS----------- 139 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCC-------h----hh-----------
Confidence 9999987 68899999988742 11244578888888887765432 1 22
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhcCeEEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIV 684 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~aD~IiV 684 (728)
||||||||++|||||+++|+||||||||++||+.+...+++.|+++. .++|+|+++|+++.+ +.||+|++
T Consensus 140 --------LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~ 211 (402)
T PRK09536 140 --------LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVL 211 (402)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999999875 478999999999998 56999999
Q ss_pred EeCCEEEEEcChHHHhhccchHHHHHH
Q 004826 685 LENGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 685 ld~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
|++|++++.|+++|++.. ....++|.
T Consensus 212 l~~G~iv~~G~~~ev~~~-~~l~~~~~ 237 (402)
T PRK09536 212 LADGRVRAAGPPADVLTA-DTLRAAFD 237 (402)
T ss_pred EECCEEEEecCHHHHhCc-HHHHHHhC
Confidence 999999999999998864 34444543
No 130
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=385.05 Aligned_cols=218 Identities=32% Similarity=0.481 Sum_probs=185.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC--C---CCCEEEECCEeCCCC--CHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICEV--TLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~--p---~~G~I~idG~di~~i--~~~~ 530 (728)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||+++... +...
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYN-KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEEC-CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 489999999996 4679999999999999999999999999999999999954 6 499999999998653 4567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--CC-----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.++||||++.+|+.|++||+.++.. .. .++++.++++.+++.+.+. +........
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~-------- 148 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALG-------- 148 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCccc--------
Confidence 8899999999999999999999987521 11 1234555666666544332 223333434
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|
T Consensus 149 -----------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i 217 (252)
T PRK14239 149 -----------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRT 217 (252)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999998877899999999999875 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++.+.
T Consensus 218 ~~l~~G~i~~~g~~~~~~~~ 237 (252)
T PRK14239 218 GFFLDGDLIEYNDTKQMFMN 237 (252)
T ss_pred EEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999764
No 131
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=401.84 Aligned_cols=212 Identities=34% Similarity=0.571 Sum_probs=186.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .++.|+|
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 4899999999964 679999999999999999999999999999999999999999999999999987654 4678999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCC------CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRL------SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~------~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.| ..
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~----------- 136 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----------AQ----------- 136 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hh-----------
Confidence 999999997 599999998732 122 245666777777766554443 12
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|+
T Consensus 137 --------LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~ 208 (353)
T PRK10851 137 --------LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVV 208 (353)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999998764 6899999999998655 99999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
||++|+|++.|+++|+..+
T Consensus 209 vl~~G~i~~~g~~~~i~~~ 227 (353)
T PRK10851 209 VMSQGNIEQAGTPDQVWRE 227 (353)
T ss_pred EEECCEEEEEcCHHHHHhC
Confidence 9999999999999999865
No 132
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.1e-45 Score=374.84 Aligned_cols=203 Identities=26% Similarity=0.414 Sum_probs=179.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+. ..+|+.++||
T Consensus 1 l~~~~l~~~~~-~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYG-KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEEC-CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 57899999995 46899999999999999999999999999999999999999999999999998765 5678899999
Q ss_pred cCCCCCC-cccHHHHHHcCC--CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 539 PQDTVLF-NDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~--~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
||++.+| +.|++|||.++. ...+++++.++++..++.+...+. ... |
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~-------------------L 127 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKK-----------VKG-------------------F 127 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhh-----------Hhh-------------------C
Confidence 9999888 579999998763 223567788888888887655432 223 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQ 693 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~ 693 (728)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++.
T Consensus 128 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 128 SLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999998865 47999999999998865 999999999999987
Q ss_pred c
Q 004826 694 G 694 (728)
Q Consensus 694 G 694 (728)
|
T Consensus 208 g 208 (208)
T cd03268 208 G 208 (208)
T ss_pred C
Confidence 6
No 133
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-46 Score=366.83 Aligned_cols=214 Identities=35% Similarity=0.563 Sum_probs=191.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHHhcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLRKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~---~~~lR~~ 534 (728)
.|+++||+-.||+++++|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|.++|.++.... +..+|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 5899999999998899999999999999999999999999999999999999999999999999998888 7778999
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCCCC-----------CCHH---HHHHHHHHhccHHHHHhCCCcccchhhccccccchh
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGRLS-----------ATEE---EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSL 599 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~~~-----------~sde---ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~ 599 (728)
|||++|++.|-.. |+.+|+..|.-. .+.+ ...+|++..++.|.--. +-.+
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~q-----------ra~~---- 147 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQ-----------RAST---- 147 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHH-----------Hhcc----
Confidence 9999999999865 999999888632 3333 35677788888776433 3333
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM 677 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~ 677 (728)
|||||+||++|||||.++|+|++=|||+|+|||++.+.|++.|++.. .|.|+|+.-|.+.+.+
T Consensus 148 ---------------LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~ 212 (258)
T COG3638 148 ---------------LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAK 212 (258)
T ss_pred ---------------CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHH
Confidence 99999999999999999999999999999999999999999998764 5799999999999976
Q ss_pred h-cCeEEEEeCCEEEEEcChHHHhh
Q 004826 678 Q-CDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 678 ~-aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
. ||||+-|++|+||-.|+.+||-+
T Consensus 213 ~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 213 KYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHhhheEecCCcEEEeCChhhhhH
Confidence 5 99999999999999999999654
No 134
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-45 Score=384.49 Aligned_cols=219 Identities=33% Similarity=0.537 Sum_probs=187.5
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHH
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--i~~~ 529 (728)
+.|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+..
T Consensus 2 ~~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYG-DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEEC-CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 4699999999996 45799999999999999999999999999999999999863 69999999999875 4566
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHHcCCC--CC-----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
.+|+.|+||+|++.+|+.|++|||.++.. .. .++++.++++.+++.+.+.. ........
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~------- 146 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKD-------RLKKSALG------- 146 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHH-------HHhcCCCC-------
Confidence 78999999999999999999999988631 11 23445566666666544321 22333334
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCe
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~ 681 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+
T Consensus 147 ------------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~ 214 (250)
T PRK14240 147 ------------LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDK 214 (250)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCE
Confidence 9999999999999999999999999999999999999999999988778999999999998755 999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++|++|++++.|+++++...
T Consensus 215 v~~l~~G~i~~~~~~~~~~~~ 235 (250)
T PRK14240 215 TAFFLNGEIVEFGDTVDLFTN 235 (250)
T ss_pred EEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999998754
No 135
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=384.76 Aligned_cols=218 Identities=33% Similarity=0.543 Sum_probs=186.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC---CCC--CCCEEEECCEeCCCC--CHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS---FDT--HSGSIRIDGQDICEV--TLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl---y~p--~~G~I~idG~di~~i--~~~~ 530 (728)
.|+++||++.|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+ ++| ++|+|.+||+++.+. +...
T Consensus 3 ~l~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYG-DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEEC-CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 589999999996 46799999999999999999999999999999999997 454 599999999998764 3567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--CC-----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.|+||||++.+|..|++|||.++.. .. .++++.++++..++.+++. +...+....
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~-------- 146 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFA-------- 146 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCccc--------
Confidence 8899999999999999999999987531 11 2234566666666655443 223344444
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|
T Consensus 147 -----------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v 215 (250)
T PRK14245 147 -----------LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKT 215 (250)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEE
Confidence 999999999999999999999999999999999999999999999877899999999999885 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++.+.
T Consensus 216 ~~l~~G~~~~~~~~~~~~~~ 235 (250)
T PRK14245 216 AFFYMGEMVEYDDTKKIFTN 235 (250)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999999754
No 136
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-45 Score=388.02 Aligned_cols=218 Identities=29% Similarity=0.487 Sum_probs=185.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~~ 530 (728)
-|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...
T Consensus 21 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYG-EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred eEEEEEEEEEeC-CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 599999999996 4679999999999999999999999999999999999865 799999999999875 44567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC---C----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL---S----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~---~----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.|+||+|++.+|.+|++||+.++.. . ..++.+.++++..++.+.+. .........
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~-------- 164 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALS-------- 164 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCccc--------
Confidence 8899999999999999999999987521 1 11233555666665543221 122233333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|
T Consensus 165 -----------LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v 233 (268)
T PRK14248 165 -----------LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRT 233 (268)
T ss_pred -----------CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999877899999999999775 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++...
T Consensus 234 ~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 234 AFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred EEEECCEEEEeCCHHHHHhC
Confidence 99999999999999998764
No 137
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=386.75 Aligned_cols=218 Identities=34% Similarity=0.532 Sum_probs=185.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~i--~~~~ 530 (728)
.|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+. +...
T Consensus 12 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 90 (258)
T PRK14268 12 QIKVENLNLWYG-EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVE 90 (258)
T ss_pred eEEEeeeEEEeC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHH
Confidence 699999999996 46799999999999999999999999999999999999985 799999999998653 3456
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
+|+.++||+|++.+|..|++|||.++.. ..+. +++.++++.+++.+++. +.+++ ....
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~---~~~~~----~~~~--------- 154 (258)
T PRK14268 91 LRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETS---DRLKS----PALS--------- 154 (258)
T ss_pred HhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchh---hhhcC----Chhh---------
Confidence 7889999999999999999999987531 1222 23555666666543221 12232 2333
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|+|+|||++..+.+ ||+|+
T Consensus 155 ----------LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~ 224 (258)
T PRK14268 155 ----------LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTG 224 (258)
T ss_pred ----------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999988778999999999998855 99999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
+|++|+|++.|+++++.+.
T Consensus 225 ~l~~G~i~~~~~~~~~~~~ 243 (258)
T PRK14268 225 FFLMGELIEFGQTRQIFHN 243 (258)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999999754
No 138
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.3e-45 Score=376.95 Aligned_cols=205 Identities=29% Similarity=0.501 Sum_probs=176.1
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|+.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 7899999999743 179999999999999999999999999999999999999999999999999976 456788999
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+||||++.+|.. |++||+.+... ..+ ++++.++++..++.+.+. .....
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~------------- 136 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLD-----------RRVGG------------- 136 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHh-----------hhhhh-------------
Confidence 999999999985 99999976421 122 234555666666554433 23333
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|+
T Consensus 137 ------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~ 210 (218)
T cd03266 137 ------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLH 210 (218)
T ss_pred ------cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEE
Confidence 99999999999999999999999999999999999999999998875 47999999999998765 99999999
Q ss_pred CCEEEEEc
Q 004826 687 NGKVIEQG 694 (728)
Q Consensus 687 ~G~Ive~G 694 (728)
+|++++.|
T Consensus 211 ~G~i~~~~ 218 (218)
T cd03266 211 RGRVVYEG 218 (218)
T ss_pred CCEEeecC
Confidence 99999865
No 139
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-46 Score=386.58 Aligned_cols=218 Identities=29% Similarity=0.484 Sum_probs=186.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCCCC--HHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEVT--LES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~i~--~~~ 530 (728)
+=+++||+|+|+ ++++|+|+||+|+|||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+ ...
T Consensus 5 ~~~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 83 (251)
T PRK14244 5 HASVKNLNLWYG-SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVL 83 (251)
T ss_pred EEEeeeEEEEEC-CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHH
Confidence 347999999996 4689999999999999999999999999999999999986 47999999999987653 346
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--C------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
+|+.++||||++.+|.+|++|||.++.. + ..++++.++++..++.+++. +.+...+..
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~------- 149 (251)
T PRK14244 84 LRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELG-------DRLKDSAFE------- 149 (251)
T ss_pred HhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhh-------hHhhcChhh-------
Confidence 7899999999999999999999987621 1 11344566667776654322 223334444
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCe
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~ 681 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+
T Consensus 150 ------------LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~ 217 (251)
T PRK14244 150 ------------LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDR 217 (251)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCE
Confidence 9999999999999999999999999999999999999999999988778999999999999865 999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++|++|+|++.|+++++.+.
T Consensus 218 i~~l~~G~i~~~~~~~~~~~~ 238 (251)
T PRK14244 218 VAFFQSGRIVEYNTTQEIFKN 238 (251)
T ss_pred EEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999764
No 140
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-45 Score=386.76 Aligned_cols=219 Identities=32% Similarity=0.470 Sum_probs=189.7
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHH
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~ 529 (728)
..|+++||+|+|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+..
T Consensus 19 ~~l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 19 IALSTKDLHVYYG-KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred eEEEEeeEEEEEC-CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 4699999999995 5789999999999999999999999999999999999997 589999999999864 4466
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~--~-s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
.+|+.|+||||++.+|..|++|||.++... . + ++++.++++..++.+++. +.+......
T Consensus 98 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~------- 163 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALT------- 163 (267)
T ss_pred HHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCccc-------
Confidence 789999999999999999999999886321 1 1 244566677777765543 223344434
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCe
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDE 681 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~ 681 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+
T Consensus 164 ------------LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~ 231 (267)
T PRK14237 164 ------------LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDY 231 (267)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCE
Confidence 999999999999999999999999999999999999999999999877899999999999875 5999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++|++|++++.|+++++.+.
T Consensus 232 i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 232 TAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred EEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999764
No 141
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=389.87 Aligned_cols=215 Identities=33% Similarity=0.543 Sum_probs=192.4
Q ss_pred eEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCC---CEEEECCEeCCCCCHHHHhc
Q 004826 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESLRK 533 (728)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~di~~i~~~~lR~ 533 (728)
.|+++|++|+|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++ |+|.+||.++...+...+|+
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 6999999999974 3579999999999999999999999999999999999999998 89999999999888888899
Q ss_pred ceEEEcCCC--CCCcccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 534 SIGVVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 534 ~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
+|+||+|++ .+++.|++|||.++.+ ..+. +++.++++..++.++....| ..
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~---------- 143 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEP-----------AN---------- 143 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCc-----------cc----------
Confidence 999999998 4678999999988632 2333 34677888888877766655 23
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEII 683 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~Ii 683 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|+
T Consensus 144 ---------LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~ 214 (282)
T PRK13640 144 ---------LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVL 214 (282)
T ss_pred ---------CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999988753 799999999999999999999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
+|++|++++.|+++++.+.
T Consensus 215 ~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 215 VLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999988653
No 142
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=8.9e-46 Score=376.98 Aligned_cols=201 Identities=36% Similarity=0.582 Sum_probs=177.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---HHhcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~---~lR~~I 535 (728)
|+++|++++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 78999999996456899999999999999999999999999999999999999999999999999887643 478899
Q ss_pred EEEcCCCCCCc-ccHHHHHHcCC------CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLFN-DTIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF~-gTIreNI~~g~------~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+||+|++.+|. .|++||+.++. +...++++.++++..++.+.+...| ..
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------- 137 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQ------------- 137 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hh-------------
Confidence 99999999996 69999998752 1122456777888888776655543 13
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|+
T Consensus 138 ------LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 138 ------LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred ------CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEec
Confidence 99999999999999999999999999999999999999999998875 47999999999999876 99999999
Q ss_pred CCE
Q 004826 687 NGK 689 (728)
Q Consensus 687 ~G~ 689 (728)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 985
No 143
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=384.84 Aligned_cols=218 Identities=29% Similarity=0.496 Sum_probs=186.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC--C---CCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~--p---~~G~I~idG~di~~--i~~~~ 530 (728)
-|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+...
T Consensus 12 ~l~i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 12 VYQINGMNLWYG-QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred eEEEeeEEEEEC-CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 599999999996 4679999999999999999999999999999999999997 3 59999999999864 45567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCC---CCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS---ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~---~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.|+||||++.+|..|++||+.++... .++ +++.++++..++.+++. ..+......
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~-------- 155 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALS-------- 155 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCccc--------
Confidence 88999999999999999999999876321 122 23445566666654432 122333434
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|
T Consensus 156 -----------LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i 224 (259)
T PRK14274 156 -----------LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQT 224 (259)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999877899999999999876 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|+|++.|+++++.+.
T Consensus 225 ~~l~~G~i~~~g~~~~~~~~ 244 (259)
T PRK14274 225 AFFYMGELVECNDTNKMFSN 244 (259)
T ss_pred EEEECCEEEEECCHHHHhhC
Confidence 99999999999999998754
No 144
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.2e-45 Score=386.34 Aligned_cols=223 Identities=27% Similarity=0.431 Sum_probs=185.3
Q ss_pred EEEEEEEEEecC--------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH
Q 004826 459 IQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES 530 (728)
Q Consensus 459 I~f~nVsF~Y~~--------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~ 530 (728)
|+++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 789999999963 468999999999999999999999999999999999999999999999999998887643
Q ss_pred ---HhcceEEEcCCCC--CC-cccHHHHHHcCCC---CC----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccc
Q 004826 531 ---LRKSIGVVPQDTV--LF-NDTIFHNIRYGRL---SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGR 597 (728)
Q Consensus 531 ---lR~~Ia~V~Qd~~--LF-~gTIreNI~~g~~---~~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~ 597 (728)
+|+.|+||+|++. ++ ..|++|||.++.. .. .++++.++++..++.+ .........
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~-- 150 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQ-- 150 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhh--
Confidence 6789999999983 44 4799999965321 11 1234455555554421 112223333
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchH
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTT 675 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLst 675 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..
T Consensus 151 -----------------LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~ 213 (265)
T TIGR02769 151 -----------------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRL 213 (265)
T ss_pred -----------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 999999999999999999999999999999999999999999998754 7999999999999
Q ss_pred Hh-hcCeEEEEeCCEEEEEcChHHHhhc-cchHHHHH
Q 004826 676 AM-QCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLW 710 (728)
Q Consensus 676 i~-~aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~l~ 710 (728)
+. .||+|++|++|++++.|++++++.. +..|+++.
T Consensus 214 ~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 214 VQSFCQRVAVMDKGQIVEECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred HHHHhcEEEEEeCCEEEEECCHHHHcCCCCHHHHHHH
Confidence 87 5999999999999999999999874 34454454
No 145
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=379.84 Aligned_cols=219 Identities=28% Similarity=0.450 Sum_probs=182.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia 536 (728)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++... +|+.++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeC-CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 489999999996 468999999999999999999999999999999999999999999999999999887654 678899
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
||+|++.+|.+ |++|||.++....+.++..+.+ ++.++.++...++ ....... |
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~~l~~~-~~~~~~~-------------------L 138 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFPRLHER-RIQRAGT-------------------M 138 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHHHHHHH-HhCchhh-------------------C
Confidence 99999999985 9999999864322222222221 2222222211111 1122223 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhcCeEEEEeCCEEEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~aD~IiVld~G~Ive~ 693 (728)
|||||||++|||||+++|+||||||||++||+++.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.
T Consensus 139 S~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (237)
T PRK11614 139 SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218 (237)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEee
Confidence 9999999999999999999999999999999999999999998875 479999999999865 56999999999999999
Q ss_pred cChHHHhhc
Q 004826 694 GSHDDLLTK 702 (728)
Q Consensus 694 Gth~eLl~~ 702 (728)
|+++++...
T Consensus 219 ~~~~~~~~~ 227 (237)
T PRK11614 219 DTGDALLAN 227 (237)
T ss_pred CCHHHHhcC
Confidence 999999753
No 146
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=1.4e-45 Score=380.28 Aligned_cols=216 Identities=27% Similarity=0.489 Sum_probs=180.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH-hcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~Ia~ 537 (728)
|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |+.++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYG-KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeC-CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 57899999996 4679999999999999999999999999999999999999999999999999988876654 578999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCC--CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~--~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
+||++.+|.+ |++||+.++.+. ...++..+ .+++.++.+ |++.........
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~------------------- 133 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASS------------------- 133 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhh-------------------
Confidence 9999999987 999999876321 22222111 122334333 344333333334
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEEeCCEEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIE 692 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVld~G~Ive 692 (728)
||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+. .||+|++|++|++++
T Consensus 134 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 213 (232)
T cd03218 134 LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA 213 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998875 4789999999997655 599999999999999
Q ss_pred EcChHHHhh
Q 004826 693 QGSHDDLLT 701 (728)
Q Consensus 693 ~Gth~eLl~ 701 (728)
.|+++++..
T Consensus 214 ~~~~~~~~~ 222 (232)
T cd03218 214 EGTPEEIAA 222 (232)
T ss_pred EeCHHHhhc
Confidence 999998864
No 147
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.4e-45 Score=377.52 Aligned_cols=203 Identities=33% Similarity=0.532 Sum_probs=173.0
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---Hh
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR 532 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---lR 532 (728)
|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999742 57999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 533 -KSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 533 -~~Ia~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
+.|+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++++.... ....
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~--------- 141 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH-----------RPSE--------- 141 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------Chhh---------
Confidence 68999999999995 699999987421 112 2234455555555443332 2233
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhhcCeE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~aD~I 682 (728)
||||||||++|||||+++|+||||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+..||+|
T Consensus 142 ----------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v 211 (221)
T TIGR02211 142 ----------LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRV 211 (221)
T ss_pred ----------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEE
Confidence 99999999999999999999999999999999999999999998875 379999999999999999999
Q ss_pred EEEeCCEEE
Q 004826 683 IVLENGKVI 691 (728)
Q Consensus 683 iVld~G~Iv 691 (728)
++|++|+++
T Consensus 212 ~~l~~G~i~ 220 (221)
T TIGR02211 212 LEMKDGQLF 220 (221)
T ss_pred EEEeCCEec
Confidence 999999986
No 148
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-45 Score=375.71 Aligned_cols=210 Identities=29% Similarity=0.461 Sum_probs=189.0
Q ss_pred EEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH----HHHhcce
Q 004826 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKSI 535 (728)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~----~~lR~~I 535 (728)
.+.|++|+|+++.++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++. ...|+.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 578999999877789999999999999999999999999999999999999999999999999877653 3467889
Q ss_pred EEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+|++|++.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|.++..... |
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------L 141 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGIN-------------------L 141 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCc-------------------C
Confidence 99999999999999999998764 456677888899999999999999999998887666 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHH--HHHHHc-CCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN--ALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~--~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
|||||||++||||++++|++|||||||++||+.+...+.+ .++.+. .++|+|++||+++.++.||+|++|++|.
T Consensus 142 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 142 SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 9999999999999999999999999999999999998887 344433 3689999999999999999999999884
No 149
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-45 Score=381.47 Aligned_cols=214 Identities=31% Similarity=0.526 Sum_probs=181.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC------CCCHHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC------EVTLESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~------~i~~~~l 531 (728)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. ..+...+
T Consensus 2 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYG-AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEEC-CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 378999999996 468999999999999999999999999999999999999999999999999873 2345678
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHHcCC---CCCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 532 RKSIGVVPQDTVLFND-TIFHNIRYGR---LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~g-TIreNI~~g~---~~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
|++|+||||++.+|.+ |++|||.++. ...+. +++.++++..++.+++...| ..
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~-------- 141 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFP-----------LH-------- 141 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hh--------
Confidence 8999999999999975 9999997531 11222 23444555555544443332 23
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCe
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~ 681 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+
T Consensus 142 -----------LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 142 -----------LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASR 210 (242)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 99999999999999999999999999999999999999999999875 47999999999999865 999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++|++|++++.|+++++.+.
T Consensus 211 i~~l~~g~i~~~~~~~~~~~~ 231 (242)
T PRK11124 211 VVYMENGHIVEQGDASCFTQP 231 (242)
T ss_pred EEEEECCEEEEeCCHHHhcCc
Confidence 999999999999999887643
No 150
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.2e-45 Score=375.86 Aligned_cols=202 Identities=37% Similarity=0.572 Sum_probs=175.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHHhcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~---~~lR~~I 535 (728)
|+++||+++|++.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..+|+.|
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 4789999999755689999999999999999999999999999999999999999999999999988764 3578899
Q ss_pred EEEcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+||+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+.....| ..
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------- 136 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALP-----------AE------------- 136 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-----------hh-------------
Confidence 99999999998 599999987631 122 234566666666665544333 13
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+.+ ||+|++|+
T Consensus 137 ------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~ 210 (214)
T cd03292 137 ------LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALE 210 (214)
T ss_pred ------cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999874 57999999999999875 89999999
Q ss_pred CCEE
Q 004826 687 NGKV 690 (728)
Q Consensus 687 ~G~I 690 (728)
+|++
T Consensus 211 ~G~~ 214 (214)
T cd03292 211 RGKL 214 (214)
T ss_pred CCcC
Confidence 9975
No 151
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-45 Score=375.74 Aligned_cols=209 Identities=26% Similarity=0.486 Sum_probs=181.4
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++||
T Consensus 1 i~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYG-DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEEC-CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEe
Confidence 57999999996 46899999999999999999999999999999999999999999999999998763 45778899999
Q ss_pred cCCCCCCcc-cHHHHHHcCCC--CC----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
||++.+|.. |++|||.++.. .. .++++.++++..++.++....| + .
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~----~---------------- 131 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLV-------K----T---------------- 131 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCh-------h----h----------------
Confidence 999998875 99999987421 11 2345667777777766544332 1 2
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 132 ---LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G 208 (220)
T cd03265 132 ---YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208 (220)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999988753 7899999999998865 9999999999
Q ss_pred EEEEEcChHHH
Q 004826 689 KVIEQGSHDDL 699 (728)
Q Consensus 689 ~Ive~Gth~eL 699 (728)
+|++.|+++++
T Consensus 209 ~i~~~~~~~~~ 219 (220)
T cd03265 209 RIIAEGTPEEL 219 (220)
T ss_pred EEEEeCChHHc
Confidence 99999998775
No 152
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=386.94 Aligned_cols=217 Identities=34% Similarity=0.531 Sum_probs=188.5
Q ss_pred eEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
.|+++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|++|+
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 59999999999753 46999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEcCCCC--CCcccHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDTV--LFNDTIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~~--LF~gTIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
||+|++. ++..|+++|+.++... .+ ++++.++++..++.++... ....
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~------------- 142 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-----------EPNA------------- 142 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhC-----------Cccc-------------
Confidence 9999984 5567899999886321 22 2345566666666544332 1223
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~IiVld 686 (728)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|+
T Consensus 143 ------LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~ 216 (269)
T PRK13648 143 ------LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMN 216 (269)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEE
Confidence 999999999999999999999999999999999999999999998753 789999999999998899999999
Q ss_pred CCEEEEEcChHHHhhccc
Q 004826 687 NGKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~g 704 (728)
+|+|++.|+++++.....
T Consensus 217 ~G~i~~~g~~~~~~~~~~ 234 (269)
T PRK13648 217 KGTVYKEGTPTEIFDHAE 234 (269)
T ss_pred CCEEEEecCHHHHhcCHH
Confidence 999999999999976543
No 153
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.4e-45 Score=375.38 Aligned_cols=203 Identities=32% Similarity=0.538 Sum_probs=175.6
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.. ++.++||
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEE
Confidence 579999999964 5899999999999999999999999999999999999999999999999999876543 5789999
Q ss_pred cCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+++...| ..
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~---------------- 130 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKP-----------KQ---------------- 130 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCCh-----------hh----------------
Confidence 99999985 699999987621 122 234556666666665544433 23
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 131 ---LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g 207 (213)
T cd03301 131 ---LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDG 207 (213)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 99999999999999999999999999999999999999999998875 37999999999998765 9999999999
Q ss_pred EEEEEc
Q 004826 689 KVIEQG 694 (728)
Q Consensus 689 ~Ive~G 694 (728)
++++.|
T Consensus 208 ~~~~~g 213 (213)
T cd03301 208 QIQQIG 213 (213)
T ss_pred EEEecC
Confidence 999876
No 154
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-45 Score=380.23 Aligned_cols=213 Identities=31% Similarity=0.524 Sum_probs=181.5
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC--CHHHHhcceE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV--TLESLRKSIG 536 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i--~~~~lR~~Ia 536 (728)
|+++|++++|+ ++++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.+. +...+|+.++
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFG-PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEEC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 78999999996 46799999999999999999999999999999999999999999999999999874 3467888999
Q ss_pred EEcCCCCCCc-ccHHHHHHcCCC---CCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~---~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
|++|++.+|. .|++||+.++.. ..+.+ ++.++++..++.+... .....
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~------------- 136 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAH-----------HYPSE------------- 136 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHh-----------cChhh-------------
Confidence 9999999886 699999987631 12222 2334444444433322 22233
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|+
T Consensus 137 ------LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 210 (240)
T PRK09493 137 ------LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFID 210 (240)
T ss_pred ------cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999998875 47999999999999864 99999999
Q ss_pred CCEEEEEcChHHHhhc
Q 004826 687 NGKVIEQGSHDDLLTK 702 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~ 702 (728)
+|++++.|+++++++.
T Consensus 211 ~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 211 KGRIAEDGDPQVLIKN 226 (240)
T ss_pred CCEEEeeCCHHHHhcC
Confidence 9999999999998754
No 155
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-45 Score=378.03 Aligned_cols=203 Identities=31% Similarity=0.461 Sum_probs=176.3
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
|+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 5789999999742 689999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCCCCCc-ccHHHHHHcCCC--CC----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLFN-DTIFHNIRYGRL--SA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF~-gTIreNI~~g~~--~~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+||||++.+|. .|++|||.++.. .. .++++.++++..++.++..+.| ..
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------- 131 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYP-----------HQ------------- 131 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------cc-------------
Confidence 99999999997 699999987531 11 2345666777777766555443 23
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCeEEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVL 685 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~IiVl 685 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|
T Consensus 132 ------LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 205 (220)
T cd03293 132 ------LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVL 205 (220)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999998874 3799999999999765 59999999
Q ss_pred e--CCEEEEEcCh
Q 004826 686 E--NGKVIEQGSH 696 (728)
Q Consensus 686 d--~G~Ive~Gth 696 (728)
+ +|+|++.++-
T Consensus 206 ~~~~G~i~~~~~~ 218 (220)
T cd03293 206 SARPGRIVAEVEV 218 (220)
T ss_pred ECCCCEEEEEEEe
Confidence 9 7999998874
No 156
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-45 Score=380.07 Aligned_cols=212 Identities=31% Similarity=0.516 Sum_probs=178.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia~ 537 (728)
|+++||++.|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+... ++++++|
T Consensus 1 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYG-QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeC-CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 57999999996 468999999999999999999999999999999999999999999999999999887655 4678999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCCC--CHHH-HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLSA--TEEE-VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~--sdee-i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
+||++.+|.. |++||+.++.... .+++ ..++++..+ +++.........
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~----------~l~~~~~~~~~~------------------ 131 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFP----------VLKEMLGRRGGD------------------ 131 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHH----------hHHHHhhCChhh------------------
Confidence 9999999986 9999998864221 1111 122222221 122222223333
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCCEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKV 690 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G~I 690 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 132 -LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 132 -LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRV 210 (230)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999988764 7999999999999885 999999999999
Q ss_pred EEEcChHHHh
Q 004826 691 IEQGSHDDLL 700 (728)
Q Consensus 691 ve~Gth~eLl 700 (728)
++.|+++++.
T Consensus 211 ~~~~~~~~~~ 220 (230)
T TIGR03410 211 VASGAGDELD 220 (230)
T ss_pred EEECCHHHcC
Confidence 9999999883
No 157
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=392.40 Aligned_cols=215 Identities=30% Similarity=0.458 Sum_probs=181.9
Q ss_pred eEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--------
Q 004826 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-------- 525 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~-------- 525 (728)
.|+++||+|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999743 269999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CCHHHHhcceEEEcCCC--CCCcccHHHHHHcCCC--CCCHH----HHHHHHHHhccH-HHHHh
Q 004826 526 ----------------VTLESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEE----EVYDAARRAAIH-DTIMN 580 (728)
Q Consensus 526 ----------------i~~~~lR~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sde----ei~~A~~~a~l~-~~I~~ 580 (728)
.+...+|+.||||||+| .+|..|++|||.|+.. ..+.+ ++.++++..++. ++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~- 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ- 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh-
Confidence 23567899999999986 7899999999998742 23333 345555555553 2222
Q ss_pred CCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH
Q 004826 581 FPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL 660 (728)
Q Consensus 581 LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l 660 (728)
..-.. ||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++
T Consensus 161 ----------~~~~~-------------------LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l 211 (305)
T PRK13651 161 ----------RSPFE-------------------LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL 211 (305)
T ss_pred ----------CChhh-------------------CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 12222 9999999999999999999999999999999999999999999887
Q ss_pred c-CCCeEEEeccCchHH-hhcCeEEEEeCCEEEEEcChHHHhhc
Q 004826 661 A-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 661 ~-~~~TvIvIaHRLsti-~~aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
. .++|+|+|||+++.+ +.||+|+||++|+|++.|+.+|+.+.
T Consensus 212 ~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 212 NKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 4 479999999999876 56999999999999999999998765
No 158
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=4.3e-45 Score=382.55 Aligned_cols=216 Identities=33% Similarity=0.516 Sum_probs=184.5
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----------
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV---------- 526 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i---------- 526 (728)
+.|+++||+|.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 4699999999996 46899999999999999999999999999999999999999999999999998642
Q ss_pred ---CHHHHhcceEEEcCCCCCCc-ccHHHHHHcCCC---CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccc
Q 004826 527 ---TLESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (728)
Q Consensus 527 ---~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~---~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~ 595 (728)
....+|+.++||||++.+|. .|++||+.++.. ... ++++.++++..++.+... ......
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~----------~~~~~~ 152 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQ----------GKYPVH 152 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhh----------hCCccc
Confidence 13577889999999999997 499999986421 122 234555556555544321 122223
Q ss_pred cchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCch
Q 004826 596 GRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT 674 (728)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLs 674 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++
T Consensus 153 -------------------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~ 213 (257)
T PRK10619 153 -------------------LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 213 (257)
T ss_pred -------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999999999999999999999999999999999999999998875 4799999999999
Q ss_pred HHhh-cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 675 TAMQ-CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 675 ti~~-aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
.+.. ||+|++|++|++++.|+++++.+.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhhhC
Confidence 9986 999999999999999999998754
No 159
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=6.1e-46 Score=395.92 Aligned_cols=213 Identities=31% Similarity=0.505 Sum_probs=192.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+-+|. +..+++|+||+|++||+++++|||||||||++++|+||.+|++|+|.+||.|+.+++++ ++.|++
T Consensus 5 ~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~ 81 (352)
T COG3842 5 ALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGM 81 (352)
T ss_pred eEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccce
Confidence 699999999997 67899999999999999999999999999999999999999999999999999998865 579999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCC---CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~---~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
|+|+--||. -||+|||.||-. ...+ +.+.++++.+++.++-.+.|.
T Consensus 82 VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-------------------------- 135 (352)
T COG3842 82 VFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-------------------------- 135 (352)
T ss_pred eecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh--------------------------
Confidence 999999995 699999999953 1222 368899999999887766553
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH-HhhcCeEEEEe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLE 686 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst-i~~aD~IiVld 686 (728)
.|||||+||+||||||..+|++|+||||.||||..--..++.-|+++. .|.|.|+|||.-.. +.-+|||.||+
T Consensus 136 ----qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~ 211 (352)
T COG3842 136 ----QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMN 211 (352)
T ss_pred ----hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEcc
Confidence 299999999999999999999999999999999999999998887654 47999999999765 66799999999
Q ss_pred CCEEEEEcChHHHhhcc
Q 004826 687 NGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~ 703 (728)
+|+|.+.||++|+..+.
T Consensus 212 ~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 212 DGRIEQVGTPEEIYERP 228 (352)
T ss_pred CCceeecCCHHHHhhCc
Confidence 99999999999998764
No 160
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-45 Score=384.83 Aligned_cols=218 Identities=29% Similarity=0.475 Sum_probs=186.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCCC-HHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVT-LESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~i~-~~~l 531 (728)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.+++ ...+
T Consensus 21 ~l~i~nl~~~~~-~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (276)
T PRK14271 21 AMAAVNLTLGFA-GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEF 99 (276)
T ss_pred EEEEeeEEEEEC-CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHH
Confidence 589999999996 56899999999999999999999999999999999999986 6999999999998764 4578
Q ss_pred hcceEEEcCCCCCCcccHHHHHHcCCC---CCCHHHHHH----HHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL---SATEEEVYD----AARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~gTIreNI~~g~~---~~sdeei~~----A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|+.|+||||++.+|+.|++|||.++.. ..+++++.+ +++..++. +.+++.+......
T Consensus 100 ~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~~~~~--------- 163 (276)
T PRK14271 100 RRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-------DAVKDRLSDSPFR--------- 163 (276)
T ss_pred hhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC-------chhhhHhhCCccc---------
Confidence 899999999999999999999987631 134444432 23333332 2223334444444
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|+
T Consensus 164 ----------LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~ 233 (276)
T PRK14271 164 ----------LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAA 233 (276)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999988777999999999998765 99999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
+|++|+|++.|+++++.+.
T Consensus 234 ~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 234 LFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred EEECCEEEEeCCHHHHHhC
Confidence 9999999999999999865
No 161
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=3.6e-45 Score=400.37 Aligned_cols=213 Identities=31% Similarity=0.547 Sum_probs=190.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.|+|
T Consensus 14 ~L~l~~l~~~~~-~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 90 (375)
T PRK09452 14 LVELRGISKSFD-GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNT 90 (375)
T ss_pred eEEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 599999999996 46799999999999999999999999999999999999999999999999999887754 578999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+.|. .
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----------~--------------- 144 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPH-----------Q--------------- 144 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChh-----------h---------------
Confidence 9999999955 99999998742 122 3456778888888887777662 2
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~ 687 (728)
||||||||+||||||+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||++..+. .||+|+||++
T Consensus 145 ----LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~ 220 (375)
T PRK09452 145 ----LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRD 220 (375)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999998764 799999999999864 5999999999
Q ss_pred CEEEEEcChHHHhhcc
Q 004826 688 GKVIEQGSHDDLLTKA 703 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~ 703 (728)
|+|++.|+++++.++.
T Consensus 221 G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 221 GRIEQDGTPREIYEEP 236 (375)
T ss_pred CEEEEEcCHHHHHhCc
Confidence 9999999999998753
No 162
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3e-45 Score=380.17 Aligned_cols=212 Identities=23% Similarity=0.413 Sum_probs=181.7
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH-hcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~Ia~ 537 (728)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.++|
T Consensus 3 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 3 LYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 789999999964 679999999999999999999999999999999999999999999999999988876654 567999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCCC--------------CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLSA--------------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~--------------sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
++|++.+|.+ |++||+.++.... .++++.++++..++ +.........
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~------- 143 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL-----------ADEADRLAGL------- 143 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCC-----------chhhcCChhh-------
Confidence 9999999986 9999998863210 11223333333333 2222233333
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCe
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~ 681 (728)
||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+++|+|++||+++.+.. ||+
T Consensus 144 ------------LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~ 211 (242)
T TIGR03411 144 ------------LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADK 211 (242)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999998778999999999999875 999
Q ss_pred EEEEeCCEEEEEcChHHHhh
Q 004826 682 IIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~ 701 (728)
|++|++|++++.|+++++..
T Consensus 212 i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 212 VTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred EEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999864
No 163
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-45 Score=401.43 Aligned_cols=212 Identities=30% Similarity=0.472 Sum_probs=186.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+|
T Consensus 3 ~l~i~~l~~~~~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYG-DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGVGM 79 (369)
T ss_pred EEEEEEEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCEEE
Confidence 489999999996 4679999999999999999999999999999999999999999999999999987765 3578999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.+|. .|++|||.|+.. ..+ ++++.++++..++.++..+.| ..
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----------~~--------------- 133 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKP-----------KA--------------- 133 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCCh-----------hh---------------
Confidence 999999996 499999998732 122 234667777777766554443 12
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~ 687 (728)
||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++
T Consensus 134 ----LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~ 209 (369)
T PRK11000 134 ----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 209 (369)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999988753 799999999999775 5999999999
Q ss_pred CEEEEEcChHHHhhc
Q 004826 688 GKVIEQGSHDDLLTK 702 (728)
Q Consensus 688 G~Ive~Gth~eLl~~ 702 (728)
|+|++.|+++|+...
T Consensus 210 G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 210 GRVAQVGKPLELYHY 224 (369)
T ss_pred CEEEEEcCHHHHHhC
Confidence 999999999999764
No 164
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=2.8e-45 Score=399.76 Aligned_cols=213 Identities=29% Similarity=0.507 Sum_probs=189.0
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCC--CEEEECCEeCCCCCHHHHhcc
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS--GSIRIDGQDICEVTLESLRKS 534 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~--G~I~idG~di~~i~~~~lR~~ 534 (728)
+.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++.+.+. .++.
T Consensus 4 ~~l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYG-ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRG 80 (362)
T ss_pred eEEEEEEEEEEEC-CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCC
Confidence 5799999999996 4579999999999999999999999999999999999999999 999999999987765 4678
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
|+||+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+.|. .
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----------~------------ 137 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPA-----------Q------------ 137 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChh-----------h------------
Confidence 9999999999965 99999998632 122 2346677777788777666552 2
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC---CCeEEEeccCchHHh-hcCeEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN---NRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~---~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||+||||||+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|+
T Consensus 138 -------LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~ 210 (362)
T TIGR03258 138 -------LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAG 210 (362)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999988754 689999999999865 599999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
||++|+|++.|+++|+.+.
T Consensus 211 vl~~G~i~~~g~~~~~~~~ 229 (362)
T TIGR03258 211 IMKDGRLAAHGEPQALYDA 229 (362)
T ss_pred EEECCEEEEEcCHHHHHhC
Confidence 9999999999999999875
No 165
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.4e-45 Score=384.91 Aligned_cols=223 Identities=27% Similarity=0.450 Sum_probs=186.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---HHhcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLRKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~---~lR~~ 534 (728)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.. .+|+.
T Consensus 7 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~ 85 (269)
T PRK11831 7 LVDMRGVSFTRG-NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKR 85 (269)
T ss_pred eEEEeCeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhc
Confidence 589999999996 56899999999999999999999999999999999999999999999999999877654 35788
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCCC---CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~~---~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|+||||++.+|.+ |++|||.++.. ..+. +++.++++..++.+.... .+ ..
T Consensus 86 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~----~~----------- 143 (269)
T PRK11831 86 MSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKL-------MP----SE----------- 143 (269)
T ss_pred EEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhC-------Ch----hh-----------
Confidence 9999999999986 99999987421 1222 233444454444332222 11 12
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|+
T Consensus 144 --------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~ 215 (269)
T PRK11831 144 --------LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAY 215 (269)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEE
Confidence 999999999999999999999999999999999999999999998753 7999999999998765 99999
Q ss_pred EEeCCEEEEEcChHHHhhcc-chHHHHHH
Q 004826 684 VLENGKVIEQGSHDDLLTKA-GRYAQLWG 711 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~-g~Y~~l~~ 711 (728)
+|++|++++.|+++++.+.. ..++.++.
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK11831 216 IVADKKIVAHGSAQALQANPDPRVRQFLD 244 (269)
T ss_pred EEECCEEEEeCCHHHHhcCCcHHHHHHHH
Confidence 99999999999999998643 34555554
No 166
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=3.2e-45 Score=395.58 Aligned_cols=224 Identities=28% Similarity=0.446 Sum_probs=186.4
Q ss_pred eEEEEEEEEEecC------------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC
Q 004826 458 SIQFDNVHFSYLT------------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (728)
Q Consensus 458 ~I~f~nVsF~Y~~------------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (728)
-|+++|++++|+. ..++++||||+|++||++||||+||||||||+++|+|+++|++|+|++||.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 4899999999963 2479999999999999999999999999999999999999999999999999999
Q ss_pred CCHHH---HhcceEEEcCCC--CCC-cccHHHHHHcCC----CCCCHHHH----HHHHHHhccH-HHHHhCCCcccchhh
Q 004826 526 VTLES---LRKSIGVVPQDT--VLF-NDTIFHNIRYGR----LSATEEEV----YDAARRAAIH-DTIMNFPAKYSTVVG 590 (728)
Q Consensus 526 i~~~~---lR~~Ia~V~Qd~--~LF-~gTIreNI~~g~----~~~sdeei----~~A~~~a~l~-~~I~~LP~G~dT~vg 590 (728)
++..+ +|++|+||+|+| .|| ..||.|||.++- +..+.++. .++++.+++. +...+
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~---------- 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINR---------- 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcC----------
Confidence 87654 678999999998 477 579999997531 22344433 3444444442 11111
Q ss_pred ccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEE
Q 004826 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIF 668 (728)
Q Consensus 591 E~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIv 668 (728)
.... ||||||||++|||||+.+|++||+|||||+||..+.+.|.+.|+++.+ +.|+|+
T Consensus 158 -~p~~-------------------LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~ 217 (331)
T PRK15079 158 -YPHE-------------------FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIF 217 (331)
T ss_pred -Cccc-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEE
Confidence 1122 999999999999999999999999999999999999999999988754 799999
Q ss_pred eccCchHHhh-cCeEEEEeCCEEEEEcChHHHhhc-cchHHH-HHH
Q 004826 669 IAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK-AGRYAQ-LWG 711 (728)
Q Consensus 669 IaHRLsti~~-aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~-l~~ 711 (728)
|||+++.+.. ||+|+||++|+|||.|+.+++++. ...|.+ ++.
T Consensus 218 iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~~l~~ 263 (331)
T PRK15079 218 IAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMS 263 (331)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHHHHHh
Confidence 9999999975 999999999999999999999865 334644 444
No 167
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=9e-45 Score=378.45 Aligned_cols=217 Identities=33% Similarity=0.527 Sum_probs=179.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC--------HHH
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--------LES 530 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~--------~~~ 530 (728)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++...+ ...
T Consensus 4 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFH-GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 89999999996 457999999999999999999999999999999999999999999999999987542 356
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHHcCC---CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~-gTIreNI~~g~---~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
+|+.++||||++.+|. .|++||+.++. .....++..+. +++.++.+ |++.........
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~----------- 144 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRR----------- 144 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhh-----------
Confidence 7889999999999885 69999998742 11222222111 12223322 222222223333
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cCeEEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++
T Consensus 145 --------LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~ 216 (250)
T PRK11264 145 --------LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIF 216 (250)
T ss_pred --------CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 999999999999999999999999999999999999999999988754 7999999999999865 999999
Q ss_pred EeCCEEEEEcChHHHhhc
Q 004826 685 LENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 685 ld~G~Ive~Gth~eLl~~ 702 (728)
|++|++++.|+++++.+.
T Consensus 217 l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 217 MDQGRIVEQGPAKALFAD 234 (250)
T ss_pred EECCEEEEeCCHHHHhcC
Confidence 999999999999998754
No 168
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-45 Score=380.43 Aligned_cols=218 Identities=32% Similarity=0.538 Sum_probs=186.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~~--i~~~~ 530 (728)
.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYH-KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEEC-CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 589999999996 467999999999999999999999999999999999999997 6999999999875 34567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--CC-C----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~-s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.++||||++.+|..|++|||.++.. .. . ++.+.++++..++.+++. .........
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~-------- 147 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVK-------DNLHKSGLA-------- 147 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhh-------hHhhCCccc--------
Confidence 8999999999999999999999988632 11 1 223444555556554433 223344444
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|
T Consensus 148 -----------LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i 216 (251)
T PRK14249 148 -----------LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWT 216 (251)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEE
Confidence 9999999999999999999999999999999999999999999988778999999999999876 7999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+.+++...
T Consensus 217 ~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 217 GFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred EEEeCCeEEEeCCHHHHHhC
Confidence 99999999999999998654
No 169
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=380.98 Aligned_cols=219 Identities=28% Similarity=0.472 Sum_probs=187.1
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC--C---CCCEEEECCEeCCCC--CHH
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICEV--TLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~--p---~~G~I~idG~di~~i--~~~ 529 (728)
+.|+++||+|+|+ ++++|+|+||+|++||.+||+|+||||||||+++|+|+++ | ++|+|.+||.++... +..
T Consensus 3 ~~l~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFG-KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 5799999999996 4689999999999999999999999999999999999986 4 699999999998753 456
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHHcCCC--C-CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGRL--S-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~--~-~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
.+|+.|+||||++.+|. .|++|||.++.. . .+ ++++.++++..++.+++..+ .......
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~------ 148 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDR-------LKSNAME------ 148 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHH-------hhCCcCc------
Confidence 78999999999999998 599999987521 1 11 23456666677765544321 2223333
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcC
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCD 680 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD 680 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||
T Consensus 149 -------------LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 149 -------------LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSD 215 (252)
T ss_pred -------------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCC
Confidence 999999999999999999999999999999999999999999999888899999999999985 599
Q ss_pred eEEEEeCCEEEEEcChHHHhhc
Q 004826 681 EIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~eLl~~ 702 (728)
+|++|++|+|++.|+++++...
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKIFTT 237 (252)
T ss_pred EEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999998754
No 170
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-45 Score=383.14 Aligned_cols=219 Identities=32% Similarity=0.494 Sum_probs=187.2
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHH
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~ 529 (728)
..|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+..
T Consensus 12 ~~l~i~nl~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEEC-CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 3699999999996 4679999999999999999999999999999999999998 699999999999863 5677
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHHcCCCC--C---CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~--~---sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
.+|+.|+||||++.+|..|++|||.++... . .++++.++++.+++.+.+. +........
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~--------- 154 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECK-------DKLNESGYS--------- 154 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhh-------hhhCCCccc---------
Confidence 889999999999999999999999986421 1 1344566666666543322 222233333
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||++..+. .||+|+
T Consensus 155 ----------LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~ 224 (269)
T PRK14259 155 ----------LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTA 224 (269)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEE
Confidence 999999999999999999999999999999999999999999998877899999999999875 599999
Q ss_pred EEeC-----------CEEEEEcChHHHhhc
Q 004826 684 VLEN-----------GKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~-----------G~Ive~Gth~eLl~~ 702 (728)
+|++ |+++|.|+.+++...
T Consensus 225 ~l~~~~~~~~~~g~~g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 225 FFNAEEVEGGSGGKVGYLVEFNETKKIFNS 254 (269)
T ss_pred EEeccccccccccccceEEEeCCHHHHHhC
Confidence 9996 679999999999754
No 171
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-45 Score=380.75 Aligned_cols=218 Identities=32% Similarity=0.524 Sum_probs=187.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~i--~~~~ 530 (728)
-|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +...
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYG-EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeC-CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 489999999996 46899999999999999999999999999999999999984 899999999998753 3457
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--C-C----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~-~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.++||+|++.+|..|++||+.++.. . . .++++.++++..++++.+.. ........
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~-------- 146 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKS-------ELNKPGTR-------- 146 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHH-------HHhCChhh--------
Confidence 7899999999999999999999987521 1 1 23345666777776554422 23333434
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|
T Consensus 147 -----------LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i 215 (250)
T PRK14262 147 -----------LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYI 215 (250)
T ss_pred -----------cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999998877899999999999765 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++.+.
T Consensus 216 ~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14262 216 AFMYRGELIEYGPTREIVER 235 (250)
T ss_pred EEEECCEEEEecCHHHHHhC
Confidence 99999999999999999764
No 172
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.9e-45 Score=380.06 Aligned_cols=218 Identities=30% Similarity=0.486 Sum_probs=187.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~i--~~~~ 530 (728)
-|+++||+|+|+ ++++|+|+||+|+|||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+. +...
T Consensus 6 ~i~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYG-EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEEC-CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 489999999996 56899999999999999999999999999999999999763 489999999999876 4567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~--~-s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
.|+.|+||+|++.+|+.|++|||.++... . + ++.+.++++..++.+.+ .+.+.+....
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~-------- 149 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV-------KDRLHDSALS-------- 149 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhh-------HHHhhcChhh--------
Confidence 88999999999999999999999986321 1 1 23355555555554333 2334444544
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|
T Consensus 150 -----------LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v 218 (253)
T PRK14261 150 -----------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYT 218 (253)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEE
Confidence 999999999999999999999999999999999999999999999877899999999999986 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+.+++...
T Consensus 219 ~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14261 219 GFMYLGKLIEFDKTTQIFEN 238 (253)
T ss_pred EEEECCEEEEcCCHHHHHhC
Confidence 99999999999999998754
No 173
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2e-45 Score=373.52 Aligned_cols=200 Identities=39% Similarity=0.616 Sum_probs=173.5
Q ss_pred EEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 460 QFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 460 ~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
+++||+++|++. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 478999999742 6799999999999999999999999999999999999999999999999999988888899999999
Q ss_pred cCCC--CCCcccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 539 PQDT--VLFNDTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 539 ~Qd~--~LF~gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
||++ .+++.|++||+.++.. ..+ ++++.++++..++.+++.+.| ..
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~--------------- 134 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSP-----------FT--------------- 134 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCc-----------cc---------------
Confidence 9998 4678999999987532 122 234555666666655444332 23
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 135 ----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 135 ----LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999988754 7999999999999987 9999999998
Q ss_pred E
Q 004826 689 K 689 (728)
Q Consensus 689 ~ 689 (728)
+
T Consensus 211 ~ 211 (211)
T cd03225 211 K 211 (211)
T ss_pred C
Confidence 5
No 174
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-45 Score=385.38 Aligned_cols=214 Identities=23% Similarity=0.384 Sum_probs=182.5
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHHhcceE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSIG 536 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~i~~~~lR~~Ia 536 (728)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. +.+...+|+.|+
T Consensus 2 l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQ-DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 78999999996 467999999999999999999999999999999999999999999999999985 344567889999
Q ss_pred EEcCCCC--CCcccHHHHHHcCC--CCCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDTV--LFNDTIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~~--LF~gTIreNI~~g~--~~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
||||++. +|..|+.||+.++. ...+.+ ++.++++..++.++.. +. ...
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~------------- 136 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRH-------QP----IQC------------- 136 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhc-------CC----chh-------------
Confidence 9999985 67889999998752 122322 3445566666654432 21 222
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVld 686 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+. .||+|++|+
T Consensus 137 ------LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 137 ------LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999998875 4799999999999985 499999999
Q ss_pred CCEEEEEcChHHHhhcc
Q 004826 687 NGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~ 703 (728)
+|++++.|+++++....
T Consensus 211 ~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 211 QGQILTHGAPGEVFACT 227 (271)
T ss_pred CCEEEEeCCHHHHhcCh
Confidence 99999999999987653
No 175
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-45 Score=385.39 Aligned_cols=214 Identities=29% Similarity=0.493 Sum_probs=183.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--CCHHHHhcceE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIG 536 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~--i~~~~lR~~Ia 536 (728)
|+++||+|+|++.+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 7899999999755679999999999999999999999999999999999999999999999999853 33457889999
Q ss_pred EEcCCC--CCCcccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDT--VLFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~--~LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
||||++ .+|..|++|||.++.. ..+. +++.++++..++.++... .+ ..
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-------~~----~~------------- 137 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENK-------PP----HH------------- 137 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcC-------Ch----hh-------------
Confidence 999997 5788999999987632 1222 345556666666443222 21 12
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHh-hcCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM-QCDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~-~aD~IiVld 686 (728)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+. .||+|++|+
T Consensus 138 ------LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 138 ------LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999998754 799999999999987 599999999
Q ss_pred CCEEEEEcChHHHhhc
Q 004826 687 NGKVIEQGSHDDLLTK 702 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~ 702 (728)
+|++++.|+++++++.
T Consensus 212 ~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 212 DGKIIKEGTPKEVFSD 227 (275)
T ss_pred CCEEEEeCCHHHHhcC
Confidence 9999999999998764
No 176
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=384.30 Aligned_cols=218 Identities=29% Similarity=0.479 Sum_probs=185.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~~ 530 (728)
-|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++.. .+...
T Consensus 24 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 24 VFDTQNLNLWYG-EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred EEEEeeeEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 599999999996 4579999999999999999999999999999999999987 699999999999853 45677
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--CCCHH-----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEE-----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~sde-----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.++||||++.+|..|++|||.++.. ..+++ .+.++++..++.+ ++..........
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~-------- 167 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYG-------- 167 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCccc--------
Confidence 8999999999999999999999987531 22221 2233343333322 222333444444
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|
T Consensus 168 -----------LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i 236 (271)
T PRK14238 168 -----------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKT 236 (271)
T ss_pred -----------CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999998878999999999999765 9999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++.+.
T Consensus 237 ~~l~~G~i~~~g~~~~~~~~ 256 (271)
T PRK14238 237 AFFLNGYVNEYDDTDKIFSN 256 (271)
T ss_pred EEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999764
No 177
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-45 Score=379.75 Aligned_cols=218 Identities=30% Similarity=0.517 Sum_probs=187.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCC-CCCHHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC-EVTLESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~-~i~~~~l 531 (728)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++. ..+...+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYG-ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEEC-CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 489999999996 46899999999999999999999999999999999999996 5999999999986 4567788
Q ss_pred hcceEEEcCCCCCCcccHHHHHHcCCC--CCC-----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 532 RKSIGVVPQDTVLFNDTIFHNIRYGRL--SAT-----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~s-----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|+.++||+|++.+|..|++|||.++.. ... ++++.++++.+++++.+. +.+......
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~--------- 145 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFG--------- 145 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCccc---------
Confidence 999999999999999999999987632 111 233455666666654432 222333333
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|+
T Consensus 146 ----------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~ 215 (249)
T PRK14253 146 ----------LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTA 215 (249)
T ss_pred ----------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999998778999999999999776 99999
Q ss_pred EEeCCEEEEEcChHHHhhc
Q 004826 684 VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~ 702 (728)
+|++|+|++.|+.+++...
T Consensus 216 ~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 216 FFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred EEECCEEEEeCCHHHHHcC
Confidence 9999999999999988643
No 178
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.1e-45 Score=362.56 Aligned_cols=177 Identities=40% Similarity=0.684 Sum_probs=166.5
Q ss_pred EEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
|+++|++|+|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.++ ...+|+.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 5799999999753 4799999999999999999999999999999999999999999999999998777 6778999999
Q ss_pred EcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
|+|++.+|+.|++||| ... |||
T Consensus 80 ~~q~~~~~~~tv~~~i---------------------------------------~~~-------------------LS~ 101 (178)
T cd03247 80 LNQRPYLFDTTLRNNL---------------------------------------GRR-------------------FSG 101 (178)
T ss_pred EccCCeeecccHHHhh---------------------------------------ccc-------------------CCH
Confidence 9999999999999998 223 999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEc
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~G 694 (728)
|||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..+..||++++|++|++++.|
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999887789999999999999999999999999999865
No 179
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=5.7e-45 Score=373.31 Aligned_cols=203 Identities=33% Similarity=0.557 Sum_probs=175.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---Hhcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---lR~~I 535 (728)
|+++||+++|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+++... +|+.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 789999999964568999999999999999999999999999999999999999999999999998876543 78899
Q ss_pred EEEcCCCCC-CcccHHHHHHcCC--CCCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVL-FNDTIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~L-F~gTIreNI~~g~--~~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+||+|++.+ ++.|++|||.++. ...+++ ++.++++..++.+.+.+.| ..
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------- 137 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP-----------IQ------------- 137 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------hh-------------
Confidence 999999987 5679999998752 123333 3455666666655443322 23
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|+
T Consensus 138 ------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 138 ------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999998874 47999999999999876 89999999
Q ss_pred CCEEE
Q 004826 687 NGKVI 691 (728)
Q Consensus 687 ~G~Iv 691 (728)
+|+++
T Consensus 212 ~G~i~ 216 (222)
T PRK10908 212 DGHLH 216 (222)
T ss_pred CCEEc
Confidence 99986
No 180
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-45 Score=384.75 Aligned_cols=216 Identities=30% Similarity=0.517 Sum_probs=181.7
Q ss_pred eEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHH
Q 004826 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i----~~~ 529 (728)
.|+++||+|+|++. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 38899999999742 4799999999999999999999999999999999999999999999999998764 456
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHHcCCC--CCCHHHH----HHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sdeei----~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
.+|+.|+||||++ .+|+.|++|||.++.. ..+.++. .++++..++.+ .........
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~------ 145 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISE----------SLFEKNPFE------ 145 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCccc------
Confidence 7889999999998 6889999999987531 2333333 23333333321 111222333
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHh-hc
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM-QC 679 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~-~a 679 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .|
T Consensus 146 -------------LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~ 212 (280)
T PRK13649 146 -------------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYA 212 (280)
T ss_pred -------------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhC
Confidence 999999999999999999999999999999999999999999988753 799999999999885 59
Q ss_pred CeEEEEeCCEEEEEcChHHHhhc
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|+|++|++|++++.|+++++.+.
T Consensus 213 d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 213 DFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred CEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999998764
No 181
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-45 Score=387.18 Aligned_cols=221 Identities=31% Similarity=0.526 Sum_probs=180.9
Q ss_pred ceEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----C-C
Q 004826 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----V-T 527 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----i-~ 527 (728)
+.|+++||+++|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+ . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 579999999999743 259999999999999999999999999999999999999999999999999853 2 4
Q ss_pred HHHHhcceEEEcCCC--CCCcccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 528 LESLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 528 ~~~lR~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
...+|+.|+||+|++ .+|..|++|||.++.. ..+.++..+.++ .+.+.+ .||+++ .......
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~--~ll~~~-~L~~~~---~~~~~~~-------- 150 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVP--ELLKLV-QLPEDY---VKRSPFE-------- 150 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHH--HHHHHc-CCChhH---hcCChhh--------
Confidence 567889999999998 5788899999988632 223333322211 111111 233222 1222333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcC
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCD 680 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD 680 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||
T Consensus 151 -----------LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d 219 (289)
T PRK13645 151 -----------LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD 219 (289)
T ss_pred -----------CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 999999999999999999999999999999999999999999988753 799999999999875 599
Q ss_pred eEEEEeCCEEEEEcChHHHhhc
Q 004826 681 EIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~eLl~~ 702 (728)
+|++|++|++++.|+++++...
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~~~ 241 (289)
T PRK13645 220 EVIVMHEGKVISIGSPFEIFSN 241 (289)
T ss_pred EEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999888653
No 182
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-45 Score=377.17 Aligned_cols=211 Identities=34% Similarity=0.527 Sum_probs=187.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+|+|++ +++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEE
Confidence 579999999974 579999999999999999999999999999999999999999999999999987764 36789999
Q ss_pred cCCCCCCcc-cHHHHHHcCC------CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGR------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~------~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+|++.+|.+ |++||+.++. +...++++.++++..++.+++...| ..
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~---------------- 130 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQ---------------- 130 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hh----------------
Confidence 999999975 9999998752 1122456777788888877776655 23
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..++. ||+|++|++|
T Consensus 131 ---lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G 207 (232)
T cd03300 131 ---LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKG 207 (232)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999998764 7999999999999865 8999999999
Q ss_pred EEEEEcChHHHhhc
Q 004826 689 KVIEQGSHDDLLTK 702 (728)
Q Consensus 689 ~Ive~Gth~eLl~~ 702 (728)
++++.|+++++.+.
T Consensus 208 ~~~~~~~~~~~~~~ 221 (232)
T cd03300 208 KIQQIGTPEEIYEE 221 (232)
T ss_pred EEEecCCHHHHHhC
Confidence 99999999988754
No 183
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-45 Score=379.67 Aligned_cols=218 Identities=33% Similarity=0.515 Sum_probs=183.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~~--i~~~~ 530 (728)
-|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+ .+...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYG-DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEEC-CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 488999999996 568999999999999999999999999999999999999875 8999999999875 34567
Q ss_pred HhcceEEEcCCCCCCcc-cHHHHHHcCCC--CC-CHHHHHHH----HHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRL--SA-TEEEVYDA----ARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~g-TIreNI~~g~~--~~-sdeei~~A----~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
+|+.|+|++|++.+|.. |++||+.++.. .. .+++..+. ++..++.+. +++.+++.+ ..
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~~~----~~------- 148 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKTPA----TG------- 148 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcCCc----cc-------
Confidence 88999999999999985 99999987532 11 23333332 233333322 223333332 23
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCe
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~ 681 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+
T Consensus 149 ------------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~ 216 (252)
T PRK14272 149 ------------LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDT 216 (252)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCE
Confidence 9999999999999999999999999999999999999999999988778999999999999875 999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++|++|++++.|+++++++.
T Consensus 217 i~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14272 217 TSFFLVGDLVEHGPTDQLFTN 237 (252)
T ss_pred EEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999865
No 184
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=9.9e-45 Score=372.68 Aligned_cols=210 Identities=37% Similarity=0.514 Sum_probs=172.8
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH---HHHh
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL---ESLR 532 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~---~~lR 532 (728)
|+++||+|+|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 7899999999743 379999999999999999999999999999999999999999999999999988774 6788
Q ss_pred cceEEEcCCC--CCC-cccHHHHHHcCC----CCCCHHHHHHHHHHhccHHHHHhCCCccc-chhhccccccchhHHHhh
Q 004826 533 KSIGVVPQDT--VLF-NDTIFHNIRYGR----LSATEEEVYDAARRAAIHDTIMNFPAKYS-TVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 533 ~~Ia~V~Qd~--~LF-~gTIreNI~~g~----~~~sdeei~~A~~~a~l~~~I~~LP~G~d-T~vgE~G~~~~~~~~~~~ 604 (728)
+.++||+|++ .++ ..|++|||.++. +...+++..+++ ++.++.+ |++ .........
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~--------- 145 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHE--------- 145 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchh---------
Confidence 9999999999 344 579999997642 111122211111 1223332 221 222333334
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCe
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~ 681 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+
T Consensus 146 ----------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 215 (228)
T cd03257 146 ----------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADR 215 (228)
T ss_pred ----------cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 999999999999999999999999999999999999999999998764 799999999999987 5999
Q ss_pred EEEEeCCEEEEEc
Q 004826 682 IIVLENGKVIEQG 694 (728)
Q Consensus 682 IiVld~G~Ive~G 694 (728)
|++|++|++++.|
T Consensus 216 i~~l~~G~i~~~g 228 (228)
T cd03257 216 VAVMYAGKIVEEG 228 (228)
T ss_pred EEEEeCCEEEecC
Confidence 9999999999865
No 185
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=378.10 Aligned_cols=218 Identities=30% Similarity=0.481 Sum_probs=187.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCC--CHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEV--TLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~i--~~~~ 530 (728)
.|+++||+++|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++| ++|+|.+||.++.+. +...
T Consensus 4 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYG-EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEEC-CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 589999999996 46799999999999999999999999999999999999986 799999999998653 4457
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCC--C-C----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~--~-s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.++||||++.+|..|++||+.++... . + ++++.++++.+++.+.+.. ........
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~-------- 147 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALK-------- 147 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCccc--------
Confidence 78999999999999999999999876311 1 1 2345567777766544332 12223333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++||||++++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|
T Consensus 148 -----------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v 216 (251)
T PRK14270 148 -----------LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYT 216 (251)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEE
Confidence 9999999999999999999999999999999999999999999988778999999999998765 9999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++...
T Consensus 217 ~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 217 AFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred EEEECCeEEEeCCHHHHhcC
Confidence 99999999999999998754
No 186
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=383.80 Aligned_cols=219 Identities=32% Similarity=0.554 Sum_probs=187.5
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHH
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~ 529 (728)
..|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.+ .+..
T Consensus 38 ~~l~i~~l~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 38 TVIEARDLNVFYG-DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred ceEEEEEEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 3599999999996 4679999999999999999999999999999999999997 689999999999865 3566
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHHcCC-----CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGR-----LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~gTIreNI~~g~-----~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
.+|+.++||+|++.+|..|++|||.++. +...++++.++++..++.+.+.. .+.+....
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~--------- 180 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLD--------- 180 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCccc---------
Confidence 7899999999999999999999998752 11124456777777776544322 12333334
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+++
T Consensus 181 ----------LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~ 250 (285)
T PRK14254 181 ----------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTA 250 (285)
T ss_pred ----------CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEE
Confidence 9999999999999999999999999999999999999999999998777999999999999865 99975
Q ss_pred -EEeCCEEEEEcChHHHhhc
Q 004826 684 -VLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 -Vld~G~Ive~Gth~eLl~~ 702 (728)
+|++|+|++.|+++++.+.
T Consensus 251 v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 251 VFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred EEeeCCEEEEeCCHHHHHhC
Confidence 5799999999999998754
No 187
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.2e-45 Score=376.77 Aligned_cols=218 Identities=24% Similarity=0.490 Sum_probs=183.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia 536 (728)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++..++... +|+.|+
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYK-GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 388999999996 468999999999999999999999999999999999999999999999999998887644 578999
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCC---CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~---~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
||||++.+|.+ |++||+.++.. ..+.++. ...+++.++.+ |++.........
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~----------------- 137 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF--HIEHLRDSMGQS----------------- 137 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc--CCHHHhhcchhh-----------------
Confidence 99999999984 99999987631 1222221 11223445544 344433333434
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhcCeEEEEeCCEE
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKV 690 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~aD~IiVld~G~I 690 (728)
||||||||++||||++++|++|||||||++||+.+.+.+.+.++++. .++|+|++||++..+ +.||+|++|++|++
T Consensus 138 --LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 138 --LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHL 215 (241)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999988765 479999999999766 55999999999999
Q ss_pred EEEcChHHHhhc
Q 004826 691 IEQGSHDDLLTK 702 (728)
Q Consensus 691 ve~Gth~eLl~~ 702 (728)
++.|+++++++.
T Consensus 216 ~~~~~~~~~~~~ 227 (241)
T PRK10895 216 IAHGTPTEILQD 227 (241)
T ss_pred EeeCCHHHHhcC
Confidence 999999998753
No 188
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=7e-45 Score=374.08 Aligned_cols=206 Identities=34% Similarity=0.505 Sum_probs=179.4
Q ss_pred eEEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---H
Q 004826 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---l 531 (728)
-|+++||+++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 58999999999753 36999999999999999999999999999999999999999999999999999887654 2
Q ss_pred -hcceEEEcCCCCCCcc-cHHHHHHcCC--CCC----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 532 -RKSIGVVPQDTVLFND-TIFHNIRYGR--LSA----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 -R~~Ia~V~Qd~~LF~g-TIreNI~~g~--~~~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
++.++||+|++.+|.. |++|||.++. ... ..+++.++++..++.+++...|. .
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~-------- 146 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPA-----------Q-------- 146 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChh-----------h--------
Confidence 3689999999999875 9999998642 111 23456777777777666555442 3
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCe
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDE 681 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~ 681 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+
T Consensus 147 -----------LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~ 215 (228)
T PRK10584 147 -----------LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDR 215 (228)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCE
Confidence 999999999999999999999999999999999999999999988743 7899999999999999999
Q ss_pred EEEEeCCEEEEE
Q 004826 682 IIVLENGKVIEQ 693 (728)
Q Consensus 682 IiVld~G~Ive~ 693 (728)
|++|++|+|+|+
T Consensus 216 i~~l~~g~i~~~ 227 (228)
T PRK10584 216 RLRLVNGQLQEE 227 (228)
T ss_pred EEEEECCEEEec
Confidence 999999999875
No 189
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=380.81 Aligned_cols=218 Identities=30% Similarity=0.474 Sum_probs=188.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCC--CCCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDIC--EVTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~--~i~~~~ 530 (728)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||.++. +.+...
T Consensus 10 ~l~i~~v~~~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEEC-CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 499999999996 4589999999999999999999999999999999999986 48999999999985 345677
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCC--C---CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS--A---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~--~---sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
+|+.|+||+|++.+|+.|++|||.++... . .++++.++++.+++.+++.. ........
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~---------- 151 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLS---------- 151 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCccc----------
Confidence 89999999999999999999999886421 1 13445666777777665532 12333434
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeEEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIV 684 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~IiV 684 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++
T Consensus 152 ---------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~ 222 (264)
T PRK14243 152 ---------LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAF 222 (264)
T ss_pred ---------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999877899999999999865 5899999
Q ss_pred Ee---------CCEEEEEcChHHHhhc
Q 004826 685 LE---------NGKVIEQGSHDDLLTK 702 (728)
Q Consensus 685 ld---------~G~Ive~Gth~eLl~~ 702 (728)
|+ +|+|++.|+++|+.+.
T Consensus 223 l~~~~~~~~~~~g~i~~~~~~~~~~~~ 249 (264)
T PRK14243 223 FNVELTEGGGRYGYLVEFDRTEKIFNS 249 (264)
T ss_pred EecccccccccCceEEEeCCHHHHHhC
Confidence 98 8999999999999754
No 190
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3e-45 Score=372.89 Aligned_cols=198 Identities=33% Similarity=0.532 Sum_probs=170.6
Q ss_pred EEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEc
Q 004826 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (728)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~ 539 (728)
+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+||+
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 46899999964 67999999999999999999999999999999999999999999999998764 5788999999
Q ss_pred CCCCC---CcccHHHHHHcCCCC----------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 540 QDTVL---FNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 540 Qd~~L---F~gTIreNI~~g~~~----------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|++.+ |+.|++|||.++... ..++++.++++..++.++....| ..
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~----------- 132 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----------GE----------- 132 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----------cc-----------
Confidence 99987 668999999886421 12345667777777766554322 23
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++
T Consensus 133 --------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 133 --------LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 99999999999999999999999999999999999999999998875 67999999999999865 899999
Q ss_pred EeCCEEEEEc
Q 004826 685 LENGKVIEQG 694 (728)
Q Consensus 685 ld~G~Ive~G 694 (728)
|++| +++.|
T Consensus 205 l~~~-~~~~g 213 (213)
T cd03235 205 LNRT-VVASG 213 (213)
T ss_pred EcCc-EeecC
Confidence 9886 66655
No 191
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.1e-44 Score=374.83 Aligned_cols=211 Identities=36% Similarity=0.555 Sum_probs=181.9
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++|++|+|+ ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 i~i~~l~~~~~-~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFG-SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFV 77 (237)
T ss_pred CEEEEEEEEEC-CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEE
Confidence 57999999997 4579999999999999999999999999999999999999999999999999987653 47899999
Q ss_pred cCCCCCCcc-cHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
||++.+|.+ |++||+.++.+. .+ ++++.++++..++.++..+.| ..
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~---------------- 130 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYP-----------NQ---------------- 130 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCh-----------hh----------------
Confidence 999999975 999999876421 11 234455555555544433322 23
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
|||||+||++|||||+++|+++||||||++||+++++.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|
T Consensus 131 ---lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g 207 (237)
T TIGR00968 131 ---LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNG 207 (237)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 7999999999998755 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 004826 689 KVIEQGSHDDLLTK 702 (728)
Q Consensus 689 ~Ive~Gth~eLl~~ 702 (728)
++++.|+++++++.
T Consensus 208 ~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 208 KIEQIGSPDEVYDH 221 (237)
T ss_pred EEEEecCHHHHHcC
Confidence 99999999999753
No 192
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-45 Score=391.62 Aligned_cols=226 Identities=31% Similarity=0.490 Sum_probs=187.3
Q ss_pred eEEEEEEEEEecC---------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH
Q 004826 458 SIQFDNVHFSYLT---------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~ 528 (728)
-|+++|++++|+. ..++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.+||.|+.+++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 4899999999962 2479999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcceEEEcCCCC--CCc-ccHHHHHHcC---CCCCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccc
Q 004826 529 E---SLRKSIGVVPQDTV--LFN-DTIFHNIRYG---RLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (728)
Q Consensus 529 ~---~lR~~Ia~V~Qd~~--LF~-gTIreNI~~g---~~~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~ 595 (728)
. .+|++|+||+|+|. |+. -||.+|+... ....+ .+++.++++..++.+ ++++.... .
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~p~----~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRYPH----M 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCCCc----c
Confidence 3 57889999999994 554 4999998632 11122 234566666666642 12333222 2
Q ss_pred cchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCc
Q 004826 596 GRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRL 673 (728)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRL 673 (728)
||||||||++|||||+.+|++||+||||++||..+.+.|.+.|+++.+ +.|+|+|||++
T Consensus 155 -------------------LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl 215 (327)
T PRK11308 155 -------------------FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL 215 (327)
T ss_pred -------------------CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999999999999999999999999999999999999999999988754 79999999999
Q ss_pred hHHhh-cCeEEEEeCCEEEEEcChHHHhhcc-chHH-HHHHh
Q 004826 674 TTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA-GRYA-QLWGQ 712 (728)
Q Consensus 674 sti~~-aD~IiVld~G~Ive~Gth~eLl~~~-g~Y~-~l~~~ 712 (728)
+.+.. ||+|+||++|+|||.|+.+++++.. ..|. .|+..
T Consensus 216 ~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~~ 257 (327)
T PRK11308 216 SVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLSA 257 (327)
T ss_pred HHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHHHHHHh
Confidence 99975 9999999999999999999998752 3454 45443
No 193
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=5.3e-45 Score=374.34 Aligned_cols=210 Identities=30% Similarity=0.482 Sum_probs=181.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+++.++|
T Consensus 7 ~i~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAG-DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 599999999996 4679999999999999999999999999999999999999999999999999999988889999999
Q ss_pred EcCCCCCCcccHHHHHHcCC---CC-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 538 VPQDTVLFNDTIFHNIRYGR---LS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~---~~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
|+|++.+|+.|++||+.++. .. ..++++.++++..++.+ +........
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~------------------ 137 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPD----------TILTKNIAE------------------ 137 (225)
T ss_pred EecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCCh----------HHhcCCccc------------------
Confidence 99999999999999998642 11 12233444444444421 222333334
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeEEEEe-CCEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLE-NGKV 690 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~IiVld-~G~I 690 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.++.||+|++|+ ++..
T Consensus 138 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~ 216 (225)
T PRK10247 138 -LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGE 216 (225)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccch
Confidence 999999999999999999999999999999999999999999998753 789999999999999999999994 7777
Q ss_pred EEEcChH
Q 004826 691 IEQGSHD 697 (728)
Q Consensus 691 ve~Gth~ 697 (728)
+++|+|+
T Consensus 217 ~~~~~~~ 223 (225)
T PRK10247 217 MQEARYE 223 (225)
T ss_pred Hhhhhhc
Confidence 8999995
No 194
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-45 Score=380.75 Aligned_cols=218 Identities=31% Similarity=0.501 Sum_probs=188.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--i~~~~ 530 (728)
.|+++||+++|+ ++++|+|+||+|+|||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+...
T Consensus 7 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 7 AIKVKDLSFYYN-TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred eEEEEEEEEEEC-CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 699999999996 46799999999999999999999999999999999999985 48999999999864 45667
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC------CCC-HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL------SAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~------~~s-deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.|+||+|++.+|+.|++|||.++.. ... ++.+.++++.+++.+++..+ .......
T Consensus 86 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~-------- 150 (259)
T PRK14260 86 LRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDK-------LNKSALG-------- 150 (259)
T ss_pred hhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhH-------hcCCccc--------
Confidence 8899999999999999999999987521 111 23456777777776655432 1223333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++
T Consensus 151 -----------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i 219 (259)
T PRK14260 151 -----------LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFT 219 (259)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeE
Confidence 9999999999999999999999999999999999999999999998778999999999999865 9999
Q ss_pred EEEe-----CCEEEEEcChHHHhhc
Q 004826 683 IVLE-----NGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld-----~G~Ive~Gth~eLl~~ 702 (728)
++|+ +|++++.|+++|+.+.
T Consensus 220 ~~l~~~~~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 220 AFFSTDESRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred EEEeccCCCCceEEEeCCHHHHhcC
Confidence 9998 5999999999998754
No 195
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.1e-44 Score=379.31 Aligned_cols=220 Identities=31% Similarity=0.496 Sum_probs=188.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++|++|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAG-GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 78999999996 46899999999999999999999999999999999999999999999999999999988889999999
Q ss_pred cCCCC-CCcccHHHHHHcCCCC----------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 539 PQDTV-LFNDTIFHNIRYGRLS----------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~----------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
||++. .+..|++|||.++... ..++++.++++..++.+.... ....
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~------------ 137 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADR-----------DMST------------ 137 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcC-----------Cccc------------
Confidence 99985 4568999999886311 112345666666666543322 2223
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHh-hcCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM-QCDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~-~aD~IiVl 685 (728)
||||||||++||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|
T Consensus 138 -------LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l 210 (256)
T TIGR03873 138 -------LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVL 210 (256)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999998754 789999999999994 59999999
Q ss_pred eCCEEEEEcChHHHhhccchHHHHH
Q 004826 686 ENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
++|+|++.|+++|+.+. ....+.+
T Consensus 211 ~~G~i~~~g~~~~~~~~-~~~~~~~ 234 (256)
T TIGR03873 211 DGGRVVAAGPPREVLTP-ALIRAVY 234 (256)
T ss_pred eCCCEEEecCHHHhhCH-HHHHHHh
Confidence 99999999999998753 2344444
No 196
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=372.69 Aligned_cols=210 Identities=33% Similarity=0.552 Sum_probs=185.9
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|++ .+ .|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.++||
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEEEE
Confidence 789999999963 33 399999999999999999999999999999999999999999999999876543 5789999
Q ss_pred cCCCCCCcc-cHHHHHHcCC-CC-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~-~~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
||++.+|.+ |++|||.++. +. ..++++.++++..++.+.+.+.|. .
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~---------------- 129 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPG-----------Q---------------- 129 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcc-----------c----------------
Confidence 999999985 9999998752 21 124568888999998887777663 3
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|++|++|
T Consensus 130 ---LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g 206 (232)
T PRK10771 130 ---LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADG 206 (232)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999988753 7899999999998765 9999999999
Q ss_pred EEEEEcChHHHhhcc
Q 004826 689 KVIEQGSHDDLLTKA 703 (728)
Q Consensus 689 ~Ive~Gth~eLl~~~ 703 (728)
++++.|+++++....
T Consensus 207 ~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 207 RIAWDGPTDELLSGK 221 (232)
T ss_pred EEEEeCCHHHHHhCh
Confidence 999999999998654
No 197
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-45 Score=379.15 Aligned_cols=204 Identities=31% Similarity=0.479 Sum_probs=179.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++. .+++.++|
T Consensus 12 ~l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~ 85 (257)
T PRK11247 12 PLLLNAVSKRYG-ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRL 85 (257)
T ss_pred cEEEEEEEEEEC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEE
Confidence 599999999996 467999999999999999999999999999999999999999999999998763 56789999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
|+|++.+|. .|++||+.++.....++++.++++..++.+...+. ... ||
T Consensus 86 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~-------------------LS 135 (257)
T PRK11247 86 MFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEW-----------PAA-------------------LS 135 (257)
T ss_pred EecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCC-----------hhh-------------------CC
Confidence 999999997 69999999874323356677788887776554332 223 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCeEEEEeCCEEEEE
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQ 693 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~IiVld~G~Ive~ 693 (728)
||||||++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~ 215 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLD 215 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999998864 3799999999999875 5999999999999999
Q ss_pred cChH
Q 004826 694 GSHD 697 (728)
Q Consensus 694 Gth~ 697 (728)
|+.+
T Consensus 216 ~~~~ 219 (257)
T PRK11247 216 LTVD 219 (257)
T ss_pred cccc
Confidence 8864
No 198
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.8e-45 Score=368.94 Aligned_cols=201 Identities=32% Similarity=0.525 Sum_probs=177.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 i~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGE-QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCC-Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 579999999964 33 39999999999999999999999999999999999999999999999987764 36789999
Q ss_pred cCCCCCCcc-cHHHHHHcCCC-C-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRL-S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~-~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+|++.+|.+ |++||+.++.. . .+++++.++++..++.+.....|. .
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~---------------- 128 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPG-----------E---------------- 128 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcc-----------c----------------
Confidence 999999975 99999987632 1 134567888888888777666552 3
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++||||++++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 129 ---LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G 205 (211)
T cd03298 129 ---LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNG 205 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECC
Confidence 99999999999999999999999999999999999999999999875 37999999999998865 9999999999
Q ss_pred EEEEEc
Q 004826 689 KVIEQG 694 (728)
Q Consensus 689 ~Ive~G 694 (728)
++++.|
T Consensus 206 ~i~~~~ 211 (211)
T cd03298 206 RIAAQG 211 (211)
T ss_pred EEeecC
Confidence 999865
No 199
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-44 Score=377.85 Aligned_cols=214 Identities=32% Similarity=0.482 Sum_probs=187.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+++.++|
T Consensus 2 ~l~~~~l~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLG-GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeC-CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 378999999996 4679999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EcCCCCC-CcccHHHHHHcCCCCC------CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVL-FNDTIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~~------sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.+ +..|++||+.++.... .++++.++++..++.+...+. ...
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~--------------- 134 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRD-----------YPQ--------------- 134 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCC-----------ccc---------------
Confidence 9999987 6789999998864211 133466667777765544332 223
Q ss_pred CCCCCChhHHHHHHHHHHhc------cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCe
Q 004826 611 LFVSLSGGEKQRVALARAFL------KAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDE 681 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~ 681 (728)
||||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+
T Consensus 135 ----LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 210 (258)
T PRK13548 135 ----LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADR 210 (258)
T ss_pred ----CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCE
Confidence 9999999999999999 5999999999999999999999999999875 4799999999999886 5999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++|++|++++.|+++++.+.
T Consensus 211 i~~l~~G~i~~~~~~~~~~~~ 231 (258)
T PRK13548 211 IVLLHQGRLVADGTPAEVLTP 231 (258)
T ss_pred EEEEECCEEEeeCCHHHHhCh
Confidence 999999999999999998764
No 200
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-44 Score=385.39 Aligned_cols=215 Identities=33% Similarity=0.565 Sum_probs=181.2
Q ss_pred eEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHH
Q 004826 458 SIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i----~~~ 529 (728)
.|+++||+++|++. +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 47899999999732 4799999999999999999999999999999999999999999999999998753 356
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHHcCCC--CCCHHH----HHHHHHHhccH-HHHHhCCCcccchhhccccccchhH
Q 004826 530 SLRKSIGVVPQDT--VLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIH-DTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~--~LF~gTIreNI~~g~~--~~sdee----i~~A~~~a~l~-~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
..|+.|+||+|++ .+|..|++|||.++.. ..+.++ +.++++..++. ++. ......
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~~----- 145 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLI-----------SKSPFE----- 145 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHh-----------hCCccc-----
Confidence 7788999999998 5888999999987532 223332 34444444442 221 122223
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-h
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-Q 678 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~ 678 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .
T Consensus 146 --------------LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~ 211 (287)
T PRK13641 146 --------------LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEY 211 (287)
T ss_pred --------------CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999875 4799999999999875 5
Q ss_pred cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 679 CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
||+|++|++|++++.|+++++.+.
T Consensus 212 ~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 212 ADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred CCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999998754
No 201
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=378.03 Aligned_cols=220 Identities=21% Similarity=0.357 Sum_probs=182.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH-hcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~Ia 536 (728)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+ |..++
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFG-GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEEC-CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 489999999996 4689999999999999999999999999999999999999999999999999998876655 45699
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCCCC---------------CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRLSA---------------TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~---------------sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
||+|++.+|.+ |++|||.++.... .+++ .++ ...+.++++.+ |++.........
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~~--gl~~~~~~~~~~----- 153 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEA--LDRAATWLERV--GLLEHANRQAGN----- 153 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHH--HHHHHHHHHhC--ChhhhhhCChhh-----
Confidence 99999999986 9999999863110 0000 000 01123334443 444444444444
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ 678 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~ 678 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+..
T Consensus 154 --------------LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~ 219 (255)
T PRK11300 154 --------------LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG 219 (255)
T ss_pred --------------CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHH
Confidence 999999999999999999999999999999999999999999988753 7899999999999865
Q ss_pred -cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 679 -CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 679 -aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
||+|++|++|++++.|+++++...
T Consensus 220 ~~d~i~~l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 220 ISDRIYVVNQGTPLANGTPEEIRNN 244 (255)
T ss_pred hCCEEEEEECCeEEecCCHHHHhhC
Confidence 999999999999999999988653
No 202
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=398.36 Aligned_cols=209 Identities=37% Similarity=0.573 Sum_probs=180.9
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH----hcceEEEcCCCCCCc-c
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL----RKSIGVVPQDTVLFN-D 547 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l----R~~Ia~V~Qd~~LF~-g 547 (728)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+++...+ |++|+||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999999887654 468999999999996 5
Q ss_pred cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHH
Q 004826 548 TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQ 621 (728)
Q Consensus 548 TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQ 621 (728)
|++|||.++.. ..+ ++++.++++..++.++..+.|. . |||||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~-----------~-------------------LSgGq~Q 171 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPD-----------E-------------------LSGGMRQ 171 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcc-----------c-------------------CCHHHHH
Confidence 99999988631 112 3456777888888776665552 3 9999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCeEEEEeCCEEEEEcChHH
Q 004826 622 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDD 698 (728)
Q Consensus 622 RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~IiVld~G~Ive~Gth~e 698 (728)
|++|||||+.+|+|||||||||+||+.+.+.+++.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 172 Rv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~ 251 (400)
T PRK10070 172 RVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDE 251 (400)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999998874 4799999999999875 599999999999999999999
Q ss_pred Hhhcc--chHHHHHH
Q 004826 699 LLTKA--GRYAQLWG 711 (728)
Q Consensus 699 Ll~~~--g~Y~~l~~ 711 (728)
++... ...++++.
T Consensus 252 l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 252 ILNNPANDYVRTFFR 266 (400)
T ss_pred HHhCcccHHHHHHHh
Confidence 98653 23344544
No 203
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=380.12 Aligned_cols=219 Identities=33% Similarity=0.491 Sum_probs=189.4
Q ss_pred CceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCC----CC
Q 004826 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDIC----EV 526 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~----~i 526 (728)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.+||.++. ..
T Consensus 14 ~~~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEEC-CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 45799999999996 45899999999999999999999999999999999999975 7999999998874 34
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHHcCCC--C-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchh
Q 004826 527 TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--S-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSL 599 (728)
Q Consensus 527 ~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~ 599 (728)
+...+|+.|+|++|++.+|.+|++|||.++.. . ..++++.++++.+++.+.+. +.+......
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~---- 161 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVK-------DRLGDLAFN---- 161 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhh-------HHHhCCccc----
Confidence 45678999999999999999999999987621 1 12355677777776654332 233444444
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-h
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-Q 678 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~ 678 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .
T Consensus 162 ---------------LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~ 226 (265)
T PRK14252 162 ---------------LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARV 226 (265)
T ss_pred ---------------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999999999999999877899999999999986 5
Q ss_pred cCeEEEEeCCEEEEEcChHHHhh
Q 004826 679 CDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
||+|++|++|+|++.|+++++..
T Consensus 227 ~d~i~~l~~G~i~~~g~~~~~~~ 249 (265)
T PRK14252 227 SDYTAYMYMGELIEFGATDTIFI 249 (265)
T ss_pred CCEEEEEECCEEEEeCCHHHHHh
Confidence 99999999999999999999875
No 204
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=9.3e-45 Score=388.72 Aligned_cols=213 Identities=31% Similarity=0.496 Sum_probs=183.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|+.|||
T Consensus 7 ~i~i~~l~k~~~-~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~ 84 (306)
T PRK13537 7 PIDFRNVEKRYG-DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGV 84 (306)
T ss_pred eEEEEeEEEEEC-CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEE
Confidence 699999999996 467999999999999999999999999999999999999999999999999998755 457899999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCC--CCCHHHH----HHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~--~~sdeei----~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|||++.+|. .|++||+.+... ..+.++. .++++.. .|++..++.++ .
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~----~--------------- 138 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA-------KLENKADAKVG----E--------------- 138 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-------CCchHhcCchh----h---------------
Confidence 999999986 699999986321 2233332 2333333 34445566554 2
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||.++.+.. ||+|++|++|
T Consensus 139 ----LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G 214 (306)
T PRK13537 139 ----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEG 214 (306)
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999999875 47999999999999865 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 004826 689 KVIEQGSHDDLLTK 702 (728)
Q Consensus 689 ~Ive~Gth~eLl~~ 702 (728)
++++.|+++++.+.
T Consensus 215 ~i~~~g~~~~l~~~ 228 (306)
T PRK13537 215 RKIAEGAPHALIES 228 (306)
T ss_pred EEEEECCHHHHHhc
Confidence 99999999999765
No 205
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=379.10 Aligned_cols=218 Identities=28% Similarity=0.451 Sum_probs=184.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--i~~~~ 530 (728)
.|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.+||.++.. .+...
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 4899999999964 5799999999999999999999999999999999999974 69999999999853 45667
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHHcCCC---CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~---~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
+|+.|+||+|++.+|. .|++||+.++.. ..+ ++.+.++++..++.+++. .........
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~------- 148 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGG------- 148 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCccc-------
Confidence 8999999999999997 599999987521 111 234555666666644332 122223333
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCe
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDE 681 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~ 681 (728)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+
T Consensus 149 ------------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 149 ------------LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 999999999999999999999999999999999999999999998877899999999999875 5999
Q ss_pred EEEEe------CCEEEEEcChHHHhhc
Q 004826 682 IIVLE------NGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld------~G~Ive~Gth~eLl~~ 702 (728)
|++|+ +|+|++.|++++++..
T Consensus 217 i~~l~~~~~~~~g~i~~~~~~~~~~~~ 243 (258)
T PRK14241 217 TAFFNLEATGKPGRLVEIDDTEKIFSN 243 (258)
T ss_pred EEEEecccCCCCceEEecCCHHHHHhC
Confidence 99996 8999999999999753
No 206
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.8e-44 Score=379.92 Aligned_cols=226 Identities=24% Similarity=0.412 Sum_probs=190.2
Q ss_pred eEEEEEEEEEecC--------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH
Q 004826 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~--------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~ 529 (728)
-|+++||+++|+. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999962 24799999999999999999999999999999999999999999999999999876666
Q ss_pred HHhcceEEEcCCCC--CCc-ccHHHHHHcCC---CCC----CHHHHHHHHHHhccH-HHHHhCCCcccchhhccccccch
Q 004826 530 SLRKSIGVVPQDTV--LFN-DTIFHNIRYGR---LSA----TEEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKGRS 598 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~--LF~-gTIreNI~~g~---~~~----sdeei~~A~~~a~l~-~~I~~LP~G~dT~vgE~G~~~~~ 598 (728)
..++.|+||||++. ++. -|+.+|+.++. ... .++++.++++..++. +.... .+ ..
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~----~~--- 149 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASY-------YP----HM--- 149 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhc-------Cc----hh---
Confidence 67788999999985 444 38999986531 111 234566777777773 32221 11 22
Q ss_pred hHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH
Q 004826 599 LLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA 676 (728)
Q Consensus 599 ~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti 676 (728)
||||||||++|||||+.+|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+
T Consensus 150 ----------------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~ 213 (267)
T PRK15112 150 ----------------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMM 213 (267)
T ss_pred ----------------cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999999998753 78999999999999
Q ss_pred hh-cCeEEEEeCCEEEEEcChHHHhhc--cchHHHHHHhh
Q 004826 677 MQ-CDEIIVLENGKVIEQGSHDDLLTK--AGRYAQLWGQQ 713 (728)
Q Consensus 677 ~~-aD~IiVld~G~Ive~Gth~eLl~~--~g~Y~~l~~~q 713 (728)
.. ||+|++|++|+|++.|+++++.+. ...+++++..+
T Consensus 214 ~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 214 KHISDQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGH 253 (267)
T ss_pred HHhcCEEEEEECCEEEecCCHHHHhcCCCCHHHHHHHHhc
Confidence 86 999999999999999999999875 35577788754
No 207
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=377.13 Aligned_cols=218 Identities=33% Similarity=0.559 Sum_probs=188.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~~ 530 (728)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||+++.+ .+...
T Consensus 3 ~l~~~~v~~~~~-~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFD-DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 488999999996 4679999999999999999999999999999999999864 489999999999876 34667
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--CC-C----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~-s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.++||||++.+|+.|++|||.++.. .. + ++++.++++.+++.+++..+ +.+....
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~-------- 146 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALG-------- 146 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCccc--------
Confidence 8999999999999999999999987631 11 2 23456677777877665432 2233434
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||++..+.. ||+|
T Consensus 147 -----------LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i 215 (250)
T PRK14266 147 -----------LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYT 215 (250)
T ss_pred -----------CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEE
Confidence 9999999999999999999999999999999999999999999998778999999999998766 8999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++...
T Consensus 216 ~~l~~G~i~~~g~~~~~~~~ 235 (250)
T PRK14266 216 SFFLNGEIIESGLTDQIFIN 235 (250)
T ss_pred EEEECCeEEEeCCHHHHHhC
Confidence 99999999999999999754
No 208
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=379.62 Aligned_cols=222 Identities=27% Similarity=0.430 Sum_probs=191.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+++.|+|
T Consensus 7 ~l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 7 RLRGEQLTLGYG-KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred EEEEEEEEEEEC-CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 699999999997 4679999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EcCCCCCCc-ccHHHHHHcCC-CC---------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 538 VPQDTVLFN-DTIFHNIRYGR-LS---------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~-~~---------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|||++.+|. .|++||+.++. +. ..++++.++++..++.++..+. ...
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~----------- 143 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----------VDT----------- 143 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------ccc-----------
Confidence 999998875 69999998762 11 1234567777777776654332 223
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||++..+.. ||+|+
T Consensus 144 --------LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~ 215 (265)
T PRK10253 144 --------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLI 215 (265)
T ss_pred --------CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999998753 7899999999997754 99999
Q ss_pred EEeCCEEEEEcChHHHhhccchHHHHHH
Q 004826 684 VLENGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
+|++|+|++.|+++++... ....+++.
T Consensus 216 ~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 242 (265)
T PRK10253 216 ALREGKIVAQGAPKEIVTA-ELIERIYG 242 (265)
T ss_pred EEECCEEEEeCCHHHHhhH-HHHHHHhC
Confidence 9999999999999998753 23444443
No 209
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-44 Score=395.36 Aligned_cols=213 Identities=28% Similarity=0.454 Sum_probs=186.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.+++. .++.|+|
T Consensus 19 ~l~l~~v~~~~~-~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~ 95 (377)
T PRK11607 19 LLEIRNLTKSFD-GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINM 95 (377)
T ss_pred eEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 599999999996 4679999999999999999999999999999999999999999999999999987764 5789999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+.|. .
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~-----------~--------------- 149 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-----------Q--------------- 149 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChh-----------h---------------
Confidence 9999999965 99999998742 122 2345666677777655544432 2
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHH-hhcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTA-MQCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti-~~aD~IiVld~ 687 (728)
||||||||+||||||+++|++|+||||||+||+.+.+.+.+.|+++. .+.|+|+|||+++.+ ..||+|+||++
T Consensus 150 ----LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~ 225 (377)
T PRK11607 150 ----LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNR 225 (377)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999999999998887764 379999999999986 55999999999
Q ss_pred CEEEEEcChHHHhhcc
Q 004826 688 GKVIEQGSHDDLLTKA 703 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~ 703 (728)
|+|++.|+++|+..+.
T Consensus 226 G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 226 GKFVQIGEPEEIYEHP 241 (377)
T ss_pred CEEEEEcCHHHHHhCC
Confidence 9999999999998753
No 210
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.3e-45 Score=369.49 Aligned_cols=201 Identities=34% Similarity=0.586 Sum_probs=170.9
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--CCHHHHhcceE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIG 536 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~--i~~~~lR~~Ia 536 (728)
|+++||+|+|++ +++|+++||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+...+|+.|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 578999999964 689999999999999999999999999999999999999999999999999853 45567889999
Q ss_pred EEcCCCCCCc-ccHHHHHHcCCC---CCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 537 VVPQDTVLFN-DTIFHNIRYGRL---SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~---~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
||+|++.+|. .|++||+.++.. ..+.+ ++.++++..++.+.+.+.| ..
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------- 135 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYP-----------AQ------------- 135 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----------cc-------------
Confidence 9999999986 699999987631 22222 3344444444444333322 23
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||||||||++||||++++|++|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|+
T Consensus 136 ------LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~ 209 (213)
T cd03262 136 ------LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMD 209 (213)
T ss_pred ------cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999875 47999999999999865 99999999
Q ss_pred CCEE
Q 004826 687 NGKV 690 (728)
Q Consensus 687 ~G~I 690 (728)
+|+|
T Consensus 210 ~g~i 213 (213)
T cd03262 210 DGRI 213 (213)
T ss_pred CCcC
Confidence 9985
No 211
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-44 Score=376.82 Aligned_cols=218 Identities=28% Similarity=0.431 Sum_probs=190.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--i~~~~ 530 (728)
.+.++++++.|. +.++|+|+||+|+|||++||+|+||||||||+++|+|+++| ++|+|.+||.++.+ .....
T Consensus 8 ~~~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYG-NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 488999999995 46899999999999999999999999999999999999987 79999999999865 34457
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC-----CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~-----~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
+|+.|+||||++.+|..|++|||.++.. ...++++.++++.+++.+.+... .++....
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~-------~~~~~~~---------- 149 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDK-------LKVSGLS---------- 149 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhh-------hhCCccc----------
Confidence 8889999999999999999999988732 11235678888888876655432 2334444
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++
T Consensus 150 ---------LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 150 ---------LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAF 220 (261)
T ss_pred ---------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999998778999999999998754 999999
Q ss_pred Ee--------CCEEEEEcChHHHhhc
Q 004826 685 LE--------NGKVIEQGSHDDLLTK 702 (728)
Q Consensus 685 ld--------~G~Ive~Gth~eLl~~ 702 (728)
|+ +|++++.|+++++++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~~~ 246 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIFQN 246 (261)
T ss_pred EecccccccCCceEEEeCCHHHHHhC
Confidence 96 8999999999999864
No 212
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-44 Score=389.08 Aligned_cols=227 Identities=29% Similarity=0.426 Sum_probs=184.4
Q ss_pred eEEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC----CCCCEEEECCEeCCCCCHHH
Q 004826 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~----p~~G~I~idG~di~~i~~~~ 530 (728)
-|+++||+++|+.. .++|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37999999999743 469999999999999999999999999999999999998 48999999999999998776
Q ss_pred Hhc----ceEEEcCCCC--CCc-ccHHH----HHHcCC--C-CCCHHHHHHHHHHhccHHHHHhCCCcccchhhcccccc
Q 004826 531 LRK----SIGVVPQDTV--LFN-DTIFH----NIRYGR--L-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKG 596 (728)
Q Consensus 531 lR~----~Ia~V~Qd~~--LF~-gTIre----NI~~g~--~-~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~ 596 (728)
+++ .|+||||++. ++. -|+.+ |+.... + ...++++.++++..++.+.... +......
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~--------l~~~p~~- 153 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASR--------LDVYPHQ- 153 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH--------HhCCchh-
Confidence 654 7999999995 332 35554 444321 1 1123456777777777542211 1222323
Q ss_pred chhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCch
Q 004826 597 RSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLT 674 (728)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLs 674 (728)
||||||||++|||||+.+|++||+|||||+||+.+.+.|++.|+++.+ +.|+|+|||+++
T Consensus 154 ------------------LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~ 215 (326)
T PRK11022 154 ------------------LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA 215 (326)
T ss_pred ------------------CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 999999999999999999999999999999999999999999998754 799999999999
Q ss_pred HHh-hcCeEEEEeCCEEEEEcChHHHhhc-cchHH-HHHH
Q 004826 675 TAM-QCDEIIVLENGKVIEQGSHDDLLTK-AGRYA-QLWG 711 (728)
Q Consensus 675 ti~-~aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~-~l~~ 711 (728)
.+. .||+|+||++|+|+|.|+++++.+. ...|. .++.
T Consensus 216 ~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt~~ll~ 255 (326)
T PRK11022 216 LVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALLR 255 (326)
T ss_pred HHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHHHHHHH
Confidence 984 6999999999999999999999865 33454 4443
No 213
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.9e-44 Score=386.42 Aligned_cols=213 Identities=31% Similarity=0.477 Sum_probs=181.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+. ...+|+.|+|
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYG-DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeC-CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEE
Confidence 489999999996 46799999999999999999999999999999999999999999999999998764 3567899999
Q ss_pred EcCCCCCCc-ccHHHHHHcCC--CCCCHHHHH----HHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGR--LSATEEEVY----DAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~--~~~sdeei~----~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|||++.+|. .|++||+.+.. ...+.++.. ++++..+ |++.+++.++ .
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~-------l~~~~~~~~~----~--------------- 135 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFAR-------LESKADVRVA----L--------------- 135 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCC-------ChhHhcCchh----h---------------
Confidence 999999885 69999997532 123333332 2333333 3444455443 2
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|
T Consensus 136 ----LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G 211 (303)
T TIGR01288 136 ----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESG 211 (303)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999998874 47999999999999865 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 004826 689 KVIEQGSHDDLLTK 702 (728)
Q Consensus 689 ~Ive~Gth~eLl~~ 702 (728)
++++.|+++++.+.
T Consensus 212 ~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 212 RKIAEGRPHALIDE 225 (303)
T ss_pred EEEEEcCHHHHHhh
Confidence 99999999999754
No 214
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-44 Score=381.84 Aligned_cols=218 Identities=34% Similarity=0.490 Sum_probs=184.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCCC--CHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICEV--TLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~i--~~~~ 530 (728)
.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.+||.++... +...
T Consensus 39 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~ 117 (286)
T PRK14275 39 HVVAKNFSIYYG-EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117 (286)
T ss_pred EEEEeeeEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence 599999999996 4579999999999999999999999999999999999864 4999999999998653 3346
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCC--CC-C----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRL--SA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~-s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+|+.|+||+|++.+|..|++|||.++.. .. + ++++.++++..++.+.+. +.++ .....
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~---~~~~----~~~~~-------- 182 (286)
T PRK14275 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVS---DRLD----KNALG-------- 182 (286)
T ss_pred hhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchh---hHhh----CChhh--------
Confidence 7899999999999999999999988632 11 1 233555666666543322 1122 23333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+++|+|++||++..+.. ||+|
T Consensus 183 -----------LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i 251 (286)
T PRK14275 183 -----------LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYT 251 (286)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999988778999999999999865 9999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+++++.+.
T Consensus 252 ~~L~~G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 252 MFFYEGVLVEHAPTAQLFTN 271 (286)
T ss_pred EEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999764
No 215
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.8e-44 Score=379.91 Aligned_cols=239 Identities=29% Similarity=0.454 Sum_probs=193.9
Q ss_pred eEEEEEEEEEecC--------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-
Q 004826 458 SIQFDNVHFSYLT--------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL- 528 (728)
Q Consensus 458 ~I~f~nVsF~Y~~--------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~- 528 (728)
-|+++||+|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 3899999999974 4689999999999999999999999999999999999999999999999999988765
Q ss_pred --HHHhcceEEEcCCCC--CC-cccHHHHHHcCCC---CCCHHHHHHHHHHhccHHHHHhCCCcccc-hhhccccccchh
Q 004826 529 --ESLRKSIGVVPQDTV--LF-NDTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKGRSL 599 (728)
Q Consensus 529 --~~lR~~Ia~V~Qd~~--LF-~gTIreNI~~g~~---~~sdeei~~A~~~a~l~~~I~~LP~G~dT-~vgE~G~~~~~~ 599 (728)
..+|+.++||+|++. ++ ..|++||+.+... ..+. +.....+++.++.+ |+++ ........
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~~~~l~~~--gl~~~~~~~~~~~---- 151 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK-----AERLARASEMLRAV--DLDDSVLDKRPPQ---- 151 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCH-----HHHHHHHHHHHHHc--CCChhHhhCCCcc----
Confidence 357889999999983 43 4799999865321 1111 11122334455543 5553 33344444
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM 677 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~ 677 (728)
||||||||++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||++..+.
T Consensus 152 ---------------LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~ 216 (268)
T PRK10419 152 ---------------LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVE 216 (268)
T ss_pred ---------------CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHH
Confidence 999999999999999999999999999999999999999999988753 799999999999997
Q ss_pred h-cCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcchhhHHH
Q 004826 678 Q-CDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADAIDA 722 (728)
Q Consensus 678 ~-aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~~~~~~~ 722 (728)
. ||+|++|++|++++.|+++|+....+.|..-+..-...++.++.
T Consensus 217 ~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (268)
T PRK10419 217 RFCQRVMVMDNGQIVETQPVGDKLTFSSPAGRVLQNAVLPAFPVRR 262 (268)
T ss_pred HhCCEEEEEECCEEeeeCChhhccCCCCHHHHHHHHhccCCcchhc
Confidence 5 99999999999999999999987777665555444334444443
No 216
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2e-44 Score=374.09 Aligned_cols=213 Identities=23% Similarity=0.338 Sum_probs=176.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHH-hcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~~I 535 (728)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++..++.... +..+
T Consensus 1 l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVE-DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEEC-CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 57899999996 46899999999999999999999999999999999999 57999999999999998887665 4559
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCCCC---------CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGRLS---------AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~~~---------~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
+||+|++.+|.+ |++||+.+.... .+ ++++.++++..++.+.. .+..++ ..
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~---~~------ 144 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEF------LNRSVN---EG------ 144 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhh------cccccc---cC------
Confidence 999999999876 899999764210 11 12233444444432111 111111 12
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh--
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-- 678 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-- 678 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..
T Consensus 145 -------------LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~ 211 (243)
T TIGR01978 145 -------------FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIK 211 (243)
T ss_pred -------------cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhc
Confidence 99999999999999999999999999999999999999999999875 47999999999999976
Q ss_pred cCeEEEEeCCEEEEEcChHHHh
Q 004826 679 CDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gth~eLl 700 (728)
||+|++|++|++++.|++++..
T Consensus 212 ~d~i~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 212 PDYVHVLLDGRIVKSGDVELAK 233 (243)
T ss_pred CCeEEEEeCCEEEEecCHHHhc
Confidence 7999999999999999997654
No 217
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=366.99 Aligned_cols=201 Identities=24% Similarity=0.472 Sum_probs=170.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++|++++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. .+|+.++||
T Consensus 1 l~~~~l~~~~~-~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFG-RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 57899999996 4689999999999999999999999999999999999999999999999988753 567899999
Q ss_pred cCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+|++.+|.+ |++||+.++.. ..+ ++++.++++..++.+.+ .....+
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~---------------- 128 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYA-----------NKRVEE---------------- 128 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHH-----------hCcHhh----------------
Confidence 999999875 99999987531 111 23344444444444332 223333
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCE
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGK 689 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~ 689 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+
T Consensus 129 ---LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~ 205 (210)
T cd03269 129 ---LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGR 205 (210)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCE
Confidence 99999999999999999999999999999999999999999998864 47899999999998865 99999999999
Q ss_pred EEEEc
Q 004826 690 VIEQG 694 (728)
Q Consensus 690 Ive~G 694 (728)
+++.|
T Consensus 206 i~~~~ 210 (210)
T cd03269 206 AVLYG 210 (210)
T ss_pred EEecC
Confidence 99865
No 218
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-44 Score=375.47 Aligned_cols=218 Identities=33% Similarity=0.501 Sum_probs=184.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC--C---CCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--T---HSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~--p---~~G~I~idG~di~~--i~~~~ 530 (728)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.+||.++.+ .+...
T Consensus 5 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYG-KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEEC-CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 489999999997 4689999999999999999999999999999999999975 5 59999999999864 34567
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCC--CCC-C----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGR--LSA-T----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~--~~~-s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+++.++||+|++.+|..|++||+.++. ... . ++++.++++.+++.+.+. .........
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~-------- 148 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVK-------DHLHESALS-------- 148 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchh-------hHHhcCccc--------
Confidence 788999999999999999999998752 111 1 234555566666543332 122223333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|
T Consensus 149 -----------LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i 217 (252)
T PRK14255 149 -----------LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKT 217 (252)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999988777999999999999864 9999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|++++.|+.+++...
T Consensus 218 ~~l~~G~i~~~~~~~~~~~~ 237 (252)
T PRK14255 218 AFFLTGNLIEFADTKQMFLN 237 (252)
T ss_pred EEEECCEEEEeCCHHHHhcC
Confidence 99999999999999888754
No 219
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=376.81 Aligned_cols=226 Identities=27% Similarity=0.456 Sum_probs=189.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCC-----CHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEV-----TLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~i-----~~~ 529 (728)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 4 ~l~~~nl~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFN-QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeC-CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 489999999996 568999999999999999999999999999999999999986 49999999998654 345
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHHcCCCC--------------CCHHHHHHHHHHhccHHHHHhCCCcccchhhcccc
Q 004826 530 SLRKSIGVVPQDTVLFN-DTIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~~--------------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~ 594 (728)
.+|+.++||||++.+|. .|++||+.++... ..++++.++++..++.+.+.. ...
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~ 151 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQ-----------RVS 151 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhC-----------Ccc
Confidence 67889999999999887 5999999876321 112345666666666544332 222
Q ss_pred ccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccC
Q 004826 595 KGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHR 672 (728)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHR 672 (728)
. ||||||||++|||||+.+|++|||||||++||.++.+.+.+.|+++.+ ++|+|+|||+
T Consensus 152 ~-------------------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~ 212 (262)
T PRK09984 152 T-------------------LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212 (262)
T ss_pred c-------------------cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3 999999999999999999999999999999999999999999998753 7999999999
Q ss_pred chHH-hhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 673 LTTA-MQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 673 Lsti-~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
++.+ +.||+|++|++|++++.|+++++ ......++|......
T Consensus 213 ~~~~~~~~d~i~~l~~g~i~~~g~~~~~--~~~~~~~~~~~~~~~ 255 (262)
T PRK09984 213 VDYALRYCERIVALRQGHVFYDGSSQQF--DNERFDHLYRSINRV 255 (262)
T ss_pred HHHHHHhCCEEEEEECCEEEEeCCHHHh--ccHHHHHHHhhhhcc
Confidence 9975 56999999999999999999997 234566677655443
No 220
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=5.3e-44 Score=386.15 Aligned_cols=227 Identities=27% Similarity=0.439 Sum_probs=184.6
Q ss_pred eEEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCCHHHH
Q 004826 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~i~~~~l 531 (728)
-++++|++++|+. ..++|+||||+|++||++||||+||||||||+++|+|+++|+ +|+|.+||.|+.+++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 347999999999999999999999999999999999999996 9999999999999987776
Q ss_pred h----cceEEEcCCC--CCCc-ccHHHHHHcC---CCCCCHHHH----HHHHHHhccHHHHHhCCCcccchhhccccccc
Q 004826 532 R----KSIGVVPQDT--VLFN-DTIFHNIRYG---RLSATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKGR 597 (728)
Q Consensus 532 R----~~Ia~V~Qd~--~LF~-gTIreNI~~g---~~~~sdeei----~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~ 597 (728)
| +.|+||+|++ .++. -|+.+||... ....+.++. .++++.. .||++++. ++.....
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~~~-~~~~p~~-- 161 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEARKR-MKMYPHE-- 161 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChHHH-hcCCccc--
Confidence 4 4899999998 4544 4777776432 112333332 3333333 34444322 3444434
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchH
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTT 675 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLst 675 (728)
||||||||++|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.
T Consensus 162 -----------------LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~ 224 (330)
T PRK09473 162 -----------------FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGV 224 (330)
T ss_pred -----------------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 999999999999999999999999999999999999999999988754 7899999999999
Q ss_pred Hh-hcCeEEEEeCCEEEEEcChHHHhhc-cchHHH-HHH
Q 004826 676 AM-QCDEIIVLENGKVIEQGSHDDLLTK-AGRYAQ-LWG 711 (728)
Q Consensus 676 i~-~aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~-l~~ 711 (728)
+. .||+|+||++|+|||.|+++++.+. ...|.+ |+.
T Consensus 225 ~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 225 VAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred HHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHH
Confidence 86 5999999999999999999999874 344644 444
No 221
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=376.57 Aligned_cols=219 Identities=31% Similarity=0.508 Sum_probs=187.8
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-----CCEEEECCEeCCC--CCHH
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-----SGSIRIDGQDICE--VTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-----~G~I~idG~di~~--i~~~ 529 (728)
+.|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+.+ .+..
T Consensus 6 ~~l~~~nl~~~~~-~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYD-TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeC-CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 3699999999996 357999999999999999999999999999999999999985 8999999999853 4556
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHHcCC------CCCC-HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGR------LSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~gTIreNI~~g~------~~~s-deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
.+|+.++||+|++.+|..|++||+.++. +... ++.+.++++..++.+++.. ..++....
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~------- 150 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALD------- 150 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCccc-------
Confidence 7899999999999999999999998752 1111 2345667777777655543 22334444
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hc
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QC 679 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~a 679 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.+. .|
T Consensus 151 ------------LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~ 218 (261)
T PRK14258 151 ------------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218 (261)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhc
Confidence 99999999999999999999999999999999999999999998864 4899999999999886 58
Q ss_pred CeEEEEeC-----CEEEEEcChHHHhhc
Q 004826 680 DEIIVLEN-----GKVIEQGSHDDLLTK 702 (728)
Q Consensus 680 D~IiVld~-----G~Ive~Gth~eLl~~ 702 (728)
|+|++|++ |+|++.|+++|+...
T Consensus 219 d~i~~l~~~~~~~G~i~~~~~~~~~~~~ 246 (261)
T PRK14258 219 DFTAFFKGNENRIGQLVEFGLTKKIFNS 246 (261)
T ss_pred CEEEEEccCCCcCceEEEeCCHHHHHhC
Confidence 99999999 999999999999754
No 222
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=3e-44 Score=392.50 Aligned_cols=210 Identities=29% Similarity=0.427 Sum_probs=179.2
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCE----eCCCCCHHHHh----cceEEEcCCC
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ----DICEVTLESLR----KSIGVVPQDT 542 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~----di~~i~~~~lR----~~Ia~V~Qd~ 542 (728)
...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++.+.+...+| ++|+||+|++
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~ 115 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKF 115 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCC
Confidence 346899999999999999999999999999999999999999999999996 67777766553 5899999999
Q ss_pred CCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 543 VLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 543 ~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
.+|. .|++|||.|+.. ..+ ++++.++++..++.++....| .. |
T Consensus 116 ~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~-----------~~-------------------L 165 (382)
T TIGR03415 116 ALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKP-----------GE-------------------L 165 (382)
T ss_pred cCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hh-------------------C
Confidence 9997 799999998732 122 234567777777766544433 12 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeCCEEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIE 692 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~G~Ive 692 (728)
|||||||++|||||+.+|+|||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++
T Consensus 166 SgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~ 245 (382)
T TIGR03415 166 SGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQ 245 (382)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988754 79999999999986 5699999999999999
Q ss_pred EcChHHHhhc-cchHHHHH
Q 004826 693 QGSHDDLLTK-AGRYAQLW 710 (728)
Q Consensus 693 ~Gth~eLl~~-~g~Y~~l~ 710 (728)
.|+++|++.+ .+.|.+.+
T Consensus 246 ~g~~~ei~~~p~~~~~~~~ 264 (382)
T TIGR03415 246 HGTPEEIVLNPANDYVADF 264 (382)
T ss_pred ecCHHHHhhCcchHHHHHH
Confidence 9999999865 34454433
No 223
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-44 Score=370.29 Aligned_cols=210 Identities=34% Similarity=0.537 Sum_probs=184.7
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++|++++|++ ++|+|+||+|+|||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+. .++.++||
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 578999999964 38999999999999999999999999999999999999999999999999987665 36899999
Q ss_pred cCCCCCCc-ccHHHHHHcCCCC--C----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFN-DTIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~--~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+|++.+|. .|++||+.++... . .++++.++++..++.+++.+.| ..
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~---------------- 129 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKP-----------ET---------------- 129 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCc-----------cc----------------
Confidence 99999995 7999999876321 1 2345667777777776655543 23
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++||||++++|++|+|||||++||+.+.+.+.+.|+++.. ++|+|++||++..++. ||+|++|++|
T Consensus 130 ---LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G 206 (235)
T cd03299 130 ---LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNG 206 (235)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999998754 7999999999998875 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 004826 689 KVIEQGSHDDLLTK 702 (728)
Q Consensus 689 ~Ive~Gth~eLl~~ 702 (728)
++++.|+++++.+.
T Consensus 207 ~i~~~~~~~~~~~~ 220 (235)
T cd03299 207 KLIQVGKPEEVFKK 220 (235)
T ss_pred EEEEecCHHHHHhC
Confidence 99999999998765
No 224
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.5e-44 Score=364.41 Aligned_cols=202 Identities=35% Similarity=0.562 Sum_probs=178.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
++++||+++|+. .++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||+++.+.+ .+|+.++||
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 368999999963 578999999999999999999999999999999999999999999999998654 468899999
Q ss_pred cCCCCCCcc-cHHHHHHcCC-CC-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGR-LS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~-~~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+|++.+|.+ |++||+.++. +. ..++++.++++..++.+...+.|. .
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----------~---------------- 128 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPE-----------Q---------------- 128 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcc-----------c----------------
Confidence 999999975 9999998642 21 134567778888888777666653 3
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++||||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||++..+.. ||+|++|++|
T Consensus 129 ---LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g 205 (213)
T TIGR01277 129 ---LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQG 205 (213)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECC
Confidence 999999999999999999999999999999999999999999998753 7999999999998765 9999999999
Q ss_pred EEEEEcC
Q 004826 689 KVIEQGS 695 (728)
Q Consensus 689 ~Ive~Gt 695 (728)
++++.|.
T Consensus 206 ~i~~~~~ 212 (213)
T TIGR01277 206 KIKVVSD 212 (213)
T ss_pred eEEEecC
Confidence 9999875
No 225
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=375.16 Aligned_cols=226 Identities=27% Similarity=0.477 Sum_probs=189.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC------EeCCCCCHHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG------QDICEVTLESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG------~di~~i~~~~l 531 (728)
.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +++.+++...+
T Consensus 10 ~i~~~~~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~ 88 (257)
T PRK14246 10 VFNISRLYLYIN-DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKL 88 (257)
T ss_pred heeeeeEEEecC-CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHH
Confidence 599999999996 56899999999999999999999999999999999999999997666655 67777788889
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHHcCCC--CC-CHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 532 RKSIGVVPQDTVLFND-TIFHNIRYGRL--SA-TEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~g-TIreNI~~g~~--~~-sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
|+.++|++|++.+|.+ |++|||.++.. .. +++ .+.++++..++++++.. ...+....
T Consensus 89 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~-------- 153 (257)
T PRK14246 89 RKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYD-------RLNSPASQ-------- 153 (257)
T ss_pred hcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchh-------hhcCCccc--------
Confidence 9999999999999975 99999987632 11 222 24556666666543311 12233333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHH-hhcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA-MQCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti-~~aD~I 682 (728)
||||||||++||||++.+|++|||||||++||..+++.+.+.|.++.+++|+|++||+++.+ +.||++
T Consensus 154 -----------LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v 222 (257)
T PRK14246 154 -----------LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYV 222 (257)
T ss_pred -----------CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999887789999999999998 569999
Q ss_pred EEEeCCEEEEEcChHHHhhc-cchHHHHH
Q 004826 683 IVLENGKVIEQGSHDDLLTK-AGRYAQLW 710 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~-~g~Y~~l~ 710 (728)
++|++|++++.|+++|+.+. ...|.+.|
T Consensus 223 ~~l~~g~i~~~g~~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 223 AFLYNGELVEWGSSNEIFTSPKNELTEKY 251 (257)
T ss_pred EEEECCEEEEECCHHHHHhCCCcHHHHHH
Confidence 99999999999999999865 33454443
No 226
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=5.1e-44 Score=382.60 Aligned_cols=213 Identities=27% Similarity=0.483 Sum_probs=184.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.++++||+++|+ ++.+|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.++|.++.+ +...+|+.++|
T Consensus 2 ~l~~~~l~~~~~-~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~ 79 (301)
T TIGR03522 2 SIRVSSLTKLYG-TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGY 79 (301)
T ss_pred EEEEEEEEEEEC-CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEE
Confidence 389999999996 5679999999999999999999999999999999999999999999999999987 45678899999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
+||++.+|.+ |++||+.+... ..+ .+++.++++..++.+.. ......
T Consensus 80 ~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~--------------- 133 (301)
T TIGR03522 80 LPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQ-----------HKKIGQ--------------- 133 (301)
T ss_pred ecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHh-----------cCchhh---------------
Confidence 9999999976 99999976421 112 23344444444444332 222333
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCE
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGK 689 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~ 689 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+
T Consensus 134 ----LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 134 ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998888999999999998866 99999999999
Q ss_pred EEEEcChHHHhhc
Q 004826 690 VIEQGSHDDLLTK 702 (728)
Q Consensus 690 Ive~Gth~eLl~~ 702 (728)
+++.|+.+++.+.
T Consensus 210 i~~~g~~~~~~~~ 222 (301)
T TIGR03522 210 IVADKKLDELSAA 222 (301)
T ss_pred EEEeCCHHHHHHh
Confidence 9999999999764
No 227
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=382.01 Aligned_cols=218 Identities=34% Similarity=0.562 Sum_probs=186.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----CCCCEEEECCEeCCC--CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----THSGSIRIDGQDICE--VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----p~~G~I~idG~di~~--i~~~~ 530 (728)
.|+++||+++|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.+ .+...
T Consensus 45 ~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 45 KLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred eEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 5999999999964 679999999999999999999999999999999999986 689999999999875 34667
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCC-------------------CCHHHHHHHHHHhccHHHHHhCCCcccchhhc
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLS-------------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE 591 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~-------------------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE 591 (728)
+|+.|+||+|++.+|+.|++|||.++... ..++++.++++.+++.+ ++++.+..
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~ 196 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDRLDD 196 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHHhcC
Confidence 88999999999999999999999976310 11234555555555533 33344455
Q ss_pred cccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEecc
Q 004826 592 RGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671 (728)
Q Consensus 592 ~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH 671 (728)
.... ||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++.+++|+|+|||
T Consensus 197 ~~~~-------------------LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH 257 (305)
T PRK14264 197 NALG-------------------LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTH 257 (305)
T ss_pred cccc-------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEc
Confidence 5544 999999999999999999999999999999999999999999999887899999999
Q ss_pred CchHHhh-cCeE-EEEeCCEEEEEcChHHHhhc
Q 004826 672 RLTTAMQ-CDEI-IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 672 RLsti~~-aD~I-iVld~G~Ive~Gth~eLl~~ 702 (728)
+++.+.. ||+| ++|++|+|++.|+++++.+.
T Consensus 258 ~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 258 NMQQAARISDQTAVFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred CHHHHHHhcCEEEEEecCCEEEEeCCHHHHHhC
Confidence 9999765 9997 57899999999999998754
No 228
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.2e-43 Score=371.82 Aligned_cols=225 Identities=26% Similarity=0.390 Sum_probs=183.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEe-----CCCCCHHH--
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-----ICEVTLES-- 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d-----i~~i~~~~-- 530 (728)
-|+++||+++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 4899999999964 689999999999999999999999999999999999999999999999999 88777655
Q ss_pred --HhcceEEEcCCCC--CC-cccHHHHHHcCC---CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 531 --LRKSIGVVPQDTV--LF-NDTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 531 --lR~~Ia~V~Qd~~--LF-~gTIreNI~~g~---~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
+++.++||||++. ++ ..|+.|||.+.. ...+.+++.+ .++++++.++-+ ++.+......
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~-~~~~~~~~~~------- 151 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERVEID-AARIDDLPTT------- 151 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHcCCC-hhHHhCCCcc-------
Confidence 3668999999984 33 358899986521 0111222211 234556655432 1334455555
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hc
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QC 679 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~a 679 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .|
T Consensus 152 ------------LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~ 219 (258)
T PRK11701 152 ------------FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA 219 (258)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhc
Confidence 999999999999999999999999999999999999999999988654 789999999999997 59
Q ss_pred CeEEEEeCCEEEEEcChHHHhhcc-chHHH
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTKA-GRYAQ 708 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~~-g~Y~~ 708 (728)
|+|++|++|++++.|+++++.... ..|.+
T Consensus 220 d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~ 249 (258)
T PRK11701 220 HRLLVMKQGRVVESGLTDQVLDDPQHPYTQ 249 (258)
T ss_pred CEEEEEECCEEEEeCCHHHHhcCCCCHHHH
Confidence 999999999999999999997543 33543
No 229
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-44 Score=375.47 Aligned_cols=219 Identities=31% Similarity=0.466 Sum_probs=187.9
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCC--CCHH
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICE--VTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~--i~~~ 529 (728)
..|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.+ .+..
T Consensus 19 ~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 19 SVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred ceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 36999999999964 5799999999999999999999999999999999999864 69999999999864 3455
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHHcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
.+|+.|+||||++.+|+.|++|||.++... ..++++.++++.+++.+++.. ........
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~--------- 161 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTA--------- 161 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCccc---------
Confidence 788999999999999999999999886321 123445667777777655432 12223333
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|+
T Consensus 162 ----------LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~ 231 (274)
T PRK14265 162 ----------LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTA 231 (274)
T ss_pred ----------CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999877899999999999885 599999
Q ss_pred EEe---------CCEEEEEcChHHHhhc
Q 004826 684 VLE---------NGKVIEQGSHDDLLTK 702 (728)
Q Consensus 684 Vld---------~G~Ive~Gth~eLl~~ 702 (728)
+|+ +|++++.|+.+|+.+.
T Consensus 232 ~l~~~~~~~~~~~G~~~~~g~~~~~~~~ 259 (274)
T PRK14265 232 FFNTEIDEYGKRRGKLVEFSPTEQMFGS 259 (274)
T ss_pred EEecccccccccCceEEEeCCHHHHHhC
Confidence 997 8999999999998754
No 230
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.5e-44 Score=389.18 Aligned_cols=211 Identities=31% Similarity=0.493 Sum_probs=186.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHHHHhcc
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRKS 534 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i----~~~~lR~~ 534 (728)
|++ ||+++|++ +. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+. +....++.
T Consensus 2 l~~-~l~k~~~~-~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 567 99999964 32 3 89999999999999999999999999999999999999999999998753 24567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 535 IGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 535 Ia~V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
|+||+|++.+|. .|++|||.++.+...++++.++++..++.++..+.| ..
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~------------------ 128 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP-----------GS------------------ 128 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCc-----------cc------------------
Confidence 999999999996 599999999865455677888888888877665544 23
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCCEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKV 690 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G~I 690 (728)
||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 129 -LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i 207 (352)
T PRK11144 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKV 207 (352)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999988754 6899999999997755 999999999999
Q ss_pred EEEcChHHHhhcc
Q 004826 691 IEQGSHDDLLTKA 703 (728)
Q Consensus 691 ve~Gth~eLl~~~ 703 (728)
++.|+++++....
T Consensus 208 ~~~g~~~~i~~~p 220 (352)
T PRK11144 208 KAFGPLEEVWASS 220 (352)
T ss_pred EEecCHHHHHhCc
Confidence 9999999998753
No 231
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.1e-43 Score=371.40 Aligned_cols=226 Identities=24% Similarity=0.419 Sum_probs=186.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC----CCCEEEECCEeCCCCCHHHHhc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT----HSGSIRIDGQDICEVTLESLRK 533 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p----~~G~I~idG~di~~i~~~~lR~ 533 (728)
.|+++||+|+| ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +..++
T Consensus 4 ~l~~~~l~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA--AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe--ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 59999999999 46899999999999999999999999999999999999999 999999999998632 22346
Q ss_pred ceEEEcCCCC-CCc--ccHHHHHHcC----CCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 534 SIGVVPQDTV-LFN--DTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 534 ~Ia~V~Qd~~-LF~--gTIreNI~~g----~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
.|+||+|++. .|. .|+.+|+.+. .....++++.++++..++.++ ++.++.....
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~----------- 140 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFE----------- 140 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcc-----------
Confidence 8999999985 454 5888887542 122345667778887777542 1223334444
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|+
T Consensus 141 --------LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~ 212 (254)
T PRK10418 141 --------MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVA 212 (254)
T ss_pred --------cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999988753 799999999999986 599999
Q ss_pred EEeCCEEEEEcChHHHhhcc-c-hHHHHHHhhh
Q 004826 684 VLENGKVIEQGSHDDLLTKA-G-RYAQLWGQQN 714 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~-g-~Y~~l~~~q~ 714 (728)
+|++|++++.|+.+++.+.. . ..+.++..+.
T Consensus 213 ~l~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 213 VMSHGRIVEQGDVETLFNAPKHAVTRSLVSAHL 245 (254)
T ss_pred EEECCEEEEecCHHHHhhCCCCHHHHHHHHhhh
Confidence 99999999999999998653 2 3444665543
No 232
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-43 Score=373.96 Aligned_cols=213 Identities=30% Similarity=0.478 Sum_probs=184.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC--------CCEEEECCEeCCCCCHHH
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--------SGSIRIDGQDICEVTLES 530 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~--------~G~I~idG~di~~i~~~~ 530 (728)
|+++|++++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.++.+++...
T Consensus 2 l~~~nl~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARR-HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEEC-CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 78999999995 468999999999999999999999999999999999999998 999999999999888888
Q ss_pred HhcceEEEcCCCC-CCcccHHHHHHcCC-CC------CC---HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchh
Q 004826 531 LRKSIGVVPQDTV-LFNDTIFHNIRYGR-LS------AT---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSL 599 (728)
Q Consensus 531 lR~~Ia~V~Qd~~-LF~gTIreNI~~g~-~~------~s---deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~ 599 (728)
+++.++||||++. +|..|++|||.++. +. .+ ++.+.++++..++. +.++.....
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~---- 145 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-----------ALVGRDVTT---- 145 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-----------hhhcCCccc----
Confidence 9999999999986 67899999998863 11 11 12344555555543 333333444
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhc---------cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEE
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIF 668 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIv 668 (728)
||||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 146 ---------------LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii 210 (272)
T PRK13547 146 ---------------LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLA 210 (272)
T ss_pred ---------------CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 9999999999999999 59999999999999999999999999998754 799999
Q ss_pred eccCchHHh-hcCeEEEEeCCEEEEEcChHHHhhc
Q 004826 669 IAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 669 IaHRLsti~-~aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|||+++.+. .||+|++|++|+|++.|+++++++.
T Consensus 211 isH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (272)
T PRK13547 211 IVHDPNLAARHADRIAMLADGAIVAHGAPADVLTP 245 (272)
T ss_pred EECCHHHHHHhCCEEEEEECCeEEEecCHHHHcCH
Confidence 999999986 5999999999999999999998763
No 233
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-43 Score=384.12 Aligned_cols=225 Identities=28% Similarity=0.410 Sum_probs=187.1
Q ss_pred eEEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC----CCCCEEEECCEeCCCCCHHH
Q 004826 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~----p~~G~I~idG~di~~i~~~~ 530 (728)
-|+++||+++|+. ..++|+||||+|++||++||||+||||||||+++|+|+.+ |++|+|.+||+++.+++.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3899999999963 3479999999999999999999999999999999999986 58999999999999988776
Q ss_pred Hh----cceEEEcCCCCC--C-cccHHHHHHcCC------C----C--CCHHHHHHHHHHhccHHH---HHhCCCcccch
Q 004826 531 LR----KSIGVVPQDTVL--F-NDTIFHNIRYGR------L----S--ATEEEVYDAARRAAIHDT---IMNFPAKYSTV 588 (728)
Q Consensus 531 lR----~~Ia~V~Qd~~L--F-~gTIreNI~~g~------~----~--~sdeei~~A~~~a~l~~~---I~~LP~G~dT~ 588 (728)
++ +.|+||+|++.. + ..||.+||.... . . ..++++.++++..++.+. ..+.|
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p------ 156 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFP------ 156 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCc------
Confidence 53 479999999963 3 358999986421 0 0 013456777777777542 22222
Q ss_pred hhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeE
Q 004826 589 VGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTS 666 (728)
Q Consensus 589 vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~Tv 666 (728)
.. ||||||||++|||||+.+|+|||||||||+||+.+...|.+.|+++.+ +.|+
T Consensus 157 -----~~-------------------LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~ti 212 (330)
T PRK15093 157 -----YE-------------------LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTI 212 (330)
T ss_pred -----hh-------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 22 999999999999999999999999999999999999999999998764 7999
Q ss_pred EEeccCchHHhh-cCeEEEEeCCEEEEEcChHHHhhc-cchHHH-HHHh
Q 004826 667 IFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK-AGRYAQ-LWGQ 712 (728)
Q Consensus 667 IvIaHRLsti~~-aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~-l~~~ 712 (728)
|+|||+++.+.. ||+|+||++|+|+|.|+.+++.+. ...|.+ ++..
T Consensus 213 i~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~p~~~y~~~ll~~ 261 (330)
T PRK15093 213 LLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIRA 261 (330)
T ss_pred EEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999965 999999999999999999999865 345754 4443
No 234
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=9.3e-44 Score=385.28 Aligned_cols=217 Identities=30% Similarity=0.486 Sum_probs=183.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+.. ..+|+.|||
T Consensus 41 ~i~i~nl~k~y~-~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~ 118 (340)
T PRK13536 41 AIDLAGVSKSYG-DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGV 118 (340)
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEE
Confidence 599999999996 467999999999999999999999999999999999999999999999999998754 578899999
Q ss_pred EcCCCCCC-cccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 538 VPQDTVLF-NDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
|||++.+| ..|++||+.+... ..+.++..+.++. +.++ ..|++..++.+++
T Consensus 119 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~--ll~~-~~L~~~~~~~~~~----------------------- 172 (340)
T PRK13536 119 VPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPS--LLEF-ARLESKADARVSD----------------------- 172 (340)
T ss_pred EeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHH--HHHH-cCCchhhCCChhh-----------------------
Confidence 99999986 5699999986321 1233332222211 1111 2455556666542
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive 692 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|++
T Consensus 173 LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 173 LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998875 47999999999999865 99999999999999
Q ss_pred EcChHHHhhc
Q 004826 693 QGSHDDLLTK 702 (728)
Q Consensus 693 ~Gth~eLl~~ 702 (728)
.|+.+++.+.
T Consensus 253 ~g~~~~l~~~ 262 (340)
T PRK13536 253 EGRPHALIDE 262 (340)
T ss_pred EcCHHHHHhh
Confidence 9999999754
No 235
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=8.8e-44 Score=364.04 Aligned_cols=202 Identities=30% Similarity=0.476 Sum_probs=176.6
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---HHh
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SLR 532 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~---~lR 532 (728)
|+++||++.|++. +++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||+++.+++.. ..|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 7899999999742 6799999999999999999999999999999999999999999999999999887753 578
Q ss_pred cceEEEcCCCCCCc-ccHHHHHHcCCC---CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 533 KSIGVVPQDTVLFN-DTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF~-gTIreNI~~g~~---~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
+.|+||||++.+|. .|+.||+.++.. ..+. +++.++++..++.+++.+.| ..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~--------- 141 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP-----------HN--------- 141 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcCh-----------hh---------
Confidence 89999999999997 699999987642 2232 23556666666665555544 23
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~I 682 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++....||+|
T Consensus 142 ----------lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v 211 (220)
T TIGR02982 142 ----------LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRI 211 (220)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEE
Confidence 999999999999999999999999999999999999999999988763 79999999999988889999
Q ss_pred EEEeCCEE
Q 004826 683 IVLENGKV 690 (728)
Q Consensus 683 iVld~G~I 690 (728)
++|++|++
T Consensus 212 ~~l~~g~~ 219 (220)
T TIGR02982 212 VHMEDGKL 219 (220)
T ss_pred EEEECCEE
Confidence 99999986
No 236
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.5e-44 Score=367.72 Aligned_cols=213 Identities=31% Similarity=0.472 Sum_probs=170.5
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC---CCCCEEEECCEeCCCCCHHHHh
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESLR 532 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~---p~~G~I~idG~di~~i~~~~lR 532 (728)
++|+||+|.|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999864 689999999999999999999999999999999999999 99999999999875 35788
Q ss_pred cceEEEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 533 KSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+.|+||||++.+|.+ |++|||.++......+...++.+...++++ .++....+.+.++...
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~l~~~~~~~~~---------------- 142 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV--LLRDLALTRIGGNLVK---------------- 142 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHH--HHHhhcchhhhccccc----------------
Confidence 999999999999987 999999875321100000111111111110 1222222333333321
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCc--hHHhhcCeEEEEeCC
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRL--TTAMQCDEIIVLENG 688 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRL--sti~~aD~IiVld~G 688 (728)
.||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++ ...+.||+|++|++|
T Consensus 143 --~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 143 --GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred --CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 399999999999999999999999999999999999999999998864 478999999998 355679999999999
Q ss_pred EEEEEc
Q 004826 689 KVIEQG 694 (728)
Q Consensus 689 ~Ive~G 694 (728)
+++++|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 999876
No 237
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=7.1e-44 Score=351.23 Aligned_cols=171 Identities=44% Similarity=0.694 Sum_probs=162.6
Q ss_pred EEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 459 IQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
|+++|++++|++ ++++++|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 579999999974 3579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
|+|++.+|..|++||+ |||
T Consensus 81 ~~q~~~~~~~tv~~~l-------------------------------------------------------------LS~ 99 (173)
T cd03246 81 LPQDDELFSGSIAENI-------------------------------------------------------------LSG 99 (173)
T ss_pred ECCCCccccCcHHHHC-------------------------------------------------------------cCH
Confidence 9999999999999998 699
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEeCCEE
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKV 690 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G~I 690 (728)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.++.||+|++|++|++
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999999999999999999998875 47899999999999999999999999975
No 238
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=1.1e-43 Score=380.24 Aligned_cols=204 Identities=28% Similarity=0.503 Sum_probs=174.5
Q ss_pred EecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc
Q 004826 467 SYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (728)
Q Consensus 467 ~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~ 546 (728)
+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.|+||||++.+|.
T Consensus 2 ~y~-~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYG-DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeC-CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCC
Confidence 463 4679999999999999999999999999999999999999999999999999976 44677899999999999997
Q ss_pred c-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhH
Q 004826 547 D-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE 619 (728)
Q Consensus 547 g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQ 619 (728)
. |++|||.++.. ..+ ++++.++++..++.+.. ++.+ .. |||||
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~-------------------LSgG~ 129 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-------DRPV----GT-------------------YSGGM 129 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHh-------CCch----hh-------------------CCHHH
Confidence 6 99999987421 122 23355556666554332 2222 22 99999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEEEEcChH
Q 004826 620 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHD 697 (728)
Q Consensus 620 rQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~Gth~ 697 (728)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+|++.|+++
T Consensus 130 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~ 209 (302)
T TIGR01188 130 RRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPE 209 (302)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998875 47999999999999865 9999999999999999999
Q ss_pred HHhhc
Q 004826 698 DLLTK 702 (728)
Q Consensus 698 eLl~~ 702 (728)
++.++
T Consensus 210 ~l~~~ 214 (302)
T TIGR01188 210 ELKRR 214 (302)
T ss_pred HHHHh
Confidence 99765
No 239
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-43 Score=368.75 Aligned_cols=202 Identities=27% Similarity=0.434 Sum_probs=172.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++... +..++||
T Consensus 2 l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVV 75 (255)
T ss_pred EEEEEEEEEeC-CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEE
Confidence 78999999996 46899999999999999999999999999999999999999999999999998753 2469999
Q ss_pred cCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+|++.+|. .|++||+.++.. ..+ ++++.++++..++.+...+ ....
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~---------------- 128 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKR-----------YIWQ---------------- 128 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhC-----------Chhh----------------
Confidence 99999987 699999987521 122 2335555565555443322 2233
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEe--
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLE-- 686 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld-- 686 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|+
T Consensus 129 ---LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~ 205 (255)
T PRK11248 129 ---LSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPG 205 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999873 37999999999998755 99999998
Q ss_pred CCEEEEEcCh
Q 004826 687 NGKVIEQGSH 696 (728)
Q Consensus 687 ~G~Ive~Gth 696 (728)
+|+|++.++.
T Consensus 206 ~G~i~~~~~~ 215 (255)
T PRK11248 206 PGRVVERLPL 215 (255)
T ss_pred CcEEEEEecC
Confidence 5999999865
No 240
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.1e-43 Score=384.31 Aligned_cols=208 Identities=32% Similarity=0.502 Sum_probs=177.8
Q ss_pred EEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHHhcceEEE
Q 004826 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESLRKSIGVV 538 (728)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~----~~~lR~~Ia~V 538 (728)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ...+|+.|+||
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 89999964 34 4 999999999999999999999999999999999999999999999987543 34678899999
Q ss_pred cCCCCCCcc-cHHHHHHcCCCCCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
+|++.+|.. |++|||.++..... ++++.++++..++.+.....| ..
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~------------------ 131 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLP-----------GR------------------ 131 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCCh-----------hh------------------
Confidence 999999975 99999998743222 223555666666554443332 23
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCCEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKV 690 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G~I 690 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999998754 7999999999998865 999999999999
Q ss_pred EEEcChHHHhhcc
Q 004826 691 IEQGSHDDLLTKA 703 (728)
Q Consensus 691 ve~Gth~eLl~~~ 703 (728)
++.|+++++....
T Consensus 211 ~~~g~~~~~~~~~ 223 (354)
T TIGR02142 211 AAAGPIAEVWASP 223 (354)
T ss_pred EEECCHHHHhcCc
Confidence 9999999998653
No 241
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=5.7e-43 Score=358.73 Aligned_cols=205 Identities=23% Similarity=0.361 Sum_probs=178.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
++++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFG-KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEEC-CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 57899999996 468999999999999999999999999999999999999999999999999876422 3589999
Q ss_pred cCCCCCCc-ccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 539 PQDTVLFN-DTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
||++.+|. .|++||+.++.. ..+++++.++++..++.+....- ... |
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~-------------------L 125 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKK-----------AKQ-------------------F 125 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhh-----------Hhh-------------------C
Confidence 99999886 699999986431 23466777787777776643331 122 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEEeCCEEEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQ 693 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVld~G~Ive~ 693 (728)
|||||||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~ 205 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQ 205 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999998875 4789999999999885 5999999999999999
Q ss_pred cChHH
Q 004826 694 GSHDD 698 (728)
Q Consensus 694 Gth~e 698 (728)
|+.++
T Consensus 206 ~~~~~ 210 (223)
T TIGR03740 206 GKINK 210 (223)
T ss_pred cChhh
Confidence 98765
No 242
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-43 Score=368.64 Aligned_cols=210 Identities=30% Similarity=0.473 Sum_probs=176.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|++++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ...++.++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEE
Confidence 59999999999756789999999999999999999999999999999999999999999999998752 222346999
Q ss_pred EcCCCCC---CcccHHHHHHcCCC---------C-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 538 VPQDTVL---FNDTIFHNIRYGRL---------S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 538 V~Qd~~L---F~gTIreNI~~g~~---------~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|||++.+ +..+++||+.++.. . ..++.+.++++..++.++.. +.++ .
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-------~~~~----~--------- 142 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH-------RQIG----E--------- 142 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhc-------CCcc----c---------
Confidence 9999865 56689999875421 1 11334566777777765443 2222 2
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhcCeE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEI 682 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~aD~I 682 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||++
T Consensus 143 ----------LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v 212 (272)
T PRK15056 143 ----------LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT 212 (272)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999998875 479999999999887 459999
Q ss_pred EEEeCCEEEEEcChHHHhh
Q 004826 683 IVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~ 701 (728)
+++ +|++++.|+++++..
T Consensus 213 ~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 213 VMV-KGTVLASGPTETTFT 230 (272)
T ss_pred EEE-CCEEEeecCHHhccC
Confidence 776 899999999999864
No 243
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=8e-43 Score=363.28 Aligned_cols=219 Identities=24% Similarity=0.357 Sum_probs=171.7
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHHh-cce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESLR-KSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~i~~~~lR-~~I 535 (728)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....+ +.+
T Consensus 2 i~~~nl~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVE-DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeC-CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 78999999997 46799999999999999999999999999999999999 479999999999999988877665 579
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCCCCC---CHHHHHHHHH-HhccHHHHH--hCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGRLSA---TEEEVYDAAR-RAAIHDTIM--NFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~~~~---sdeei~~A~~-~a~l~~~I~--~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+||+|++.++.. |..+|+.+..... ..++..+..+ ...+.+.++ .+|+++.+.... ..
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--~~------------- 145 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN--VG------------- 145 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC--CC-------------
Confidence 999999987764 5444443211000 0000000000 001112222 344444433221 13
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh--cCeEEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ--CDEIIVL 685 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~--aD~IiVl 685 (728)
||||||||++||||++++|+||||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|
T Consensus 146 ------LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l 219 (248)
T PRK09580 146 ------FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 219 (248)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEE
Confidence 999999999999999999999999999999999999999999988754 6999999999999987 8999999
Q ss_pred eCCEEEEEcChHHH
Q 004826 686 ENGKVIEQGSHDDL 699 (728)
Q Consensus 686 d~G~Ive~Gth~eL 699 (728)
++|++++.|++++.
T Consensus 220 ~~g~i~~~g~~~~~ 233 (248)
T PRK09580 220 YQGRIVKSGDFTLV 233 (248)
T ss_pred ECCeEEEeCCHHHH
Confidence 99999999999855
No 244
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.4e-42 Score=368.82 Aligned_cols=214 Identities=34% Similarity=0.572 Sum_probs=189.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+..|..++.+|+||||+|++||.+|++||||||||||+|+|+|+..|++|+|.++|.|..+- ...+|++|||
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEE
Confidence 478999999997567899999999999999999999999999999999999999999999999998776 7889999999
Q ss_pred EcCCCCCCcc-cHHHHHHcCC-----C-CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGR-----L-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~-----~-~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|||++.++.. |++||+.|.. + ...++++.+.++..++.+.- +..++ .
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-------~~~~~----~--------------- 136 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-------NKKVR----T--------------- 136 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-------Ccchh----h---------------
Confidence 9999998865 9999997742 2 12356788888888876521 22222 2
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-C-CeEEEeccCchHHhh-cCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-N-RTSIFIAHRLTTAMQ-CDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~-~TvIvIaHRLsti~~-aD~IiVld~ 687 (728)
||+|||||++||+||+.+|++||||||||+||+.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++
T Consensus 137 ----lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~ 212 (293)
T COG1131 137 ----LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILND 212 (293)
T ss_pred ----cCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999998875 4 799999999999988 999999999
Q ss_pred CEEEEEcChHHHhhc
Q 004826 688 GKVIEQGSHDDLLTK 702 (728)
Q Consensus 688 G~Ive~Gth~eLl~~ 702 (728)
|+++..|+.+++...
T Consensus 213 G~~~~~g~~~~l~~~ 227 (293)
T COG1131 213 GKIIAEGTPEELKEK 227 (293)
T ss_pred CEEEEeCCHHHHHHh
Confidence 999999999998654
No 245
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.1e-43 Score=350.05 Aligned_cols=181 Identities=34% Similarity=0.535 Sum_probs=163.4
Q ss_pred eEEEEEEEEEecC-----CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC--CCCCCEEEECCEeCCCCCHHH
Q 004826 458 SIQFDNVHFSYLT-----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRIDGQDICEVTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~-----~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly--~p~~G~I~idG~di~~i~~~~ 530 (728)
.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 5899999999975 368999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 531 LRKSIGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
+|+.++|++|++.+|. .|++||+.++.. + + .
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~------~---------~-------------------~-------------- 111 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK------L---------R-------------------G-------------- 111 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH------h---------c-------------------c--------------
Confidence 7889999999999887 599999976421 0 0 4
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCch-HH-hhcCeEEEEe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT-TA-MQCDEIIVLE 686 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLs-ti-~~aD~IiVld 686 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++ .+ +.||+|++|+
T Consensus 112 -----LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~ 186 (194)
T cd03213 112 -----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLS 186 (194)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEe
Confidence 99999999999999999999999999999999999999999999875 4899999999997 44 4599999999
Q ss_pred CCEEEEEc
Q 004826 687 NGKVIEQG 694 (728)
Q Consensus 687 ~G~Ive~G 694 (728)
+|++++.|
T Consensus 187 ~G~i~~~~ 194 (194)
T cd03213 187 QGRVIYFG 194 (194)
T ss_pred CCEEEecC
Confidence 99998765
No 246
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=1.5e-42 Score=362.42 Aligned_cols=219 Identities=28% Similarity=0.415 Sum_probs=179.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEe-----CCCCCHHH--
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD-----ICEVTLES-- 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d-----i~~i~~~~-- 530 (728)
.|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.+ +.+++...
T Consensus 3 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYG-GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeC-CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 489999999996 4579999999999999999999999999999999999999999999999988 77776654
Q ss_pred --HhcceEEEcCCCC--C-CcccHHHHHHcCC--CC-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 531 --LRKSIGVVPQDTV--L-FNDTIFHNIRYGR--LS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 531 --lR~~Ia~V~Qd~~--L-F~gTIreNI~~g~--~~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
+++.|+|++|++. + +..|+.+|+.++. .. ....+. ...++++++.+.-+ ++........
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l~l~-~~~~~~~~~~------- 148 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEVEID-PTRIDDLPRA------- 148 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHcCCC-hhhhhcCchh-------
Confidence 3467999999985 2 3458899986421 00 011111 12334556665321 1334444444
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-c
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-C 679 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-a 679 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||++..+.. |
T Consensus 149 ------------LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~ 216 (253)
T TIGR02323 149 ------------FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLA 216 (253)
T ss_pred ------------cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 999999999999999999999999999999999999999999988643 7999999999999875 9
Q ss_pred CeEEEEeCCEEEEEcChHHHhhc
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++++|++|++++.|+++++...
T Consensus 217 d~~~~l~~G~i~~~~~~~~~~~~ 239 (253)
T TIGR02323 217 QRLLVMQQGRVVESGLTDQVLDD 239 (253)
T ss_pred CEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999998754
No 247
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-43 Score=358.64 Aligned_cols=213 Identities=33% Similarity=0.525 Sum_probs=182.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCE---eCCCCCHHHHhcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVTLESLRKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~---di~~i~~~~lR~~ 534 (728)
.|+++|++..|+ ..++++||||+|+.||.+|+.||||||||||+++|+||..|++|.|.+||. |.++. ..-.++
T Consensus 2 ~i~i~~~~~~~~-~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFG-AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDRK 78 (345)
T ss_pred ceeehhhhhhcc-cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhcc
Confidence 478889988885 457899999999999999999999999999999999999999999999999 66663 444568
Q ss_pred eEEEcCCCCCC-cccHHHHHHcCC------CC--CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 535 IGVVPQDTVLF-NDTIFHNIRYGR------LS--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 535 Ia~V~Qd~~LF-~gTIreNI~~g~------~~--~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
||+|+|+.-|| +.||+|||+||- |+ ..+.++.+-++.+++.++-+.-|.
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~---------------------- 136 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA---------------------- 136 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCch----------------------
Confidence 99999999998 579999999996 21 223455666777777665544442
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH-HhhcCeE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEI 682 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst-i~~aD~I 682 (728)
+||||||||+||||||...|++|+||||.+|||+.--+.+.+-|+++. -+.|+++|||+... .+.||||
T Consensus 137 --------QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrv 208 (345)
T COG1118 137 --------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRV 208 (345)
T ss_pred --------hcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceE
Confidence 399999999999999999999999999999999999999999988764 37999999999875 5669999
Q ss_pred EEEeCCEEEEEcChHHHhhcc
Q 004826 683 IVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~~ 703 (728)
+||++|+|.+.|+++|.....
T Consensus 209 vvl~~G~Ieqvg~p~ev~~~P 229 (345)
T COG1118 209 VVLNQGRIEQVGPPDEVYDHP 229 (345)
T ss_pred EEecCCeeeeeCCHHHHhcCC
Confidence 999999999999999997653
No 248
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.4e-43 Score=351.79 Aligned_cols=189 Identities=28% Similarity=0.403 Sum_probs=162.5
Q ss_pred eEEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC---CCCCEEEECCEeCCCCCHHHH
Q 004826 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~---p~~G~I~idG~di~~i~~~~l 531 (728)
.+.++||+|.|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.+.+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 4789999999983 5689999999999999999999999999999999999999 89999999999998775 467
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+.++||+|++.+|. .|++|||.++... . .+. .-..
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-~-----------------------~~~----~~~~--------------- 118 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC-K-----------------------GNE----FVRG--------------- 118 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh-c-----------------------ccc----chhh---------------
Confidence 889999999998887 5999999876310 0 111 1122
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEec-cCchHH-hhcCeEEEEe
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIA-HRLTTA-MQCDEIIVLE 686 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIa-HRLsti-~~aD~IiVld 686 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++.+ ++|+|+++ |++..+ +.||+|++|+
T Consensus 119 ----LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~ 194 (202)
T cd03233 119 ----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY 194 (202)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE
Confidence 999999999999999999999999999999999999999999998754 46767665 555554 6699999999
Q ss_pred CCEEEEEc
Q 004826 687 NGKVIEQG 694 (728)
Q Consensus 687 ~G~Ive~G 694 (728)
+|++++.|
T Consensus 195 ~G~i~~~g 202 (202)
T cd03233 195 EGRQIYYG 202 (202)
T ss_pred CCEEEecC
Confidence 99999865
No 249
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.6e-43 Score=350.16 Aligned_cols=180 Identities=29% Similarity=0.480 Sum_probs=162.4
Q ss_pred eEEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC--CCCCCEEEECCEeCCCCCHHHHh
Q 004826 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRIDGQDICEVTLESLR 532 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly--~p~~G~I~idG~di~~i~~~~lR 532 (728)
.|+++||+|+|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 5899999999974 268999999999999999999999999999999999986 489999999999886 5778
Q ss_pred cceEEEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 533 KSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+.++|++|++.+|.+ |++||+.++.. ++ .
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~---------------- 108 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------G---------------- 108 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------c----------------
Confidence 899999999988875 99999986420 00 4
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchH--HhhcCeEEEEeC-
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQCDEIIVLEN- 687 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLst--i~~aD~IiVld~- 687 (728)
||||||||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++. .+.||+|++|++
T Consensus 109 ---LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~ 185 (192)
T cd03232 109 ---LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185 (192)
T ss_pred ---CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCC
Confidence 99999999999999999999999999999999999999999999875 47999999999983 577999999999
Q ss_pred CEEEEEc
Q 004826 688 GKVIEQG 694 (728)
Q Consensus 688 G~Ive~G 694 (728)
|++++.|
T Consensus 186 g~i~~~g 192 (192)
T cd03232 186 GKTVYFG 192 (192)
T ss_pred CeEEeCC
Confidence 9999876
No 250
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-42 Score=354.47 Aligned_cols=201 Identities=31% Similarity=0.463 Sum_probs=167.9
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHHHHhcc
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRKS 534 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i----~~~~lR~~ 534 (728)
+++ ||+++|++ +.+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++.+. +...+|+.
T Consensus 2 ~~~-~l~~~~~~-~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 76 (214)
T cd03297 2 LCV-DIEKRLPD-FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRK 76 (214)
T ss_pred cee-eeeEecCC-eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhc
Confidence 355 89999975 344 99999999 99999999999999999999999999999999999998753 23457889
Q ss_pred eEEEcCCCCCCc-ccHHHHHHcCCCCCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 535 IGVVPQDTVLFN-DTIFHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 535 Ia~V~Qd~~LF~-gTIreNI~~g~~~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
++||+|++.+|. .|++||+.++....+ ++++.++++..++ +..+......
T Consensus 77 i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~-------------- 131 (214)
T cd03297 77 IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGL-----------DHLLNRYPAQ-------------- 131 (214)
T ss_pred EEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCC-----------HhHhhcCccc--------------
Confidence 999999999986 599999987643222 2233444444443 3333334444
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLE 686 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld 686 (728)
||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+
T Consensus 132 -----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (214)
T cd03297 132 -----LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVME 206 (214)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEE
Confidence 999999999999999999999999999999999999999999988753 799999999999885 599999999
Q ss_pred CCEEEEEc
Q 004826 687 NGKVIEQG 694 (728)
Q Consensus 687 ~G~Ive~G 694 (728)
+|++++.|
T Consensus 207 ~G~i~~~g 214 (214)
T cd03297 207 DGRLQYIG 214 (214)
T ss_pred CCEEEecC
Confidence 99999876
No 251
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=1.8e-42 Score=361.62 Aligned_cols=213 Identities=25% Similarity=0.336 Sum_probs=177.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHHhc-c
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESLRK-S 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~i~~~~lR~-~ 534 (728)
-|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+ ++|++|+|.+||.++.+++....++ .
T Consensus 7 ~l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVN-ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeC-CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 499999999996 45799999999999999999999999999999999998 7899999999999999988776665 5
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCCC---------CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGRL---------SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~~---------~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
+++++|++.+|.+ |+.+|+.++.. +.+ .+++.++++..++.+. -.+..+++ .
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~---~----- 151 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS------FLSRNVNE---G----- 151 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchh------hhcccccc---C-----
Confidence 8999999999975 89999876421 011 1223444554444311 11222211 2
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ- 678 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~- 678 (728)
||||||||++|||||+++|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..
T Consensus 152 --------------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~ 217 (252)
T CHL00131 152 --------------FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYI 217 (252)
T ss_pred --------------CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhh
Confidence 99999999999999999999999999999999999999999998875 47999999999999875
Q ss_pred -cCeEEEEeCCEEEEEcChHHH
Q 004826 679 -CDEIIVLENGKVIEQGSHDDL 699 (728)
Q Consensus 679 -aD~IiVld~G~Ive~Gth~eL 699 (728)
||+|++|++|++++.|+++++
T Consensus 218 ~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 218 KPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred hCCEEEEEeCCEEEEecChhhh
Confidence 899999999999999999844
No 252
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=1e-42 Score=340.60 Aligned_cols=164 Identities=33% Similarity=0.466 Sum_probs=152.4
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|++++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++||
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 579999999975568999999999999999999999999999999999999999999999983 689999
Q ss_pred cCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
+|++.+|++|++|||.++ .... ||||
T Consensus 70 ~q~~~~~~~tv~~nl~~~-----------------------------------~~~~-------------------LS~G 95 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP-----------------------------------WDDV-------------------LSGG 95 (166)
T ss_pred CCCCccccccHHHHhhcc-----------------------------------CCCC-------------------CCHH
Confidence 999999999999999874 1233 9999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 619 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 619 QrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
||||++||||++++|++|||||||++||+++.+.+.+.|+++ ++|+|++||+++....||+|++|++|-
T Consensus 96 ~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 96 EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 999999999999999999999999999999999999999886 689999999999989999999998864
No 253
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=4e-42 Score=358.48 Aligned_cols=209 Identities=29% Similarity=0.494 Sum_probs=182.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~-~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFG-QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGY 71 (251)
T ss_pred EEEEeceEEEEC-CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEE
Confidence 489999999996 46799999999999999999999999999999999999999999999987 347999
Q ss_pred EcCCCCCCc---ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 538 VPQDTVLFN---DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 538 V~Qd~~LF~---gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
|||++.++. .|+++|+.+. +..+++++.++++..++.+++...| ..
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~------------------- 120 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLIDAPM-----------QK------------------- 120 (251)
T ss_pred eccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHHhCCh-----------hh-------------------
Confidence 999998865 4899998764 3456778889999999877664422 22
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeCCEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVI 691 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~G~Iv 691 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++ +|+
T Consensus 121 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~ 199 (251)
T PRK09544 121 LSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC 199 (251)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE
Confidence 999999999999999999999999999999999999999999988753 799999999999985 5999999965 799
Q ss_pred EEcChHHHhhccchHHHHHH
Q 004826 692 EQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 692 e~Gth~eLl~~~g~Y~~l~~ 711 (728)
+.|+++|+.+ ...|.++|.
T Consensus 200 ~~g~~~~~~~-~~~~~~~~~ 218 (251)
T PRK09544 200 CSGTPEVVSL-HPEFISMFG 218 (251)
T ss_pred eeCCHHHHhC-CHHHHHHhC
Confidence 9999999864 456767663
No 254
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.8e-42 Score=347.77 Aligned_cols=185 Identities=25% Similarity=0.412 Sum_probs=164.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHH-hcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~~I 535 (728)
++++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.+||+++.+.+.... |+.+
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVG-GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeC-CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 47899999997 46899999999999999999999999999999999999 68999999999999999887654 5569
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
+||||++.+|.+ |+++|+ ... ...
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------~~~-----------~~~------------------- 104 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------RYV-----------NEG------------------- 104 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------hhc-----------ccc-------------------
Confidence 999999999976 555444 000 113
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHh--hcCeEEEEeCCEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM--QCDEIIVLENGKVI 691 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~--~aD~IiVld~G~Iv 691 (728)
||||||||++||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|+++
T Consensus 105 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~ 184 (200)
T cd03217 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIV 184 (200)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998754 799999999999998 69999999999999
Q ss_pred EEcChHHHh
Q 004826 692 EQGSHDDLL 700 (728)
Q Consensus 692 e~Gth~eLl 700 (728)
+.| +.|+.
T Consensus 185 ~~~-~~~~~ 192 (200)
T cd03217 185 KSG-DKELA 192 (200)
T ss_pred EEc-cHHHH
Confidence 999 45564
No 255
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2e-42 Score=340.89 Aligned_cols=170 Identities=34% Similarity=0.652 Sum_probs=158.5
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
++++||+++|++ +++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ..+|+.++||
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 478999999964 57999999999999999999999999999999999999999999999999998776 6788999999
Q ss_pred cCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 539 PQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
+|++.+|.+ |++||+. |||
T Consensus 79 ~q~~~~~~~~tv~~~~~------------------------------------------------------------LS~ 98 (173)
T cd03230 79 PEEPSLYENLTVRENLK------------------------------------------------------------LSG 98 (173)
T ss_pred ecCCccccCCcHHHHhh------------------------------------------------------------cCH
Confidence 999999986 9999973 699
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEEeCCEE
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKV 690 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVld~G~I 690 (728)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. ++.|+|++||+.+.+. .||+|++|++|++
T Consensus 99 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999875 4689999999999887 5999999999974
No 256
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-42 Score=342.70 Aligned_cols=172 Identities=46% Similarity=0.682 Sum_probs=160.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC--HHHHhcceE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--LESLRKSIG 536 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~--~~~lR~~Ia 536 (728)
|+++|++|+|+ ++++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++.+++ ...+++.++
T Consensus 1 i~~~~l~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYG-QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEEC-CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 57899999996 468999999999999999999999999999999999999999999999999998886 677889999
Q ss_pred EEcCCCCCCc-ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 537 VVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
|++|++.+|. .|++||+.+. |
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~----------------------------------------------------------l 101 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG----------------------------------------------------------L 101 (178)
T ss_pred EEecCCccCCCCCHHHheeec----------------------------------------------------------C
Confidence 9999999885 5999998763 6
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeCCE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGK 689 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~G~ 689 (728)
|||||||++|||||+++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||++..+. .||+|++|++|+
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999988765 599999999999998 599999999985
No 257
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.5e-42 Score=351.13 Aligned_cols=194 Identities=33% Similarity=0.500 Sum_probs=165.5
Q ss_pred EEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH----HHHhcceE
Q 004826 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESLRKSIG 536 (728)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~----~~lR~~Ia 536 (728)
++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.++
T Consensus 1 i~~l~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFG-DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEEC-CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 479999996 4689999999999999999999999999999999999999999999999999765542 34678999
Q ss_pred EEcCCCCCCc-ccHHHHHHcCCCC--C----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 537 VVPQDTVLFN-DTIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~~--~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
||+|++.+|. .|++||+.++... . .++++.++++..++.+...+. ...
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~-------------- 134 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQK-----------IYE-------------- 134 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCC-----------hhh--------------
Confidence 9999999997 6999999875321 1 234456666666665443221 223
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl 685 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||++..+..||+|++|
T Consensus 135 -----lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 135 -----LSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999999999999999998875 479999999999988899999885
No 258
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.8e-42 Score=338.26 Aligned_cols=170 Identities=58% Similarity=0.882 Sum_probs=162.0
Q ss_pred EEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 459 IQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
|+++|++++|++. .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++.+++...+|+.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 5789999999753 379999999999999999999999999999999999999999999999999998888889999999
Q ss_pred EcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
++|++.+|+.|++||+ |||
T Consensus 81 ~~~~~~~~~~t~~e~l-------------------------------------------------------------LS~ 99 (171)
T cd03228 81 VPQDPFLFSGTIRENI-------------------------------------------------------------LSG 99 (171)
T ss_pred EcCCchhccchHHHHh-------------------------------------------------------------hCH
Confidence 9999999999999998 699
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||++..++.||++++|++|+
T Consensus 100 G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 100 GQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999999999999999999999998877899999999999999999999999985
No 259
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=9.1e-42 Score=355.49 Aligned_cols=217 Identities=29% Similarity=0.442 Sum_probs=179.2
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
++++||+++ .+|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||.++.+.+...+++.++||
T Consensus 1 ~~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v 74 (248)
T PRK03695 1 MQLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYL 74 (248)
T ss_pred Ccccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEe
Confidence 356788875 27999999999999999999999999999999999995 599999999999999988899999999
Q ss_pred cCCCC-CCcccHHHHHHcCCCC-CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 539 PQDTV-LFNDTIFHNIRYGRLS-AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~-~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
||++. ++..|++||+.++.+. .+ ++++.++++..++.+.. ......
T Consensus 75 ~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~----------------- 126 (248)
T PRK03695 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL-----------GRSVNQ----------------- 126 (248)
T ss_pred cccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHh-----------cCCccc-----------------
Confidence 99985 5578999999987432 12 22344555555443322 222333
Q ss_pred CCCChhHHHHHHHHHHhcc-------CCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhcCeEE
Q 004826 613 VSLSGGEKQRVALARAFLK-------APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEII 683 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~-------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~aD~Ii 683 (728)
||||||||++|||||+. +|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|+
T Consensus 127 --LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 --LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred --CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 679999999999999999999999998875 479999999999965 5699999
Q ss_pred EEeCCEEEEEcChHHHhhccchHHHHHHh
Q 004826 684 VLENGKVIEQGSHDDLLTKAGRYAQLWGQ 712 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~g~Y~~l~~~ 712 (728)
+|++|++++.|+++++... ....+.+..
T Consensus 205 ~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 232 (248)
T PRK03695 205 LLKQGKLLASGRRDEVLTP-ENLAQVFGV 232 (248)
T ss_pred EEECCEEEEECCHHHHhCc-hHHHHHhCC
Confidence 9999999999999998653 234555543
No 260
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.8e-42 Score=341.69 Aligned_cols=172 Identities=31% Similarity=0.558 Sum_probs=158.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-HHHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~-~~~lR~~Ia 536 (728)
-|+++|++++| +|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+++ ...+|+.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 48999999999 899999999999999999999999999999999999999999999999999887 456788999
Q ss_pred EEcCCC----CCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 537 VVPQDT----VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 537 ~V~Qd~----~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
||+|++ .+++.|++||+.++.+
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------------------------ 104 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL------------------------------------------------------ 104 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh------------------------------------------------------
Confidence 999995 3456799999987531
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEE
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKV 690 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~I 690 (728)
||||||||++||||++.+|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 105 --LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 105 --LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred --cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 69999999999999999999999999999999999999999999874 47999999999998876 999999999975
No 261
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=3.6e-42 Score=341.28 Aligned_cols=177 Identities=38% Similarity=0.621 Sum_probs=161.2
Q ss_pred EEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEc
Q 004826 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (728)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~ 539 (728)
+++||+|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+++.|+||+
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 47899999964 67999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhH
Q 004826 540 QDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE 619 (728)
Q Consensus 540 Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQ 619 (728)
| +++..++.+++.. .... |||||
T Consensus 80 q---------------------------~l~~~gl~~~~~~-----------~~~~-------------------LS~G~ 102 (180)
T cd03214 80 Q---------------------------ALELLGLAHLADR-----------PFNE-------------------LSGGE 102 (180)
T ss_pred H---------------------------HHHHcCCHhHhcC-----------Cccc-------------------CCHHH
Confidence 9 6677777766543 2233 99999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeCCEEEEEc
Q 004826 620 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 620 rQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~G~Ive~G 694 (728)
|||++||||++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999988765 78999999999997 569999999999998764
No 262
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.3e-41 Score=350.50 Aligned_cols=205 Identities=27% Similarity=0.448 Sum_probs=168.1
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC----CCCEEEECCEeCCCCCHHHHhcceEEEcCCCC-CCc--
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT----HSGSIRIDGQDICEVTLESLRKSIGVVPQDTV-LFN-- 546 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p----~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~-LF~-- 546 (728)
+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++... +..++.|+||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998765 233468999999995 444
Q ss_pred ccHHHHHHcCC-----CC-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHH
Q 004826 547 DTIFHNIRYGR-----LS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEK 620 (728)
Q Consensus 547 gTIreNI~~g~-----~~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQr 620 (728)
-|+.||+.+.. +. ..++++.++++..++.+ + ++........ ||||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~-------------------LS~G~~ 131 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQ-------------------LSGGML 131 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhh-------------------cCHHHH
Confidence 59999986431 11 11234566666666542 1 1223333444 999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeCCEEEEEcChH
Q 004826 621 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHD 697 (728)
Q Consensus 621 QRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~G~Ive~Gth~ 697 (728)
||++||||++++|+||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 132 qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 211 (230)
T TIGR02770 132 QRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVK 211 (230)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998753 789999999999986 59999999999999999999
Q ss_pred HHhhc-cchHH
Q 004826 698 DLLTK-AGRYA 707 (728)
Q Consensus 698 eLl~~-~g~Y~ 707 (728)
++... .+.|.
T Consensus 212 ~~~~~~~~~~~ 222 (230)
T TIGR02770 212 EIFYNPKHETT 222 (230)
T ss_pred HHHhCcCCHHH
Confidence 99864 34343
No 263
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1.9e-41 Score=349.15 Aligned_cols=191 Identities=30% Similarity=0.425 Sum_probs=160.8
Q ss_pred eeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc-ccHHHHH
Q 004826 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIFHNI 553 (728)
Q Consensus 475 L~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~-gTIreNI 553 (728)
|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999999876542 489999999997 5999999
Q ss_pred HcCC----CCCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHH
Q 004826 554 RYGR----LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVAL 625 (728)
Q Consensus 554 ~~g~----~~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaI 625 (728)
.++. +..+++ ++.++++..++.+.... .... ||||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~-------------------LSgG~~qrv~l 125 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK-----------RPGQ-------------------LSGGMKQRVAI 125 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcC-----------Chhh-------------------CCHHHHHHHHH
Confidence 8752 223332 24445555555443222 1223 99999999999
Q ss_pred HHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeCCEEEEEcChHHHh
Q 004826 626 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 626 ARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~Gth~eLl 700 (728)
||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 126 a~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 126 ARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred HHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 999999999999999999999999999999998864 37899999999998765 9999999999999999876654
No 264
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.7e-41 Score=340.90 Aligned_cols=195 Identities=24% Similarity=0.379 Sum_probs=170.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ..+|+.++|+
T Consensus 1 l~i~~l~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERD-GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeC-CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 47899999996 467999999999999999999999999999999999999999999999999987654 5788999999
Q ss_pred cCCCCCC-cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 539 PQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
+|++.++ +.|++||+.+..+..+++++.++++..++.++... .+ .. |||
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~-------------------LS~ 128 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDR-------PV----AQ-------------------LSA 128 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-------ch----hh-------------------CCH
Confidence 9999886 68999999887655567778888888888654322 11 22 999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCch-HHhhcCeEEEE
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT-TAMQCDEIIVL 685 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLs-ti~~aD~IiVl 685 (728)
|||||++||||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+.. ....+|+.+++
T Consensus 129 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999999999999999999999999999999998764 4799999999865 55668998877
No 265
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.2e-41 Score=386.22 Aligned_cols=213 Identities=24% Similarity=0.436 Sum_probs=183.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHh-cceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR-~~Ia 536 (728)
-|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.|+
T Consensus 11 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYS-GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 599999999996 46799999999999999999999999999999999999999999999999999888776655 5799
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCCCC--CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~--sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
||+|++.+|.. |++||+.++.... .++++.++++..++.+. .+..++ .
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~----~------------------ 140 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD-------LDSSAG----S------------------ 140 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCcc-------ccCChh----h------------------
Confidence 99999998875 9999999874321 12345555555554322 222222 2
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 691 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv 691 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. ||+|++|++|+|+
T Consensus 141 -LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~ 219 (510)
T PRK15439 141 -LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA 219 (510)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 47999999999998754 9999999999999
Q ss_pred EEcChHHHhh
Q 004826 692 EQGSHDDLLT 701 (728)
Q Consensus 692 e~Gth~eLl~ 701 (728)
+.|+++++..
T Consensus 220 ~~g~~~~~~~ 229 (510)
T PRK15439 220 LSGKTADLST 229 (510)
T ss_pred EecChHHcCH
Confidence 9999988764
No 266
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-41 Score=393.22 Aligned_cols=225 Identities=28% Similarity=0.440 Sum_probs=185.8
Q ss_pred eEEEEEEEEEecC----------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC
Q 004826 458 SIQFDNVHFSYLT----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (728)
Q Consensus 458 ~I~f~nVsF~Y~~----------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~ 527 (728)
-|+++||+++|+. ..++|+||||+|++||++||||+||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 4999999999962 247999999999999999999999999999999999999999999999999998876
Q ss_pred HH---HHhcceEEEcCCCC--CCc-ccHHHHHHcCC--CCC-C----HHHHHHHHHHhccH-HHHHhCCCcccchhhccc
Q 004826 528 LE---SLRKSIGVVPQDTV--LFN-DTIFHNIRYGR--LSA-T----EEEVYDAARRAAIH-DTIMNFPAKYSTVVGERG 593 (728)
Q Consensus 528 ~~---~lR~~Ia~V~Qd~~--LF~-gTIreNI~~g~--~~~-s----deei~~A~~~a~l~-~~I~~LP~G~dT~vgE~G 593 (728)
.. .+|+.|+||+|++. ++. .|+.||+.++. ... + ++++.++++..++. +.....| +
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-------~--- 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP-------H--- 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-------c---
Confidence 43 46789999999983 664 59999997631 011 1 13455555655553 2222222 1
Q ss_pred cccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEecc
Q 004826 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAH 671 (728)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaH 671 (728)
.||||||||++|||||+.+|+|||||||||+||..+.+.|.+.|+++.+ +.|+|+|||
T Consensus 463 --------------------~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isH 522 (623)
T PRK10261 463 --------------------EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISH 522 (623)
T ss_pred --------------------cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 2999999999999999999999999999999999999999999988753 789999999
Q ss_pred CchHHhh-cCeEEEEeCCEEEEEcChHHHhhc-cchHH-HHHHh
Q 004826 672 RLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK-AGRYA-QLWGQ 712 (728)
Q Consensus 672 RLsti~~-aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~-~l~~~ 712 (728)
+++.+.. ||+|+||++|+|+|.|+.+++... ...|. .++..
T Consensus 523 dl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~~l~~~ 566 (623)
T PRK10261 523 DMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLMAA 566 (623)
T ss_pred CHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHHHHHhh
Confidence 9998865 999999999999999999999864 34564 45543
No 267
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-41 Score=386.92 Aligned_cols=212 Identities=25% Similarity=0.440 Sum_probs=178.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHH-Hhcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLES-LRKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~i~~~~-lR~~ 534 (728)
-|+++||+++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+.
T Consensus 5 ~l~~~nl~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeC-CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 489999999996 46899999999999999999999999999999999999996 8999999999998877654 4678
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCCCC-----CCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGRLS-----ATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~~~-----~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|+||||++.+|.. |++|||.++... .+.+ ++.++++..++. +-.+..++ .
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~----~--------- 143 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-------INPATPVG----N--------- 143 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-------CCcccchh----h---------
Confidence 9999999998864 999999887421 1222 233333333332 11222222 2
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|
T Consensus 144 ----------LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v 213 (506)
T PRK13549 144 ----------LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTI 213 (506)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEE
Confidence 99999999999999999999999999999999999999999998864 47899999999998865 9999
Q ss_pred EEEeCCEEEEEcChHHHh
Q 004826 683 IVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl 700 (728)
++|++|+|++.|+.+++.
T Consensus 214 ~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 214 CVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred EEEECCEEeeecccccCC
Confidence 999999999999988764
No 268
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-41 Score=340.52 Aligned_cols=195 Identities=24% Similarity=0.332 Sum_probs=169.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.... ..++++++|+
T Consensus 2 l~~~~l~~~~~-~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~ 79 (204)
T PRK13538 2 LEARNLACERD-ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79 (204)
T ss_pred eEEEEEEEEEC-CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEe
Confidence 78999999996 467999999999999999999999999999999999999999999999999988754 4677899999
Q ss_pred cCCCCCCc-ccHHHHHHcCCCC---CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 539 PQDTVLFN-DTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~---~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
+|++.++. .|++|||.++.+. .+++++.++++..++.++.... ...
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~-----------~~~------------------- 129 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VRQ------------------- 129 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCC-----------hhh-------------------
Confidence 99998886 6999999876432 3456677888888887654321 123
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVL 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVl 685 (728)
||||||||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 130 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 130 LSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999999999999999999998864 47899999999999854 5677776
No 269
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-41 Score=387.92 Aligned_cols=213 Identities=22% Similarity=0.375 Sum_probs=179.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia 536 (728)
-|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.|+
T Consensus 5 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcC-CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 489999999996 467999999999999999999999999999999999999999999999999998887655 456799
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCC------C---CCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRL------S---ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~------~---~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
||+|++.+|.. |++||+.++.. . .+. +++.++++..++. +-.+..++ .
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-------~~~~~~~~----~------- 145 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-------VDLDEKVA----N------- 145 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-------CCcccchh----h-------
Confidence 99999998875 99999987631 0 111 2233344443332 22333332 2
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cC
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CD 680 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD 680 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||
T Consensus 146 ------------LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d 213 (510)
T PRK09700 146 ------------LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICD 213 (510)
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999999999998874 47999999999998865 99
Q ss_pred eEEEEeCCEEEEEcChHHHhh
Q 004826 681 EIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~eLl~ 701 (728)
+|++|++|+|++.|+.+++..
T Consensus 214 ~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 214 RYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred EEEEEECCEEeeecchhhCCH
Confidence 999999999999999888753
No 270
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.9e-41 Score=339.51 Aligned_cols=194 Identities=23% Similarity=0.354 Sum_probs=164.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.. ....+|++++|+
T Consensus 2 l~~~~l~~~~~-~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~ 79 (200)
T PRK13540 2 LDVIELDFDYH-DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEEeC-CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEe
Confidence 78999999996 4679999999999999999999999999999999999999999999999999875 356788999999
Q ss_pred cCCCCCC-cccHHHHHHcCC-CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 539 PQDTVLF-NDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~-~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
+|++.+| ..|++||+.++. ....++++.++++..++.+. .+.+++ . ||
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~----~-------------------LS 129 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHL-------IDYPCG----L-------------------LS 129 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchh-------hhCChh----h-------------------cC
Confidence 9999986 579999999863 11223344455554444322 222222 2 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEE
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIV 684 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiV 684 (728)
||||||++||||++++|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+.+.+.+||.-.+
T Consensus 130 ~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 130 SGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999999999999999999999863 57999999999999999997554
No 271
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=4e-41 Score=372.92 Aligned_cols=224 Identities=33% Similarity=0.467 Sum_probs=183.2
Q ss_pred eEEEEEEEEEecC------C----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEe--CCC
Q 004826 458 SIQFDNVHFSYLT------E----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD--ICE 525 (728)
Q Consensus 458 ~I~f~nVsF~Y~~------~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d--i~~ 525 (728)
-++++|++..|.. . ..+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 4889999999973 1 368999999999999999999999999999999999999999999999977 343
Q ss_pred CCHHHHhcceEEEcCCCCCC---cccHHHHHHcC----CCC--C-CHHHHHHHHHHhccHH-HHHhCCCcccchhhcccc
Q 004826 526 VTLESLRKSIGVVPQDTVLF---NDTIFHNIRYG----RLS--A-TEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGL 594 (728)
Q Consensus 526 i~~~~lR~~Ia~V~Qd~~LF---~gTIreNI~~g----~~~--~-sdeei~~A~~~a~l~~-~I~~LP~G~dT~vgE~G~ 594 (728)
-....+|+.+-+|+|||+-. ..||+++|.-- .+. + ..+.+.+.++..++.+ +..+
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~r-------------- 425 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDR-------------- 425 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhc--------------
Confidence 33566888999999999742 36999998432 111 1 1123444555555543 2222
Q ss_pred ccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccC
Q 004826 595 KGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHR 672 (728)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHR 672 (728)
.|. .||||||||+||||||..+|++||+||||||||+.+.+.|.+.|.++.+ |.|.|+|||.
T Consensus 426 --------------yP~--elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHD 489 (539)
T COG1123 426 --------------YPH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHD 489 (539)
T ss_pred --------------Cch--hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCC
Confidence 222 2999999999999999999999999999999999999999999987754 6999999999
Q ss_pred chHHhh-cCeEEEEeCCEEEEEcChHHHhhc-cchHHHHHH
Q 004826 673 LTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWG 711 (728)
Q Consensus 673 Lsti~~-aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~l~~ 711 (728)
++.++. ||||+||++|+|||.|+.+++.+. ...|.+..-
T Consensus 490 l~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 490 LAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred HHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHHH
Confidence 999987 999999999999999999999875 566765543
No 272
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.8e-41 Score=349.31 Aligned_cols=193 Identities=26% Similarity=0.426 Sum_probs=159.6
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEc-CCCCCC-ccc
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP-QDTVLF-NDT 548 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~-Qd~~LF-~gT 548 (728)
++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+. ...+++.++|++ |++.+| ..|
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~t 111 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLP 111 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCc
Confidence 35799999999999999999999999999999999999999999999999987653 356788999997 667776 579
Q ss_pred HHHHHHcCCC--CCCHHHHH----HHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH
Q 004826 549 IFHNIRYGRL--SATEEEVY----DAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR 622 (728)
Q Consensus 549 IreNI~~g~~--~~sdeei~----~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR 622 (728)
++||+.+... ..+.++.. ++++..++ ++..|+.++ . ||||||||
T Consensus 112 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl-------~~~~~~~~~----~-------------------LS~G~~qr 161 (236)
T cd03267 112 VIDSFYLLAAIYDLPPARFKKRLDELSELLDL-------EELLDTPVR----Q-------------------LSLGQRMR 161 (236)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhHhcCChh----h-------------------CCHHHHHH
Confidence 9999976531 23333332 22332232 333344432 2 99999999
Q ss_pred HHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCCEEEEEc
Q 004826 623 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQG 694 (728)
Q Consensus 623 IaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~G 694 (728)
++|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 162 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 162 AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998753 7899999999998755 9999999999999865
No 273
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=8.9e-41 Score=325.98 Aligned_cols=159 Identities=33% Similarity=0.570 Sum_probs=148.6
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia~ 537 (728)
|+++||+++|+ ++++|+++||+|+|||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+. +..|++++|
T Consensus 1 l~~~~l~~~~~-~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFG-GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEEC-CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 57999999996 4589999999999999999999999999999999999999999999999999998876 456788999
Q ss_pred EcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
++| |||
T Consensus 80 ~~q--------------------------------------------------------------------------LS~ 85 (163)
T cd03216 80 VYQ--------------------------------------------------------------------------LSV 85 (163)
T ss_pred EEe--------------------------------------------------------------------------cCH
Confidence 999 699
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEEE
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive 692 (728)
|||||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||++..+.. ||+|++|++|++++
T Consensus 86 G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 86 GERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999998874 47999999999997754 99999999999985
No 274
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=8e-41 Score=382.39 Aligned_cols=212 Identities=28% Similarity=0.454 Sum_probs=177.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia 536 (728)
-|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+... .|+.|+
T Consensus 4 ~i~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeC-CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 489999999996 468999999999999999999999999999999999999999999999999997766544 467899
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCCC------CCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRLS------ATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~------~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
||+|++.+|.. |++|||.++... .+.+ ++.++++..++. +-.+..++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~--------------- 140 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-------FSSDKLVG--------------- 140 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-------CCccCchh---------------
Confidence 99999988864 999999986321 1222 233333333332 22233332
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~Ii 683 (728)
+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|+
T Consensus 141 --------~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~ 212 (501)
T PRK10762 141 --------ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVT 212 (501)
T ss_pred --------hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 299999999999999999999999999999999999999999998764 4689999999999875 599999
Q ss_pred EEeCCEEEEEcChHHHh
Q 004826 684 VLENGKVIEQGSHDDLL 700 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl 700 (728)
+|++|+|++.|+.+++.
T Consensus 213 ~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 213 VFRDGQFIAEREVADLT 229 (501)
T ss_pred EEeCCEEEEecCcCcCC
Confidence 99999999999988764
No 275
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=5.5e-41 Score=386.17 Aligned_cols=214 Identities=32% Similarity=0.534 Sum_probs=178.0
Q ss_pred eEEEEEEEEEecC----------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC
Q 004826 458 SIQFDNVHFSYLT----------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (728)
Q Consensus 458 ~I~f~nVsF~Y~~----------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~ 527 (728)
-|+++||+++|+. ++++|+|+||+|++||++||+|+||||||||+++|+|++ |++|+|.+||.++.+++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 4899999999962 357999999999999999999999999999999999998 59999999999998776
Q ss_pred HHH---HhcceEEEcCCC--CCCc-ccHHHHHHcCCC----CCC----HHHHHHHHHHhccH-HHHHhCCCcccchhhcc
Q 004826 528 LES---LRKSIGVVPQDT--VLFN-DTIFHNIRYGRL----SAT----EEEVYDAARRAAIH-DTIMNFPAKYSTVVGER 592 (728)
Q Consensus 528 ~~~---lR~~Ia~V~Qd~--~LF~-gTIreNI~~g~~----~~s----deei~~A~~~a~l~-~~I~~LP~G~dT~vgE~ 592 (728)
... +|+.|+||||++ .+|. .|++||+.++.. ..+ ++++.++++..++. +...+ .
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~ 422 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHR-----------Y 422 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhc-----------C
Confidence 543 578899999998 3665 599999987521 112 12344444444442 12111 1
Q ss_pred ccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEec
Q 004826 593 GLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIA 670 (728)
Q Consensus 593 G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIa 670 (728)
-.. ||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+||
T Consensus 423 ~~~-------------------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vs 483 (529)
T PRK15134 423 PAE-------------------FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFIS 483 (529)
T ss_pred Ccc-------------------CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 122 999999999999999999999999999999999999999999998753 79999999
Q ss_pred cCchHHhh-cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 671 HRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 671 HRLsti~~-aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++..+.. ||+|++|++|+|++.|++++++..
T Consensus 484 Hd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 484 HDLHVVRALCHQVIVLRQGEVVEQGDCERVFAA 516 (529)
T ss_pred CCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcC
Confidence 99998865 999999999999999999999754
No 276
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-41 Score=343.15 Aligned_cols=207 Identities=35% Similarity=0.557 Sum_probs=182.6
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHh----cceEEEcCCCCCCc-cc
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR----KSIGVVPQDTVLFN-DT 548 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR----~~Ia~V~Qd~~LF~-gT 548 (728)
-++|+||+|+.||+..|-|-||||||||+++|.||++|++|+|++||.|+..++.++|| +.+++|+|..-||. .|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrt 122 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRT 122 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchh
Confidence 47899999999999999999999999999999999999999999999999999987765 57999999999995 69
Q ss_pred HHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH
Q 004826 549 IFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR 622 (728)
Q Consensus 549 IreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR 622 (728)
|.||..||-+ ..+ ++...++++.+++++|=.+.|+- ||||++||
T Consensus 123 Vl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~e------------------------------LSGGMqQR 172 (386)
T COG4175 123 VLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNE------------------------------LSGGMQQR 172 (386)
T ss_pred HhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCccc------------------------------ccchHHHH
Confidence 9999999963 233 33467888889999988777642 99999999
Q ss_pred HHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH-HhhcCeEEEEeCCEEEEEcChHHH
Q 004826 623 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLENGKVIEQGSHDDL 699 (728)
Q Consensus 623 IaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst-i~~aD~IiVld~G~Ive~Gth~eL 699 (728)
+.|||||..||+||++|||.|||||--....|+-|.++. -+||+++|||.|.. ++-.|||..|++|+||+.||++|.
T Consensus 173 VGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eI 252 (386)
T COG4175 173 VGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHH
Confidence 999999999999999999999999999999999887654 36999999999985 677999999999999999999999
Q ss_pred hhcc-chH-HHHH
Q 004826 700 LTKA-GRY-AQLW 710 (728)
Q Consensus 700 l~~~-g~Y-~~l~ 710 (728)
+.+. ..| ++++
T Consensus 253 l~~PAndYV~~Fv 265 (386)
T COG4175 253 LLNPANDYVRDFV 265 (386)
T ss_pred HcCccHHHHHHHH
Confidence 9763 334 4444
No 277
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.7e-40 Score=336.67 Aligned_cols=194 Identities=25% Similarity=0.366 Sum_probs=168.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|++||.++.. .. +|++++||
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~~ 78 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHYL 78 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEEe
Confidence 789999999964 579999999999999999999999999999999999999999999999998753 22 88899999
Q ss_pred cCCCCCC-cccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 539 PQDTVLF-NDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 539 ~Qd~~LF-~gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+|++.++ +.|++||+.+... ...++++.++++..++.++.. .|- .. |
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~----------~~-------------------L 128 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAH-LPF----------GY-------------------L 128 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHc-CCh----------hh-------------------c
Confidence 9988775 6899999987532 234566888888888876432 221 12 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH-cCCCeEEEeccCchHHhhcCeEEEEeC
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
|||||||++||||++++|++|||||||++||+.+.+.+.+.|+++ .+++|+|++||++..+.. |+++.++.
T Consensus 129 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999999999999999999999875 357999999999999998 99988854
No 278
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-41 Score=381.19 Aligned_cols=213 Identities=26% Similarity=0.427 Sum_probs=174.5
Q ss_pred EEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceEEEc
Q 004826 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVP 539 (728)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia~V~ 539 (728)
++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+. +.+|+.++|||
T Consensus 1 ~~nl~~~~~-~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeC-CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 468999996 4689999999999999999999999999999999999999999999999999987654 45678899999
Q ss_pred CCCCCCc-ccHHHHHHcCCC---C--CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 540 QDTVLFN-DTIFHNIRYGRL---S--ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 540 Qd~~LF~-gTIreNI~~g~~---~--~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
|++.+|. .|++||+.++.. . .+.++.++. +.+.++.+ |++.........
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~------------------ 134 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRD-----TKAIFDEL--DIDIDPRAKVAT------------------ 134 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHHH-----HHHHHHHc--CCCCCccCchhh------------------
Confidence 9998775 599999988642 1 122222211 22233332 222222222223
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEEeCCEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVI 691 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVld~G~Iv 691 (728)
||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|+
T Consensus 135 -LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~ 213 (491)
T PRK10982 135 -LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213 (491)
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998864 4789999999999876 49999999999999
Q ss_pred EEcChHHHh
Q 004826 692 EQGSHDDLL 700 (728)
Q Consensus 692 e~Gth~eLl 700 (728)
+.|+.+++.
T Consensus 214 ~~~~~~~~~ 222 (491)
T PRK10982 214 ATQPLAGLT 222 (491)
T ss_pred eecChhhCC
Confidence 999988764
No 279
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-40 Score=380.50 Aligned_cols=208 Identities=26% Similarity=0.477 Sum_probs=174.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia 536 (728)
-|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|+
T Consensus 4 ~l~~~~l~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEEC-CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 489999999996 4679999999999999999999999999999999999999999999999999976553 45788999
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCC----C-CCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRL----S-ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~----~-~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
||+|++.+|.. |++||+.++.. . .+. +++.++++..++.+ -.+..++ .
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~----~----------- 140 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI-------DPDTPLK----Y----------- 140 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCC-------CcCCchh----h-----------
Confidence 99999998875 99999998642 1 122 22333444433321 1222222 2
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++
T Consensus 141 --------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~ 212 (501)
T PRK11288 141 --------LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITV 212 (501)
T ss_pred --------CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999998864 47999999999998765 999999
Q ss_pred EeCCEEEEEcCh
Q 004826 685 LENGKVIEQGSH 696 (728)
Q Consensus 685 ld~G~Ive~Gth 696 (728)
|++|+|++.++.
T Consensus 213 l~~G~i~~~~~~ 224 (501)
T PRK11288 213 FKDGRYVATFDD 224 (501)
T ss_pred EECCEEEeecCc
Confidence 999999987753
No 280
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=343.17 Aligned_cols=224 Identities=32% Similarity=0.525 Sum_probs=182.5
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-C----CCCEEEECCEeCCCCCHHH
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-T----HSGSIRIDGQDICEVTLES 530 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-p----~~G~I~idG~di~~i~~~~ 530 (728)
++++|++-.|..+ .++++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999743 379999999999999999999999999999999999998 4 6799999999999999876
Q ss_pred Hh----cceEEEcCCCCC-Cc--cc----HHHHHHcCCCCCC----HHHHHHHHHHhccHH---HHHhCCCcccchhhcc
Q 004826 531 LR----KSIGVVPQDTVL-FN--DT----IFHNIRYGRLSAT----EEEVYDAARRAAIHD---TIMNFPAKYSTVVGER 592 (728)
Q Consensus 531 lR----~~Ia~V~Qd~~L-F~--gT----IreNI~~g~~~~s----deei~~A~~~a~l~~---~I~~LP~G~dT~vgE~ 592 (728)
+| +.||||||||.- || -| |.|=+.......+ .++..++++.+++.+ .+.+.|+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPh--------- 152 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPH--------- 152 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCc---------
Confidence 43 489999999842 33 13 3344443221101 335677777777764 2333332
Q ss_pred ccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEec
Q 004826 593 GLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIA 670 (728)
Q Consensus 593 G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIa 670 (728)
.||||||||+.||=||+.+|++||-||||+|||..+.++|.+-|+++. .+.|+|+||
T Consensus 153 ---------------------elSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilIT 211 (316)
T COG0444 153 ---------------------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILIT 211 (316)
T ss_pred ---------------------ccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 299999999999999999999999999999999999999999998876 489999999
Q ss_pred cCchHHhh-cCeEEEEeCCEEEEEcChHHHhhc--cchHHHHHHh
Q 004826 671 HRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK--AGRYAQLWGQ 712 (728)
Q Consensus 671 HRLsti~~-aD~IiVld~G~Ive~Gth~eLl~~--~g~Y~~l~~~ 712 (728)
|+|..+.. ||||+||..|+|||.|+-+|+.++ +.+.+.|++.
T Consensus 212 HDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~Ll~s 256 (316)
T COG0444 212 HDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRGLLNS 256 (316)
T ss_pred CCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHHHHHh
Confidence 99997754 999999999999999999999975 3333556554
No 281
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-41 Score=325.51 Aligned_cols=214 Identities=31% Similarity=0.514 Sum_probs=185.6
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
+++.+++-+|++..++++||||+++.||.++|.|++||||||+++.|..|..|++|+|.+||.|+...+ ...|++||++
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IGVl 80 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIGVL 80 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhccee
Confidence 678899999987556899999999999999999999999999999999999999999999999998854 6789999999
Q ss_pred cCCCCCCcc-cHHHHHHcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRL--SATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~--~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+-+.-|+.. |.+|||.|... +.++. ++.+.-+.-++.+. .|+.+||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~-------~~rRv~~-------------------- 133 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEY-------LDRRVGE-------------------- 133 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHH-------HHHHHhh--------------------
Confidence 988888865 99999988632 22222 33333333444443 3455554
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHh-hcCeEEEEeCCE
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAM-QCDEIIVLENGK 689 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~-~aD~IiVld~G~ 689 (728)
||-|+|||++|||||++||+|+|||||||+||-.+-+.+.+-+.++.. ||++|+-||-++.++ -||+++|+.+|+
T Consensus 134 ---~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 134 ---FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred ---hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 999999999999999999999999999999999999999999998876 899999999999998 699999999999
Q ss_pred EEEEcChHHHhhcc
Q 004826 690 VIEQGSHDDLLTKA 703 (728)
Q Consensus 690 Ive~Gth~eLl~~~ 703 (728)
+|..|+.++|.++.
T Consensus 211 vv~~gs~~~l~~r~ 224 (245)
T COG4555 211 VVLEGSIEALDART 224 (245)
T ss_pred EEEcCCHHHHHHHH
Confidence 99999999998753
No 282
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-41 Score=391.14 Aligned_cols=218 Identities=28% Similarity=0.435 Sum_probs=176.5
Q ss_pred eEEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC----------
Q 004826 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC---------- 524 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~---------- 524 (728)
-|+++|++++|+. +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 5999999999963 347999999999999999999999999999999999999999999999998652
Q ss_pred CCCHH---HHh-cceEEEcCCC--CCCc-ccHHHHHHcCCC---CCCH----HHHHHHHHHhccHHHHHhCCCcccchhh
Q 004826 525 EVTLE---SLR-KSIGVVPQDT--VLFN-DTIFHNIRYGRL---SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (728)
Q Consensus 525 ~i~~~---~lR-~~Ia~V~Qd~--~LF~-gTIreNI~~g~~---~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vg 590 (728)
+.+.. .+| +.||||+|+| .++. -||+|||.++.. ..+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 344 5799999998 5775 599999987521 1222 234445555544210 01111
Q ss_pred ccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEE
Q 004826 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIF 668 (728)
Q Consensus 591 E~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIv 668 (728)
..-. +||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+
T Consensus 164 ~~~~-------------------~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~ 224 (623)
T PRK10261 164 RYPH-------------------QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIF 224 (623)
T ss_pred CCCc-------------------cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 1112 2999999999999999999999999999999999999999999998753 799999
Q ss_pred eccCchHHhh-cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 669 IAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 669 IaHRLsti~~-aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|||++..+.. ||+|+||++|+|++.|+++++...
T Consensus 225 itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 225 ITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred EcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhcC
Confidence 9999998755 999999999999999999998753
No 283
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-40 Score=327.06 Aligned_cols=220 Identities=30% Similarity=0.495 Sum_probs=185.9
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia~ 537 (728)
++++||+-.|.+ .++|++|||++++||+|+++|++|+||||+++.|+|+.+|.+|+|.++|.||...+++. .|.-|+|
T Consensus 4 L~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 4 LEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred eeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 789999999964 68999999999999999999999999999999999999999999999999999997655 5678999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
|||.-.+|.. ||+||+.+|.-...+++- ....+++.-+-+|. +......+|-. ||
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP~-Lker~~~~aG~-------------------LS 138 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFPR-LKERRNQRAGT-------------------LS 138 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHChh-HHHHhcCcccC-------------------CC
Confidence 9999999965 999999988422221111 11112233344443 33444556655 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeCCEEEEE
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~G~Ive~ 693 (728)
|||+|-+||||||+.+|++|+|||||.+|-|.--+.|++.|+++.+ +-|+++|-++.... +-|||-+||++|+||.+
T Consensus 139 GGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~ 218 (237)
T COG0410 139 GGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLS 218 (237)
T ss_pred hHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999874 56999999999865 56999999999999999
Q ss_pred cChHHHhhcc
Q 004826 694 GSHDDLLTKA 703 (728)
Q Consensus 694 Gth~eLl~~~ 703 (728)
|+.+||.+..
T Consensus 219 G~~~eL~~~~ 228 (237)
T COG0410 219 GTAAELLADP 228 (237)
T ss_pred cCHHHHhcCH
Confidence 9999998764
No 284
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=1.7e-40 Score=334.31 Aligned_cols=193 Identities=24% Similarity=0.351 Sum_probs=164.9
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRG-ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEEC-CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 57899999996 467999999999999999999999999999999999999999999999999998775 4678899999
Q ss_pred cCCCCCCc-ccHHHHHHcCCCCC--CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 539 PQDTVLFN-DTIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~~~~--sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+|++.+|. .|++||+.++.+.. .++++.++++..++.+++.. .+ .. |
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~----~~-------------------L 128 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDL-------PA----AQ-------------------L 128 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcC-------Ch----hh-------------------c
Confidence 99999886 69999998763211 23457788888888766533 22 22 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH-cCCCeEEEeccCchHHhhcCeEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQCDEIIV 684 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRLsti~~aD~IiV 684 (728)
|||||||++||||++++|++|||||||++||+.+.+.+.+.|+++ .+++|+|++||+...+. +|+.+.
T Consensus 129 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 129 SAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 999999999999999999999999999999999999999999886 45789999999986543 356554
No 285
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=2.7e-40 Score=386.28 Aligned_cols=204 Identities=31% Similarity=0.484 Sum_probs=173.1
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC--CCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc-c
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH--SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-D 547 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~--~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~-g 547 (728)
++++|+|+|++++|||++||+||||||||||+++|+|+.+|+ +|+|.+||+++. ...+++++||+|++.+|. .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcC
Confidence 356999999999999999999999999999999999999985 999999999874 245678999999999996 5
Q ss_pred cHHHHHHcCC----C-CCCHHHHHHHHHHhccHHHHH--hCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHH
Q 004826 548 TIFHNIRYGR----L-SATEEEVYDAARRAAIHDTIM--NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEK 620 (728)
Q Consensus 548 TIreNI~~g~----~-~~sdeei~~A~~~a~l~~~I~--~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQr 620 (728)
|++|||.++. | +.++++..+.+ ++.++ .|++..||.+|++..+ .||||||
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~t~vg~~~~~------------------~LSgGer 212 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVA-----ESVISELGLTKCENTIIGNSFIR------------------GISGGER 212 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHH-----HHHHHHcCChhhcCceeCCCCCC------------------CcChhhh
Confidence 9999998752 2 23444433222 23333 3455669999876432 2999999
Q ss_pred HHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchH--HhhcCeEEEEeCCEEEEEcChH
Q 004826 621 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQCDEIIVLENGKVIEQGSHD 697 (728)
Q Consensus 621 QRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLst--i~~aD~IiVld~G~Ive~Gth~ 697 (728)
||++|||||+++|+||+||||||+||+.+...+.+.|+++. +++|+|+++|+++. .+.+|+|++|++|+++..|+++
T Consensus 213 qRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~ 292 (659)
T PLN03211 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGS 292 (659)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHH
Confidence 99999999999999999999999999999999999999876 58999999999984 4669999999999999999999
Q ss_pred HHhh
Q 004826 698 DLLT 701 (728)
Q Consensus 698 eLl~ 701 (728)
++.+
T Consensus 293 ~~~~ 296 (659)
T PLN03211 293 DAMA 296 (659)
T ss_pred HHHH
Confidence 9964
No 286
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1.7e-40 Score=378.96 Aligned_cols=212 Identities=25% Similarity=0.298 Sum_probs=183.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLS-DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcC-CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 389999999996 4569999999999999999999999999999999999999999999999998887777778888999
Q ss_pred EcCCCCC---------CcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 538 VPQDTVL---------FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 538 V~Qd~~L---------F~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
|+|++.+ +..|++||+.++. ..++++.++++..++.+..... ++ .
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~-------~~----~------------- 135 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITALLDRR-------FK----Y------------- 135 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhhhhCC-------cc----c-------------
Confidence 9998753 2469999987652 1245567777777765543322 21 2
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||++..+.+ ||+|++|+
T Consensus 136 ------LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~ 209 (490)
T PRK10938 136 ------LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLA 209 (490)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEE
Confidence 999999999999999999999999999999999999999999988743 6899999999998865 99999999
Q ss_pred CCEEEEEcChHHHhhc
Q 004826 687 NGKVIEQGSHDDLLTK 702 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~ 702 (728)
+|+|++.|+.+++++.
T Consensus 210 ~G~i~~~~~~~~~~~~ 225 (490)
T PRK10938 210 DCTLAETGEREEILQQ 225 (490)
T ss_pred CCEEEEeCCHHHHhcc
Confidence 9999999999888754
No 287
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-40 Score=381.29 Aligned_cols=218 Identities=30% Similarity=0.497 Sum_probs=178.9
Q ss_pred eEEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCCCHH
Q 004826 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~i~~~ 529 (728)
-|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.+||.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 4899999999973 25899999999999999999999999999999999999987 799999999999887754
Q ss_pred H---Hh-cceEEEcCCCC--CCc-ccHHHHHHcCC---CCCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccc
Q 004826 530 S---LR-KSIGVVPQDTV--LFN-DTIFHNIRYGR---LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (728)
Q Consensus 530 ~---lR-~~Ia~V~Qd~~--LF~-gTIreNI~~g~---~~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~ 595 (728)
. +| +.|+||+|++. ++. .|++||+.++. ...+ ++++.++++..++.+.... .|..+ .
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~----~~~~~----~- 155 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKR----LTDYP----H- 155 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHH----HhhCC----c-
Confidence 3 34 58999999985 443 59999986421 1122 2345566666665431100 11111 1
Q ss_pred cchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCc
Q 004826 596 GRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRL 673 (728)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRL 673 (728)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. .++|+|+|||++
T Consensus 156 ------------------~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 217 (529)
T PRK15134 156 ------------------QLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL 217 (529)
T ss_pred ------------------ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH
Confidence 299999999999999999999999999999999999999999998875 379999999999
Q ss_pred hHHhh-cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 674 TTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 674 sti~~-aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
..+.. ||+|++|++|+|++.|+.++++..
T Consensus 218 ~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 247 (529)
T PRK15134 218 SIVRKLADRVAVMQNGRCVEQNRAATLFSA 247 (529)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHHHHhhC
Confidence 98764 999999999999999999998754
No 288
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.1e-40 Score=335.56 Aligned_cols=196 Identities=24% Similarity=0.330 Sum_probs=164.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++|++++|+ ++++++++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+. ..++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRN-EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecC-CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence 499999999996 45799999999999999999999999999999999999999999999999998753 34668999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCC--CCC-HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRL--SAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s-deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
++|++.+|.+ |++||+.++.. ... ++.+.++++..++. +.+++.++ .
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~----~------------------ 137 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-------GYEDTLVR----Q------------------ 137 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-------hhccCChh----h------------------
Confidence 9999999986 99999977532 122 23344455544432 23344332 2
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEEeC
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLEN 687 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVld~ 687 (728)
||||||||++||||++++|++|||||||++||+++.+.+.+.|+++. +++|+|++||+++.+. .||+|++++.
T Consensus 138 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 138 -LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999999999999999999998753 4699999999999885 5899999874
No 289
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=3.2e-40 Score=338.59 Aligned_cols=198 Identities=27% Similarity=0.412 Sum_probs=161.3
Q ss_pred EEEEEEEEEecC------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC--C--EeCCCCCH
Q 004826 459 IQFDNVHFSYLT------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID--G--QDICEVTL 528 (728)
Q Consensus 459 I~f~nVsF~Y~~------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id--G--~di~~i~~ 528 (728)
|+++||+++|++ .+++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+| | .++.+++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 789999999963 2479999999999999999999999999999999999999999999998 4 27766665
Q ss_pred HH---H-hcceEEEcCCCCCCc-ccHHHHHHcCC--CCCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccc
Q 004826 529 ES---L-RKSIGVVPQDTVLFN-DTIFHNIRYGR--LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGR 597 (728)
Q Consensus 529 ~~---l-R~~Ia~V~Qd~~LF~-gTIreNI~~g~--~~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~ 597 (728)
.. + ++.++||+|++.+|. -|++|||.+.. ...+ ++++.++++..++.+... +. ....
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~------~~----~~~~-- 149 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLW------HL----PPAT-- 149 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh------hC----Cccc--
Confidence 43 3 467999999998886 49999997631 1122 233444444444433221 11 2323
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA 676 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti 676 (728)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||++..+
T Consensus 150 -----------------LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~ 212 (224)
T TIGR02324 150 -----------------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVR 212 (224)
T ss_pred -----------------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999999998875 478999999999988
Q ss_pred h-hcCeEEEE
Q 004826 677 M-QCDEIIVL 685 (728)
Q Consensus 677 ~-~aD~IiVl 685 (728)
. .||+|+.+
T Consensus 213 ~~~~d~i~~~ 222 (224)
T TIGR02324 213 ELVADRVMDV 222 (224)
T ss_pred HHhcceeEec
Confidence 5 69999876
No 290
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.2e-40 Score=339.65 Aligned_cols=195 Identities=31% Similarity=0.545 Sum_probs=165.2
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCC---CcccHHHHHHcC
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL---FNDTIFHNIRYG 556 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~L---F~gTIreNI~~g 556 (728)
|+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++. ..|++++||||++.+ |+.|++|||.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 579999999999999999999999999999999999999998764 357889999999976 468999999875
Q ss_pred CC---------C-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHH
Q 004826 557 RL---------S-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALA 626 (728)
Q Consensus 557 ~~---------~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIA 626 (728)
.. . ..++++.++++..++.++... .++ . ||||||||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~----~-------------------LS~G~~qrv~la 125 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELADR-------PVG----E-------------------LSGGQRQRVLVA 125 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhhcC-------Chh----h-------------------CCHHHHHHHHHH
Confidence 21 1 123457777888777654422 221 2 999999999999
Q ss_pred HHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEEeCCEEEEEcChHHHhhccc
Q 004826 627 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 627 RALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVld~G~Ive~Gth~eLl~~~g 704 (728)
|||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+. .
T Consensus 126 ral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~-~ 203 (223)
T TIGR03771 126 RALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP-A 203 (223)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh-H
Confidence 99999999999999999999999999999999875 4789999999999875 59999999 7999999999999765 3
Q ss_pred hHHHHHH
Q 004826 705 RYAQLWG 711 (728)
Q Consensus 705 ~Y~~l~~ 711 (728)
.+.+++.
T Consensus 204 ~~~~~~~ 210 (223)
T TIGR03771 204 PWMTTFG 210 (223)
T ss_pred HHHHHhC
Confidence 5666654
No 291
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=6.4e-40 Score=384.50 Aligned_cols=213 Identities=30% Similarity=0.489 Sum_probs=183.5
Q ss_pred eEEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH---
Q 004826 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL--- 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l--- 531 (728)
-|+++||+++|++ .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||+++.+.+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 4899999999974 2479999999999999999999999999999999999999999999999999999987764
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 532 -RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 -R~~Ia~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
|+.++||+|++.+|. .|+.||+.++.. ..+ ++++.++++..++.+. +......
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-----------~~~~~~~-------- 144 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDR-----------VEYQPSQ-------- 144 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhh-----------hcCCccc--------
Confidence 678999999999996 599999987421 111 1223344444444433 3333334
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~I 682 (728)
|||||+||++|||||+++|++|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.++.||++
T Consensus 145 -----------LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i 213 (648)
T PRK10535 145 -----------LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERV 213 (648)
T ss_pred -----------CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999998875 479999999999999999999
Q ss_pred EEEeCCEEEEEcChHHHh
Q 004826 683 IVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl 700 (728)
++|++|+++++|+.+|..
T Consensus 214 ~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 214 IEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred EEEECCEEEeecCccccc
Confidence 999999999999999886
No 292
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-40 Score=379.34 Aligned_cols=218 Identities=24% Similarity=0.459 Sum_probs=175.9
Q ss_pred eEEEEEEEEEecC----CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC-CEe---CCCCC--
Q 004826 458 SIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID-GQD---ICEVT-- 527 (728)
Q Consensus 458 ~I~f~nVsF~Y~~----~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id-G~d---i~~i~-- 527 (728)
-|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999962 3579999999999999999999999999999999999999999999996 643 34333
Q ss_pred -HHHHhcceEEEcCCCCCCc-ccHHHHHHcCCC-CCC----HHHHHHHHHHhccHHH-HHhCCCcccchhhccccccchh
Q 004826 528 -LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL-SAT----EEEVYDAARRAAIHDT-IMNFPAKYSTVVGERGLKGRSL 599 (728)
Q Consensus 528 -~~~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~-~~s----deei~~A~~~a~l~~~-I~~LP~G~dT~vgE~G~~~~~~ 599 (728)
...+|++|+||||++.+|. .|++||+.++.. ... ++++.++++..++.+. +. +-.+..++ .
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~~~~~~~----~---- 427 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAE---EILDKYPD----E---- 427 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccch---hhhhCChh----h----
Confidence 2356778999999998887 499999976311 111 2234445555544320 00 00122222 2
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM 677 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~ 677 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||++..+.
T Consensus 428 ---------------LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~ 492 (520)
T TIGR03269 428 ---------------LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVL 492 (520)
T ss_pred ---------------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999988753 799999999999886
Q ss_pred h-cCeEEEEeCCEEEEEcChHHHhh
Q 004826 678 Q-CDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 678 ~-aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
. ||+|++|++|++++.|+++++.+
T Consensus 493 ~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 493 DVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 5 99999999999999999988764
No 293
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=7.1e-41 Score=390.80 Aligned_cols=216 Identities=31% Similarity=0.465 Sum_probs=182.7
Q ss_pred eEEEEEEEEEec--------CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCC
Q 004826 458 SIQFDNVHFSYL--------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEV 526 (728)
Q Consensus 458 ~I~f~nVsF~Y~--------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~i 526 (728)
+++|.++. +++ .++++|+|+|++|+|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46666666 553 2467999999999999999999999999999999999999885 899999999875
Q ss_pred CHHHHhcceEEEcCCCCCCc-ccHHHHHHcCCC-----CCCHHHHHHHHHHhccHHHHHh--CCCcccchhhccc--ccc
Q 004826 527 TLESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL-----SATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGERG--LKG 596 (728)
Q Consensus 527 ~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~-----~~sdeei~~A~~~a~l~~~I~~--LP~G~dT~vgE~G--~~~ 596 (728)
...+|+.++||+|++.+|. .||+|||.|+.. +.+.++. ...+++.++. |++..||.+|+.| ..
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~- 166 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKG- 166 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCC-
Confidence 4678999999999999995 599999988642 1233322 2233445554 4567899999854 34
Q ss_pred chhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCch-
Q 004826 597 RSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLT- 674 (728)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLs- 674 (728)
||||||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.+ ++|+|+++|+++
T Consensus 167 ------------------LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~ 228 (617)
T TIGR00955 167 ------------------LSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSS 228 (617)
T ss_pred ------------------cCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCH
Confidence 999999999999999999999999999999999999999999998764 799999999996
Q ss_pred -HHhhcCeEEEEeCCEEEEEcChHHHhh
Q 004826 675 -TAMQCDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 675 -ti~~aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
..+.+|+|++|++|+++++|+++|+.+
T Consensus 229 ~i~~~~D~i~ll~~G~~v~~G~~~~~~~ 256 (617)
T TIGR00955 229 ELFELFDKIILMAEGRVAYLGSPDQAVP 256 (617)
T ss_pred HHHHHhceEEEeeCCeEEEECCHHHHHH
Confidence 367899999999999999999999854
No 294
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=3.5e-40 Score=377.27 Aligned_cols=212 Identities=24% Similarity=0.451 Sum_probs=174.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHH-Hhcce
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLES-LRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~i~~~~-lR~~I 535 (728)
|+++||+++|+ ++++|+||||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+... .|+.|
T Consensus 2 l~i~~l~~~~~-~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFG-GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeC-CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 78999999996 46799999999999999999999999999999999999987 7999999999998877654 46789
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCCCC------CCHHHHHHHHHHhccHHHHHhC--CCcc-cchhhccccccchhHHHhhh
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGRLS------ATEEEVYDAARRAAIHDTIMNF--PAKY-STVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~~~------~sdeei~~A~~~a~l~~~I~~L--P~G~-dT~vgE~G~~~~~~~~~~~~ 605 (728)
+||||++.+|.. |++||+.++... .+.++..+ .+++.++.+ ++.+ +..++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~--------------- 140 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLRELQLDADNVTRPVG--------------- 140 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHcCCCCCcccCchh---------------
Confidence 999999988865 999999886421 12222211 112233332 1111 22222
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~Ii 683 (728)
.||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|+
T Consensus 141 --------~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~ 212 (500)
T TIGR02633 141 --------DYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTIC 212 (500)
T ss_pred --------hCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEE
Confidence 299999999999999999999999999999999999999999998764 47899999999998865 99999
Q ss_pred EEeCCEEEEEcChHHH
Q 004826 684 VLENGKVIEQGSHDDL 699 (728)
Q Consensus 684 Vld~G~Ive~Gth~eL 699 (728)
+|++|+|++.|+.+++
T Consensus 213 ~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 213 VIRDGQHVATKDMSTM 228 (500)
T ss_pred EEeCCeEeeecCcccC
Confidence 9999999999987654
No 295
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=2.1e-40 Score=331.35 Aligned_cols=178 Identities=31% Similarity=0.473 Sum_probs=150.1
Q ss_pred ecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--CCHHHHhcceEEEcCCC--C
Q 004826 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSIGVVPQDT--V 543 (728)
Q Consensus 468 Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~--i~~~~lR~~Ia~V~Qd~--~ 543 (728)
|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. .....+++.++||+|++ .
T Consensus 1 ~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 80 (190)
T TIGR01166 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ 80 (190)
T ss_pred CCCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc
Confidence 3345679999999999999999999999999999999999999999999999999852 23457788999999998 5
Q ss_pred CCcccHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 544 LFNDTIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 544 LF~gTIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
+|..|++|||.++.. ..++ +++.++++..++.++....| .. |||
T Consensus 81 ~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~-------------------LS~ 130 (190)
T TIGR01166 81 LFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT-----------HC-------------------LSG 130 (190)
T ss_pred cccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCCh-----------hh-------------------CCH
Confidence 888999999987521 2232 34566666667765544432 23 999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchH
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT 675 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLst 675 (728)
|||||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||++..
T Consensus 131 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 131 GEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999999999999999999999999998874 47899999999864
No 296
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.1e-40 Score=363.57 Aligned_cols=225 Identities=32% Similarity=0.522 Sum_probs=186.4
Q ss_pred eEEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC----CCEEEECCEeCCCCCHHH
Q 004826 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH----SGSIRIDGQDICEVTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~----~G~I~idG~di~~i~~~~ 530 (728)
-++++|++..|... .++++||||+|.|||++||||+|||||||+++.|+|+.++. +|+|.+||.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 48999999999732 26999999999999999999999999999999999999988 899999999999999876
Q ss_pred Hh----cceEEEcCCCC-CCcc--cHHHHH----HcCCCC---CCHHHHHHHHHHhccHHHHHh--CCCcccchhhcccc
Q 004826 531 LR----KSIGVVPQDTV-LFND--TIFHNI----RYGRLS---ATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGERGL 594 (728)
Q Consensus 531 lR----~~Ia~V~Qd~~-LF~g--TIreNI----~~g~~~---~sdeei~~A~~~a~l~~~I~~--LP~G~dT~vgE~G~ 594 (728)
+| +.|+||||||. .||- ||.+-| ....+. .-.++..+.++.+++.+-... .|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yP------------ 152 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYP------------ 152 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCC------------
Confidence 64 57999999986 6764 555554 333211 123456666677766554333 22
Q ss_pred ccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccC
Q 004826 595 KGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHR 672 (728)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHR 672 (728)
..||||||||+.||+||..||++||+||||.|||+.+.++|.+.|+++. .|.++|+|||.
T Consensus 153 ------------------heLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHD 214 (539)
T COG1123 153 ------------------HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHD 214 (539)
T ss_pred ------------------cccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCC
Confidence 2299999999999999999999999999999999999999999999876 68999999999
Q ss_pred chHHhh-cCeEEEEeCCEEEEEcChHHHhhcc-chH-HHHHHh
Q 004826 673 LTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA-GRY-AQLWGQ 712 (728)
Q Consensus 673 Lsti~~-aD~IiVld~G~Ive~Gth~eLl~~~-g~Y-~~l~~~ 712 (728)
+..+.. ||||+||++|+|||.|+.++++++. -.| +.|+..
T Consensus 215 l~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~~Ll~a 257 (539)
T COG1123 215 LGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAA 257 (539)
T ss_pred HHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccHHHHhh
Confidence 999866 9999999999999999999999763 345 444443
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=5.1e-40 Score=377.50 Aligned_cols=213 Identities=29% Similarity=0.460 Sum_probs=174.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC--CCCCCEEEEC-----------------
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHSGSIRID----------------- 519 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly--~p~~G~I~id----------------- 519 (728)
|+++|++++|+ ++++|+|+||+|++||++||+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFD-GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEEC-CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 57899999995 468999999999999999999999999999999999996 7999999997
Q ss_pred ------CEeCC-------CCC---HHHHhcceEEEcCC-CCCCc-ccHHHHHHcCCC--CCCH----HHHHHHHHHhccH
Q 004826 520 ------GQDIC-------EVT---LESLRKSIGVVPQD-TVLFN-DTIFHNIRYGRL--SATE----EEVYDAARRAAIH 575 (728)
Q Consensus 520 ------G~di~-------~i~---~~~lR~~Ia~V~Qd-~~LF~-gTIreNI~~g~~--~~sd----eei~~A~~~a~l~ 575 (728)
|.++. ..+ ...+|+.++||+|+ +.+|. .|++||+.++.. ..+. +++.++++..++.
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 33331 111 23467889999998 57776 599999987421 1222 3344555555554
Q ss_pred HHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHH
Q 004826 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN 655 (728)
Q Consensus 576 ~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~ 655 (728)
+...+. -. +||||||||++|||||+.+|++|||||||++||+++.+.+.+
T Consensus 160 ~~~~~~-----------~~-------------------~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 209 (520)
T TIGR03269 160 HRITHI-----------AR-------------------DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHN 209 (520)
T ss_pred hhhhcC-----------cc-------------------cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHH
Confidence 433221 12 299999999999999999999999999999999999999999
Q ss_pred HHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 656 ALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 656 ~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
.|+++. .++|+|+|||+++.+.. ||+|++|++|+|++.|+++++...
T Consensus 210 ~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 210 ALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 998874 37999999999999865 999999999999999999988653
No 298
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2e-39 Score=339.80 Aligned_cols=219 Identities=32% Similarity=0.579 Sum_probs=183.9
Q ss_pred eEEEEEEEEEecCC----------ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC
Q 004826 458 SIQFDNVHFSYLTE----------RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT 527 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~----------~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~ 527 (728)
-++.+||...|+-. -.+.++|||+.++||+++|||+||||||||-..|+||.++. |+|.++|.||..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 58899999999721 24899999999999999999999999999999999999766 99999999999998
Q ss_pred HHH---HhcceEEEcCCCC-CCc--ccHHHHHHcC----CCCCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccc
Q 004826 528 LES---LRKSIGVVPQDTV-LFN--DTIFHNIRYG----RLSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593 (728)
Q Consensus 528 ~~~---lR~~Ia~V~Qd~~-LF~--gTIreNI~~g----~~~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G 593 (728)
.+. +|+.+-+|+|||+ =+| .||.+=|.=| .|..++ +.+.+|++.+|++.-..
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r-------------- 420 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR-------------- 420 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh--------------
Confidence 665 7899999999997 232 3666665444 455554 44677777777765432
Q ss_pred cccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEecc
Q 004826 594 LKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAH 671 (728)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaH 671 (728)
+|-|. .+|||||||||||||++-+|++++|||||||||-.-.++|.+-|+++. .+-+-++|+|
T Consensus 421 -------------~RYPh--EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISH 485 (534)
T COG4172 421 -------------NRYPH--EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485 (534)
T ss_pred -------------hcCCc--ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 22232 299999999999999999999999999999999999999999998764 5689999999
Q ss_pred CchHHhh-cCeEEEEeCCEEEEEcChHHHhhcc-chH
Q 004826 672 RLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTKA-GRY 706 (728)
Q Consensus 672 RLsti~~-aD~IiVld~G~Ive~Gth~eLl~~~-g~Y 706 (728)
+|+.++. ||+++||.+|+|||+|+-+++.++. -.|
T Consensus 486 DL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~Y 522 (534)
T COG4172 486 DLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEY 522 (534)
T ss_pred cHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHH
Confidence 9999987 9999999999999999999998763 445
No 299
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-40 Score=335.24 Aligned_cols=195 Identities=33% Similarity=0.568 Sum_probs=168.5
Q ss_pred eEEEEEEEEEecCC--------ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH
Q 004826 458 SIQFDNVHFSYLTE--------RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~--------~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~ 529 (728)
-++.+|++..|+.. ..+++||||+|++||+++|||+|||||||+.++|+||++|++|+|+++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 37899999999732 26899999999999999999999999999999999999999999999999988777
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHH-HHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 530 SLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~-~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
.+-..+++.+.++.+++.+ +..+.|+
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPh------------------------- 108 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLYRYPH------------------------- 108 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCc-------------------------
Confidence 1223566888888888765 4444442
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVL 685 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVl 685 (728)
.|||||||||+|||||.-+|+++|+||||||||...+++|.+-|..+. .+-|.++|||.++.+++ ||||.||
T Consensus 109 -----elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VM 183 (268)
T COG4608 109 -----ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVM 183 (268)
T ss_pred -----ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEE
Confidence 299999999999999999999999999999999999999999987764 47999999999999998 9999999
Q ss_pred eCCEEEEEcChHHHhhc-cchH-HHHHHh
Q 004826 686 ENGKVIEQGSHDDLLTK-AGRY-AQLWGQ 712 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~-~g~Y-~~l~~~ 712 (728)
..|+|||.|+-+|+.+. .-.| +.|+..
T Consensus 184 y~G~iVE~g~~~~~~~~p~HpYTk~Ll~a 212 (268)
T COG4608 184 YLGKIVEIGPTEEVFSNPLHPYTKALLSA 212 (268)
T ss_pred ecCceeEecCHHHHhhCCCCHHHHHHHHh
Confidence 99999999999999875 3446 444443
No 300
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=7.5e-40 Score=328.82 Aligned_cols=188 Identities=19% Similarity=0.298 Sum_probs=161.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|++ +.++ ++||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ++.++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYI 75 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEec
Confidence 789999999964 4555 599999999999999999999999999999999999999999999987653 3569999
Q ss_pred cCCCC-CCcccHHHHHHcCCCCC-CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 539 PQDTV-LFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 539 ~Qd~~-LF~gTIreNI~~g~~~~-sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
+|++. +|+.|++|||.++.+.. .++++.++++..++.++..+ .+.. ||
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~-------------------LS 125 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDE-----------KCYS-------------------LS 125 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhcc-----------Chhh-------------------CC
Confidence 99875 47889999998865322 35567777788777665432 2333 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH-cCCCeEEEeccCchHHhhcCeE
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRLsti~~aD~I 682 (728)
||||||++||||++++|++|||||||++||+.+.+.+.+.|+.. .+++|+|+|||+++.++.||-|
T Consensus 126 ~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 99999999999999999999999999999999999999998743 4679999999999999999976
No 301
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=8.7e-40 Score=335.47 Aligned_cols=194 Identities=27% Similarity=0.332 Sum_probs=155.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
+..+|++.+|. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... ....
T Consensus 23 l~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~--- 93 (224)
T cd03220 23 LGILGRKGEVG-EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGG--- 93 (224)
T ss_pred hhhhhhhhhcC-CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccc---
Confidence 56677777775 46799999999999999999999999999999999999999999999999886421 1111
Q ss_pred cCCCCCCcccHHHHHHcCCC--CCCHHH----HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 539 PQDTVLFNDTIFHNIRYGRL--SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~--~~sdee----i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
.+..+.|++||+.++.. ..+.++ +.++++..++ ++..++.++ .
T Consensus 94 ---~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~----~----------------- 142 (224)
T cd03220 94 ---GFNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSEL-------GDFIDLPVK----T----------------- 142 (224)
T ss_pred ---cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-------hhhhhCChh----h-----------------
Confidence 12245799999987632 123332 3333333333 333344432 2
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEEeCCEE
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVLENGKV 690 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVld~G~I 690 (728)
||||||||++||||++++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++
T Consensus 143 --LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 143 --YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999998864 4589999999999876 5999999999999
Q ss_pred EEEc
Q 004826 691 IEQG 694 (728)
Q Consensus 691 ve~G 694 (728)
++.|
T Consensus 221 ~~~g 224 (224)
T cd03220 221 RFDG 224 (224)
T ss_pred EecC
Confidence 9876
No 302
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.7e-40 Score=309.56 Aligned_cols=194 Identities=34% Similarity=0.519 Sum_probs=169.6
Q ss_pred CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccH
Q 004826 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (728)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTI 549 (728)
.+.++|+++||++.+||.+||.||||||||||+|.++-|..|++|.+++.|.|++.++++.+|++|+||.|.|-||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcC----CCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHH
Q 004826 550 FHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVAL 625 (728)
Q Consensus 550 reNI~~g----~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaI 625 (728)
.||+-|- +...+.+.-.+-++.+++.+.+ +..+-.+ ||||||||+||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~----------L~k~it~-------------------lSGGE~QriAl 144 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSI----------LTKNITE-------------------LSGGEKQRIAL 144 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhh----------hcchhhh-------------------ccchHHHHHHH
Confidence 9999764 2223444445555556555444 2233333 99999999999
Q ss_pred HHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH-HhhcCeEEEEeCCEEEE
Q 004826 626 ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLENGKVIE 692 (728)
Q Consensus 626 ARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst-i~~aD~IiVld~G~Ive 692 (728)
+|-|---|+||+|||+|||||+.+.+.|.+.|-++. +++.++-|||.-.. +++||+++-+..|++-|
T Consensus 145 iR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 145 IRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred HHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999999999999999999999999999999988765 57899999999987 99999999999998743
No 303
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-39 Score=359.14 Aligned_cols=211 Identities=26% Similarity=0.375 Sum_probs=174.3
Q ss_pred eEEEEEEEEEecCC--ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
.++++|++|+|++. +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999753 5799999999999999999999999999999999999999999999999752
Q ss_pred EEEcCCCCCCc-ccHHHHHHcCC--CCCCHHH----HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLFN-DTIFHNIRYGR--LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF~-gTIreNI~~g~--~~~sdee----i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
++.+.+.++. .|++|||.++. +..++++ +.++++..++.+++... ...
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~-----------~~~------------- 143 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQP-----------VKT------------- 143 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCC-----------ccc-------------
Confidence 1223333433 59999998742 2233333 34556666666554432 223
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. ||+|++|+
T Consensus 144 ------LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~ 217 (549)
T PRK13545 144 ------YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLH 217 (549)
T ss_pred ------CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999998864 47999999999998865 99999999
Q ss_pred CCEEEEEcChHHHhhccchHHHHHH
Q 004826 687 NGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
+|++++.|+++++...-..|.+.|.
T Consensus 218 ~GkIv~~G~~~el~~~~~~~~~~~~ 242 (549)
T PRK13545 218 YGQVKEYGDIKEVVDHYDEFLKKYN 242 (549)
T ss_pred CCEEEEECCHHHHHhhHHHHHHHHh
Confidence 9999999999999877556655554
No 304
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=3.8e-39 Score=338.21 Aligned_cols=198 Identities=26% Similarity=0.385 Sum_probs=164.7
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc-ccHH
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIF 550 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~-gTIr 550 (728)
+++|+|+||+|+|||++||+|+||||||||+++|+|+++|++|+|.+||. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 46999999999999999999999999999999999999999999999994 567888887764 6999
Q ss_pred HHHHcCC--CCCCHHHHHH----HHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHH
Q 004826 551 HNIRYGR--LSATEEEVYD----AARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVA 624 (728)
Q Consensus 551 eNI~~g~--~~~sdeei~~----A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIa 624 (728)
|||.++. ...+.++..+ +++..++.+++. ..... ||||||||++
T Consensus 104 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~-------------------LS~Gq~qrv~ 153 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIY-----------QPVKK-------------------YSSGMRAKLG 153 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhc-----------CCccc-------------------CCHHHHHHHH
Confidence 9998642 1234444433 334444443332 22333 9999999999
Q ss_pred HHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 625 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 625 IARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
||||++.+|+||||||||++||+.+.+.+.+.|.++. .++|+|+|||++..+.. ||+|++|++|+|++.|++++++++
T Consensus 154 Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (264)
T PRK13546 154 FSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK 233 (264)
T ss_pred HHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHH
Confidence 9999999999999999999999999999999998764 47999999999998865 999999999999999999999987
Q ss_pred cchHHHHHHh
Q 004826 703 AGRYAQLWGQ 712 (728)
Q Consensus 703 ~g~Y~~l~~~ 712 (728)
.+.|.+.+..
T Consensus 234 ~~~~~~~~~~ 243 (264)
T PRK13546 234 YEAFLNDFKK 243 (264)
T ss_pred hHHHHHHHHh
Confidence 6666555543
No 305
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-40 Score=375.31 Aligned_cols=215 Identities=25% Similarity=0.406 Sum_probs=174.4
Q ss_pred eEEEEEEEEEec--CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-CCCCEEEECCEeCCCCCH-HHHhc
Q 004826 458 SIQFDNVHFSYL--TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTL-ESLRK 533 (728)
Q Consensus 458 ~I~f~nVsF~Y~--~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-p~~G~I~idG~di~~i~~-~~lR~ 533 (728)
-|+++||+++|+ +++++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+|+
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 499999999995 24579999999999999999999999999999999999999 599999999999876543 45678
Q ss_pred ceEEEcCCC---CCC-cccHHHHHHcCCC-C------CCHHHHHHHHHHhccHHHHHhCCC---cccchhhccccccchh
Q 004826 534 SIGVVPQDT---VLF-NDTIFHNIRYGRL-S------ATEEEVYDAARRAAIHDTIMNFPA---KYSTVVGERGLKGRSL 599 (728)
Q Consensus 534 ~Ia~V~Qd~---~LF-~gTIreNI~~g~~-~------~sdeei~~A~~~a~l~~~I~~LP~---G~dT~vgE~G~~~~~~ 599 (728)
.|+||+|++ .+| +.|+.||+.++.. . .+.++. ...+++.++.+.- -.+..++ .
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~----~---- 405 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRLKVKTASPELAIA----R---- 405 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhcCccCCCcccccc----c----
Confidence 899999996 355 4699999987521 0 111111 1122334444311 1222222 2
Q ss_pred HHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh
Q 004826 600 LYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ 678 (728)
Q Consensus 600 ~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~ 678 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+..
T Consensus 406 ---------------LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~ 470 (506)
T PRK13549 406 ---------------LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLG 470 (506)
T ss_pred ---------------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 99999999999999999999999999999999999999999988764 47999999999998765
Q ss_pred -cCeEEEEeCCEEEEEcChHHHh
Q 004826 679 -CDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 679 -aD~IiVld~G~Ive~Gth~eLl 700 (728)
||++++|++|+|+..|+.+++.
T Consensus 471 ~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 471 LSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred hCCEEEEEECCEEEEEeccccCC
Confidence 9999999999999999887764
No 306
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.6e-40 Score=328.16 Aligned_cols=219 Identities=26% Similarity=0.441 Sum_probs=181.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH-hcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~Ia~ 537 (728)
.+.+|++-+|. .-.+++||||++++||.+||+||+||||||++|+|.|+|+|++|+|.++|.||..+++... |.-|+-
T Consensus 5 L~v~~l~k~FG-Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 5 LEVRGLSKRFG-GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeeccceeecC-CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 56889999885 4579999999999999999999999999999999999999999999999999999997664 557999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCCC-----------CHHHHHHHHHHh-ccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLSA-----------TEEEVYDAARRA-AIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~-----------sdeei~~A~~~a-~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
-+|.+.+|.+ |+.||+..+.... ...+-.++.+.| .+-+++ .|.+-.|++ ..+
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-gL~~~a~~~----A~~--------- 149 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-GLGELADRP----AGN--------- 149 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-CCchhhcch----hhc---------
Confidence 9999999976 9999998873211 101111222222 222222 222223333 333
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCe
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~ 681 (728)
||+||+.|+.|||||..+|++|+||||.+++.++.-..+.+.|+++.+ +.|+++|-|+++.++. |||
T Consensus 150 ----------LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dr 219 (250)
T COG0411 150 ----------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADR 219 (250)
T ss_pred ----------CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccE
Confidence 999999999999999999999999999999999999999999999875 4999999999999877 999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|+||+.|+++.+|+++|..+.
T Consensus 220 i~Vl~~G~~IAeG~P~eV~~d 240 (250)
T COG0411 220 IVVLNYGEVIAEGTPEEVRNN 240 (250)
T ss_pred EEeccCCcCcccCCHHHHhcC
Confidence 999999999999999998765
No 307
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=7.2e-36 Score=325.55 Aligned_cols=343 Identities=20% Similarity=0.247 Sum_probs=247.5
Q ss_pred HHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH
Q 004826 314 ADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAM------VLCSH 387 (728)
Q Consensus 314 ~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l------~~g~~ 387 (728)
..++......+...|.+.|--|+.++.|....+...+...+...+.-.+.-++..+.+++--...++.. ++.++
T Consensus 260 lEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h 339 (659)
T KOG0060|consen 260 LEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGH 339 (659)
T ss_pred hhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeeccc
Confidence 334444555667778999999999988877776666655555444333333333333332111110000 11111
Q ss_pred HHhcCCcCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-------------C-----
Q 004826 388 GILSGEMTVGDLVMVNGL----LFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQ-------------D----- 445 (728)
Q Consensus 388 ~v~~g~lt~G~l~a~~~~----~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~-------------~----- 445 (728)
..+.++..++...+.. +..+...+..+.....++.+-.+-..|+.++++.-.+.. .
T Consensus 340 --~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~ 417 (659)
T KOG0060|consen 340 --VYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWG 417 (659)
T ss_pred --ccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhc
Confidence 3457787777655433 233444555555556666666677788877764321100 0
Q ss_pred ---CCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCE
Q 004826 446 ---RDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ 521 (728)
Q Consensus 446 ---~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~ 521 (728)
.++.....+....|+|++|+++=|+ +..+.+|+||+|+.|+.+-|.||||||||+|++.|.|+|+..+|.+.--..
T Consensus 418 l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~ 497 (659)
T KOG0060|consen 418 LSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD 497 (659)
T ss_pred cCCCCCCcccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc
Confidence 0000111223357999999999886 445667799999999999999999999999999999999999999975332
Q ss_pred eCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCC-------CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhcccc
Q 004826 522 DICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (728)
Q Consensus 522 di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~-------~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~ 594 (728)
.-. +.+=||||.|+.=.||+||-+.|-. ..++|++|.+.++.+++.+.+ ...+|+|+++--+
T Consensus 498 ~~~--------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~-~r~ggld~~~~~d-- 566 (659)
T KOG0060|consen 498 GGP--------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLL-EREGGLDQQVDWD-- 566 (659)
T ss_pred CCC--------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHH-HHhCCCCchhhcc--
Confidence 111 4588999999999999999998862 248999999999999998754 5578999876543
Q ss_pred ccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch
Q 004826 595 KGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674 (728)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs 674 (728)
|-.. ||+||+||+|+||-+|.+|++-||||+|||+|.+.|..+.+.+++ .|-|.|.|.||-|
T Consensus 567 --------------W~dv--LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkS 628 (659)
T KOG0060|consen 567 --------------WMDV--LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKS 628 (659)
T ss_pred --------------HHhh--cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHH
Confidence 2222 999999999999999999999999999999999999999999988 5899999999999
Q ss_pred HHhhcCeEEEEeC
Q 004826 675 TAMQCDEIIVLEN 687 (728)
Q Consensus 675 ti~~aD~IiVld~ 687 (728)
.-+.-|.++-|+.
T Consensus 629 L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 629 LWKFHDYVLRMDG 641 (659)
T ss_pred HHhhhhEEEEecC
Confidence 9999999999986
No 308
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-39 Score=370.45 Aligned_cols=209 Identities=24% Similarity=0.415 Sum_probs=170.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia 536 (728)
-|+++|+++.|. .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.|+
T Consensus 265 ~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 599999999863 38999999999999999999999999999999999999999999999999876554 45778999
Q ss_pred EEcCCC---CCCc-ccHHHHHHcCCCC-----------CCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccc
Q 004826 537 VVPQDT---VLFN-DTIFHNIRYGRLS-----------ATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGR 597 (728)
Q Consensus 537 ~V~Qd~---~LF~-gTIreNI~~g~~~-----------~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~ 597 (728)
||||++ .+|. -|++||+.++... .+.+ ++.++++..++. ++-.++.+++
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~------ 409 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQNITE------ 409 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccCcccc------
Confidence 999984 5775 5999999876320 0111 122233322221 0223333332
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA 676 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti 676 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||++..+
T Consensus 410 -----------------LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~ 472 (510)
T PRK09700 410 -----------------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEI 472 (510)
T ss_pred -----------------CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence 99999999999999999999999999999999999999999998764 479999999999876
Q ss_pred h-hcCeEEEEeCCEEEEEcChHH
Q 004826 677 M-QCDEIIVLENGKVIEQGSHDD 698 (728)
Q Consensus 677 ~-~aD~IiVld~G~Ive~Gth~e 698 (728)
. .||+|++|++|+|++.|+..+
T Consensus 473 ~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 473 ITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HhhCCEEEEEECCEEEEEecCcc
Confidence 5 599999999999999887633
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=8.1e-39 Score=400.70 Aligned_cols=214 Identities=24% Similarity=0.402 Sum_probs=186.3
Q ss_pred eEEEEEEEEEec-CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
.|+++||++.|+ +++++|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.++|.|+.. +...+|++||
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG 1006 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLG 1006 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEE
Confidence 699999999996 45789999999999999999999999999999999999999999999999999975 5677899999
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
||||++.+|.. |++|||.++.. ..+ ++++.+.++..++.+.. |. .-..
T Consensus 1007 ~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~-------~~----~~~~-------------- 1061 (2272)
T TIGR01257 1007 MCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKR-------NE----EAQD-------------- 1061 (2272)
T ss_pred EEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-------cC----Chhh--------------
Confidence 99999999974 99999987521 122 23455555555554332 22 2222
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCC
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENG 688 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G 688 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+++|+|++||.++.+.. ||||++|++|
T Consensus 1062 -----LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~G 1136 (2272)
T TIGR01257 1062 -----LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQG 1136 (2272)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998889999999999998864 9999999999
Q ss_pred EEEEEcChHHHhhc
Q 004826 689 KVIEQGSHDDLLTK 702 (728)
Q Consensus 689 ~Ive~Gth~eLl~~ 702 (728)
++++.|+.++|.++
T Consensus 1137 kL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1137 RLYCSGTPLFLKNC 1150 (2272)
T ss_pred EEEEecCHHHHHHh
Confidence 99999999999875
No 310
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=350.97 Aligned_cols=209 Identities=30% Similarity=0.466 Sum_probs=180.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia 536 (728)
-++++|++.+|++ .++|+||||++.|||.+|++|.+|+|||||+|.|+|.|+|++|+|++||.+..-.++.+ ...-|+
T Consensus 8 ll~~~~i~K~Fgg-V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 8 LLELRGISKSFGG-VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred eeeeecceEEcCC-ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 4889999999974 57999999999999999999999999999999999999999999999999999777555 555799
Q ss_pred EEcCCCCCCc-ccHHHHHHcCCCCC------CHHHHHHHHHHhccHHHHHhC--CCcccchhhccccccchhHHHhhhhc
Q 004826 537 VVPQDTVLFN-DTIFHNIRYGRLSA------TEEEVYDAARRAAIHDTIMNF--PAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~~~------sdeei~~A~~~a~l~~~I~~L--P~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
+|.||..|+. -||.|||-+|++.. +..++.+.++.+ +..+ +...|++|++
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~-----l~~lg~~~~~~~~v~~---------------- 145 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAREL-----LARLGLDIDPDTLVGD---------------- 145 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHH-----HHHcCCCCChhhhhhh----------------
Confidence 9999999995 59999999997532 334444444333 2222 1237777775
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVl 685 (728)
||+||||.++||||+..+++|||||||||+|+...-+.+++.++++. +|.++|+|||||+.+.. ||||.||
T Consensus 146 -------LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -------LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVL 218 (500)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEE
Confidence 99999999999999999999999999999999999999999999886 68999999999998765 9999999
Q ss_pred eCCEEEEEcC
Q 004826 686 ENGKVIEQGS 695 (728)
Q Consensus 686 d~G~Ive~Gt 695 (728)
.+|+.|..++
T Consensus 219 RDG~~v~~~~ 228 (500)
T COG1129 219 RDGRVVGTRP 228 (500)
T ss_pred eCCEEeeecc
Confidence 9999998776
No 311
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.9e-38 Score=366.88 Aligned_cols=208 Identities=26% Similarity=0.396 Sum_probs=166.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|++++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++ +..|+|
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGY 74 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 589999999997357899999999999999999999999999999999999999999999975 247999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCCC----------------CH----------HHHHHHHHHhc-------cHHHHHhC--
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLSA----------------TE----------EEVYDAARRAA-------IHDTIMNF-- 581 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~----------------sd----------eei~~A~~~a~-------l~~~I~~L-- 581 (728)
|||++.+|+. |++||+.++.... .+ .++.++++.++ +.+.++.+
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 9999999865 9999998752100 00 11122222111 11112221
Q ss_pred CCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc
Q 004826 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 661 (728)
Q Consensus 582 P~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 661 (728)
+. .+..+ .+||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.
T Consensus 155 ~~-~~~~~-----------------------~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~ 210 (556)
T PRK11819 155 PP-WDAKV-----------------------TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP 210 (556)
T ss_pred Cc-ccCch-----------------------hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC
Confidence 11 12222 2399999999999999999999999999999999999999999998863
Q ss_pred CCCeEEEeccCchHHhh-cCeEEEEeCCEEE-EEcChHHHhhc
Q 004826 662 NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI-EQGSHDDLLTK 702 (728)
Q Consensus 662 ~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv-e~Gth~eLl~~ 702 (728)
.|+|+|||++..+.. ||+|++|++|+++ ..|++++..+.
T Consensus 211 --~tviiisHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 251 (556)
T PRK11819 211 --GTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQ 251 (556)
T ss_pred --CeEEEEeCCHHHHHhhcCeEEEEeCCEEEEecCCHHHHHHH
Confidence 599999999998876 8999999999986 78999887643
No 312
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.8e-39 Score=401.50 Aligned_cols=210 Identities=25% Similarity=0.423 Sum_probs=181.1
Q ss_pred eEEEEEEEEEec---CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC---CCCCEEEECCEeCCCCCHHHH
Q 004826 458 SIQFDNVHFSYL---TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD---THSGSIRIDGQDICEVTLESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~---~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~---p~~G~I~idG~di~~i~~~~l 531 (728)
.++++||+++|+ +++++|+|||++|+|||++||+||||||||||+++|+|+.+ |++|+|++||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 479999999995 24689999999999999999999999999999999999998 78999999999985 257
Q ss_pred hcceEEEcCCCC-CCcccHHHHHHcCC----C-CCCHHH----HHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 532 RKSIGVVPQDTV-LFNDTIFHNIRYGR----L-SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 532 R~~Ia~V~Qd~~-LF~gTIreNI~~g~----~-~~sdee----i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
|+.+|||+|++. +++.|++|||.++. | +.++++ +.++++..++ .+-.|+.+|+.|.+
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~------ 901 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEG------ 901 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCC------
Confidence 899999999865 56789999998752 2 234433 3445554444 34579999988877
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCC-EEEEeCcCcCCCHHHHHHHHHHHHHH-cCCCeEEEeccCchHH--h
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPP-ILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTA--M 677 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~-ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRLsti--~ 677 (728)
||||||||++|||||+.+|+ ||+||||||+||+.+...|++.|+++ .+|+|+|+++|+++.. +
T Consensus 902 -------------LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~ 968 (1394)
T TIGR00956 902 -------------LNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFE 968 (1394)
T ss_pred -------------CCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHH
Confidence 99999999999999999997 99999999999999999999999987 4689999999999973 6
Q ss_pred hcCeEEEEeCC-EEEEEcChH
Q 004826 678 QCDEIIVLENG-KVIEQGSHD 697 (728)
Q Consensus 678 ~aD~IiVld~G-~Ive~Gth~ 697 (728)
.+|+|++|++| ++++.|+.+
T Consensus 969 ~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 969 EFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred hcCEEEEEcCCCEEEEECCcc
Confidence 79999999997 999999864
No 313
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-38 Score=307.94 Aligned_cols=213 Identities=34% Similarity=0.517 Sum_probs=185.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+.+|+|++-. ++.+|+++||+++|||.+||+||+|||||||+|.|+|...|++|++.++|+++.+++..++-++-++.
T Consensus 2 i~a~nls~~~~-Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLA-GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEee-cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 78899998764 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CcccHHHHHHcCC-CC-----CCHHH--HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 539 PQDTVL-FNDTIFHNIRYGR-LS-----ATEEE--VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 539 ~Qd~~L-F~gTIreNI~~g~-~~-----~sdee--i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
||+..| |.-|++|-+.||. |. +.+++ ..+|+..+++..|-.+ .|..
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R-------------------~y~~------ 135 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGR-------------------DYRT------ 135 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhcc-------------------chhh------
Confidence 999987 9999999999996 32 22344 4566666666554322 1222
Q ss_pred CCCCCCChhHHHHHHHHHHhccC------CCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchH-HhhcCe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKA------PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT-AMQCDE 681 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~------p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLst-i~~aD~ 681 (728)
|||||+||+.+||.|.+- +++|+|||||||||..-...+++..+++. ++..|++|=|+|+. .+.|||
T Consensus 136 -----LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDr 210 (259)
T COG4559 136 -----LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADR 210 (259)
T ss_pred -----cCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhhe
Confidence 999999999999999753 35899999999999999999999988875 56999999999996 577999
Q ss_pred EEEEeCCEEEEEcChHHHhhc
Q 004826 682 IIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~ 702 (728)
|++|.+|||+..|++++.+..
T Consensus 211 ivll~~Grv~a~g~p~~vlt~ 231 (259)
T COG4559 211 IVLLHQGRVIASGSPQDVLTD 231 (259)
T ss_pred eeeeeCCeEeecCCHHHhcCH
Confidence 999999999999999998854
No 314
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.9e-38 Score=365.18 Aligned_cols=208 Identities=27% Similarity=0.394 Sum_probs=170.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|++++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++ +..|+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 489999999997456899999999999999999999999999999999999999999999985 247999
Q ss_pred EcCCCCCCc-ccHHHHHHcCCCC-----------------CCH---------HHHHHHHHHhccHH-------HHHhC--
Q 004826 538 VPQDTVLFN-DTIFHNIRYGRLS-----------------ATE---------EEVYDAARRAAIHD-------TIMNF-- 581 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~~~-----------------~sd---------eei~~A~~~a~l~~-------~I~~L-- 581 (728)
|+|++.+|. .|++|||.++... ..+ +++.++++.++.++ .++.+
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 999999986 5999999875210 011 23445555555432 22221
Q ss_pred CCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc
Q 004826 582 PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 661 (728)
Q Consensus 582 P~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 661 (728)
+. .+..+ .+||||||||++|||||+.+|++|||||||++||+++.+.+.+.|++.
T Consensus 153 ~~-~~~~~-----------------------~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~- 207 (552)
T TIGR03719 153 PP-WDADV-----------------------TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY- 207 (552)
T ss_pred Cc-ccCch-----------------------hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-
Confidence 11 12222 239999999999999999999999999999999999999999999875
Q ss_pred CCCeEEEeccCchHHhh-cCeEEEEeCCEEE-EEcChHHHhhc
Q 004826 662 NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI-EQGSHDDLLTK 702 (728)
Q Consensus 662 ~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv-e~Gth~eLl~~ 702 (728)
++|+|+|||+++.+.. ||+|++|++|+++ ..|++++.++.
T Consensus 208 -~~tvIiisHd~~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~~ 249 (552)
T TIGR03719 208 -PGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQ 249 (552)
T ss_pred -CCeEEEEeCCHHHHHhhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 3699999999999876 8999999999976 67999887653
No 315
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=6.8e-39 Score=334.44 Aligned_cols=201 Identities=22% Similarity=0.282 Sum_probs=160.8
Q ss_pred EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEE-----------ECCEeCCCCCHHH
Q 004826 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLES 530 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~-----------idG~di~~i~~~~ 530 (728)
.||+|+|++.+++|+|+|+ ++|||++||+||||||||||+++|+|+++|++|+|. +||+++.+...+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999755579999995 999999999999999999999999999999999996 8899988765444
Q ss_pred Hhc--ceEEEcCCCCCCcccHHHHHHcCCCCC-CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 531 LRK--SIGVVPQDTVLFNDTIFHNIRYGRLSA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 531 lR~--~Ia~V~Qd~~LF~gTIreNI~~g~~~~-sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
.|. .+++++|++.++..++.+|+...-... .++++.++++..++.+. +......
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~------------ 139 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV-----------LDRNIDQ------------ 139 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchh-----------hcCChhh------------
Confidence 443 478998888777655555554431111 23445566666555433 2233334
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD~IiVl 685 (728)
||||||||++||||++++|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.++. ||+|++|
T Consensus 140 -------LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l 212 (255)
T cd03236 140 -------LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL 212 (255)
T ss_pred -------CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999988754 7999999999999885 9999999
Q ss_pred eCCEEEEEc
Q 004826 686 ENGKVIEQG 694 (728)
Q Consensus 686 d~G~Ive~G 694 (728)
+ |++++.|
T Consensus 213 ~-~~~~~~~ 220 (255)
T cd03236 213 Y-GEPGAYG 220 (255)
T ss_pred C-CCCCcce
Confidence 4 6676544
No 316
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.1e-38 Score=322.64 Aligned_cols=191 Identities=21% Similarity=0.261 Sum_probs=158.4
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEE-ECCEeCCCCCHHHHhcceEEEcCCCCCCcc-cHHH
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-IDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFH 551 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~-idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIre 551 (728)
+|+||||+|++||++||+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 79999999999999999999999999999999999999999997 887533 13467888875 9999
Q ss_pred HHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh
Q 004826 552 NIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF 629 (728)
Q Consensus 552 NI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL 629 (728)
||.+... ..+.+++.+.+. ....|++.+++.+++ ||||||||++||||+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~-----------------------lS~G~~qrv~la~al 119 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY------QLTQLEQCYTDRVSE-----------------------YSVTMKTHLAFAINL 119 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH------HHhChhHHhhchHhh-----------------------cCHHHHHHHHHHHHH
Confidence 9987521 234444433221 123455566666643 999999999999999
Q ss_pred ccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcCeEEEEeCCEEEEEcChHHHhhccchH
Q 004826 630 LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAGRY 706 (728)
Q Consensus 630 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD~IiVld~G~Ive~Gth~eLl~~~g~Y 706 (728)
+.+|+++||||||+++|+.+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-+++.+..+.|
T Consensus 120 ~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 197 (213)
T PRK15177 120 LLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQY 197 (213)
T ss_pred hcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHH
Confidence 999999999999999999999999998876667789999999999986 59999999999999999988887554444
No 317
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-38 Score=364.26 Aligned_cols=212 Identities=25% Similarity=0.420 Sum_probs=171.3
Q ss_pred eEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCCCCH-HHHhc
Q 004826 458 SIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTL-ESLRK 533 (728)
Q Consensus 458 ~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~i~~-~~lR~ 533 (728)
-|+++|++++|+. ++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 4999999999952 35799999999999999999999999999999999999996 89999999999876543 56788
Q ss_pred ceEEEcCCC---CCCc-ccHHHHHHcCCCC-------CCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccch
Q 004826 534 SIGVVPQDT---VLFN-DTIFHNIRYGRLS-------ATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRS 598 (728)
Q Consensus 534 ~Ia~V~Qd~---~LF~-gTIreNI~~g~~~-------~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~ 598 (728)
+|+||||++ .+|. .|++||+.++... ... +++.++++..++.+ .-.+..++ .
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~----~--- 403 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKT------ASPFLPIG----R--- 403 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccC------CCccCccc----c---
Confidence 999999996 3665 5999999875310 111 12233333332210 01233332 2
Q ss_pred hHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh
Q 004826 599 LLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM 677 (728)
Q Consensus 599 ~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~ 677 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. .+.|+|+|||+++.+.
T Consensus 404 ----------------LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~ 467 (500)
T TIGR02633 404 ----------------LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVL 467 (500)
T ss_pred ----------------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999888764 4799999999999886
Q ss_pred h-cCeEEEEeCCEEEEEcChHH
Q 004826 678 Q-CDEIIVLENGKVIEQGSHDD 698 (728)
Q Consensus 678 ~-aD~IiVld~G~Ive~Gth~e 698 (728)
. ||+|++|++|+|+..++-++
T Consensus 468 ~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 468 GLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HhCCEEEEEECCEEEEEEcccc
Confidence 5 99999999999998776443
No 318
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3e-38 Score=328.21 Aligned_cols=194 Identities=23% Similarity=0.339 Sum_probs=159.2
Q ss_pred EEecCCceeeeeeeEEEe-----CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcC
Q 004826 466 FSYLTERKILDGVSFVVP-----AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (728)
Q Consensus 466 F~Y~~~~~vL~~isl~I~-----~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q 540 (728)
|+|++..+.++|++|+++ +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|+||
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q 68 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQ 68 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecc
Confidence 678876778999999997 68999999999999999999999999999999999984 6999999
Q ss_pred CCC-CCcccHHHHHHcCCCCC--CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 541 DTV-LFNDTIFHNIRYGRLSA--TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 541 d~~-LF~gTIreNI~~g~~~~--sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
++. .|+.|++||+.+..... ..+...++++..++.+.. ...... |||
T Consensus 69 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~-----------~~~~~~-------------------LSg 118 (246)
T cd03237 69 YIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPLQIEQIL-----------DREVPE-------------------LSG 118 (246)
T ss_pred cccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHcCCHHHh-----------hCChhh-------------------CCH
Confidence 987 47899999997653221 122234455554443322 222223 999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCCEEE--E
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVI--E 692 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G~Iv--e 692 (728)
|||||++|||||+++|+++||||||++||+++...+.+.|+++.+ ++|+|+|||++..+.. ||+|++|+++..+ .
T Consensus 119 Ge~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~ 198 (246)
T cd03237 119 GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGV 198 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEE
Confidence 999999999999999999999999999999999999999998753 7999999999999875 9999999876544 5
Q ss_pred EcChHHHhh
Q 004826 693 QGSHDDLLT 701 (728)
Q Consensus 693 ~Gth~eLl~ 701 (728)
.++++++.+
T Consensus 199 ~~~~~~~~~ 207 (246)
T cd03237 199 ANPPQSLRS 207 (246)
T ss_pred eCCchHHHH
Confidence 667777654
No 319
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-38 Score=363.82 Aligned_cols=209 Identities=22% Similarity=0.452 Sum_probs=170.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia 536 (728)
-|+++||++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. +.+|+.|+
T Consensus 257 ~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 257 RLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 589999984 37999999999999999999999999999999999999999999999999987765 34678899
Q ss_pred EEcCCC---CCC-cccHHHHHHcCCCC--------CCHHHHHHHHHHhccHHHHHhC--C-CcccchhhccccccchhHH
Q 004826 537 VVPQDT---VLF-NDTIFHNIRYGRLS--------ATEEEVYDAARRAAIHDTIMNF--P-AKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 537 ~V~Qd~---~LF-~gTIreNI~~g~~~--------~sdeei~~A~~~a~l~~~I~~L--P-~G~dT~vgE~G~~~~~~~~ 601 (728)
||||++ .+| +.|++||+.++... .+.++.. ..+.++++.+ + +-.++.++ .
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~----~------ 395 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQ-----QAVSDFIRLFNIKTPSMEQAIG----L------ 395 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHH-----HHHHHHHHhcCCCCCCccCchh----h------
Confidence 999997 354 46999999875210 1111111 1122333332 1 11233222 2
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-c
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-C 679 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-a 679 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||++..+.. |
T Consensus 396 -------------LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~ 462 (501)
T PRK10762 396 -------------LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMS 462 (501)
T ss_pred -------------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhC
Confidence 99999999999999999999999999999999999999999998875 47899999999998755 9
Q ss_pred CeEEEEeCCEEEEEcChHHHh
Q 004826 680 DEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl 700 (728)
|+|++|++|+|++.|+.+++.
T Consensus 463 d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 463 DRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred CEEEEEECCEEEEEeccccCC
Confidence 999999999999999877653
No 320
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.4e-38 Score=343.71 Aligned_cols=181 Identities=35% Similarity=0.543 Sum_probs=156.2
Q ss_pred EECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcc-cHHHHHHcCCC--CCC----H
Q 004826 490 IVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRL--SAT----E 562 (728)
Q Consensus 490 IVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIreNI~~g~~--~~s----d 562 (728)
|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .+++|+||+|++.+|.. |++|||.|+.. ..+ +
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999987765 46789999999999975 99999998632 122 2
Q ss_pred HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcC
Q 004826 563 EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEAT 642 (728)
Q Consensus 563 eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaT 642 (728)
+++.++++..++.++..+.| .. ||||||||++|||||+++|++|||||||
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~-----------~~-------------------LSgGq~qRvalaraL~~~p~lllLDEP~ 128 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKP-----------HQ-------------------LSGGQQQRVALARALVFKPKILLLDEPL 128 (325)
T ss_pred HHHHHHHHHcCCcchhcCCh-----------hh-------------------CCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 34566666666655544433 23 9999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 643 SALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 643 SaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|+.+.
T Consensus 129 s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 129 SALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999988753 7999999999998754 999999999999999999999865
No 321
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-38 Score=298.14 Aligned_cols=206 Identities=35% Similarity=0.527 Sum_probs=170.6
Q ss_pred eEEEEEEEEEecC---CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH---HH
Q 004826 458 SIQFDNVHFSYLT---ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE---SL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~---~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~---~l 531 (728)
-|++++++..-+. .-.+|++|+|.|++||.+|||||||||||||+-+|+|+-+|++|+|++.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 4778888776653 23799999999999999999999999999999999999999999999999999999844 44
Q ss_pred h-cceEEEcCCCCCC-cccHHHHHHcCCC----CCCH--HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 532 R-KSIGVVPQDTVLF-NDTIFHNIRYGRL----SATE--EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 R-~~Ia~V~Qd~~LF-~gTIreNI~~g~~----~~sd--eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
| +++|+|+|..+|. +-|-.||+.+-.. ...| +.-.+-++.+++.+-+...
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~Hy---------------------- 143 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHY---------------------- 143 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccC----------------------
Confidence 4 5899999999987 5699999866421 1111 1123334444544433333
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhhcCe
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQCDE 681 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~aD~ 681 (728)
| .+|||||+||+||||||...|+||+=||||-+||.+|-++|-+-+..+. .|.|.++|||+.+....|||
T Consensus 144 ------P--~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R 215 (228)
T COG4181 144 ------P--AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDR 215 (228)
T ss_pred ------c--cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhh
Confidence 3 3399999999999999999999999999999999999999999886554 57899999999999999999
Q ss_pred EEEEeCCEEEEE
Q 004826 682 IIVLENGKVIEQ 693 (728)
Q Consensus 682 IiVld~G~Ive~ 693 (728)
++-|.+|+|++.
T Consensus 216 ~~r~~~G~l~~~ 227 (228)
T COG4181 216 QLRLRSGRLVED 227 (228)
T ss_pred eeeeecceeccC
Confidence 999999999863
No 322
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-38 Score=362.45 Aligned_cols=209 Identities=25% Similarity=0.440 Sum_probs=164.7
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..|+||
T Consensus 2 l~i~~ls~~~~-~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFG-AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeC-CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 78999999996 468999999999999999999999999999999999999999999999972 469999
Q ss_pred cCCCCCCcc-cHHHHHHcCCCC----------------CCHHH---HHHH----------HHHhccHHHHHhCCCcccch
Q 004826 539 PQDTVLFND-TIFHNIRYGRLS----------------ATEEE---VYDA----------ARRAAIHDTIMNFPAKYSTV 588 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~----------------~sdee---i~~A----------~~~a~l~~~I~~LP~G~dT~ 588 (728)
+|++.+|.. |++||+.++... .+.++ +.+. -....+++.++.+ |++..
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~ 147 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIPEE 147 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCChh
Confidence 999988764 999999875310 00000 0000 0001122223322 22111
Q ss_pred hhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEE
Q 004826 589 VGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIF 668 (728)
Q Consensus 589 vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIv 668 (728)
.-++ ...+||||||||++|||||+.+|++|||||||++||+++...+.+.|++ .++|+|+
T Consensus 148 ~~~~------------------~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiii 207 (530)
T PRK15064 148 QHYG------------------LMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMII 207 (530)
T ss_pred HhcC------------------chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEE
Confidence 1000 0123999999999999999999999999999999999999999999975 4799999
Q ss_pred eccCchHHhh-cCeEEEEeCCEE-EEEcChHHHhh
Q 004826 669 IAHRLTTAMQ-CDEIIVLENGKV-IEQGSHDDLLT 701 (728)
Q Consensus 669 IaHRLsti~~-aD~IiVld~G~I-ve~Gth~eLl~ 701 (728)
|||+++.+.. ||+|++|++|++ +..|++++.++
T Consensus 208 vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 208 ISHDRHFLNSVCTHMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EeCCHHHHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence 9999998765 999999999999 47999998875
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-38 Score=361.24 Aligned_cols=203 Identities=26% Similarity=0.440 Sum_probs=173.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|
T Consensus 319 ~l~~~~l~~~~~-~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~ 386 (530)
T PRK15064 319 ALEVENLTKGFD-NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGY 386 (530)
T ss_pred eEEEEeeEEeeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEE
Confidence 699999999996 457999999999999999999999999999999999999999999999982 57999
Q ss_pred EcCCCC--CC-cccHHHHHHcCC-CCCCHHHHHHHHHHhccH-HHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 538 VPQDTV--LF-NDTIFHNIRYGR-LSATEEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 538 V~Qd~~--LF-~gTIreNI~~g~-~~~sdeei~~A~~~a~l~-~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
|+|++. ++ ..|++||+.+.. +...++++.++++..++. +.. +..++ .
T Consensus 387 ~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~----~----------------- 438 (530)
T PRK15064 387 YAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDI-------KKSVK----V----------------- 438 (530)
T ss_pred EcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHh-------cCccc----c-----------------
Confidence 999974 44 369999997542 223455677777777662 222 22222 2
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCEEE
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 691 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv 691 (728)
||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++ +.|+|+|||.++.+.. ||+|++|++|+++
T Consensus 439 --LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 439 --LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9999999999999999999999999999999999999999999886 4599999999998875 9999999999998
Q ss_pred -EEcChHHHhhccc
Q 004826 692 -EQGSHDDLLTKAG 704 (728)
Q Consensus 692 -e~Gth~eLl~~~g 704 (728)
..|+++++++..|
T Consensus 515 ~~~g~~~~~~~~~~ 528 (530)
T PRK15064 515 DFSGTYEEYLRSQG 528 (530)
T ss_pred EcCCCHHHHHHHhC
Confidence 8899998876654
No 324
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-38 Score=362.58 Aligned_cols=209 Identities=23% Similarity=0.426 Sum_probs=171.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-HHHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~-~~~lR~~Ia 536 (728)
.++++||++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.|+
T Consensus 257 ~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 5899999853 4899999999999999999999999999999999999999999999999987654 345678999
Q ss_pred EEcCCCC---CC-cccHHHHHHcCCCCC--------CH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 537 VVPQDTV---LF-NDTIFHNIRYGRLSA--------TE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 537 ~V~Qd~~---LF-~gTIreNI~~g~~~~--------sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
||||++. +| +.|+.||+.++.... .. +++.++++..++. ++-.++.+++
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~~~~--------- 396 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK------TPSREQLIMN--------- 396 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc------cCCccCcccc---------
Confidence 9999973 55 579999998753110 11 1222333332221 1123333332
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-h
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-Q 678 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~ 678 (728)
||||||||++|||||+.+|++|||||||++||..+.+.+.+.|+++. .+.|+|+|||+++.+. .
T Consensus 397 --------------LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~ 462 (501)
T PRK11288 397 --------------LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGV 462 (501)
T ss_pred --------------CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhh
Confidence 99999999999999999999999999999999999999999998865 4789999999999885 5
Q ss_pred cCeEEEEeCCEEEEEcChHHHh
Q 004826 679 CDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gth~eLl 700 (728)
||+|++|++|++++.|+.+|..
T Consensus 463 ~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 463 ADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred CCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999988765
No 325
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.1e-37 Score=390.65 Aligned_cols=216 Identities=20% Similarity=0.361 Sum_probs=185.5
Q ss_pred eEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
-|+++||+++|++ ++++|+||||+|++||++||+|+||||||||+|+|+|+.+|++|+|.++|.++.+ +....|++||
T Consensus 1937 ~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IG 2015 (2272)
T TIGR01257 1937 ILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMG 2015 (2272)
T ss_pred eEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEE
Confidence 5999999999975 3689999999999999999999999999999999999999999999999999975 4567889999
Q ss_pred EEcCCCCCCc-ccHHHHHHcCC--CCCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 537 VVPQDTVLFN-DTIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~--~~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
|+||++.++. -|++|||.+.. ...+++ .+.++++..++.++.++. ++ .
T Consensus 2016 y~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~-------~~----~-------------- 2070 (2272)
T TIGR01257 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRL-------AG----T-------------- 2070 (2272)
T ss_pred EEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCC-------hh----h--------------
Confidence 9999999886 59999997631 112222 344556666665543332 21 2
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeC
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLEN 687 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~ 687 (728)
||||||||++|||||+.+|+||+||||||+||+.+.+.+.+.|+++. +|+|+|++||.++.++. ||||++|++
T Consensus 2071 -----LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~ 2145 (2272)
T TIGR01257 2071 -----YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVK 2145 (2272)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999998864 57999999999998875 999999999
Q ss_pred CEEEEEcChHHHhhccc
Q 004826 688 GKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~g 704 (728)
|+++..|+.++|.++-|
T Consensus 2146 G~i~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2146 GAFQCLGTIQHLKSKFG 2162 (2272)
T ss_pred CEEEEECCHHHHHHHhC
Confidence 99999999999977643
No 326
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-38 Score=306.33 Aligned_cols=223 Identities=27% Similarity=0.504 Sum_probs=185.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia 536 (728)
.+..+|+..+|. .++|+++|||++++||.|++.||+|+||||...++.||..|++|+|.+||.||..++... -|--||
T Consensus 4 ~L~a~~l~K~y~-kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYK-KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhC-CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 578889999995 678999999999999999999999999999999999999999999999999999999765 455799
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
|.|||+.+|.+ |++|||..--+ ..+.+.+.+-++..+++.++.+ .+...-...|.. |
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~s-------------------L 140 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF--HITHLRDSKAYS-------------------L 140 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh--chHHHhcCcccc-------------------c
Confidence 99999999976 99999976532 2332333344444444444433 233333345655 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCc-hHHhhcCeEEEEeCCEEEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRL-TTAMQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRL-sti~~aD~IiVld~G~Ive~ 693 (728)
|||||.|+.|||||..+|+.++||||.+++||.+-..|++-++.+.. |--+++.-|.. .|+.-|||.+++.+|+|..+
T Consensus 141 SGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~ 220 (243)
T COG1137 141 SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220 (243)
T ss_pred ccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEec
Confidence 99999999999999999999999999999999999999999988764 55666666986 58899999999999999999
Q ss_pred cChHHHhhcc
Q 004826 694 GSHDDLLTKA 703 (728)
Q Consensus 694 Gth~eLl~~~ 703 (728)
|+++|++++.
T Consensus 221 G~p~ei~~n~ 230 (243)
T COG1137 221 GSPEEIVNNE 230 (243)
T ss_pred CCHHHHhcCh
Confidence 9999998763
No 327
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9.8e-38 Score=357.44 Aligned_cols=211 Identities=20% Similarity=0.355 Sum_probs=170.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia 536 (728)
-|+++|++. .+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+... +|+.|+
T Consensus 268 ~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 499999984 2699999999999999999999999999999999999999999999999998877654 467899
Q ss_pred EEcCCC---CCCc-ccHHHHHHcCC----CC-CCHHHHHHHHHHhccHHHHHhC--C-CcccchhhccccccchhHHHhh
Q 004826 537 VVPQDT---VLFN-DTIFHNIRYGR----LS-ATEEEVYDAARRAAIHDTIMNF--P-AKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 537 ~V~Qd~---~LF~-gTIreNI~~g~----~~-~sdeei~~A~~~a~l~~~I~~L--P-~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
||||++ .+|. .|+.||+.... +. ....+.. ..+.++++.+ + +..+..++ .
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~l~~~~~~~~~~----~--------- 403 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRALNIKFNHAEQAAR----T--------- 403 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHcCCCCCCccCccc----c---------
Confidence 999986 3665 49999985320 10 0111111 1122333332 1 22333332 2
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|
T Consensus 404 ----------LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i 473 (510)
T PRK15439 404 ----------LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRV 473 (510)
T ss_pred ----------CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999998874 47999999999999865 9999
Q ss_pred EEEeCCEEEEEcChHHHhhc
Q 004826 683 IVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~ 702 (728)
++|++|+|+..|+.+++...
T Consensus 474 ~~l~~G~i~~~~~~~~~~~~ 493 (510)
T PRK15439 474 LVMHQGEISGALTGAAINVD 493 (510)
T ss_pred EEEECCEEEEEEccccCCHH
Confidence 99999999999998877533
No 328
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=2.6e-37 Score=295.29 Aligned_cols=143 Identities=36% Similarity=0.566 Sum_probs=134.7
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
++++||+++|++ .++|+++||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. +.++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 478999999964 47999999999999999999999999999999999999999999999994 479999
Q ss_pred cCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
+| ||+|
T Consensus 69 ~~--------------------------------------------------------------------------lS~G 74 (144)
T cd03221 69 EQ--------------------------------------------------------------------------LSGG 74 (144)
T ss_pred cc--------------------------------------------------------------------------CCHH
Confidence 99 6999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCE
Q 004826 619 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGK 689 (728)
Q Consensus 619 QrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~ 689 (728)
|+||++||||++++|+++||||||++||+.+...+.+.|+++ ++|+|++||+++.+.. ||+|++|++||
T Consensus 75 ~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 75 EKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999999886 5899999999999865 89999999986
No 329
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.5e-38 Score=295.95 Aligned_cols=214 Identities=34% Similarity=0.563 Sum_probs=179.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----------
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---------- 527 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~---------- 527 (728)
.++.+|++-+|. ...||++|||+.++|+.|+|+|.|||||||+++.|.=|-.|++|+|.++|..|+--.
T Consensus 6 ~l~v~dlHK~~G-~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 6 ALEVEDLHKRYG-EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred ceehhHHHhhcc-cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 588999999996 446999999999999999999999999999999999999999999999998765322
Q ss_pred ---HHHHhcceEEEcCCCCCCc-ccHHHHHHcCCC---CCCHHH-HH---HHHHHhccHHHHHhCCCcccchhhcccccc
Q 004826 528 ---LESLRKSIGVVPQDTVLFN-DTIFHNIRYGRL---SATEEE-VY---DAARRAAIHDTIMNFPAKYSTVVGERGLKG 596 (728)
Q Consensus 528 ---~~~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~---~~sdee-i~---~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~ 596 (728)
.+.+|.+.++|+|...|.+ .|+.||+.=+.- ..+..| +. .-+.++++.|--+.-|
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-------------- 150 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP-------------- 150 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc--------------
Confidence 5678999999999999986 599999843210 123332 22 2334445554333322
Q ss_pred chhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchH
Q 004826 597 RSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT 675 (728)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLst 675 (728)
..|||||+||.||||||.-+|+++++|||||||||+---++++-++.+. .|||.++|||-+..
T Consensus 151 ----------------~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F 214 (256)
T COG4598 151 ----------------AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF 214 (256)
T ss_pred ----------------cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH
Confidence 2399999999999999999999999999999999999999999888875 58999999999999
Q ss_pred Hhh-cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 676 AMQ-CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 676 i~~-aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
.++ +.+++.|.+|+|-|+|+++++..+
T Consensus 215 AR~Vss~v~fLh~G~iEE~G~P~qvf~n 242 (256)
T COG4598 215 ARDVSSHVIFLHQGKIEEEGPPEQVFGN 242 (256)
T ss_pred HHhhhhheEEeecceecccCChHHHhcC
Confidence 998 789999999999999999999865
No 330
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=3.8e-37 Score=332.47 Aligned_cols=207 Identities=30% Similarity=0.523 Sum_probs=177.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia 536 (728)
.++++|++..|| +-.+++||||++++||+.||.|++|+|||||++.|.|+|+|++|+|++||++++=-++ +..|.-||
T Consensus 4 ~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred eEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 589999999998 6678999999999999999999999999999999999999999999999999887664 55777899
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCCCC-----CH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRLSA-----TE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~-----sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
+|.|.+.|+.. |+.|||.+|.+.. +- +++.+.++.- .||--.|..|++
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~y-------Gl~vdp~~~V~d--------------- 140 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERY-------GLPVDPDAKVAD--------------- 140 (501)
T ss_pred EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHh-------CCCCCccceeec---------------
Confidence 99999999965 9999999998632 21 2222222222 234444555554
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||-|||||+.|-+||+++|+|||||||||-|-|..-+.+++.++++. .|+|+|+|||+|..++. |||+-|
T Consensus 141 --------LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTV 212 (501)
T COG3845 141 --------LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTV 212 (501)
T ss_pred --------CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEE
Confidence 99999999999999999999999999999999999999999999876 58999999999999877 999999
Q ss_pred EeCCEEEEEcC
Q 004826 685 LENGKVIEQGS 695 (728)
Q Consensus 685 ld~G~Ive~Gt 695 (728)
|.+||+|..-+
T Consensus 213 LR~Gkvvgt~~ 223 (501)
T COG3845 213 LRRGKVVGTVD 223 (501)
T ss_pred EeCCeEEeeec
Confidence 99999875443
No 331
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-37 Score=287.37 Aligned_cols=213 Identities=31% Similarity=0.531 Sum_probs=179.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCE--eCCCCC----HHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ--DICEVT----LESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~--di~~i~----~~~l 531 (728)
.|+++|++|.|. ..++|.||+|+.+.||++.+.||||+|||||++.|.=+--|.+|+..|-|. |.++.. ...|
T Consensus 2 sirv~~in~~yg-~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYG-AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEcccccccc-cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 589999999996 457999999999999999999999999999999999999999999999874 454443 5679
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHHcCC---CCCCHHH----HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 532 RKSIGVVPQDTVLFN-DTIFHNIRYGR---LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~-gTIreNI~~g~---~~~sdee----i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
|+.+|+|+|.-.|.. -|+-||+.=.. ...++++ -.+.++...+.++-+++|-
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~pl-------------------- 140 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPL-------------------- 140 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCce--------------------
Confidence 999999999999985 59999984321 1233332 3344555566666555552
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCe
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~ 681 (728)
.|||||+||+||||||.-+|++|++||||+||||+-..+|.+.|+++. .|-|-++|||.....+. |.+
T Consensus 141 ----------hlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~ 210 (242)
T COG4161 141 ----------HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASR 210 (242)
T ss_pred ----------ecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhh
Confidence 299999999999999999999999999999999999999999999886 47999999999998876 899
Q ss_pred EEEEeCCEEEEEcChHHHhh
Q 004826 682 IIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~ 701 (728)
++.||+|+|||+|+|.-.-+
T Consensus 211 vvyme~g~ive~g~a~~ft~ 230 (242)
T COG4161 211 VVYMENGHIVEQGDASCFTE 230 (242)
T ss_pred eEeeecCeeEeecchhhccC
Confidence 99999999999999876543
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=3.3e-37 Score=351.85 Aligned_cols=206 Identities=24% Similarity=0.325 Sum_probs=165.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCC-CCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICE-VTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~-i~~~~lR~~I 535 (728)
-|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .....+|++|
T Consensus 260 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (490)
T PRK10938 260 RIVLNNGVVSYN-DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI 338 (490)
T ss_pred eEEEeceEEEEC-CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc
Confidence 599999999996 35799999999999999999999999999999999999876 69999999987632 2344578899
Q ss_pred EEEcCCCCCCc---ccHHHHHHcCCC-------CCC---HHHHHHHHHHhccHH-HHHhCCCcccchhhccccccchhHH
Q 004826 536 GVVPQDTVLFN---DTIFHNIRYGRL-------SAT---EEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 536 a~V~Qd~~LF~---gTIreNI~~g~~-------~~s---deei~~A~~~a~l~~-~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
+||+|++.++. .|++||+.++.. ... ++++.++++..++.+ . .+..++ .
T Consensus 339 ~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~----~------ 401 (490)
T PRK10938 339 GYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRT-------ADAPFH----S------ 401 (490)
T ss_pred eEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhh-------ccCchh----h------
Confidence 99999987643 477777754310 011 233455555555432 2 122222 2
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-C-CeEEEeccCchHHhh-
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-N-RTSIFIAHRLTTAMQ- 678 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~-~TvIvIaHRLsti~~- 678 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ + .|+|+|||+++.+..
T Consensus 402 -------------LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~ 468 (490)
T PRK10938 402 -------------LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPAC 468 (490)
T ss_pred -------------CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhh
Confidence 999999999999999999999999999999999999999999988753 3 469999999999964
Q ss_pred -cCeEEEEeCCEEEEEc
Q 004826 679 -CDEIIVLENGKVIEQG 694 (728)
Q Consensus 679 -aD~IiVld~G~Ive~G 694 (728)
||+|++|++|+|++.-
T Consensus 469 ~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 469 ITHRLEFVPDGDIYRYV 485 (490)
T ss_pred hheeEEEecCCceEEee
Confidence 8999999999998753
No 333
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-37 Score=348.94 Aligned_cols=209 Identities=24% Similarity=0.380 Sum_probs=167.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH-HHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE-SLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~-~lR~~Ia 536 (728)
-|+++||+++| +++|+|+||+|++||++||+|+||||||||+++|+|+.+|++|+|.+||.++...+.. .+|+.++
T Consensus 250 ~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 250 ILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 59999999985 3699999999999999999999999999999999999999999999999999877654 4577899
Q ss_pred EEcCCCC---CCc-ccHHHH-----HHcCCCC---CCHHHHHHHHHHhccHHHHHhCCC---cccchhhccccccchhHH
Q 004826 537 VVPQDTV---LFN-DTIFHN-----IRYGRLS---ATEEEVYDAARRAAIHDTIMNFPA---KYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 537 ~V~Qd~~---LF~-gTIreN-----I~~g~~~---~sdeei~~A~~~a~l~~~I~~LP~---G~dT~vgE~G~~~~~~~~ 601 (728)
||||++. +|. .|+.+| +.+..+. .+.++..+ .+.++++.+.- -.++.++
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~l~~~~~~~~~~----------- 390 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS-----DTQWVIDSMRVKTPGHRTQIG----------- 390 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH-----HHHHHHHhcCccCCCcccccc-----------
Confidence 9999963 565 467666 4322111 12122211 12233333311 1233333
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hc
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QC 679 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~a 679 (728)
+||||||||++||||++.+|+||||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+. .|
T Consensus 391 ------------~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~ 458 (491)
T PRK10982 391 ------------SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGIT 458 (491)
T ss_pred ------------cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhC
Confidence 299999999999999999999999999999999999999999998764 5799999999999885 59
Q ss_pred CeEEEEeCCEEEEEcChH
Q 004826 680 DEIIVLENGKVIEQGSHD 697 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~ 697 (728)
|+|++|++|+++..++.+
T Consensus 459 d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 459 DRILVMSNGLVAGIVDTK 476 (491)
T ss_pred CEEEEEECCEEEEEEccc
Confidence 999999999999888654
No 334
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-37 Score=309.37 Aligned_cols=197 Identities=34% Similarity=0.555 Sum_probs=178.4
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----CCHHHHhcceEEEcCCCCCCc-ccHHH
Q 004826 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRKSIGVVPQDTVLFN-DTIFH 551 (728)
Q Consensus 477 ~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----i~~~~lR~~Ia~V~Qd~~LF~-gTIre 551 (728)
++||+.+.-..+||-|+||||||||+|+|+|+..|++|.|.+||.-+.| +...--+++||||+||.-||. -|||-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6889998878999999999999999999999999999999999975544 556677889999999999995 69999
Q ss_pred HHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhcc
Q 004826 552 NIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLK 631 (728)
Q Consensus 552 NI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~ 631 (728)
|++||....+.++..+++..-++...+.+.|. + ||||||||+||+|||+.
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~-----------~-------------------LSGGEkQRVAIGRALLt 145 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPG-----------T-------------------LSGGEKQRVAIGRALLT 145 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCC-----------c-------------------cCcchhhHHHHHHHHhc
Confidence 99999877778889999999999998888873 2 99999999999999999
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeCCEEEEEcChHHHhhcc
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~G~Ive~Gth~eLl~~~ 703 (728)
+|++|+||||.|+||-...++|+--|+++.+ +--++.|||.+..+ +-||+|+||++|||...|.-+|.++..
T Consensus 146 ~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 146 APELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred CCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 9999999999999999999999999988865 46789999999875 669999999999999999999998764
No 335
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5e-36 Score=352.38 Aligned_cols=199 Identities=26% Similarity=0.371 Sum_probs=166.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+|+|++++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +..|+|
T Consensus 508 ~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igy 576 (718)
T PLN03073 508 IISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAV 576 (718)
T ss_pred eEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEE
Confidence 599999999997556799999999999999999999999999999999999999999999876 247999
Q ss_pred EcCCCCCCcccHHHHHHcC----CCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 538 VPQDTVLFNDTIFHNIRYG----RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g----~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
++|++. ...++.+|+.+. .+..+++++.++++..++.+.... . ....
T Consensus 577 v~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~------~----~~~~------------------ 627 (718)
T PLN03073 577 FSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLAL------Q----PMYT------------------ 627 (718)
T ss_pred Eecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhc------C----Cccc------------------
Confidence 999973 333555664221 234567778888888877532211 1 1122
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCEEE-
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI- 691 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv- 691 (728)
||||||||++||||++.+|++|||||||++||+.+...+.+.|.+. + .|+|+|||++..+.. ||+|++|++|+|+
T Consensus 628 -LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~ 704 (718)
T PLN03073 628 -LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTP 704 (718)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999875 3 499999999998875 9999999999998
Q ss_pred EEcChHHH
Q 004826 692 EQGSHDDL 699 (728)
Q Consensus 692 e~Gth~eL 699 (728)
..|++++.
T Consensus 705 ~~g~~~~~ 712 (718)
T PLN03073 705 FHGTFHDY 712 (718)
T ss_pred eCCCHHHH
Confidence 57887764
No 336
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-36 Score=287.92 Aligned_cols=204 Identities=27% Similarity=0.449 Sum_probs=167.4
Q ss_pred eEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
....++++.+|+. ..++|+|+|++|++||.|+++||||||||||+|+++||.+|..|+|.+||.+|..-.- .=|
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 3567889999974 2469999999999999999999999999999999999999999999999999887663 349
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCC--CCCHHHH----HHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRL--SATEEEV----YDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~sdeei----~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
+|+|++-|+.- ++.||+.||-. ..+.++- .+.+..+++.++=.+.
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~---------------------------- 129 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKY---------------------------- 129 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccc----------------------------
Confidence 99999999984 99999999952 3333332 2233333443321111
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH-HhhcCeEEEEe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLE 686 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst-i~~aD~IiVld 686 (728)
...||||||||+.|||||.-+|+.|+||||.+|||+-|.+++|+.|-.+. .|+-+++|||.++. +--|++++||+
T Consensus 130 --i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvls 207 (259)
T COG4525 130 --IWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLS 207 (259)
T ss_pred --eEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEec
Confidence 12399999999999999999999999999999999999999999987654 58999999999986 45599999997
Q ss_pred --CCEEEEEcCh
Q 004826 687 --NGKVIEQGSH 696 (728)
Q Consensus 687 --~G~Ive~Gth 696 (728)
.|+||+.=+.
T Consensus 208 p~pgRvv~~~~~ 219 (259)
T COG4525 208 PGPGRVVERLPL 219 (259)
T ss_pred CCCceeeEecCC
Confidence 5899987554
No 337
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.4e-36 Score=373.11 Aligned_cols=213 Identities=24% Similarity=0.392 Sum_probs=178.1
Q ss_pred ceEEEEEEEEEecC------------CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC--CCCEEEECCEe
Q 004826 457 GSIQFDNVHFSYLT------------ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQD 522 (728)
Q Consensus 457 g~I~f~nVsF~Y~~------------~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~d 522 (728)
..+.|+||++.++. .+++|+|||++|+||+.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 36999999998851 23799999999999999999999999999999999999874 78999999988
Q ss_pred CCCCCHHHHhcceEEEcCCCCCCc-ccHHHHHHcCC----C-CCCHHH----HHHHHHHhccHHHHHhCCCcccchhhcc
Q 004826 523 ICEVTLESLRKSIGVVPQDTVLFN-DTIFHNIRYGR----L-SATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGER 592 (728)
Q Consensus 523 i~~i~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~----~-~~sdee----i~~A~~~a~l~~~I~~LP~G~dT~vgE~ 592 (728)
.+ ...+|+.+|||+|++.++. .|++|||.|+. | +.++++ +.+.++..++.+ -.|+.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 65 3467888999999987775 59999998752 2 233333 455555555543 357888765
Q ss_pred ccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEecc
Q 004826 593 GLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAH 671 (728)
Q Consensus 593 G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaH 671 (728)
|.+ .||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|
T Consensus 1016 ~~~------------------~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~H 1077 (1470)
T PLN03140 1016 GVT------------------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1077 (1470)
T ss_pred CCC------------------CcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 432 199999999999999999999999999999999999999999999875 4799999999
Q ss_pred CchH--HhhcCeEEEEeC-CEEEEEcChH
Q 004826 672 RLTT--AMQCDEIIVLEN-GKVIEQGSHD 697 (728)
Q Consensus 672 RLst--i~~aD~IiVld~-G~Ive~Gth~ 697 (728)
+++. .+.+|++++|++ |+++..|+.+
T Consensus 1078 q~~~~i~~~~D~vllL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1078 QPSIDIFEAFDELLLMKRGGQVIYSGPLG 1106 (1470)
T ss_pred CCCHHHHHhCCEEEEEcCCCEEEEECCcc
Confidence 9984 477999999996 8999999853
No 338
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.1e-35 Score=343.95 Aligned_cols=202 Identities=27% Similarity=0.398 Sum_probs=164.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ ++ .|||
T Consensus 324 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~----------~i~~ 391 (556)
T PRK11819 324 VIEAENLSKSFG-DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-TV----------KLAY 391 (556)
T ss_pred EEEEEeEEEEEC-CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-ce----------EEEE
Confidence 599999999996 45799999999999999999999999999999999999999999999964 21 5999
Q ss_pred EcCCC-CCCc-ccHHHHHHcCCCC----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 538 VPQDT-VLFN-DTIFHNIRYGRLS----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 538 V~Qd~-~LF~-gTIreNI~~g~~~----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
|||++ .++. -|++||+.++... ..+++..++++..++.+. ..+..++ .
T Consensus 392 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~----~---------------- 445 (556)
T PRK11819 392 VDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGG------DQQKKVG----V---------------- 445 (556)
T ss_pred EeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChh------HhcCchh----h----------------
Confidence 99997 5654 5999999876321 112333344444433210 1122222 2
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeC-CE
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLEN-GK 689 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~-G~ 689 (728)
||||||||++||||++.+|++|||||||++||+.+...+.+.|+++ + .|+|+|||.+..+.. ||+|++|++ |+
T Consensus 446 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~ 520 (556)
T PRK11819 446 ---LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQ 520 (556)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCe
Confidence 9999999999999999999999999999999999999999999986 3 499999999998765 999999986 88
Q ss_pred EEE-EcChHHHhhc
Q 004826 690 VIE-QGSHDDLLTK 702 (728)
Q Consensus 690 Ive-~Gth~eLl~~ 702 (728)
+++ .|+++++++.
T Consensus 521 ~~~~~g~~~~~~~~ 534 (556)
T PRK11819 521 VEWFEGNFQEYEED 534 (556)
T ss_pred EEEecCCHHHHHHH
Confidence 874 7888777654
No 339
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-36 Score=288.60 Aligned_cols=155 Identities=49% Similarity=0.756 Sum_probs=145.7
Q ss_pred EEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEc
Q 004826 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (728)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~ 539 (728)
+++|++|+|++ +++|+++||+|++|+.++|+|+||||||||+++|+|+++|++|+|.+||.++.+.....+++.++|++
T Consensus 1 ~~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 1 EIENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred CeEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 37899999964 47999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred CCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhH
Q 004826 540 QDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE 619 (728)
Q Consensus 540 Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQ 619 (728)
| |||||
T Consensus 80 q--------------------------------------------------------------------------lS~G~ 85 (157)
T cd00267 80 Q--------------------------------------------------------------------------LSGGQ 85 (157)
T ss_pred e--------------------------------------------------------------------------CCHHH
Confidence 9 69999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cCeEEEEeCCE
Q 004826 620 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEIIVLENGK 689 (728)
Q Consensus 620 rQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD~IiVld~G~ 689 (728)
+||++||||++.+|+++||||||++||.++...+.+.|++..+ ++|+|+|||+++.+.+ ||+|++|++|+
T Consensus 86 ~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 86 RQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999987654 4899999999999988 59999999985
No 340
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-35 Score=343.09 Aligned_cols=200 Identities=25% Similarity=0.396 Sum_probs=166.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..|||
T Consensus 312 ~l~~~~l~~~y~-~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGYG-DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY 379 (638)
T ss_pred eEEEEeeEEEeC-CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence 599999999995 467999999999999999999999999999999999999999999999741 26999
Q ss_pred EcCCC--CCCc-ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 538 VPQDT--VLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 538 V~Qd~--~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
++|++ .++. .|+.+|+....+...++++.++++..++.+. -.+.+++ .
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~~~----~------------------- 430 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGD------KVTEETR----R------------------- 430 (638)
T ss_pred ecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChh------HhcCchh----h-------------------
Confidence 99985 3443 4889987532233344556666666555311 1122232 2
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCEEE-E
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI-E 692 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv-e 692 (728)
||||||||++|||||+.+|++|||||||++||..+...+.+.|+++ . .|+|+|||++..+.. ||+|++|++|+|+ .
T Consensus 431 LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~ 508 (638)
T PRK10636 431 FSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPF 508 (638)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEc
Confidence 9999999999999999999999999999999999999999999986 4 499999999998865 9999999999997 6
Q ss_pred EcChHHHh
Q 004826 693 QGSHDDLL 700 (728)
Q Consensus 693 ~Gth~eLl 700 (728)
.|++++..
T Consensus 509 ~g~~~~~~ 516 (638)
T PRK10636 509 DGDLEDYQ 516 (638)
T ss_pred CCCHHHHH
Confidence 89998874
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.2e-35 Score=341.25 Aligned_cols=201 Identities=27% Similarity=0.397 Sum_probs=162.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+.+|++|+|.+++ ++ .|+|
T Consensus 322 ~l~~~~l~~~~~-~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~~----------~i~~ 389 (552)
T TIGR03719 322 VIEAENLSKGFG-DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-TV----------KLAY 389 (552)
T ss_pred EEEEeeEEEEEC-CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-ce----------EEEE
Confidence 599999999996 45799999999999999999999999999999999999999999999965 21 6999
Q ss_pred EcCCCC-CCc-ccHHHHHHcCCCC--CC--HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 538 VPQDTV-LFN-DTIFHNIRYGRLS--AT--EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 538 V~Qd~~-LF~-gTIreNI~~g~~~--~s--deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
|||++. ++. .|++||+.++.+. .. +++..++++..++.+. -.+..++ .
T Consensus 390 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~----~---------------- 443 (552)
T TIGR03719 390 VDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGS------DQQKKVG----Q---------------- 443 (552)
T ss_pred EeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChh------HhcCchh----h----------------
Confidence 999973 554 5999999886431 11 2223333333333210 0122222 2
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeC-CE
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLEN-GK 689 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~-G~ 689 (728)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .|+|+|||++..+.. ||+|++|++ |+
T Consensus 444 ---LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~ 518 (552)
T TIGR03719 444 ---LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSH 518 (552)
T ss_pred ---CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCe
Confidence 99999999999999999999999999999999999999999999873 499999999998875 999999997 58
Q ss_pred EE-EEcChHHHhh
Q 004826 690 VI-EQGSHDDLLT 701 (728)
Q Consensus 690 Iv-e~Gth~eLl~ 701 (728)
++ ..|+.++..+
T Consensus 519 ~~~~~g~~~~~~~ 531 (552)
T TIGR03719 519 VEWFEGNYSEYEE 531 (552)
T ss_pred EEEeCCCHHHHHH
Confidence 76 4577766543
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.9e-35 Score=344.92 Aligned_cols=201 Identities=28% Similarity=0.441 Sum_probs=164.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.+ |.++ .|+|
T Consensus 319 ~l~~~~l~~~~~-~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQID-GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAY 386 (635)
T ss_pred eEEEeeeEEEEC-CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEE
Confidence 499999999996 467999999999999999999999999999999999999999999999 4332 5999
Q ss_pred EcCCC-CCCc-ccHHHHHHcCCCCC--C--HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 538 VPQDT-VLFN-DTIFHNIRYGRLSA--T--EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 538 V~Qd~-~LF~-gTIreNI~~g~~~~--s--deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
|+|++ .++. .|+.||+.++.+.. + +.++.+.++..++.+ +..++++++
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~------~~~~~~~~~-------------------- 440 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHP------KRAMTPVKA-------------------- 440 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCH------HHHhChhhh--------------------
Confidence 99986 4655 49999998864322 1 223333333333311 112333332
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEe-CCE
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLE-NGK 689 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld-~G~ 689 (728)
||||||||++|||||+.+|++|||||||++||..+...+.+.|++. +.|+|+|||+++.+.. ||+|++|+ +|+
T Consensus 441 ---LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~ 515 (635)
T PRK11147 441 ---LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGK 515 (635)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCe
Confidence 9999999999999999999999999999999999999999999875 4699999999998864 99999998 899
Q ss_pred EEE-EcChHHHhh
Q 004826 690 VIE-QGSHDDLLT 701 (728)
Q Consensus 690 Ive-~Gth~eLl~ 701 (728)
|++ .|++++-+.
T Consensus 516 i~~~~g~y~~y~~ 528 (635)
T PRK11147 516 IGRYVGGYHDARQ 528 (635)
T ss_pred EEEccCCHHHHHH
Confidence 976 578877643
No 343
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.7e-35 Score=291.41 Aligned_cols=155 Identities=28% Similarity=0.344 Sum_probs=136.4
Q ss_pred EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCC
Q 004826 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd 541 (728)
.||+++|. ++++++++ |+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~~-~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYG-VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEEC-CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 58899995 46789984 9999999999999999999999999999999999999999963 7888886
Q ss_pred CCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHH
Q 004826 542 TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQ 621 (728)
Q Consensus 542 ~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQ 621 (728)
+. |||||||
T Consensus 70 ~~-----------------------------------------------------------------------LSgGq~q 78 (177)
T cd03222 70 ID-----------------------------------------------------------------------LSGGELQ 78 (177)
T ss_pred CC-----------------------------------------------------------------------CCHHHHH
Confidence 42 6999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-C-CCeEEEeccCchHHhh-cCeEEEEeCCEEEEE--cCh
Q 004826 622 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-N-NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQ--GSH 696 (728)
Q Consensus 622 RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~-~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~--Gth 696 (728)
|++||||++.+|++++|||||++||+++.+.+.+.++++. + ++|+|+|||+++.++. ||+|++|+++-.+.+ |.+
T Consensus 79 rv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~ 158 (177)
T cd03222 79 RVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQP 158 (177)
T ss_pred HHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCC
Confidence 9999999999999999999999999999999999998864 3 3899999999999884 999999998876633 555
Q ss_pred HHHhh
Q 004826 697 DDLLT 701 (728)
Q Consensus 697 ~eLl~ 701 (728)
.--.+
T Consensus 159 ~~~~~ 163 (177)
T cd03222 159 KGTRE 163 (177)
T ss_pred cchhH
Confidence 43333
No 344
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4.1e-35 Score=338.79 Aligned_cols=192 Identities=21% Similarity=0.296 Sum_probs=162.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-++++|++++|++ ..|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++ ..|+|
T Consensus 340 ~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISY 404 (590)
T ss_pred EEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEE
Confidence 5999999999964 35999999999999999999999999999999999999999999986 15999
Q ss_pred EcCCCCC-CcccHHHHHHcCCCCCC-HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 538 VPQDTVL-FNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~~s-deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+||++.+ ++.|++||+.++..... +..+.++++..++.+...+ .++ +|
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~-------~~~-----------------------~L 454 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDK-------NVK-----------------------DL 454 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhC-------Ccc-----------------------cC
Confidence 9999875 56799999988643222 3345566666666543322 222 29
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh-cCeEEEEeCCEEEE
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~-aD~IiVld~G~Ive 692 (728)
|||||||++|||||+++|+||||||||++||.++...+.+.|+++.+ ++|+|+|||++..+.. ||+|+||++ +++.
T Consensus 455 SGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence 99999999999999999999999999999999999999999998753 7999999999998764 999999965 8887
Q ss_pred EcC
Q 004826 693 QGS 695 (728)
Q Consensus 693 ~Gt 695 (728)
.|+
T Consensus 534 ~g~ 536 (590)
T PRK13409 534 HGH 536 (590)
T ss_pred eee
Confidence 776
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.2e-35 Score=289.19 Aligned_cols=161 Identities=29% Similarity=0.393 Sum_probs=131.5
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHH
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 550 (728)
..++|+|+||+|++|++++|+||||||||||+++++ +++|+|.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 457999999999999999999999999999999985 379999998862 222 2456889888
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhc
Q 004826 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFL 630 (728)
Q Consensus 551 eNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl 630 (728)
.++++..++ ++.+ +.+.... ||||||||++||||++
T Consensus 68 ---------------~~~l~~~~L---------~~~~-~~~~~~~-------------------LSgGq~qrl~laral~ 103 (176)
T cd03238 68 ---------------LQFLIDVGL---------GYLT-LGQKLST-------------------LSGGELQRVKLASELF 103 (176)
T ss_pred ---------------HHHHHHcCC---------Cccc-cCCCcCc-------------------CCHHHHHHHHHHHHHh
Confidence 123333332 2111 2333434 9999999999999999
Q ss_pred cC--CCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEeC------CEEEEEc
Q 004826 631 KA--PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLEN------GKVIEQG 694 (728)
Q Consensus 631 ~~--p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~------G~Ive~G 694 (728)
++ |++|||||||++||+++.+.+.+.|+++. .++|+|+|||+++.++.||+|++|++ |++||.|
T Consensus 104 ~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~~~~~~~~~~~ 176 (176)
T cd03238 104 SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176 (176)
T ss_pred hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCCCCCcEEEecC
Confidence 99 99999999999999999999999998875 58999999999999999999999965 6666654
No 346
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.8e-36 Score=286.25 Aligned_cols=221 Identities=29% Similarity=0.519 Sum_probs=189.9
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+.+|. ++.||+++|++|++|+.++|+||+|+|||||+.+++||.++++|+|.+||.++.+++-++|.+.+++.
T Consensus 2 I~i~nv~K~y~-~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYG-TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhC-CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 78999999995 67899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCc-ccHHHHHHcCC-C------CCCHH-HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 539 PQDTVLFN-DTIFHNIRYGR-L------SATEE-EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 539 ~Qd~~LF~-gTIreNI~~g~-~------~~sde-ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
-|+.++-. -||||=+.||+ | ...|. .|.+|++--++.+. .+.|= .
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l----~dryL---d------------------- 134 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDL----SDRYL---D------------------- 134 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccch----HHHhH---H-------------------
Confidence 99999765 49999999997 2 12222 25666666665442 11121 1
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLE 686 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld 686 (728)
.||||||||--||-.+.+|.+.++||||..+||-.-...+++.|+++.. +||+++|-|...... .+|.|+-|+
T Consensus 135 ----~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK 210 (252)
T COG4604 135 ----ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALK 210 (252)
T ss_pred ----hcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeec
Confidence 1999999999999999999999999999999999999999999988753 799999999999865 499999999
Q ss_pred CCEEEEEcChHHHhhccchHHHHHH
Q 004826 687 NGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
+|++|.+|+++|.++.. .-.++|.
T Consensus 211 ~G~vv~~G~~~eii~~~-~L~eiyd 234 (252)
T COG4604 211 NGKVVKQGSPDEIIQPE-ILSEIYD 234 (252)
T ss_pred CCEEEecCCHHHhcCHH-HHHHHhc
Confidence 99999999999999753 2344443
No 347
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.8e-35 Score=368.47 Aligned_cols=208 Identities=27% Similarity=0.339 Sum_probs=170.0
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC----CCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc-
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF----DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN- 546 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly----~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~- 546 (728)
+++|+|+|++++|||.+||+||||||||||+|+|+|.. .|.+|+|.+||+++.+.. ..+|+.++||+|+..+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 35999999999999999999999999999999999986 579999999999987654 456788999999988886
Q ss_pred ccHHHHHHcCC----C-----CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 547 DTIFHNIRYGR----L-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 547 gTIreNI~~g~----~-----~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
-|++|||.|+. | +.++++..+.....-++. -.|.+-.||.||+.-.+ .|||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgL~~~~~t~vg~~~~~------------------~LSG 212 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMAT--YGLSHTRNTKVGNDFVR------------------GVSG 212 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH--cCcccccCceeCCCcCC------------------CCCc
Confidence 59999998852 1 123333221111111111 14455578999874432 2999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCch-HH-hhcCeEEEEeCCEEEEE
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLT-TA-MQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLs-ti-~~aD~IiVld~G~Ive~ 693 (728)
|||||++|||||+.+|+||+||||||+||+.+...+.+.|+++.+ ++|+|+++|+.+ .+ +.+|+|++|++|+++..
T Consensus 213 GerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~ 292 (1394)
T TIGR00956 213 GERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292 (1394)
T ss_pred ccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEE
Confidence 999999999999999999999999999999999999999999863 799999999974 44 56999999999999999
Q ss_pred cChHHHh
Q 004826 694 GSHDDLL 700 (728)
Q Consensus 694 Gth~eLl 700 (728)
|+.+++.
T Consensus 293 G~~~~~~ 299 (1394)
T TIGR00956 293 GPADKAK 299 (1394)
T ss_pred CCHHHHH
Confidence 9998884
No 348
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.8e-34 Score=302.72 Aligned_cols=225 Identities=31% Similarity=0.524 Sum_probs=184.5
Q ss_pred eEEEEEEEEEec---CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-----CCCEEEECCEeCCCCCHH
Q 004826 458 SIQFDNVHFSYL---TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-----HSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~---~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-----~~G~I~idG~di~~i~~~ 529 (728)
-++++|++..|. ...+++++|||+|++||++||||+||||||-.++.++||.+- .+|+|+++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 378888888875 245899999999999999999999999999999999999864 479999999999999999
Q ss_pred HHhc----ceEEEcCCCCC-Cc------ccHHHHHHcCCC---CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccc
Q 004826 530 SLRK----SIGVVPQDTVL-FN------DTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (728)
Q Consensus 530 ~lR~----~Ia~V~Qd~~L-F~------gTIreNI~~g~~---~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~ 595 (728)
.+|+ .|++|+|||.- .| .-|.|-|.+.+- .+-.+++.+.++.+++.+-=
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~----------------- 148 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPE----------------- 148 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchh-----------------
Confidence 9886 89999999952 22 234555555431 23345666777777664411
Q ss_pred cchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCc
Q 004826 596 GRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRL 673 (728)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRL 673 (728)
++++.-|- .||||||||+-||-||..+|++||=||||.|||....++|.+-|+.+. .|..+++|||+|
T Consensus 149 --------~rl~~yPH--eLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 149 --------KRLDAYPH--ELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred --------hhhhhCCc--ccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 12333332 399999999999999999999999999999999999999999998775 479999999999
Q ss_pred hHHhh-cCeEEEEeCCEEEEEcChHHHhhc-cchHHHH
Q 004826 674 TTAMQ-CDEIIVLENGKVIEQGSHDDLLTK-AGRYAQL 709 (728)
Q Consensus 674 sti~~-aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~l 709 (728)
+.++. ||||+||.+|+|||+|+-++|.+. ...|-+.
T Consensus 219 ~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr~ 256 (534)
T COG4172 219 GIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRK 256 (534)
T ss_pred HHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHHH
Confidence 99977 999999999999999999999875 4556443
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-34 Score=333.55 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=158.0
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|+ ++++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .|+|+
T Consensus 2 i~i~nls~~~g-~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRG-VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWV 69 (638)
T ss_pred EEEEEEEEEeC-CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEE
Confidence 78999999995 5679999999999999999999999999999999999999999999999842 48999
Q ss_pred cCCCCCCcccHHHHHHcCCCCCCH--HHHHHH------HHHhccHHHHHhCCCccc------chhhccccccchhHHHhh
Q 004826 539 PQDTVLFNDTIFHNIRYGRLSATE--EEVYDA------ARRAAIHDTIMNFPAKYS------TVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~sd--eei~~A------~~~a~l~~~I~~LP~G~d------T~vgE~G~~~~~~~~~~~ 604 (728)
+|++..+..|+.+++.-+...... .++... .....++.....+ ++++ ..+..-|.. .
T Consensus 70 ~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~lgl~--------~ 140 (638)
T PRK10636 70 NQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAI-DAWTIRSRAASLLHGLGFS--------N 140 (638)
T ss_pred ecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHhCCCC--------c
Confidence 998766666777666422100000 000000 0000000000000 0110 001011110 0
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~Ii 683 (728)
. ...-.+.+||||||||++|||||+.+|+||||||||++||+++-..+.+.|++. +.|+|+|||+...+.. ||+|+
T Consensus 141 ~-~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~ 217 (638)
T PRK10636 141 E-QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKII 217 (638)
T ss_pred h-hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEE
Confidence 0 001112349999999999999999999999999999999999999999999875 5799999999998865 99999
Q ss_pred EEeCCEEEE-EcChHHHhh
Q 004826 684 VLENGKVIE-QGSHDDLLT 701 (728)
Q Consensus 684 Vld~G~Ive-~Gth~eLl~ 701 (728)
+|++|+++. .|++++.+.
T Consensus 218 ~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 218 HIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 999999974 788877764
No 350
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=280.61 Aligned_cols=204 Identities=26% Similarity=0.425 Sum_probs=174.4
Q ss_pred CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCC--C-c
Q 004826 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL--F-N 546 (728)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~L--F-~ 546 (728)
.++++|+++||+|+.|++|-|+|.+|||||||++.|+|-..|++|+|+|||+|+..++...--..++-|+|||-. + +
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 457899999999999999999999999999999999999999999999999999999999999999999999963 4 4
Q ss_pred ccHHHHHHcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHH
Q 004826 547 DTIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQ 621 (728)
Q Consensus 547 gTIreNI~~g~~~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQ 621 (728)
-||.||+.++... .+. -...-+...-.+-+..+|.|++-.++.+=-. |||||||
T Consensus 97 lTieENl~la~~Rg~~rgl~~--~ln~~~~~~f~~~l~~l~lgLenrL~~~igl-------------------LSGGQRQ 155 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSS--ALNERRRSSFRERLARLGLGLENRLSDRIGL-------------------LSGGQRQ 155 (263)
T ss_pred ccHHHHHHHHHhcCcccccch--hhhHHHHHHHHHHHhhcccchhhhhcChhhh-------------------ccchHHH
Confidence 5999999887431 221 1122334445567889999998888876555 9999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH-HhhcCeEEEEeCCEEEEEc
Q 004826 622 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT-AMQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 622 RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst-i~~aD~IiVld~G~Ive~G 694 (728)
=++++-|-++.|+||+|||-|+||||.+...|++.=.+.- .+-|+++|||.+.. +..-+|.|||++|+||-+=
T Consensus 156 alsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 156 ALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999999997644432 45799999999976 5567999999999999653
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1e-33 Score=331.93 Aligned_cols=208 Identities=25% Similarity=0.416 Sum_probs=157.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+||||+|++|+++|||||||||||||+++|+|+++|++|+|.++|. . .+++
T Consensus 3 ~l~i~~ls~~~~-~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-~----------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFS-DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-L----------IVAR 70 (635)
T ss_pred EEEEeeEEEEeC-CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-C----------EEEE
Confidence 389999999996 467999999999999999999999999999999999999999999999873 1 3688
Q ss_pred EcCCCCC-CcccHHHHHHcCCCCC-----------------CHHH-HHHHHH-------------HhccHHHHHhCCCcc
Q 004826 538 VPQDTVL-FNDTIFHNIRYGRLSA-----------------TEEE-VYDAAR-------------RAAIHDTIMNFPAKY 585 (728)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~~-----------------sdee-i~~A~~-------------~a~l~~~I~~LP~G~ 585 (728)
++|++.. ..+|+.+++..+.... +.++ +....+ ...+.+.+..+ |+
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl 148 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--GL 148 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--CC
Confidence 8887643 2367777764321100 0001 100000 00111112221 11
Q ss_pred cchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCe
Q 004826 586 STVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRT 665 (728)
Q Consensus 586 dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~T 665 (728)
+ ..-....||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|
T Consensus 149 ~---------------------~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~t 205 (635)
T PRK11147 149 D---------------------PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGS 205 (635)
T ss_pred C---------------------CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCE
Confidence 0 01112349999999999999999999999999999999999999999999886 369
Q ss_pred EEEeccCchHHhh-cCeEEEEeCCEEEE-EcChHHHhhc
Q 004826 666 SIFIAHRLTTAMQ-CDEIIVLENGKVIE-QGSHDDLLTK 702 (728)
Q Consensus 666 vIvIaHRLsti~~-aD~IiVld~G~Ive-~Gth~eLl~~ 702 (728)
+|+|||+...+.. ||+|++|++|+++. .|++++.++.
T Consensus 206 vlivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~~ 244 (635)
T PRK11147 206 IIFISHDRSFIRNMATRIVDLDRGKLVSYPGNYDQYLLE 244 (635)
T ss_pred EEEEeCCHHHHHHhcCeEEEEECCEEEEecCCHHHHHHH
Confidence 9999999998865 99999999999985 5998877653
No 352
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-34 Score=361.40 Aligned_cols=209 Identities=26% Similarity=0.398 Sum_probs=171.1
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc-c
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-D 547 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~-g 547 (728)
+++|+|+|++|+|||.++|+||||||||||+|+|+|+++|+ +|+|.+||+++.+.. .|+.++||+|+..+|. -
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999987764 3788999999987775 5
Q ss_pred cHHHHHHcCCC------------CCCHH----------HHH---HHHHHhc------cHHHHH--hCCCcccchhhcccc
Q 004826 548 TIFHNIRYGRL------------SATEE----------EVY---DAARRAA------IHDTIM--NFPAKYSTVVGERGL 594 (728)
Q Consensus 548 TIreNI~~g~~------------~~sde----------ei~---~A~~~a~------l~~~I~--~LP~G~dT~vgE~G~ 594 (728)
|++|||.|+.. +.+.+ ++. +++...+ .++.++ .|.+-.||.||+...
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 99999987521 01111 111 1111111 122332 455667899987654
Q ss_pred ccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccC
Q 004826 595 KGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHR 672 (728)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHR 672 (728)
+ .||||||||++|||||+.+|++|+|||||++||+.+...|.+.|+++. .++|+|+++|.
T Consensus 335 r------------------glSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hq 396 (1470)
T PLN03140 335 R------------------GISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQ 396 (1470)
T ss_pred c------------------CCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 3 299999999999999999999999999999999999999999999875 47999999999
Q ss_pred c--hHHhhcCeEEEEeCCEEEEEcChHHHhh
Q 004826 673 L--TTAMQCDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 673 L--sti~~aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
. .+...+|+|++|++|+++.+|+.+++++
T Consensus 397 p~~~i~~lfD~vilL~~G~ivy~G~~~~~~~ 427 (1470)
T PLN03140 397 PAPETFDLFDDIILLSEGQIVYQGPRDHILE 427 (1470)
T ss_pred CCHHHHHHhheEEEeeCceEEEeCCHHHHHH
Confidence 6 3567799999999999999999998863
No 353
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5e-34 Score=270.64 Aligned_cols=213 Identities=27% Similarity=0.435 Sum_probs=176.3
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCC-CCc-----
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV-LFN----- 546 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~-LF~----- 546 (728)
.+.+.|||+.++|+++||+|.+|||||||+|+|.|..+|++|+|++||+++.-=+.+.-.++|-+++|||. -||
T Consensus 27 ~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~i 106 (267)
T COG4167 27 EAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRI 106 (267)
T ss_pred hcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhh
Confidence 58899999999999999999999999999999999999999999999999988888888889999999984 233
Q ss_pred cc-----HHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHH
Q 004826 547 DT-----IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQ 621 (728)
Q Consensus 547 gT-----IreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQ 621 (728)
|+ ++-|=.+ .|....++|.+-++.+|+.+.-..+ ...+||-||||
T Consensus 107 GqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL~Pdhan~-----------------------------~~~~la~~QKQ 156 (267)
T COG4167 107 GQILDFPLRLNTDL-EPEQRRKQIFETLRMVGLLPDHANY-----------------------------YPHMLAPGQKQ 156 (267)
T ss_pred hhHhcchhhhcccC-ChHHHHHHHHHHHHHhccCcccccc-----------------------------chhhcCchhHH
Confidence 22 2223222 2334567789999999885422111 11249999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH--cCCCeEEEeccCchHHhh-cCeEEEEeCCEEEEEcChHH
Q 004826 622 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDD 698 (728)
Q Consensus 622 RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l--~~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~Gth~e 698 (728)
|+|+||||+-+|+|+|-|||..+||.....++.+-.-++ ..|-.-|.|+..+-.+++ +|+|+||++|++||.|+..|
T Consensus 157 RVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~ 236 (267)
T COG4167 157 RVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTAD 236 (267)
T ss_pred HHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhh
Confidence 999999999999999999999999999999988765443 357899999999999998 99999999999999999999
Q ss_pred Hhhc--cchHHHHHHhhhc
Q 004826 699 LLTK--AGRYAQLWGQQNN 715 (728)
Q Consensus 699 Ll~~--~g~Y~~l~~~q~~ 715 (728)
+++. ...-++|.+....
T Consensus 237 v~a~P~~~~TkRlieShFg 255 (267)
T COG4167 237 VLASPLHELTKRLIESHFG 255 (267)
T ss_pred hhcCCccHHHHHHHHHHhc
Confidence 9975 3556777776544
No 354
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=281.17 Aligned_cols=207 Identities=31% Similarity=0.472 Sum_probs=169.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia 536 (728)
-|+|+||++.|. ++++|+|||++|+|||.-+|+|++|||||||++++.+.++|++|.+.+-|+....-+. .++|++||
T Consensus 31 li~l~~v~v~r~-gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 31 LIELKNVSVRRN-GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred eEEecceEEEEC-CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 599999999994 7899999999999999999999999999999999999999999999999999988887 99999999
Q ss_pred EEcCC---CCCCcccHHHHHHc------CCC--CCCHHHHHHHH---HHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 537 VVPQD---TVLFNDTIFHNIRY------GRL--SATEEEVYDAA---RRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 537 ~V~Qd---~~LF~gTIreNI~~------g~~--~~sdeei~~A~---~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
+|+-+ -+.=+.+++|=+.= |.. ..++++..+|- +..++.+.. ++=
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la------------~r~--------- 168 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA------------DRP--------- 168 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhc------------cCc---------
Confidence 99843 23335566665522 211 45555554432 222332211 110
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc---CCCeEEEeccCchHHhh-
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA---NNRTSIFIAHRLTTAMQ- 678 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~---~~~TvIvIaHRLsti~~- 678 (728)
+..||-|||||+-|||||+++|++|||||||++||...-+...+.|.++. .+.|+|+|||....+..
T Consensus 169 ---------~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~ 239 (257)
T COG1119 169 ---------FGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPC 239 (257)
T ss_pred ---------hhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccc
Confidence 12399999999999999999999999999999999999999999988765 35899999999987755
Q ss_pred cCeEEEEeCCEEEEEcC
Q 004826 679 CDEIIVLENGKVIEQGS 695 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gt 695 (728)
.++++.+++|+++.+|.
T Consensus 240 ~th~lll~~g~v~~~g~ 256 (257)
T COG1119 240 FTHRLLLKEGEVVAQGK 256 (257)
T ss_pred cceEEEeeCCceeeccc
Confidence 69999999999998874
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.6e-34 Score=330.96 Aligned_cols=193 Identities=21% Similarity=0.311 Sum_probs=159.0
Q ss_pred EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEE-----------ECCEeCCCCCHHH
Q 004826 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLES 530 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~-----------idG~di~~i~~~~ 530 (728)
++++++|.++..+|++++ ++++||++|||||||||||||+|+|+|+++|++|+|. ++|.++.++..+-
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 348999976567999999 9999999999999999999999999999999999998 9999987654221
Q ss_pred --Hhcce----EEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 531 --LRKSI----GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 531 --lR~~I----a~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
.+..+ .+++|.|.+|.+|++||+...+ ..+++.++++..++.+. .|+.+++
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l~~~-------~~~~~~~------------- 212 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGLENI-------LDRDISE------------- 212 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCCchh-------hcCChhh-------------
Confidence 12234 4555667788899999997531 23456666666666432 2333332
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEE
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|+
T Consensus 213 ----------LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~ 282 (590)
T PRK13409 213 ----------LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVH 282 (590)
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999988668999999999998865 89999
Q ss_pred EEeCC
Q 004826 684 VLENG 688 (728)
Q Consensus 684 Vld~G 688 (728)
+|++|
T Consensus 283 vl~~~ 287 (590)
T PRK13409 283 IAYGE 287 (590)
T ss_pred EEeCC
Confidence 99873
No 356
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.3e-32 Score=323.50 Aligned_cols=232 Identities=22% Similarity=0.271 Sum_probs=163.4
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC---CCCCCEEEECCEeCCC--CCH---
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSIRIDGQDICE--VTL--- 528 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly---~p~~G~I~idG~di~~--i~~--- 528 (728)
..|+++||+|+|+ ++++|+|+||+|++|+++||||+||||||||+++|+|.. .|++|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~-~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVG-GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeC-CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 3699999999996 457999999999999999999999999999999999864 5899999876554321 111
Q ss_pred ---------HHHhcceEEEcCCCCCCcccHHHHHHcCC-CCCCHH----HHHHHHHHhccHHHHHhCCCcccchhhcccc
Q 004826 529 ---------ESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (728)
Q Consensus 529 ---------~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~-~~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~ 594 (728)
..+++.+++++|++.+...+..+|+.... ...+.+ ++.++++..++.+. -..+...+..+..-|.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDA-YTAEARAASILAGLSF 333 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHCCC
Confidence 12456689999988765555555542211 111222 23333332222110 0000011111111111
Q ss_pred ccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch
Q 004826 595 KGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674 (728)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs 674 (728)
.. ...++ ...+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++ ++|+|+|||++.
T Consensus 334 ~~-------~~~~~--~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~ 402 (718)
T PLN03073 334 TP-------EMQVK--ATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHARE 402 (718)
T ss_pred Ch-------HHHhC--chhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHH
Confidence 00 00000 11239999999999999999999999999999999999999999999885 689999999999
Q ss_pred HHhh-cCeEEEEeCCEEE-EEcChHHHhh
Q 004826 675 TAMQ-CDEIIVLENGKVI-EQGSHDDLLT 701 (728)
Q Consensus 675 ti~~-aD~IiVld~G~Iv-e~Gth~eLl~ 701 (728)
.+.. ||+|++|++|+++ ..|++++...
T Consensus 403 ~l~~~~d~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 403 FLNTVVTDILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred HHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9876 9999999999996 5788776654
No 357
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=8e-33 Score=320.45 Aligned_cols=219 Identities=35% Similarity=0.542 Sum_probs=185.7
Q ss_pred ceEEEEEEEEEecCC----ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC---CCCEEEECCEeCCCCCHH
Q 004826 457 GSIQFDNVHFSYLTE----RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~----~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p---~~G~I~idG~di~~i~~~ 529 (728)
-.++|+|++..-+.. +.+|+|||.+++|||..||.||||||||||++.|+|--++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 368999999988643 6899999999999999999999999999999999999874 799999999 456778
Q ss_pred HHhcceEEEcCCCCCCcc-cHHHHHHcCC----CC-CCHHHHHHHHHHhccHHHHHhCCCc--ccchhhccccccchhHH
Q 004826 530 SLRKSIGVVPQDTVLFND-TIFHNIRYGR----LS-ATEEEVYDAARRAAIHDTIMNFPAK--YSTVVGERGLKGRSLLY 601 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~g-TIreNI~~g~----~~-~sdeei~~A~~~a~l~~~I~~LP~G--~dT~vgE~G~~~~~~~~ 601 (728)
.+|+..|||+||..++.. ||+|++.|.. |. .+.+|..+ .+++.|.+|..- -||.||..+.+
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~-----~V~~vi~~LgL~~~~~t~ig~~~~r------ 169 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRE-----RVEEVISELGLEKCADTLIGNPGIR------ 169 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCChhhccceecCCCCC------
Confidence 899999999999999965 9999998763 22 24444322 234445555443 67888865432
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchH--Hhh
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQ 678 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLst--i~~ 678 (728)
.+|||||+|++||--|+.||+||+||||||+||+.+..++.+.|+++. +|||||+.=|..+. ...
T Consensus 170 ------------giSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~l 237 (613)
T KOG0061|consen 170 ------------GLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFEL 237 (613)
T ss_pred ------------ccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHH
Confidence 199999999999999999999999999999999999999999999875 58999999999975 567
Q ss_pred cCeEEEEeCCEEEEEcChHHHhh
Q 004826 679 CDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
.|++++|.+|++|-.|+.+++.+
T Consensus 238 FD~l~lLs~G~~vy~G~~~~~~~ 260 (613)
T KOG0061|consen 238 FDKLLLLSEGEVVYSGSPRELLE 260 (613)
T ss_pred HhHhhhhcCCcEEEecCHHHHHH
Confidence 99999999999999999988864
No 358
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=2.6e-33 Score=264.70 Aligned_cols=136 Identities=46% Similarity=0.720 Sum_probs=124.8
Q ss_pred eeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCccc-HHHHH
Q 004826 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT-IFHNI 553 (728)
Q Consensus 475 L~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gT-IreNI 553 (728)
|+||||+|++|++++|+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.++|++|++.+|.+. ++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999875 9999
Q ss_pred HcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCC
Q 004826 554 RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP 633 (728)
Q Consensus 554 ~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p 633 (728)
..++++.++++..++.+ ..++.++.+... ||||||||++|||||+++|
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~-------------------LS~Ge~~rl~la~al~~~~ 127 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASS-------------------LSGGEKQRLALARALLKNP 127 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGG-------------------SCHHHHHHHHHHHHHHTTS
T ss_pred ------ccccccccccccccccc-------ccccccccccch-------------------hhHHHHHHHHHHHHHHcCC
Confidence 34667888888887765 356677777766 9999999999999999999
Q ss_pred CEEEEeCcCc
Q 004826 634 PILLCDEATS 643 (728)
Q Consensus 634 ~ILILDEaTS 643 (728)
++|||||||+
T Consensus 128 ~llllDEPt~ 137 (137)
T PF00005_consen 128 KLLLLDEPTN 137 (137)
T ss_dssp SEEEEESTTT
T ss_pred CEEEEeCCCC
Confidence 9999999996
No 359
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=100.00 E-value=7.9e-29 Score=266.84 Aligned_cols=336 Identities=21% Similarity=0.287 Sum_probs=242.0
Q ss_pred HHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------HHHHHHH
Q 004826 317 DASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTA-M------VLCSHGI 389 (728)
Q Consensus 317 ~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-l------~~g~~~v 389 (728)
.+.......+.|-+.|-.|+-.+.+.++.++..+..........+...++..+-.++.--..+.. + ++..-..
T Consensus 301 ~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKYvWsg~GlvmvsiPI~~~t~~ 380 (728)
T KOG0064|consen 301 YLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGLVMVSIPILTSTLA 380 (728)
T ss_pred HHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCceEEEEeeeeecccC
Confidence 34445567788999999999999999888887776665544433333333222222211100000 0 0000011
Q ss_pred hcCCcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------------cccCC--
Q 004826 390 LSGEMT--------VGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKA-------------DIQDR-- 446 (728)
Q Consensus 390 ~~g~lt--------~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~-------------~~~~~-- 446 (728)
..+... .-+++..-.++......+..+...+.++++-.+.-.|+++.++.-. ++.+.
T Consensus 381 s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~ 460 (728)
T KOG0064|consen 381 SEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRT 460 (728)
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhccC
Confidence 111111 2234444455666677788888888899888888888886653111 10000
Q ss_pred ----CCCCCCCC-----CCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEE
Q 004826 447 ----DNAMPLNL-----KGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR 517 (728)
Q Consensus 447 ----~~~~~~~~-----~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~ 517 (728)
....+.+. ....|.++||-.--|+.+.+...+||+|+||-.+-|.||+|||||+|.+.|.|+|+...|...
T Consensus 461 ~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~ 540 (728)
T KOG0064|consen 461 IDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS 540 (728)
T ss_pred ccccccCCcCCccchhhcccceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeee
Confidence 00011100 113499999988777777889999999999999999999999999999999999999888776
Q ss_pred ECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCC-------CCCCHHHHHHHHHHhccHHHHHhCCCcccchhh
Q 004826 518 IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-------LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG 590 (728)
Q Consensus 518 idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~-------~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vg 590 (728)
+-- +.+|=|+||.|+.=-||+||-|-|-+ .+.+|.|+.+.++.+.++ .|.+-..|+|.+-.
T Consensus 541 ~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~-~i~qr~~g~da~~d 608 (728)
T KOG0064|consen 541 IPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLE-HILQREGGWDAVRD 608 (728)
T ss_pred cCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHH-HHHHhccChhhhcc
Confidence 532 23599999999998999999998865 368899999999999997 46666788887655
Q ss_pred ccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEec
Q 004826 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIA 670 (728)
Q Consensus 591 E~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIa 670 (728)
-... ||||+|||+++||.++.+|+.-+|||+|||+-.+.|..|+++.++ -|-+.|.|+
T Consensus 609 Wkd~--------------------LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsit 666 (728)
T KOG0064|consen 609 WKDV--------------------LSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSIT 666 (728)
T ss_pred HHhh--------------------ccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEee
Confidence 4433 999999999999999999999999999999999999999999987 589999999
Q ss_pred cCchHHhhcCeEEEEe
Q 004826 671 HRLTTAMQCDEIIVLE 686 (728)
Q Consensus 671 HRLsti~~aD~IiVld 686 (728)
||.+..+.-...+-.|
T Consensus 667 hrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 667 HRPSLWKYHTHLLEFD 682 (728)
T ss_pred cCccHHHHHHHHHhcc
Confidence 9999987766665553
No 360
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-31 Score=265.25 Aligned_cols=215 Identities=26% Similarity=0.393 Sum_probs=183.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHH-hcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~~ 534 (728)
-++++|++.+-.+.+++|++|||+|++||+.||.||+|||||||.+.|+|. |++++|+|++||+||.++++++- |.-
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 378899998875436899999999999999999999999999999999996 68999999999999999998774 557
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCCCC---------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGRLS---------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~~~---------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|.+-+|.|.=+.| |+.+=++.+... ...+++.++++..++++.. -+|+.|
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~-----------l~R~vN--------- 142 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF-----------LERYVN--------- 142 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH-----------hhcccC---------
Confidence 9999999999988 887777644211 1245667777777766622 234444
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhc--Ce
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQC--DE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~a--D~ 681 (728)
..||||||.|..|+.+++-+|++.|||||-|+||-.+-+.|-+.++.+. +++++++|||.-..+... |+
T Consensus 143 --------~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~ 214 (251)
T COG0396 143 --------EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDK 214 (251)
T ss_pred --------CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCE
Confidence 4599999999999999999999999999999999999999999998875 579999999998888776 99
Q ss_pred EEEEeCCEEEEEcChHHHhh
Q 004826 682 IIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~ 701 (728)
+.||-+|+||..|.+ ||..
T Consensus 215 vhvl~~GrIv~sG~~-el~~ 233 (251)
T COG0396 215 VHVLYDGRIVKSGDP-ELAE 233 (251)
T ss_pred EEEEECCEEEecCCH-HHHH
Confidence 999999999999999 8875
No 361
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=2.8e-31 Score=299.90 Aligned_cols=223 Identities=27% Similarity=0.388 Sum_probs=166.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++|++++| +++++|+|+||++.+|++++|||++|+|||||+|+|+|..+|++|+|..++- -.|+|
T Consensus 3 ~i~~~~ls~~~-g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~ 70 (530)
T COG0488 3 MITLENLSLAY-GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGY 70 (530)
T ss_pred eEEEeeeEEee-CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEE
Confidence 48999999999 5789999999999999999999999999999999999999999999999862 15999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCCCCH--HHHHHHHH---------HhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLSATE--EEVYDAAR---------RAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~~sd--eei~~A~~---------~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
++|++.+.+. |++|.+..+.....+ .+..++.. .+.++.-... .+||+...-. .-+-.+
T Consensus 71 l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~e~~~--------~~~L~g 141 (530)
T COG0488 71 LSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEE-LDGWTLEARA--------EEALLG 141 (530)
T ss_pred eCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHh-hcccchHHHH--------HHHHhc
Confidence 9999999965 999999887542111 11111110 0111111111 1111111000 000000
Q ss_pred --hcc-CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCe
Q 004826 606 --LER-RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 606 --~~~-~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~ 681 (728)
+.. .-...+||||||-|++|||||+.+|+||+|||||.+||.++-+-+.+-|.+. ++ |+|+|||.-+.+.. |++
T Consensus 142 Lg~~~~~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 142 LGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhh
Confidence 000 1122349999999999999999999999999999999999999999999864 56 99999999999977 899
Q ss_pred EEEEeCCEEE-EEcChHHHhhcc
Q 004826 682 IIVLENGKVI-EQGSHDDLLTKA 703 (728)
Q Consensus 682 IiVld~G~Iv-e~Gth~eLl~~~ 703 (728)
|+-+|.|++. -.|+|+.-+++.
T Consensus 220 I~~ld~g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 220 ILELDRGKLTPYKGNYSSYLEQK 242 (530)
T ss_pred eEEecCCceeEecCCHHHHHHHH
Confidence 9999999874 567887776543
No 362
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=8.6e-32 Score=266.75 Aligned_cols=214 Identities=25% Similarity=0.493 Sum_probs=181.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.+++++|+-+|. ++.+++||||+++||+..+++|++|+||||.+++|+||.+|++|+|.++|.+++. ..++.|||
T Consensus 2 ~L~ie~vtK~Fg-~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFG-DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGY 76 (300)
T ss_pred ceEEecchhccC-ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhccc
Confidence 478999999995 6789999999999999999999999999999999999999999999999998875 46778999
Q ss_pred EcCCCCCCc-ccHHHHHHcCC--CCCCHHHHHHHHHHhccHHHHHhCCC-cccchhhccccccchhHHHhhhhccCCCCC
Q 004826 538 VPQDTVLFN-DTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPA-KYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 538 V~Qd~~LF~-gTIreNI~~g~--~~~sdeei~~A~~~a~l~~~I~~LP~-G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
.|.|--|+. .|+.|-|.|.. ...+.+|+.. .+..|++++.- |+.| .+ | .
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~i~~~~~------~k------I----------k 129 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLEIVGKKT------KK------I----------K 129 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhcccccccc------ch------H----------H
Confidence 999999995 59999998863 2345555432 23446665532 1111 10 1 1
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 691 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv 691 (728)
.||-|-.|+|-+--|++.+|+++|||||.|+|||.+.+.+.+.+.++. +|.|+|+-+||++-++. ||+++.|++|+.|
T Consensus 130 ~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V 209 (300)
T COG4152 130 ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTV 209 (300)
T ss_pred HhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceE
Confidence 299999999999999999999999999999999999999999988765 68999999999999876 9999999999999
Q ss_pred EEcChHHHhhcc
Q 004826 692 EQGSHDDLLTKA 703 (728)
Q Consensus 692 e~Gth~eLl~~~ 703 (728)
-+|+-++..+..
T Consensus 210 ~~G~v~~ir~~~ 221 (300)
T COG4152 210 LYGTVEDIRRSF 221 (300)
T ss_pred EeccHHHHHHhc
Confidence 999988887643
No 363
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=5.7e-31 Score=263.43 Aligned_cols=188 Identities=31% Similarity=0.456 Sum_probs=158.1
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCC--cccH
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF--NDTI 549 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF--~gTI 549 (728)
.++|+||||++++||+++|||++|||||||+|+|+|.|+|++|+|.++|. |+...--..=| +-|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccch
Confidence 36999999999999999999999999999999999999999999999994 33222222223 2489
Q ss_pred HHHHHcCC--CCCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHH
Q 004826 550 FHNIRYGR--LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRV 623 (728)
Q Consensus 550 reNI~~g~--~~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRI 623 (728)
||||.+-. ...+ ++.+.+..+-|+|.||+.. | |. +.|-|.+-||
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~-P------vk-----------------------tYSSGM~aRL 156 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQ-P------VK-----------------------TYSSGMYARL 156 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhC-c------hh-----------------------hccHHHHHHH
Confidence 99995431 2233 4456677778888888753 2 21 2999999999
Q ss_pred HHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH-cCCCeEEEeccCchHHhh-cCeEEEEeCCEEEEEcChHHHhh
Q 004826 624 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 624 aIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
|+|=|.--+|+||||||+.|..|+.=.++=++.++++ .+++|+|+|+|.++.|++ ||++++|++|+|+..|+.+|.++
T Consensus 157 aFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 157 AFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred HHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999999999999999999999888888888887 678999999999999987 99999999999999999999986
Q ss_pred c
Q 004826 702 K 702 (728)
Q Consensus 702 ~ 702 (728)
.
T Consensus 237 ~ 237 (249)
T COG1134 237 A 237 (249)
T ss_pred H
Confidence 4
No 364
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.1e-31 Score=271.50 Aligned_cols=191 Identities=24% Similarity=0.335 Sum_probs=125.4
Q ss_pred CCceeeeeeeEEEeCCcEEEEECCCCccHHHHH-HHHhcCCCCCCCEEEEC-C------EeCCCC---CHHHHhc-ceEE
Q 004826 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL-RLLFRSFDTHSGSIRID-G------QDICEV---TLESLRK-SIGV 537 (728)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~-~LL~gly~p~~G~I~id-G------~di~~i---~~~~lR~-~Ia~ 537 (728)
.+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+ ....++. ..++
T Consensus 6 ~~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (226)
T cd03270 6 AREHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAI 80 (226)
T ss_pred chhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceE
Confidence 355799999999999999999999999999996 4432 13433221 0 011011 1111221 3444
Q ss_pred EcCCCC-CCc-----ccHHHHHHcCC---CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 538 VPQDTV-LFN-----DTIFHNIRYGR---LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 538 V~Qd~~-LF~-----gTIreNI~~g~---~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
..|++. .++ +++.+...+.. +....++..+.++..++.+. .......
T Consensus 81 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~-------------- 136 (226)
T cd03270 81 AIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYL----------TLSRSAP-------------- 136 (226)
T ss_pred EecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcc----------cccCccC--------------
Confidence 445443 111 12222222111 00011111222222222110 1122222
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl 685 (728)
+||||||||++|||||+.+| ++|||||||++||+.+.+.+.+.|+++. ++.|+|+|||+++.++.||+|++|
T Consensus 137 -----~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l 211 (226)
T cd03270 137 -----TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDI 211 (226)
T ss_pred -----cCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEe
Confidence 39999999999999999998 5999999999999999999999998764 579999999999999999999999
Q ss_pred ------eCCEEEEEc
Q 004826 686 ------ENGKVIEQG 694 (728)
Q Consensus 686 ------d~G~Ive~G 694 (728)
++|+|||+|
T Consensus 212 ~~~~~~~~G~iv~~g 226 (226)
T cd03270 212 GPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCccccCCEEEecC
Confidence 999999987
No 365
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=3.6e-31 Score=243.87 Aligned_cols=195 Identities=27% Similarity=0.457 Sum_probs=163.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCCHHHHhcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~i~~~~lR~~ 534 (728)
-+.++||+.+.+ +...|.++||+|.|||++-|.||||||||||+.-+.|+..++ +|++.+|++++..++. -+++
T Consensus 2 ~l~l~nvsl~l~-g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa--~qRq 78 (213)
T COG4136 2 MLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA--AQRQ 78 (213)
T ss_pred ceeeeeeeecCC-CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch--hhhh
Confidence 367899998775 567899999999999999999999999999999999999885 8999999999998874 4689
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGRLS-----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~~~-----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
+|+.+||++||.- |+-+||.|.-|. +......+|+++.+++++..+-|+ .
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~-----------t------------- 134 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPA-----------T------------- 134 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChh-----------h-------------
Confidence 9999999999965 999999998653 334456778888888888877763 1
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHH----HHHHHcCCCeEEEeccCchHHhhcCeEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN----ALKSLANNRTSIFIAHRLTTAMQCDEIIV 684 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~----~L~~l~~~~TvIvIaHRLsti~~aD~IiV 684 (728)
||||||-|+|+-|+|+..|+.|+||||.|.||..-..+..+ .++. .+--+|.|||.+.-+..
T Consensus 135 ------lSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~--agiPtv~VTHD~~Dvpa------ 200 (213)
T COG4136 135 ------LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRA--AGIPTVQVTHDLQDVPA------ 200 (213)
T ss_pred ------cCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHh--cCCCeEEEecccccCCC------
Confidence 99999999999999999999999999999999876555444 3443 57889999999987763
Q ss_pred EeCCEEEEEcC
Q 004826 685 LENGKVIEQGS 695 (728)
Q Consensus 685 ld~G~Ive~Gt 695 (728)
+++|+|.+-
T Consensus 201 --gsrVie~~~ 209 (213)
T COG4136 201 --GSRVIEMAQ 209 (213)
T ss_pred --CCeeeeeeh
Confidence 455555554
No 366
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=250.81 Aligned_cols=214 Identities=23% Similarity=0.401 Sum_probs=179.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC-EeCCCCCHHHH-hcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG-QDICEVTLESL-RKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG-~di~~i~~~~l-R~~I 535 (728)
-++++||+.+++ +-.+|+|+||+|.|||.-+|+||+|+||||++..|.|--+|++|+++++| .|+..++.... |.-|
T Consensus 5 iL~~~~vsVsF~-GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFG-GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEc-ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 478899999986 45699999999999999999999999999999999999999999999999 99999986654 5579
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCCCC--------------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGRLS--------------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~~~--------------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
|-=+|.|..|.. |++||+.+.... ...+.|.+.+...++.+--.. -..
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~-----------~A~------ 146 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDR-----------LAA------ 146 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhh-----------hhh------
Confidence 999999999965 999999765310 111235555555554432111 112
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-c
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-C 679 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-a 679 (728)
+||-||||++.|+--+.++|++|+||||++++-.+..+..-+-|+.+.+.+++++|-|++..++. |
T Consensus 147 -------------~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A 213 (249)
T COG4674 147 -------------LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIA 213 (249)
T ss_pred -------------hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhh
Confidence 29999999999999999999999999999999655555677788888899999999999999977 9
Q ss_pred CeEEEEeCCEEEEEcChHHHhhc
Q 004826 680 DEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl~~ 702 (728)
|+|-||..|.|...|+-+|+-+.
T Consensus 214 ~~VTVlh~G~VL~EGsld~v~~d 236 (249)
T COG4674 214 DKVTVLHEGSVLAEGSLDEVQND 236 (249)
T ss_pred heeEEEeccceeecccHHHhhcC
Confidence 99999999999999999988654
No 367
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=1.3e-29 Score=286.49 Aligned_cols=204 Identities=32% Similarity=0.457 Sum_probs=176.9
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
.-++++||+|+|++++++++++||.|.+|++||||||+|+|||||+|+|+|-..|.+|+|.++-. -+||
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ig 388 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIG 388 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEE
Confidence 46999999999987789999999999999999999999999999999999999999999998641 2699
Q ss_pred EEcCCC-CCC-cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 537 VVPQDT-VLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 537 ~V~Qd~-~LF-~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
|.+|+. .++ +.|+.|++.-+.|+..+.++...+...+....-. .++|+.
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~------~~~v~~----------------------- 439 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQ------EKPVGV----------------------- 439 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHH------hCchhh-----------------------
Confidence 999998 444 4499999988887766888988888887754322 233332
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCEEEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIEQ 693 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive~ 693 (728)
||||||-|+.+|+.++.+|.+|||||||..||.+|-..+.++|.... -|+|+|||.-..+.. |++|+++++ ++.+.
T Consensus 440 LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~ 516 (530)
T COG0488 440 LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEF 516 (530)
T ss_pred cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEc
Confidence 99999999999999999999999999999999999999999998853 499999999999987 999999999 88777
Q ss_pred -cChHHHhhcc
Q 004826 694 -GSHDDLLTKA 703 (728)
Q Consensus 694 -Gth~eLl~~~ 703 (728)
|+|++-++..
T Consensus 517 ~g~y~~y~~~~ 527 (530)
T COG0488 517 EGGYEDYLEQK 527 (530)
T ss_pred CCCHHHHHHhh
Confidence 8888876543
No 368
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.6e-30 Score=270.70 Aligned_cols=194 Identities=24% Similarity=0.343 Sum_probs=140.9
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh-----c-CCC----CCCC-----------EEEECCEeCCCCCHH--
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-----R-SFD----THSG-----------SIRIDGQDICEVTLE-- 529 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~-----g-ly~----p~~G-----------~I~idG~di~~i~~~-- 529 (728)
..|+|||++||.|+.++|+|.||||||||++-++ + ++. |..+ -|.+|..||..-+..
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999998552 1 222 3333 355666555432211
Q ss_pred --------HHhc----------------ceEEEcCCCC-CCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCc
Q 004826 530 --------SLRK----------------SIGVVPQDTV-LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (728)
Q Consensus 530 --------~lR~----------------~Ia~V~Qd~~-LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G 584 (728)
.+|+ .+.|..++.. +.+-|+.||+.|.......++..++++..++
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL---------- 158 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGL---------- 158 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCC----------
Confidence 1111 1334444443 2345777777665422222333333333333
Q ss_pred ccc-hhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCcCcCCCHHHHHHHHHHHHHH
Q 004826 585 YST-VVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKA---PPILLCDEATSALDSTTEAEILNALKSL 660 (728)
Q Consensus 585 ~dT-~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~---p~ILILDEaTSaLD~~tE~~I~~~L~~l 660 (728)
+. .+++.... ||||||||++|||||.++ |+++||||||++||+.+.+.+.+.|+++
T Consensus 159 -~~l~l~~~~~~-------------------LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l 218 (261)
T cd03271 159 -GYIKLGQPATT-------------------LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218 (261)
T ss_pred -chhhhcCcccc-------------------CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 22 24555555 999999999999999996 7999999999999999999999999887
Q ss_pred c-CCCeEEEeccCchHHhhcCeEEEE------eCCEEEEEcCh
Q 004826 661 A-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSH 696 (728)
Q Consensus 661 ~-~~~TvIvIaHRLsti~~aD~IiVl------d~G~Ive~Gth 696 (728)
. ++.|+|+|+|++..++.||+|++| ++|+|+++|++
T Consensus 219 ~~~g~tvIiitH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 219 VDKGNTVVVIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HhCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 5 479999999999999999999999 89999999974
No 369
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.96 E-value=4.8e-30 Score=257.89 Aligned_cols=164 Identities=26% Similarity=0.354 Sum_probs=133.4
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCC---------CEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc
Q 004826 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---------GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (728)
Q Consensus 476 ~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~---------G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~ 546 (728)
++++|++++| .++|+||||||||||++.|.++..|.. |++.++|.++... ..+++|++|+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999986653 4688888876542 3468899999999988
Q ss_pred ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHH
Q 004826 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALA 626 (728)
Q Consensus 547 gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIA 626 (728)
|+. ..++++.++++. ++-.+..+. . ||||||||++||
T Consensus 89 --------~~~--~~~~~~~~~l~~----------~~~~~~~~~----~-------------------LS~G~kqrl~la 125 (197)
T cd03278 89 --------YSI--ISQGDVSEIIEA----------PGKKVQRLS----L-------------------LSGGEKALTALA 125 (197)
T ss_pred --------eeE--EehhhHHHHHhC----------CCccccchh----h-------------------cCHHHHHHHHHH
Confidence 322 123445555444 222233222 2 999999999999
Q ss_pred HHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeC
Q 004826 627 RAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 627 RALl----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
||+. ++|++++|||||++||+++...+.+.|+++.++.|+|+|||+++.++.||+++.+..
T Consensus 126 ~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 126 LLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9986 577999999999999999999999999998888999999999999999999998853
No 370
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.5e-29 Score=254.67 Aligned_cols=211 Identities=26% Similarity=0.428 Sum_probs=157.3
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEc-CCCCCC-cccHH
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP-QDTVLF-NDTIF 550 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~-Qd~~LF-~gTIr 550 (728)
++.+||||+||||++++++|++|+||||++|+|.|+..|++|.|+++|.+=.+= .++.-+++++|. |-..|. .--+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~-~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRR-REEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchh-HHHHHHHHHHHhhhhheeeeechhh
Confidence 589999999999999999999999999999999999999999999999865553 334444555554 322221 11122
Q ss_pred HHHHcCC--CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHH
Q 004826 551 HNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARA 628 (728)
Q Consensus 551 eNI~~g~--~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARA 628 (728)
|-+..-+ -+++|++..+-. ..+++-| +++..+-..=.. ||=|||-|..||-|
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~-----~~l~eiL--dl~~~lk~~vr~-------------------LSlGqRmraeLaaa 170 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERL-----DFLTEIL--DLEGFLKWPVRK-------------------LSLGQRMRAELAAA 170 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHH-----HHHHHHh--cchhhhhhhhhh-------------------ccchHHHHHHHHHH
Confidence 2221111 024444332211 1111111 233333333333 99999999999999
Q ss_pred hccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH--cCCCeEEEeccCchHHh-hcCeEEEEeCCEEEEEcChHHHhhccch
Q 004826 629 FLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAM-QCDEIIVLENGKVIEQGSHDDLLTKAGR 705 (728)
Q Consensus 629 Ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l--~~~~TvIvIaHRLsti~-~aD~IiVld~G~Ive~Gth~eLl~~~g~ 705 (728)
||++|+||.|||||=+||..+...|.+.|++. ..++|++..||-++-|. -||||+++++|+++-.|+-++|.++-|.
T Consensus 171 LLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 171 LLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGP 250 (325)
T ss_pred hcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCC
Confidence 99999999999999999999999999999764 46899999999999875 4999999999999999999999988777
Q ss_pred HHHHH
Q 004826 706 YAQLW 710 (728)
Q Consensus 706 Y~~l~ 710 (728)
|++++
T Consensus 251 ~k~~~ 255 (325)
T COG4586 251 YKEFS 255 (325)
T ss_pred ceEEE
Confidence 76553
No 371
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.6e-29 Score=239.24 Aligned_cols=187 Identities=24% Similarity=0.403 Sum_probs=156.1
Q ss_pred EEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcC
Q 004826 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (728)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q 540 (728)
.+|++..- +++.++.++||++.|||.+-|+||+|||||||+++|+|+.+|++|+|+++|.+++.... +.++.+-|.--
T Consensus 5 a~~L~~~R-~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-~~~~~l~yLGH 82 (209)
T COG4133 5 AENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-SYHQALLYLGH 82 (209)
T ss_pred hhhhhhcc-CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-hHHHHHHHhhc
Confidence 34444332 35689999999999999999999999999999999999999999999999999988654 34777888877
Q ss_pred CCCCC-cccHHHHHHcCCC---CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 541 DTVLF-NDTIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 541 d~~LF-~gTIreNI~~g~~---~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
.+-+= .-|+.||+.|+.. ..+++.+++|+..+++.++ +++|-++ ||
T Consensus 83 ~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp~~~-----------------------------LS 132 (209)
T COG4133 83 QPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLPVGQ-----------------------------LS 132 (209)
T ss_pred cccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccchhh-----------------------------cc
Confidence 77665 4599999999864 2457889999999999874 4445433 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH-cCCCeEEEeccCchHHhhc
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL-ANNRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l-~~~~TvIvIaHRLsti~~a 679 (728)
-||+.|+||||-.+..+|+.||||||+|||.+.++.+-.-+... .+|-.||..||..-.+..+
T Consensus 133 AGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~a 196 (209)
T COG4133 133 AGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIASA 196 (209)
T ss_pred hhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCcc
Confidence 99999999999999999999999999999999998888777654 4678889999987666443
No 372
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=2.5e-29 Score=256.02 Aligned_cols=192 Identities=18% Similarity=0.175 Sum_probs=147.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEe-CCcEEEEECCCCccHHHHHHHHh-cCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVP-AGKSVAIVGTSGSGKSTILRLLF-RSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~-~Ge~vAIVG~SGSGKSTL~~LL~-gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
.|+++|+. +|.+. ++|+|+.. +|++++|+|+||||||||+++|. .+|.+..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 68999988 77543 56777654 58999999999999999999999 5787777777665 233445556678889
Q ss_pred EEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCc-ccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK-YSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G-~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
++++|++. ....+++++ ..+.+++.+... ++.| +++.+......
T Consensus 79 ~~~f~~~~----~~~~~~r~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~------------------- 123 (213)
T cd03279 79 SFTFQLGG----KKYRVERSR--GLDYDQFTRIVL----------LPQGEFDRFLARPVST------------------- 123 (213)
T ss_pred EEEEEECC----eEEEEEEec--CCCHHHHHHhhh----------hhhcchHHHhcCCccc-------------------
Confidence 99999983 333334444 455555544321 2222 44445555555
Q ss_pred CChhHHHHHHHHHHhcc----------CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cCeE
Q 004826 615 LSGGEKQRVALARAFLK----------APPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 615 LSGGQrQRIaIARALl~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD~I 682 (728)
||||||||++||||++. +|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|
T Consensus 124 lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i 203 (213)
T cd03279 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRL 203 (213)
T ss_pred cCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEE
Confidence 99999999999999974 6789999999999999999999999988865 7899999999997765 7999
Q ss_pred EEEeCCEE
Q 004826 683 IVLENGKV 690 (728)
Q Consensus 683 iVld~G~I 690 (728)
++|++|-+
T Consensus 204 ~~~~~~~~ 211 (213)
T cd03279 204 EVIKTPGG 211 (213)
T ss_pred EEEecCCC
Confidence 99999864
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=8e-29 Score=257.22 Aligned_cols=192 Identities=25% Similarity=0.331 Sum_probs=142.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh----------------cCCCCCCC-------
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF----------------RSFDTHSG------- 514 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~----------------gly~p~~G------- 514 (728)
+|+++|.- +|. +..++.+++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nfk-sy~-~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 3 QVIIQGFK-SYK-DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEEeCcc-Ccc-cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 46666521 253 456777876 7899999999999999999998 44555566
Q ss_pred -EEEECCEeCCCC---CHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHH--HhCCCcccch
Q 004826 515 -SIRIDGQDICEV---TLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTI--MNFPAKYSTV 588 (728)
Q Consensus 515 -~I~idG~di~~i---~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I--~~LP~G~dT~ 588 (728)
+|.+++.+-... ....+++.++++||++.++. ..++.+|++.+++..++.+.- ..+|+|..+.
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------KNVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------eEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 666665322111 22345667888887765533 235778888888888775421 1134454333
Q ss_pred h-------hccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHH
Q 004826 589 V-------GERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNAL 657 (728)
Q Consensus 589 v-------gE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl----~~p~ILILDEaTSaLD~~tE~~I~~~L 657 (728)
+ .+.+.. ||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|
T Consensus 145 l~~l~~~~~~~~~~-------------------lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l 205 (243)
T cd03272 145 LTNMKQDEQQEMQQ-------------------LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMI 205 (243)
T ss_pred hhhccccccccccc-------------------cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHH
Confidence 3 233333 9999999999999996 468999999999999999999999999
Q ss_pred HHHcCCCeEEEeccCchHHhhcCeEEEEe
Q 004826 658 KSLANNRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 658 ~~l~~~~TvIvIaHRLsti~~aD~IiVld 686 (728)
+++.+++|+|+++|+.+..+.||+|++|+
T Consensus 206 ~~~~~~~~ii~~~h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 206 KELSDGAQFITTTFRPELLEVADKFYGVK 234 (243)
T ss_pred HHHhCCCEEEEEecCHHHHhhCCEEEEEE
Confidence 99877889999999999889999999986
No 374
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.7e-28 Score=231.41 Aligned_cols=227 Identities=26% Similarity=0.416 Sum_probs=171.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC-----EeCCCCCHHH--
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG-----QDICEVTLES-- 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG-----~di~~i~~~~-- 530 (728)
-++++++|-.|.+. .-.+||||++.|||..+|||+||||||||++.|.+-..|+.|+|.++- .|+-.++.++
T Consensus 6 LL~V~~lsk~Yg~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 6 LLSVSGLSKLYGPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred ceeehhhhhhhCCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 37889999999643 568999999999999999999999999999999999999999999965 3455555444
Q ss_pred --HhcceEEEcCCCC--C-Cc----ccHHHHH-HcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 531 --LRKSIGVVPQDTV--L-FN----DTIFHNI-RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 531 --lR~~Ia~V~Qd~~--L-F~----gTIreNI-~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
+|..-|+|.|+|- | .. +.|-|-+ +.|..++- +|.+ .+.+|+++.+-..+ .+.+.-..
T Consensus 85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG--~iR~-----~a~~WL~~VEI~~~-RiDD~Prt----- 151 (258)
T COG4107 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG--NIRA-----EAQDWLEEVEIDLD-RIDDLPRT----- 151 (258)
T ss_pred HHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhh--hHHH-----HHHHHHHhcccCcc-cccCcccc-----
Confidence 4455699999994 1 11 1222221 12221111 1211 22355554332221 12222222
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhh
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQ 678 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~ 678 (728)
+|||.+||+-|||-|+..|+++.+||||-+||..-.+++.+-++.+-. +-.+++|||.|..++-
T Consensus 152 --------------FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarL 217 (258)
T COG4107 152 --------------FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARL 217 (258)
T ss_pred --------------cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHH
Confidence 999999999999999999999999999999999999999999988754 5799999999999876
Q ss_pred -cCeEEEEeCCEEEEEcChHHHhhc-cchHHHHHHh
Q 004826 679 -CDEIIVLENGKVIEQGSHDDLLTK-AGRYAQLWGQ 712 (728)
Q Consensus 679 -aD~IiVld~G~Ive~Gth~eLl~~-~g~Y~~l~~~ 712 (728)
|||.+||++|++||+|=-+..+.. .-.|-+|...
T Consensus 218 la~rlmvmk~g~vve~GLTDrvLDDP~hPYTQLLVS 253 (258)
T COG4107 218 LADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLLVS 253 (258)
T ss_pred hhhcceeecCCCEeccccccccccCCCCchHHHHHH
Confidence 999999999999999988877764 5678887653
No 375
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=223.67 Aligned_cols=199 Identities=31% Similarity=0.440 Sum_probs=144.0
Q ss_pred eEEEEEEEEEec----CC--ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC----EeCCCCC
Q 004826 458 SIQFDNVHFSYL----TE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG----QDICEVT 527 (728)
Q Consensus 458 ~I~f~nVsF~Y~----~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG----~di~~i~ 527 (728)
.+..+||+.++. ++ -|||+|+||+++.||+|++-||||||||||++.|-+-|.|++|+|.+-. +|+-.-.
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 467888876663 22 2899999999999999999999999999999999999999999999843 3444444
Q ss_pred H----HHHhcceEEEcCCCCCCc-----ccHHHHH-HcCCCCCCHHHHHHHHHHhccHHHHH--hCCCcccchhhccccc
Q 004826 528 L----ESLRKSIGVVPQDTVLFN-----DTIFHNI-RYGRLSATEEEVYDAARRAAIHDTIM--NFPAKYSTVVGERGLK 595 (728)
Q Consensus 528 ~----~~lR~~Ia~V~Qd~~LF~-----gTIreNI-~~g~~~~sdeei~~A~~~a~l~~~I~--~LP~G~dT~vgE~G~~ 595 (728)
+ +--|+.||||+|=--... +-+.|-+ ..|- +.+.-.+.++ +.+. ++|+
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv---~~~~a~~~a~-----~Ll~rLnlpe------------ 143 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGV---PREVARAKAA-----DLLTRLNLPE------------ 143 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCC---CHHHHHHHHH-----HHHHHcCCCH------------
Confidence 3 345678999999322111 1122222 2232 2222111111 1121 2232
Q ss_pred cchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCch
Q 004826 596 GRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT 674 (728)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLs 674 (728)
++|+-+ ...+||||+||+-|||.++-|-|||+|||||++||+.+.+.+.+-|++.+ +|+.+|=|-|+-+
T Consensus 144 ---------rLW~La-PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDee 213 (235)
T COG4778 144 ---------RLWSLA-PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEE 213 (235)
T ss_pred ---------HHhcCC-CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHH
Confidence 233322 23499999999999999999999999999999999999999999997654 6899999999987
Q ss_pred HHhh-cCeEEEEe
Q 004826 675 TAMQ-CDEIIVLE 686 (728)
Q Consensus 675 ti~~-aD~IiVld 686 (728)
.-+. |||++-|.
T Consensus 214 vre~vadR~~~~~ 226 (235)
T COG4778 214 VREAVADRLLDVS 226 (235)
T ss_pred HHHHHhhheeecc
Confidence 6554 89998774
No 376
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=7.6e-27 Score=243.75 Aligned_cols=188 Identities=21% Similarity=0.249 Sum_probs=137.1
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCC-CCEEEECCE-eCCCCC--HHHHhcceEEEcCCCCC---------C-cccHH
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQ-DICEVT--LESLRKSIGVVPQDTVL---------F-NDTIF 550 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~-di~~i~--~~~lR~~Ia~V~Qd~~L---------F-~gTIr 550 (728)
...++||||||||||||++.|+++..|+ .|+++..|. |+-... ....+..|++++|++.. . .-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999998876 568999887 432211 11234589999999621 1 45888
Q ss_pred HHHHcCCC--------CCCHHHHHHHHHHhccH----HHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 551 HNIRYGRL--------SATEEEVYDAARRAAIH----DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 551 eNI~~g~~--------~~sdeei~~A~~~a~l~----~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
+||.++.. ....+++.++++.+++. .|+ +|+|-=+.+-+.+. ...+. ...||||
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~--i~Qg~v~~~~~~~~----------~~~~~--~~~lS~G 170 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFL--IMQGRITKVLNMGG----------VWKES--LTELSGG 170 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEE--EeehHHHHHHHhHH----------hhccc--ccccCHH
Confidence 88765431 23457788888888774 111 11111111100000 00011 1239999
Q ss_pred HHHHHHHHHHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEe
Q 004826 619 EKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 619 QrQRIaIARALl----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld 686 (728)
||||++|||||. .+|+++||||||++||+.+.+.+.+.|+++.++.|+|+||||.+.++.||+|+-+.
T Consensus 171 ~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 171 QRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 999999999997 68899999999999999999999999999888899999999999999999998764
No 377
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.94 E-value=2.5e-26 Score=277.22 Aligned_cols=219 Identities=24% Similarity=0.430 Sum_probs=188.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC-CHHHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV-TLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i-~~~~lR~~Ia 536 (728)
.+..+|++..|+..+.+.+++||.+++||+.++-|++||||||++|+|.|...|++|++.++|.|+..- +....|+++|
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iG 643 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLG 643 (885)
T ss_pred eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcc
Confidence 588999999998544499999999999999999999999999999999999999999999999999874 4556999999
Q ss_pred EEcCCCCCCcc-cHHHHHHcCC--CCCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~--~~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
|+||+..|+.. |.||.+.+-. ...... .+...++..++.+... ++++
T Consensus 644 yCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~-------~~~~------------------- 697 (885)
T KOG0059|consen 644 YCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYAN-------KQVR------------------- 697 (885)
T ss_pred cCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhc-------cchh-------------------
Confidence 99999999875 9999996642 222322 3555566666655432 2222
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCC-eEEEeccCchHHhh-cCeEEEEeC
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR-TSIFIAHRLTTAMQ-CDEIIVLEN 687 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~-TvIvIaHRLsti~~-aD~IiVld~ 687 (728)
++|||+|.||++|-|++.+|++++|||||+++||.+.+.+.+.+.++.++. -+|..||-++..+. |||+..|.+
T Consensus 698 ----~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~ 773 (885)
T KOG0059|consen 698 ----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVI 773 (885)
T ss_pred ----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeec
Confidence 399999999999999999999999999999999999999999999987754 99999999999887 999999999
Q ss_pred CEEEEEcChHHHhhccchH
Q 004826 688 GKVIEQGSHDDLLTKAGRY 706 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~g~Y 706 (728)
|++...|+.++|-.+-|.+
T Consensus 774 G~l~ciGs~q~LKsrfG~g 792 (885)
T KOG0059|consen 774 GQLRCIGSPQELKSRYGSG 792 (885)
T ss_pred CeeEEecChHHHHhhcCCc
Confidence 9999999999998775554
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=5.3e-27 Score=238.45 Aligned_cols=184 Identities=22% Similarity=0.276 Sum_probs=139.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHh-cceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLR-KSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR-~~Ia 536 (728)
.|+++|.- +|. +..++++++| +.++|+|||||||||++++|. +++|.+.. ..| ++++
T Consensus 5 ~l~l~nfk-~~~-~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i~ 62 (212)
T cd03274 5 KLVLENFK-SYA-GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKLS 62 (212)
T ss_pred EEEEECcc-cCC-CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhHH
Confidence 57788765 664 5679999988 899999999999999999997 34554432 333 6799
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCCCCCHHHH-----HHHHH-----HhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRLSATEEEV-----YDAAR-----RAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~~~sdeei-----~~A~~-----~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
+++|+..++.. |.++++.+.......+.+ ..... ...+ ..+.+||++.++.++ .
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~~----~---------- 127 (212)
T cd03274 63 DLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNIS----N---------- 127 (212)
T ss_pred HHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccchh----h----------
Confidence 99999887664 777777655321111100 00000 0111 235567888777654 2
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCe
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDE 681 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~ 681 (728)
||+|||||++||||++ ++|++++|||||++||+.+.+.+.+.++++.++.|+|+|||+.+..+.||+
T Consensus 128 ---------lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~ 198 (212)
T cd03274 128 ---------LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADR 198 (212)
T ss_pred ---------cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCE
Confidence 9999999999999996 358999999999999999999999999998888999999999988899999
Q ss_pred EEEEeC
Q 004826 682 IIVLEN 687 (728)
Q Consensus 682 IiVld~ 687 (728)
|++|..
T Consensus 199 v~~~~~ 204 (212)
T cd03274 199 LVGIYK 204 (212)
T ss_pred EEEEEe
Confidence 999963
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.93 E-value=2.5e-26 Score=232.30 Aligned_cols=164 Identities=23% Similarity=0.250 Sum_probs=130.5
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHh----cCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCC-----CCCcc-
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF----RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-----VLFND- 547 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~----gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~-----~LF~g- 547 (728)
.++++.+| +++|+||||||||||++.|. |.-.|+.|.+.-+.. .+.....+..|++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~---~i~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPK---LIREGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHH---HHhCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566777 99999999999999999984 888888887762222 223345667899999998 44332
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH-----
Q 004826 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR----- 622 (728)
Q Consensus 548 TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR----- 622 (728)
|+.||+.++. ++++.+.+ .+.... ||+||+||
T Consensus 92 ~~~~~~~~~~----~~~~~~~~--------------------~~~~~~-------------------LS~G~~~~~~la~ 128 (204)
T cd03240 92 AILENVIFCH----QGESNWPL--------------------LDMRGR-------------------CSGGEKVLASLII 128 (204)
T ss_pred hHhhceeeec----hHHHHHHH--------------------hcCccc-------------------cCccHHHHHHHHH
Confidence 9999998752 34443222 222333 99999996
Q ss_pred -HHHHHHhccCCCEEEEeCcCcCCCHHHHH-HHHHHHHHHcC--CCeEEEeccCchHHhhcCeEEEEeCC
Q 004826 623 -VALARAFLKAPPILLCDEATSALDSTTEA-EILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENG 688 (728)
Q Consensus 623 -IaIARALl~~p~ILILDEaTSaLD~~tE~-~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~IiVld~G 688 (728)
++||||+..+|++++|||||++||+++.. .+.+.|+++.+ ++|+|+|||.++.+..||+|++|++.
T Consensus 129 rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~~ 198 (204)
T cd03240 129 RLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEKD 198 (204)
T ss_pred HHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEeeC
Confidence 79999999999999999999999999999 99999988765 78999999999999999999999653
No 380
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.93 E-value=1.7e-25 Score=277.24 Aligned_cols=213 Identities=22% Similarity=0.358 Sum_probs=154.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHH---------HHhcCCCCCCC--------EEEECC
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILR---------LLFRSFDTHSG--------SIRIDG 520 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~---------LL~gly~p~~G--------~I~idG 520 (728)
.++++|++. ..|+|+||+|++||.++|+|+||||||||++ +|.|...+..+ -|.||-
T Consensus 600 ~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 600 TLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred eEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 588998862 3799999999999999999999999999999 56664333221 245554
Q ss_pred EeCCCCCH----------HHHhc---------c-----eEEEcCC------------------C----------------
Q 004826 521 QDICEVTL----------ESLRK---------S-----IGVVPQD------------------T---------------- 542 (728)
Q Consensus 521 ~di~~i~~----------~~lR~---------~-----Ia~V~Qd------------------~---------------- 542 (728)
.++..-.. +++|+ . ..+.+|. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 44433111 13341 1 1122331 1
Q ss_pred ----CCCc-ccHHHHHHcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCcccch-hhccccccchhHHHhhhhccCCC
Q 004826 543 ----VLFN-DTIFHNIRYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTV-VGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 543 ----~LF~-gTIreNI~~g~~~~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~-vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
..+. -||.||+.++..++ +.+++.+.++ .++.+ |++.. .++....
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~v--GL~~l~l~q~~~t---------------- 809 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCSL--GLDYLPLGRPLSS---------------- 809 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHHc--CCcchhhcCcccc----------------
Confidence 1333 38999998874322 1233333321 22222 45443 4555555
Q ss_pred CCCCChhHHHHHHHHHHhc---cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEe-
Q 004826 612 FVSLSGGEKQRVALARAFL---KAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLE- 686 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl---~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld- 686 (728)
||||||||++|||||+ ++|++|||||||++||+.+.+.+.+.|+++. +|.|+|+|+|+++.++.||+|++|+
T Consensus 810 ---LSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p 886 (1809)
T PRK00635 810 ---LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGP 886 (1809)
T ss_pred ---CCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcc
Confidence 9999999999999998 6999999999999999999999999998875 5799999999999999999999996
Q ss_pred -----CCEEEEEcChHHHhhcc
Q 004826 687 -----NGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 687 -----~G~Ive~Gth~eLl~~~ 703 (728)
+|++++.|++++++...
T Consensus 887 ~gg~~~G~iv~~Gtpeel~~~~ 908 (1809)
T PRK00635 887 EGGNLGGYLLASCSPEELIHLH 908 (1809)
T ss_pred CCCCCCCEEEEeCCHHHHHhcc
Confidence 89999999999998654
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.93 E-value=1e-25 Score=269.24 Aligned_cols=92 Identities=32% Similarity=0.506 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHHhccCC---CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE-----
Q 004826 615 LSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL----- 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl----- 685 (728)
||||||||++|||||+++| +++||||||++||+++.+.+.+.|+++. +|.|+|+|+|++..++.||+|++|
T Consensus 831 LSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~~aD~ii~Lgp~~G 910 (943)
T PRK00349 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIKTADWIIDLGPEGG 910 (943)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEecCCcC
Confidence 9999999999999999999 9999999999999999999999998875 579999999999999999999999
Q ss_pred -eCCEEEEEcChHHHhhccchH
Q 004826 686 -ENGKVIEQGSHDDLLTKAGRY 706 (728)
Q Consensus 686 -d~G~Ive~Gth~eLl~~~g~Y 706 (728)
++|+|++.|+++|+.+..+.|
T Consensus 911 ~~~G~Iv~~Gt~~el~~~~~s~ 932 (943)
T PRK00349 911 DGGGEIVATGTPEEVAKVEASY 932 (943)
T ss_pred CCCCEEEEeCCHHHHHhCcccH
Confidence 799999999999998765444
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.93 E-value=2.4e-26 Score=217.17 Aligned_cols=208 Identities=29% Similarity=0.406 Sum_probs=175.3
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
++++||.-+- -|-.+|.++..||.+=+|||+|||||||+.-++|+. |-+|+|.++|.|+..++..+|-++=+|.
T Consensus 4 ~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 4 MQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 5677776432 366789999999999999999999999999999986 7999999999999999999999999999
Q ss_pred cCCC-CCCcccHHHHHHcCCCCCC-HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 539 PQDT-VLFNDTIFHNIRYGRLSAT-EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 539 ~Qd~-~LF~gTIreNI~~g~~~~s-deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
.|+. ..|...+..-+++..|+-+ -+++-+.|..-+++|- +|..=. .||
T Consensus 78 sQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DK-----------L~Rs~~-------------------qLS 127 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDK-----------LGRSTN-------------------QLS 127 (248)
T ss_pred hhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccch-----------hhhhhh-------------------hcC
Confidence 8854 5899999999999988522 2345566666655542 222222 399
Q ss_pred hhHHHHHHHHHHhcc-----C--CCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCch-HHhhcCeEEEEeC
Q 004826 617 GGEKQRVALARAFLK-----A--PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT-TAMQCDEIIVLEN 687 (728)
Q Consensus 617 GGQrQRIaIARALl~-----~--p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLs-ti~~aD~IiVld~ 687 (728)
|||.||+-+|-.++. | .++|+||||-+.||...+..+..-|.++. .|.|+|+-.|+|. |+++||++..+..
T Consensus 128 GGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~r 207 (248)
T COG4138 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKR 207 (248)
T ss_pred cccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhc
Confidence 999999999988875 3 36999999999999999998888887765 5899999999996 8999999999999
Q ss_pred CEEEEEcChHHHhhc
Q 004826 688 GKVIEQGSHDDLLTK 702 (728)
Q Consensus 688 G~Ive~Gth~eLl~~ 702 (728)
|++...|.-+|.+..
T Consensus 208 G~l~~~G~~~eVlt~ 222 (248)
T COG4138 208 GKLLASGRREEVLTP 222 (248)
T ss_pred CeEEeecchhhhcCh
Confidence 999999999999864
No 383
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=8.5e-25 Score=241.71 Aligned_cols=213 Identities=27% Similarity=0.470 Sum_probs=174.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia 536 (728)
.++++|++.. ..++|+||++++||+++|.|--|||+|=+++.|.|..++.+|+|.+||++++--++ +..+.-|+
T Consensus 263 ~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 263 VLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred EEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 4678887643 25889999999999999999999999999999999999999999999998888774 47888999
Q ss_pred EEcCCC----CCCcccHHHHHHcCCC-CCCHH-HHHHHHHHhccHHHHHhCCCc---ccchhhccccccchhHHHhhhhc
Q 004826 537 VVPQDT----VLFNDTIFHNIRYGRL-SATEE-EVYDAARRAAIHDTIMNFPAK---YSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 537 ~V~Qd~----~LF~gTIreNI~~g~~-~~sde-ei~~A~~~a~l~~~I~~LP~G---~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
|||-|- .+...||++||.+... ..+.. -+..+.+.+.+.+++.+|--. .+++++
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~----------------- 400 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG----------------- 400 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh-----------------
Confidence 999764 3557799999988721 11111 245556666677777776432 233333
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVl 685 (728)
+||||-+|++.|||.|..+|+||||||||-++|--+.+.|++.|+++. +|+++|+||-.+..+. .||||+||
T Consensus 401 ------~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm 474 (500)
T COG1129 401 ------TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVM 474 (500)
T ss_pred ------cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEE
Confidence 299999999999999999999999999999999999999999999876 5799999999998765 79999999
Q ss_pred eCCEEEEEcChHH
Q 004826 686 ENGKVIEQGSHDD 698 (728)
Q Consensus 686 d~G~Ive~Gth~e 698 (728)
.+|+|+..=+.++
T Consensus 475 ~~Gri~~e~~~~~ 487 (500)
T COG1129 475 REGRIVGELDREE 487 (500)
T ss_pred ECCEEEEEecccc
Confidence 9999997444433
No 384
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.93 E-value=8.2e-26 Score=245.62 Aligned_cols=193 Identities=26% Similarity=0.389 Sum_probs=164.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|.|.||+|+|+++..+++++||-|.++++||+|||+|+|||||+||++|...|+.|.|.-.-+. .+++
T Consensus 389 vi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~~ 457 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLPR 457 (614)
T ss_pred eEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cchh
Confidence 69999999999877789999999999999999999999999999999999999999998765432 3333
Q ss_pred EcC---CCCCCcccHHHHHHcCCC-CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 538 VPQ---DTVLFNDTIFHNIRYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 538 V~Q---d~~LF~gTIreNI~~g~~-~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
-.| +...++.|.-|++.---+ .-..+++...+...|+.......|- .
T Consensus 458 y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~-----------------------------~ 508 (614)
T KOG0927|consen 458 YNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPM-----------------------------S 508 (614)
T ss_pred hhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccch-----------------------------h
Confidence 334 445678889999855444 3567888889999988765554442 2
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCEEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive 692 (728)
+||+|||-||++||.+++.|.||+|||||++||.++-...-++|.+. .-++|+|+|..-.|.+ |++|.+.+||++..
T Consensus 509 ~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 509 QLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred hcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceee
Confidence 39999999999999999999999999999999999999999999885 3489999999999977 99999999999864
No 385
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.92 E-value=2.8e-25 Score=262.85 Aligned_cols=198 Identities=27% Similarity=0.397 Sum_probs=167.1
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC--CCCCEEEECCEeCCCCCHHHHhcceEEEcCCC-CCCcc
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--THSGSIRIDGQDICEVTLESLRKSIGVVPQDT-VLFND 547 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~--p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~-~LF~g 547 (728)
.+.+|+||+=-++||..+|++|+||||||||++.|+|=-. ..+|+|+|||.+..+ +..++.+|||.|+. ++=.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3579999999999999999999999999999999998643 358999999999876 78999999999855 56667
Q ss_pred cHHHHHHcCC-----CCCCHHH----HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 548 TIFHNIRYGR-----LSATEEE----VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 548 TIreNI~~g~-----~~~sdee----i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
||||-+.|.. ++.+++| |+++.+..++.+. =|..||.-|.. ||..
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~G-------------------Ls~e 933 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSG-------------------LSTE 933 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCC-------------------CCHH
Confidence 9999998873 2455554 3444444444332 56789998866 9999
Q ss_pred HHHHHHHHHHhccCC-CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchH--HhhcCeEEEEe-CCEEEEE
Q 004826 619 EKQRVALARAFLKAP-PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--AMQCDEIIVLE-NGKVIEQ 693 (728)
Q Consensus 619 QrQRIaIARALl~~p-~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLst--i~~aD~IiVld-~G~Ive~ 693 (728)
||.|+.||=-|+.|| .||.||||||+||+++...|.+.++++. .|+|+++-=|..|. .+..|+++.|+ +|+.|-.
T Consensus 934 QRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~ 1013 (1391)
T KOG0065|consen 934 QRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYF 1013 (1391)
T ss_pred HhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEe
Confidence 999999999999999 8999999999999999999999999875 68999999999985 58899999996 5789988
Q ss_pred cChH
Q 004826 694 GSHD 697 (728)
Q Consensus 694 Gth~ 697 (728)
|+..
T Consensus 1014 G~lG 1017 (1391)
T KOG0065|consen 1014 GPLG 1017 (1391)
T ss_pred cCcc
Confidence 8754
No 386
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=6.9e-25 Score=228.46 Aligned_cols=192 Identities=21% Similarity=0.230 Sum_probs=138.9
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEe--CC-----CCCHHHHhcceEEEcCCC--CCCcccHHHHHH--
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD--IC-----EVTLESLRKSIGVVPQDT--VLFNDTIFHNIR-- 554 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d--i~-----~i~~~~lR~~Ia~V~Qd~--~LF~gTIreNI~-- 554 (728)
..++|+||+|||||||+..|.++..+..|+++.++.+ +. ..+.....-.+.+..|++ .++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988888888765421 11 111223333455555653 345556555431
Q ss_pred -cCCCCCCHHHHHHHHHHhccHHHHHh--CCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhcc
Q 004826 555 -YGRLSATEEEVYDAARRAAIHDTIMN--FPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLK 631 (728)
Q Consensus 555 -~g~~~~sdeei~~A~~~a~l~~~I~~--LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~ 631 (728)
+.....+.+++.+.++..+++.+... .|+|.=+.+.+..-.+.+...+ .+||||||||++||||++.
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~----------~~LS~G~k~rl~la~al~~ 172 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDM----------DNLSGGEKTMAALALLFAI 172 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhH----------HHcCHHHHHHHHHHHHHHH
Confidence 22334678888899999998644222 3556555555543210111111 2399999999999999986
Q ss_pred C----CCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhhcCeEEEEeC
Q 004826 632 A----PPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 632 ~----p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
+ |+++||||||++||+.+...+.+.|+++.+ +.|+|+|||+.+.++.||+|++|.+
T Consensus 173 ~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 173 HSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred hccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 4 899999999999999999999999998865 7899999999999999999999864
No 387
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.91 E-value=6.2e-21 Score=196.80 Aligned_cols=273 Identities=21% Similarity=0.311 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 128 ITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKVA 207 (728)
Q Consensus 128 ~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 207 (728)
++++++.++..+..+..|++++.++|.+........ .....+.. .+++..+ +...+.....+...+.+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~ 69 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNN-----SSLISLAF----LLIAIFL---LIFLFSYIYFYLSSRIS 69 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHH-----HHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchh-----hHHHHHHH----HHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 345556666777888899999999998543221100 11111110 1111111 11233444455577899
Q ss_pred HHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 004826 208 LRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITS 287 (728)
Q Consensus 208 ~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l~~i~~ 287 (728)
.++..++|.++++|++++|.++|+++++|++.+++++|.+.++..+...+..++..+..++.. .++++.++|.++++.+
T Consensus 70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~l~l~~l 148 (275)
T PF00664_consen 70 QRIRKDLRKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFS-LILLFFISWKLALILL 148 (275)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhh-hhcccccccccccccc
Confidence 999999999999999999999999999999999999999999888776666666555443332 3445556888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 288 LSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRSLAFLN 367 (728)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (728)
+.++++.++.....+..++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+..+..+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (275)
T PF00664_consen 149 IILPLLFLISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLS 228 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHhhhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777888888888899999999999999999999999999999999999999888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhcCCcCHHHHHHHHHHHHHHHHHH
Q 004826 368 FGQNVIFSAALSTAMVLCSHG-ILSGEMTVGDLVMVNGLLFQLSLPL 413 (728)
Q Consensus 368 ~~~~~i~~~~~~~~l~~g~~~-v~~g~lt~G~l~a~~~~~~~l~~pl 413 (728)
.....+.......++++|+++ +.+|.+|+|+++++..+...+..|+
T Consensus 229 ~~~~~~~~~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 229 SISQFISYLSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 777766666677777889999 9999999999999999999999986
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.2e-23 Score=251.00 Aligned_cols=85 Identities=32% Similarity=0.532 Sum_probs=80.9
Q ss_pred CChhHHHHHHHHHHhcc---CCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE-----
Q 004826 615 LSGGEKQRVALARAFLK---APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL----- 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~---~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl----- 685 (728)
|||||+||++|||||.+ +|+++||||||++||+.+.+.+++.|+++. ++.|+|+|+|++..++.||+|++|
T Consensus 829 LSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii~Lgp~~G 908 (924)
T TIGR00630 829 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYIIDLGPEGG 908 (924)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEecCCcc
Confidence 99999999999999997 599999999999999999999999998875 579999999999999999999999
Q ss_pred -eCCEEEEEcChHHH
Q 004826 686 -ENGKVIEQGSHDDL 699 (728)
Q Consensus 686 -d~G~Ive~Gth~eL 699 (728)
++|+|++.|+++++
T Consensus 909 ~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 909 DGGGTIVASGTPEEV 923 (924)
T ss_pred CCCCEEEEeCCHHHh
Confidence 79999999999886
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.90 E-value=7.7e-23 Score=221.84 Aligned_cols=214 Identities=24% Similarity=0.403 Sum_probs=174.9
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeC-CCCCHHHHhc-c
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI-CEVTLESLRK-S 534 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di-~~i~~~~lR~-~ 534 (728)
.-++++|++..=+.+.+.+++|||++++||+++|.|-+|-|-+-|+.+|+|+..|.+|+|+++|+|+ ...+...+|+ .
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G 335 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLG 335 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcC
Confidence 3589999997644445789999999999999999999999999999999999999999999999997 6678777766 6
Q ss_pred eEEEcCCCC----CCcccHHHHHHcCCCC---------CCHHHHHHHHHHhccHHHHHhC---CCcccchhhccccccch
Q 004826 535 IGVVPQDTV----LFNDTIFHNIRYGRLS---------ATEEEVYDAARRAAIHDTIMNF---PAKYSTVVGERGLKGRS 598 (728)
Q Consensus 535 Ia~V~Qd~~----LF~gTIreNI~~g~~~---------~sdeei~~A~~~a~l~~~I~~L---P~G~dT~vgE~G~~~~~ 598 (728)
+||||.|-+ ...-|+.||+.++.-. .+..++.+.++ +.|+++ +.|-+++++
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~-----~li~~fdVr~~~~~~~a~-------- 402 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFAR-----ELIEEFDVRAPSPDAPAR-------- 402 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHH-----HHHHHcCccCCCCCcchh--------
Confidence 999999873 6778999999887532 22233333332 223331 233333322
Q ss_pred hHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh
Q 004826 599 LLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM 677 (728)
Q Consensus 599 ~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~ 677 (728)
+||||+.||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.. +|+.+++|+-.|+.+.
T Consensus 403 ---------------~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil 467 (501)
T COG3845 403 ---------------SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEIL 467 (501)
T ss_pred ---------------hcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHH
Confidence 399999999999999999999999999999999999999999887654 6899999999999765
Q ss_pred -hcCeEEEEeCCEEEEEcChHH
Q 004826 678 -QCDEIIVLENGKVIEQGSHDD 698 (728)
Q Consensus 678 -~aD~IiVld~G~Ive~Gth~e 698 (728)
-||||.||-+|+|+...+.+|
T Consensus 468 ~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 468 ELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred HhhheeeeeeCCceeccccccc
Confidence 499999999999998877665
No 390
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.88 E-value=5.3e-23 Score=213.00 Aligned_cols=197 Identities=20% Similarity=0.339 Sum_probs=145.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC--EEEECCEeCCCCCHHHHhcce--EEEcCCCCCCcccHHHHHHc
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDICEVTLESLRKSI--GVVPQDTVLFNDTIFHNIRY 555 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~di~~i~~~~lR~~I--a~V~Qd~~LF~gTIreNI~~ 555 (728)
+.|.+||+++|+|++|+|||||++.+.+..+...+ .+.+-...-+..+..++.+.+ .+|-.+ ++.+-...+..
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~---~~~~~~~~~~~ 87 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST---FDEPPERHVQV 87 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEec---CCCCHHHHHHH
Confidence 57899999999999999999999999998887644 333333333335666666655 111110 00111111111
Q ss_pred CCCCCCHHHHHHHHH---Hhc-----cHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhH--------
Q 004826 556 GRLSATEEEVYDAAR---RAA-----IHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE-------- 619 (728)
Q Consensus 556 g~~~~sdeei~~A~~---~a~-----l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQ-------- 619 (728)
. ..+.+.++ ..+ +-|-+.++|++|++.+|+.|.. +||||
T Consensus 88 ~------~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~-------------------~sgG~~~~~~~~~ 142 (249)
T cd01128 88 A------EMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKI-------------------LSGGVDANALHKP 142 (249)
T ss_pred H------HHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCC-------------------CCCCcChhhhhhh
Confidence 0 01111111 111 2366899999999999999988 99999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHH-HHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChH
Q 004826 620 KQRVALARAFLKAPPILLCDEATSALDSTTEAE-ILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697 (728)
Q Consensus 620 rQRIaIARALl~~p~ILILDEaTSaLD~~tE~~-I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~ 697 (728)
+||+++||+++++++|.+| ||+++|+.+|.. ++ ++++. .++|.|+++|||++..++|.|.||+.|++ |+
T Consensus 143 ~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~ 213 (249)
T cd01128 143 KRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KE 213 (249)
T ss_pred HHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cc
Confidence 9999999999999999999 999999877765 54 34443 67999999999999999999999999998 78
Q ss_pred HHhhccchHHHHHHhh
Q 004826 698 DLLTKAGRYAQLWGQQ 713 (728)
Q Consensus 698 eLl~~~g~Y~~l~~~q 713 (728)
+|+..++.|+.++..+
T Consensus 214 ~ll~~~~~~~~~~~~r 229 (249)
T cd01128 214 ELLLDPEELQRMWLLR 229 (249)
T ss_pred hhhCCHHHHHHHHHHH
Confidence 9999999998887655
No 391
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.88 E-value=2.1e-22 Score=202.59 Aligned_cols=172 Identities=17% Similarity=0.154 Sum_probs=118.4
Q ss_pred eeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC-CHHHHhcceEEEcCCCCCCcccHHHHH
Q 004826 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV-TLESLRKSIGVVPQDTVLFNDTIFHNI 553 (728)
Q Consensus 475 L~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i-~~~~lR~~Ia~V~Qd~~LF~gTIreNI 553 (728)
++++++++.+| ..+|+||+|||||||+..|.-.+..... ....|..++++ ....-...|.+++|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35677777777 7799999999999999988643322211 00112211111 01122456888888877665 2
Q ss_pred HcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh----
Q 004826 554 RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF---- 629 (728)
Q Consensus 554 ~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL---- 629 (728)
+ .++.+ .+.+.++++. .+-.+..++ +||||||||++||||+
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-~~~~~~~~~-----------------------~lS~G~k~r~~ia~al~~~~ 128 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-NKAAVRDVK-----------------------TLSGGERSFSTVCLLLSLWE 128 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-ccccCCccc-----------------------ccChhHHHHHHHHHHHHHhc
Confidence 2 22221 1223344433 222232222 2999999999999999
Q ss_pred ccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC----CCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 630 LKAPPILLCDEATSALDSTTEAEILNALKSLAN----NRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 630 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~----~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
+.+|+++||||||++||..+...+.+.|++..+ ++|+|+++|.+..+.+.|+|-||..|+
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 699999999999999999999999999988643 358999999999999999999998754
No 392
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=9.8e-22 Score=212.95 Aligned_cols=194 Identities=26% Similarity=0.376 Sum_probs=164.0
Q ss_pred ceEEEEEEEEEecCCc-eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 457 GSIQFDNVHFSYLTER-KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~-~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
..+++.+|+|.|+++. +.+.+++++++.-+++++||++|+||||++|++.+-..|..|.+-+.+ |.+|
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 4799999999999777 799999999999999999999999999999999999999999998876 5678
Q ss_pred EEEcCCCCCC-cccHH--HHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 536 GVVPQDTVLF-NDTIF--HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 536 a~V~Qd~~LF-~gTIr--eNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
+|-.|.-.=| +-.+- |=..=-.|.-++||+.+.|...|+...+..-| . .
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s--i--------~------------------ 481 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS--I--------A------------------ 481 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc--c--------c------------------
Confidence 9988866533 22221 11111235568999999999988876655432 1 1
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCEEE
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI 691 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv 691 (728)
.||||||=|+++|-..+.+|.+|||||||..||-++-..+-++|++... -||+|||..+.+.. |+.++|.++|+|.
T Consensus 482 -~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~G--GVv~VSHd~~fi~~~c~E~Wvve~g~vt 558 (582)
T KOG0062|consen 482 -SLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNG--GVVLVSHDEEFISSLCKELWVVEDGKVT 558 (582)
T ss_pred -ccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCC--cEEEEECcHHHHhhcCceeEEEcCCcEE
Confidence 2999999999999999999999999999999999999999999988643 69999999999987 9999999999996
Q ss_pred E
Q 004826 692 E 692 (728)
Q Consensus 692 e 692 (728)
-
T Consensus 559 ~ 559 (582)
T KOG0062|consen 559 P 559 (582)
T ss_pred e
Confidence 4
No 393
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.87 E-value=3e-21 Score=210.25 Aligned_cols=220 Identities=21% Similarity=0.298 Sum_probs=145.7
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
..|.++|++++|+ +.++++|..|++.+|++++|+|++||||||+++.+.|--.|..=++-+-=. -+++.+..+..
T Consensus 74 ~dvk~~sls~s~~-g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~a--- 148 (614)
T KOG0927|consen 74 RDVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQA--- 148 (614)
T ss_pred ccceeeeeeeccC-CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHHH---
Confidence 4699999999996 468999999999999999999999999999999999988886655432110 11111111110
Q ss_pred EEcCCCCCCcccHH-------HHHHcCCCCCCH---HHHHHHHHHhccHHHHHhC-----CCcccchhhccccccchhHH
Q 004826 537 VVPQDTVLFNDTIF-------HNIRYGRLSATE---EEVYDAARRAAIHDTIMNF-----PAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 537 ~V~Qd~~LF~gTIr-------eNI~~g~~~~sd---eei~~A~~~a~l~~~I~~L-----P~G~dT~vgE~G~~~~~~~~ 601 (728)
-|....+..+-+ |++.-..++... +++++-+...+.+.+=.+. ..|+....
T Consensus 149 --v~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m------------ 214 (614)
T KOG0927|consen 149 --VQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM------------ 214 (614)
T ss_pred --HHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH------------
Confidence 011111111111 121111111111 1111111111111110000 01111111
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cC
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CD 680 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD 680 (728)
..++. ++||||||-|++|||||+.+|++|+|||||.+||.++-.-+-+-|.+..+. |.++++|--.++.. |.
T Consensus 215 ----~~k~~--~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 215 ----QDKKV--KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCT 287 (614)
T ss_pred ----HHHHh--hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhh
Confidence 22233 459999999999999999999999999999999999999998888875333 89999999999977 99
Q ss_pred eEEEEeCCE-EEEEcChHHHhhc
Q 004826 681 EIIVLENGK-VIEQGSHDDLLTK 702 (728)
Q Consensus 681 ~IiVld~G~-Ive~Gth~eLl~~ 702 (728)
.|+-|++++ +.-.|++++.+..
T Consensus 288 ~Ii~l~~kkl~~y~Gnydqy~~t 310 (614)
T KOG0927|consen 288 NIIHLDNKKLIYYEGNYDQYVKT 310 (614)
T ss_pred hhheecccceeeecCCHHHHhhH
Confidence 999999999 7788999988765
No 394
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.85 E-value=9e-21 Score=202.49 Aligned_cols=181 Identities=25% Similarity=0.388 Sum_probs=136.9
Q ss_pred EEEEEecCCceeeeeeeEEEe-----CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 463 NVHFSYLTERKILDGVSFVVP-----AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~-----~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
+--++|+.-+..+.++.|++. .||.++++||+|-||||++++|+|..+|++|+ ..+ -.|+|
T Consensus 340 ~~lv~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSy 405 (591)
T COG1245 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSY 405 (591)
T ss_pred ceeeecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEee
Confidence 334556654556667777765 56789999999999999999999999999998 211 15999
Q ss_pred EcCCCC-CCcccHHHHHHcCCCC-CCHHHH-HHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 538 VPQDTV-LFNDTIFHNIRYGRLS-ATEEEV-YDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 538 V~Qd~~-LF~gTIreNI~~g~~~-~sdeei-~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
=||-.. -|+|||++=+.-..++ ..+.-. -+.++--++++.+ |.+|.+
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~-------e~~v~~----------------------- 455 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLL-------ERPVDE----------------------- 455 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHH-------hccccc-----------------------
Confidence 999543 4999999887544433 221111 1223333443332 223322
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeC
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN 687 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~ 687 (728)
|||||.||+|||-||.|++++++||||++.||.+..-.+-++|++.. .++|.++|-|.+..+.. +||++|++.
T Consensus 456 LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred CCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999999999999999999999998877778888865 56999999999998866 899999973
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.1e-21 Score=200.78 Aligned_cols=192 Identities=27% Similarity=0.400 Sum_probs=143.4
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
.-+-+.||+|.||+.+|.+++++|-|.--.+||||||+|.|||||++||.|-.+|+.|+.+=+- |=+||
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG 653 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIG 653 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeee
Confidence 3577899999999989999999999999999999999999999999999999999999876553 34688
Q ss_pred EEcCCCC--C-CcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 537 VVPQDTV--L-FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 537 ~V~Qd~~--L-F~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
+.-|..- | -..|-.|-+.-+- +.+-++-..++-.-++..- -+|. . ..
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHTi-------------k---------ik 703 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHTI-------------K---------IK 703 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cceE-------------e---------ee
Confidence 8777542 1 1234444442110 1333444444444333211 1111 0 12
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCe-EEEEeCCEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDE-IIVLENGKVI 691 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~-IiVld~G~Iv 691 (728)
.||||||-|+++|---++.|+||||||||.+||-++-..+-++|+... -.||+|+|.-..|...|. .+|+++-.|-
T Consensus 704 dLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~ 780 (807)
T KOG0066|consen 704 DLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGID 780 (807)
T ss_pred ecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCChh
Confidence 399999999999999999999999999999999999999999998853 479999999888776554 4566665553
No 396
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.84 E-value=1.2e-20 Score=186.75 Aligned_cols=73 Identities=33% Similarity=0.421 Sum_probs=68.4
Q ss_pred CChhHHHHHHHHHHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhhcCeEEEEeC
Q 004826 615 LSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 615 LSGGQrQRIaIARALl----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
||||||||++||||+. .+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+.+.++.||+++++++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 8999999999999984 79999999999999999999999999988754 4899999999999999999999986
No 397
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.1e-20 Score=204.80 Aligned_cols=202 Identities=31% Similarity=0.409 Sum_probs=142.2
Q ss_pred CceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
..+|..+|.+.+|. ++.+|++-++++..|.++++||++|+|||||++.|.. |.|.+-.++ +++|.--
T Consensus 78 ~~Di~~~~fdLa~G-~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG-GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeec-chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheeccc
Confidence 35799999999996 6789999999999999999999999999999999998 433322211 0111110
Q ss_pred EEEcCCCCCCcccHHHHHHcCCCC----CCHHHHHH-HHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 536 GVVPQDTVLFNDTIFHNIRYGRLS----ATEEEVYD-AARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g~~~----~sdeei~~-A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
-...|+ .+-.+|-+.-+..-.+. .+.+||.. ++.-.+..+.....|- +
T Consensus 145 t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt-----------~--------------- 197 (582)
T KOG0062|consen 145 TEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT-----------K--------------- 197 (582)
T ss_pred hHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc-----------c---------------
Confidence 011111 22333434333322211 13345544 5544454444444432 1
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCE
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGK 689 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~ 689 (728)
.||||=|=|+||||||+++|+||+|||||..||..+-.-+.+-|..+. .|+|+|+|.-+.+.. |.-||-+++=|
T Consensus 198 ---slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 198 ---SLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred ---ccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 399999999999999999999999999999999999998888888753 899999999888766 77788888766
Q ss_pred E-EEEcChHHHhhc
Q 004826 690 V-IEQGSHDDLLTK 702 (728)
Q Consensus 690 I-ve~Gth~eLl~~ 702 (728)
+ .-.|++++..++
T Consensus 273 L~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKT 286 (582)
T ss_pred hhhhcCcHHHHHHh
Confidence 5 456777766654
No 398
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.82 E-value=7.9e-20 Score=177.59 Aligned_cols=207 Identities=29% Similarity=0.452 Sum_probs=164.9
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC----CCCCEEEECCEeCCCCCHHHHhc----ceEEEcCCCC
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD----THSGSIRIDGQDICEVTLESLRK----SIGVVPQDTV 543 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~----p~~G~I~idG~di~~i~~~~lR~----~Ia~V~Qd~~ 543 (728)
..+.+++|++...||.-++||+||||||-++|.++|... .+.-+.++|++|+-.+++..-|+ .|++++|||.
T Consensus 20 vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 20 VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred eEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 378999999999999999999999999999999999864 45677889999999999998886 5679999996
Q ss_pred CC-c--cc----HHHHHHcCC---C-----CCCHHHHHHHHHHhccHH--HHH-hCCCcccchhhccccccchhHHHhhh
Q 004826 544 LF-N--DT----IFHNIRYGR---L-----SATEEEVYDAARRAAIHD--TIM-NFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 544 LF-~--gT----IreNI~~g~---~-----~~sdeei~~A~~~a~l~~--~I~-~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
-- + .+ +-+||-.+. . .....+-.+.+.++|+.| .|+ +.|.
T Consensus 100 sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~---------------------- 157 (330)
T COG4170 100 SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPY---------------------- 157 (330)
T ss_pred hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcc----------------------
Confidence 32 2 23 345663221 0 122344456666677643 332 2221
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCeE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~I 682 (728)
.|-.||-|++.||-|+..+|++||-||||.++|+.|..+|+.-|.++. .+.|+++|+|++.++. .||+|
T Consensus 158 --------ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i 229 (330)
T COG4170 158 --------ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKI 229 (330)
T ss_pred --------hhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhhe
Confidence 177888999999999999999999999999999999999999987764 5689999999999885 59999
Q ss_pred EEEeCCEEEEEcChHHHhhc-cchHHH
Q 004826 683 IVLENGKVIEQGSHDDLLTK-AGRYAQ 708 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~-~g~Y~~ 708 (728)
-||-=|+-||.+.-++|++. .-.|-+
T Consensus 230 ~VlYCGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 230 NVLYCGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred EEEEecccccccchhHHhcCCCCchHH
Confidence 99999999999999999975 345643
No 399
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=5.7e-20 Score=194.58 Aligned_cols=76 Identities=26% Similarity=0.353 Sum_probs=71.0
Q ss_pred CCChhHHHHHHHHHHhcc----CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 614 SLSGGEKQRVALARAFLK----APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~----~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
+|||||+||++|||+++. +|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 499999999999997653 9999999999999999999999999999888899999999999999999999999874
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.82 E-value=5e-20 Score=185.83 Aligned_cols=145 Identities=17% Similarity=0.098 Sum_probs=109.5
Q ss_pred eeeeeEEEeCCc-EEEEECCCCccHHHHHHHHh--------cCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCC
Q 004826 475 LDGVSFVVPAGK-SVAIVGTSGSGKSTILRLLF--------RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545 (728)
Q Consensus 475 L~~isl~I~~Ge-~vAIVG~SGSGKSTL~~LL~--------gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF 545 (728)
.-++||++.+|+ .++|+||+|||||||++.|. |++-|....+ .++|+.|.-..
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~~- 78 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFAD- 78 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEEe-
Confidence 457899999996 69999999999999999998 7666653222 23444444211
Q ss_pred cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHH
Q 004826 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVAL 625 (728)
Q Consensus 546 ~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaI 625 (728)
++.+ +. + .+++ .. +|+|+||+..|
T Consensus 79 ---------lg~~----~~-------------l---~~~~--------s~-------------------fs~g~~~~~~i 102 (200)
T cd03280 79 ---------IGDE----QS-------------I---EQSL--------ST-------------------FSSHMKNIARI 102 (200)
T ss_pred ---------cCch----hh-------------h---hcCc--------ch-------------------HHHHHHHHHHH
Confidence 1110 00 0 0111 12 99999999999
Q ss_pred HHHhccCCCEEEEeCcCcCCCHHHHHHHHH-HHHHHc-CCCeEEEeccCchHHhhcCeEEEEeCCEEEEEc
Q 004826 626 ARAFLKAPPILLCDEATSALDSTTEAEILN-ALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 626 ARALl~~p~ILILDEaTSaLD~~tE~~I~~-~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~G 694 (728)
++++ .+|++++|||||+++|+++...+.. .++.+. .++|+|++||.....+.||++++|++|+++..+
T Consensus 103 ~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 103 LQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred HHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9985 8999999999999999999888864 455554 479999999998778889999999999998763
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=5e-20 Score=218.70 Aligned_cols=206 Identities=29% Similarity=0.479 Sum_probs=172.5
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC---CCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc-cc
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT---HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DT 548 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p---~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~-gT 548 (728)
++|+|+|.-++||+.+-+.||.|||||||++.|+|-.+- ..|+|.+||+|.++... ++.++|.+|+...|. -|
T Consensus 129 ~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 129 QILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred eeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccceeE
Confidence 689999999999999999999999999999999997764 35699999999999987 889999999888775 59
Q ss_pred HHHHHHcCC----C-----CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhH
Q 004826 549 IFHNIRYGR----L-----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE 619 (728)
Q Consensus 549 IreNI~~g~----~-----~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQ 619 (728)
+||-|.|.. | +.++.|-.++....-+ -|-.|....||.||.+..+| .||||
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~l--kilGL~~~~dT~VGnd~~RG------------------vSGGe 265 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLL--KILGLDHCADTLVGNDMVRG------------------VSGGE 265 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHH--HHhCchhhccceeccccccc------------------ccCcc
Confidence 999998763 2 2333332221111111 24467789999999987653 99999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCch--HHhhcCeEEEEeCCEEEEEcC
Q 004826 620 KQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLT--TAMQCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 620 rQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLs--ti~~aD~IiVld~G~Ive~Gt 695 (728)
|.|+++|-+++.+|+++.+||+|-+||+.|.-+|.++|+++. -+.|.++.=|..+ +..-.|.|++|.+|++|-+|+
T Consensus 266 rKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp 345 (1391)
T KOG0065|consen 266 RKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGP 345 (1391)
T ss_pred cceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEecc
Confidence 999999999999999999999999999999999999999864 4677777777754 678899999999999999999
Q ss_pred hHHHhh
Q 004826 696 HDDLLT 701 (728)
Q Consensus 696 h~eLl~ 701 (728)
.++.+.
T Consensus 346 ~d~~~~ 351 (1391)
T KOG0065|consen 346 RDEVLP 351 (1391)
T ss_pred HHHHHH
Confidence 998874
No 402
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.80 E-value=1.2e-19 Score=184.58 Aligned_cols=180 Identities=18% Similarity=0.217 Sum_probs=111.8
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCC---CCccc----
Q 004826 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV---LFNDT---- 548 (728)
Q Consensus 476 ~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~---LF~gT---- 548 (728)
+++.++..+| ..+|+|++|||||||+..|.-..-...... . +.-...++-+. =.++.. -|+..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~-----r~~~~~~~i~~---g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-G-----RAKKVGEFVKR---GCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-c-----cccCHHHHhhC---CCCcEEEEEEEEeCCCcc
Confidence 3455555554 568999999999999997754331111100 0 00111111110 011111 11111
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHH
Q 004826 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARA 628 (728)
Q Consensus 549 IreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARA 628 (728)
..+|+.+. .+.+.+.+++..... |.+..+|.+.+.. ..+.. .||||||||+++|++
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~-------------------~LS~G~~q~~~i~~~ 140 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPH-------------------HQSGGERSVSTMLYL 140 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeecCCCcc-ccchh-------------------hccccHHHHHHHHHH
Confidence 23343322 345666666666555 5666777665432 22222 399999999887754
Q ss_pred ----hccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--C-CeEEEeccCchHH-hhcC--eEEEEeCCE
Q 004826 629 ----FLKAPPILLCDEATSALDSTTEAEILNALKSLAN--N-RTSIFIAHRLTTA-MQCD--EIIVLENGK 689 (728)
Q Consensus 629 ----Ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~-~TvIvIaHRLsti-~~aD--~IiVld~G~ 689 (728)
++.+|+++|+||||++||+.+.+.+.+.|++..+ + .|+|+|||++..+ ..|| +|+||++|+
T Consensus 141 la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 141 LSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred HHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 4689999999999999999999999999988754 3 4799999998544 4465 778888775
No 403
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=8.4e-19 Score=198.89 Aligned_cols=93 Identities=32% Similarity=0.506 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHhccCC---CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE-----
Q 004826 615 LSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL----- 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl----- 685 (728)
|||||.|||-||.-|.|+. -++||||||.+|-.+--+++++.|.++. +|.|||+|-|.|..|+.||.|+-|
T Consensus 823 LSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD~IIDLGPeGG 902 (935)
T COG0178 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGG 902 (935)
T ss_pred ccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecCEEEEcCCCCC
Confidence 9999999999999999998 8999999999999999999999988875 689999999999999999999998
Q ss_pred -eCCEEEEEcChHHHhhccchHH
Q 004826 686 -ENGKVIEQGSHDDLLTKAGRYA 707 (728)
Q Consensus 686 -d~G~Ive~Gth~eLl~~~g~Y~ 707 (728)
+.|+||.+||++|+.+..+.|-
T Consensus 903 ~~GG~iva~GTPeeva~~~~S~T 925 (935)
T COG0178 903 DGGGEIVASGTPEEVAKVKASYT 925 (935)
T ss_pred CCCceEEEecCHHHHHhCccchh
Confidence 4799999999999998765553
No 404
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.79 E-value=1.6e-18 Score=168.30 Aligned_cols=206 Identities=23% Similarity=0.377 Sum_probs=153.0
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeC-CCCCH-------
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDI-CEVTL------- 528 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di-~~i~~------- 528 (728)
..|++.++.|+|+...|++-|+|+++|.|.+..+||.+|||||||+|+|.|-.-.-.|.|.+.|.+- .+-++
T Consensus 12 ~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl~ 91 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDLS 91 (291)
T ss_pred ceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCcee
Confidence 4799999999999777999999999999999999999999999999999999888889999999752 22111
Q ss_pred ---HHHhcceEEEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 529 ---ESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 529 ---~~lR~~Ia~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
.+|++..++-- |..|-.+ |. |-+.+|-...+.+.-.+- | +=+|-.+-=|=.+
T Consensus 92 YLGgeW~~~~~~ag-evplq~D~sa-e~mifgV~g~dp~Rre~L---------I----~iLDIdl~WRmHk--------- 147 (291)
T KOG2355|consen 92 YLGGEWSKTVGIAG-EVPLQGDISA-EHMIFGVGGDDPERREKL---------I----DILDIDLRWRMHK--------- 147 (291)
T ss_pred Eecccccccccccc-cccccccccH-HHHHhhccCCChhHhhhh---------h----hheeccceEEEee---------
Confidence 23444443333 2222222 32 223333222222111111 1 1123333333333
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH--cCCCeEEEeccCchHHhh-cCe
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l--~~~~TvIvIaHRLsti~~-aD~ 681 (728)
+|-|||.|+-|+-.||+.=++|+|||.|--||....+.+.+-++.- .+++|++..||=..-++. +.+
T Consensus 148 ----------vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpth 217 (291)
T KOG2355|consen 148 ----------VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTH 217 (291)
T ss_pred ----------ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchh
Confidence 9999999999999999999999999999999999999999998764 378999999999987765 899
Q ss_pred EEEEeCCEEEEEcCh
Q 004826 682 IIVLENGKVIEQGSH 696 (728)
Q Consensus 682 IiVld~G~Ive~Gth 696 (728)
++.|.+|+++..-.+
T Consensus 218 l~yi~~Gkl~~~l~~ 232 (291)
T KOG2355|consen 218 LVYIKSGKLVDNLKY 232 (291)
T ss_pred EEEecCCeeeecccc
Confidence 999999999984443
No 405
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.78 E-value=1.2e-18 Score=184.26 Aligned_cols=179 Identities=27% Similarity=0.484 Sum_probs=138.7
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC--------CCCCCCEEEECCEeCCCCCHHHHhcceEEEcC--CC
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--------FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ--DT 542 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl--------y~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q--d~ 542 (728)
.+|+||||+|+||+.++|||+|||||||++++|+|. |.|++|.|.+--..+. +++|- ||
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~-----------a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS-----------ALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchh-----------hccCccccc
Confidence 589999999999999999999999999999999986 7899999977432211 23333 44
Q ss_pred CCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH
Q 004826 543 VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR 622 (728)
Q Consensus 543 ~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR 622 (728)
.+=.-||-|-+. ..+ -+-..-.+.+..+++.|-+.- -.. +..||-|||-|
T Consensus 466 ~f~~~tilehl~-s~t-GD~~~AveILnraGlsDAvly-----Rr~-----------------------f~ELStGQKeR 515 (593)
T COG2401 466 EFGEVTILEHLR-SKT-GDLNAAVEILNRAGLSDAVLY-----RRK-----------------------FSELSTGQKER 515 (593)
T ss_pred ccCchhHHHHHh-hcc-CchhHHHHHHHhhccchhhhh-----hcc-----------------------HhhcCcchHHH
Confidence 443457877763 111 111223466777887765431 111 12399999999
Q ss_pred HHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh--cCeEEEEeCCEEEE
Q 004826 623 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ--CDEIIVLENGKVIE 692 (728)
Q Consensus 623 IaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~--aD~IiVld~G~Ive 692 (728)
..||+++...|.+++.||.-|.||+.|...+...|.++. .+-|.++||||...+.. -|.++.+-=|++..
T Consensus 516 ~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~ 589 (593)
T COG2401 516 AKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPV 589 (593)
T ss_pred HHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccc
Confidence 999999999999999999999999999999999998887 68999999999998765 49998887776643
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.78 E-value=2.9e-18 Score=213.55 Aligned_cols=211 Identities=22% Similarity=0.304 Sum_probs=145.0
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh------cC---CCCCCCEEEECCEeCCCCC----------HHHHhc
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF------RS---FDTHSGSIRIDGQDICEVT----------LESLRK 533 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~------gl---y~p~~G~I~idG~di~~i~----------~~~lR~ 533 (728)
.-|+||+++||-|..++|.|-||||||||++=.+ .+ ++.-+--|.||-.||..-+ .+.+|+
T Consensus 1504 nNLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~ 1583 (1809)
T PRK00635 1504 HTIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRN 1583 (1809)
T ss_pred ccCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHH
Confidence 3589999999999999999999999999997433 11 2344555888877765544 344555
Q ss_pred ceEEEcC------CCCC--Cc------------ccHHHHHHc-------------------------CCCCCC---HHHH
Q 004826 534 SIGVVPQ------DTVL--FN------------DTIFHNIRY-------------------------GRLSAT---EEEV 565 (728)
Q Consensus 534 ~Ia~V~Q------d~~L--F~------------gTIreNI~~-------------------------g~~~~s---deei 565 (728)
-+|-.|+ .+-. || |.|+=++.| -..++. +-.|
T Consensus 1584 lFA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1584 FYASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HHhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 5543222 1111 11 011111111 000000 0011
Q ss_pred HHHHHH-------hccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccC---CCE
Q 004826 566 YDAARR-------AAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKA---PPI 635 (728)
Q Consensus 566 ~~A~~~-------a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~---p~I 635 (728)
.+|++. +..-+.+.++--||=+ +|+.-.. |||||.|||-||.-|.++ +.+
T Consensus 1664 ~ea~~~F~~~~~i~~~L~~L~~vGLgYl~-LGq~~~t-------------------LSGGE~qRikLa~~l~~~~~~~~l 1723 (1809)
T PRK00635 1664 EEVAETFPFLKKIQKPLQALIDNGLGYLP-LGQNLSS-------------------LSLSEKIAIKIAKFLYLPPKHPTL 1723 (1809)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcCCCeee-CCCcCCc-------------------cCchHHHHHHHHHHHhcCCCCCcE
Confidence 122111 1112233334345544 5776665 999999999999999976 789
Q ss_pred EEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------eCCEEEEEcChHHHhhcc
Q 004826 636 LLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 636 LILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------d~G~Ive~Gth~eLl~~~ 703 (728)
+||||||.+|++..-+.+.+.|+++. .|.|+|+|.|++..++.||.|+-| +.|+||.+||++|+.+..
T Consensus 1724 yilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~ 1798 (1809)
T PRK00635 1724 FLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASK 1798 (1809)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCC
Confidence 99999999999999999999998874 689999999999999999999999 478999999999998754
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.75 E-value=2.6e-18 Score=167.53 Aligned_cols=73 Identities=29% Similarity=0.362 Sum_probs=67.7
Q ss_pred CChhHHHHHHHHHHhcc----CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhhcCeEEEEeC
Q 004826 615 LSGGEKQRVALARAFLK----APPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 615 LSGGQrQRIaIARALl~----~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
||+||+||++|||+|.. +|+++|||||++++|++....+.+.+.+..+ ++|+|++||+......+|++++|+.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999999999999986 7899999999999999999999999887643 5899999999999999999999964
No 408
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=5.7e-18 Score=173.37 Aligned_cols=153 Identities=22% Similarity=0.213 Sum_probs=114.5
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE-EEcCCCCCCcccH
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG-VVPQDTVLFNDTI 549 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia-~V~Qd~~LF~gTI 549 (728)
.+.+.+|+++++++|+.+.|+|||||||||+++.+.- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 4578999999999999999999999999999999981 24455666 7777753222 1
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh
Q 004826 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF 629 (728)
Q Consensus 550 reNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL 629 (728)
.|.| ....++.|. . .++ +|.|++|+..+|+++
T Consensus 73 ~~~i---------------l~~~~l~d~----------~--~~~---------------------lS~~~~e~~~~a~il 104 (222)
T cd03285 73 VDCI---------------LARVGASDS----------Q--LKG---------------------VSTFMAEMLETAAIL 104 (222)
T ss_pred ccee---------------Eeeeccccc----------h--hcC---------------------cChHHHHHHHHHHHH
Confidence 1111 111111111 1 122 999999999999999
Q ss_pred --ccCCCEEEEeCc---CcCCCHHHHHHHH-HHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcC
Q 004826 630 --LKAPPILLCDEA---TSALDSTTEAEIL-NALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 630 --l~~p~ILILDEa---TSaLD~~tE~~I~-~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gt 695 (728)
+.+|+++||||| |+++|+....... +.+.+ ..++|+|++||.....+.||++..+++|++...++
T Consensus 105 ~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 105 KSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred HhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999999999 9999998776544 55543 24799999999755666799999999999987664
No 409
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.72 E-value=5.5e-18 Score=151.76 Aligned_cols=76 Identities=29% Similarity=0.280 Sum_probs=73.0
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 551 (728)
.++|++++|++++||.++|+||||||||||+++++ +|++.++|.|+..++.++.++.++++||+ +|.+||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999987 89999999999999999999999999999 99999999
Q ss_pred HHHc
Q 004826 552 NIRY 555 (728)
Q Consensus 552 NI~~ 555 (728)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9998
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.1e-16 Score=168.89 Aligned_cols=194 Identities=17% Similarity=0.204 Sum_probs=121.9
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-----------------------------------------CCCC
Q 004826 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-----------------------------------------THSG 514 (728)
Q Consensus 476 ~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-----------------------------------------p~~G 514 (728)
++.++++.+| .++|+|+|||||||++..|.-+.. ..+.
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4556777776 688999999999999876532221 0111
Q ss_pred EEEECCEeCCC-CCHHHHhcceEEEcCCCCCCcccHHHHHHcCCC---CCC--HHHHHHHHHHhccHHHHHh---CCCcc
Q 004826 515 SIRIDGQDICE-VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL---SAT--EEEVYDAARRAAIHDTIMN---FPAKY 585 (728)
Q Consensus 515 ~I~idG~di~~-i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~---~~s--deei~~A~~~a~l~~~I~~---LP~G~ 585 (728)
.+.+||..++. -+...+-..|.+.|++..|+.++-.+-..|-+. ... -.+.++..+++ ..-... -|+..
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~g~~~d 169 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKA--LRQRNALLKGPHRD 169 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHhCCCChh
Confidence 45577877765 223344556777888888885544433333221 111 11122222222 111122 35554
Q ss_pred cchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhc---------cCCCEEEEeCcCcCCCHHHHHHHHHH
Q 004826 586 STVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNA 656 (728)
Q Consensus 586 dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl---------~~p~ILILDEaTSaLD~~tE~~I~~~ 656 (728)
|..+.-++.. .-..+|+||||+++|||+|. ++|++++|||||++||+.....+.+.
T Consensus 170 ~l~~~vd~~~---------------~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~ 234 (270)
T cd03242 170 DLLFFLNDKP---------------AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDA 234 (270)
T ss_pred heEEEECCEe---------------HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHH
Confidence 4444333321 01127999999999999974 89999999999999999999999999
Q ss_pred HHHHcCCCeEEEeccCchHHhh-c---CeEEEEeCCEE
Q 004826 657 LKSLANNRTSIFIAHRLTTAMQ-C---DEIIVLENGKV 690 (728)
Q Consensus 657 L~~l~~~~TvIvIaHRLsti~~-a---D~IiVld~G~I 690 (728)
+++.. .+++++|....+.+ | ++|+.+++|+|
T Consensus 235 l~~~~---q~ii~~~~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 235 IEGRV---QTFVTTTDLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred hhcCC---CEEEEeCCchhccchhccCccEEEEeCcEE
Confidence 98742 45555555444433 4 78999999996
No 411
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.70 E-value=6.6e-17 Score=173.17 Aligned_cols=190 Identities=23% Similarity=0.284 Sum_probs=128.0
Q ss_pred EEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEE-----------ECCEeCCCCCHHHH
Q 004826 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIR-----------IDGQDICEVTLESL 531 (728)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~-----------idG~di~~i~~~~l 531 (728)
++.-+|..+...|..+- +.+||+.++|+|++|-||||.+|+|+|-..|+=|+-- +-|..+.++=..-.
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~ 157 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLY 157 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHH
Confidence 45667765444444443 3689999999999999999999999999999988621 11111111111111
Q ss_pred hc------ceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 532 RK------SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 532 R~------~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
-. ++-||.-=|-.+.|+++|=+.--+..-. ..+..+..++.+.+ ...=.
T Consensus 158 ~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~---~devve~l~L~nvl-----------~r~v~----------- 212 (591)
T COG1245 158 EGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGK---FDEVVERLGLENVL-----------DRDVS----------- 212 (591)
T ss_pred cCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCc---HHHHHHHhcchhhh-----------hhhhh-----------
Confidence 11 1223333455666777666543222111 22223333333322 11111
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cCeEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD~Ii 683 (728)
.||||+-||+|||-|++|+++++++|||||-||-...-..-+.++++.+ +++||+|-|.|+.+.. +|-|-
T Consensus 213 --------~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vh 284 (591)
T COG1245 213 --------ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVH 284 (591)
T ss_pred --------hcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeE
Confidence 2999999999999999999999999999999999888777788888877 6999999999999876 88887
Q ss_pred EEe
Q 004826 684 VLE 686 (728)
Q Consensus 684 Vld 686 (728)
++=
T Consensus 285 I~Y 287 (591)
T COG1245 285 ILY 287 (591)
T ss_pred EEe
Confidence 774
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=1.1e-16 Score=192.18 Aligned_cols=88 Identities=27% Similarity=0.448 Sum_probs=83.6
Q ss_pred CChhHHHHHHHHHHhccCC--CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------
Q 004826 615 LSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------ 685 (728)
|||||||||+|||||..+| ++|||||||++||+...+.+.+.|+++. +|.|+|+|+|++..+..||+|++|
T Consensus 490 LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~LgpgaG~ 569 (943)
T PRK00349 490 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDIGPGAGV 569 (943)
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEeccccCC
Confidence 9999999999999999997 9999999999999999999999999875 479999999999999999999999
Q ss_pred eCCEEEEEcChHHHhhc
Q 004826 686 ENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~ 702 (728)
++|+|+.+|+.+|+++.
T Consensus 570 ~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 570 HGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCCEEeeccCHHHHhcC
Confidence 99999999999999764
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.68 E-value=1.2e-16 Score=191.42 Aligned_cols=88 Identities=30% Similarity=0.471 Sum_probs=83.1
Q ss_pred CChhHHHHHHHHHHhccCC--CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------
Q 004826 615 LSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------ 685 (728)
|||||+|||+|||||..+| ++|||||||++||+.+.+.+.+.|+++. +|.|+|+|+|+++.++.||+|++|
T Consensus 488 LSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~LgpgaG~ 567 (924)
T TIGR00630 488 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDIGPGAGI 567 (924)
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEecccccC
Confidence 9999999999999999986 8999999999999999999999998875 479999999999999999999999
Q ss_pred eCCEEEEEcChHHHhhc
Q 004826 686 ENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~ 702 (728)
++|+|+++|+.+++...
T Consensus 568 ~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 568 HGGEVVASGTPEEILAN 584 (924)
T ss_pred CCCEEeeccCHHHHhcC
Confidence 99999999999998653
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.68 E-value=9.6e-17 Score=162.17 Aligned_cols=85 Identities=15% Similarity=0.113 Sum_probs=69.6
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHH-HHHHc-CCCeEEEeccCchHHhhcCeEEEEeCCEEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKVIE 692 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G~Ive 692 (728)
+|++++| +..+-+++.+|+++||||||+++|+.....+... ++.+. .++|+|++||....++.+|++..+++|++.+
T Consensus 92 ~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~ 170 (202)
T cd03243 92 FMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEE 170 (202)
T ss_pred HHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEE
Confidence 7777776 6666778899999999999999999887776554 44332 4789999999999999999999999999998
Q ss_pred EcChHHHh
Q 004826 693 QGSHDDLL 700 (728)
Q Consensus 693 ~Gth~eLl 700 (728)
+++.+++.
T Consensus 171 ~~~~~~~~ 178 (202)
T cd03243 171 LITTGGLT 178 (202)
T ss_pred EecCCeee
Confidence 88754443
No 415
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.67 E-value=1.7e-16 Score=200.06 Aligned_cols=118 Identities=24% Similarity=0.265 Sum_probs=106.5
Q ss_pred CCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHH--
Q 004826 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQ-- 621 (728)
Q Consensus 544 LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQ-- 621 (728)
.|+||++|||.+ +|+++++ +.|++.+++++|+..+|.| ||.++.+| . |||||||
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-------------------lS~Gq~~~~ 1208 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-R-------------------CSAGQKVLA 1208 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCCC-CeecCCCC-C-------------------CchhhhhHh
Confidence 499999999999 8988877 7999999999999999999 99999987 4 9999999
Q ss_pred ----HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc------CCCeEEEeccCchHHhh------cCeEEEE
Q 004826 622 ----RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA------NNRTSIFIAHRLTTAMQ------CDEIIVL 685 (728)
Q Consensus 622 ----RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~------~~~TvIvIaHRLsti~~------aD~IiVl 685 (728)
|++||||++.+|+||+|||||++||+.+...+.+.|.++. .+.|+|+|||++..+.. +|..+-+
T Consensus 1209 ~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1209 SLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred hHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 9999999999999999999999999999999999887763 36899999999998763 5666655
No 416
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.62 E-value=8.1e-16 Score=154.94 Aligned_cols=145 Identities=20% Similarity=0.252 Sum_probs=98.8
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCC-cccH
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTI 549 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF-~gTI 549 (728)
+++|++|++|+. |+.++|+||||||||||++.|.+..- +..+|.++..- .+++|...+| .-|+
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~ 76 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRV 76 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccc
Confidence 356888887665 79999999999999999999987432 22356555321 3666755555 5599
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh
Q 004826 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF 629 (728)
Q Consensus 550 reNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL 629 (728)
+||+.++.. ...++..+ +.+.++.+ | +
T Consensus 77 ~d~l~~~~s-~~~~e~~~------~~~iL~~~-----------~---------------------~-------------- 103 (199)
T cd03283 77 SDDLRDGIS-YFYAELRR------LKEIVEKA-----------K---------------------K-------------- 103 (199)
T ss_pred hhccccccC-hHHHHHHH------HHHHHHhc-----------c---------------------C--------------
Confidence 999988753 22233221 22222221 0 1
Q ss_pred ccCCCEEEEeCcCcCCCHHHHHHHHH-HHHHHc-CCCeEEEeccCchHHhhc---CeEEEE
Q 004826 630 LKAPPILLCDEATSALDSTTEAEILN-ALKSLA-NNRTSIFIAHRLTTAMQC---DEIIVL 685 (728)
Q Consensus 630 l~~p~ILILDEaTSaLD~~tE~~I~~-~L~~l~-~~~TvIvIaHRLsti~~a---D~IiVl 685 (728)
.+|+++||||||+++|+.+...+.. .++.+. ++.|+|++||.+..+... ++|-.+
T Consensus 104 -~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 104 -GEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred -CCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 5899999999999999998876654 355442 478999999999876554 455444
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.61 E-value=2.5e-15 Score=157.60 Aligned_cols=142 Identities=23% Similarity=0.341 Sum_probs=104.8
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC-HHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHH
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT-LESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~-~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdee 564 (728)
+.++|+||+|||||||++.|+|++.|++|+|.++|.++..++ ..++...++++||+..--..++.|| .|. .+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~----~~k---~~ 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDG----CPK---AE 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccccccccccccc----chH---HH
Confidence 689999999999999999999999999999999999998775 5678888999999653222234333 110 00
Q ss_pred HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcC
Q 004826 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSA 644 (728)
Q Consensus 565 i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSa 644 (728)
| -..++|++ +|+++|+|||++
T Consensus 185 ----------------------------~----------------------------~~~~i~~~--~P~villDE~~~- 205 (270)
T TIGR02858 185 ----------------------------G----------------------------MMMLIRSM--SPDVIVVDEIGR- 205 (270)
T ss_pred ----------------------------H----------------------------HHHHHHhC--CCCEEEEeCCCc-
Confidence 0 13445553 899999999984
Q ss_pred CCHHHHHHHHHHHHHHcCCCeEEEeccCchH--H------------hhcCeEEEEeCCEEEEEcChHHHh
Q 004826 645 LDSTTEAEILNALKSLANNRTSIFIAHRLTT--A------------MQCDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 645 LD~~tE~~I~~~L~~l~~~~TvIvIaHRLst--i------------~~aD~IiVld~G~Ive~Gth~eLl 700 (728)
++.+...++.+..|.|+|+++|..+. + ..+||+++|++|+ ..|+.++..
T Consensus 206 -----~e~~~~l~~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 206 -----EEDVEALLEALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred -----HHHHHHHHHHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 23344444444579999999997655 3 3479999999887 667765543
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.55 E-value=1.6e-14 Score=147.44 Aligned_cols=152 Identities=22% Similarity=0.197 Sum_probs=103.3
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc-ccH
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTI 549 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~-gTI 549 (728)
.+.+.+|++|++++ +.++|+|||||||||+++.+.+..-. ++.-...+ ..+..++++.| +|. -++
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--------~~~g~~vp--~~~~~i~~~~~---i~~~~~~ 82 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--------AQIGSFVP--ASKAEIGVVDR---IFTRIGA 82 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--------hccCCeec--cccceecceee---EeccCCc
Confidence 34688999999987 99999999999999999999764311 11101111 11234555544 221 122
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH----HHH
Q 004826 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR----VAL 625 (728)
Q Consensus 550 reNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR----IaI 625 (728)
.|| +|+||.+. ..|
T Consensus 83 ~~~--------------------------------------------------------------ls~g~s~f~~e~~~l 100 (216)
T cd03284 83 SDD--------------------------------------------------------------LAGGRSTFMVEMVET 100 (216)
T ss_pred hhh--------------------------------------------------------------hccCcchHHHHHHHH
Confidence 333 44444443 235
Q ss_pred HHHh--ccCCCEEEEeCc---CcCCCHHHH-HHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHH
Q 004826 626 ARAF--LKAPPILLCDEA---TSALDSTTE-AEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDL 699 (728)
Q Consensus 626 ARAL--l~~p~ILILDEa---TSaLD~~tE-~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eL 699 (728)
++++ ..+|+++||||| |+++|...- ..+.+.+.+. .++|+|++||.....+.+|++.-+++|++...++.+++
T Consensus 101 ~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 101 ANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred HHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 5555 359999999999 999998652 4455666442 37899999999887788898877889998877766655
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=4.3e-14 Score=142.80 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=95.5
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE-EEcCCCCCCcccH
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG-VVPQDTVLFNDTI 549 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia-~V~Qd~~LF~gTI 549 (728)
++++.+|++|++++|+.++|.|||||||||+++.+.++. +..++| +||-+. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 457899999999999999999999999999999998772 222332 222221 11245
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh
Q 004826 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF 629 (728)
Q Consensus 550 reNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL 629 (728)
.|||... +..+ ..+.++-.. +|+|++|+. .+-++
T Consensus 72 ~d~I~~~------------------------~~~~--d~~~~~~S~-------------------fs~e~~~~~-~il~~ 105 (204)
T cd03282 72 FNRLLSR------------------------LSND--DSMERNLST-------------------FASEMSETA-YILDY 105 (204)
T ss_pred hhheeEe------------------------cCCc--cccchhhhH-------------------HHHHHHHHH-HHHHh
Confidence 5555211 1110 011122223 999999764 44557
Q ss_pred ccCCCEEEEeCcCcCCCHHHHHHHHHH-HHHHc-CCCeEEEeccCchHHhhcC
Q 004826 630 LKAPPILLCDEATSALDSTTEAEILNA-LKSLA-NNRTSIFIAHRLTTAMQCD 680 (728)
Q Consensus 630 l~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~-~~~TvIvIaHRLsti~~aD 680 (728)
..+|++++||||++++|+..-..+..+ ++.+. .++|+|++||....++.++
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 889999999999999999765544433 33332 4799999999998877643
No 420
>PRK00064 recF recombination protein F; Reviewed
Probab=99.52 E-value=6.2e-14 Score=153.92 Aligned_cols=80 Identities=29% Similarity=0.370 Sum_probs=68.1
Q ss_pred CCCCCCCChhHHHHHHHHHHhc---------cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-
Q 004826 609 RPLFVSLSGGEKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ- 678 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~- 678 (728)
.+....+|+||+|+++||++|. ++||||+||||+|.||+...+.+.+.+.++ ++++++.+|.+..+..
T Consensus 268 ~~~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~ 345 (361)
T PRK00064 268 LPAADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADL 345 (361)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhh
Confidence 3444569999999999999884 899999999999999999999999988653 4688999998776544
Q ss_pred --cCeEEEEeCCEE
Q 004826 679 --CDEIIVLENGKV 690 (728)
Q Consensus 679 --aD~IiVld~G~I 690 (728)
.++++.|++|+|
T Consensus 346 ~~~~~i~~v~~G~i 359 (361)
T PRK00064 346 LENAKIFHVEQGKI 359 (361)
T ss_pred hccCcEEEEeCCEE
Confidence 468999999997
No 421
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.51 E-value=9.9e-14 Score=147.76 Aligned_cols=203 Identities=25% Similarity=0.408 Sum_probs=143.4
Q ss_pred EEEecCCceeeeeeeEEEeCCc-----EEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEc
Q 004826 465 HFSYLTERKILDGVSFVVPAGK-----SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (728)
Q Consensus 465 sF~Y~~~~~vL~~isl~I~~Ge-----~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~ 539 (728)
.++||..+..+.++.|.|+.|+ .+...|++|-||||++++++|..+|++|. ++..+ +|+|=|
T Consensus 342 ~y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~------e~p~l-------nVSykp 408 (592)
T KOG0063|consen 342 RYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG------EIPVL-------NVSYKP 408 (592)
T ss_pred eeccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC------ccccc-------ceeccc
Confidence 3678887888999999999996 57889999999999999999999998872 33333 478888
Q ss_pred CCCC-CCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 540 QDTV-LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 540 Qd~~-LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
|... =|.+|+|+=+ .+.+|+|-..-..-..+.+ |-..+..++..=.+ ||||
T Consensus 409 qkispK~~~tvR~ll--------~~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~-------------------lSgg 460 (592)
T KOG0063|consen 409 QKISPKREGTVRQLL--------HTKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQG-------------------LSGG 460 (592)
T ss_pred cccCccccchHHHHH--------HHHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhc-------------------CCch
Confidence 8654 6889998754 1233333332222222222 22233333333333 9999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH--cCCCeEEEeccCchHHh-hcCeEEEEeCC--EEEEE
Q 004826 619 EKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL--ANNRTSIFIAHRLTTAM-QCDEIIVLENG--KVIEQ 693 (728)
Q Consensus 619 QrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l--~~~~TvIvIaHRLsti~-~aD~IiVld~G--~Ive~ 693 (728)
+.||+|||=+|=+.+++.+.|||.+-||++.....-.-+++. ...+|-.+|-|.+-..- .|||++|.+.- ...-.
T Consensus 461 elQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a 540 (592)
T KOG0063|consen 461 ELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVA 540 (592)
T ss_pred hhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCccccccc
Confidence 999999999999999999999999999987655444445553 46799999999986553 49999999752 23333
Q ss_pred cChHHHhhccchHHH
Q 004826 694 GSHDDLLTKAGRYAQ 708 (728)
Q Consensus 694 Gth~eLl~~~g~Y~~ 708 (728)
-.+..|+.-...+.+
T Consensus 541 ~~p~~Ll~gmN~fl~ 555 (592)
T KOG0063|consen 541 NSPQSLLAGMNRFLK 555 (592)
T ss_pred CChhHHHHHhHHHHh
Confidence 455666654444433
No 422
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.51 E-value=2.6e-14 Score=166.41 Aligned_cols=112 Identities=24% Similarity=0.384 Sum_probs=92.7
Q ss_pred HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhc----------cCC
Q 004826 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFL----------KAP 633 (728)
Q Consensus 564 ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl----------~~p 633 (728)
.+.+.++..+. ++...+|+++++.+++.|... ....+||||||||++|||||+ .+|
T Consensus 432 ~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~-------------~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~ 497 (562)
T PHA02562 432 QINHYLQIMEA-DYNFTLDEEFNETIKSRGRED-------------FSYASFSQGEKARIDLALLFTWRDVASKVSGVDT 497 (562)
T ss_pred HHHHHHHHhhe-eEEEEechhhhhHHhcCCCCc-------------cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34445554443 555678999999999999531 012349999999999999887 599
Q ss_pred CEEEEeCcC-cCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeC-CEE
Q 004826 634 PILLCDEAT-SALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN-GKV 690 (728)
Q Consensus 634 ~ILILDEaT-SaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~-G~I 690 (728)
++||||||| ++||+.+...+.+.|+++ +++|+|+|||+.+....||++++|++ |+.
T Consensus 498 ~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 498 NLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred CeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 999999998 789999999999999988 78999999999999999999999986 554
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.50 E-value=4.3e-14 Score=144.58 Aligned_cols=71 Identities=35% Similarity=0.473 Sum_probs=59.1
Q ss_pred CChhHHHHHHHH----HHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEE
Q 004826 615 LSGGEKQRVALA----RAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 615 LSGGQrQRIaIA----RALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVl 685 (728)
||||||-+++|| ..-++++|++||||+.++||....+.+.+.|+++.+++-+|++||+-.+...||+.+.+
T Consensus 137 lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 137 LSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp S-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999987 33467899999999999999999999999999998889999999999999999999876
No 424
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=9.8e-14 Score=147.59 Aligned_cols=197 Identities=26% Similarity=0.372 Sum_probs=129.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc--CCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g--ly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
.|.++|.+.+-. ++..+.|-||+|-.|.++++|||+|-|||||++-|.- |--|..=.|
T Consensus 264 DIKiEnF~ISA~-Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDv------------------- 323 (807)
T KOG0066|consen 264 DIKIENFDISAQ-GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDV------------------- 323 (807)
T ss_pred cceeeeeeeecc-cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCce-------------------
Confidence 477887766653 4567889999999999999999999999999998753 223333333
Q ss_pred EEEcCCCCCCcccHHHHHHcC---------------------CCCCCH--HHHHHHHHHhccH-------HHHHhCCCcc
Q 004826 536 GVVPQDTVLFNDTIFHNIRYG---------------------RLSATE--EEVYDAARRAAIH-------DTIMNFPAKY 585 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g---------------------~~~~sd--eei~~A~~~a~l~-------~~I~~LP~G~ 585 (728)
-++.|+..-=+.|--+-+.-. +..+.+ +++.+-++..+++ ..+.. -|+
T Consensus 324 LlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAG--LGF 401 (807)
T KOG0066|consen 324 LLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAG--LGF 401 (807)
T ss_pred EeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhh--cCC
Confidence 445555544444433333211 110000 1111111111111 11111 133
Q ss_pred cchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCe
Q 004826 586 STVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRT 665 (728)
Q Consensus 586 dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~T 665 (728)
+-..-++ |+ ..+|||=|-|++|||||+-.|-+|.|||||.+||-..---+-.-|..+ .+|
T Consensus 402 skEMQ~r-----------------Pt-~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKT 461 (807)
T KOG0066|consen 402 SKEMQER-----------------PT-TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKT 461 (807)
T ss_pred ChhHhcC-----------------Cc-cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hhe
Confidence 3333333 32 249999999999999999999999999999999987655444556654 479
Q ss_pred EEEeccCchHHhh-cCeEEEEeCCEEE-EEcCh
Q 004826 666 SIFIAHRLTTAMQ-CDEIIVLENGKVI-EQGSH 696 (728)
Q Consensus 666 vIvIaHRLsti~~-aD~IiVld~G~Iv-e~Gth 696 (728)
.++|+|.-+.+.+ |..||-||+-++- -.|+|
T Consensus 462 LLIVSHDQgFLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 462 LLIVSHDQGFLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred eEEEecccchHHHHHHHHhhhhhhhhhhhcchH
Confidence 9999999999877 9999999998873 45665
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.43 E-value=2.2e-12 Score=143.71 Aligned_cols=177 Identities=20% Similarity=0.285 Sum_probs=128.9
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC---EeCCC-----CCHHHHhcceEEEcCCC
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG---QDICE-----VTLESLRKSIGVVPQDT 542 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG---~di~~-----i~~~~lR~~Ia~V~Qd~ 542 (728)
+..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++...+++.|.+|.+-.
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~ 223 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD 223 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence 45689999 99999999999999999999999999999999999999955 44553 45566888888886421
Q ss_pred CCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH
Q 004826 543 VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR 622 (728)
Q Consensus 543 ~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR 622 (728)
+..-+++..+--...+.|+... +|.|-.+-=+-.. ---|.||
T Consensus 224 ----------------~~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dslt--------------------r~A~A~r 265 (438)
T PRK07721 224 ----------------QPALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVT--------------------RVAMAQR 265 (438)
T ss_pred ----------------CCHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChH--------------------HHHHHHH
Confidence 1122333333333355566664 4777665544322 0112222
Q ss_pred -HHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc---CCC-----eEEEeccCchHHhhcCeEEEEeCCEEEEE
Q 004826 623 -VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA---NNR-----TSIFIAHRLTTAMQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 623 -IaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~---~~~-----TvIvIaHRLsti~~aD~IiVld~G~Ive~ 693 (728)
|+++ +..|| .|+++|+..-..+.+.++++. +|. |+++.+|+++. .-||++.++.+|+|+..
T Consensus 266 Eisl~---~ge~P------~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls 335 (438)
T PRK07721 266 EIGLA---VGEPP------TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLD 335 (438)
T ss_pred HHHHh---cCCCC------ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEe
Confidence 2221 24455 689999999999999998876 465 99999999985 88999999999999999
Q ss_pred cCh
Q 004826 694 GSH 696 (728)
Q Consensus 694 Gth 696 (728)
|+-
T Consensus 336 ~~l 338 (438)
T PRK07721 336 RQL 338 (438)
T ss_pred ccH
Confidence 875
No 426
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.35 E-value=1.8e-12 Score=150.52 Aligned_cols=75 Identities=25% Similarity=0.331 Sum_probs=71.5
Q ss_pred CChhHHHHHHHHHHhccC----CCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 615 LSGGEKQRVALARAFLKA----PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~----p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
|||||+||++|||+++.. |++|||||||++||+.+...+.+.|+++.+++|+|+|||.+..+..||++++|++|.
T Consensus 441 lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~~ 519 (563)
T TIGR00634 441 ASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKEG 519 (563)
T ss_pred cCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEcc
Confidence 999999999999999975 699999999999999999999999999888999999999999999999999999875
No 427
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.33 E-value=1.2e-12 Score=133.29 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=43.1
Q ss_pred CChh--HHHHHHHHHHhccCCCEEEEeCcC-----cCCCHHHHHHHHHHHHHHc
Q 004826 615 LSGG--EKQRVALARAFLKAPPILLCDEAT-----SALDSTTEAEILNALKSLA 661 (728)
Q Consensus 615 LSGG--QrQRIaIARALl~~p~ILILDEaT-----SaLD~~tE~~I~~~L~~l~ 661 (728)
.+|+ |+|++.|||+++.+|++++||||| ++||+.+.+.+.+.++++.
T Consensus 151 ~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 151 KSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred CCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 4444 999999999999999999999999 9999999999999998864
No 428
>PRK10869 recombination and repair protein; Provisional
Probab=99.31 E-value=4.6e-12 Score=146.06 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=71.3
Q ss_pred CChhHHHHHHHHHHhcc----CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 615 LSGGEKQRVALARAFLK----APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 615 LSGGQrQRIaIARALl~----~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
+||||+||++|||+++. +|+++||||||++||..+...+.+.|+++.+++|+|+|||.+..+..||++++++++.
T Consensus 431 lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 431 ASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 99999999999999996 6899999999999999999999999999988899999999999999999999998754
No 429
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.30 E-value=1.2e-11 Score=125.94 Aligned_cols=135 Identities=18% Similarity=0.174 Sum_probs=91.8
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc--CCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc--cc
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN--DT 548 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g--ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~--gT 548 (728)
.|-+|++++=..+.+++|+||+|+||||+++.+.. .. +..|...... ...+++..|...-++ +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 45566665422237899999999999999999973 22 5566654432 124777777643221 12
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHH
Q 004826 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARA 628 (728)
Q Consensus 549 IreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARA 628 (728)
+.+++ -| + --+-||+++|++
T Consensus 85 i~~~~--------------------------------S~---------------------------f-~~el~~l~~~l~ 104 (213)
T cd03281 85 VSSGQ--------------------------------SA---------------------------F-MIDLYQVSKALR 104 (213)
T ss_pred hhhcc--------------------------------ch---------------------------H-HHHHHHHHHHHH
Confidence 21111 00 0 234599999999
Q ss_pred hccCCCEEEEeCcCcCCCHHHHHHH-HHHHHHHcC----CCeEEEeccCchHHhhc
Q 004826 629 FLKAPPILLCDEATSALDSTTEAEI-LNALKSLAN----NRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 629 Ll~~p~ILILDEaTSaLD~~tE~~I-~~~L~~l~~----~~TvIvIaHRLsti~~a 679 (728)
+..+|++++||||++++|+.....+ .+.++.+.+ +.++|++||.++.++..
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 9999999999999999999765444 445665542 24899999999988775
No 430
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.29 E-value=1.8e-11 Score=145.68 Aligned_cols=145 Identities=21% Similarity=0.268 Sum_probs=98.9
Q ss_pred ceEEEEEEEEEecCCceeee-----eeeEEEeCC-cEEEEECCCCccHHHHHHHHhcC-CCCCCCEEEECCEeCCCCCHH
Q 004826 457 GSIQFDNVHFSYLTERKILD-----GVSFVVPAG-KSVAIVGTSGSGKSTILRLLFRS-FDTHSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~-----~isl~I~~G-e~vAIVG~SGSGKSTL~~LL~gl-y~p~~G~I~idG~di~~i~~~ 529 (728)
+.|.++++.. |+++ .+|+++.++ +.++|+||+|+||||++|.+.+. +.+..|
T Consensus 294 ~~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G--------------- 352 (771)
T TIGR01069 294 GKIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG--------------- 352 (771)
T ss_pred CCEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC---------------
Confidence 3577777654 3343 368888877 99999999999999999999987 333333
Q ss_pred HHhcceEEEcCCCC-CCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 530 SLRKSIGVVPQDTV-LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~-LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
.+||.... .+ .+.+++. . ...+++ .+ .++=.
T Consensus 353 ------~~Vpa~~~~~~--~~~d~i~-~--~i~~~~------------si-----------~~~LS-------------- 384 (771)
T TIGR01069 353 ------IPIPANEHSEI--PYFEEIF-A--DIGDEQ------------SI-----------EQNLS-------------- 384 (771)
T ss_pred ------CCccCCccccc--cchhhee-e--ecChHh------------HH-----------hhhhh--------------
Confidence 14555432 11 1233331 1 111111 01 11112
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHH-HHHHHc-CCCeEEEeccCchHH
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN-ALKSLA-NNRTSIFIAHRLTTA 676 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~-~L~~l~-~~~TvIvIaHRLsti 676 (728)
.||+|++|+..|++++ .+|+++|||||++++|+..-..+.. .++.+. +++++|++||.....
T Consensus 385 -----tfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 385 -----TFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred -----HHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 2999999999999987 7899999999999999999988854 444433 579999999997653
No 431
>PRK13695 putative NTPase; Provisional
Probab=99.24 E-value=8.5e-12 Score=123.02 Aligned_cols=76 Identities=18% Similarity=0.196 Sum_probs=62.5
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCc--CcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEA--TSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIE 692 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEa--TSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive 692 (728)
+||+++-++.+++..+++|+++++||+ +..+|....+.+.+.+ ..++++|+++|.-..-..+|+|.++.+|+|++
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~ 155 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPGGRVYE 155 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCCcEEEE
Confidence 999999999999999999999999995 4455544444444444 25799999999976667899999999999987
Q ss_pred E
Q 004826 693 Q 693 (728)
Q Consensus 693 ~ 693 (728)
.
T Consensus 156 ~ 156 (174)
T PRK13695 156 L 156 (174)
T ss_pred E
Confidence 6
No 432
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.23 E-value=1.8e-11 Score=131.74 Aligned_cols=144 Identities=17% Similarity=0.238 Sum_probs=103.3
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCC
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR 557 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~ 557 (728)
+++.+++|+.++|+|++||||||+++.|+++++|..|.+.|+ |..++.+.. ++.+.++.|... -+.
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~~-----------~~~ 202 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKGG-----------QGL 202 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCCC-----------CCc
Confidence 457788999999999999999999999999999999988885 445544332 233333222100 001
Q ss_pred CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 004826 558 LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637 (728)
Q Consensus 558 ~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILI 637 (728)
...+.+ =.++++|-.+|++++
T Consensus 203 ~~~~~~-----------------------------------------------------------~~l~~~Lr~~pd~ii 223 (308)
T TIGR02788 203 AKVTPK-----------------------------------------------------------DLLQSCLRMRPDRII 223 (308)
T ss_pred CccCHH-----------------------------------------------------------HHHHHHhcCCCCeEE
Confidence 111111 245567778999999
Q ss_pred EeCcCcCCCHHHHHHHHHHHHHHcCC-CeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhh
Q 004826 638 CDEATSALDSTTEAEILNALKSLANN-RTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 638 LDEaTSaLD~~tE~~I~~~L~~l~~~-~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
+||+.+ .+ +.+.++....| .+++...|-.+.....||+..|..|+++..|..+|.+.
T Consensus 224 ~gE~r~---~e----~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~~ 281 (308)
T TIGR02788 224 LGELRG---DE----AFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYIV 281 (308)
T ss_pred EeccCC---HH----HHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHHH
Confidence 999997 22 34445544444 46799999999888899999999999999998888873
No 433
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.21 E-value=1.3e-11 Score=123.11 Aligned_cols=72 Identities=19% Similarity=0.145 Sum_probs=53.6
Q ss_pred CChhHHHHHHHHHHhcc--CCCEEEEeCcCcCCCHHHHHHHHHH-HHHHc--CCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 615 LSGGEKQRVALARAFLK--APPILLCDEATSALDSTTEAEILNA-LKSLA--NNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 615 LSGGQrQRIaIARALl~--~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~--~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
||+|++| +++++.. +|+++|+||||+++|+.....+... ++.+. .++|+|++||..+..+.+|+---+++++
T Consensus 62 fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~v~~~~ 138 (185)
T smart00534 62 FMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPGVRNLH 138 (185)
T ss_pred HHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCccceEEE
Confidence 8888887 4555555 9999999999999999977776544 45443 3789999999998777787533334443
No 434
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.18 E-value=1.1e-10 Score=133.62 Aligned_cols=90 Identities=29% Similarity=0.480 Sum_probs=80.9
Q ss_pred CCChhHHHHHHHHHHhccCC--CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE-----
Q 004826 614 SLSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL----- 685 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl----- 685 (728)
.|||||.|||-||+-+-..= =++|||||+.+|-+.--.++.++|+++. .|.|+|+|-|...|++.||+|+-|
T Consensus 481 TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iIDiGPgAG 560 (935)
T COG0178 481 TLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHIIDIGPGAG 560 (935)
T ss_pred CcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEEeeCCCCC
Confidence 39999999999999997663 4789999999999988888888888775 589999999999999999999987
Q ss_pred -eCCEEEEEcChHHHhhcc
Q 004826 686 -ENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 686 -d~G~Ive~Gth~eLl~~~ 703 (728)
..|+||.+||++|+|+..
T Consensus 561 ~~GGeIv~~Gtp~~i~~~~ 579 (935)
T COG0178 561 EHGGEIVAEGTPEELLANP 579 (935)
T ss_pred cCCCEEEEccCHHHHHhCC
Confidence 479999999999999876
No 435
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.18 E-value=1.3e-10 Score=127.69 Aligned_cols=64 Identities=28% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCCCChhHHHHHHHHHHhcc---------CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh
Q 004826 612 FVSLSGGEKQRVALARAFLK---------APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM 677 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~---------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~ 677 (728)
-..+|.||+++++||.+|.. +||||+||||+|.||+..-+.+.+.|... +.++++.+|.+..+.
T Consensus 273 ~~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 273 EDFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HHhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 34599999999999999999 99999999999999999999999999753 679999999987654
No 436
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.17 E-value=7.9e-11 Score=120.44 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=42.8
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc-CCCCCCCEEEE
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRI 518 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g-ly~p~~G~I~i 518 (728)
++.+.+|++|++.+|++++|.||+|+||||+++.+++ .+.++.|....
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3578999999999999999999999999999999999 77788887544
No 437
>PRK14079 recF recombination protein F; Provisional
Probab=99.16 E-value=3.5e-10 Score=123.78 Aligned_cols=78 Identities=26% Similarity=0.307 Sum_probs=62.6
Q ss_pred CCCCCCChhHHHHHHHHHHhc---------cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcC
Q 004826 610 PLFVSLSGGEKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCD 680 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD 680 (728)
+.-.-+|+||++++++|+.|. .+|||++||||+|.||...-..+.+.|.+. ..+.|.-++ .-..+|
T Consensus 259 ~~~~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t~---~~~~~~ 333 (349)
T PRK14079 259 PAHRYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGTE---APPGAA 333 (349)
T ss_pred ehHHhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcCC---CCCCCc
Confidence 333458999999999999998 899999999999999999999999888653 234444333 345689
Q ss_pred eEEEEeCCEEEE
Q 004826 681 EIIVLENGKVIE 692 (728)
Q Consensus 681 ~IiVld~G~Ive 692 (728)
+++++++|++.-
T Consensus 334 ~~~~~~~~~~~~ 345 (349)
T PRK14079 334 LTLRIEAGVFTP 345 (349)
T ss_pred eEEEEeccEecC
Confidence 999999998753
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.13 E-value=6.3e-10 Score=114.77 Aligned_cols=71 Identities=18% Similarity=0.316 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHhcc----CCCEEEEeCcCcCC----CHHHHHHHHHHHHHHcC-CCeEEEeccCchHH--------h
Q 004826 615 LSGGEKQRVALARAFLK----APPILLCDEATSAL----DSTTEAEILNALKSLAN-NRTSIFIAHRLTTA--------M 677 (728)
Q Consensus 615 LSGGQrQRIaIARALl~----~p~ILILDEaTSaL----D~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti--------~ 677 (728)
+|+++.++-.+++.+-. +|+++++||||+.+ |+...+.+.+.++.+.+ ++|+++ +|....+ .
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILR 174 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEE
Confidence 67776665555544433 69999999999999 77766778888876644 666655 5554332 1
Q ss_pred h-cCeEEEEe
Q 004826 678 Q-CDEIIVLE 686 (728)
Q Consensus 678 ~-aD~IiVld 686 (728)
. ||-|+.|+
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 1 58888886
No 439
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.10 E-value=5.9e-10 Score=133.20 Aligned_cols=75 Identities=20% Similarity=0.170 Sum_probs=59.9
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHH-HHHHc-CCCeEEEeccCchHHhhc-CeEEEEeCCEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLA-NNRTSIFIAHRLTTAMQC-DEIIVLENGKVI 691 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~-~~~TvIvIaHRLsti~~a-D~IiVld~G~Iv 691 (728)
||+|++|+..|+|++ .+|+++|||||++++|+..-..+..+ ++.+. +++|+|++||.......+ |+.. +.++.+.
T Consensus 391 fS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~-v~~~~~~ 468 (782)
T PRK00409 391 FSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREG-VENASVE 468 (782)
T ss_pred HHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCC-eEEEEEE
Confidence 999999999999999 89999999999999999988877654 44432 578999999998876654 4443 3455553
No 440
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.09 E-value=5.1e-11 Score=131.58 Aligned_cols=67 Identities=19% Similarity=0.225 Sum_probs=56.8
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC-EEEECCEeCCCCCHHHHhcceEEEcCCC
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSIGVVPQDT 542 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G-~I~idG~di~~i~~~~lR~~Ia~V~Qd~ 542 (728)
++|++|||+|++||.++|+||||||||||++ .++.+|++| +|.+||.++...+...++.-= +|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHhh
Confidence 6899999999999999999999999999999 778888888 799999999887654433222 888864
No 441
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=99.09 E-value=2.1e-10 Score=124.88 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeee-----------eeeEEEeCCcEEEEECC
Q 004826 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILD-----------GVSFVVPAGKSVAIVGT 493 (728)
Q Consensus 425 ~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~-----------~isl~I~~Ge~vAIVG~ 493 (728)
++..+.+|++++++.++.... .+ ....+.|+|+||+|.||+++++|+ |+++.|.+||+++||||
T Consensus 102 R~~~~~ER~~~Ll~v~~vn~~----~~-e~~~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~ 176 (415)
T TIGR00767 102 RSPKEGERYFALLKVESVNGD----DP-EKAKNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAP 176 (415)
T ss_pred eccccHhHHHHHhCCCccCCC----Cc-cccCCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECC
Confidence 445678999999988664211 11 122468999999999998888997 99999999999999999
Q ss_pred CCccHHHHHHHHhcCCCCC
Q 004826 494 SGSGKSTILRLLFRSFDTH 512 (728)
Q Consensus 494 SGSGKSTL~~LL~gly~p~ 512 (728)
+|+|||||+++|.+.+...
T Consensus 177 ~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCChhHHHHHHHHhhccc
Confidence 9999999999999998654
No 442
>PRK01156 chromosome segregation protein; Provisional
Probab=99.07 E-value=3e-10 Score=139.44 Aligned_cols=74 Identities=27% Similarity=0.356 Sum_probs=65.3
Q ss_pred CCCChhHHHHHHH------HHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-C--C-CeEEEeccCchHHhhcCeE
Q 004826 613 VSLSGGEKQRVAL------ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-N--N-RTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 613 ~~LSGGQrQRIaI------ARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~--~-~TvIvIaHRLsti~~aD~I 682 (728)
..|||||+||+|| ||+++.+|++++|||||++||+.+...+.+.+.... . + .|+|+|||+...+..||+|
T Consensus 800 ~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d~i 879 (895)
T PRK01156 800 DSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVADVA 879 (895)
T ss_pred ccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcCeE
Confidence 3499999999975 599999999999999999999999999888876432 2 2 5899999999999999999
Q ss_pred EEEe
Q 004826 683 IVLE 686 (728)
Q Consensus 683 iVld 686 (728)
++++
T Consensus 880 i~~~ 883 (895)
T PRK01156 880 YEVK 883 (895)
T ss_pred EEEE
Confidence 9997
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.05 E-value=1.3e-09 Score=120.89 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=116.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.++-++++-.|..+..+++++ |++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------------- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------------- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------
Confidence 456667776676556788885 99999999999999999999999999999999998887766432
Q ss_pred EcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 538 VPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 538 V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
.+++|.+.. .++..++. .|.+=-.- .+-|.
T Consensus 195 ---------~ev~e~~~~------------~l~~~gl~----------~tvvv~~t-------------------sd~s~ 224 (432)
T PRK06793 195 ---------REVKDFIRK------------ELGEEGMR----------KSVVVVAT-------------------SDESH 224 (432)
T ss_pred ---------ccHHHHHHH------------Hhhhcccc----------eeEEEEEC-------------------CCCCH
Confidence 233333321 00000110 01110111 23899
Q ss_pred hHHHHHHHHHHhc-------cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEeCCE
Q 004826 618 GEKQRVALARAFL-------KAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGK 689 (728)
Q Consensus 618 GQrQRIaIARALl-------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G~ 689 (728)
|+|+|.+.+.+.+ .++-+|++||+|...|+. +.|-..+.+.. .|.|..+-+|=-...+.|-+ .++|.
T Consensus 225 ~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GS 299 (432)
T PRK06793 225 LMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGS 299 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcc
Confidence 9999999999988 789999999999999997 55555665554 56888887883333444443 47888
Q ss_pred EEEEcC
Q 004826 690 VIEQGS 695 (728)
Q Consensus 690 Ive~Gt 695 (728)
|...++
T Consensus 300 iT~~~t 305 (432)
T PRK06793 300 ITGIYT 305 (432)
T ss_pred eEEEEE
Confidence 765443
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.05 E-value=3.9e-10 Score=138.31 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=67.0
Q ss_pred CCCChhHHH------HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhhcCeEEEE
Q 004826 613 VSLSGGEKQ------RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 613 ~~LSGGQrQ------RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~aD~IiVl 685 (728)
..|||||+| |+||||+++.+|+++||||||++||+.....+.+.|..+.. +.|+|+|||+......||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 349999999 56677789999999999999999999999999999987643 57999999999988899999999
Q ss_pred eC
Q 004826 686 EN 687 (728)
Q Consensus 686 d~ 687 (728)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 445
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.04 E-value=2.7e-10 Score=143.61 Aligned_cols=75 Identities=33% Similarity=0.431 Sum_probs=68.5
Q ss_pred CCCCCChhHHHHHHHHHHh----ccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEE
Q 004826 611 LFVSLSGGEKQRVALARAF----LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARAL----l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVl 685 (728)
.+..||||||||++|||++ +++||++||||||++||+.+...+.+.|..+.++.|+|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 3456999999999999998 57889999999999999999999999999887789999999999999999999754
No 446
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.04 E-value=3.3e-11 Score=141.63 Aligned_cols=162 Identities=12% Similarity=0.125 Sum_probs=107.4
Q ss_pred HHHHHHHHHHchHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004826 317 DASTRAIDSLINYETVKYFNNEAFEAEQY-----DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILS 391 (728)
Q Consensus 317 ~~~~~~~e~l~gi~~IKaf~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~ 391 (728)
...+.+.|.+.++.+||..+.|......| .....+..+...+..........+...+......+++++|+++++.
T Consensus 41 ~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~ 120 (644)
T PRK10733 41 VNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPMLLLIGVWIFFM 120 (644)
T ss_pred HHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566778888999999999887766566 4444444444433333222222223333444555666789999999
Q ss_pred CCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEe
Q 004826 392 GEMTVG---DLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSY 468 (728)
Q Consensus 392 g~lt~G---~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y 468 (728)
|.|+.| .+++|..+...+..| ..+...+.++.......+|+.++.+...+..
T Consensus 121 g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~------------------------ 175 (644)
T PRK10733 121 RQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAELVEYLREPS------------------------ 175 (644)
T ss_pred hhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHHHHHHhhCHH------------------------
Confidence 999998 788888887777777 5666666677666667777777665422100
Q ss_pred cCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 469 ~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
..+++...+++| +.|+||+|+||||+++.+++...
T Consensus 176 -----~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 176 -----RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred -----HHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 001122256667 99999999999999999988553
No 447
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.03 E-value=6e-10 Score=119.34 Aligned_cols=170 Identities=26% Similarity=0.312 Sum_probs=106.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC----CHHHHhc--------------ceEEEcCCCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV----TLESLRK--------------SIGVVPQDTVL 544 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i----~~~~lR~--------------~Ia~V~Qd~~L 544 (728)
+||+..++||.+|-||||-++.|+|-.+|.-|.- -++-+-.++ .-.+|.+ ..-||.|=|-.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~-~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~ 176 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRY-DNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRA 176 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCC-CCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHH
Confidence 6899999999999999999999999999988852 111111110 0001100 00122222222
Q ss_pred CcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHH
Q 004826 545 FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVA 624 (728)
Q Consensus 545 F~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIa 624 (728)
-.+++.+++.--...-+.+ ++++.-++... ++|+- ..||||+-||.+
T Consensus 177 ~k~~v~~~l~~~~~r~~~~---~~~~~~~L~~~----------------------------~~re~--~~lsggelqrfa 223 (592)
T KOG0063|consen 177 VKGTVGSLLDRKDERDNKE---EVCDQLDLNNL----------------------------LDREV--EQLSGGELQRFA 223 (592)
T ss_pred HHHHHHHHHHHHhhcccHH---HHHHHHHHhhH----------------------------HHhhh--hhcccchhhhhh
Confidence 3333433332111111111 11221111111 11111 129999999999
Q ss_pred HHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEe
Q 004826 625 LARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLE 686 (728)
Q Consensus 625 IARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld 686 (728)
||-+.++++++.++|||.|-||....-.--..|+.+. .++-+|+|-|.||.+.. .|-|-++-
T Consensus 224 ia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 224 IAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred hhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9999999999999999999999987776666777654 57999999999998764 67776664
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.01 E-value=4e-09 Score=127.31 Aligned_cols=71 Identities=27% Similarity=0.406 Sum_probs=60.4
Q ss_pred hccCCCEEEEeCcCcCC-CHHHHHHHHHHHHHHc-CCCeEEEeccCchHH----------hhcCeEEEEeCCEEEEEcCh
Q 004826 629 FLKAPPILLCDEATSAL-DSTTEAEILNALKSLA-NNRTSIFIAHRLTTA----------MQCDEIIVLENGKVIEQGSH 696 (728)
Q Consensus 629 Ll~~p~ILILDEaTSaL-D~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti----------~~aD~IiVld~G~Ive~Gth 696 (728)
+..+|+++++|||+++| |+...+.+.+.+++.. .+.++|++||.++.+ ..||..++|.+|++.+.|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~ 728 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR 728 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence 35799999999999999 6999999999988764 579999999999887 47999999999999877643
Q ss_pred HHHh
Q 004826 697 DDLL 700 (728)
Q Consensus 697 ~eLl 700 (728)
++.
T Consensus 729 -~~~ 731 (818)
T PRK13830 729 -EFY 731 (818)
T ss_pred -HHH
Confidence 443
No 449
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.01 E-value=3.3e-09 Score=105.26 Aligned_cols=72 Identities=19% Similarity=0.128 Sum_probs=55.1
Q ss_pred CChhHHH-----HHHHHH-HhccCCCEEEEeCcCcCCC---HHHHHHHHHHHHHHc-CCCeEEEeccCchH---------
Q 004826 615 LSGGEKQ-----RVALAR-AFLKAPPILLCDEATSALD---STTEAEILNALKSLA-NNRTSIFIAHRLTT--------- 675 (728)
Q Consensus 615 LSGGQrQ-----RIaIAR-ALl~~p~ILILDEaTSaLD---~~tE~~I~~~L~~l~-~~~TvIvIaHRLst--------- 675 (728)
+|+||+| +..+.+ +.-.+|+++|+||||+.+| ......+.+.++.+. .+.|+|+++|....
T Consensus 72 ~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~~~ 151 (187)
T cd01124 72 IGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGGGD 151 (187)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCcCc
Confidence 8999999 344444 4556899999999999999 666666666665543 47899999998764
Q ss_pred H-hhcCeEEEEe
Q 004826 676 A-MQCDEIIVLE 686 (728)
Q Consensus 676 i-~~aD~IiVld 686 (728)
+ ..||.|+.|+
T Consensus 152 ~~~~aD~ii~l~ 163 (187)
T cd01124 152 VEYLVDGVIRLR 163 (187)
T ss_pred eeEeeeEEEEEE
Confidence 3 3489999997
No 450
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=1.1e-09 Score=136.17 Aligned_cols=76 Identities=22% Similarity=0.264 Sum_probs=68.4
Q ss_pred CCCChhHHHHHHHHHHhcc----------CCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cC
Q 004826 613 VSLSGGEKQRVALARAFLK----------APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CD 680 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD 680 (728)
.+|||||++|++||+||.. +|++|||||||++||+++-..+.+.|+++. .|+||++|||....... +|
T Consensus 949 ~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~~ 1028 (1042)
T TIGR00618 949 ATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIPH 1028 (1042)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhCC
Confidence 4599999999999999985 799999999999999999999999998874 57999999999987654 89
Q ss_pred eEEEEeCC
Q 004826 681 EIIVLENG 688 (728)
Q Consensus 681 ~IiVld~G 688 (728)
+|.|++.|
T Consensus 1029 ~i~v~~~~ 1036 (1042)
T TIGR00618 1029 RILVKKTN 1036 (1042)
T ss_pred EEEEEECC
Confidence 99999754
No 451
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.94 E-value=2.5e-09 Score=102.69 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHH----------HHHHHHHHHHHc-CCCeEEEeccCchHH
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTT----------EAEILNALKSLA-NNRTSIFIAHRLTTA 676 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~t----------E~~I~~~L~~l~-~~~TvIvIaHRLsti 676 (728)
.+.++.++++.+++.-.+|+++|+||+++-+|... .+.+.+.++... .+.|+|+++|.....
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 45666678899999999999999999997665544 344444333332 489999999987544
No 452
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.94 E-value=3.5e-08 Score=91.22 Aligned_cols=117 Identities=39% Similarity=0.496 Sum_probs=85.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCCCCC-CEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCH
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATE 562 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~-G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sd 562 (728)
+|..+.|+||+|+||||+++.|++.+.... +.+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999887655 5677766544433322222
Q ss_pred HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcC
Q 004826 563 EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEAT 642 (728)
Q Consensus 563 eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaT 642 (728)
.....+.... ..+++.++..+++|-..+|.++++||+.
T Consensus 51 -----------------------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~viiiDei~ 88 (148)
T smart00382 51 -----------------------LIIVGGKKAS-------------------GSGELRLRLALALARKLKPDVLILDEIT 88 (148)
T ss_pred -----------------------hhhhhccCCC-------------------CCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 1122222323 7889999999999999899999999999
Q ss_pred cCCCHHHHHHHHH-------HHHHHcCCCeEEEeccC
Q 004826 643 SALDSTTEAEILN-------ALKSLANNRTSIFIAHR 672 (728)
Q Consensus 643 SaLD~~tE~~I~~-------~L~~l~~~~TvIvIaHR 672 (728)
...+......... .......+..+|.++|.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 89 SLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 9999998887764 23334466788888883
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.91 E-value=2.1e-09 Score=108.30 Aligned_cols=57 Identities=26% Similarity=0.257 Sum_probs=45.1
Q ss_pred HHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEe
Q 004826 624 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 624 aIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld 686 (728)
+|++||..+|+++++||+. |.++-.. +++....|.+++.++|..+.....||++.|-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~---~l~~a~~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRL---ALTAAETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHH---HHHHHHcCCEEEEEecCCcHHHHHhHHHhhc
Confidence 5889999999999999996 6655433 3444446899999999999888888887663
No 454
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.90 E-value=2.5e-09 Score=134.93 Aligned_cols=75 Identities=25% Similarity=0.309 Sum_probs=69.3
Q ss_pred CCCChhHHHHHHHHHHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeC
Q 004826 613 VSLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
..||||||++++||++|. ++||++|||||+++||+.+...+.+.|..+.++.++|+|||+..++..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 359999999999999997 578999999999999999999999999998888899999999999999999987753
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.86 E-value=1.1e-09 Score=110.74 Aligned_cols=78 Identities=29% Similarity=0.442 Sum_probs=66.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCC------------CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHH
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 550 (728)
++|+.++|+||||||||||+++|++.++ |..|+ ++|+|+..++.+.+++.+ .|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEMI---ENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHHH---HcCCcEEEEEEC
Confidence 6899999999999999999999999986 88898 699999999999998864 588899999999
Q ss_pred HHHHcCCCCCCHHHHHHHH
Q 004826 551 HNIRYGRLSATEEEVYDAA 569 (728)
Q Consensus 551 eNI~~g~~~~sdeei~~A~ 569 (728)
+| .||. +.+.+.+++
T Consensus 78 ~~-~y~~---~~~~i~~~l 92 (205)
T PRK00300 78 GN-YYGT---PRSPVEEAL 92 (205)
T ss_pred Cc-cccC---cHHHHHHHH
Confidence 99 4764 355555544
No 456
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.81 E-value=1.7e-08 Score=103.02 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=41.0
Q ss_pred cCCCEEEEeCcCcCCCHHHHHHHHHH-HHHHcC--CCeEEEeccCchHHhhc
Q 004826 631 KAPPILLCDEATSALDSTTEAEILNA-LKSLAN--NRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 631 ~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~--~~TvIvIaHRLsti~~a 679 (728)
.+|++++|||+.+++|+.....+..+ ++.+.+ ++++|++||....++..
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 47999999999999999988888777 555544 79999999998877654
No 457
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.81 E-value=9.5e-09 Score=114.16 Aligned_cols=85 Identities=26% Similarity=0.368 Sum_probs=72.9
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC---CEeCCCCCHHH---
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID---GQDICEVTLES--- 530 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id---G~di~~i~~~~--- 530 (728)
+.++.++++..|..+..+++.++ +|.+||+++|+|+||||||||++.|+++.+|+.|.|.+. |.++.++..+.
T Consensus 138 ~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~ 216 (450)
T PRK06002 138 PAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLAD 216 (450)
T ss_pred CCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHH
Confidence 46899999999987778999996 999999999999999999999999999999999999885 56766655433
Q ss_pred -HhcceEEEcCCC
Q 004826 531 -LRKSIGVVPQDT 542 (728)
Q Consensus 531 -lR~~Ia~V~Qd~ 542 (728)
+++.|++|+|..
T Consensus 217 ~r~rtI~vV~qsd 229 (450)
T PRK06002 217 NLKKAVAVVATSD 229 (450)
T ss_pred hhCCeEEEEEcCC
Confidence 346899999964
No 458
>PRK02224 chromosome segregation protein; Provisional
Probab=98.77 E-value=1.2e-08 Score=125.12 Aligned_cols=76 Identities=28% Similarity=0.475 Sum_probs=66.7
Q ss_pred CCCChhHHH------HHHHHHHhccC-----C-CEEEEeCcCcCCCHHHHHHHHHHHHHHcC-C-CeEEEeccCchHHhh
Q 004826 613 VSLSGGEKQ------RVALARAFLKA-----P-PILLCDEATSALDSTTEAEILNALKSLAN-N-RTSIFIAHRLTTAMQ 678 (728)
Q Consensus 613 ~~LSGGQrQ------RIaIARALl~~-----p-~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~-~TvIvIaHRLsti~~ 678 (728)
..||||||| |+||||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 459999999 99999999864 2 67999999999999999999998887653 3 489999999999999
Q ss_pred cCeEEEEeCC
Q 004826 679 CDEIIVLENG 688 (728)
Q Consensus 679 aD~IiVld~G 688 (728)
||++++|.+.
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999753
No 459
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.76 E-value=1.5e-08 Score=103.57 Aligned_cols=63 Identities=33% Similarity=0.436 Sum_probs=53.3
Q ss_pred CCChhHHHHHHHHHHhccCC---CEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHH
Q 004826 614 SLSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTA 676 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti 676 (728)
.+|.|+||.+.|+-+++..+ .++++|||-++|+|...+.+.+.|+...+ +.-+|+.||-...+
T Consensus 236 ~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 236 SLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp ---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred cCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 47999999999999988777 89999999999999999999999988776 78999999987654
No 460
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.76 E-value=8.2e-08 Score=99.29 Aligned_cols=73 Identities=19% Similarity=0.214 Sum_probs=52.3
Q ss_pred CChhHHHHHHHHHHhcc--CCCEEEEeCcCcCCC---HHHHHHHHHHHHHH-cCCCeEEEeccCchH-------H-hhcC
Q 004826 615 LSGGEKQRVALARAFLK--APPILLCDEATSALD---STTEAEILNALKSL-ANNRTSIFIAHRLTT-------A-MQCD 680 (728)
Q Consensus 615 LSGGQrQRIaIARALl~--~p~ILILDEaTSaLD---~~tE~~I~~~L~~l-~~~~TvIvIaHRLst-------i-~~aD 680 (728)
.|.++++.+...+.+++ +|+++|+||+|+.+| .+.-..+.+.++.+ .+++|+++++|.... + --+|
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~D 180 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICD 180 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheE
Confidence 67889999999999998 999999999996544 43334443445432 357899999997542 2 2257
Q ss_pred eEEEEeC
Q 004826 681 EIIVLEN 687 (728)
Q Consensus 681 ~IiVld~ 687 (728)
-++.|+.
T Consensus 181 gvI~L~~ 187 (234)
T PRK06067 181 VYLKLRA 187 (234)
T ss_pred EEEEEEe
Confidence 7777763
No 461
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.71 E-value=2.7e-08 Score=123.32 Aligned_cols=74 Identities=34% Similarity=0.303 Sum_probs=62.5
Q ss_pred CCCChhHHHHHHHHHHhcc--------CCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeE
Q 004826 613 VSLSGGEKQRVALARAFLK--------APPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEI 682 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~--------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~I 682 (728)
..|||||+|+++|||||.. +|++|+|||||++||+.+-..+.+.|+.+. .|+||++|||--..... ..+|
T Consensus 948 ~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~qi 1027 (1047)
T PRK10246 948 RTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQI 1027 (1047)
T ss_pred ccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccceE
Confidence 4599999999999999995 899999999999999999999999998875 67999999995554433 3455
Q ss_pred EEEe
Q 004826 683 IVLE 686 (728)
Q Consensus 683 iVld 686 (728)
.|-.
T Consensus 1028 ~V~k 1031 (1047)
T PRK10246 1028 KVKK 1031 (1047)
T ss_pred EEEE
Confidence 5554
No 462
>PRK12369 putative transporter; Reviewed
Probab=98.68 E-value=0.00032 Score=76.04 Aligned_cols=58 Identities=12% Similarity=0.232 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004826 382 MVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEE 439 (728)
Q Consensus 382 l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~ 439 (728)
+++.+.....|++|.|.+......+.++...+..+...+.++.+-.+..+|+.++.+.
T Consensus 264 ~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 264 YLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677789999999999999999999999999999999999999999999988643
No 463
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.67 E-value=0.00044 Score=76.67 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 004826 382 MVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEE 439 (728)
Q Consensus 382 l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~ 439 (728)
+++.+.....|++|.|.+......+.++...++.+.+.+.++.+-.+..+|+.++.+.
T Consensus 338 ~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~ 395 (409)
T PRK11098 338 LFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAA 395 (409)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677789999999999999999999999999999999999999999999988654
No 464
>PRK01889 GTPase RsgA; Reviewed
Probab=98.65 E-value=2.7e-08 Score=109.18 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=77.9
Q ss_pred eeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHH
Q 004826 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 475 L~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 554 (728)
++.+.-.+++|++++|||+||+|||||++.|+|...|..|+|.+++..-+. ...++++.+++|+.+||+.+-..|+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~~ 261 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMRELQ 261 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhhc
Confidence 555666788999999999999999999999999999999999998754333 23467899999999999998899988
Q ss_pred cCCCCC----CHHHHHHHHHHhccHH
Q 004826 555 YGRLSA----TEEEVYDAARRAAIHD 576 (728)
Q Consensus 555 ~g~~~~----sdeei~~A~~~a~l~~ 576 (728)
+..+.. ...++.+.++.|..++
T Consensus 262 l~~~~~~l~~~f~~~~~~~~~c~f~~ 287 (356)
T PRK01889 262 LWDAEDGVEETFSDIEELAAQCRFRD 287 (356)
T ss_pred ccCchhhHHHhHHHHHHHHccCCCCC
Confidence 876431 1245556655555543
No 465
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.63 E-value=4.8e-08 Score=97.46 Aligned_cols=96 Identities=21% Similarity=0.198 Sum_probs=67.9
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCC--CC-cccHH
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV--LF-NDTIF 550 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~--LF-~gTIr 550 (728)
..+=+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+.+-..++ -++.++++.|... .+ .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 344466789999999999999999999999999999999999999875433332 2456777766553 22 35788
Q ss_pred HHHHcC---CCC------CCHHHHHHHHHHh
Q 004826 551 HNIRYG---RLS------ATEEEVYDAARRA 572 (728)
Q Consensus 551 eNI~~g---~~~------~sdeei~~A~~~a 572 (728)
+++... +|+ ..++|.+++++.+
T Consensus 91 ~~l~~~lR~~pd~i~igEir~~ea~~~~~a~ 121 (186)
T cd01130 91 DLLRSALRMRPDRIIVGEVRGGEALDLLQAM 121 (186)
T ss_pred HHHHHHhccCCCEEEEEccCcHHHHHHHHHH
Confidence 887543 243 3445555555544
No 466
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.61 E-value=6.9e-07 Score=108.61 Aligned_cols=54 Identities=28% Similarity=0.347 Sum_probs=48.1
Q ss_pred HHHHhccCCCEEEEeCcCcCC-CHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh
Q 004826 625 LARAFLKAPPILLCDEATSAL-DSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ 678 (728)
Q Consensus 625 IARALl~~p~ILILDEaTSaL-D~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~ 678 (728)
|+|++..+|.++++|||++.| |+.+.+.+.+.+++.. .|.+++++||.++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 789999999999999999999 7999999999887764 57899999999988765
No 467
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=4e-08 Score=109.18 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=65.6
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC---EEEECCEeCCCCCHHHH------hcceEEEcCCC
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG---SIRIDGQDICEVTLESL------RKSIGVVPQDT 542 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G---~I~idG~di~~i~~~~l------R~~Ia~V~Qd~ 542 (728)
..+++++ |+|.+||+++|+|+||+|||||+++|+|+++|+.+ .|-.+|.+++++..+.+ |..+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4589999 99999999999999999999999999999999864 34445556665554444 55799999998
Q ss_pred CCCc-ccHHHHHH
Q 004826 543 VLFN-DTIFHNIR 554 (728)
Q Consensus 543 ~LF~-gTIreNI~ 554 (728)
..+. -++.+|+.
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 7774 47777764
No 468
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=98.59 E-value=0.0006 Score=72.62 Aligned_cols=224 Identities=16% Similarity=0.133 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 127 VITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFSKV 206 (728)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 206 (728)
++..+++.++.+.+++.+....+.+.|.+..... . .+...+...+++.+ ....+.....++...+
T Consensus 29 l~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~-~-------~f~~~l~~~~~l~~-------~~~~l~~~~~yl~~~L 93 (281)
T PF06472_consen 29 LLVLLLLLLARVYLSVRINFWNGDFYNALQQKDL-Q-------AFWRLLLLFLLLAI-------ASALLNSILKYLRQRL 93 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCH-H-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3333444455666777777777888887754221 1 11111111111111 1122233344444445
Q ss_pred HHHHHHHHHHHHHHHHHcCCcccccccC-hhHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004826 207 ALRTIRSVSRKVFSHLHELDLRYHLSRE-TGAL---NRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPF 282 (728)
Q Consensus 207 ~~~~~~~lr~~~f~~ll~l~~~~f~~~~-~G~l---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (728)
+.+....|...+.++-++-. .||.-.. .+++ -.|+++|.+........+...++..+++++....++.- .+.++
T Consensus 94 ~l~wR~~Lt~~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~-~~g~~ 171 (281)
T PF06472_consen 94 ALRWREWLTRHLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWS-ISGWL 171 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCch
Confidence 55555555555555555544 4554332 2223 46777776655444444555566666555444444322 22222
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 283 AW-ITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQR 361 (728)
Q Consensus 283 ~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~ 361 (728)
.. .+++..++...++.++.+...++..+.++..++....+.....+-+.|-.++-|+.|.++.++..++..+...+..+
T Consensus 172 ~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~ 251 (281)
T PF06472_consen 172 GPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIR 251 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 22222222233333344434444444455555666677778888999999999999999988887776666555444
Q ss_pred HHHHHH
Q 004826 362 SLAFLN 367 (728)
Q Consensus 362 ~~~~~~ 367 (728)
....++
T Consensus 252 ~~~~~~ 257 (281)
T PF06472_consen 252 RRLRLG 257 (281)
T ss_pred HHHHHH
Confidence 444433
No 469
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.53 E-value=8.5e-08 Score=108.00 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=49.8
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcC
Q 004826 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG 556 (728)
Q Consensus 477 ~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g 556 (728)
+.++.+++|+.+++|||+|+||||++..|++.|.+..|. .+|++|++|+ |.-+..||+.++
T Consensus 248 ~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-----------------~kV~LI~~Dt--~RigA~EQLr~~ 308 (484)
T PRK06995 248 SEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-----------------SKVALLTTDS--YRIGGHEQLRIY 308 (484)
T ss_pred CccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-----------------CeEEEEeCCc--cchhHHHHHHHH
Confidence 344456678999999999999999999999988777774 2688999998 666779999653
No 470
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.52 E-value=1.2e-06 Score=95.82 Aligned_cols=172 Identities=25% Similarity=0.318 Sum_probs=117.5
Q ss_pred EEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHH-hcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCC
Q 004826 464 VHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL-FRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (728)
Q Consensus 464 VsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL-~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~ 542 (728)
|+|..|+. -.+.+ +-||+| .+.|||.-=-|||||++.| .|-|+--.| ||. ..|--. .+.
T Consensus 227 ve~~LP~~-g~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGR-----------E~VVT~-~~a 286 (448)
T PF09818_consen 227 VEIELPNG-GTVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGR-----------EFVVTD-PDA 286 (448)
T ss_pred EEEECCCC-CEEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCc-----------eEEEEC-CCc
Confidence 66767653 34555 589999 9999999999999999988 678885555 341 111111 111
Q ss_pred CCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH
Q 004826 543 VLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR 622 (728)
Q Consensus 543 ~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR 622 (728)
. .| .+.|- +....+.+..||.+||.|.||.---- .|=||---|=
T Consensus 287 v----ki---------rAEDG---R~V~~vDISpFI~~LP~g~dT~~FsT--------------------~~ASGSTSqA 330 (448)
T PF09818_consen 287 V----KI---------RAEDG---RSVEGVDISPFINNLPGGKDTTCFST--------------------ENASGSTSQA 330 (448)
T ss_pred e----EE---------EecCC---ceEeCccchHHHhhCCCCCCCCcccc--------------------cCCCchHHHH
Confidence 1 00 01111 23445677899999999999973222 2368999999
Q ss_pred HHHHHHhccCCCEEEEeCcCcCC-----CHHHHHHH----------HHHHHHHc--CCCeEEEeccC-chHHhhcCeEEE
Q 004826 623 VALARAFLKAPPILLCDEATSAL-----DSTTEAEI----------LNALKSLA--NNRTSIFIAHR-LTTAMQCDEIIV 684 (728)
Q Consensus 623 IaIARALl~~p~ILILDEaTSaL-----D~~tE~~I----------~~~L~~l~--~~~TvIvIaHR-Lsti~~aD~IiV 684 (728)
-.|..||=..+++|++||=|||- |...++.| .+.++.+. .|-++|+|+== =..+.-||+|++
T Consensus 331 AnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~ 410 (448)
T PF09818_consen 331 ANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIM 410 (448)
T ss_pred HHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEE
Confidence 99999999999999999999997 77777777 12233331 35555555544 446788999999
Q ss_pred EeCCEEE
Q 004826 685 LENGKVI 691 (728)
Q Consensus 685 ld~G~Iv 691 (728)
||+=+-.
T Consensus 411 Md~Y~~~ 417 (448)
T PF09818_consen 411 MDEYRPK 417 (448)
T ss_pred ecCccch
Confidence 9986643
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.47 E-value=4.9e-07 Score=98.92 Aligned_cols=54 Identities=26% Similarity=0.258 Sum_probs=43.1
Q ss_pred HHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEE
Q 004826 624 ALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEII 683 (728)
Q Consensus 624 aIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~Ii 683 (728)
++++||-.+|+++++||++ |+++-....++ ...|.+++...|..+.....||++
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a---a~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTA---AETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH---HHcCCcEEEEEcCCCHHHHHHHHH
Confidence 5788999999999999997 88887665554 346889999999988776666664
No 472
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.43 E-value=1.3e-06 Score=97.92 Aligned_cols=184 Identities=17% Similarity=0.204 Sum_probs=115.3
Q ss_pred CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccH
Q 004826 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (728)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTI 549 (728)
.+..+++++ |+|.+||+++|+|+||+|||||++.|+++.+|+.|.+...|..-+++. .+.+. ++.+.-
T Consensus 149 TGi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~ 216 (440)
T TIGR01026 149 TGVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEG 216 (440)
T ss_pred ceeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhcccc
Confidence 345799999 999999999999999999999999999999999988777665545433 11110 011000
Q ss_pred HHHH--HcCCC-CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHH
Q 004826 550 FHNI--RYGRL-SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALA 626 (728)
Q Consensus 550 reNI--~~g~~-~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIA 626 (728)
.++- ..... +..-++...+--...+.|+... +|+|-.+==+-.. ---|-|| .|+
T Consensus 217 l~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslT--------------------r~A~A~R-Eis 273 (440)
T TIGR01026 217 LKRSVVVVATSDQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVT--------------------RFAMAQR-EIG 273 (440)
T ss_pred cceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChH--------------------HHHHHHH-HHH
Confidence 1111 11111 1223333333333345566654 4777655433322 0112233 122
Q ss_pred HHhccCCCEEEEeC--cCcCCCHHHHHHHHHHHHHHcC-CC-------eEEEeccCchHHhhcCeEEEEeCCEEEEEcCh
Q 004826 627 RAFLKAPPILLCDE--ATSALDSTTEAEILNALKSLAN-NR-------TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSH 696 (728)
Q Consensus 627 RALl~~p~ILILDE--aTSaLD~~tE~~I~~~L~~l~~-~~-------TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth 696 (728)
+.+.| .+.+.|+..-..+-+-+++... ++ |+++-+|++ +=.-+|++.-+.+|+||-.++-
T Consensus 274 ---------l~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~l 343 (440)
T TIGR01026 274 ---------LAAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRAL 343 (440)
T ss_pred ---------HhcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEecch
Confidence 12344 3568999999888888887653 46 888889998 4456899999999999987764
Q ss_pred HH
Q 004826 697 DD 698 (728)
Q Consensus 697 ~e 698 (728)
.+
T Consensus 344 a~ 345 (440)
T TIGR01026 344 AQ 345 (440)
T ss_pred hh
Confidence 33
No 473
>PRK08149 ATP synthase SpaL; Validated
Probab=98.42 E-value=2.4e-07 Score=102.88 Aligned_cols=69 Identities=19% Similarity=0.386 Sum_probs=61.0
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCC---CEEEECCEeCCCCCHHHHh----cceEEEcCC
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQDICEVTLESLR----KSIGVVPQD 541 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~di~~i~~~~lR----~~Ia~V~Qd 541 (728)
.++++++ +++.+||+++|+|+||+|||||++.|+++++++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 4689999 9999999999999999999999999999999988 9999999999988777765 566776543
No 474
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.42 E-value=4.1e-07 Score=94.41 Aligned_cols=44 Identities=14% Similarity=0.314 Sum_probs=35.8
Q ss_pred hccCCCEEEEeCcCcC------CCHHHHHHHHHHHHHHc--CCCeEEEeccCc
Q 004826 629 FLKAPPILLCDEATSA------LDSTTEAEILNALKSLA--NNRTSIFIAHRL 673 (728)
Q Consensus 629 Ll~~p~ILILDEaTSa------LD~~tE~~I~~~L~~l~--~~~TvIvIaHRL 673 (728)
...+|+++|+| |+++ +|+..-..+.+.|+++. .++|+|+++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7654 68888888888887764 479999999976
No 475
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.40 E-value=2.7e-06 Score=82.82 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=63.7
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeCCEEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLENGKVIE 692 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~G~Ive 692 (728)
-|-||-=-=-+.|.+ .+.-|.|||||-|+|-+.-+-.+...|+++. .|.-+|+.||..=.+.. --+|+-++.+-| |
T Consensus 130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~-~ 207 (233)
T COG3910 130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI-E 207 (233)
T ss_pred hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc-c
Confidence 588887766677776 4568999999999999999999999998875 46888889998754322 248888888775 4
Q ss_pred EcChHHH
Q 004826 693 QGSHDDL 699 (728)
Q Consensus 693 ~Gth~eL 699 (728)
.=+++|.
T Consensus 208 ~~~fe~t 214 (233)
T COG3910 208 ERDFEET 214 (233)
T ss_pred ccchHHH
Confidence 4455555
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.38 E-value=6.4e-08 Score=110.61 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=90.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHH--hcCCCCCCCEEEECCEeCCCCCHHHHhc---ceEEEcCCCCCCcccHHHHHHc
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLL--FRSFDTHSGSIRIDGQDICEVTLESLRK---SIGVVPQDTVLFNDTIFHNIRY 555 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL--~gly~p~~G~I~idG~di~~i~~~~lR~---~Ia~V~Qd~~LF~gTIreNI~~ 555 (728)
=+++|..+.|.|++|||||||..-. .|.-++.+..+++... -+++++++ ++|+..|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4899999999999999999999755 3454456677777652 34444444 33443332210 011111
Q ss_pred CCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHH--HHhccCC
Q 004826 556 GRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALA--RAFLKAP 633 (728)
Q Consensus 556 g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIA--RALl~~p 633 (728)
-+.. ........++..++.+++..+ ... +|+||+||+.|+ .++..+|
T Consensus 88 ~~~~-~~~~~~~~~~~~~l~~~l~~i-----------~~~-------------------ls~g~~qRVvIDSl~aL~~~~ 136 (484)
T TIGR02655 88 LDAS-PDPEGQDVVGGFDLSALIERI-----------NYA-------------------IRKYKAKRVSIDSVTAVFQQY 136 (484)
T ss_pred EecC-chhccccccccCCHHHHHHHH-----------HHH-------------------HHHhCCcEEEEeehhHhhhhc
Confidence 1100 000011112222223322221 222 999999999999 6776665
Q ss_pred CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchH--------H-h-hcCeEEEEe
Q 004826 634 PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTT--------A-M-QCDEIIVLE 686 (728)
Q Consensus 634 ~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLst--------i-~-~aD~IiVld 686 (728)
+.. ....+.+.+.++.+. .++|+|+++|..+. + . -||.|+.|+
T Consensus 137 ~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 137 DAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred Cch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 443 345556666555543 58999999998753 1 2 379999887
No 477
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.38 E-value=3.7e-07 Score=100.00 Aligned_cols=88 Identities=27% Similarity=0.332 Sum_probs=66.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCC--CC-CEEEECCEeCCCCCHHHHhcceEEEcCCC-----CCCcccHHHHHH
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT--HS-GSIRIDGQDICEVTLESLRKSIGVVPQDT-----VLFNDTIFHNIR 554 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p--~~-G~I~idG~di~~i~~~~lR~~Ia~V~Qd~-----~LF~gTIreNI~ 554 (728)
++|..|+|+||+||||||+++.|++++.+ .+ +.|....-|+ ++..+.+++..++|+|.. .-|..+|+++++
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999853 33 4666655555 588878877788888864 368899999988
Q ss_pred cCCCC------CCHHH-HHHHHHHh
Q 004826 555 YGRLS------ATEEE-VYDAARRA 572 (728)
Q Consensus 555 ~g~~~------~sdee-i~~A~~~a 572 (728)
. +|+ .-|.| +..|++.|
T Consensus 211 ~-~Pd~i~vGEiRd~et~~~al~aa 234 (358)
T TIGR02524 211 R-KPHAILVGEARDAETISAALEAA 234 (358)
T ss_pred c-CCCEEeeeeeCCHHHHHHHHHHH
Confidence 6 454 23444 55666664
No 478
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.33 E-value=5.4e-07 Score=89.84 Aligned_cols=55 Identities=25% Similarity=0.344 Sum_probs=48.6
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~ 542 (728)
|+.++|+||||||||||+++|++.+.| .+.+++..+........++.+++++|+.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 789999999999999999999998876 5888888888877777888899999984
No 479
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.32 E-value=1.4e-05 Score=97.13 Aligned_cols=203 Identities=19% Similarity=0.251 Sum_probs=109.3
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce-----EEEcCCCCCC-----cc
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI-----GVVPQDTVLF-----ND 547 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I-----a~V~Qd~~LF-----~g 547 (728)
+||.+.++..++|+|+|||||||+++.|++.+....+.|.+-+.+-. ...+-+.+ -+=+-.+.=| .+
T Consensus 439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~~---~~~~~~a~gG~y~~i~~~~~~~~NPf~l~~ 515 (800)
T PRK13898 439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDRG---AEIFIRALNGVYTVIEPRLKCNFNPLQLDD 515 (800)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCcC---HHHHHHhcCCEEEEecCCCCcccCCCCCCC
Confidence 46788888999999999999999999999988888888887654432 11121111 1111111111 12
Q ss_pred cHHHHHHc-----------CCCCCCHH---HHHHHHHHh--------ccHHHHHhCCCc----ccchhh---ccccccch
Q 004826 548 TIFHNIRY-----------GRLSATEE---EVYDAARRA--------AIHDTIMNFPAK----YSTVVG---ERGLKGRS 598 (728)
Q Consensus 548 TIreNI~~-----------g~~~~sde---ei~~A~~~a--------~l~~~I~~LP~G----~dT~vg---E~G~~~~~ 598 (728)
|- +|+.+ +....+++ .|.+|++.+ .+.++.+.|+.. +...+. .+|..|.
T Consensus 516 ~~-~~~~~l~~~l~~l~~~~~~~lt~~~~~~I~~av~~~~~~~~~~rtl~~l~~~l~~~~~~~L~~~L~~~~~~G~~g~- 593 (800)
T PRK13898 516 TS-ENRTFLMEWLKVLVTSNGESLTAQDIKRINDAVEGNFKLKKEDRRLSNLVAFLGIDGPNTLAGRIAMWHGKGSHAA- 593 (800)
T ss_pred Ch-HHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHhCChhhCcHHHHHHHhCcCCchHHHHHHHHHhcCCCcEE-
Confidence 32 23221 11223433 344555442 223444444321 111110 1121100
Q ss_pred hHHHhhh---hc--cCC-CCCC---CC-hhHHHHHH-------HHHHhccCCCEEEEeCcCcCCC-HHHHHHHHHHHHHH
Q 004826 599 LLYIQKK---LE--RRP-LFVS---LS-GGEKQRVA-------LARAFLKAPPILLCDEATSALD-STTEAEILNALKSL 660 (728)
Q Consensus 599 ~~~~~~~---~~--~~~-~~~~---LS-GGQrQRIa-------IARALl~~p~ILILDEaTSaLD-~~tE~~I~~~L~~l 660 (728)
+-.+. ++ ... ...+ |. -.+...+. |.+.+-.+|.++++|||...|| +...+.+.+.+++.
T Consensus 594 --~Fd~~~d~l~~~~~~~~~fdl~~l~~~~~~~~~vl~yl~~ri~~~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~ 671 (800)
T PRK13898 594 --IFDNEEDLLDFQKARVFGFEMGELLKDPVSLAPVLLYLFHRISISLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVL 671 (800)
T ss_pred --eecCCccccCCCCCcEEEEEchhhcCChhhHHHHHHHHHHHHHHHhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHH
Confidence 00000 00 000 0011 11 12221111 2234567899999999999999 88888888888776
Q ss_pred c-CCCeEEEeccCchH----------HhhcCeEEEEeC
Q 004826 661 A-NNRTSIFIAHRLTT----------AMQCDEIIVLEN 687 (728)
Q Consensus 661 ~-~~~TvIvIaHRLst----------i~~aD~IiVld~ 687 (728)
. .|..++++||.++. +++|+--|.|-|
T Consensus 672 RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 672 RKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 4 57899999999866 455665556644
No 480
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.31 E-value=5.1e-07 Score=89.32 Aligned_cols=66 Identities=32% Similarity=0.378 Sum_probs=47.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhc-ceEEEcCCCCC-CcccHHHHHHc
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQDTVL-FNDTIFHNIRY 555 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~-~Ia~V~Qd~~L-F~gTIreNI~~ 555 (728)
+||.++|+|+|||||||+++.|++++.| +.+||.++... ..+|+ ..++.+|+... ...++.+|+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~--~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPA--KNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCH--hHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999999887 68999887432 33333 35666666432 33344455443
No 481
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.30 E-value=3.6e-07 Score=90.30 Aligned_cols=78 Identities=29% Similarity=0.417 Sum_probs=57.4
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCC------------CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreN 552 (728)
|++++|+||||||||||++.|++.++ |..|+ ++|++..-++.+.+.+.+ +++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 34444 466666666666766654 57888888888888
Q ss_pred HHcCCCCCCHHHHHHHHHH
Q 004826 553 IRYGRLSATEEEVYDAARR 571 (728)
Q Consensus 553 I~~g~~~~sdeei~~A~~~ 571 (728)
.|| .+.+.+.++++.
T Consensus 76 -~y~---~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 -YYG---TPKSPVEEALAA 90 (180)
T ss_pred -eeC---CcHHHHHHHHHC
Confidence 476 345556555443
No 482
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=98.30 E-value=0.0023 Score=65.17 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004826 122 EFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTA 158 (728)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~ 158 (728)
.+++++.+...+.++..++.++.|++++..||.+..+
T Consensus 7 ~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g 43 (237)
T PF13748_consen 7 RHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNG 43 (237)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4577888888888899999999999999999998753
No 483
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.27 E-value=2.6e-07 Score=87.62 Aligned_cols=72 Identities=32% Similarity=0.505 Sum_probs=57.3
Q ss_pred EEEECCCCccHHHHHHHHhcCCCC-------------CCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHH
Q 004826 488 VAIVGTSGSGKSTILRLLFRSFDT-------------HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 488 vAIVG~SGSGKSTL~~LL~gly~p-------------~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 554 (728)
++|+||||||||||+++|++.+++ ..|+ ++|++..-++.+++++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999764 4454 58888888888888874 568889999999988 5
Q ss_pred cCCCCCCHHHHHHH
Q 004826 555 YGRLSATEEEVYDA 568 (728)
Q Consensus 555 ~g~~~~sdeei~~A 568 (728)
||.+ .+++.++
T Consensus 76 yg~~---~~~i~~~ 86 (137)
T cd00071 76 YGTS---KAAVEEA 86 (137)
T ss_pred ecCc---HHHHHHH
Confidence 7754 4444433
No 484
>PRK15494 era GTPase Era; Provisional
Probab=98.22 E-value=6.5e-07 Score=97.78 Aligned_cols=54 Identities=26% Similarity=0.268 Sum_probs=50.2
Q ss_pred CCceEEEEEEEEEecCCceeeeeeeEEEeCCc-------EEEEECCCCccHHHHHHHHhcC
Q 004826 455 KGGSIQFDNVHFSYLTERKILDGVSFVVPAGK-------SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 455 ~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge-------~vAIVG~SGSGKSTL~~LL~gl 508 (728)
..|.+++++|+|+|+...+++++++|++++|+ +|+|||.+|+|||||++.|.|-
T Consensus 15 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 15 FKGDTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hCCccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 35789999999999977789999999999999 9999999999999999999875
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.22 E-value=9.9e-07 Score=88.72 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=21.7
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++|+|+||||||||++.|.+++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 486
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.22 E-value=2.1e-06 Score=88.44 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=31.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHh-cCCCCCCCEEEECC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLF-RSFDTHSGSIRIDG 520 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~-gly~p~~G~I~idG 520 (728)
-+++|+.+.|.|++|||||||+..++ ....+.++.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 58999999999999999999987543 33455566677765
No 487
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.21 E-value=3e-06 Score=106.83 Aligned_cols=44 Identities=34% Similarity=0.376 Sum_probs=37.1
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHH-hcCCCCCCCEEEECCE
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLL-FRSFDTHSGSIRIDGQ 521 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL-~gly~p~~G~I~idG~ 521 (728)
+++..++++.++|+|++|+|||||++.+ .++-+..+|.+.+++.
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~ 244 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRA 244 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecc
Confidence 5677888999999999999999999999 4444556899999863
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.20 E-value=2.3e-06 Score=84.52 Aligned_cols=62 Identities=21% Similarity=0.324 Sum_probs=47.0
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEE-----------CCEeCCCCCHHHHh-----cceEEEcCCCCCCcc
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI-----------DGQDICEVTLESLR-----KSIGVVPQDTVLFND 547 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~i-----------dG~di~~i~~~~lR-----~~Ia~V~Qd~~LF~g 547 (728)
|+.++|+|+||||||||++.|++.+.+. |.+.+ +|.+....+.+.+. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 65554 77777777766653 358888887655443
No 489
>PLN02796 D-glycerate 3-kinase
Probab=98.19 E-value=5.5e-07 Score=96.99 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=54.3
Q ss_pred ceeeeeeeEEE---eCCcE-----EEEECCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCCHHHHhc
Q 004826 472 RKILDGVSFVV---PAGKS-----VAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVTLESLRK 533 (728)
Q Consensus 472 ~~vL~~isl~I---~~Ge~-----vAIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~i~~~~lR~ 533 (728)
..+++++++.+ ++|+. +||+|+||||||||++.|.+++++. .|.|.+||..+.......+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 45888999888 67887 9999999999999999999999875 688999999988877777776
No 490
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.17 E-value=2.7e-06 Score=85.88 Aligned_cols=99 Identities=17% Similarity=0.273 Sum_probs=63.9
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCC--CHHH
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA--TEEE 564 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~--sdee 564 (728)
+++|+|++|||||||++.+.+.+.+..| +.+-..|........+....++++|+..+. +..| |.+.- ..+-
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~---g~~~~~~~~~~ 75 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILG---VETG---GCPHTAIREDA 75 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceeh---hhcC---CCccceeccCH
Confidence 6899999999999999999999887655 555556776666677777789999987652 1111 12211 1111
Q ss_pred HHHHHHHhccHHHHHhCCCcccchhhccccc
Q 004826 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (728)
Q Consensus 565 i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~ 595 (728)
.. ...++.+.+.++|++-.+.|+-.|..
T Consensus 76 ~~---~~~~L~~l~~~~~~~D~iiIEt~G~~ 103 (199)
T TIGR00101 76 SM---NLEAVAEMEARFPPLEMVFIESGGDN 103 (199)
T ss_pred HH---HHHHHHHHHhcCCCCCEEEEECCCCC
Confidence 11 22334556667776555667666744
No 491
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.17 E-value=2.6e-06 Score=108.12 Aligned_cols=60 Identities=28% Similarity=0.442 Sum_probs=54.0
Q ss_pred CCCChhHHHHHH----HHHH--------hccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch
Q 004826 613 VSLSGGEKQRVA----LARA--------FLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674 (728)
Q Consensus 613 ~~LSGGQrQRIa----IARA--------Ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs 674 (728)
..||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++|+++|++-
T Consensus 1246 ~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~W 1317 (1353)
T TIGR02680 1246 GPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREW 1317 (1353)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchh
Confidence 459999999996 6866 55799999999999999999999999999886 789999999984
No 492
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.17 E-value=1.9e-06 Score=96.22 Aligned_cols=101 Identities=21% Similarity=0.355 Sum_probs=73.0
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEEEE---CCEeCCCCCHHHHh---cceEEE-----cC
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRI---DGQDICEVTLESLR---KSIGVV-----PQ 540 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I~i---dG~di~~i~~~~lR---~~Ia~V-----~Q 540 (728)
.+++++ |+|.+||+++|+|+||+|||||++.|+|+.++ +.|.|.+ .|.++.++..+.++ ...++| +|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 478887 99999999999999999999999999998844 4466766 55777777666665 235555 99
Q ss_pred CCC------CCcccHHHHHHcCCCCC-----CHHHHHHHHHHhcc
Q 004826 541 DTV------LFNDTIFHNIRYGRLSA-----TEEEVYDAARRAAI 574 (728)
Q Consensus 541 d~~------LF~gTIreNI~~g~~~~-----sdeei~~A~~~a~l 574 (728)
+|. ....+|.|.++.-..+. +.....+|++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 773 34458888886543221 23455666666665
No 493
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=98.10 E-value=3.5e-06 Score=93.74 Aligned_cols=58 Identities=33% Similarity=0.448 Sum_probs=51.7
Q ss_pred ecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC
Q 004826 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (728)
Q Consensus 468 Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i 526 (728)
|..+..+++++ |++.+|++++|+|++|+|||||+++|+++.+|+.|.|.+.|..-++.
T Consensus 121 ~~tGi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev 178 (413)
T TIGR03497 121 LETGIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREV 178 (413)
T ss_pred ccccceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHH
Confidence 44455789999 99999999999999999999999999999999999999888766553
No 494
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.09 E-value=2.3e-06 Score=86.19 Aligned_cols=56 Identities=27% Similarity=0.394 Sum_probs=43.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCCCCHHHHhcceEEEcCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLESLRKSIGVVPQDT 542 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~ 542 (728)
++|+.++|+|+||||||||+++|.+.+.+ ..|.+.+||.++++ .+...++|++|+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~----~~~~~~~~~~~~~ 78 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRH----GLCSDLGFSDADR 78 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHh----hhhhcCCcCcccH
Confidence 67899999999999999999999986544 45789999977662 2333466666664
No 495
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.08 E-value=1.8e-06 Score=87.63 Aligned_cols=44 Identities=32% Similarity=0.544 Sum_probs=36.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcc
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND 547 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g 547 (728)
++|+.++|+|+||||||||++.|.+++++ ..+++++||.++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccCh
Confidence 68999999999999999999999998763 246677777776643
No 496
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.07 E-value=5.9e-06 Score=83.87 Aligned_cols=66 Identities=24% Similarity=0.409 Sum_probs=46.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcc---cH--HHHHHcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND---TI--FHNIRYGR 557 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g---TI--reNI~~g~ 557 (728)
+++..|+|+|+||||||||++.|.+.+. ...+.+++||.+.++. +. +.++.++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4688999999999999999999999872 1368889999987754 33 33445555
Q ss_pred CCC-CHHHHHHHH
Q 004826 558 LSA-TEEEVYDAA 569 (728)
Q Consensus 558 ~~~-sdeei~~A~ 569 (728)
|++ +.+.+.+.+
T Consensus 63 ~~~~~~~~l~~~l 75 (209)
T PRK05480 63 PDAFDHDLLIEHL 75 (209)
T ss_pred cccccHHHHHHHH
Confidence 543 333444443
No 497
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.04 E-value=1.8e-05 Score=93.01 Aligned_cols=40 Identities=23% Similarity=0.410 Sum_probs=32.8
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCC--------EEEECCEeCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSG--------SIRIDGQDIC 524 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G--------~I~idG~di~ 524 (728)
.+.+.|+||+|+||||+++++.++..+.+| -|.+||.++.
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~ 222 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR 222 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc
Confidence 356999999999999999999998865544 4888887653
No 498
>PRK09183 transposase/IS protein; Provisional
Probab=98.03 E-value=7.5e-06 Score=86.05 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=38.5
Q ss_pred EEEEEEEEecCC--c---eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 460 QFDNVHFSYLTE--R---KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 460 ~f~nVsF~Y~~~--~---~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.+++..|++.+. + ..|.+++| +++|+.+.|+||+|+|||+|+..|.....
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345555665432 1 35778888 99999999999999999999999976544
No 499
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.03 E-value=6.1e-06 Score=88.93 Aligned_cols=57 Identities=30% Similarity=0.430 Sum_probs=49.4
Q ss_pred ecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC
Q 004826 468 YLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (728)
Q Consensus 468 Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (728)
|..+..+++++ +++.+||+++|+|+||+|||||++.|+|+.+|+.|.+..-|.+-++
T Consensus 53 l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~e 109 (326)
T cd01136 53 LPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGRE 109 (326)
T ss_pred cCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCcc
Confidence 44456799999 9999999999999999999999999999999999988876644333
No 500
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.02 E-value=8.9e-05 Score=90.28 Aligned_cols=64 Identities=31% Similarity=0.411 Sum_probs=49.3
Q ss_pred HHHhccCCCEEEEeCcCcCCC-HHHHHHHHHHHHHH-cCCCeEEEeccCchHH----------hhcCeEEEEeCCE
Q 004826 626 ARAFLKAPPILLCDEATSALD-STTEAEILNALKSL-ANNRTSIFIAHRLTTA----------MQCDEIIVLENGK 689 (728)
Q Consensus 626 ARALl~~p~ILILDEaTSaLD-~~tE~~I~~~L~~l-~~~~TvIvIaHRLsti----------~~aD~IiVld~G~ 689 (728)
.+.+-.+|.++++|||++.|| +...+.+.+.++.. ..+.+++++||.++.+ .+|+--++|.+.+
T Consensus 629 ~~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~~ 704 (811)
T PRK13873 629 EDRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNER 704 (811)
T ss_pred HHHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCch
Confidence 344556899999999999999 67788888887765 3578999999998744 4566666666654
Done!