Query 004826
Match_columns 728
No_of_seqs 368 out of 2729
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 07:01:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1E-101 4E-106 967.3 71.6 503 193-715 150-655 (1321)
2 4f4c_A Multidrug resistance pr 100.0 1.6E-99 5E-104 947.8 52.9 504 193-716 808-1319(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 6.6E-96 2E-100 848.9 70.3 569 109-716 12-581 (587)
4 4a82_A Cystic fibrosis transme 100.0 5.5E-96 2E-100 848.9 68.4 575 108-714 2-577 (578)
5 3qf4_B Uncharacterized ABC tra 100.0 5.6E-96 2E-100 851.7 64.8 572 105-716 22-593 (598)
6 3b5x_A Lipid A export ATP-bind 100.0 3.4E-93 1.2E-97 826.4 78.8 569 105-714 10-580 (582)
7 3b60_A Lipid A export ATP-bind 100.0 3E-93 1E-97 826.9 73.1 569 105-714 10-580 (582)
8 2yl4_A ATP-binding cassette SU 100.0 1.2E-92 4.2E-97 823.8 75.3 575 106-716 5-586 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 3.5E-91 1.2E-95 870.5 61.3 581 108-715 35-627 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 5.2E-85 1.8E-89 815.0 57.4 562 125-716 705-1273(1284)
11 3nh6_A ATP-binding cassette SU 100.0 1.3E-73 4.5E-78 608.1 29.5 281 420-719 15-295 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 9.8E-60 3.4E-64 488.4 31.1 238 457-713 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 1.6E-58 5.4E-63 483.0 29.2 239 457-715 16-256 (260)
14 1mv5_A LMRA, multidrug resista 100.0 2.3E-59 7.9E-64 484.8 20.9 237 459-714 2-239 (243)
15 2ixe_A Antigen peptide transpo 100.0 7.3E-58 2.5E-62 480.6 29.2 240 457-715 15-259 (271)
16 3gd7_A Fusion complex of cysti 100.0 5.9E-55 2E-59 478.6 25.1 227 455-702 16-243 (390)
17 2cbz_A Multidrug resistance-as 100.0 1.1E-54 3.9E-59 447.8 24.5 226 458-716 3-232 (237)
18 2pze_A Cystic fibrosis transme 100.0 5.9E-54 2E-58 440.3 26.5 221 457-710 5-227 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 4.8E-52 1.6E-56 436.5 23.6 221 458-708 7-240 (275)
20 3tui_C Methionine import ATP-b 100.0 1.9E-51 6.5E-56 445.1 24.9 224 458-711 24-265 (366)
21 3tif_A Uncharacterized ABC tra 100.0 1.4E-51 4.9E-56 424.2 21.5 213 459-700 2-233 (235)
22 1ji0_A ABC transporter; ATP bi 100.0 8.4E-51 2.9E-55 419.8 26.4 219 458-702 6-229 (240)
23 2bbs_A Cystic fibrosis transme 100.0 1.3E-50 4.5E-55 428.8 23.2 217 457-710 39-256 (290)
24 4g1u_C Hemin import ATP-bindin 100.0 3.8E-50 1.3E-54 420.7 25.6 221 458-710 11-245 (266)
25 2olj_A Amino acid ABC transpor 100.0 7.1E-50 2.4E-54 417.6 26.7 215 458-703 24-250 (263)
26 2yz2_A Putative ABC transporte 100.0 1.4E-49 4.8E-54 416.8 25.9 212 459-703 3-229 (266)
27 1vpl_A ABC transporter, ATP-bi 100.0 1.3E-49 4.4E-54 414.2 25.0 213 457-701 14-235 (256)
28 2pcj_A ABC transporter, lipopr 100.0 9.3E-50 3.2E-54 407.8 21.9 208 458-696 4-223 (224)
29 1b0u_A Histidine permease; ABC 100.0 1.5E-49 5.2E-54 415.5 23.8 215 458-703 6-244 (262)
30 3fvq_A Fe(3+) IONS import ATP- 100.0 3.1E-49 1.1E-53 427.7 26.5 215 458-703 4-230 (359)
31 1g6h_A High-affinity branched- 100.0 3.1E-49 1.1E-53 412.2 25.3 211 458-699 7-240 (257)
32 3rlf_A Maltose/maltodextrin im 100.0 2.5E-49 8.4E-54 431.2 24.0 216 458-706 3-229 (381)
33 2qi9_C Vitamin B12 import ATP- 100.0 7.9E-49 2.7E-53 406.6 24.3 217 458-711 4-231 (249)
34 2ihy_A ABC transporter, ATP-bi 100.0 3.2E-49 1.1E-53 416.3 21.4 214 458-702 21-253 (279)
35 2onk_A Molybdate/tungstate ABC 100.0 8.2E-49 2.8E-53 404.5 22.8 209 459-703 2-218 (240)
36 1z47_A CYSA, putative ABC-tran 100.0 7E-49 2.4E-53 425.0 23.3 215 457-703 13-237 (355)
37 2yyz_A Sugar ABC transporter, 100.0 2.4E-48 8.3E-53 421.8 27.1 213 458-703 3-225 (359)
38 2it1_A 362AA long hypothetical 100.0 9.2E-49 3.2E-53 425.5 23.2 213 458-703 3-225 (362)
39 2d2e_A SUFC protein; ABC-ATPas 100.0 1.4E-48 4.8E-53 405.6 21.9 211 458-698 3-230 (250)
40 3d31_A Sulfate/molybdate ABC t 100.0 2.7E-48 9.1E-53 420.1 24.3 211 459-703 2-219 (348)
41 1v43_A Sugar-binding transport 100.0 5.1E-48 1.7E-52 421.2 26.6 213 458-703 11-233 (372)
42 1oxx_K GLCV, glucose, ABC tran 100.0 2.2E-48 7.6E-53 422.1 23.1 215 458-703 3-232 (353)
43 2zu0_C Probable ATP-dependent 100.0 8.5E-48 2.9E-52 403.4 23.2 215 458-701 20-254 (267)
44 1g29_1 MALK, maltose transport 100.0 6.9E-48 2.4E-52 420.8 23.3 213 458-703 3-231 (372)
45 2nq2_C Hypothetical ABC transp 100.0 1.5E-47 5.2E-52 398.2 22.1 208 458-710 4-225 (253)
46 2pjz_A Hypothetical protein ST 100.0 1.2E-47 4E-52 400.8 21.0 206 459-702 2-216 (263)
47 1sgw_A Putative ABC transporte 100.0 4.6E-46 1.6E-50 377.2 15.7 197 457-691 9-211 (214)
48 2v9p_A Replication protein E1; 100.0 2.3E-46 7.8E-51 397.4 -17.4 241 389-715 35-277 (305)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 3.9E-37 1.3E-41 352.4 16.7 200 458-702 287-494 (538)
50 3bk7_A ABC transporter ATP-bin 100.0 5.5E-37 1.9E-41 354.8 16.9 200 458-702 357-564 (607)
51 3ozx_A RNAse L inhibitor; ATP 100.0 1.5E-36 5E-41 346.8 19.0 200 458-701 269-477 (538)
52 2iw3_A Elongation factor 3A; a 100.0 1.2E-36 4.2E-41 363.3 14.2 204 458-695 671-981 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 2.4E-35 8.2E-40 340.5 17.9 200 461-703 349-561 (608)
54 3bk7_A ABC transporter ATP-bin 100.0 8E-36 2.7E-40 345.1 12.5 193 462-688 95-304 (607)
55 3ux8_A Excinuclease ABC, A sub 100.0 1.5E-35 5E-40 348.9 14.4 209 471-708 334-647 (670)
56 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-35 3.5E-40 340.6 10.7 196 459-688 21-234 (538)
57 2iw3_A Elongation factor 3A; a 100.0 9.4E-34 3.2E-38 338.5 27.5 198 457-702 434-636 (986)
58 3ux8_A Excinuclease ABC, A sub 100.0 8.6E-35 2.9E-39 342.4 16.4 204 471-704 30-301 (670)
59 3pih_A Uvrabc system protein A 100.0 3.1E-34 1.1E-38 342.5 18.9 218 458-710 589-911 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 3.5E-33 1.2E-37 322.5 13.8 196 463-690 82-299 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 2.4E-33 8.3E-38 320.3 9.1 193 463-689 4-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 3.5E-32 1.2E-36 322.4 14.7 215 457-706 501-832 (842)
63 4aby_A DNA repair protein RECN 100.0 1E-31 3.6E-36 298.4 16.5 217 458-694 42-381 (415)
64 2r6f_A Excinuclease ABC subuni 100.0 1E-31 3.6E-36 318.4 17.6 217 458-710 629-951 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.2E-35 7.6E-40 330.8 -14.0 191 458-701 118-338 (460)
66 2ygr_A Uvrabc system protein A 100.0 1.4E-30 4.8E-35 309.9 18.4 219 457-711 646-970 (993)
67 1e69_A Chromosome segregation 100.0 4.4E-29 1.5E-33 268.5 14.1 219 458-698 5-310 (322)
68 2pt7_A CAG-ALFA; ATPase, prote 99.9 6.2E-32 2.1E-36 291.4 -17.6 206 393-690 75-292 (330)
69 1z6g_A Guanylate kinase; struc 99.9 1.5E-31 5E-36 271.9 -16.5 166 473-687 11-193 (218)
70 3b85_A Phosphate starvation-in 99.9 2E-29 6.8E-34 254.2 -6.2 160 471-690 12-172 (208)
71 4gp7_A Metallophosphoesterase; 99.9 1.3E-27 4.4E-32 233.5 3.2 149 477-682 1-168 (171)
72 2dpy_A FLII, flagellum-specifi 99.9 1.7E-28 5.6E-33 273.7 -8.0 195 457-701 130-344 (438)
73 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 4E-25 1.4E-29 241.5 18.1 79 614-692 279-364 (365)
74 1ye8_A Protein THEP1, hypothet 99.9 2E-27 6.9E-32 233.8 -2.8 147 487-692 2-159 (178)
75 2eyu_A Twitching motility prot 99.9 7.6E-29 2.6E-33 258.6 -18.9 184 459-675 6-242 (261)
76 1tq4_A IIGP1, interferon-induc 99.9 1E-26 3.4E-31 256.5 -9.5 168 472-683 36-248 (413)
77 2ewv_A Twitching motility prot 99.9 3.9E-27 1.3E-31 258.0 -13.6 175 473-675 126-353 (372)
78 3aez_A Pantothenate kinase; tr 99.9 8.5E-27 2.9E-31 249.2 -11.6 174 456-688 41-245 (312)
79 2f1r_A Molybdopterin-guanine d 99.9 2.5E-26 8.4E-31 224.4 -9.0 111 486-636 3-125 (171)
80 1lvg_A Guanylate kinase, GMP k 99.9 3.5E-26 1.2E-30 228.7 -13.3 169 482-701 1-183 (198)
81 3b9q_A Chloroplast SRP recepto 99.9 2.1E-24 7.2E-29 229.6 -1.4 175 476-691 91-285 (302)
82 2o5v_A DNA replication and rep 99.9 3E-22 1E-26 217.5 15.0 82 614-700 265-355 (359)
83 3sop_A Neuronal-specific septi 99.9 4.8E-24 1.7E-28 223.4 -0.4 150 487-677 4-154 (270)
84 2gza_A Type IV secretion syste 99.9 1.6E-26 5.6E-31 252.1 -20.1 220 384-628 54-301 (361)
85 2obl_A ESCN; ATPase, hydrolase 99.9 3.5E-23 1.2E-27 224.1 1.1 193 458-699 45-253 (347)
86 2og2_A Putative signal recogni 99.9 1.8E-23 6.1E-28 226.7 -1.3 174 477-691 149-342 (359)
87 1znw_A Guanylate kinase, GMP k 99.8 6.3E-24 2.2E-28 213.5 -7.4 175 472-686 9-202 (207)
88 2i3b_A HCR-ntpase, human cance 99.8 1.4E-23 4.9E-28 208.2 -5.7 171 485-710 1-181 (189)
89 3pih_A Uvrabc system protein A 99.8 2E-21 6.7E-26 232.3 4.1 89 615-703 465-562 (916)
90 1lw7_A Transcriptional regulat 99.8 7E-23 2.4E-27 223.9 -7.9 148 474-642 157-329 (365)
91 1cr0_A DNA primase/helicase; R 99.8 2.8E-21 9.6E-26 204.8 4.5 181 473-690 23-237 (296)
92 2o8b_B DNA mismatch repair pro 99.8 6E-21 2.1E-25 231.8 7.8 171 457-697 749-938 (1022)
93 1tf7_A KAIC; homohexamer, hexa 99.8 1.2E-22 3.9E-27 232.6 -7.0 171 467-687 20-209 (525)
94 3asz_A Uridine kinase; cytidin 99.8 6.3E-23 2.2E-27 206.1 -8.2 144 482-673 3-161 (211)
95 4ad8_A DNA repair protein RECN 99.8 1.7E-20 5.9E-25 214.2 10.5 76 613-688 395-473 (517)
96 2jeo_A Uridine-cytidine kinase 99.8 4.9E-22 1.7E-26 205.1 -4.8 169 470-702 10-188 (245)
97 2vf7_A UVRA2, excinuclease ABC 99.8 4E-20 1.4E-24 219.3 7.4 180 493-702 270-476 (842)
98 3qkt_A DNA double-strand break 99.8 7.1E-19 2.4E-23 190.2 16.2 77 614-690 248-333 (339)
99 1tf7_A KAIC; homohexamer, hexa 99.8 3.3E-20 1.1E-24 212.2 5.3 169 459-689 258-444 (525)
100 4a74_A DNA repair and recombin 99.8 2.1E-20 7.1E-25 189.5 -0.8 165 461-689 4-201 (231)
101 1w1w_A Structural maintenance 99.8 1.2E-18 4.1E-23 194.5 12.2 74 613-686 332-410 (430)
102 1ewq_A DNA mismatch repair pro 99.8 2.1E-19 7.2E-24 212.2 6.0 145 456-679 548-704 (765)
103 3thx_A DNA mismatch repair pro 99.8 2.5E-18 8.6E-23 206.5 13.8 165 457-699 630-811 (934)
104 2r6f_A Excinuclease ABC subuni 99.8 2.3E-19 8E-24 213.1 4.6 88 615-702 505-601 (972)
105 1pzn_A RAD51, DNA repair and r 99.8 3.8E-20 1.3E-24 200.9 -2.1 181 462-700 111-314 (349)
106 1pui_A ENGB, probable GTP-bind 99.7 2.6E-20 8.9E-25 186.1 -3.4 169 459-661 4-197 (210)
107 3szr_A Interferon-induced GTP- 99.7 1.7E-20 5.9E-25 217.7 -6.5 189 458-700 10-236 (608)
108 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 4.8E-18 1.7E-22 161.6 11.4 77 614-690 57-142 (148)
109 1odf_A YGR205W, hypothetical 3 99.7 1E-20 3.6E-25 199.9 -7.9 130 483-649 29-169 (290)
110 1rj9_A FTSY, signal recognitio 99.7 5E-19 1.7E-23 188.2 4.8 150 483-675 100-260 (304)
111 2ygr_A Uvrabc system protein A 99.7 1.3E-17 4.5E-22 198.8 15.2 88 615-702 522-618 (993)
112 2ehv_A Hypothetical protein PH 99.7 2.2E-19 7.4E-24 184.3 -0.8 181 458-686 6-206 (251)
113 2qag_C Septin-7; cell cycle, c 99.7 1.8E-19 6.2E-24 199.2 -2.1 166 457-676 10-180 (418)
114 2qnr_A Septin-2, protein NEDD5 99.7 8.3E-19 2.8E-23 186.5 -1.2 165 462-675 2-169 (301)
115 3jvv_A Twitching mobility prot 99.7 4.6E-18 1.6E-22 184.5 3.3 146 462-688 92-246 (356)
116 3kta_B Chromosome segregation 99.7 6.3E-17 2.2E-21 157.8 11.0 77 614-690 64-146 (173)
117 3c8u_A Fructokinase; YP_612366 99.7 3E-20 1E-24 186.8 -15.6 135 482-659 19-168 (208)
118 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.6E-17 5.4E-22 168.0 3.0 166 471-688 8-192 (235)
119 3thx_B DNA mismatch repair pro 99.6 1.6E-16 5.4E-21 190.4 9.4 158 457-682 639-805 (918)
120 1zp6_A Hypothetical protein AT 99.6 1.3E-17 4.4E-22 164.4 -1.0 161 481-682 5-169 (191)
121 1nij_A Hypothetical protein YJ 99.6 2.8E-18 9.5E-23 183.9 -7.0 151 486-673 5-189 (318)
122 2cvh_A DNA repair and recombin 99.6 2.5E-16 8.5E-21 158.2 6.8 151 473-688 7-185 (220)
123 1s96_A Guanylate kinase, GMP k 99.6 4.1E-17 1.4E-21 165.5 -0.1 143 481-702 12-161 (219)
124 2qag_B Septin-6, protein NEDD5 99.6 5.9E-17 2E-21 178.5 0.9 180 458-671 16-217 (427)
125 1nlf_A Regulatory protein REPA 99.6 1.1E-15 3.9E-20 160.3 8.5 151 481-676 26-184 (279)
126 1wb9_A DNA mismatch repair pro 99.6 4.1E-16 1.4E-20 185.2 4.9 165 457-694 576-751 (800)
127 2qm8_A GTPase/ATPase; G protei 99.5 3.2E-17 1.1E-21 177.0 -12.4 193 459-661 30-259 (337)
128 1n0w_A DNA repair protein RAD5 99.5 1.1E-14 3.7E-19 148.6 6.9 146 481-688 20-209 (243)
129 2yhs_A FTSY, cell division pro 99.5 2.2E-14 7.4E-19 160.1 5.9 154 476-671 284-447 (503)
130 2oap_1 GSPE-2, type II secreti 99.5 2.8E-16 9.7E-21 178.2 -10.1 173 473-680 248-458 (511)
131 2bdt_A BH3686; alpha-beta prot 99.5 8.4E-17 2.9E-21 158.6 -12.8 170 485-700 2-183 (189)
132 1htw_A HI0065; nucleotide-bind 99.5 3E-16 1E-20 150.9 -9.2 88 462-556 11-99 (158)
133 3e70_C DPA, signal recognition 99.5 2.8E-14 9.5E-19 153.1 5.0 166 481-691 125-307 (328)
134 3auy_A DNA double-strand break 99.4 2.1E-13 7.1E-18 149.1 10.9 73 614-686 280-359 (371)
135 1p9r_A General secretion pathw 99.4 3.2E-16 1.1E-20 173.4 -11.8 129 473-637 157-314 (418)
136 1sxj_E Activator 1 40 kDa subu 99.4 6.6E-14 2.3E-18 151.2 6.4 138 486-675 37-176 (354)
137 2rcn_A Probable GTPase ENGC; Y 99.4 1.3E-13 4.6E-18 148.9 5.4 123 473-630 204-329 (358)
138 3lda_A DNA repair protein RAD5 99.4 1.4E-13 4.7E-18 151.5 5.5 147 481-689 174-364 (400)
139 2bbw_A Adenylate kinase 4, AK4 99.4 9.7E-15 3.3E-19 150.2 -3.9 170 484-687 26-218 (246)
140 3lnc_A Guanylate kinase, GMP k 99.3 1.2E-15 4.1E-20 155.5 -14.9 148 473-661 15-177 (231)
141 1cke_A CK, MSSA, protein (cyti 99.3 2.2E-14 7.5E-19 145.1 -6.9 129 484-643 4-151 (227)
142 3ec2_A DNA replication protein 99.3 1E-12 3.5E-17 128.2 3.6 45 630-674 98-144 (180)
143 2yv5_A YJEQ protein; hydrolase 99.3 3.3E-13 1.1E-17 143.4 -0.9 115 480-627 160-300 (302)
144 2x8a_A Nuclear valosin-contain 99.3 9.5E-15 3.2E-19 153.1 -12.7 145 472-658 33-191 (274)
145 2kjq_A DNAA-related protein; s 99.3 2.7E-12 9.2E-17 122.0 5.2 44 473-522 29-74 (149)
146 1udx_A The GTP-binding protein 99.2 2E-12 7E-17 142.8 1.8 153 475-671 147-306 (416)
147 4e22_A Cytidylate kinase; P-lo 99.2 6.6E-13 2.2E-17 137.3 -3.1 110 474-593 19-146 (252)
148 3tr0_A Guanylate kinase, GMP k 99.2 9E-12 3.1E-16 123.6 4.4 178 479-682 1-198 (205)
149 1sq5_A Pantothenate kinase; P- 99.2 4.2E-13 1.4E-17 142.9 -6.2 91 457-555 36-151 (308)
150 1u0l_A Probable GTPase ENGC; p 99.2 3.9E-12 1.3E-16 135.0 1.2 103 480-583 164-290 (301)
151 1ls1_A Signal recognition part 99.1 2.3E-11 7.9E-16 128.7 5.4 141 459-669 77-218 (295)
152 1vma_A Cell division protein F 99.1 5.2E-11 1.8E-15 126.4 7.5 98 478-643 97-197 (306)
153 3a00_A Guanylate kinase, GMP k 99.1 4.6E-12 1.6E-16 124.6 -3.0 128 485-640 1-169 (186)
154 3euj_A Chromosome partition pr 99.1 4.4E-11 1.5E-15 133.9 3.9 65 460-528 8-72 (483)
155 2px0_A Flagellar biosynthesis 99.0 1.8E-10 6.2E-15 121.8 7.4 139 483-693 103-247 (296)
156 3ney_A 55 kDa erythrocyte memb 99.0 3.2E-11 1.1E-15 119.7 -0.5 82 480-570 14-108 (197)
157 1iy2_A ATP-dependent metallopr 99.0 5.5E-13 1.9E-17 139.6 -14.3 137 461-643 52-196 (278)
158 2ius_A DNA translocase FTSK; n 99.0 5E-11 1.7E-15 134.4 -0.7 167 477-674 159-343 (512)
159 1ixz_A ATP-dependent metallopr 98.9 7.8E-13 2.7E-17 136.4 -15.1 140 459-644 26-173 (254)
160 1oix_A RAS-related protein RAB 98.9 1.4E-11 4.8E-16 121.3 -6.6 37 621-659 152-188 (191)
161 1in4_A RUVB, holliday junction 98.9 1.5E-12 5.2E-17 140.2 -14.9 90 463-554 23-123 (334)
162 1t9h_A YLOQ, probable GTPase E 98.9 2E-10 6.9E-15 121.7 1.7 73 480-554 168-248 (307)
163 1qhl_A Protein (cell division 98.9 5E-11 1.7E-15 121.1 -3.7 75 458-541 9-91 (227)
164 1kgd_A CASK, peripheral plasma 98.9 1.4E-10 4.9E-15 113.2 -1.4 81 483-570 3-94 (180)
165 3k1j_A LON protease, ATP-depen 98.9 1E-10 3.5E-15 135.8 -3.1 157 471-659 46-227 (604)
166 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.2E-11 4.2E-16 135.3 -11.3 168 481-696 16-208 (392)
167 2qt1_A Nicotinamide riboside k 98.8 3.9E-10 1.3E-14 112.3 0.2 75 480-580 16-90 (207)
168 2dr3_A UPF0273 protein PH0284; 98.8 6.5E-10 2.2E-14 113.1 1.1 69 619-687 113-196 (247)
169 2dy1_A Elongation factor G; tr 98.8 9.2E-10 3.1E-14 129.0 2.2 75 479-554 3-79 (665)
170 2r6a_A DNAB helicase, replicat 98.8 1.9E-08 6.7E-13 112.6 10.7 178 473-691 191-402 (454)
171 2zr9_A Protein RECA, recombina 98.7 2E-08 6.9E-13 108.5 9.8 75 621-695 126-237 (349)
172 1svm_A Large T antigen; AAA+ f 98.7 7.3E-11 2.5E-15 128.7 -10.3 143 472-643 156-312 (377)
173 3tau_A Guanylate kinase, GMP k 98.6 1.3E-09 4.3E-14 109.1 -2.7 72 483-558 6-88 (208)
174 2f9l_A RAB11B, member RAS onco 98.6 5.7E-09 1.9E-13 102.9 1.4 36 623-660 130-165 (199)
175 3nwj_A ATSK2; P loop, shikimat 98.6 2.8E-09 9.5E-14 109.9 -1.3 52 458-509 17-72 (250)
176 2j41_A Guanylate kinase; GMP, 98.6 4.3E-09 1.5E-13 104.2 -0.8 84 480-570 1-95 (207)
177 3kta_A Chromosome segregation 98.6 5.4E-09 1.9E-13 101.6 -0.6 99 476-575 18-136 (182)
178 3cr8_A Sulfate adenylyltranfer 98.6 2.3E-09 7.8E-14 122.4 -4.4 89 480-573 364-468 (552)
179 2qtf_A Protein HFLX, GTP-bindi 98.5 9E-08 3.1E-12 104.0 5.5 144 487-660 181-351 (364)
180 3uie_A Adenylyl-sulfate kinase 98.5 3.7E-09 1.3E-13 104.9 -5.5 52 472-524 12-65 (200)
181 4eun_A Thermoresistant glucoki 98.4 2.1E-08 7E-13 99.4 -0.3 62 479-545 23-84 (200)
182 1zu4_A FTSY; GTPase, signal re 98.4 5E-08 1.7E-12 104.1 2.2 71 474-544 94-174 (320)
183 3ice_A Transcription terminati 98.4 3E-08 1E-12 106.9 -0.2 80 456-535 131-226 (422)
184 3t34_A Dynamin-related protein 98.4 2.3E-07 8E-12 100.5 6.7 46 473-521 25-72 (360)
185 2dhr_A FTSH; AAA+ protein, hex 98.3 7.5E-09 2.6E-13 116.8 -7.0 88 461-553 43-132 (499)
186 1jjv_A Dephospho-COA kinase; P 98.3 1.9E-07 6.4E-12 92.6 3.6 69 615-686 60-131 (206)
187 3tqc_A Pantothenate kinase; bi 98.3 8E-09 2.7E-13 110.1 -7.0 61 472-551 73-141 (321)
188 3hr8_A Protein RECA; alpha and 98.3 2.6E-07 9E-12 99.7 4.5 60 481-543 57-117 (356)
189 2e87_A Hypothetical protein PH 98.3 7.8E-07 2.7E-11 96.3 8.0 59 615-674 232-293 (357)
190 3vaa_A Shikimate kinase, SK; s 98.3 2.6E-07 9E-12 91.3 3.4 43 467-509 5-49 (199)
191 2ce7_A Cell division protein F 98.3 6E-07 2.1E-11 100.7 6.6 60 617-676 93-167 (476)
192 2ffh_A Protein (FFH); SRP54, s 98.3 1.7E-06 5.8E-11 95.5 9.2 149 476-671 91-246 (425)
193 2xau_A PRE-mRNA-splicing facto 98.2 8.9E-07 3.1E-11 105.3 7.2 65 613-677 189-256 (773)
194 2vp4_A Deoxynucleoside kinase; 98.2 5.1E-08 1.8E-12 98.9 -3.9 64 479-546 14-87 (230)
195 2z43_A DNA repair and recombin 98.2 6.8E-07 2.3E-11 95.5 3.8 28 481-508 103-130 (324)
196 1uf9_A TT1252 protein; P-loop, 98.2 1.8E-08 6.2E-13 99.3 -7.9 82 485-578 8-93 (203)
197 2eyu_A Twitching motility prot 98.1 9.9E-07 3.4E-11 91.4 2.6 59 622-686 88-146 (261)
198 4a1f_A DNAB helicase, replicat 98.0 9.2E-06 3.1E-10 87.0 8.3 105 474-646 35-141 (338)
199 1knq_A Gluconate kinase; ALFA/ 98.0 1.3E-06 4.4E-11 84.1 0.8 53 483-541 6-59 (175)
200 1rz3_A Hypothetical protein rb 98.0 1.4E-06 4.9E-11 86.2 1.2 49 481-529 18-66 (201)
201 3kl4_A SRP54, signal recogniti 98.0 5.5E-06 1.9E-10 91.6 5.6 41 484-524 96-136 (433)
202 1v5w_A DMC1, meiotic recombina 97.8 4.2E-06 1.4E-10 90.1 2.3 28 481-508 118-145 (343)
203 1fnn_A CDC6P, cell division co 97.8 3.9E-05 1.3E-09 82.9 9.9 44 631-675 124-171 (389)
204 3r20_A Cytidylate kinase; stru 97.8 2.9E-06 9.8E-11 86.3 0.2 70 485-554 9-96 (233)
205 2pez_A Bifunctional 3'-phospho 97.8 1.9E-06 6.4E-11 83.4 -1.7 41 483-524 3-45 (179)
206 1f6b_A SAR1; gtpases, N-termin 97.7 5.2E-06 1.8E-10 81.6 1.0 57 465-522 6-70 (198)
207 3b9p_A CG5977-PA, isoform A; A 97.7 0.00016 5.4E-09 75.5 11.5 71 616-686 97-187 (297)
208 1sxj_C Activator 1 40 kDa subu 97.7 4.8E-06 1.6E-10 89.2 -0.9 44 471-514 30-75 (340)
209 3bh0_A DNAB-like replicative h 97.7 1.8E-05 6.2E-10 84.1 3.6 107 473-645 56-164 (315)
210 2qby_A CDC6 homolog 1, cell di 97.6 2E-05 6.8E-10 84.8 3.4 31 483-513 43-73 (386)
211 3lxx_A GTPase IMAP family memb 97.6 0.00022 7.5E-09 72.1 10.9 28 487-514 31-58 (239)
212 1mky_A Probable GTP-binding pr 97.6 3.6E-05 1.2E-09 85.6 4.6 71 486-556 181-264 (439)
213 1ypw_A Transitional endoplasmi 97.6 3.8E-05 1.3E-09 91.8 4.9 32 479-510 232-263 (806)
214 3llm_A ATP-dependent RNA helic 97.5 3E-05 1E-09 78.5 3.1 139 482-668 73-213 (235)
215 1ega_A Protein (GTP-binding pr 97.5 5.6E-05 1.9E-09 79.7 5.2 25 484-508 7-31 (301)
216 3m6a_A ATP-dependent protease 97.5 1.1E-05 3.6E-10 92.3 -0.6 79 462-542 87-165 (543)
217 1m7g_A Adenylylsulfate kinase; 97.5 9.8E-06 3.4E-10 80.6 -0.9 43 480-522 20-64 (211)
218 1kag_A SKI, shikimate kinase I 97.5 3.2E-05 1.1E-09 73.8 2.7 33 484-520 3-35 (173)
219 4eaq_A DTMP kinase, thymidylat 97.5 2.6E-05 9.1E-10 78.9 1.7 44 475-519 13-59 (229)
220 2qor_A Guanylate kinase; phosp 97.5 1.6E-05 5.4E-10 78.7 -0.3 69 481-552 8-87 (204)
221 1lv7_A FTSH; alpha/beta domain 97.5 0.0003 1E-08 71.9 9.2 44 475-522 37-80 (257)
222 2p67_A LAO/AO transport system 97.4 1.4E-05 4.8E-10 85.9 -1.2 54 472-525 43-96 (341)
223 2z4s_A Chromosomal replication 97.4 0.00013 4.4E-09 81.2 6.3 65 632-696 194-263 (440)
224 2jaq_A Deoxyguanosine kinase; 97.4 6.8E-06 2.3E-10 80.6 -4.3 70 487-556 2-87 (205)
225 1u94_A RECA protein, recombina 97.3 0.0006 2E-08 73.6 10.4 27 482-508 60-86 (356)
226 1m2o_B GTP-binding protein SAR 97.3 0.00011 3.6E-09 71.5 3.8 48 473-521 12-67 (190)
227 2www_A Methylmalonic aciduria 97.3 5.2E-05 1.8E-09 81.7 1.3 44 483-526 72-115 (349)
228 2gj8_A MNME, tRNA modification 97.3 0.00015 5.1E-09 69.3 4.0 27 483-509 2-28 (172)
229 1l8q_A Chromosomal replication 97.2 0.00028 9.7E-09 74.7 5.2 28 484-511 36-63 (324)
230 3cf0_A Transitional endoplasmi 97.1 0.00058 2E-08 71.7 7.2 31 479-509 43-73 (301)
231 1y63_A LMAJ004144AAA protein; 97.1 0.0002 6.9E-09 69.5 3.0 32 477-508 2-33 (184)
232 1njg_A DNA polymerase III subu 97.0 0.00017 5.8E-09 71.5 1.9 44 632-676 126-169 (250)
233 4dcu_A GTP-binding protein ENG 97.0 0.00065 2.2E-08 75.7 6.9 58 616-676 86-144 (456)
234 1j8m_F SRP54, signal recogniti 97.0 7.5E-05 2.6E-09 78.7 -1.0 48 478-526 92-139 (297)
235 3h4m_A Proteasome-activating n 97.0 0.00054 1.8E-08 70.9 5.5 28 482-509 48-75 (285)
236 2w58_A DNAI, primosome compone 97.0 0.00042 1.4E-08 67.8 4.1 26 486-511 55-80 (202)
237 4fcw_A Chaperone protein CLPB; 97.0 0.00083 2.8E-08 70.2 6.6 31 485-515 47-77 (311)
238 3bos_A Putative DNA replicatio 96.9 0.0005 1.7E-08 68.5 4.4 27 484-510 51-77 (242)
239 2qag_A Septin-2, protein NEDD5 96.9 9.9E-05 3.4E-09 79.9 -1.5 58 456-520 15-72 (361)
240 2yvu_A Probable adenylyl-sulfa 96.9 0.00028 9.7E-09 68.3 1.9 40 481-520 9-49 (186)
241 2q6t_A DNAB replication FORK h 96.9 0.00099 3.4E-08 74.0 6.5 36 474-509 189-224 (444)
242 2p5t_B PEZT; postsegregational 96.9 0.00022 7.5E-09 73.0 1.0 42 481-524 28-69 (253)
243 3t61_A Gluconokinase; PSI-biol 96.8 0.00025 8.7E-09 69.6 0.9 32 485-520 18-49 (202)
244 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00066 2.3E-08 63.8 3.7 32 478-510 17-49 (149)
245 2wji_A Ferrous iron transport 96.8 0.00095 3.2E-08 63.0 4.8 24 486-509 4-27 (165)
246 3uk6_A RUVB-like 2; hexameric 96.8 0.0011 3.8E-08 71.1 5.6 39 482-520 67-105 (368)
247 2ohf_A Protein OLA1, GTP-bindi 96.7 0.00063 2.2E-08 74.2 3.4 41 481-521 18-69 (396)
248 2i1q_A DNA repair and recombin 96.7 0.00048 1.6E-08 73.0 2.4 27 481-507 94-120 (322)
249 2wjg_A FEOB, ferrous iron tran 96.7 0.0007 2.4E-08 64.9 3.2 23 486-508 8-30 (188)
250 1lw7_A Transcriptional regulat 96.7 2E-05 6.8E-10 85.5 -8.9 85 615-701 259-355 (365)
251 3n70_A Transport activator; si 96.7 0.0059 2E-07 56.6 9.3 32 483-514 22-53 (145)
252 3lxw_A GTPase IMAP family memb 96.7 0.0016 5.4E-08 66.4 5.8 59 616-675 86-151 (247)
253 2v1u_A Cell division control p 96.7 0.00054 1.8E-08 73.6 2.3 28 483-510 42-69 (387)
254 1np6_A Molybdopterin-guanine d 96.7 0.00051 1.7E-08 66.4 1.9 38 485-522 6-46 (174)
255 2zej_A Dardarin, leucine-rich 96.6 0.00096 3.3E-08 64.2 3.3 26 487-512 4-29 (184)
256 2if2_A Dephospho-COA kinase; a 96.6 0.00095 3.3E-08 65.4 3.3 22 487-508 3-24 (204)
257 1xp8_A RECA protein, recombina 96.5 0.0056 1.9E-07 66.2 9.2 27 481-507 70-96 (366)
258 3ihw_A Centg3; RAS, centaurin, 96.5 0.002 7E-08 62.0 5.1 36 487-522 22-66 (184)
259 4ag6_A VIRB4 ATPase, type IV s 96.5 0.001 3.4E-08 72.5 3.2 55 464-519 11-69 (392)
260 1sxj_D Activator 1 41 kDa subu 96.5 0.00031 1E-08 74.8 -1.2 43 632-675 133-175 (353)
261 2ewv_A Twitching motility prot 96.5 0.001 3.5E-08 72.2 2.8 58 622-685 199-256 (372)
262 3cm0_A Adenylate kinase; ATP-b 96.5 0.0012 4.1E-08 63.5 2.9 27 483-509 2-28 (186)
263 1qhx_A CPT, protein (chloramph 96.4 0.0016 5.3E-08 62.2 3.6 27 484-510 2-28 (178)
264 2b8t_A Thymidine kinase; deoxy 96.4 0.0021 7.3E-08 64.6 4.5 51 632-686 89-150 (223)
265 1gtv_A TMK, thymidylate kinase 96.4 0.00043 1.5E-08 68.2 -0.7 89 487-594 2-97 (214)
266 3dm5_A SRP54, signal recogniti 96.4 0.0081 2.8E-07 66.4 9.2 35 484-518 99-133 (443)
267 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.0085 2.9E-07 60.7 8.8 27 483-509 37-63 (262)
268 2ga8_A Hypothetical 39.9 kDa p 96.3 0.00048 1.6E-08 73.9 -0.8 37 473-509 10-48 (359)
269 3kb2_A SPBC2 prophage-derived 96.3 0.0019 6.4E-08 61.0 3.2 24 486-509 2-25 (173)
270 2vhj_A Ntpase P4, P4; non- hyd 96.3 0.0039 1.3E-07 65.9 5.8 28 480-507 118-145 (331)
271 3t15_A Ribulose bisphosphate c 96.3 0.0019 6.5E-08 67.6 3.4 27 483-509 34-60 (293)
272 1kht_A Adenylate kinase; phosp 96.3 0.0021 7.3E-08 61.7 3.5 26 484-509 2-27 (192)
273 2v54_A DTMP kinase, thymidylat 96.2 0.0023 8E-08 62.3 3.6 26 484-509 3-28 (204)
274 3trf_A Shikimate kinase, SK; a 96.2 0.0023 7.9E-08 61.5 3.4 26 484-509 4-29 (185)
275 1fzq_A ADP-ribosylation factor 96.2 0.002 6.7E-08 61.8 2.9 30 485-514 16-49 (181)
276 2chg_A Replication factor C sm 96.2 0.0092 3.1E-07 58.0 7.8 42 632-674 102-143 (226)
277 3syl_A Protein CBBX; photosynt 96.2 0.03 1E-06 58.2 12.2 26 484-509 66-91 (309)
278 3d8b_A Fidgetin-like protein 1 96.2 0.0053 1.8E-07 66.0 6.4 27 483-509 115-141 (357)
279 1ypw_A Transitional endoplasmi 96.2 0.00071 2.4E-08 80.8 -0.6 33 478-510 504-536 (806)
280 1vht_A Dephospho-COA kinase; s 96.1 0.0029 9.9E-08 62.7 3.9 32 484-520 3-34 (218)
281 2dby_A GTP-binding protein; GD 96.1 0.0029 1E-07 68.4 4.0 59 487-576 3-61 (368)
282 1ko7_A HPR kinase/phosphatase; 96.1 0.0021 7E-08 67.9 2.7 34 473-507 133-166 (314)
283 4a82_A Cystic fibrosis transme 96.1 2.3 7.9E-05 48.4 28.5 12 474-485 341-352 (578)
284 2rhm_A Putative kinase; P-loop 96.1 0.0024 8.3E-08 61.5 2.9 27 483-509 3-29 (193)
285 3cmw_A Protein RECA, recombina 96.1 0.012 4.1E-07 74.7 9.6 34 482-515 729-762 (1706)
286 1gvn_B Zeta; postsegregational 96.1 0.0028 9.7E-08 66.1 3.5 36 483-520 31-66 (287)
287 1q3t_A Cytidylate kinase; nucl 96.1 0.0028 9.5E-08 63.9 3.3 28 481-508 12-39 (236)
288 3qks_A DNA double-strand break 96.1 0.0033 1.1E-07 62.1 3.7 28 478-506 17-44 (203)
289 3lw7_A Adenylate kinase relate 96.0 0.0029 9.9E-08 59.5 3.1 20 486-505 2-21 (179)
290 1jal_A YCHF protein; nucleotid 96.0 0.0048 1.6E-07 66.5 4.9 36 485-520 2-48 (363)
291 2c95_A Adenylate kinase 1; tra 95.9 0.0032 1.1E-07 60.8 3.0 27 483-509 7-33 (196)
292 2wwf_A Thymidilate kinase, put 95.9 0.0035 1.2E-07 61.5 3.2 27 483-509 8-34 (212)
293 2plr_A DTMP kinase, probable t 95.9 0.0038 1.3E-07 61.0 3.4 28 484-511 3-30 (213)
294 1ex7_A Guanylate kinase; subst 95.9 0.0029 1E-07 61.7 2.5 74 488-570 4-90 (186)
295 3iij_A Coilin-interacting nucl 95.9 0.0036 1.2E-07 60.0 3.1 27 483-509 9-35 (180)
296 3bgw_A DNAB-like replicative h 95.9 0.0048 1.6E-07 68.5 4.4 33 475-507 187-219 (444)
297 1nn5_A Similar to deoxythymidy 95.9 0.0038 1.3E-07 61.3 3.2 28 482-509 6-33 (215)
298 2qp9_X Vacuolar protein sortin 95.8 0.02 6.9E-07 61.4 8.8 28 482-509 81-108 (355)
299 1xwi_A SKD1 protein; VPS4B, AA 95.8 0.019 6.5E-07 60.8 8.4 28 482-509 42-69 (322)
300 1via_A Shikimate kinase; struc 95.7 0.004 1.4E-07 59.4 2.7 23 487-509 6-28 (175)
301 2bwj_A Adenylate kinase 5; pho 95.7 0.0038 1.3E-07 60.5 2.4 28 482-509 9-36 (199)
302 1ly1_A Polynucleotide kinase; 95.7 0.0051 1.7E-07 58.4 3.2 31 486-519 3-33 (181)
303 1tev_A UMP-CMP kinase; ploop, 95.7 0.0053 1.8E-07 59.0 3.3 26 484-509 2-27 (196)
304 2vli_A Antibiotic resistance p 95.6 0.0041 1.4E-07 59.5 2.3 27 483-509 3-29 (183)
305 2fn4_A P23, RAS-related protei 95.6 0.0087 3E-07 56.3 4.6 22 487-508 11-32 (181)
306 2ze6_A Isopentenyl transferase 95.6 0.005 1.7E-07 63.0 3.0 24 486-509 2-25 (253)
307 1xjc_A MOBB protein homolog; s 95.6 0.0032 1.1E-07 60.5 1.4 36 486-521 5-43 (169)
308 3qf4_A ABC transporter, ATP-bi 95.6 4.4 0.00015 46.2 32.6 14 458-471 356-369 (587)
309 2r62_A Cell division protease 95.6 0.003 1E-07 64.6 1.1 29 478-508 39-67 (268)
310 1aky_A Adenylate kinase; ATP:A 95.6 0.0065 2.2E-07 60.3 3.6 27 483-509 2-28 (220)
311 1nks_A Adenylate kinase; therm 95.5 0.0057 2E-07 58.7 2.9 24 487-510 3-26 (194)
312 2erx_A GTP-binding protein DI- 95.5 0.011 3.9E-07 54.9 4.9 21 487-507 5-25 (172)
313 2lkc_A Translation initiation 95.5 0.015 5.3E-07 54.6 5.9 25 483-507 6-30 (178)
314 3cbq_A GTP-binding protein REM 95.4 0.005 1.7E-07 59.8 2.1 22 487-508 25-46 (195)
315 2cdn_A Adenylate kinase; phosp 95.4 0.0081 2.8E-07 58.6 3.6 26 484-509 19-44 (201)
316 3fb4_A Adenylate kinase; psych 95.4 0.0074 2.5E-07 59.5 3.2 23 487-509 2-24 (216)
317 2z0h_A DTMP kinase, thymidylat 95.3 0.0077 2.6E-07 58.2 3.2 23 487-509 2-24 (197)
318 2qby_B CDC6 homolog 3, cell di 95.3 0.0065 2.2E-07 65.2 2.8 26 484-509 44-69 (384)
319 2iyv_A Shikimate kinase, SK; t 95.3 0.0072 2.5E-07 58.0 2.8 25 485-509 2-26 (184)
320 3qf4_B Uncharacterized ABC tra 95.3 5.4 0.00018 45.6 28.2 10 460-469 370-379 (598)
321 1zd8_A GTP:AMP phosphotransfer 95.3 0.0078 2.7E-07 60.0 3.2 27 483-509 5-31 (227)
322 1zuh_A Shikimate kinase; alpha 95.3 0.0087 3E-07 56.5 3.3 24 485-508 7-30 (168)
323 2ew1_A RAS-related protein RAB 95.3 0.013 4.6E-07 57.2 4.6 21 487-507 28-48 (201)
324 1e6c_A Shikimate kinase; phosp 95.3 0.008 2.7E-07 56.8 2.9 24 486-509 3-26 (173)
325 2pt5_A Shikimate kinase, SK; a 95.2 0.0091 3.1E-07 56.2 3.2 23 487-509 2-24 (168)
326 1z0j_A RAB-22, RAS-related pro 95.2 0.013 4.4E-07 54.5 4.2 23 487-509 8-30 (170)
327 3ake_A Cytidylate kinase; CMP 95.2 0.0083 2.8E-07 58.5 3.0 23 487-509 4-26 (208)
328 1ukz_A Uridylate kinase; trans 95.2 0.0089 3E-07 58.3 3.2 26 484-509 14-39 (203)
329 3dl0_A Adenylate kinase; phosp 95.2 0.0088 3E-07 59.0 3.2 23 487-509 2-24 (216)
330 1ksh_A ARF-like protein 2; sma 95.2 0.019 6.6E-07 54.6 5.4 25 483-507 16-40 (186)
331 1zak_A Adenylate kinase; ATP:A 95.2 0.008 2.7E-07 59.7 2.7 27 484-510 4-30 (222)
332 1z2a_A RAS-related protein RAB 95.2 0.0092 3.1E-07 55.4 3.0 22 487-508 7-28 (168)
333 2grj_A Dephospho-COA kinase; T 95.2 0.0095 3.2E-07 58.3 3.2 23 486-508 13-35 (192)
334 2pbr_A DTMP kinase, thymidylat 95.1 0.0097 3.3E-07 57.2 3.2 23 487-509 2-24 (195)
335 3tlx_A Adenylate kinase 2; str 95.1 0.01 3.4E-07 60.2 3.4 26 484-509 28-53 (243)
336 1r2q_A RAS-related protein RAB 95.1 0.014 4.9E-07 54.1 4.2 21 487-507 8-28 (170)
337 3q72_A GTP-binding protein RAD 95.1 0.0088 3E-07 55.6 2.7 23 487-509 4-26 (166)
338 1qf9_A UMP/CMP kinase, protein 95.1 0.0095 3.3E-07 57.1 3.0 25 485-509 6-30 (194)
339 3clv_A RAB5 protein, putative; 95.1 0.013 4.5E-07 56.0 4.0 23 486-508 8-30 (208)
340 2zan_A Vacuolar protein sortin 95.1 0.046 1.6E-06 60.5 8.8 28 482-509 164-191 (444)
341 2oil_A CATX-8, RAS-related pro 95.1 0.014 4.7E-07 56.1 4.0 21 487-507 27-47 (193)
342 1upt_A ARL1, ADP-ribosylation 95.1 0.022 7.6E-07 53.0 5.3 23 485-507 7-29 (171)
343 2nzj_A GTP-binding protein REM 95.1 0.011 3.9E-07 55.3 3.3 23 487-509 6-28 (175)
344 3zvl_A Bifunctional polynucleo 95.0 0.068 2.3E-06 58.6 9.9 35 482-520 255-289 (416)
345 1kao_A RAP2A; GTP-binding prot 95.0 0.011 3.7E-07 54.6 3.0 21 487-507 5-25 (167)
346 3q85_A GTP-binding protein REM 95.0 0.012 4E-07 54.9 3.2 23 487-509 4-26 (169)
347 2ged_A SR-beta, signal recogni 95.0 0.011 3.8E-07 56.6 3.0 26 484-509 47-72 (193)
348 2bcg_Y Protein YP2, GTP-bindin 95.0 0.018 6.2E-07 55.9 4.6 21 487-507 10-30 (206)
349 2dyk_A GTP-binding protein; GT 95.0 0.012 4E-07 54.3 3.0 23 487-509 3-25 (161)
350 1uj2_A Uridine-cytidine kinase 95.0 0.011 3.9E-07 60.0 3.2 24 486-509 23-46 (252)
351 1u8z_A RAS-related protein RAL 94.9 0.012 4E-07 54.5 3.0 21 487-507 6-26 (168)
352 1a7j_A Phosphoribulokinase; tr 94.9 0.006 2.1E-07 63.7 1.1 26 484-509 4-29 (290)
353 2ce2_X GTPase HRAS; signaling 94.9 0.011 3.7E-07 54.5 2.7 22 487-508 5-26 (166)
354 3t1o_A Gliding protein MGLA; G 94.9 0.013 4.3E-07 56.1 3.2 25 487-511 16-40 (198)
355 1c1y_A RAS-related protein RAP 94.9 0.012 4.2E-07 54.5 3.0 21 487-507 5-25 (167)
356 1z08_A RAS-related protein RAB 94.9 0.013 4.3E-07 54.6 3.1 22 487-508 8-29 (170)
357 3t5d_A Septin-7; GTP-binding p 94.9 0.011 3.7E-07 61.0 2.8 22 487-508 10-31 (274)
358 1m7b_A RND3/RHOE small GTP-bin 94.9 0.015 5E-07 55.5 3.5 22 487-508 9-30 (184)
359 1g16_A RAS-related protein SEC 94.9 0.012 4E-07 54.8 2.7 22 487-508 5-26 (170)
360 3k53_A Ferrous iron transport 94.8 0.012 4E-07 60.6 3.0 24 487-510 5-28 (271)
361 1ky3_A GTP-binding protein YPT 94.8 0.013 4.4E-07 55.2 3.0 22 487-508 10-31 (182)
362 1ek0_A Protein (GTP-binding pr 94.8 0.013 4.5E-07 54.4 3.0 22 487-508 5-26 (170)
363 3a8t_A Adenylate isopentenyltr 94.8 0.015 5.3E-07 61.8 3.8 27 483-509 38-64 (339)
364 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.013 4.6E-07 55.0 3.0 22 487-508 9-30 (177)
365 3tw8_B RAS-related protein RAB 94.8 0.014 4.7E-07 55.0 3.0 22 487-508 11-32 (181)
366 3a4m_A L-seryl-tRNA(SEC) kinas 94.8 0.015 5E-07 59.6 3.4 26 483-508 2-27 (260)
367 3iby_A Ferrous iron transport 94.8 0.013 4.3E-07 60.1 2.9 23 487-509 3-25 (256)
368 1svi_A GTP-binding protein YSX 94.7 0.013 4.3E-07 56.3 2.7 24 485-508 23-46 (195)
369 2f6r_A COA synthase, bifunctio 94.7 0.013 4.5E-07 60.8 3.0 23 485-507 75-97 (281)
370 3be4_A Adenylate kinase; malar 94.7 0.014 4.9E-07 57.8 3.0 26 484-509 4-29 (217)
371 3pqc_A Probable GTP-binding pr 94.7 0.014 4.7E-07 55.8 2.7 24 486-509 24-47 (195)
372 4dsu_A GTPase KRAS, isoform 2B 94.6 0.015 5.3E-07 55.1 3.0 21 487-507 6-26 (189)
373 2qmh_A HPR kinase/phosphorylas 94.6 0.021 7.3E-07 56.1 4.0 35 473-508 23-57 (205)
374 3pxi_A Negative regulator of g 94.6 0.052 1.8E-06 64.3 8.1 23 487-509 523-545 (758)
375 3t5g_A GTP-binding protein RHE 94.6 0.027 9.1E-07 53.2 4.6 29 487-515 8-41 (181)
376 3eie_A Vacuolar protein sortin 94.6 0.027 9.3E-07 59.4 5.1 26 483-508 49-74 (322)
377 3bc1_A RAS-related protein RAB 94.6 0.016 5.4E-07 55.1 3.0 21 487-507 13-33 (195)
378 4bas_A ADP-ribosylation factor 94.6 0.023 7.9E-07 54.5 4.1 29 486-514 18-52 (199)
379 3kkq_A RAS-related protein M-R 94.5 0.03 1E-06 52.9 4.9 21 487-507 20-40 (183)
380 2hxs_A RAB-26, RAS-related pro 94.5 0.018 6.3E-07 54.0 3.3 21 487-507 8-28 (178)
381 1r8s_A ADP-ribosylation factor 94.5 0.017 5.8E-07 53.5 3.0 21 487-507 2-22 (164)
382 2cxx_A Probable GTP-binding pr 94.5 0.016 5.3E-07 55.2 2.7 22 487-508 3-24 (190)
383 2fg5_A RAB-22B, RAS-related pr 94.5 0.024 8.1E-07 54.5 4.0 21 487-507 25-45 (192)
384 1jr3_A DNA polymerase III subu 94.5 0.058 2E-06 57.4 7.4 42 632-674 119-160 (373)
385 2g6b_A RAS-related protein RAB 94.5 0.018 6.1E-07 54.3 3.0 21 487-507 12-32 (180)
386 2gf0_A GTP-binding protein DI- 94.4 0.027 9.3E-07 54.0 4.3 22 486-507 9-30 (199)
387 2y8e_A RAB-protein 6, GH09086P 94.4 0.016 5.6E-07 54.3 2.7 21 487-507 16-36 (179)
388 3b1v_A Ferrous iron uptake tra 94.4 0.019 6.3E-07 59.4 3.3 24 486-509 4-27 (272)
389 1hqc_A RUVB; extended AAA-ATPa 94.4 0.094 3.2E-06 54.7 8.7 25 484-508 37-61 (324)
390 2efe_B Small GTP-binding prote 94.4 0.019 6.6E-07 54.1 3.1 22 487-508 14-35 (181)
391 1z0f_A RAB14, member RAS oncog 94.4 0.019 6.5E-07 53.8 3.0 22 487-508 17-38 (179)
392 1e4v_A Adenylate kinase; trans 94.4 0.018 6.1E-07 56.8 2.9 23 487-509 2-24 (214)
393 2h92_A Cytidylate kinase; ross 94.4 0.015 5.2E-07 57.3 2.4 25 485-509 3-27 (219)
394 2r8r_A Sensor protein; KDPD, P 94.4 0.02 6.7E-07 57.5 3.1 26 484-509 4-31 (228)
395 4b4t_L 26S protease subunit RP 94.3 0.064 2.2E-06 59.1 7.5 29 481-509 211-239 (437)
396 3con_A GTPase NRAS; structural 94.3 0.02 6.8E-07 54.7 3.0 22 487-508 23-44 (190)
397 2a9k_A RAS-related protein RAL 94.3 0.02 6.9E-07 54.1 3.0 21 487-507 20-40 (187)
398 4dhe_A Probable GTP-binding pr 94.3 0.014 4.8E-07 57.4 1.9 25 485-509 29-53 (223)
399 1gwn_A RHO-related GTP-binding 94.3 0.028 9.5E-07 55.1 4.0 22 487-508 30-51 (205)
400 2xtp_A GTPase IMAP family memb 94.2 0.02 6.8E-07 58.2 3.0 23 486-508 23-45 (260)
401 2xb4_A Adenylate kinase; ATP-b 94.2 0.022 7.5E-07 56.7 3.2 23 487-509 2-24 (223)
402 1zd9_A ADP-ribosylation factor 94.2 0.029 9.8E-07 53.7 4.0 21 487-507 24-44 (188)
403 1ak2_A Adenylate kinase isoenz 94.2 0.025 8.4E-07 56.7 3.6 26 484-509 15-40 (233)
404 3cmu_A Protein RECA, recombina 94.2 0.13 4.4E-06 66.3 10.8 28 482-509 380-407 (2050)
405 1wf3_A GTP-binding protein; GT 94.2 0.021 7.3E-07 59.8 3.2 22 487-508 9-30 (301)
406 3hu3_A Transitional endoplasmi 94.2 0.036 1.2E-06 62.2 5.2 28 482-509 235-262 (489)
407 1vg8_A RAS-related protein RAB 94.2 0.022 7.5E-07 55.1 3.0 22 487-508 10-31 (207)
408 2gf9_A RAS-related protein RAB 94.2 0.022 7.6E-07 54.4 3.0 22 487-508 24-45 (189)
409 2bme_A RAB4A, RAS-related prot 94.1 0.021 7.1E-07 54.2 2.7 22 487-508 12-33 (186)
410 2bov_A RAla, RAS-related prote 94.1 0.022 7.7E-07 54.9 3.0 21 487-507 16-36 (206)
411 3exa_A TRNA delta(2)-isopenten 94.1 0.026 9E-07 59.4 3.6 25 485-509 3-27 (322)
412 3auy_A DNA double-strand break 94.1 0.029 9.8E-07 60.6 4.1 30 476-506 17-46 (371)
413 1moz_A ARL1, ADP-ribosylation 94.1 0.015 5.3E-07 54.9 1.7 24 484-507 17-40 (183)
414 3reg_A RHO-like small GTPase; 94.1 0.036 1.2E-06 53.2 4.3 22 487-508 25-46 (194)
415 1z06_A RAS-related protein RAB 94.1 0.024 8.3E-07 54.1 3.0 21 487-507 22-42 (189)
416 3cmw_A Protein RECA, recombina 94.0 0.094 3.2E-06 66.7 9.0 26 482-507 380-405 (1706)
417 1zbd_A Rabphilin-3A; G protein 94.0 0.026 8.9E-07 54.5 3.2 22 487-508 10-31 (203)
418 3d3q_A TRNA delta(2)-isopenten 94.0 0.024 8.3E-07 60.4 3.2 25 486-510 8-32 (340)
419 2cjw_A GTP-binding protein GEM 94.0 0.025 8.5E-07 54.7 3.0 21 487-507 8-28 (192)
420 1nrj_B SR-beta, signal recogni 94.0 0.025 8.4E-07 55.5 3.0 24 486-509 13-36 (218)
421 3u61_B DNA polymerase accessor 94.0 0.039 1.3E-06 57.9 4.8 43 632-675 105-148 (324)
422 1mh1_A RAC1; GTP-binding, GTPa 94.0 0.026 8.8E-07 53.4 3.0 21 487-507 7-27 (186)
423 2il1_A RAB12; G-protein, GDP, 94.0 0.025 8.6E-07 54.4 3.0 21 487-507 28-48 (192)
424 3v9p_A DTMP kinase, thymidylat 94.0 0.022 7.6E-07 57.3 2.6 29 482-510 22-50 (227)
425 1p5z_B DCK, deoxycytidine kina 94.0 0.021 7.2E-07 58.3 2.5 29 482-510 21-49 (263)
426 4edh_A DTMP kinase, thymidylat 94.0 0.028 9.7E-07 55.8 3.4 28 483-510 4-31 (213)
427 2qu8_A Putative nucleolar GTP- 94.0 0.026 8.9E-07 56.0 3.1 23 486-508 30-52 (228)
428 3iev_A GTP-binding protein ERA 93.9 0.026 8.9E-07 59.3 3.2 22 487-508 12-33 (308)
429 3llu_A RAS-related GTP-binding 93.9 0.028 9.5E-07 54.3 3.2 25 487-511 22-46 (196)
430 3oes_A GTPase rhebl1; small GT 93.9 0.024 8.2E-07 54.9 2.7 23 486-508 25-47 (201)
431 1ojl_A Transcriptional regulat 93.9 0.075 2.6E-06 55.7 6.7 28 483-510 23-50 (304)
432 3tkl_A RAS-related protein RAB 93.9 0.034 1.2E-06 53.1 3.8 22 487-508 18-39 (196)
433 3bwd_D RAC-like GTP-binding pr 93.8 0.032 1.1E-06 52.6 3.3 24 484-507 7-30 (182)
434 2a5j_A RAS-related protein RAB 93.8 0.028 9.6E-07 53.9 3.0 22 487-508 23-44 (191)
435 3dz8_A RAS-related protein RAB 93.8 0.025 8.7E-07 54.2 2.7 22 487-508 25-46 (191)
436 4b4t_K 26S protease regulatory 93.8 0.069 2.4E-06 58.7 6.3 29 481-509 202-230 (428)
437 1jbk_A CLPB protein; beta barr 93.8 0.033 1.1E-06 52.6 3.3 27 483-509 41-67 (195)
438 2iwr_A Centaurin gamma 1; ANK 93.7 0.026 9E-07 53.1 2.6 22 486-507 8-29 (178)
439 3lv8_A DTMP kinase, thymidylat 93.7 0.031 1.1E-06 56.5 3.2 28 483-510 25-52 (236)
440 2o52_A RAS-related protein RAB 93.7 0.029 9.9E-07 54.4 2.9 21 487-507 27-47 (200)
441 1q57_A DNA primase/helicase; d 93.7 0.059 2E-06 60.6 5.8 27 481-507 238-264 (503)
442 2fv8_A H6, RHO-related GTP-bin 93.7 0.027 9.4E-07 54.8 2.8 23 486-508 26-48 (207)
443 3ld9_A DTMP kinase, thymidylat 93.7 0.033 1.1E-06 55.8 3.4 28 483-510 19-46 (223)
444 3tmk_A Thymidylate kinase; pho 93.7 0.028 9.5E-07 56.1 2.8 29 483-511 3-31 (216)
445 1zj6_A ADP-ribosylation factor 93.7 0.03 1E-06 53.4 2.9 23 485-507 16-38 (187)
446 1x3s_A RAS-related protein RAB 93.7 0.031 1E-06 53.3 3.0 22 487-508 17-38 (195)
447 3cph_A RAS-related protein SEC 93.7 0.03 1E-06 54.4 3.0 23 485-507 20-42 (213)
448 2atv_A RERG, RAS-like estrogen 93.7 0.031 1.1E-06 53.8 3.0 23 486-508 29-51 (196)
449 3i8s_A Ferrous iron transport 93.7 0.029 1E-06 57.8 3.0 23 487-509 5-27 (274)
450 2h57_A ADP-ribosylation factor 93.7 0.025 8.4E-07 54.2 2.2 23 486-508 22-44 (190)
451 2p5s_A RAS and EF-hand domain 93.6 0.032 1.1E-06 54.0 3.0 25 484-508 27-51 (199)
452 2h17_A ADP-ribosylation factor 93.6 0.027 9.3E-07 53.5 2.5 21 487-507 23-43 (181)
453 1ltq_A Polynucleotide kinase; 93.6 0.031 1.1E-06 58.0 3.2 31 486-519 3-33 (301)
454 1iqp_A RFCS; clamp loader, ext 93.6 0.058 2E-06 56.1 5.2 42 632-674 110-151 (327)
455 4tmk_A Protein (thymidylate ki 93.6 0.034 1.2E-06 55.3 3.3 27 484-510 2-28 (213)
456 3tqf_A HPR(Ser) kinase; transf 93.6 0.045 1.6E-06 52.5 3.9 34 473-507 5-38 (181)
457 2ocp_A DGK, deoxyguanosine kin 93.6 0.032 1.1E-06 56.0 3.1 27 484-510 1-27 (241)
458 2wsm_A Hydrogenase expression/ 93.6 0.03 1E-06 55.0 2.8 23 486-508 31-53 (221)
459 2f7s_A C25KG, RAS-related prot 93.6 0.036 1.2E-06 54.2 3.3 22 487-508 27-48 (217)
460 3def_A T7I23.11 protein; chlor 93.6 0.032 1.1E-06 57.0 3.0 22 487-508 38-59 (262)
461 1h65_A Chloroplast outer envel 93.6 0.031 1.1E-06 57.3 2.9 23 487-509 41-63 (270)
462 3a1s_A Iron(II) transport prot 93.5 0.035 1.2E-06 56.7 3.3 23 487-509 7-29 (258)
463 2j1l_A RHO-related GTP-binding 93.5 0.033 1.1E-06 54.6 3.0 21 487-507 36-56 (214)
464 1jwy_B Dynamin A GTPase domain 93.5 0.032 1.1E-06 58.3 3.0 23 487-509 26-48 (315)
465 2q3h_A RAS homolog gene family 93.5 0.037 1.3E-06 53.4 3.2 23 485-507 20-42 (201)
466 1sxj_B Activator 1 37 kDa subu 93.5 0.071 2.4E-06 55.4 5.6 42 632-674 107-148 (323)
467 3cnl_A YLQF, putative uncharac 93.5 0.037 1.3E-06 56.8 3.4 30 486-515 100-129 (262)
468 3c5c_A RAS-like protein 12; GD 93.5 0.036 1.2E-06 53.1 3.0 28 487-514 23-55 (187)
469 3crm_A TRNA delta(2)-isopenten 93.5 0.035 1.2E-06 58.8 3.2 25 486-510 6-30 (323)
470 2fu5_C RAS-related protein RAB 93.4 0.025 8.5E-07 53.6 1.8 21 487-507 10-30 (183)
471 4b4t_J 26S protease regulatory 93.4 0.08 2.7E-06 57.6 5.9 29 481-509 178-206 (405)
472 3cmu_A Protein RECA, recombina 93.4 0.16 5.5E-06 65.4 9.5 37 470-506 1064-1102(2050)
473 2gco_A H9, RHO-related GTP-bin 93.4 0.034 1.2E-06 53.9 2.7 21 487-507 27-47 (201)
474 4b4t_M 26S protease regulatory 93.3 0.094 3.2E-06 57.7 6.5 30 480-509 210-239 (434)
475 3l0o_A Transcription terminati 93.3 0.013 4.5E-07 63.3 -0.4 51 458-508 137-198 (427)
476 2aka_B Dynamin-1; fusion prote 93.3 0.033 1.1E-06 57.5 2.7 23 487-509 28-50 (299)
477 2fh5_B SR-beta, signal recogni 93.3 0.05 1.7E-06 53.1 3.9 23 486-508 8-30 (214)
478 4djt_A GTP-binding nuclear pro 93.3 0.024 8.1E-07 55.6 1.5 21 487-507 13-33 (218)
479 3q3j_B RHO-related GTP-binding 93.3 0.049 1.7E-06 53.5 3.8 23 486-508 28-50 (214)
480 1a5t_A Delta prime, HOLB; zinc 93.3 0.059 2E-06 57.1 4.6 42 632-674 108-149 (334)
481 3umf_A Adenylate kinase; rossm 93.3 0.043 1.5E-06 54.7 3.3 75 481-571 25-99 (217)
482 3foz_A TRNA delta(2)-isopenten 93.2 0.044 1.5E-06 57.6 3.4 25 485-509 10-34 (316)
483 2b6h_A ADP-ribosylation factor 93.2 0.036 1.2E-06 53.4 2.7 25 483-507 27-51 (192)
484 1sky_E F1-ATPase, F1-ATP synth 93.2 0.038 1.3E-06 61.3 3.1 41 474-515 141-181 (473)
485 2g3y_A GTP-binding protein GEM 93.2 0.045 1.5E-06 54.2 3.3 22 487-508 39-60 (211)
486 3r7w_A Gtpase1, GTP-binding pr 93.2 0.046 1.6E-06 57.3 3.6 26 484-509 2-27 (307)
487 2p65_A Hypothetical protein PF 93.1 0.042 1.4E-06 51.8 2.8 28 483-510 41-68 (187)
488 2atx_A Small GTP binding prote 93.1 0.041 1.4E-06 52.7 2.8 22 487-508 20-41 (194)
489 4gzl_A RAS-related C3 botulinu 93.0 0.038 1.3E-06 53.8 2.5 24 484-507 29-52 (204)
490 3eph_A TRNA isopentenyltransfe 92.9 0.046 1.6E-06 59.5 3.1 25 485-509 2-26 (409)
491 2hf9_A Probable hydrogenase ni 92.9 0.044 1.5E-06 54.0 2.7 23 486-508 39-61 (226)
492 2x77_A ADP-ribosylation factor 92.8 0.034 1.2E-06 53.0 1.7 24 484-507 21-44 (189)
493 2zts_A Putative uncharacterize 92.7 0.069 2.3E-06 53.2 3.9 24 482-505 27-50 (251)
494 2hup_A RAS-related protein RAB 92.7 0.05 1.7E-06 52.8 2.8 21 487-507 31-51 (201)
495 3cpj_B GTP-binding protein YPT 92.6 0.057 1.9E-06 53.3 3.1 21 487-507 15-35 (223)
496 2yc2_C IFT27, small RAB-relate 92.6 0.028 9.5E-07 54.3 0.8 22 487-508 22-43 (208)
497 1qvr_A CLPB protein; coiled co 92.3 0.089 3E-06 63.2 4.8 35 486-520 589-624 (854)
498 3ec1_A YQEH GTPase; atnos1, at 92.3 0.06 2E-06 58.1 2.9 25 484-508 161-185 (369)
499 1puj_A YLQF, conserved hypothe 92.2 0.081 2.8E-06 54.9 3.7 30 485-514 120-149 (282)
500 2j0v_A RAC-like GTP-binding pr 92.1 0.064 2.2E-06 52.2 2.7 22 486-507 10-31 (212)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.1e-101 Score=967.31 Aligned_cols=503 Identities=28% Similarity=0.389 Sum_probs=456.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSG 272 (728)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 272 (728)
.++.+++.+++.++++++..++|.++|+|++++|++||+++++|++.+++++|.+.++..+...+..++..++.++.. +
T Consensus 150 ~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~-~ 228 (1321)
T 4f4c_A 150 WAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITG-F 228 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 467788999999999999999999999999999999999999999999999999988877665555566555444333 3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHH
Q 004826 273 ILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRY 352 (728)
Q Consensus 273 il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~ 352 (728)
++++.++|.+++++++++++++++...+.+..++..++.++..++.++.+.|.++|+++||+|++|+.+.++|.+..+++
T Consensus 229 i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~ 308 (1321)
T 4f4c_A 229 IVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEA 308 (1321)
T ss_dssp HHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHH
Confidence 44566788888888888888777777777777777777788888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 353 EDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKS 432 (728)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~r 432 (728)
.+...+.....+.......++..+..++++++|++++.+|.+|+|++++++.++..+..|+..++..+..++++.++++|
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~r 388 (1321)
T 4f4c_A 309 KKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASG 388 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888777777766666666677777888999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccccccCCCCC-CCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 433 MFQLLEEKADIQDRDNA-MPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 433 l~~ll~~~~~~~~~~~~-~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++++++.+++.++.... .+.....|+|+|+||+|+||+ ++|+|+||||+|+|||++|||||||||||||++||+|+|
T Consensus 389 i~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 389 IYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp HHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred HHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 99999988765443222 122233578999999999984 569999999999999999999999999999999999999
Q ss_pred CCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchh
Q 004826 510 DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589 (728)
Q Consensus 510 ~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~v 589 (728)
+|++|+|++||+|++++++++||++||||||||+||++||||||+||+|++++|++++||+.|++|+||++||+||||+|
T Consensus 469 ~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~v 548 (1321)
T 4f4c_A 469 DVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLV 548 (1321)
T ss_dssp CCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEE
T ss_pred ccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEe
Q 004826 590 GERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFI 669 (728)
Q Consensus 590 gE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvI 669 (728)
||+|.+ ||||||||||||||+++||+||||||||||||++||+.|+++|+++.++||+|+|
T Consensus 549 Ge~G~~-------------------LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iii 609 (1321)
T 4f4c_A 549 GDRGTQ-------------------LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIII 609 (1321)
T ss_dssp SSSSCC-------------------CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEE
T ss_pred cCCCCC-------------------CCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhc
Q 004826 670 AHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 715 (728)
Q Consensus 670 aHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 715 (728)
|||++|+++||+|+|||+|+|+|+|||+||++++|.|++||..|..
T Consensus 610 aHrls~i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~~ 655 (1321)
T 4f4c_A 610 AHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQTF 655 (1321)
T ss_dssp CSCTTTTTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHHH
T ss_pred cccHHHHHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999998843
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-99 Score=947.80 Aligned_cols=504 Identities=30% Similarity=0.375 Sum_probs=414.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 193 SAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLS--RETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMV 270 (728)
Q Consensus 193 ~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~--~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 270 (728)
.++.+++.+++..++.++..++|.++|+|++++|++||+. +++|++.+|+++|.+.++..+...+..++..++.++..
T Consensus 808 ~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ 887 (1321)
T 4f4c_A 808 GICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAG 887 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4567788899999999999999999999999999999986 67999999999999988877666556666555544333
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHH
Q 004826 271 SGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLR 350 (728)
Q Consensus 271 ~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~ 350 (728)
+ ++++.++|.++++++++++++++......+.......+..+..++....+.|++.|+++||+|++|+.+.++|.+..+
T Consensus 888 ~-~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~ 966 (1321)
T 4f4c_A 888 I-GLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLD 966 (1321)
T ss_dssp H-HHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHH
T ss_pred e-eeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHH
Confidence 2 334446777777666555554444333222212222223344556677789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 351 RYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDL--VMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (728)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l--~a~~~~~~~l~~pl~~l~~~~~~~~~a~~ 428 (728)
...+...+.....+....+...+..+..+.++++|++++..|..+++.+ ++++.++.....|+..+...+.+++++..
T Consensus 967 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 1046 (1321)
T 4f4c_A 967 IPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATF 1046 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877777666665555544555555666677888888887776654 33444444455688888899999999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh
Q 004826 429 DMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (728)
Q Consensus 429 s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~ 506 (728)
+++|++++++.+++.++...+.+.++..|+|+|+||+|+||+ +.|||+||||+|+|||+||||||||||||||+++|+
T Consensus 1047 a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~ 1126 (1321)
T 4f4c_A 1047 AGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLE 1126 (1321)
T ss_dssp HHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHT
T ss_pred HHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 999999999988776544333344455689999999999984 458999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCC--CCCCHHHHHHHHHHhccHHHHHhCCCc
Q 004826 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR--LSATEEEVYDAARRAAIHDTIMNFPAK 584 (728)
Q Consensus 507 gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~--~~~sdeei~~A~~~a~l~~~I~~LP~G 584 (728)
|||+|++|+|+|||+|++++++++||++|++|||||+||+|||||||+||. ++++|||+++||+.|++||||++||+|
T Consensus 1127 rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~G 1206 (1321)
T 4f4c_A 1127 RFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEG 1206 (1321)
T ss_dssp TSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTT
T ss_pred cCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCC
Confidence 999999999999999999999999999999999999999999999999994 578999999999999999999999999
Q ss_pred ccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCC
Q 004826 585 YSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR 664 (728)
Q Consensus 585 ~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~ 664 (728)
|||+|||+|.+ |||||||||||||||+|||+||||||||||||++||+.|+++|++..++|
T Consensus 1207 ldT~vge~G~~-------------------LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~ 1267 (1321)
T 4f4c_A 1207 FETRVGDRGTQ-------------------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGR 1267 (1321)
T ss_dssp TCSEETTTSCS-------------------SCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSS
T ss_pred CCCEecCCCcc-------------------cCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999988 99999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 665 TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 665 TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
|+|+|||||+|+++||+|+|||+|+|||+|||+||++++|.|++||+.|..+
T Consensus 1268 TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~~g~y~~L~~~Q~~e 1319 (1321)
T 4f4c_A 1268 TCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMTE 1319 (1321)
T ss_dssp EEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHCC-------------
T ss_pred EEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999654
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.6e-96 Score=848.85 Aligned_cols=569 Identities=26% Similarity=0.408 Sum_probs=484.1
Q ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 004826 109 RTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIA 188 (728)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 188 (728)
+++++|++ ++++.+++++++.++..++.++.|++++.++|.+..... . ..+... ..++++..
T Consensus 12 ~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~------~~~~~~----~~~~~~~~-- 73 (587)
T 3qf4_A 12 KTLARYLK-----PYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-F------SLVLKT----GILMLIVA-- 73 (587)
T ss_dssp CCGGGGTG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC-H------HHHHHH----HHHHHHHH--
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-H------HHHHHH----HHHHHHHH--
Confidence 34555665 457777788888888889999999999999998643211 0 011110 11111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 189 RTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEIS 268 (728)
Q Consensus 189 ~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 268 (728)
++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++.++...+..++..++.++
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 152 (587)
T 3qf4_A 74 -LIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFV 152 (587)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224566778888899999999999999999999999999999999999999999999888877665555554443332
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHH
Q 004826 269 MVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEF 348 (728)
Q Consensus 269 ~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~ 348 (728)
. +.++++.++|.+++++++.+++++++..++.+...+..++.++..++.++.+.|.++|+++||+|++|+.+.++|++.
T Consensus 153 ~-~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~ 231 (587)
T 3qf4_A 153 G-GIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKA 231 (587)
T ss_dssp H-HHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHH
Confidence 2 223445567877777777777766666666666666677777788888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 349 LRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLV 428 (728)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~ 428 (728)
.+++.+...+..+..+....+..++..+..++++++|++++.+|.+|+|+++++..|+..+..|+..++..+..++++.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 311 (587)
T 3qf4_A 232 NESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASA 311 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887777766666665566666667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 429 DMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 429 s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
+++|+.++++.+++.++.....+.+...+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|
T Consensus 312 s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 312 SAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp HHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 999999999887654432222222234568999999999974 5689999999999999999999999999999999999
Q ss_pred CCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccc
Q 004826 508 SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST 587 (728)
Q Consensus 508 ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT 587 (728)
+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|+++.++++++++++.++++++++++|+||||
T Consensus 392 ~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~ 471 (587)
T 3qf4_A 392 LIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS 471 (587)
T ss_dssp SSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhh
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred hhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEE
Q 004826 588 VVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSI 667 (728)
Q Consensus 588 ~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvI 667 (728)
.+||+|.+ ||||||||++|||||++||+|||||||||+||+++|+.|++.|+++.+++|+|
T Consensus 472 ~~~~~~~~-------------------LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi 532 (587)
T 3qf4_A 472 RVERGGRN-------------------FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTF 532 (587)
T ss_dssp EECSSSCS-------------------SCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEE
T ss_pred HhcCCCCC-------------------cCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEE
Confidence 99999988 99999999999999999999999999999999999999999999998999999
Q ss_pred EeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 668 FIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 668 vIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
+||||+++++.||+|+||++|+|+|+|+|+||++++|.|+++|..|...
T Consensus 533 ~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~~~~~~~~~~~~~~~ 581 (587)
T 3qf4_A 533 IITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFGN 581 (587)
T ss_dssp EEESCHHHHTTSSEEEEEETTEEEEEECHHHHHHHCHHHHHHHHHHC--
T ss_pred EEecChHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999988644
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=5.5e-96 Score=848.88 Aligned_cols=575 Identities=31% Similarity=0.462 Sum_probs=488.8
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 004826 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGI 187 (728)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 187 (728)
++++++|++ ++++.+++++++.++..++.++.|++++.++|.+........ . ..+.......+++++++.
T Consensus 2 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~- 71 (578)
T 4a82_A 2 IKRYLQFVK-----PYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTT-D---EKVHHLTIAIGIALFIFV- 71 (578)
T ss_dssp HHHHHHHHG-----GGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCH-H---HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh-h---HHHHHHHHHHHHHHHHHH-
Confidence 567778876 567777788888888888899999999999998754221000 0 001000011111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 004826 188 ARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTILEI 267 (728)
Q Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 267 (728)
++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++.++...+..++..++.+
T Consensus 72 --~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~ 149 (578)
T 4a82_A 72 --IVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITI 149 (578)
T ss_dssp --HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233567788899999999999999999999999999999999999999999999998888777655444444444433
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHH
Q 004826 268 SMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDE 347 (728)
Q Consensus 268 ~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~ 347 (728)
++. .++++.++|.++++.++.+++++++...+.+...+..++..+..++..+.+.|.++|+++||+|++|+.+.++|++
T Consensus 150 i~~-~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 228 (578)
T 4a82_A 150 IIA-LSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228 (578)
T ss_dssp HHH-HHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHH
Confidence 322 2344556788888777777766666666666666666777777888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 348 FLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSL 427 (728)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~ 427 (728)
..+++.+...+..++.+.......++..+..++++++|++++..|.+|+|+++++..++..+..|+..++..+..++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~ 308 (578)
T 4a82_A 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSF 308 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888877777766666666666777889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh
Q 004826 428 VDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (728)
Q Consensus 428 ~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~ 506 (728)
.+++|++++++.+++..+.....+.+...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 309 ~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~ 388 (578)
T 4a82_A 309 ASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 388 (578)
T ss_dssp HHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTT
T ss_pred HHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHh
Confidence 9999999999987764432222222334568999999999985 568999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCccc
Q 004826 507 RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYS 586 (728)
Q Consensus 507 gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~d 586 (728)
|+|+|++|+|++||+|+++++.+++|++||||||||++|++||+|||.+|+|+.++++++++++.++++++++++|+|||
T Consensus 389 g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~ 468 (578)
T 4a82_A 389 RFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYD 468 (578)
T ss_dssp TSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred cCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhh
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred chhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeE
Q 004826 587 TVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTS 666 (728)
Q Consensus 587 T~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~Tv 666 (728)
|.+||+|.+ ||||||||++|||||++||+|||||||||+||+++|+.|++.++++.+++|+
T Consensus 469 t~~~~~g~~-------------------LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~ 529 (578)
T 4a82_A 469 TEVGERGVK-------------------LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTT 529 (578)
T ss_dssp CBCCGGGTT-------------------SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEE
T ss_pred hhhccCCCc-------------------CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999988 9999999999999999999999999999999999999999999999899999
Q ss_pred EEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 667 IFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 667 IvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|+++|+.|.
T Consensus 530 i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 530 LIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp EEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHTTSHHHHHHTTTT
T ss_pred EEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998774
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-96 Score=851.66 Aligned_cols=572 Identities=28% Similarity=0.429 Sum_probs=491.2
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 004826 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (728)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (728)
++.++++++|++ ++++.+++++++.++..++.+..|++++.++|.+...... ..+.... .++++
T Consensus 22 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-------~~~~~~~----~~~~~ 85 (598)
T 3qf4_B 22 TATLRRLLGYLR-----PHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF-------DLLPRYM----LILGT 85 (598)
T ss_dssp HHHHHHHGGGTG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG-------GGHHHHH----HHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH-------HHHHHHH----HHHHH
Confidence 456777877776 4577777788888888899999999999999987532111 0111111 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004826 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (728)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (728)
+. ++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+..++..+
T Consensus 86 ~~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 162 (598)
T 3qf4_B 86 IY---ALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGI 162 (598)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 233467788889999999999999999999999999999999999999999999999988887766555565555
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 004826 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (728)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~ 344 (728)
+.+++.+ ++++.++|.+++++++.+++++++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 163 ~~~i~~~-~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 241 (598)
T 3qf4_B 163 VTLAGAV-IMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEK 241 (598)
T ss_dssp HHHHHHH-HHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHH
Confidence 4443333 344556788877777777766666666666666666777777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (728)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~ 424 (728)
|++..+++.+...+..+..+....+..++..+..++++++|++++..|.+|+|+++++..++..+..|+..++..+..++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~ 321 (598)
T 3qf4_B 242 FDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQ 321 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777776666666666666666777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHH
Q 004826 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL 504 (728)
Q Consensus 425 ~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~L 504 (728)
++..+++|+.++++.+++.++.. ..+.+...+.|+|+||+|+|++++++|+|+||+|++||++|||||||||||||+++
T Consensus 322 ~~~~s~~ri~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~ 400 (598)
T 3qf4_B 322 MALASAERIFEILDLEEEKDDPD-AVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNL 400 (598)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCSS-CCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCCCCC-CCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHH
Confidence 99999999999998876543222 12222335689999999999877789999999999999999999999999999999
Q ss_pred HhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCc
Q 004826 505 LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK 584 (728)
Q Consensus 505 L~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G 584 (728)
|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|+++.++++++++++.++++++++++|+|
T Consensus 401 l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 480 (598)
T 3qf4_B 401 LMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEG 480 (598)
T ss_dssp HTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTG
T ss_pred HhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999999999
Q ss_pred ccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCC
Q 004826 585 YSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR 664 (728)
Q Consensus 585 ~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~ 664 (728)
|||.+||+|.+ |||||||||+|||||++||+|||||||||+||+++|+.|++.|+++.+++
T Consensus 481 ~~t~~~~~g~~-------------------LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~ 541 (598)
T 3qf4_B 481 YETVLTDNGED-------------------LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGK 541 (598)
T ss_dssp GGCBCHHHHTT-------------------SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTS
T ss_pred ccchhcCCCCC-------------------CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCC
Confidence 99999999988 99999999999999999999999999999999999999999999998999
Q ss_pred eEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 665 TSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 665 TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
|+|+||||+++++.||+|+||++|+|+|+|+|+||++++|.|+++|..|...
T Consensus 542 t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 593 (598)
T 3qf4_B 542 TSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELFTSQYGL 593 (598)
T ss_dssp EEEEESCCTTHHHHCSEEEEECSSSEEECSCHHHHHHTTCHHHHHHHHHHGG
T ss_pred EEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999988643
No 6
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=3.4e-93 Score=826.42 Aligned_cols=569 Identities=30% Similarity=0.413 Sum_probs=485.4
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 004826 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (728)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (728)
++.+++++++++ ++++.+++++++.++..++.++.|++++.++|.+.... .. .... + .+..+++
T Consensus 10 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~------~~~~---~-~~~~~~~ 73 (582)
T 3b5x_A 10 WQTFKRLWTYIR-----LYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNA-ES------NFLR---I-LPFMILG 73 (582)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-ch------HHHH---H-HHHHHHH
Confidence 455777777775 44666667777777788889999999999999875311 10 0010 0 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004826 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (728)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (728)
+. ++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++.++...+..++..+
T Consensus 74 ~~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b5x_A 74 LM---FVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREG 150 (582)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 223456778888999999999999999999999999999999999999999999999888887666556666555
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 004826 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (728)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~ 344 (728)
+.+++.+ ++++.++|.+++++++.+++++++...+.+...+..++.++..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 151 ~~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b5x_A 151 ASIIGLL-TLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKR 229 (582)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHH
Confidence 5444333 334446787777777666666666555666666666667777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (728)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~ 424 (728)
|++..+++.+...+..+..........++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b5x_A 230 FDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ 309 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888877777777666666666777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHH
Q 004826 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (728)
Q Consensus 425 ~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~ 503 (728)
++..+++|+.++++.+++.++. ..+.+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 310 RGMAACQTLFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred HHHHHHHHHHHHHcCCCcCCCC--CCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999877653221 11122224679999999999853 78999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCC-CCCCHHHHHHHHHHhccHHHHHhCC
Q 004826 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFP 582 (728)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~-~~~sdeei~~A~~~a~l~~~I~~LP 582 (728)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|++||+|||.+|. ++.++++++++++.++++++++++|
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 467 (582)
T 3b5x_A 388 LFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMP 467 (582)
T ss_pred HHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCc
Confidence 999999999999999999999999999999999999999999999999999997 7788999999999999999999999
Q ss_pred CcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC
Q 004826 583 AKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN 662 (728)
Q Consensus 583 ~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~ 662 (728)
+||||.+||+|.+ ||||||||++|||||++||+|||||||||+||+++|+.|++.|+++.+
T Consensus 468 ~g~~t~~~~~~~~-------------------LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b5x_A 468 QGLDTVIGENGTS-------------------LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_pred ccccchhcCCCCc-------------------CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC
Confidence 9999999999988 999999999999999999999999999999999999999999999888
Q ss_pred CCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 663 NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 663 ~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++++.|+++|+.|.
T Consensus 529 ~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b5x_A 529 NKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQF 580 (582)
T ss_pred CCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCcHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999884
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=3e-93 Score=826.92 Aligned_cols=569 Identities=30% Similarity=0.411 Sum_probs=485.4
Q ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHH
Q 004826 105 MKIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIG 184 (728)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (728)
++.+++++++++ ++++.+++++++.++..++.++.|++++.++|.+.... . .... .. .+..+++
T Consensus 10 ~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~-------~~~~--~~-~~~~~~~ 73 (582)
T 3b60_A 10 WQTFRRLWPTIA-----PFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKT-D-------RSVL--LW-MPLVVIG 73 (582)
T ss_dssp CHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTST-T-------HHHH--HH-SHHHHHH
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-c-------hHHH--HH-HHHHHHH
Confidence 355677778776 44666677777777788889999999999999764211 1 0000 00 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 004826 185 YGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTI 264 (728)
Q Consensus 185 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~ 264 (728)
+. ++..++.+++.++..+++.++..++|.++|+|++++|+.||+++++|++.+++++|.+.++..+...+..++..+
T Consensus 74 ~~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~ 150 (582)
T 3b60_A 74 LM---ILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREG 150 (582)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 223456778888999999999999999999999999999999999999999999999888887666666666655
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHH
Q 004826 265 LEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQ 344 (728)
Q Consensus 265 ~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~ 344 (728)
+.+++.++ +++.++|.+++++++.+++++++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++
T Consensus 151 ~~~i~~~~-~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 229 (582)
T 3b60_A 151 ASIIGLFI-MMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKR 229 (582)
T ss_dssp HHHHHHHH-HHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHH
Confidence 54443333 34456788887777776666666665666666666777777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 345 YDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETV 424 (728)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~ 424 (728)
|++..+++.+...+..+...+......++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~ 309 (582)
T 3b60_A 230 FDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888877777776666666666677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCC-ceeeeeeeEEEeCCcEEEEECCCCccHHHHHH
Q 004826 425 QSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTE-RKILDGVSFVVPAGKSVAIVGTSGSGKSTILR 503 (728)
Q Consensus 425 ~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~-~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~ 503 (728)
++..+++|+.++++.+++.++. ..+.+...+.|+++||+|+|+++ +++|+|+||+|++||++|||||||||||||++
T Consensus 310 ~~~~a~~ri~~~l~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 310 RGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp HHHHHHHHHHHHHHSCCSCCCC--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccCC--CCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 9999999999999887653321 11222234679999999999853 78999999999999999999999999999999
Q ss_pred HHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCC-CCCCHHHHHHHHHHhccHHHHHhCC
Q 004826 504 LLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFP 582 (728)
Q Consensus 504 LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~-~~~sdeei~~A~~~a~l~~~I~~LP 582 (728)
+|+|+|+|++|+|++||+|+++++.+++|++|+||||||.+|++||+|||.+|. ++.++++++++++.++++++++++|
T Consensus 388 ~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p 467 (582)
T 3b60_A 388 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMD 467 (582)
T ss_dssp HHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHST
T ss_pred HHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999997 7789999999999999999999999
Q ss_pred CcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC
Q 004826 583 AKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN 662 (728)
Q Consensus 583 ~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~ 662 (728)
+||||.+||+|.+ ||||||||++|||||++||+|||||||||+||+++|+.|++.|+++.+
T Consensus 468 ~g~~~~~~~~~~~-------------------LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 528 (582)
T 3b60_A 468 NGLDTIIGENGVL-------------------LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK 528 (582)
T ss_dssp TGGGSBCCTTSCS-------------------SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT
T ss_pred ccccccccCCCCC-------------------CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC
Confidence 9999999999988 999999999999999999999999999999999999999999999888
Q ss_pred CCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhh
Q 004826 663 NRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 663 ~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~ 714 (728)
++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++++.|+++|+.|.
T Consensus 529 ~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~q~ 580 (582)
T 3b60_A 529 NRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQF 580 (582)
T ss_dssp TSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHHTSSHHHHHHHTC
T ss_pred CCEEEEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHcCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999884
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.2e-92 Score=823.82 Aligned_cols=575 Identities=29% Similarity=0.401 Sum_probs=467.1
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHH
Q 004826 106 KIFRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGY 185 (728)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (728)
+.+++++++++ ++++.+++++++.++..++.++.|++++.++|.+........ . ..+..+ ..+++++
T Consensus 5 ~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~--~--~~~~~~----~~~~~~~ 71 (595)
T 2yl4_A 5 PEARKLLGLAY-----PERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDY--S--DNLTRL----CLGLSAV 71 (595)
T ss_dssp HHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCC--H--HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh--h--HHHHHH----HHHHHHH
Confidence 44667777775 456666777777777788888999999999998753211000 0 011110 0111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 004826 186 GIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVFNVVPTIL 265 (728)
Q Consensus 186 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~ 265 (728)
. ++..++.+++.++..+++.++..++|.++|+|++++|++||+++++|++.+++++|.+.++..+...+..++..++
T Consensus 72 ~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~ 148 (595)
T 2yl4_A 72 F---LCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGA 148 (595)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1224567788888999999999999999999999999999999999999999999988888766555555555554
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHH
Q 004826 266 EISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQY 345 (728)
Q Consensus 266 ~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~ 345 (728)
.+++.+ ++++.++|.+++++++.+++++++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|
T Consensus 149 ~~i~~~-~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~ 227 (595)
T 2yl4_A 149 QASVGI-SMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKY 227 (595)
T ss_dssp HHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHH
Confidence 443333 3344567888777777666666666666666666677777777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 346 DEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQ 425 (728)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~ 425 (728)
++..+++.+...+..+..........++..+..++++++|++++.+|.+|+|+++++..++..+..|+..++..+..+++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~ 307 (595)
T 2yl4_A 228 ASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMK 307 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777777666666555556666777899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccccCCCCCCCCCCCCce-EEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHH
Q 004826 426 SLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGS-IQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL 502 (728)
Q Consensus 426 a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~-I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~ 502 (728)
+..+++|++++++.+++.++.....+.+...+. |+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+
T Consensus 308 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl 387 (595)
T 2yl4_A 308 GLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVL 387 (595)
T ss_dssp HHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHH
T ss_pred HHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHH
Confidence 999999999999877654322111111122467 999999999975 35899999999999999999999999999999
Q ss_pred HHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCC---CCHHHHHHHHHHhccHHHHH
Q 004826 503 RLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS---ATEEEVYDAARRAAIHDTIM 579 (728)
Q Consensus 503 ~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~---~sdeei~~A~~~a~l~~~I~ 579 (728)
++|+|+|+|++|+|++||+|+++++.+++|++|+||||+|.+|++||+|||.+|.+. .++++++++++.++++++++
T Consensus 388 ~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (595)
T 2yl4_A 388 SLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIR 467 (595)
T ss_dssp HHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 78999999999999999999
Q ss_pred hCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHH
Q 004826 580 NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS 659 (728)
Q Consensus 580 ~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 659 (728)
++|+||||.+||+|.+ ||||||||++|||||++||+|||||||||+||+++|+.|++.|++
T Consensus 468 ~l~~g~~~~~~~~~~~-------------------LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~ 528 (595)
T 2yl4_A 468 NFPQGFNTVVGEKGVL-------------------LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDR 528 (595)
T ss_dssp TSSSGGGCBCSSSSCC-------------------CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHH
T ss_pred hCcccccccccCCCCc-------------------CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence 9999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhh-ccchHHHHHHhhhcc
Q 004826 660 LANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT-KAGRYAQLWGQQNNT 716 (728)
Q Consensus 660 l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~-~~g~Y~~l~~~q~~~ 716 (728)
+.+++|+|+||||+++++.||+|+||++|+|+|.|+|+||++ .++.|++++..|...
T Consensus 529 ~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~q~~~ 586 (595)
T 2yl4_A 529 LMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 586 (595)
T ss_dssp HHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C------------
T ss_pred HhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHHHhhcc
Confidence 888999999999999999999999999999999999999998 489999999988544
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=3.5e-91 Score=870.49 Aligned_cols=581 Identities=27% Similarity=0.368 Sum_probs=484.8
Q ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhh------hhh---hhhHHHHHHHHH
Q 004826 108 FRTLASYLWMKDNFEFRLRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTAT------ALA---ANSTFLALFGTP 178 (728)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~------~~~---~~~~~~~l~~~~ 178 (728)
++++++|.. +..+..+++++++.++..+...+.|++++.++|.+........ ... .......-+...
T Consensus 35 ~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 35 VLTMFRYAG----WLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp THHHHTCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 556666653 3445666666666667777778888999999997642110000 000 000000000001
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccChhHHHHHHHhhHHHHHHHHHHHHH
Q 004826 179 AAVLIGYGIARTTASAFNELRTAVFSKVALRTIRSVSRKVFSHLHELDLRYHLSRETGALNRIIDRGSRAINFILSSMVF 258 (728)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lr~~~f~~ll~l~~~~f~~~~~G~l~~~~~~~~~~i~~~~~~~~~ 258 (728)
..++++++ ++..++.+++.+++.+++.++..++|.++|+|++++|++||+++++|++.+|+++|.+.++..+...+.
T Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 187 (1284)
T 3g5u_A 111 AYYYTGIG---AGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIG 187 (1284)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111112 233456788899999999999999999999999999999999999999999999999999888776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcch
Q 004826 259 NVVPTILEISMVSGILAYKFGAPFAWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNE 338 (728)
Q Consensus 259 ~~~~~~~~~~~~~~il~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e 338 (728)
.++..++.++.. +++++.++|.+++++++++|+++++...+.+..++..++.++..++.++.+.|.++|+++||+|++|
T Consensus 188 ~~~~~~~~~i~~-~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e 266 (1284)
T 3g5u_A 188 MFFQAMATFFGG-FIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQ 266 (1284)
T ss_dssp HHHHHHHHHHHH-HHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCC
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcch
Confidence 666655444333 3445557888888888777777777766666666777777777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 339 AFEAEQYDEFLRRYEDAALKTQRSLAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGS 418 (728)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~ 418 (728)
+.+.++|++..+++.+...+..+..+...+...++.....++++++|++++..|.+|+|+++++..++..+..|+..+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~ 346 (1284)
T 3g5u_A 267 KKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASP 346 (1284)
T ss_dssp CSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888777777766666666666777778899999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccCCC-CCCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCC
Q 004826 419 VYRETVQSLVDMKSMFQLLEEKADIQDRD-NAMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSG 495 (728)
Q Consensus 419 ~~~~~~~a~~s~~rl~~ll~~~~~~~~~~-~~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SG 495 (728)
.+..++++.++++|++++++.+++.++.. ...+.+...|.|+|+||+|+|++ +.++|+||||+|+|||++|||||||
T Consensus 347 ~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sG 426 (1284)
T 3g5u_A 347 NIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSG 426 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCC
Confidence 99999999999999999999877643311 11112223578999999999984 3589999999999999999999999
Q ss_pred ccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccH
Q 004826 496 SGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIH 575 (728)
Q Consensus 496 SGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~ 575 (728)
||||||+++|+|+|+|++|+|++||+|+++++++++|++||||||||+||++||+|||.+|+++++++++++|++.++++
T Consensus 427 sGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~ 506 (1284)
T 3g5u_A 427 CGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAY 506 (1284)
T ss_dssp SSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHH
Q 004826 576 DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILN 655 (728)
Q Consensus 576 ~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~ 655 (728)
++|++||+||||.+||+|.+ |||||||||||||||++||+|||||||||+||++||+.|++
T Consensus 507 ~~i~~l~~g~~t~~~~~g~~-------------------LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~ 567 (1284)
T 3g5u_A 507 DFIMKLPHQFDTLVGERGAQ-------------------LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567 (1284)
T ss_dssp HHHHHSTTGGGCCCSSSSCS-------------------SCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHH
T ss_pred HHHHhccccccccccCCCCc-------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHH
Confidence 99999999999999999988 99999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhc
Q 004826 656 ALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNN 715 (728)
Q Consensus 656 ~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~ 715 (728)
.++++.+++|+|+||||++++++||+|+||++|+|+|+|+|+||++++|.|++++..|..
T Consensus 568 ~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 627 (1284)
T 3g5u_A 568 ALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTA 627 (1284)
T ss_dssp HHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC-
T ss_pred HHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhhh
Confidence 999988999999999999999999999999999999999999999999999999987743
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=5.2e-85 Score=814.99 Aligned_cols=562 Identities=27% Similarity=0.385 Sum_probs=462.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 125 LRVITALGFLVAAKVLNVQVPFLFKLAVDWLTTATTTATALAANSTFLALFGTPAAVLIGYGIARTTASAFNELRTAVFS 204 (728)
Q Consensus 125 ~~~~~~~~~~~~~~~~~l~~p~~~~~~iD~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (728)
+.+++++++.++..++....|+++..++|.+........ .......+. .+++++++ +..++.+++.+++.
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~------~~~~~l~i---~~~~~~~~~~~~~~ 774 (1284)
T 3g5u_A 705 PYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPET-QRQNSNLFS------LLFLILGI---ISFITFFLQGFTFG 774 (1284)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTH-HHHHHHHHH------HHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchh-hHHHHHHHH------HHHHHHHH---HHHHHHHHHHHHHH
Confidence 334455555555556667778888888887653221110 000111111 11111111 22345677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCccccc--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 004826 205 KVALRTIRSVSRKVFSHLHELDLRYHL--SRETGALNRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPF 282 (728)
Q Consensus 205 ~~~~~~~~~lr~~~f~~ll~l~~~~f~--~~~~G~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~l 282 (728)
+.+.++..++|.++|+|++++|+.||+ ++++|++.+++++|.+.++..+...+..++..++.++. .+++++.++|.+
T Consensus 775 ~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~-~~i~~~~~~~~l 853 (1284)
T 3g5u_A 775 KAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGT-GIIISLIYGWQL 853 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHH
Confidence 999999999999999999999999999 47899999999999998888877666655555544332 233445567777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Q 004826 283 AWITSLSVVAYVVFTLSVTQWRTKFRKAMNKADNDASTRAIDSLINYETVKYFNNEAFEAEQYDEFLRRYEDAALKTQRS 362 (728)
Q Consensus 283 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~IKaf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 362 (728)
++++++.+++++++.....+...+...+..+........+.|.+.|+++||+|++|+.+.++|.+..+...+...+...+
T Consensus 854 ~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1284)
T 3g5u_A 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHV 933 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776766665555555444444555555666777889999999999999999999999999998888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004826 363 LAFLNFGQNVIFSAALSTAMVLCSHGILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKAD 442 (728)
Q Consensus 363 ~~~~~~~~~~i~~~~~~~~l~~g~~~v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~ 442 (728)
.+....+...+.....++++++|++++..|.+++|.++++..++.....|+..+...+..++++..+++|++++++.+++
T Consensus 934 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~ 1013 (1284)
T 3g5u_A 934 FGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPE 1013 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77666666656666667777889999999999999999999999888999999988888899999999999999988766
Q ss_pred ccCCCC-CCCCCCCCceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 004826 443 IQDRDN-AMPLNLKGGSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (728)
Q Consensus 443 ~~~~~~-~~~~~~~~g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (728)
..+... ..+.+...|.|+|+||+|+|++ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 1014 ~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~ 1093 (1284)
T 3g5u_A 1014 IDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLD 1093 (1284)
T ss_dssp SSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESS
T ss_pred ccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 433211 1112223578999999999974 3479999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccc
Q 004826 520 GQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGR 597 (728)
Q Consensus 520 G~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~ 597 (728)
|+|+++++++++|++|+||||||.+|++||+|||.+|++ ..++++++++++.++++++++++|+||||.|||+|.+
T Consensus 1094 g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~-- 1171 (1284)
T 3g5u_A 1094 GKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ-- 1171 (1284)
T ss_dssp SSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCS--
T ss_pred CEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCc--
Confidence 999999999999999999999999999999999999976 4789999999999999999999999999999999988
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM 677 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~ 677 (728)
|||||||||||||||+++|+|||||||||+||+++|+.|++.|++..+|+|+|+||||+++++
T Consensus 1172 -----------------LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~ 1234 (1284)
T 3g5u_A 1172 -----------------LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ 1234 (1284)
T ss_dssp -----------------SCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG
T ss_pred -----------------cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH
Confidence 999999999999999999999999999999999999999999999889999999999999999
Q ss_pred hcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcc
Q 004826 678 QCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 678 ~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
+||||+||++|+|+|+|+|+||++++|.|++||..|...
T Consensus 1235 ~~dri~vl~~G~i~~~g~~~~l~~~~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1235 NADLIVVIQNGKVKEHGTHQQLLAQKGIYFSMVSVQAGA 1273 (1284)
T ss_dssp SCSEEEEEETBEEEEEECHHHHHHSCSHHHHHHHHHC--
T ss_pred cCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999998654
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.3e-73 Score=608.10 Aligned_cols=281 Identities=55% Similarity=0.881 Sum_probs=257.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHH
Q 004826 420 YRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKS 499 (728)
Q Consensus 420 ~~~~~~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKS 499 (728)
+..++++.++++|++++++.+++..+.....+.+...+.|+|+||+|+|++++++|+||||+|++||++|||||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKS 94 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKS 94 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHH
Confidence 45678889999999999988766443222222233356899999999998777899999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHH
Q 004826 500 TILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIM 579 (728)
Q Consensus 500 TL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~ 579 (728)
||+++|+|+|+|++|+|++||+|+++++..++|++||||||+|+||++||+|||.||.+.+++++++++++.+++++++.
T Consensus 95 TLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~ 174 (306)
T 3nh6_A 95 TILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIM 174 (306)
T ss_dssp HHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred hCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHH
Q 004826 580 NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS 659 (728)
Q Consensus 580 ~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 659 (728)
.+|+||||.+||+|.+ |||||||||+|||||+++|+|||||||||+||+++++.|++.|++
T Consensus 175 ~lp~gl~t~~~~~g~~-------------------LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~ 235 (306)
T 3nh6_A 175 AFPEGYRTQVGERGLK-------------------LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK 235 (306)
T ss_dssp HSTTGGGCEESTTSBC-------------------CCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred hccchhhhHhcCCcCC-------------------CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 9999999999999988 999999999999999999999999999999999999999999999
Q ss_pred HcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHHHhhhcchhh
Q 004826 660 LANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLWGQQNNTADA 719 (728)
Q Consensus 660 l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~~~q~~~~~~ 719 (728)
+.+++|+|+||||+++++.||+|+||++|+|+|.|+|+||++.+|.|+++|..|...++.
T Consensus 236 l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l~~~q~~~~~~ 295 (306)
T 3nh6_A 236 VCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQGQEET 295 (306)
T ss_dssp HHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHHHHHHHCC---
T ss_pred HcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHHHHHHHhhhhh
Confidence 989999999999999999999999999999999999999999999999999998765443
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.8e-60 Score=488.45 Aligned_cols=238 Identities=42% Similarity=0.681 Sum_probs=227.2
Q ss_pred ceEEEEEEEEEec-CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 457 GSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 457 g~I~f~nVsF~Y~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
..|+++||+|+|+ +++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|++|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4799999999995 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+||||++.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|+++.+++++.. |
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~-------------------L 146 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG-------------------L 146 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTC-------------------C
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCC-------------------C
Confidence 999999999999999999998766778889999999999999999999999999999987 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcC
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gt 695 (728)
|||||||++|||||+++|++||||||||+||+.+++.|.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+
T Consensus 147 SgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~ 226 (247)
T 2ff7_A 147 SGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGK 226 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999998877899999999999999999999999999999999
Q ss_pred hHHHhhc-cchHHHHHHhh
Q 004826 696 HDDLLTK-AGRYAQLWGQQ 713 (728)
Q Consensus 696 h~eLl~~-~g~Y~~l~~~q 713 (728)
++|+++. ++.|.+++..|
T Consensus 227 ~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 227 HKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp HHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHhh
Confidence 9999987 88999998765
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.6e-58 Score=482.95 Aligned_cols=239 Identities=48% Similarity=0.831 Sum_probs=226.5
Q ss_pred ceEEEEEEEEEecCC--ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 004826 457 GSIQFDNVHFSYLTE--RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~--~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 534 (728)
+.|+++||+|+|++. +++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||+|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753 4799999999999999999999999999999999999987 8999999999999998899999
Q ss_pred eEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 535 IGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 535 Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
|+||||++.+|+.|++|||.++.+..+++++.++++.+++.+++..+|+|+||.+++.+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~------------------- 155 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMK------------------- 155 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBC-------------------
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCc-------------------
Confidence 9999999999999999999998766678889999999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEc
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~G 694 (728)
||||||||++|||||+++|+|||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|
T Consensus 156 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKG 235 (260)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988889999999999999899999999999999999
Q ss_pred ChHHHhhccchHHHHHHhhhc
Q 004826 695 SHDDLLTKAGRYAQLWGQQNN 715 (728)
Q Consensus 695 th~eLl~~~g~Y~~l~~~q~~ 715 (728)
+++++++.++.|.++|..|..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~ 256 (260)
T 2ghi_A 236 THKDLLKLNGEYAEMWNMQSG 256 (260)
T ss_dssp CHHHHHHHTSHHHHHHHHHHC
T ss_pred CHHHHHhcChHHHHHHHhhhh
Confidence 999999988999999987743
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-59 Score=484.81 Aligned_cols=237 Identities=40% Similarity=0.652 Sum_probs=225.6
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+|+|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+...+|++|+||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 78999999996556899999999999999999999999999999999999999999999999999998888899999999
Q ss_pred cCCCCCCcccHHHHHHcC-CCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 539 PQDTVLFNDTIFHNIRYG-RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g-~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
||++.+|++|++|||.++ .+..+++++.++++.+++++++..+|+|+++.+++.+.. |||
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~-------------------LSg 142 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVK-------------------ISG 142 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBC-------------------CCH
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCc-------------------CCH
Confidence 999999999999999998 556778889999999999999999999999999999987 999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChH
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHD 697 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~ 697 (728)
|||||++|||||+++|++||||||||+||+.+++.|.+.|+++.+++|+|+|||+++.++.||+|++|++|+|++.|+++
T Consensus 143 Gq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~ 222 (243)
T 1mv5_A 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHN 222 (243)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999887889999999999999999999999999999999999
Q ss_pred HHhhccchHHHHHHhhh
Q 004826 698 DLLTKAGRYAQLWGQQN 714 (728)
Q Consensus 698 eLl~~~g~Y~~l~~~q~ 714 (728)
++++..+.|++++..|.
T Consensus 223 ~~~~~~~~~~~~~~~~~ 239 (243)
T 1mv5_A 223 ELVATHPLYAKYVSEQL 239 (243)
T ss_dssp HHHHHCHHHHHHHHCCC
T ss_pred HHHhccHHHHHHHHhhh
Confidence 99988888999998764
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=7.3e-58 Score=480.60 Aligned_cols=240 Identities=35% Similarity=0.599 Sum_probs=223.6
Q ss_pred ceEEEEEEEEEecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 004826 457 GSIQFDNVHFSYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (728)
Q Consensus 457 g~I~f~nVsF~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 534 (728)
+.|+++||+|+|++ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974 2689999999999999999999999999999999999999999999999999999888889999
Q ss_pred eEEEcCCCCCCcccHHHHHHcCCCCCCH-HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 535 IGVVPQDTVLFNDTIFHNIRYGRLSATE-EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 535 Ia~V~Qd~~LF~gTIreNI~~g~~~~sd-eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
|+||||++.+|+.|++|||.++.+..++ +++.++++.++++++++.+|+|+++.+++.+.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~------------------ 156 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ------------------ 156 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT------------------
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC------------------
Confidence 9999999999999999999998655554 678888999999999999999999999998877
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeEEEEeCCEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEIIVLENGKVI 691 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~IiVld~G~Iv 691 (728)
||||||||++|||||+++|+|||||||||+||+.+.+.|.+.|+++.+ ++|+|+|||+++.+..||+|++|++|+|+
T Consensus 157 -LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 157 -LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVC 235 (271)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998754 89999999999999899999999999999
Q ss_pred EEcChHHHhhccchHHHHHHhhhc
Q 004826 692 EQGSHDDLLTKAGRYAQLWGQQNN 715 (728)
Q Consensus 692 e~Gth~eLl~~~g~Y~~l~~~q~~ 715 (728)
+.|+++++++..+.|.+++..|..
T Consensus 236 ~~g~~~~l~~~~~~~~~~~~~~~~ 259 (271)
T 2ixe_A 236 EQGTHLQLMERGGCYRSMVEALAA 259 (271)
T ss_dssp EEECHHHHHHHTSHHHHHHHC---
T ss_pred EECCHHHHHhCcHHHHHHHHHhhc
Confidence 999999999888999999987743
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-55 Score=478.64 Aligned_cols=227 Identities=33% Similarity=0.541 Sum_probs=216.4
Q ss_pred CCceEEEEEEEEEec-CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhc
Q 004826 455 KGGSIQFDNVHFSYL-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK 533 (728)
Q Consensus 455 ~~g~I~f~nVsF~Y~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~ 533 (728)
..+.|+++||+|+|+ ++.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|++||+|+.+++...+|+
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 346899999999997 45689999999999999999999999999999999999998 9999999999999999999999
Q ss_pred ceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 534 ~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
.|+||||++.||..|++|||.+.. ...+++++++++.+++.+++.++|.+|+|.++++|.+
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~------------------ 155 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCV------------------ 155 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTT------------------
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhccccccccccccccc------------------
Confidence 999999999999999999998654 3578899999999999999999999999999999988
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~ 693 (728)
||||||||+||||||+++|+|||||||||+||+.+.+.+++.|+++.+++|+|+|||+++.+..||||+||++|+|++.
T Consensus 156 -LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~ 234 (390)
T 3gd7_A 156 -LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQY 234 (390)
T ss_dssp -SCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999988789999999999999999999999999999999
Q ss_pred cChHHHhhc
Q 004826 694 GSHDDLLTK 702 (728)
Q Consensus 694 Gth~eLl~~ 702 (728)
|+++|+.+.
T Consensus 235 g~~~el~~~ 243 (390)
T 3gd7_A 235 DSILELYHY 243 (390)
T ss_dssp SSHHHHHHC
T ss_pred CCHHHHHhC
Confidence 999999975
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.1e-54 Score=447.82 Aligned_cols=226 Identities=34% Similarity=0.561 Sum_probs=208.6
Q ss_pred eEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| .|+
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999974 46899999999999999999999999999999999999999999999999 499
Q ss_pred EEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
||||++.+|+.|++|||.++.+ .++++..++++.+++.+.+..+|.|++|.+++.+.. ||
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------LS 129 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVN-------------------LS 129 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBC-------------------CC
T ss_pred EEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCC-------------------CC
Confidence 9999999999999999999864 344566778888899899999999999999999887 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHH---HHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEE
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALK---SLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQ 693 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~---~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~ 693 (728)
||||||++|||||+++|+|||||||||+||+.+++.+.+.|. ++.+++|+|+|||+++.+..||+|++|++|+|++.
T Consensus 130 gGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~ 209 (237)
T 2cbz_A 130 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEM 209 (237)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999984 44568999999999999989999999999999999
Q ss_pred cChHHHhhccchHHHHHHhhhcc
Q 004826 694 GSHDDLLTKAGRYAQLWGQQNNT 716 (728)
Q Consensus 694 Gth~eLl~~~g~Y~~l~~~q~~~ 716 (728)
|+++|+++..+.|.+++..|...
T Consensus 210 g~~~~~~~~~~~~~~~~~~~~~~ 232 (237)
T 2cbz_A 210 GSYQELLARDGAFAEFLRTYASH 232 (237)
T ss_dssp ECHHHHHHHTSHHHHHHHHTCC-
T ss_pred CCHHHHhhccHHHHHHHHHHHhh
Confidence 99999999999999999988653
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=5.9e-54 Score=440.31 Aligned_cols=221 Identities=26% Similarity=0.458 Sum_probs=202.4
Q ss_pred ceEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 457 GSIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 457 g~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
+.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| .|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999973 56899999999999999999999999999999999999999999999998 59
Q ss_pred EEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 536 GVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 536 a~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+||||++.+|++|++|||.++.+ ..+..+.++++.+++.+++..+|.+++|.+++.+.+ |
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------------L 131 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT-------------------L 131 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTT-------------------S
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCc-------------------C
Confidence 99999999999999999999854 345566778888899999999999999999999877 9
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHH-HHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEc
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNA-LKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQG 694 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~-L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~G 694 (728)
|||||||++|||||+++|++||||||||+||+.+++.+.+. ++++.+++|+|+|||+++.++.||+|++|++|+|++.|
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g 211 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYG 211 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999997 45555689999999999999889999999999999999
Q ss_pred ChHHHhhccchHHHHH
Q 004826 695 SHDDLLTKAGRYAQLW 710 (728)
Q Consensus 695 th~eLl~~~g~Y~~l~ 710 (728)
+++++++.++.|.+++
T Consensus 212 ~~~~~~~~~~~~~~~~ 227 (229)
T 2pze_A 212 TFSELQNLQPDFSSKL 227 (229)
T ss_dssp CHHHHHTC--CHHHHH
T ss_pred CHHHHHhcChHHHHHh
Confidence 9999998777777665
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.8e-52 Score=436.53 Aligned_cols=221 Identities=28% Similarity=0.489 Sum_probs=190.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~i~~~~lR~~I 535 (728)
-|+++||+|+|++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+. +.+...+|+.|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 5999999999976667999999999999999999999999999999999999999999999999994 34456789999
Q ss_pred EEEcCCC--CCCcccHHHHHHcCC--CCCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 536 GVVPQDT--VLFNDTIFHNIRYGR--LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 536 a~V~Qd~--~LF~gTIreNI~~g~--~~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
|||||+| .+|..|++|||.++. ...+.+ ++.++++..++.++..+ ....
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~------------ 143 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDK-----------PTHC------------ 143 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTS-----------BGGG------------
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcC-----------Cccc------------
Confidence 9999997 588999999998863 223333 45666666666554332 2223
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++
T Consensus 144 -------LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~ 216 (275)
T 3gfo_A 144 -------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFV 216 (275)
T ss_dssp -------SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEE
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEE
Confidence 99999999999999999999999999999999999999999998875 38999999999999865 999999
Q ss_pred EeCCEEEEEcChHHHhhccchHHH
Q 004826 685 LENGKVIEQGSHDDLLTKAGRYAQ 708 (728)
Q Consensus 685 ld~G~Ive~Gth~eLl~~~g~Y~~ 708 (728)
|++|+|++.|+++|++.....+..
T Consensus 217 l~~G~i~~~g~~~~~~~~~~~~~~ 240 (275)
T 3gfo_A 217 MKEGRVILQGNPKEVFAEKEVIRK 240 (275)
T ss_dssp EETTEEEEEECHHHHTHHHHHHHH
T ss_pred EECCEEEEECCHHHHhcCHHHHHH
Confidence 999999999999999876554433
No 20
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=1.9e-51 Score=445.11 Aligned_cols=224 Identities=32% Similarity=0.528 Sum_probs=193.4
Q ss_pred eEEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---H
Q 004826 458 SIQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---L 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---l 531 (728)
-|+++||+++|+.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+..++... +
T Consensus 24 mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 24 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred eEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 59999999999742 47999999999999999999999999999999999999999999999999999998765 4
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHHcCC--CCCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 532 RKSIGVVPQDTVLFND-TIFHNIRYGR--LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~g-TIreNI~~g~--~~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
|+.||||||++.+|.. |++|||.++. ...+. +++.++++..++.++..+.| ..
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~-----------~~--------- 163 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYP-----------SN--------- 163 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCT-----------TT---------
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hh---------
Confidence 7899999999999875 9999998862 12232 34667777777766544433 12
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCe
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~ 681 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.|++.|+++. .|+|+|+|||+++.++. |||
T Consensus 164 ----------LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDr 233 (366)
T 3tui_C 164 ----------LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDC 233 (366)
T ss_dssp ----------SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999874 38999999999999875 999
Q ss_pred EEEEeCCEEEEEcChHHHhhcc-chH-HHHHH
Q 004826 682 IIVLENGKVIEQGSHDDLLTKA-GRY-AQLWG 711 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~~-g~Y-~~l~~ 711 (728)
|+||++|+|++.|+++|++... ..| +.+..
T Consensus 234 v~vl~~G~iv~~g~~~ev~~~p~~~~~~~~~~ 265 (366)
T 3tui_C 234 VAVISNGELIEQDTVSEVFSHPKTPLAQKFIQ 265 (366)
T ss_dssp EEEEETTEEEECCBHHHHHSSCCSHHHHHHHH
T ss_pred EEEEECCEEEEEcCHHHHHhCCCcHHHHHHHh
Confidence 9999999999999999998753 334 34443
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.4e-51 Score=424.17 Aligned_cols=213 Identities=30% Similarity=0.438 Sum_probs=180.8
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH----
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL---- 531 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l---- 531 (728)
|+++||+|+|+.. .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 7899999999742 479999999999999999999999999999999999999999999999999999998764
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHHcCC-----CCCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 532 RKSIGVVPQDTVLFND-TIFHNIRYGR-----LSATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~g-TIreNI~~g~-----~~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
|+.||||||++.+|.. |++|||.++. ...+. +++.++++..++.+.. .......
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~------ 145 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQ------ 145 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGG------
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhh------
Confidence 4579999999999987 9999998741 12232 3345555555554321 0122333
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhc
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~a 679 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.++.|
T Consensus 146 -------------LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~ 212 (235)
T 3tif_A 146 -------------LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG 212 (235)
T ss_dssp -------------SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTS
T ss_pred -------------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhC
Confidence 999999999999999999999999999999999999999999998753 89999999999988889
Q ss_pred CeEEEEeCCEEEEEcChHHHh
Q 004826 680 DEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eLl 700 (728)
|+|++|++|+|++.|+.+++.
T Consensus 213 d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 213 ERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp SEEEEEETTEEEEEEECC---
T ss_pred CEEEEEECCEEEEEcChhhhc
Confidence 999999999999999887754
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=8.4e-51 Score=419.82 Aligned_cols=219 Identities=25% Similarity=0.464 Sum_probs=187.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH-hcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL-RKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l-R~~Ia 536 (728)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+...+ |+.|+
T Consensus 6 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEEC-CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 489999999996 4689999999999999999999999999999999999999999999999999998887665 55699
Q ss_pred EEcCCCCCCcc-cHHHHHHcCC-CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~-~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
||||++.+|.+ |++|||.++. +..+.++..+.+ .+.++.++ |++.........
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~------------------- 139 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGT------------------- 139 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSS-------------------
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhh-------------------
Confidence 99999999987 9999999874 222223333222 23344443 444444555545
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhcCeEEEEeCCEEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLENGKVIE 692 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~aD~IiVld~G~Ive 692 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++
T Consensus 140 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 219 (240)
T 1ji0_A 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL 219 (240)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998875 589999999999876 5699999999999999
Q ss_pred EcChHHHhhc
Q 004826 693 QGSHDDLLTK 702 (728)
Q Consensus 693 ~Gth~eLl~~ 702 (728)
.|+++++.+.
T Consensus 220 ~g~~~~~~~~ 229 (240)
T 1ji0_A 220 EGKASELLDN 229 (240)
T ss_dssp EEEHHHHHTC
T ss_pred EcCHHHHhcC
Confidence 9999999754
No 23
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-50 Score=428.77 Aligned_cols=217 Identities=27% Similarity=0.471 Sum_probs=184.1
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
+.|+++||+|+| +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+|| +|+
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~ 102 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RIS 102 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEE
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEE
Confidence 469999999964 5799999999999999999999999999999999999999999999998 599
Q ss_pred EEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCC
Q 004826 537 VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS 616 (728)
Q Consensus 537 ~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS 616 (728)
||||++.+|++|++|||. +.. ..+..+.++++..++.+++..+|.+++|.+++.+.. ||
T Consensus 103 ~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-------------------LS 161 (290)
T 2bbs_A 103 FCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGIT-------------------LS 161 (290)
T ss_dssp EECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CC-------------------CC
T ss_pred EEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCc-------------------CC
Confidence 999999999999999998 642 345566778888899999999999999999999877 99
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHH-HHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcC
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNAL-KSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L-~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gt 695 (728)
||||||++|||||+++|++||||||||+||+.+++.+.+.+ +++.+++|+|+|||+++.++.||+|++|++|++++.|+
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~ 241 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGT 241 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCC
Confidence 99999999999999999999999999999999999999874 45556899999999999999999999999999999999
Q ss_pred hHHHhhccchHHHHH
Q 004826 696 HDDLLTKAGRYAQLW 710 (728)
Q Consensus 696 h~eLl~~~g~Y~~l~ 710 (728)
++|+++....|.+.+
T Consensus 242 ~~~l~~~~~~~~~~~ 256 (290)
T 2bbs_A 242 FSELQNLRPDFSSKL 256 (290)
T ss_dssp HHHHHHHCHHHHHHH
T ss_pred HHHHhhhcHHHHHHH
Confidence 999987555565544
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.8e-50 Score=420.69 Aligned_cols=221 Identities=28% Similarity=0.431 Sum_probs=193.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+|+.+.+...+++.++|
T Consensus 11 ~l~~~~l~~~~~-~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQ-QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeC-CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 599999999995 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCC-CcccHHHHHHcCCCC----CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 538 VPQDTVL-FNDTIFHNIRYGRLS----ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~----~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
|+|++.+ |..|++||+.++... ..++++.++++..++.++..+. ...
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~----------------- 141 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRD-----------YRV----------------- 141 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSB-----------GGG-----------------
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCC-----------ccc-----------------
Confidence 9999987 678999999987432 2345677777777765543221 123
Q ss_pred CCCChhHHHHHHHHHHhcc------CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEE
Q 004826 613 VSLSGGEKQRVALARAFLK------APPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEII 683 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~Ii 683 (728)
||||||||++|||||+. +|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|+
T Consensus 142 --LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~ 219 (266)
T 4g1u_C 142 --LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIM 219 (266)
T ss_dssp --CCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEE
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEE
Confidence 99999999999999999 9999999999999999999999999988753 479999999999986 599999
Q ss_pred EEeCCEEEEEcChHHHhhccchHHHHH
Q 004826 684 VLENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
+|++|+|++.|+++|++... ...+.|
T Consensus 220 vl~~G~i~~~g~~~~~~~~~-~l~~~~ 245 (266)
T 4g1u_C 220 LLAQGKLVACGTPEEVLNAE-TLTQWY 245 (266)
T ss_dssp EEETTEEEEEECHHHHCCHH-HHHHHC
T ss_pred EEECCEEEEEcCHHHHhCcH-HHHHHh
Confidence 99999999999999998642 333444
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=7.1e-50 Score=417.61 Aligned_cols=215 Identities=33% Similarity=0.523 Sum_probs=187.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~i~~~~lR~~I 535 (728)
-|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++. ..+...+|+.|
T Consensus 24 ~l~i~~l~~~y~-~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFG-SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 499999999995 568999999999999999999999999999999999999999999999999985 44566788999
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCC---CCCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGR---LSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~---~~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
+||||++.+|.. |++|||.++. ...+ ++++.++++..++.++..+. ...
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~------------ 159 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-----------PDS------------ 159 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSC-----------GGG------------
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCC-----------hhh------------
Confidence 999999999976 9999998852 1222 23466677777766543222 223
Q ss_pred cCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh-hcCeEEEE
Q 004826 608 RRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM-QCDEIIVL 685 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~-~aD~IiVl 685 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|
T Consensus 160 -------LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 160 -------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp -------SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred -------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999998874 4799999999999986 59999999
Q ss_pred eCCEEEEEcChHHHhhcc
Q 004826 686 ENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~ 703 (728)
++|+|++.|+++|+++..
T Consensus 233 ~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 233 DGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp ETTEEEEEECHHHHHHSC
T ss_pred ECCEEEEECCHHHHHhCc
Confidence 999999999999998653
No 26
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.4e-49 Score=416.78 Aligned_cols=212 Identities=29% Similarity=0.494 Sum_probs=189.7
Q ss_pred EEEEEEEEEec-CC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcc
Q 004826 459 IQFDNVHFSYL-TE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKS 534 (728)
Q Consensus 459 I~f~nVsF~Y~-~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~ 534 (728)
|+++||+|+|+ ++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 79999999997 33 6899999999999999999999999999999999999999999999999998753 77889
Q ss_pred eEEEcCCC--CCCcccHHHHHHcCCC-----CCCHHHHHHHHHHhccH--HHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 535 IGVVPQDT--VLFNDTIFHNIRYGRL-----SATEEEVYDAARRAAIH--DTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 535 Ia~V~Qd~--~LF~gTIreNI~~g~~-----~~sdeei~~A~~~a~l~--~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
|+||||++ .+|+.|++|||.++.. ...++++.++++..++. ++..+.| ..
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~---------- 138 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FF---------- 138 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GG----------
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hh----------
Confidence 99999996 5788999999998742 12356788899999987 7765544 22
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEII 683 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~Ii 683 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|+
T Consensus 139 ---------LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~ 209 (266)
T 2yz2_A 139 ---------LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV 209 (266)
T ss_dssp ---------SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEE
T ss_pred ---------CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999874 58999999999999875 99999
Q ss_pred EEeCCEEEEEcChHHHhhcc
Q 004826 684 VLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~ 703 (728)
+|++|++++.|+++++++..
T Consensus 210 ~l~~G~i~~~g~~~~~~~~~ 229 (266)
T 2yz2_A 210 VLEKGKKVFDGTRMEFLEKY 229 (266)
T ss_dssp EEETTEEEEEEEHHHHHHHS
T ss_pred EEECCEEEEeCCHHHHhcCc
Confidence 99999999999999998653
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-49 Score=414.21 Aligned_cols=213 Identities=25% Similarity=0.455 Sum_probs=188.5
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
+.|+++||+++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+ ....+|+.|+
T Consensus 14 ~~l~i~~l~~~y~-~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEE
T ss_pred CeEEEEEEEEEEC-CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEE
Confidence 4699999999995 5689999999999999999999999999999999999999999999999999987 5677889999
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
||||++.+|.+ |++|||.++.. ..+. +++.++++..++.++..+ ....
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~-----------~~~~-------------- 146 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD-----------RVST-------------- 146 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGS-----------BGGG--------------
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcC-----------Chhh--------------
Confidence 99999999887 99999987521 1222 456777777777665433 2223
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEEEeC
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIVLEN 687 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiVld~ 687 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++
T Consensus 147 -----LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~ 221 (256)
T 1vpl_A 147 -----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHN 221 (256)
T ss_dssp -----CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEET
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEEC
Confidence 99999999999999999999999999999999999999999998875 58999999999999876 999999999
Q ss_pred CEEEEEcChHHHhh
Q 004826 688 GKVIEQGSHDDLLT 701 (728)
Q Consensus 688 G~Ive~Gth~eLl~ 701 (728)
|++++.|+++|+.+
T Consensus 222 G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 222 GTIVETGTVEELKE 235 (256)
T ss_dssp TEEEEEEEHHHHHH
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999975
No 28
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=9.3e-50 Score=407.79 Aligned_cols=208 Identities=27% Similarity=0.395 Sum_probs=180.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH---Hh-c
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES---LR-K 533 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~---lR-~ 533 (728)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.+.+... +| +
T Consensus 4 ~l~~~~l~~~y~-~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIR-GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEEC-CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 489999999996 468999999999999999999999999999999999999999999999999999887653 44 7
Q ss_pred ceEEEcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 534 SIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 534 ~Ia~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
+|+||||++.+|. .|++||+.++.. ..+ ++++.++++..++.++.... -..
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~----------- 140 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRK-----------PYE----------- 140 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCC-----------GGG-----------
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCC-----------hhh-----------
Confidence 8999999999986 499999987521 112 23456666666665443222 223
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl 685 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++|
T Consensus 141 --------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l 212 (224)
T 2pcj_A 141 --------LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEM 212 (224)
T ss_dssp --------SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEE
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999998874 489999999999988889999999
Q ss_pred eCCEEEEEcCh
Q 004826 686 ENGKVIEQGSH 696 (728)
Q Consensus 686 d~G~Ive~Gth 696 (728)
++|+++++|+.
T Consensus 213 ~~G~i~~~g~~ 223 (224)
T 2pcj_A 213 KDGKVVGEITR 223 (224)
T ss_dssp ETTEEEEEEEC
T ss_pred ECCEEEEEeee
Confidence 99999999973
No 29
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-49 Score=415.50 Aligned_cols=215 Identities=31% Similarity=0.495 Sum_probs=186.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC----------CCC
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC----------EVT 527 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~----------~i~ 527 (728)
-|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. +++
T Consensus 6 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYG-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 499999999995 568999999999999999999999999999999999999999999999999986 244
Q ss_pred H---HHHhcceEEEcCCCCCCcc-cHHHHHHcCC---CCCC----HHHHHHHHHHhccHHH-HHhCCCcccchhhccccc
Q 004826 528 L---ESLRKSIGVVPQDTVLFND-TIFHNIRYGR---LSAT----EEEVYDAARRAAIHDT-IMNFPAKYSTVVGERGLK 595 (728)
Q Consensus 528 ~---~~lR~~Ia~V~Qd~~LF~g-TIreNI~~g~---~~~s----deei~~A~~~a~l~~~-I~~LP~G~dT~vgE~G~~ 595 (728)
. ..+|+.|+||||++.+|.. |++|||.++. ...+ ++++.++++..++.++ ..+. ...
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~~ 153 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------PVH 153 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------GGG
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC-----------ccc
Confidence 3 3568899999999999877 9999998842 1222 2446677777777665 3332 223
Q ss_pred cchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCch
Q 004826 596 GRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLT 674 (728)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLs 674 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++
T Consensus 154 -------------------LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~ 214 (262)
T 1b0u_A 154 -------------------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG 214 (262)
T ss_dssp -------------------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH
T ss_pred -------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 99999999999999999999999999999999999999999998874 4799999999999
Q ss_pred HHh-hcCeEEEEeCCEEEEEcChHHHhhcc
Q 004826 675 TAM-QCDEIIVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 675 ti~-~aD~IiVld~G~Ive~Gth~eLl~~~ 703 (728)
.+. .||+|++|++|+|++.|+++++++..
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVFGNP 244 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 986 59999999999999999999998643
No 30
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.1e-49 Score=427.66 Aligned_cols=215 Identities=29% Similarity=0.524 Sum_probs=187.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC--CCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE--VTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~--i~~~~lR~~I 535 (728)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.|+.+ ......++.|
T Consensus 4 ~l~i~~ls~~y~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 489999999995 5789999999999999999999999999999999999999999999999999833 2234567899
Q ss_pred EEEcCCCCCCcc-cHHHHHHcCCCC--C----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 536 GVVPQDTVLFND-TIFHNIRYGRLS--A----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 536 a~V~Qd~~LF~g-TIreNI~~g~~~--~----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
|||+|++.||.. |++|||.|+... . .++++.++++..++.++..+.| ..
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~------------- 138 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HE------------- 138 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GG-------------
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hh-------------
Confidence 999999999965 999999998431 1 1345778888888876655443 12
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVL 685 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVl 685 (728)
||||||||++|||||+.+|++||||||||+||+.+...+++.|.++. .++|+|+|||+++.+.. ||||+||
T Consensus 139 ------LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl 212 (359)
T 3fvq_A 139 ------LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVM 212 (359)
T ss_dssp ------SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEE
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEE
Confidence 99999999999999999999999999999999999999998776653 48999999999998754 9999999
Q ss_pred eCCEEEEEcChHHHhhcc
Q 004826 686 ENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~ 703 (728)
++|+|++.|+++|+.+..
T Consensus 213 ~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 213 KQGRILQTASPHELYRQP 230 (359)
T ss_dssp ETTEEEEEECHHHHHHSC
T ss_pred ECCEEEEEeCHHHHHhCc
Confidence 999999999999998753
No 31
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.1e-49 Score=412.19 Aligned_cols=211 Identities=25% Similarity=0.400 Sum_probs=181.0
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia 536 (728)
-|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.+||.++.+.+. ..+|+.|+
T Consensus 7 ~l~i~~l~~~y~-~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFG-EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEET-TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEEC-CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 499999999995 4689999999999999999999999999999999999999999999999999988765 34678899
Q ss_pred EEcCCCCCCc-ccHHHHHHcCCCC---------------CC----HHHHHHHHHHhccHHHHHhCCCcccchhhcccccc
Q 004826 537 VVPQDTVLFN-DTIFHNIRYGRLS---------------AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKG 596 (728)
Q Consensus 537 ~V~Qd~~LF~-gTIreNI~~g~~~---------------~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~ 596 (728)
||||++.+|. .|++|||.++... .+ .+++.++++..++.+ ........
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~- 153 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSH-----------LYDRKAGE- 153 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGG-----------GTTSBGGG-
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCch-----------hhCCCchh-
Confidence 9999999886 5999999986321 11 122344444444433 33333444
Q ss_pred chhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchH
Q 004826 597 RSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTT 675 (728)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLst 675 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.
T Consensus 154 ------------------LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 154 ------------------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp ------------------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred ------------------CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 999999999999999999999999999999999999999999988754 8999999999998
Q ss_pred Hh-hcCeEEEEeCCEEEEEcChHHH
Q 004826 676 AM-QCDEIIVLENGKVIEQGSHDDL 699 (728)
Q Consensus 676 i~-~aD~IiVld~G~Ive~Gth~eL 699 (728)
+. .||+|++|++|+|++.|+++|+
T Consensus 216 ~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (257)
T 1g6h_A 216 VLNYIDHLYVMFNGQIIAEGRGEEE 240 (257)
T ss_dssp TGGGCSEEEEEETTEEEEEEESHHH
T ss_pred HHHhCCEEEEEECCEEEEEeCHHHh
Confidence 75 5999999999999999999993
No 32
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=2.5e-49 Score=431.19 Aligned_cols=216 Identities=29% Similarity=0.475 Sum_probs=189.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. ++.|||
T Consensus 3 ~l~~~~l~~~yg-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 489999999995 56899999999999999999999999999999999999999999999999999988765 478999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+.| ..
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p-----------~~--------------- 133 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KA--------------- 133 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCG-----------GG---------------
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hH---------------
Confidence 9999999965 99999998631 223 345677777777766554443 12
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld~ 687 (728)
||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||||+||++
T Consensus 134 ----LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~ 209 (381)
T 3rlf_A 134 ----LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDA 209 (381)
T ss_dssp ----SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEET
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999988753 899999999999875 4999999999
Q ss_pred CEEEEEcChHHHhhcc-chH
Q 004826 688 GKVIEQGSHDDLLTKA-GRY 706 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~-g~Y 706 (728)
|+|++.|+++|+.+.. ..|
T Consensus 210 G~i~~~g~~~~l~~~p~~~~ 229 (381)
T 3rlf_A 210 GRVAQVGKPLELYHYPADRF 229 (381)
T ss_dssp TEEEEEECHHHHHHCCSBHH
T ss_pred CEEEEEeCHHHHHhCCccHH
Confidence 9999999999998753 344
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.9e-49 Score=406.63 Aligned_cols=217 Identities=28% Similarity=0.381 Sum_probs=192.6
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+|+ ++|+|+||+|++||++||+||||||||||+++|+|+++|+ |+|.++|.++.+++...+|++|+|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 3899999987 5999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EcCCCCCCcc-cHHHHHHcCC-CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGR-LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~-~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
|||++.+|.+ |++|||.++. +..+++++.++++..++.++..+ .... |
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~-------------------L 127 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----------STNQ-------------------L 127 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTS-----------BGGG-------------------C
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcC-----------Chhh-------------------C
Confidence 9999998875 9999999974 22247778888888888765432 2333 9
Q ss_pred ChhHHHHHHHHHHhccCCC-------EEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH-hhcCeEEEEe
Q 004826 616 SGGEKQRVALARAFLKAPP-------ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA-MQCDEIIVLE 686 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~-------ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti-~~aD~IiVld 686 (728)
|||||||++|||||+.+|+ +||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|+
T Consensus 128 SgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~ 207 (249)
T 2qi9_C 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLK 207 (249)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 9999999999999999999 999999999999999999999999874 589999999999998 5699999999
Q ss_pred CCEEEEEcChHHHhhccchHHHHHH
Q 004826 687 NGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
+|++++.|+++|+.+.... .+.+.
T Consensus 208 ~G~i~~~g~~~~~~~~~~~-~~~~~ 231 (249)
T 2qi9_C 208 GGKMLASGRREEVLTPPNL-AQAYG 231 (249)
T ss_dssp TTEEEEEEEHHHHSCHHHH-HHHHS
T ss_pred CCEEEEeCCHHHHhcChhH-HHHhC
Confidence 9999999999999863333 44553
No 34
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.2e-49 Score=416.33 Aligned_cols=214 Identities=27% Similarity=0.439 Sum_probs=185.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC--CCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC--EVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~--~i~~~~lR~~I 535 (728)
-|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. +.+...+|++|
T Consensus 21 ~l~~~~l~~~y~-~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQ-GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEEC-CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 599999999995 468999999999999999999999999999999999999999999999999998 78888899999
Q ss_pred EEEcCCCCC-Ccc--cHHHHHHcCCCC-------CCH---HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 536 GVVPQDTVL-FND--TIFHNIRYGRLS-------ATE---EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 536 a~V~Qd~~L-F~g--TIreNI~~g~~~-------~sd---eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
+||||++.+ |.. |++|||.++... ..+ +++.++++..++.++.. .....
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~-----------~~~~~------- 161 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQ-----------QYIGY------- 161 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTT-----------SBGGG-------
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhc-----------CChhh-------
Confidence 999999875 555 999999987411 122 34566666666654322 22233
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeE--EEeccCchHH-hh
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTS--IFIAHRLTTA-MQ 678 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~Tv--IvIaHRLsti-~~ 678 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+ +.
T Consensus 162 ------------LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~ 229 (279)
T 2ihy_A 162 ------------LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITAN 229 (279)
T ss_dssp ------------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTT
T ss_pred ------------CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHh
Confidence 999999999999999999999999999999999999999999988754 7999 9999999987 45
Q ss_pred cCeEEEEeCCEEEEEcChHHHhhc
Q 004826 679 CDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
||+|++|++|+|++.|+++|+.+.
T Consensus 230 ~d~v~~l~~G~i~~~g~~~~~~~~ 253 (279)
T 2ihy_A 230 FSKILLLKDGQSIQQGAVEDILTS 253 (279)
T ss_dssp CCEEEEEETTEEEEEEEHHHHCSH
T ss_pred CCEEEEEECCEEEEECCHHHHhcc
Confidence 999999999999999999999764
No 35
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-49 Score=404.52 Aligned_cols=209 Identities=32% Similarity=0.527 Sum_probs=181.5
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+|+|++ +|+|+||+|++ |++||+||||||||||+++|+|+++|++|+|.+||+++.+.+ ..|++|+||
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCC
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEE
Confidence 689999999953 59999999999 999999999999999999999999999999999999997643 457899999
Q ss_pred cCCCCCCcc-cHHHHHHcCCCCCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRLSAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
||++.+|.. |++||+.++..... ++++.++++..++.++..+.| ..
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~------------------ 126 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKP-----------AR------------------ 126 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCG-----------GG------------------
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCCh-----------hh------------------
Confidence 999999987 99999999753211 344666666666655433322 23
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeCCEE
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKV 690 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~G~I 690 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++
T Consensus 127 -LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i 205 (240)
T 2onk_A 127 -LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205 (240)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999988753 89999999999976 45999999999999
Q ss_pred EEEcChHHHhhcc
Q 004826 691 IEQGSHDDLLTKA 703 (728)
Q Consensus 691 ve~Gth~eLl~~~ 703 (728)
++.|+++|+++..
T Consensus 206 ~~~g~~~~~~~~~ 218 (240)
T 2onk_A 206 VEKGKLKELFSAK 218 (240)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEECCHHHHHhCc
Confidence 9999999998654
No 36
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=7e-49 Score=425.03 Aligned_cols=215 Identities=32% Similarity=0.549 Sum_probs=189.7
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
..|+++||+++|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+. .++.|+
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEE
Confidence 369999999999545679999999999999999999999999999999999999999999999999987664 478999
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
||+|++.+|.. |++|||.|+.. ..+ ++++.++++..++.++..+.|. .
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----------~-------------- 145 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH-----------E-------------- 145 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----------G--------------
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcc-----------c--------------
Confidence 99999999975 99999998631 122 3457788888888776555441 2
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeEEEEe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEIIVLE 686 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~IiVld 686 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|+||+
T Consensus 146 -----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~ 220 (355)
T 1z47_A 146 -----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLH 220 (355)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999988753 799999999999875 499999999
Q ss_pred CCEEEEEcChHHHhhcc
Q 004826 687 NGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 687 ~G~Ive~Gth~eLl~~~ 703 (728)
+|+|++.|+++|+.+..
T Consensus 221 ~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 221 EGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp TTEEEEEECHHHHHHSC
T ss_pred CCEEEEEcCHHHHHhCc
Confidence 99999999999998753
No 37
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.4e-48 Score=421.80 Aligned_cols=213 Identities=34% Similarity=0.530 Sum_probs=189.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEEEC-CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 389999999995 56899999999999999999999999999999999999999999999999999887754 678999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.+|.. |++|||.|+... .+ ++++.++++..++.++..+.| ..
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~--------------- 133 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQ--------------- 133 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GG---------------
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hh---------------
Confidence 9999999975 999999997421 22 245778888888877665544 12
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~ 687 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|+||++
T Consensus 134 ----LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~ 209 (359)
T 2yyz_A 134 ----LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQ 209 (359)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999988753 89999999999987 45999999999
Q ss_pred CEEEEEcChHHHhhcc
Q 004826 688 GKVIEQGSHDDLLTKA 703 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~ 703 (728)
|+|++.|+++|+.+..
T Consensus 210 G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 210 GKLVQYGTPDEVYDSP 225 (359)
T ss_dssp TEEEEEECHHHHHHSC
T ss_pred CEEEEeCCHHHHHhCc
Confidence 9999999999998754
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=9.2e-49 Score=425.53 Aligned_cols=213 Identities=31% Similarity=0.545 Sum_probs=188.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|||
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp CEEEEEEEEESS-SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEeEEEEEC-CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 389999999995 46899999999999999999999999999999999999999999999999999887754 578999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.||.. |++|||.|+.. ..+ ++++.++++..++.++..+.| ..
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~--------------- 133 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQ--------------- 133 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GG---------------
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hh---------------
Confidence 9999999975 99999998621 122 345777888888776655443 12
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~ 687 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|+||++
T Consensus 134 ----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~ 209 (362)
T 2it1_A 134 ----LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIRE 209 (362)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999988753 89999999999987 45999999999
Q ss_pred CEEEEEcChHHHhhcc
Q 004826 688 GKVIEQGSHDDLLTKA 703 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~ 703 (728)
|+|++.|+++|+++..
T Consensus 210 G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 210 GEILQVGTPDEVYYKP 225 (362)
T ss_dssp TEEEEEECHHHHHHSC
T ss_pred CEEEEEcCHHHHHhCc
Confidence 9999999999998754
No 39
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.4e-48 Score=405.59 Aligned_cols=211 Identities=25% Similarity=0.362 Sum_probs=174.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHH-hcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~~ 534 (728)
-|+++||+|+|+ ++++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |..
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASID-GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEEC-CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 389999999995 46899999999999999999999999999999999999 89999999999999999887665 556
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCCC-----CCC----HHHHHHHHHHhccH-HHHHhCCCcccchhhccccccchhHHHh
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGRL-----SAT----EEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~~-----~~s----deei~~A~~~a~l~-~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
++||||++.+|.+ |++||+.++.. ... ++++.++++..++. ++.. ..+++ +
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-------~~~~~---~-------- 143 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLS-------RYLNE---G-------- 143 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGG-------SBTTC---C--------
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhc-------CCccc---C--------
Confidence 9999999999976 99999987521 112 23345555555552 2221 11211 2
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh--cC
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ--CD 680 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~--aD 680 (728)
||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||
T Consensus 144 -----------LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d 212 (250)
T 2d2e_A 144 -----------FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPD 212 (250)
T ss_dssp ---------------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCS
T ss_pred -----------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999885 47999999999999886 59
Q ss_pred eEEEEeCCEEEEEcChHH
Q 004826 681 EIIVLENGKVIEQGSHDD 698 (728)
Q Consensus 681 ~IiVld~G~Ive~Gth~e 698 (728)
+|++|++|++++.|++++
T Consensus 213 ~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 213 KVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEEETTEEEEEESHHH
T ss_pred EEEEEECCEEEEEeCHHH
Confidence 999999999999999873
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.7e-48 Score=420.14 Aligned_cols=211 Identities=34% Similarity=0.523 Sum_probs=187.7
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
|+++||+++|++ + +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+. .|++||||
T Consensus 2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEE
T ss_pred EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEE
Confidence 789999999964 4 9999999999999999999999999999999999999999999999999987654 47899999
Q ss_pred cCCCCCCcc-cHHHHHHcCCC---CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 539 PQDTVLFND-TIFHNIRYGRL---SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 539 ~Qd~~LF~g-TIreNI~~g~~---~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
+|++.||.. |++|||.|+.. ...++++.++++..++.++..+.| ..
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~------------------- 127 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LT------------------- 127 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GG-------------------
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hh-------------------
Confidence 999999976 99999998631 112367888888888877655443 12
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeCCEEE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLENGKVI 691 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~G~Iv 691 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|+||++|+|+
T Consensus 128 LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~ 207 (348)
T 3d31_A 128 LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLI 207 (348)
T ss_dssp SCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 89999999999876 559999999999999
Q ss_pred EEcChHHHhhcc
Q 004826 692 EQGSHDDLLTKA 703 (728)
Q Consensus 692 e~Gth~eLl~~~ 703 (728)
+.|+++|+.++.
T Consensus 208 ~~g~~~~~~~~p 219 (348)
T 3d31_A 208 QVGKPEEIFEKP 219 (348)
T ss_dssp EEECHHHHHSSC
T ss_pred EECCHHHHHhCc
Confidence 999999998753
No 41
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.1e-48 Score=421.17 Aligned_cols=213 Identities=26% Similarity=0.461 Sum_probs=183.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.+.. ++.|||
T Consensus 11 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFG-NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred eEEEEEEEEEEC-CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 499999999995 46899999999999999999999999999999999999999999999999999887754 578999
Q ss_pred EcCCCCCCcc-cHHHHHHcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 538 VPQDTVLFND-TIFHNIRYGRL--SATE----EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 538 V~Qd~~LF~g-TIreNI~~g~~--~~sd----eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
|+|++.||.. |++|||.|+.. ..+. +++.++++..++.++..+.|. .
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----------~--------------- 141 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-----------Q--------------- 141 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----------T---------------
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChh-----------h---------------
Confidence 9999999965 99999999853 1232 357778888888776555441 2
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEEEEeC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEIIVLEN 687 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~IiVld~ 687 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|+||++
T Consensus 142 ----LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~ 217 (372)
T 1v43_A 142 ----LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNR 217 (372)
T ss_dssp ----CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEET
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999988753 79999999999987 46999999999
Q ss_pred CEEEEEcChHHHhhcc
Q 004826 688 GKVIEQGSHDDLLTKA 703 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~ 703 (728)
|+|++.|+++|+.+..
T Consensus 218 G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 218 GQLLQIGSPTEVYLRP 233 (372)
T ss_dssp TEEEEEECHHHHHHCC
T ss_pred CEEEEeCCHHHHHhCc
Confidence 9999999999998753
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=2.2e-48 Score=422.14 Aligned_cols=215 Identities=30% Similarity=0.461 Sum_probs=188.5
Q ss_pred eEEEEEEEEEecCCce--eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC---HHHHh
Q 004826 458 SIQFDNVHFSYLTERK--ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT---LESLR 532 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~--vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~---~~~lR 532 (728)
.|+++||+++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+ ....+
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 3899999999964 55 999999999999999999999999999999999999999999999999987621 33457
Q ss_pred cceEEEcCCCCCCcc-cHHHHHHcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 533 KSIGVVPQDTVLFND-TIFHNIRYGRLS--AT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF~g-TIreNI~~g~~~--~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
++||||+|++.||.. |++|||.|+... .+ ++++.++++..++.++..+.| ..
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~---------- 140 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RE---------- 140 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GG----------
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hh----------
Confidence 899999999999976 999999997431 22 345778888888877655544 12
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCeE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDEI 682 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~I 682 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|
T Consensus 141 ---------LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri 211 (353)
T 1oxx_K 141 ---------LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRV 211 (353)
T ss_dssp ---------SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEE
T ss_pred ---------CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999999999999999999999999999999999999988753 799999999999875 59999
Q ss_pred EEEeCCEEEEEcChHHHhhcc
Q 004826 683 IVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~~~ 703 (728)
+||++|+|++.|+++|+++..
T Consensus 212 ~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 212 GVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp EEEETTEEEEEECHHHHHHSC
T ss_pred EEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999998753
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.5e-48 Score=403.37 Aligned_cols=215 Identities=23% Similarity=0.317 Sum_probs=179.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC--CCCCCCEEEECCEeCCCCCHHHH-hcc
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS--FDTHSGSIRIDGQDICEVTLESL-RKS 534 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl--y~p~~G~I~idG~di~~i~~~~l-R~~ 534 (728)
-|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+ ++|++|+|.+||.++.+++.... |..
T Consensus 20 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVE-DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEET-TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEEC-CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 599999999995 57899999999999999999999999999999999999 67999999999999998887665 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHHcCC---------CCCCHH----HHHHHHHHhccHHHHHhCCCcccchhhccccccchhH
Q 004826 535 IGVVPQDTVLFND-TIFHNIRYGR---------LSATEE----EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLL 600 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-TIreNI~~g~---------~~~sde----ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~ 600 (728)
|+||+|++.+|.+ |++||+.++. +..+.+ ++.++++..++ ++.+.++-..
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~----- 162 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM-----------PEDLLTRSVN----- 162 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC-----------CTTTTTSBTT-----
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC-----------ChhHhcCCcc-----
Confidence 9999999999876 8999986531 122332 23444444443 2222222110
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ- 678 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~- 678 (728)
.+||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+..
T Consensus 163 ------------~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~ 230 (267)
T 2zu0_C 163 ------------VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYI 230 (267)
T ss_dssp ------------TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTS
T ss_pred ------------cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhh
Confidence 1299999999999999999999999999999999999999999999875 47999999999999876
Q ss_pred -cCeEEEEeCCEEEEEcChHHHhh
Q 004826 679 -CDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 679 -aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
||+|++|++|+|++.|+++++..
T Consensus 231 ~~d~v~~l~~G~i~~~g~~~~~~~ 254 (267)
T 2zu0_C 231 KPDYVHVLYQGRIVKSGDFTLVKQ 254 (267)
T ss_dssp CCSEEEEEETTEEEEEECTTHHHH
T ss_pred cCCEEEEEECCEEEEEcCHHHHhh
Confidence 89999999999999999998753
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=6.9e-48 Score=420.77 Aligned_cols=213 Identities=29% Similarity=0.454 Sum_probs=187.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC------CCHHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE------VTLESL 531 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~------i~~~~l 531 (728)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+ .+. .
T Consensus 3 ~l~~~~l~~~y~-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG-EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEEC-CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 489999999995 5689999999999999999999999999999999999999999999999999876 554 3
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHHcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 532 RKSIGVVPQDTVLFN-DTIFHNIRYGRL--SAT----EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~-gTIreNI~~g~~--~~s----deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
++.||||+|++.||. .|++|||.|+.. ..+ ++++.++++..++.++..+.| ..
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~--------- 139 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKP-----------RE--------- 139 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GG---------
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------cc---------
Confidence 678999999999996 599999998631 122 245777888888876655443 12
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHh-hcCe
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAM-QCDE 681 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~-~aD~ 681 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+
T Consensus 140 ----------LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adr 209 (372)
T 1g29_1 140 ----------LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR 209 (372)
T ss_dssp ----------SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSE
T ss_pred ----------CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCE
Confidence 999999999999999999999999999999999999999999988753 799999999999875 5999
Q ss_pred EEEEeCCEEEEEcChHHHhhcc
Q 004826 682 IIVLENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eLl~~~ 703 (728)
|+||++|+|++.|+++|+++..
T Consensus 210 i~vl~~G~i~~~g~~~~l~~~p 231 (372)
T 1g29_1 210 IAVMNRGVLQQVGSPDEVYDKP 231 (372)
T ss_dssp EEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEeCCEEEEeCCHHHHHhCc
Confidence 9999999999999999998753
No 45
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.5e-47 Score=398.24 Aligned_cols=208 Identities=27% Similarity=0.409 Sum_probs=179.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
-|+++||+|+|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|. +++.|+|
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEE
Confidence 489999999996356899999999999999999999999999999999999999999998 4678999
Q ss_pred EcCCCCCC-cccHHHHHHcCCC---C----CC---HHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 538 VPQDTVLF-NDTIFHNIRYGRL---S----AT---EEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 538 V~Qd~~LF-~gTIreNI~~g~~---~----~s---deei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
|||++.+| ..|++|||.++.. . .. ++++.++++..++.++..+ ...+
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~----------- 128 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----------EFTS----------- 128 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTS-----------BGGG-----------
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcC-----------Chhh-----------
Confidence 99999988 6799999998741 0 11 3457777887777665433 2233
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHH-hhcCeEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTA-MQCDEII 683 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti-~~aD~Ii 683 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|+
T Consensus 129 --------LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~ 200 (253)
T 2nq2_C 129 --------LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTL 200 (253)
T ss_dssp --------SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEE
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999988754 79999999999988 5699999
Q ss_pred EEeCCEEEEEcChHHHhhccchHHHHH
Q 004826 684 VLENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 684 Vld~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
+|++|+ ++.|+++|+++.. .+.+.+
T Consensus 201 ~l~~G~-~~~g~~~~~~~~~-~~~~~~ 225 (253)
T 2nq2_C 201 LLNKQN-FKFGETRNILTSE-NLTALF 225 (253)
T ss_dssp EEETTE-EEEEEHHHHCCHH-HHHHHH
T ss_pred EEeCCe-EecCCHHHHhCcH-HHHHHh
Confidence 999999 9999999997542 344444
No 46
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.2e-47 Score=400.85 Aligned_cols=206 Identities=22% Similarity=0.299 Sum_probs=182.1
Q ss_pred EEEEEEEEEecCC---ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 459 IQFDNVHFSYLTE---RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 459 I~f~nVsF~Y~~~---~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
|+++||+++|++. +++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.++|.++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999742 689999999999 9999999999999999999999999 9999999999998765 33 7899
Q ss_pred E-EEcCCCCCCcccHHHHHHcCCC--CCCHHHHHHHHHHhccH-HHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 536 G-VVPQDTVLFNDTIFHNIRYGRL--SATEEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 536 a-~V~Qd~~LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~-~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
+ ||||++.+ +.|++|||.++.+ ...++++.++++..++. +. .......
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~---------------- 128 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEI-----------LRRKLYK---------------- 128 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGG-----------GGSBGGG----------------
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhH-----------hcCChhh----------------
Confidence 9 99999999 9999999988642 34567777777777665 43 2233334
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHh-hcC-eEEEEeCCE
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAM-QCD-EIIVLENGK 689 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~-~aD-~IiVld~G~ 689 (728)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|||+++.+. .|| +|++|++|+
T Consensus 129 ---LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~ 203 (263)
T 2pjz_A 129 ---LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNR 203 (263)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTE
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCE
Confidence 999999999999999999999999999999999999999999998754 9999999999875 699 999999999
Q ss_pred EEEEcChHHHhhc
Q 004826 690 VIEQGSHDDLLTK 702 (728)
Q Consensus 690 Ive~Gth~eLl~~ 702 (728)
+++.|+++|+.+.
T Consensus 204 i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 204 LQGPISVSELLES 216 (263)
T ss_dssp EEEEEEHHHHHTE
T ss_pred EEEecCHHHHHhh
Confidence 9999999999754
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-46 Score=377.19 Aligned_cols=197 Identities=18% Similarity=0.321 Sum_probs=167.7
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
..|+++||+++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.|+
T Consensus 9 ~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred ceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 36999999999964 8999999999999999999999999999999999999999999999999986 3688999
Q ss_pred EEcCCCCCCcc-cHHHHHHcCCC----CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 537 VVPQDTVLFND-TIFHNIRYGRL----SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 537 ~V~Qd~~LF~g-TIreNI~~g~~----~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
||||++.+|.+ |++|||.++.. ...++++.++++..++.+ . ......
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~-~~~~~~---------------- 133 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-----------L-KKKLGE---------------- 133 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-----------T-TSBGGG----------------
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-----------C-CCChhh----------------
Confidence 99999999986 99999988521 123566777777665543 2 233444
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEeCCEE
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLENGKV 690 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld~G~I 690 (728)
||||||||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+..++..+|+..|+|
T Consensus 134 ---LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~ 210 (214)
T 1sgw_A 134 ---LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKI 210 (214)
T ss_dssp ---SCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC--
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCcc
Confidence 99999999999999999999999999999999999999999998875 47999999999999887544456667777
Q ss_pred E
Q 004826 691 I 691 (728)
Q Consensus 691 v 691 (728)
-
T Consensus 211 ~ 211 (214)
T 1sgw_A 211 D 211 (214)
T ss_dssp -
T ss_pred c
Confidence 3
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=2.3e-46 Score=397.38 Aligned_cols=241 Identities=17% Similarity=0.194 Sum_probs=204.7
Q ss_pred HhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCCCCCCceEEEEEEEEEe
Q 004826 389 ILSGEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPLNLKGGSIQFDNVHFSY 468 (728)
Q Consensus 389 v~~g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y 468 (728)
...+..+-+.+.+|+.+..+ ..|+..++.++..++++..+.+|+.++++.+++..+... +.+...+.|+|+||+|+|
T Consensus 35 ~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y 111 (305)
T 2v9p_A 35 YALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELIT 111 (305)
T ss_dssp HHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHH
T ss_pred HHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEc
Confidence 34566778899999888777 589999999999999999999999999987654322111 111112459999999999
Q ss_pred cCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCccc
Q 004826 469 LTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT 548 (728)
Q Consensus 469 ~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gT 548 (728)
+ .++|+++||+|+||+++|||||||||||||+++|+|+| +|+| +++|+|++++|.+|
T Consensus 112 ~--~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 112 F--INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp H--HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred C--hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 7 68999999999999999999999999999999999999 8998 46789999999999
Q ss_pred HHH-HHHcCCCCCCHHHHHHHHHHhccHHHHHh-CCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHH
Q 004826 549 IFH-NIRYGRLSATEEEVYDAARRAAIHDTIMN-FPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALA 626 (728)
Q Consensus 549 Ire-NI~~g~~~~sdeei~~A~~~a~l~~~I~~-LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIA 626 (728)
++| ||.|+ +++++ +++++|+. ||+||| |.+ |||||||| |
T Consensus 169 i~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~-------------------LSgGqkQR---A 209 (305)
T 2v9p_A 169 LADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYP-------------------VSIDRKHK---A 209 (305)
T ss_dssp GTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCC-------------------EECCCSSC---C
T ss_pred HHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccC-------------------cCHHHHHH---H
Confidence 998 99997 34554 34678888 999998 656 99999999 9
Q ss_pred HHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchH
Q 004826 627 RAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRY 706 (728)
Q Consensus 627 RALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y 706 (728)
||++++|+||| ||+||+++|+.|.. +|||+++++.||+| ||++|+|++.|+|+|| ++.|
T Consensus 210 RAll~~p~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y 268 (305)
T 2v9p_A 210 AVQIKAPPLLV----TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFF 268 (305)
T ss_dssp CCEECCCCEEE----EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHH
T ss_pred HHHhCCCCEEE----ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHH
Confidence 99999999999 99999999998862 39999999999999 9999999999999999 7899
Q ss_pred HHHHHhhhc
Q 004826 707 AQLWGQQNN 715 (728)
Q Consensus 707 ~~l~~~q~~ 715 (728)
+++|..|..
T Consensus 269 ~~l~~~~~~ 277 (305)
T 2v9p_A 269 VRLWGRLDL 277 (305)
T ss_dssp HHSTTTTTC
T ss_pred HHHHHHccc
Confidence 999987743
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=3.9e-37 Score=352.36 Aligned_cols=200 Identities=23% Similarity=0.307 Sum_probs=164.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|+|
T Consensus 287 ~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~ 351 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAY 351 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEE
T ss_pred EEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEE
Confidence 5899999999953 4799999999999999999999999999999999999999999986 236999
Q ss_pred EcCCCCC-CcccHHHHHHcC-CCC-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 538 VPQDTVL-FNDTIFHNIRYG-RLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g-~~~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
|||++.+ ++.|+.||+... .+. ..++.+.++++..++.+.. +..+ ..
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~----~~------------------- 401 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLY-------DREV----NE------------------- 401 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGT-------TSBG----GG-------------------
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhh-------cCCh----hh-------------------
Confidence 9999976 678999998653 111 1123333443333332211 1222 22
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCeEEEEeC--CE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLEN--GK 689 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~IiVld~--G~ 689 (728)
||||||||++|||||+.+|++|||||||++||..+.+.|.+.|+++. .++|+|+|||+++.+. .||||+||++ |+
T Consensus 402 LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~ 481 (538)
T 1yqt_A 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGK 481 (538)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcce
Confidence 99999999999999999999999999999999999999999999874 4899999999999986 4999999996 88
Q ss_pred EEEEcChHHHhhc
Q 004826 690 VIEQGSHDDLLTK 702 (728)
Q Consensus 690 Ive~Gth~eLl~~ 702 (728)
+++.|++++++..
T Consensus 482 ~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 482 YGRALPPMGMREG 494 (538)
T ss_dssp EEEECCCEEHHHH
T ss_pred EeecCCHHHHHhh
Confidence 9999999988753
No 50
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=5.5e-37 Score=354.77 Aligned_cols=200 Identities=23% Similarity=0.310 Sum_probs=168.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +..|+|
T Consensus 357 ~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~ 421 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAY 421 (607)
T ss_dssp EEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEE
T ss_pred EEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEE
Confidence 5899999999954 4699999999999999999999999999999999999999999986 247999
Q ss_pred EcCCCCC-CcccHHHHHHcC-CCC-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 538 VPQDTVL-FNDTIFHNIRYG-RLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g-~~~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
|||++.+ ++.|+.||+.+. .+. ..++.+.++++..++.++. +..++ .
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~----~------------------- 471 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-------DRNVE----D------------------- 471 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTT-------TSBGG----G-------------------
T ss_pred EecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHh-------cCChh----h-------------------
Confidence 9999876 678999998764 111 1233455555555554322 22222 2
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeC--CE
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN--GK 689 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~--G~ 689 (728)
||||||||++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||+|++|++ |+
T Consensus 472 LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~ 551 (607)
T 3bk7_A 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGR 551 (607)
T ss_dssp CCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTT
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcce
Confidence 99999999999999999999999999999999999999999999874 48999999999998865 999999996 88
Q ss_pred EEEEcChHHHhhc
Q 004826 690 VIEQGSHDDLLTK 702 (728)
Q Consensus 690 Ive~Gth~eLl~~ 702 (728)
+++.|++++++..
T Consensus 552 ~~~~g~p~~~~~~ 564 (607)
T 3bk7_A 552 HGRALPPMGMREG 564 (607)
T ss_dssp EEEECCCEEHHHH
T ss_pred EEecCCHHHHHhh
Confidence 9999999998753
No 51
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.5e-36 Score=346.85 Aligned_cols=200 Identities=22% Similarity=0.274 Sum_probs=166.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++| ..++|
T Consensus 269 ~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~ 334 (538)
T 3ozx_A 269 KMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSY 334 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEE
T ss_pred eEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEe
Confidence 5899999999954 568888999999999999999999999999999999999999999876 36899
Q ss_pred EcCCCCC-CcccHHHHHHcCCCCC---CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 538 VPQDTVL-FNDTIFHNIRYGRLSA---TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 538 V~Qd~~L-F~gTIreNI~~g~~~~---sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
+||++.. |..|++||+.+..... ..+.+.++++..++.++..+ . -..
T Consensus 335 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~----~~~------------------ 385 (538)
T 3ozx_A 335 KPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLES-------N----VND------------------ 385 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTS-------B----GGG------------------
T ss_pred echhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcC-------C----hhh------------------
Confidence 9999874 5789999998743221 22334555555555443222 1 122
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeC--C
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN--G 688 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~--G 688 (728)
||||||||++|||||+++|+||||||||++||+.+...|.+.|+++. .++|+|+|||+++.+.. ||||+||++ |
T Consensus 386 -LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~ 464 (538)
T 3ozx_A 386 -LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPE 464 (538)
T ss_dssp -CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999875 47999999999999875 999999986 6
Q ss_pred EEEEEcChHHHhh
Q 004826 689 KVIEQGSHDDLLT 701 (728)
Q Consensus 689 ~Ive~Gth~eLl~ 701 (728)
.+...|++.++..
T Consensus 465 ~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 465 KAGLATSPVTLKT 477 (538)
T ss_dssp TEEEECCCEEHHH
T ss_pred eeccCCChHHHHH
Confidence 7777888777654
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.2e-36 Score=363.30 Aligned_cols=204 Identities=22% Similarity=0.371 Sum_probs=151.3
Q ss_pred eEEEEEEEEEecC-CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 458 SIQFDNVHFSYLT-ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 458 ~I~f~nVsF~Y~~-~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
-|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|. ..|+
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 4999999999975 368999999999999999999999999999999999999999999999872 1488
Q ss_pred EEcCCCCC-----CcccHHHHHHcCCCC-------------CC-------------------------------------
Q 004826 537 VVPQDTVL-----FNDTIFHNIRYGRLS-------------AT------------------------------------- 561 (728)
Q Consensus 537 ~V~Qd~~L-----F~gTIreNI~~g~~~-------------~s------------------------------------- 561 (728)
||+|++.. ++.|+++|+.+.-.. .+
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 88887632 234666665431000 00
Q ss_pred ---------------------------HHHHH-------------HHHH--------HhccHHHHHhCCCcccchh--hc
Q 004826 562 ---------------------------EEEVY-------------DAAR--------RAAIHDTIMNFPAKYSTVV--GE 591 (728)
Q Consensus 562 ---------------------------deei~-------------~A~~--------~a~l~~~I~~LP~G~dT~v--gE 591 (728)
.+++. +++. ...+.+.++.+ |++... ..
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~~ 897 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSHS 897 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHHS
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcCC
Confidence 00000 0000 00111222222 222211 11
Q ss_pred cccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEecc
Q 004826 592 RGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671 (728)
Q Consensus 592 ~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH 671 (728)
... +||||||||++|||||+.+|+||||||||++||+++...+.+.|+++ +.|+|+|||
T Consensus 898 ~~~-------------------~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISH 956 (986)
T 2iw3_A 898 RIR-------------------GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITH 956 (986)
T ss_dssp CGG-------------------GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECS
T ss_pred Ccc-------------------ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEEC
Confidence 122 39999999999999999999999999999999999999999999875 579999999
Q ss_pred CchHHh-hcCeEEEEeCCEEEEEcC
Q 004826 672 RLTTAM-QCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 672 RLsti~-~aD~IiVld~G~Ive~Gt 695 (728)
+++.+. .||+|++|++|++++.|+
T Consensus 957 D~e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 957 SAEFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp CHHHHTTTCCEEECCBTTBCCC---
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999885 599999999999998875
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=340.55 Aligned_cols=200 Identities=27% Similarity=0.353 Sum_probs=166.8
Q ss_pred EEEEEEEecCCceeeeeeeEEEeCC-----cEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 461 FDNVHFSYLTERKILDGVSFVVPAG-----KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~G-----e~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
.++++|+|++..++++|+||++++| |++||+||||||||||+++|+|+.+|++|+. +. +..+
T Consensus 349 ~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i 415 (608)
T 3j16_B 349 SASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNV 415 (608)
T ss_dssp SSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCE
T ss_pred ccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcE
Confidence 3678899986667899999999999 7899999999999999999999999999962 21 3469
Q ss_pred EEEcCCCC-CCcccHHHHHHcCCC--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 536 GVVPQDTV-LFNDTIFHNIRYGRL--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 536 a~V~Qd~~-LF~gTIreNI~~g~~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
+|+||+.. .|..|++||+..... ....+...++++..++.+...+ .++
T Consensus 416 ~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-------~~~---------------------- 466 (608)
T 3j16_B 416 SMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQ-------EVQ---------------------- 466 (608)
T ss_dssp EEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSS-------BSS----------------------
T ss_pred EEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcC-------Chh----------------------
Confidence 99999975 578899999864321 2344555666666666543222 221
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchHHhh-cCeEEEEeC--
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTTAMQ-CDEIIVLEN-- 687 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~~-aD~IiVld~-- 687 (728)
+||||||||++|||||+.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||++..+.. ||||+||++
T Consensus 467 -~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~ 545 (608)
T 3j16_B 467 -HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIP 545 (608)
T ss_dssp -SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEET
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 299999999999999999999999999999999999999999998864 48999999999998865 999999997
Q ss_pred CEEEEEcChHHHhhcc
Q 004826 688 GKVIEQGSHDDLLTKA 703 (728)
Q Consensus 688 G~Ive~Gth~eLl~~~ 703 (728)
|+++..|++++++...
T Consensus 546 g~~~~~g~p~~~~~~~ 561 (608)
T 3j16_B 546 SKNAHARAPESLLTGC 561 (608)
T ss_dssp TTEEECCCCEEHHHHH
T ss_pred CeEEecCChHHHhhhh
Confidence 9999999999999753
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=8e-36 Score=345.06 Aligned_cols=193 Identities=21% Similarity=0.276 Sum_probs=156.7
Q ss_pred EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEE---------EECCEeCCCCCHHH--
Q 004826 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI---------RIDGQDICEVTLES-- 530 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I---------~idG~di~~i~~~~-- 530 (728)
+||+++|++...+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|.++.++....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~ 173 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN 173 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhh
Confidence 899999964435999999 999999999999999999999999999999999996 45676554321111
Q ss_pred HhcceEEEcCCCC----CCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 531 LRKSIGVVPQDTV----LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 531 lR~~Ia~V~Qd~~----LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
.+..+++++|+.. ++.+|++||+..... .+++.++++..++.+... ..++ .
T Consensus 174 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL~~~~~-------~~~~----~----------- 228 (607)
T 3bk7_A 174 GEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELELENVLD-------RELH----Q----------- 228 (607)
T ss_dssp TSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTCTTGGG-------SBGG----G-----------
T ss_pred hhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCCCchhC-------CChh----h-----------
Confidence 2346889998753 445799999976321 345667777777654322 2222 2
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cCeEEE
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++. .++|+|+|+|+++.+.. ||+|++
T Consensus 229 --------LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~v 300 (607)
T 3bk7_A 229 --------LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHV 300 (607)
T ss_dssp --------CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEE
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEE
Confidence 99999999999999999999999999999999999999999998874 48999999999998865 999999
Q ss_pred EeCC
Q 004826 685 LENG 688 (728)
Q Consensus 685 ld~G 688 (728)
|+++
T Consensus 301 l~~~ 304 (607)
T 3bk7_A 301 VYGE 304 (607)
T ss_dssp EESC
T ss_pred ECCC
Confidence 9865
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.5e-35 Score=348.94 Aligned_cols=209 Identities=25% Similarity=0.383 Sum_probs=153.6
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh---------------------cCCCCCCCEEEECCEeCCCCCHH
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF---------------------RSFDTHSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~---------------------gly~p~~G~I~idG~di~~i~~~ 529 (728)
..++|+||||+|++||++||+||||||||||+++|+ +-+.+.+|.|.++|.++...+..
T Consensus 334 ~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 334 REHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTC
T ss_pred cccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCc
Confidence 346899999999999999999999999999998764 12334567899999988765422
Q ss_pred HHhc-----------------------------------------ceEEEcCCCCCC-----------------------
Q 004826 530 SLRK-----------------------------------------SIGVVPQDTVLF----------------------- 545 (728)
Q Consensus 530 ~lR~-----------------------------------------~Ia~V~Qd~~LF----------------------- 545 (728)
..+. ..++++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1111 123333333222
Q ss_pred ----------cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 546 ----------NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 546 ----------~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
.-|++||+.+.......++..++++..++. + ...+..... |
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~---------~-~~~~~~~~~-------------------L 544 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDVGLG---------Y-MKLGQPATT-------------------L 544 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTCHHHHHHHHHHHHTTCT---------T-SBTTCCGGG-------------------C
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHhhhHHHHHHHHHHcCCc---------h-hhccCCchh-------------------C
Confidence 358999998875322223333333333321 1 112333334 9
Q ss_pred ChhHHHHHHHHHHhccCC---CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------
Q 004826 616 SGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ 685 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------ 685 (728)
|||||||++|||||+.+| +|||||||||+||+.+.+.|.+.|+++. +++|+|+|||+++.++.||+|+||
T Consensus 545 SgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~ 624 (670)
T 3ux8_A 545 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGD 624 (670)
T ss_dssp CHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGG
T ss_pred CHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCC
Confidence 999999999999999887 4999999999999999999999998875 489999999999999999999999
Q ss_pred eCCEEEEEcChHHHhhccchHHH
Q 004826 686 ENGKVIEQGSHDDLLTKAGRYAQ 708 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~g~Y~~ 708 (728)
++|+|++.|+++|+.+....|..
T Consensus 625 ~~G~i~~~g~~~~~~~~~~~~~~ 647 (670)
T 3ux8_A 625 RGGQIVAVGTPEEVAEVKESHTG 647 (670)
T ss_dssp GCCEEEEEECHHHHHTCTTCHHH
T ss_pred CCCEEEEecCHHHHHhCCccHHH
Confidence 89999999999999876554533
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-35 Score=340.57 Aligned_cols=196 Identities=23% Similarity=0.304 Sum_probs=154.9
Q ss_pred EEE-EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEE---------EECCEeCCCCCH
Q 004826 459 IQF-DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI---------RIDGQDICEVTL 528 (728)
Q Consensus 459 I~f-~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I---------~idG~di~~i~~ 528 (728)
.++ +||+++|++..++|+|+| +|++||++|||||||||||||+|+|+|+++|++|++ .++|.++.+...
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 589999964336999999 999999999999999999999999999999999996 456655443211
Q ss_pred HH--HhcceEEEcCCCCC----CcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 529 ES--LRKSIGVVPQDTVL----FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 529 ~~--lR~~Ia~V~Qd~~L----F~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
.. .+..+++++|+..+ +.+|++||+..... .+++.++++..++.+. .+..+++
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~lgl~~~-------~~~~~~~----------- 158 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKALELENV-------LEREIQH----------- 158 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHTTCTTT-------TTSBGGG-----------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHcCCChh-------hhCChhh-----------
Confidence 11 23468999997654 34699999865321 2446677777776432 2222222
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh-cC
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ-CD 680 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~-aD 680 (728)
||||||||++|||||+.+|+|||||||||+||+.+.+.+.+.|+++. .++|+|+|||++..+.. ||
T Consensus 159 ------------LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~d 226 (538)
T 1yqt_A 159 ------------LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSD 226 (538)
T ss_dssp ------------CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred ------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999999999999999999999999999999999999998874 48999999999998865 99
Q ss_pred eEEEEeCC
Q 004826 681 EIIVLENG 688 (728)
Q Consensus 681 ~IiVld~G 688 (728)
+|++|++|
T Consensus 227 ri~vl~~~ 234 (538)
T 1yqt_A 227 IIHVVYGE 234 (538)
T ss_dssp EEEEEEEE
T ss_pred EEEEEcCc
Confidence 99999864
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.4e-34 Score=338.50 Aligned_cols=198 Identities=27% Similarity=0.350 Sum_probs=164.7
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
..|...|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +..++
T Consensus 434 ~~L~~~~ls~~yg-~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~ 498 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTV 498 (986)
T ss_dssp CEEEEEEEEEEET-TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEE
T ss_pred ceeEEeeEEEEEC-CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEE
Confidence 4688889999995 5689999999999999999999999999999999996 554 5654321 12478
Q ss_pred EEcCCC-CC-CcccHHHHHHcCCCCCCHHHHHHHHHHhccH-HHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 537 VVPQDT-VL-FNDTIFHNIRYGRLSATEEEVYDAARRAAIH-DTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 537 ~V~Qd~-~L-F~gTIreNI~~g~~~~sdeei~~A~~~a~l~-~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
|++|++ .+ ..-|+.||+.+..... ++++.++++..++. +...+. ++ .
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~~-------~~----~------------------ 548 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAMP-------IS----A------------------ 548 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHSB-------GG----G------------------
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcCC-------cc----c------------------
Confidence 999985 34 4569999998621112 67788888888873 433321 22 2
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEEEeCCEEE-
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIVLENGKVI- 691 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiVld~G~Iv- 691 (728)
||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|++ .++|+|+|||++..+.. ||+|++|++|+++
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~ 625 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRK 625 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeec
Confidence 999999999999999999999999999999999999999999988 68999999999999865 9999999999997
Q ss_pred EEcChHHHhhc
Q 004826 692 EQGSHDDLLTK 702 (728)
Q Consensus 692 e~Gth~eLl~~ 702 (728)
..|+++|+++.
T Consensus 626 ~~G~~~e~~~~ 636 (986)
T 2iw3_A 626 YKGNFTEFVKK 636 (986)
T ss_dssp EESCHHHHHHH
T ss_pred CCCCHHHHHhh
Confidence 58999998754
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.6e-35 Score=342.38 Aligned_cols=204 Identities=25% Similarity=0.374 Sum_probs=137.0
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHH---------------------HHHhcCCCCC-------CCEEEECCEe
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL---------------------RLLFRSFDTH-------SGSIRIDGQD 522 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~---------------------~LL~gly~p~-------~G~I~idG~d 522 (728)
..++|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45689999999999999999999999999998 8999999998 5566677765
Q ss_pred CCCCCHHHHhcceEEEcCCCCCC--------------------cccHHHHHHcCCC-CCCH--HHH-----HHHHHHhcc
Q 004826 523 ICEVTLESLRKSIGVVPQDTVLF--------------------NDTIFHNIRYGRL-SATE--EEV-----YDAARRAAI 574 (728)
Q Consensus 523 i~~i~~~~lR~~Ia~V~Qd~~LF--------------------~gTIreNI~~g~~-~~sd--eei-----~~A~~~a~l 574 (728)
+.. ..|+.+++|+|.+.++ .-|++||+.+... ...+ .+. .++.+..
T Consensus 110 ~~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 183 (670)
T 3ux8_A 110 TSR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-- 183 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHH--
T ss_pred hhc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH--
Confidence 543 2355677777765443 4589999987531 1111 111 1111111
Q ss_pred HHHHHhCCCc---ccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCC--EEEEeCcCcCCCHHH
Q 004826 575 HDTIMNFPAK---YSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP--ILLCDEATSALDSTT 649 (728)
Q Consensus 575 ~~~I~~LP~G---~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~--ILILDEaTSaLD~~t 649 (728)
+.++.+.-+ .|..++ . ||||||||++|||||+.+|+ +||||||||+||+.+
T Consensus 184 -~~l~~~gL~~~~~~~~~~----~-------------------LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~ 239 (670)
T 3ux8_A 184 -GFLQNVGLDYLTLSRSAG----T-------------------LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRD 239 (670)
T ss_dssp -HHHHHTTCTTCCTTCBGG----G-------------------SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGG
T ss_pred -HHHHHcCCchhhhcCCcc----c-------------------CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHH
Confidence 112222111 122222 2 99999999999999999998 999999999999999
Q ss_pred HHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------eCCEEEEEcChHHHhhccc
Q 004826 650 EAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKAG 704 (728)
Q Consensus 650 E~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------d~G~Ive~Gth~eLl~~~g 704 (728)
...+.+.|+++. +++|+|+|||+++.+..||+|++| ++|++++.|+++|+.+...
T Consensus 240 ~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 240 NDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999999998874 579999999999999999999999 8999999999999987654
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.1e-34 Score=342.46 Aligned_cols=218 Identities=25% Similarity=0.421 Sum_probs=165.8
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHH---------HHHhcCCC------CCCC------EE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTIL---------RLLFRSFD------THSG------SI 516 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~---------~LL~gly~------p~~G------~I 516 (728)
.+++++++ .+.|+||||+|++|+++||+|+||||||||+ +++.+... +.+| .|
T Consensus 589 ~l~v~~~~------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i 662 (916)
T 3pih_A 589 SLKIKGVR------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMI 662 (916)
T ss_dssp EEEEEEEC------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEE
T ss_pred eEEEeeec------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceE
Confidence 45555543 3579999999999999999999999999997 44444443 3333 35
Q ss_pred EECCEeCCCCCH----------HHHh-------------------------------cceEEEcCCCCCCc---------
Q 004826 517 RIDGQDICEVTL----------ESLR-------------------------------KSIGVVPQDTVLFN--------- 546 (728)
Q Consensus 517 ~idG~di~~i~~----------~~lR-------------------------------~~Ia~V~Qd~~LF~--------- 546 (728)
.+|+.++..... +.+| +..|+++|+..++.
T Consensus 663 ~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c 742 (916)
T 3pih_A 663 AIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVC 742 (916)
T ss_dssp EECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTT
T ss_pred eeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccc
Confidence 666665543221 1111 23577777766543
Q ss_pred ------------------------ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 547 ------------------------DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 547 ------------------------gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
.|+.||+.+.......++..++++..++ || ..+|+.+..
T Consensus 743 ~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~vGL---------~~-~~lgq~~~~------- 805 (916)
T 3pih_A 743 KGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL---------GY-VKLGQPATT------- 805 (916)
T ss_dssp TTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHTTG---------GG-SBTTCCSTT-------
T ss_pred cccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHcCC---------ch-hhccCCccC-------
Confidence 4778888777543333445555555554 23 235666666
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhh
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQ 678 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~ 678 (728)
|||||||||+|||||+++| +||||||||++||+.+++.|++.|+++. +|+|+|+|+|+++.++.
T Consensus 806 ------------LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ 873 (916)
T 3pih_A 806 ------------LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKN 873 (916)
T ss_dssp ------------CCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred ------------CCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 9999999999999999876 6999999999999999999999999875 58999999999999999
Q ss_pred cCeEEEE------eCCEEEEEcChHHHhhccchHHHHH
Q 004826 679 CDEIIVL------ENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 679 aD~IiVl------d~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
||+|++| ++|+||++|+|+|+++..+.|..-+
T Consensus 874 ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~~syt~~~ 911 (916)
T 3pih_A 874 ADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRF 911 (916)
T ss_dssp CSEEEEEESSSGGGCCEEEEEESHHHHHSCTTCHHHHH
T ss_pred CCEEEEecCCCCCCCCEEEEEcCHHHHHhCCchHHHHH
Confidence 9999999 8999999999999999877775544
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-33 Score=322.46 Aligned_cols=196 Identities=21% Similarity=0.288 Sum_probs=154.5
Q ss_pred EEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEE-----------EECCEeCCCCCHHHH
Q 004826 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-----------RIDGQDICEVTLESL 531 (728)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I-----------~idG~di~~i~~~~l 531 (728)
|++++|.+....|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++.++....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 57899986667788887 699999999999999999999999999999999998 345544444333444
Q ss_pred hcceE--EEcCCCCC----Cc---ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHH
Q 004826 532 RKSIG--VVPQDTVL----FN---DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYI 602 (728)
Q Consensus 532 R~~Ia--~V~Qd~~L----F~---gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~ 602 (728)
++.+. +.+|.... +. .++.+++..... ..++++.++++..++.+...+.| + .
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~-~~~~~~~~~l~~~gl~~~~~~~~-------~----~------- 221 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME-KSPEDVKRYIKILQLENVLKRDI-------E----K------- 221 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC-SCHHHHHHHHHHHTCTGGGGSCT-------T----T-------
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh-hHHHHHHHHHHHcCCcchhCCCh-------H----H-------
Confidence 44443 33443221 11 267777765432 35677888888888766543322 1 2
Q ss_pred hhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhh-cC
Q 004826 603 QKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQ-CD 680 (728)
Q Consensus 603 ~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~-aD 680 (728)
||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|+|+++.+.. ||
T Consensus 222 ------------LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~d 289 (608)
T 3j16_B 222 ------------LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSD 289 (608)
T ss_dssp ------------CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCS
T ss_pred ------------CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 999999999999999999999999999999999999999999998754 7999999999998876 99
Q ss_pred eEEEEeCCEE
Q 004826 681 EIIVLENGKV 690 (728)
Q Consensus 681 ~IiVld~G~I 690 (728)
+|+||++|..
T Consensus 290 rv~vl~~~~~ 299 (608)
T 3j16_B 290 FVCIIYGVPS 299 (608)
T ss_dssp EEEEEESCTT
T ss_pred EEEEEeCCcc
Confidence 9999998754
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.98 E-value=2.4e-33 Score=320.28 Aligned_cols=193 Identities=20% Similarity=0.269 Sum_probs=152.5
Q ss_pred EEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEE-----------EECCEeCCCCCHHHH
Q 004826 463 NVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-----------RIDGQDICEVTLESL 531 (728)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I-----------~idG~di~~i~~~~l 531 (728)
+++.+|..+.-.|.++.. .++||.+|||||||||||||+|+|+|+++|++|+| .++|.++..+.....
T Consensus 4 ~~~~~~~~~~f~l~~l~~-~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~ 82 (538)
T 3ozx_A 4 EVIHRYKVNGFKLFGLPT-PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELY 82 (538)
T ss_dssp CEEEESSTTSCEEECCCC-CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHH
T ss_pred CCceecCCCceeecCCCC-CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHh
Confidence 567789766555555543 56999999999999999999999999999999999 678876654322222
Q ss_pred h------cceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhh
Q 004826 532 R------KSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKK 605 (728)
Q Consensus 532 R------~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~ 605 (728)
. ..+.+++|.+.++.+|+++++..... .+.+.++++..++.+.. |..+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l~l~~~~-------~~~~~~-------------- 138 (538)
T 3ozx_A 83 SNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELLNMTNLW-------NKDANI-------------- 138 (538)
T ss_dssp TTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHTTCGGGT-------TSBGGG--------------
T ss_pred hcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHcCCchhh-------cCChhh--------------
Confidence 2 23445566667788999998864322 23456677777765432 222322
Q ss_pred hccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhh-cCeEEE
Q 004826 606 LERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQ-CDEIIV 684 (728)
Q Consensus 606 ~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~-aD~IiV 684 (728)
||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+++|+|+|+|+++.+.. ||+|+|
T Consensus 139 ---------LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~v 209 (538)
T 3ozx_A 139 ---------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHI 209 (538)
T ss_dssp ---------CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEE
T ss_pred ---------CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEE
Confidence 9999999999999999999999999999999999999999999998889999999999998765 999999
Q ss_pred EeCCE
Q 004826 685 LENGK 689 (728)
Q Consensus 685 ld~G~ 689 (728)
|++|.
T Consensus 210 l~~~~ 214 (538)
T 3ozx_A 210 IYGES 214 (538)
T ss_dssp EEEET
T ss_pred ecCCc
Confidence 98754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=3.5e-32 Score=322.37 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=157.4
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHH-HhcCC-------CC-----------------
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRL-LFRSF-------DT----------------- 511 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~L-L~gly-------~p----------------- 511 (728)
..|+++|+++. +|+||||+|++||++||+|+||||||||++. |+|+. .|
T Consensus 501 ~~L~v~~l~~~------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 501 GWLELNGVTRN------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp CEEEEEEEEET------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred ceEEEEeeeec------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 46999999862 6999999999999999999999999999996 66443 22
Q ss_pred -CCC-------EEEECCEeCCCCCH----------HHHhcceEEEcC-------------------------------CC
Q 004826 512 -HSG-------SIRIDGQDICEVTL----------ESLRKSIGVVPQ-------------------------------DT 542 (728)
Q Consensus 512 -~~G-------~I~idG~di~~i~~----------~~lR~~Ia~V~Q-------------------------------d~ 542 (728)
.+| .|.+||.++..-+. +.+|+.++++|+ |-
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 466 78999988864332 344443333321 11
Q ss_pred CCC-------------------------cccHHHHHH--------cCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchh
Q 004826 543 VLF-------------------------NDTIFHNIR--------YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVV 589 (728)
Q Consensus 543 ~LF-------------------------~gTIreNI~--------~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~v 589 (728)
.++ ..||.||+. +.......+++ .+.++.+--++. .+
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~---------~~~L~~~gL~~~-~l 724 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRA---------LDTLREVGLGYL-RL 724 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHH---------HHHHHHTTCTTS-BT
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHH---------HHHHHHcCCCcc-cc
Confidence 111 125555553 32211001112 334444422221 23
Q ss_pred hccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCe
Q 004826 590 GERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKA---PPILLCDEATSALDSTTEAEILNALKSLA-NNRT 665 (728)
Q Consensus 590 gE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~---p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~T 665 (728)
+..... |||||||||+|||||+++ |+||||||||++||..+.+.|.+.|+++. .|+|
T Consensus 725 ~~~~~~-------------------LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~t 785 (842)
T 2vf7_A 725 GQPATE-------------------LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNT 785 (842)
T ss_dssp TCCGGG-------------------CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred cCCccc-------------------CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCE
Confidence 444444 999999999999999997 69999999999999999999999998874 5899
Q ss_pred EEEeccCchHHhhcCeEEEE------eCCEEEEEcChHHHhhccchH
Q 004826 666 SIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTKAGRY 706 (728)
Q Consensus 666 vIvIaHRLsti~~aD~IiVl------d~G~Ive~Gth~eLl~~~g~Y 706 (728)
+|+|+|+++.++.||+|++| ++|+|++.|+++|+++....|
T Consensus 786 VIvisHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~~~~ 832 (842)
T 2vf7_A 786 VIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832 (842)
T ss_dssp EEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCTTCS
T ss_pred EEEEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCchhH
Confidence 99999999999999999999 699999999999998765443
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=1e-31 Score=298.37 Aligned_cols=217 Identities=19% Similarity=0.274 Sum_probs=159.2
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC---------------------------
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD--------------------------- 510 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~--------------------------- 510 (728)
.++++|+ .+++++||++++| +++|||+||||||||+++|.++..
T Consensus 42 ~L~i~nf--------~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~ 112 (415)
T 4aby_A 42 RLEIRNL--------ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDES 112 (415)
T ss_dssp EEEEEEE--------TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC------
T ss_pred eehhccc--------cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCC
Confidence 4666653 4789999999999 999999999999999999966653
Q ss_pred -----------CCCCEEEECCEeCCCCCHHHHhcc-eEEEcCCCCCCcccHHHHHHcCCCCCCH----------------
Q 004826 511 -----------THSGSIRIDGQDICEVTLESLRKS-IGVVPQDTVLFNDTIFHNIRYGRLSATE---------------- 562 (728)
Q Consensus 511 -----------p~~G~I~idG~di~~i~~~~lR~~-Ia~V~Qd~~LF~gTIreNI~~g~~~~sd---------------- 562 (728)
+.+|++++||.+++..++.++++. +++++|+..++-.+-.++..+-+.....
T Consensus 113 ~~~~l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~ 192 (415)
T 4aby_A 113 EADSASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAV 192 (415)
T ss_dssp --CEEEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 457899999999987778888877 8999999998877777666554332211
Q ss_pred ----------------------------HHHHHHHHH-------------hccHHHHHhC--CC----------------
Q 004826 563 ----------------------------EEVYDAARR-------------AAIHDTIMNF--PA---------------- 583 (728)
Q Consensus 563 ----------------------------eei~~A~~~-------------a~l~~~I~~L--P~---------------- 583 (728)
+++.+.+.. ..+.+.+..+ |+
T Consensus 193 ~~~~~l~~~~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 272 (415)
T 4aby_A 193 SRLERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAY 272 (415)
T ss_dssp HHHHHC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETT
T ss_pred HHHHHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCC
Confidence 000000000 0111222222 11
Q ss_pred cccc---hhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCC--CEEEEeCcCcCCCHHHHHHHHHHHH
Q 004826 584 KYST---VVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALK 658 (728)
Q Consensus 584 G~dT---~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p--~ILILDEaTSaLD~~tE~~I~~~L~ 658 (728)
|++. .++.++.. ...|...-||||||||++|||+|+.+| ++||||||||+||+.+.+.|.+.|+
T Consensus 273 g~~~~~~~~~~~~~~-----------~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~ 341 (415)
T 4aby_A 273 GLSDVLLRFSANPGE-----------ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLS 341 (415)
T ss_dssp EEEEEEEEEESSSSC-----------CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred CCceEEEEEEcCCCC-----------cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 1111 11111100 000111116999999999999999999 9999999999999999999999999
Q ss_pred HHcCCCeEEEeccCchHHhhcCeEEEE----eCCEEEEEc
Q 004826 659 SLANNRTSIFIAHRLTTAMQCDEIIVL----ENGKVIEQG 694 (728)
Q Consensus 659 ~l~~~~TvIvIaHRLsti~~aD~IiVl----d~G~Ive~G 694 (728)
++.+++|+|+|||+++.+..||+|+|| ++|+++...
T Consensus 342 ~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 342 RLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp HHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETTEEEEEE
T ss_pred HHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCCceEEEE
Confidence 988899999999999999999999999 999998654
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1e-31 Score=318.42 Aligned_cols=217 Identities=26% Similarity=0.382 Sum_probs=159.4
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh-cC----C---CCCCC-------------EE
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-RS----F---DTHSG-------------SI 516 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~-gl----y---~p~~G-------------~I 516 (728)
.++++|++. .+|+||||+|++||++||+|+||||||||++.|+ |. + .+..| .|
T Consensus 629 ~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 629 WLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp EEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred EEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 588998862 3699999999999999999999999999999854 21 1 12333 48
Q ss_pred EECCEeCCCCC---HH-------HHh---------cceEEEcCCCCC---------------------C-----------
Q 004826 517 RIDGQDICEVT---LE-------SLR---------KSIGVVPQDTVL---------------------F----------- 545 (728)
Q Consensus 517 ~idG~di~~i~---~~-------~lR---------~~Ia~V~Qd~~L---------------------F----------- 545 (728)
.+||.++..-. +. ..| +.+||++|...+ |
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 89998875321 11 122 346888885321 0
Q ss_pred -----------------------cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccc-hhhccccccchhHH
Q 004826 546 -----------------------NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKGRSLLY 601 (728)
Q Consensus 546 -----------------------~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT-~vgE~G~~~~~~~~ 601 (728)
+-|+.||+.+.......+++. +.++.+ |++. .++.....
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~---------~~L~~~--gL~~~~l~~~~~~------ 845 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKL---------ETLYDV--GLGYMKLGQPATT------ 845 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHH---------HHHHHT--TCSSSBTTCCGGG------
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHH---------HHHHHc--CCCcccccCchhh------
Confidence 125666666553211111122 333443 2332 34444444
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHh
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAM 677 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~ 677 (728)
||||||||++|||||+++| +||||||||++||+.+.+.+.+.|+++. +|+|+|+|+|++..++
T Consensus 846 -------------LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~ 912 (972)
T 2r6f_A 846 -------------LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIK 912 (972)
T ss_dssp -------------CCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT
T ss_pred -------------CCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHH
Confidence 9999999999999999875 9999999999999999999999998875 5899999999999999
Q ss_pred hcCeEEEE------eCCEEEEEcChHHHhhccchHHHHH
Q 004826 678 QCDEIIVL------ENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 678 ~aD~IiVl------d~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
.||+|++| ++|+|++.|+++++.+....|...|
T Consensus 913 ~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~~~~t~~~ 951 (972)
T 2r6f_A 913 TADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRY 951 (972)
T ss_dssp TCSEEEEECSSSTTSCCSEEEEESHHHHHTCTTCHHHHH
T ss_pred hCCEEEEEcCCCCCCCCEEEEecCHHHHHhCchhHHHHH
Confidence 99999999 7999999999999998665554443
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-35 Score=330.82 Aligned_cols=191 Identities=17% Similarity=0.115 Sum_probs=154.7
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC-E-EEECCEeCCCCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-S-IRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G-~-I~idG~di~~i~~~~lR~~I 535 (728)
-|+++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| +.|+.+
T Consensus 118 mi~~~nl~~~y~-------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg---------~~~~~i 181 (460)
T 2npi_A 118 MKYIYNLHFMLE-------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL---------DPQQPI 181 (460)
T ss_dssp HHHHHHHHHHHH-------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC---------CTTSCS
T ss_pred hhhhhhhhehhh-------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC---------CccCCe
Confidence 478888888884 79999999999999999999999999999999999999 9 99998 247899
Q ss_pred EEEcCCCCCCc----ccHHHHHHcCCCC---C-CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhc
Q 004826 536 GVVPQDTVLFN----DTIFHNIRYGRLS---A-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLE 607 (728)
Q Consensus 536 a~V~Qd~~LF~----gTIreNI~~g~~~---~-sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~ 607 (728)
++|||++.+|. .|++||+ ++... . .++.+.++++.. |++.... ...
T Consensus 182 ~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~------------ 235 (460)
T 2npi_A 182 FTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKD------------ 235 (460)
T ss_dssp SSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHH------------
T ss_pred eeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhh------------
Confidence 99999996654 4899999 76421 1 111122222222 3433322 333
Q ss_pred cCCCCCCCChhHHHHHHHHHH--hccCCCE----EEEeC-cCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch------
Q 004826 608 RRPLFVSLSGGEKQRVALARA--FLKAPPI----LLCDE-ATSALDSTTEAEILNALKSLANNRTSIFIAHRLT------ 674 (728)
Q Consensus 608 ~~~~~~~LSGGQrQRIaIARA--Ll~~p~I----LILDE-aTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs------ 674 (728)
||||||||++|||| |+.+|++ ||||| |||+||+. .+.+.+.++++ ++|+|+|+|+.+
T Consensus 236 -------LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~ 305 (460)
T 2npi_A 236 -------LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEK 305 (460)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHH
T ss_pred -------hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHH
Confidence 99999999999999 9999999 99999 99999999 66777777663 789999999987
Q ss_pred HH-hhcCe-----EEEEe-CCEEEEEcChHHHhh
Q 004826 675 TA-MQCDE-----IIVLE-NGKVIEQGSHDDLLT 701 (728)
Q Consensus 675 ti-~~aD~-----IiVld-~G~Ive~Gth~eLl~ 701 (728)
.+ +.||+ |++|+ +|+|+ .|+++++.+
T Consensus 306 ~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 306 VKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp HHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred HHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 43 56999 99999 99999 999998864
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=1.4e-30 Score=309.90 Aligned_cols=219 Identities=27% Similarity=0.391 Sum_probs=158.5
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh-----cCCC---CCCCE-------------
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-----RSFD---THSGS------------- 515 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~-----gly~---p~~G~------------- 515 (728)
..++++|++. .+|+||||+|++|+++||+|+||||||||+++|+ +.+. +..|.
T Consensus 646 ~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 646 RQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp SEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred ceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 3699999862 3699999999999999999999999999999853 2222 23443
Q ss_pred EEECCEeCCCC---CHH-------HHh---------cceEEEcCCCCC---------------------C----------
Q 004826 516 IRIDGQDICEV---TLE-------SLR---------KSIGVVPQDTVL---------------------F---------- 545 (728)
Q Consensus 516 I~idG~di~~i---~~~-------~lR---------~~Ia~V~Qd~~L---------------------F---------- 545 (728)
|.+|+.++..- ++. ..| +.++|++|...+ |
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 55666666322 111 122 346777775321 0
Q ss_pred ------------------------cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccc-hhhccccccchhH
Q 004826 546 ------------------------NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYST-VVGERGLKGRSLL 600 (728)
Q Consensus 546 ------------------------~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT-~vgE~G~~~~~~~ 600 (728)
+-|+.||+.+.......+++. +.++.+ |+.. .++.....
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~~~~~~~---------~~L~~l--gL~~~~l~~~~~~----- 863 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYL---------RTLVDV--GLGYVRLGQPAPT----- 863 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCHHHHHHH---------HHHHHT--TGGGSBTTCCGGG-----
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcchHHHHHH---------HHHHHc--CCCcccccCcccc-----
Confidence 124555665543211111122 334443 3333 34555545
Q ss_pred HHhhhhccCCCCCCCChhHHHHHHHHHHhccCC---CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH
Q 004826 601 YIQKKLERRPLFVSLSGGEKQRVALARAFLKAP---PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA 676 (728)
Q Consensus 601 ~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p---~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti 676 (728)
|||||||||+|||||+++| +||||||||++||+.+.+.|.+.|+++. .|+|+|+|+|++..+
T Consensus 864 --------------LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i 929 (993)
T 2ygr_A 864 --------------LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVI 929 (993)
T ss_dssp --------------SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred --------------CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 9999999999999999875 9999999999999999999999998874 589999999999999
Q ss_pred hhcCeEEEE------eCCEEEEEcChHHHhhccchHHHHHH
Q 004826 677 MQCDEIIVL------ENGKVIEQGSHDDLLTKAGRYAQLWG 711 (728)
Q Consensus 677 ~~aD~IiVl------d~G~Ive~Gth~eLl~~~g~Y~~l~~ 711 (728)
+.||+|++| ++|+|++.|+++++.+....|...|-
T Consensus 930 ~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~~~~~t~~~l 970 (993)
T 2ygr_A 930 KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPASYTGKFL 970 (993)
T ss_dssp TTCSEEEEEESSSTTSCSEEEEEECHHHHHHCTTCHHHHHH
T ss_pred HhCCEEEEECCCcCCCCCEEEEecCHHHHHhCCHHHHHHHH
Confidence 999999999 69999999999999887666655443
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=4.4e-29 Score=268.48 Aligned_cols=219 Identities=21% Similarity=0.240 Sum_probs=152.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC-----------------------------
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS----------------------------- 508 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl----------------------------- 508 (728)
.|+++| -.+|. ++++|++.|| .++|+|+||||||||++.|..+
T Consensus 5 ~L~i~n-fr~~~------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~ 76 (322)
T 1e69_A 5 KLYLKG-FKSFG------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAG 76 (322)
T ss_dssp EEEEES-BTTBC------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCS
T ss_pred EEEEeC-ceeec------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCc
Confidence 477777 12342 2578889999 9999999999999999999843
Q ss_pred ---------------------CCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCC-cccHHHHHHcCCCCC------
Q 004826 509 ---------------------FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSA------ 560 (728)
Q Consensus 509 ---------------------y~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF-~gTIreNI~~g~~~~------ 560 (728)
+.+.+|.+++||.+++..+...+...++++||+..++ .|+|.+|+.+. |..
T Consensus 77 ~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld 155 (322)
T 1e69_A 77 SAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESS 155 (322)
T ss_dssp EEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred eEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHH
Confidence 2445679999999987666777888899999998766 89999998654 210
Q ss_pred ----------CHHHHHHHHHHh------------cc-HHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 561 ----------TEEEVYDAARRA------------AI-HDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 561 ----------sdeei~~A~~~a------------~l-~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
+.+++.+..... .+ .+....++.|+++.+++.+.. +. ....|||
T Consensus 156 ~~~~~~~~~~~y~rv~e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~-----------~~--~~~~lS~ 222 (322)
T 1e69_A 156 KHPTSLVPRGSYQRVNESFNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRR-----------DQ--KLSLLSG 222 (322)
T ss_dssp -----------CHHHHHHHHHHHHHHHTSCEEEC--------------CCEEECTTSC-----------CC--BGGGSCH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccc-----------cC--chhhCCH
Confidence 001122221110 00 011134566777655432211 00 1124999
Q ss_pred hHHHHHHHHHHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeE--EEEeCCEE-
Q 004826 618 GEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEI--IVLENGKV- 690 (728)
Q Consensus 618 GQrQRIaIARALl----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~I--iVld~G~I- 690 (728)
|||||++|||||. ++|++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+...++.||++ ++|++|+.
T Consensus 223 Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 223 GEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 9999999999996 7899999999999999999999999999987789999999999888999987 88888864
Q ss_pred EEEcChHH
Q 004826 691 IEQGSHDD 698 (728)
Q Consensus 691 ve~Gth~e 698 (728)
+...+-+|
T Consensus 303 ~~~~~~~~ 310 (322)
T 1e69_A 303 IVPVEVEK 310 (322)
T ss_dssp EEECCC--
T ss_pred EEEEEcch
Confidence 44444444
No 68
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.95 E-value=6.2e-32 Score=291.36 Aligned_cols=206 Identities=12% Similarity=0.156 Sum_probs=155.1
Q ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCCCCC-CCCCCceEE---------E
Q 004826 393 EMTVGDLVMVNGLLFQLSLPLNFLGS-VYRETVQSLVDMKSMFQLLEEKADIQDRDNAMP-LNLKGGSIQ---------F 461 (728)
Q Consensus 393 ~lt~G~l~a~~~~~~~l~~pl~~l~~-~~~~~~~a~~s~~rl~~ll~~~~~~~~~~~~~~-~~~~~g~I~---------f 461 (728)
.+|.|++.+++.++..+..| .+.. ....++.+..+.+|+.++++.|.. .+...... .....+.++ |
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~-~~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTV-NDETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSS-STTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCcc-CCCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 69999999999888777665 2333 223333344456777777754331 11100000 011123566 8
Q ss_pred EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCC
Q 004826 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd 541 (728)
+||+| | +++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+|+.+++++|
T Consensus 152 ~~v~f-y---~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g- 224 (330)
T 2pt7_A 152 NLLDN-K---EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG- 224 (330)
T ss_dssp TTSTT-H---HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB-
T ss_pred Cchhh-H---HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC-
Confidence 88888 8 579999999999999999999999999999999999999999999999975 4444445666776640
Q ss_pred CCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHH
Q 004826 542 TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQ 621 (728)
Q Consensus 542 ~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQ 621 (728)
|||+|
T Consensus 225 ---------------------------------------------------------------------------gg~~~ 229 (330)
T 2pt7_A 225 ---------------------------------------------------------------------------GNITS 229 (330)
T ss_dssp ---------------------------------------------------------------------------TTBCH
T ss_pred ---------------------------------------------------------------------------CChhH
Confidence 47889
Q ss_pred HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCC-eEEEeccCchHHhhcCeEEEEeCCEE
Q 004826 622 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNR-TSIFIAHRLTTAMQCDEIIVLENGKV 690 (728)
Q Consensus 622 RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~-TvIvIaHRLsti~~aD~IiVld~G~I 690 (728)
|++|||||.++|++|||||||+. .+.+.|+.+..++ |+|+++|++++...||||++|++|+.
T Consensus 230 r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 230 ADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 99999999999999999999992 2455666665665 79999999999999999999998864
No 69
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.94 E-value=1.5e-31 Score=271.92 Aligned_cols=166 Identities=17% Similarity=0.207 Sum_probs=124.5
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH-HHHhcceEEEcCCCCCC------
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL-ESLRKSIGVVPQDTVLF------ 545 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~-~~lR~~Ia~V~Qd~~LF------ 545 (728)
.-|+||||+|++|+++|||||||||||||+++|+|++ | |+|.+ |+++...+. ...++.++|++|++.+|
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 6 99999 887655432 34577899999987555
Q ss_pred -----cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHH
Q 004826 546 -----NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEK 620 (728)
Q Consensus 546 -----~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQr 620 (728)
.+++.+| .+|.+ ++++.++++.... ..++ .. ||||||
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~~~~------------~il~---~~-------------------lsggq~ 128 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQNKI------------CLFE---MN-------------------INGVKQ 128 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHTTCE------------EEEE---EC-------------------HHHHHH
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhCCCc------------EEEE---ec-------------------HHHHHH
Confidence 4455566 45543 4556565554321 1111 34 999999
Q ss_pred HHHHH-----HHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeC
Q 004826 621 QRVAL-----ARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 621 QRIaI-----ARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
||++| ||+++++|++++|||||+++|.++|+.|++.+.+..+++| ++| +..||.|+|+++
T Consensus 129 qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 129 LKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 99999 9999999999999999999999999999999998877777 788 588999998764
No 70
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=2e-29 Score=254.17 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=105.3
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHH
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF 550 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr 550 (728)
++++|+|| ++||++||+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.|+||||++ +
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~ 76 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------N 76 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------H
Confidence 35689985 89999999999999999999999999 99999994 333332 2235688999999998 7
Q ss_pred HHH-HcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh
Q 004826 551 HNI-RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF 629 (728)
Q Consensus 551 eNI-~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL 629 (728)
||+ .++.+ +..... ... -.+..+..+.. | | |||||++|||||
T Consensus 77 enl~~~~~~------~~~~~~--~~~-----~~~~~~~~l~~-g---------------------l--Gq~qrv~lAraL 119 (208)
T 3b85_A 77 EKIDPYLRP------LHDALR--DMV-----EPEVIPKLMEA-G---------------------I--VEVAPLAYMRGR 119 (208)
T ss_dssp ---CTTTHH------HHHHHT--TTS-----CTTHHHHHHHT-T---------------------S--EEEEEGGGGTTC
T ss_pred HHHHHHHHH------HHHHHH--Hhc-----cHHHHHHHHHh-C---------------------C--chHHHHHHHHHH
Confidence 887 45421 111000 000 00112222222 2 5 999999999999
Q ss_pred ccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEE
Q 004826 630 LKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKV 690 (728)
Q Consensus 630 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~I 690 (728)
+.+|++||||||||+ +.+.+.+.|+++.+++|+| |||+++.+. ++...++|..
T Consensus 120 ~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 120 TLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp CBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred hcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 999999999999999 8888999998875578998 999997654 4555566653
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=1.3e-27 Score=233.49 Aligned_cols=149 Identities=17% Similarity=0.266 Sum_probs=109.4
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCC--CCcccHHHHHH
Q 004826 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV--LFNDTIFHNIR 554 (728)
Q Consensus 477 ~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~--LF~gTIreNI~ 554 (728)
||||++++||.++|+||||||||||++++.+ |... ++.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2211 2334444 67788763 33444433332
Q ss_pred cCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCC
Q 004826 555 YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP 634 (728)
Q Consensus 555 ~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ 634 (728)
. .+ ...+..|+.+.+.... ..|||||||++||||+..+|+
T Consensus 64 ~------------~~--------~~~~~~g~~~~~~~~~--------------------~~s~g~~qrv~iAral~~~p~ 103 (171)
T 4gp7_A 64 Y------------IV--------SKRLQLGKLTVVDATN--------------------VQESARKPLIEMAKDYHCFPV 103 (171)
T ss_dssp H------------HH--------HHHHHTTCCEEEESCC--------------------CSHHHHHHHHHHHHHTTCEEE
T ss_pred H------------HH--------HHHHhCCCeEEEECCC--------------------CCHHHHHHHHHHHHHcCCcEE
Confidence 1 11 1122345655544333 179999999999999999999
Q ss_pred EEEEeCcCcCCCHHHH----------------HHHHHHHHHHc-CCCeEEEeccCchHHhhcCeE
Q 004826 635 ILLCDEATSALDSTTE----------------AEILNALKSLA-NNRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 635 ILILDEaTSaLD~~tE----------------~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~I 682 (728)
+|+|||||++||+.++ +.+.+.|+++. +|.|+|+|+|+++.+..++++
T Consensus 104 ~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 104 AVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp EEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred EEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 9999999999999965 67777765543 489999999999999888775
No 72
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.93 E-value=1.7e-28 Score=273.70 Aligned_cols=195 Identities=14% Similarity=0.178 Sum_probs=160.3
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCE---eCCCCC-----H
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ---DICEVT-----L 528 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~---di~~i~-----~ 528 (728)
..++++||++.|+.+.++|+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|. ++.++. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4589999999997567899999 999999999999999999999999999999999999999998 565432 4
Q ss_pred HHHhcceEEEcCC--CCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 529 ESLRKSIGVVPQD--TVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 529 ~~lR~~Ia~V~Qd--~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
..+++.|+||+|+ +....-|+.+|+.+.. +.... +...+..++ +...+
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~v~~~l------------d~l~~----------- 258 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQHVLLIM------------DSLTR----------- 258 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCEEEEEE------------ECHHH-----------
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCCHHHHH------------HhHHH-----------
Confidence 5689999999994 3345679999987641 22111 111122221 12334
Q ss_pred ccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-----CC-----eEEEeccCchHH
Q 004826 607 ERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-----NR-----TSIFIAHRLTTA 676 (728)
Q Consensus 607 ~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-----~~-----TvIvIaHRLsti 676 (728)
||||| ||++|| +++||+ |++||+.+...+.+.++++.+ |+ |++++||+++ .
T Consensus 259 --------lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~ 319 (438)
T 2dpy_A 259 --------YAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-D 319 (438)
T ss_dssp --------HHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-C
T ss_pred --------HHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-c
Confidence 99999 999999 899998 999999999999999998765 53 9999999999 7
Q ss_pred hhcCeEEEEeCCEEEEEcChHHHhh
Q 004826 677 MQCDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 677 ~~aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
..||++++|++|+|++.|+++++..
T Consensus 320 ~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 320 PIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp HHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred hhhceEEEEeCcEEEEeCCHHHccC
Confidence 8899999999999999999988854
No 73
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=4e-25 Score=241.54 Aligned_cols=79 Identities=28% Similarity=0.431 Sum_probs=74.1
Q ss_pred CCChhHHHHHHHHHHhc------cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEe
Q 004826 614 SLSGGEKQRVALARAFL------KAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld 686 (728)
+||||||||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++. .|+|+|+|||+++.++.||+|++|+
T Consensus 279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~~l~ 358 (365)
T 3qf7_A 279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKLRIT 358 (365)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEEEEE
T ss_pred hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEE
Confidence 49999999999999999 7999999999999999999999999998875 4799999999999999999999999
Q ss_pred CCEEEE
Q 004826 687 NGKVIE 692 (728)
Q Consensus 687 ~G~Ive 692 (728)
+|+|++
T Consensus 359 ~G~i~~ 364 (365)
T 3qf7_A 359 GGVVVN 364 (365)
T ss_dssp TTEEC-
T ss_pred CCEEEe
Confidence 999985
No 74
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.92 E-value=2e-27 Score=233.82 Aligned_cols=147 Identities=16% Similarity=0.170 Sum_probs=109.7
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHH
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY 566 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~ 566 (728)
+++|+||||||||||+++|+|++. |.++|.+.++......++.++|++|++ |..+|+ ++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999995 678887765544335678999999987 333333 1110
Q ss_pred HHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHH-----hccCCCEEEEeC-
Q 004826 567 DAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARA-----FLKAPPILLCDE- 640 (728)
Q Consensus 567 ~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARA-----Ll~~p~ILILDE- 640 (728)
..+ .+..+++.+.. ||||||||++|||| ++.+|++|||||
T Consensus 63 -------------~~~--~~~~~~~~~~~-------------------lSgG~~qr~~la~aa~~~~l~~~p~llilDEi 108 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVN-------------------VQYFEELAIPILERAYREAKKDRRKVIIIDEI 108 (178)
T ss_dssp -------------TCC--CSSEETTEEEC-------------------HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCC
T ss_pred -------------cCC--ccccccccccC-------------------cCHHHHHHHHHHhhccccccccCCCEEEEeCC
Confidence 001 01345556655 99999999999996 999999999999
Q ss_pred -cCcCCCHHHHHHHHHHHHHHcCCCeEEEecc---CchHHhh-cCeEEEEeCCEEEE
Q 004826 641 -ATSALDSTTEAEILNALKSLANNRTSIFIAH---RLTTAMQ-CDEIIVLENGKVIE 692 (728)
Q Consensus 641 -aTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH---RLsti~~-aD~IiVld~G~Ive 692 (728)
||++||+.+.+.+.+.+++ .+.|+|+++| +...+.. ||+ ++|+|++
T Consensus 109 gp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 109 GKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp STTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 9999999999999999876 5677999996 5555544 676 6677776
No 75
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.91 E-value=7.6e-29 Score=258.59 Aligned_cols=184 Identities=20% Similarity=0.185 Sum_probs=154.1
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-CCEEEECCEeCCCCCHHHHhcceEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGV 537 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~di~~i~~~~lR~~Ia~ 537 (728)
++++|++|. ++|+++| +++|+.++|+||||||||||+++|+|+|+|+ +|+|.++|.|+..+. ++.+++
T Consensus 6 ~~l~~l~~~-----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~ 74 (261)
T 2eyu_A 6 PEFKKLGLP-----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSI 74 (261)
T ss_dssp CCGGGSSCC-----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSE
T ss_pred CChHHCCCH-----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCccee
Confidence 345566542 5899999 9999999999999999999999999999998 999999999886553 455778
Q ss_pred EcC-----CCCCCcccHHHHHHcCCCCC-------CHHHHHHHHHHhcc-----------------HHHH----------
Q 004826 538 VPQ-----DTVLFNDTIFHNIRYGRLSA-------TEEEVYDAARRAAI-----------------HDTI---------- 578 (728)
Q Consensus 538 V~Q-----d~~LF~gTIreNI~~g~~~~-------sdeei~~A~~~a~l-----------------~~~I---------- 578 (728)
|+| ++..|..+|+.+++. +|+. +.+.++++++.+.- +..+
T Consensus 75 v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~ 153 (261)
T 2eyu_A 75 VNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQ 153 (261)
T ss_dssp EEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHH
T ss_pred eeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccch
Confidence 898 777889999999987 5655 77777777766532 1111
Q ss_pred --HhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCE--EEEeCcCcCCCHHH-----
Q 004826 579 --MNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPI--LLCDEATSALDSTT----- 649 (728)
Q Consensus 579 --~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~I--LILDEaTSaLD~~t----- 649 (728)
..+|+++++.|++++.. +||| ||+++||+++.||+| +|+||+||+||...
T Consensus 154 ~~~~l~~~l~~vi~qrl~~-------------------~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~ 212 (261)
T 2eyu_A 154 VRIVLSFILQGIISQRLLP-------------------KIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQA 212 (261)
T ss_dssp HHHHHHHHEEEEEEEEEEC-------------------CSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCS
T ss_pred HHHHHHHHhhEEEEEEeEe-------------------cCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHH
Confidence 23568999999999988 9999 999999999999999 99999999999974
Q ss_pred ----HHHHHHHHHHHcCCCeEEEeccCchH
Q 004826 650 ----EAEILNALKSLANNRTSIFIAHRLTT 675 (728)
Q Consensus 650 ----E~~I~~~L~~l~~~~TvIvIaHRLst 675 (728)
|..++++++.+.+|+|++.++||++.
T Consensus 213 ~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 242 (261)
T 2eyu_A 213 ETGMQTMNQTLYKLYKQGLITLEDAMEASP 242 (261)
T ss_dssp CTTEECHHHHHHHHHHTTSSCHHHHHHHCS
T ss_pred hcCCccHHHHHHHHHHcCCCCHHHHHHHhC
Confidence 45788999999999999999999973
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.90 E-value=1e-26 Score=256.49 Aligned_cols=168 Identities=15% Similarity=0.180 Sum_probs=134.1
Q ss_pred ceeeeeeeEEEeCCc--------------------EEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHH
Q 004826 472 RKILDGVSFVVPAGK--------------------SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESL 531 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge--------------------~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~l 531 (728)
+.+|++|||+|++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998763
Q ss_pred hcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 532 RKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
| .++|+|++...+-|+.||+.++.+. +.+.++++..++.+. +..+ .
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~~--------~~~~-----~---------------- 154 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYEY--------DFFI-----I---------------- 154 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGGC--------SEEE-----E----------------
T ss_pred e--eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCcc--------CCeE-----E----------------
Confidence 2 2789999865578999999887542 345566666665431 1111 1
Q ss_pred CCCCChh--HHHHHHHHHHhcc----------CCCEEEEeCcCcCCCHHHHHHHHHHHHHHc------C----CCeEEEe
Q 004826 612 FVSLSGG--EKQRVALARAFLK----------APPILLCDEATSALDSTTEAEILNALKSLA------N----NRTSIFI 669 (728)
Q Consensus 612 ~~~LSGG--QrQRIaIARALl~----------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~------~----~~TvIvI 669 (728)
|||| ||||++|||||.+ +|++++|||||++||+.+.+.+.+.|+++. . .+++++-
T Consensus 155 ---lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliS 231 (413)
T 1tq4_A 155 ---ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLS 231 (413)
T ss_dssp ---EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECC
T ss_pred ---eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 8999 9999999999999 999999999999999999999998887763 1 2556677
Q ss_pred ccCchH--Hhh-cCeEE
Q 004826 670 AHRLTT--AMQ-CDEII 683 (728)
Q Consensus 670 aHRLst--i~~-aD~Ii 683 (728)
||.++- ++. ||+|.
T Consensus 232 sh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 232 NKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp TTCTTSTTHHHHHHHHH
T ss_pred cCcCCccCHHHHHHHHH
Confidence 998875 544 77763
No 77
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.90 E-value=3.9e-27 Score=257.95 Aligned_cols=175 Identities=19% Similarity=0.168 Sum_probs=150.0
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-CCEEEECCEeCCCCCHHHHhcceEEEcC-----CCCCCc
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLRKSIGVVPQ-----DTVLFN 546 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~di~~i~~~~lR~~Ia~V~Q-----d~~LF~ 546 (728)
++|++++ +++|+.++|||||||||||++++|+|+|+|+ +|+|.++|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3566665 8999999999999999999999999999998 899988776664 3 46789999999 999999
Q ss_pred ccHHHHHHcCCCCC-------CHHHHHHHHHHhccH-----------------HHH------------HhCCCcccchhh
Q 004826 547 DTIFHNIRYGRLSA-------TEEEVYDAARRAAIH-----------------DTI------------MNFPAKYSTVVG 590 (728)
Q Consensus 547 gTIreNI~~g~~~~-------sdeei~~A~~~a~l~-----------------~~I------------~~LP~G~dT~vg 590 (728)
++|++||++ +|+. +++.++.+++.++.. ..+ ..+|+++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999998 5766 778888888887542 111 235789999999
Q ss_pred ccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCE--EEEeCcCcCCCHH----H-----HHHHHHHHHH
Q 004826 591 ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPI--LLCDEATSALDST----T-----EAEILNALKS 659 (728)
Q Consensus 591 E~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~I--LILDEaTSaLD~~----t-----E~~I~~~L~~ 659 (728)
+++.. +||| ||++|||+++.+|+| +|+||+||+||.. + |..++++++.
T Consensus 279 qrl~~-------------------~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ 337 (372)
T 2ewv_A 279 QRLLP-------------------KIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKL 337 (372)
T ss_dssp EEEEE-------------------CSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHT
T ss_pred EEeEe-------------------cCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHH
Confidence 99988 9999 999999999999999 9999999999976 3 5578889998
Q ss_pred HcCCCeEEEeccCchH
Q 004826 660 LANNRTSIFIAHRLTT 675 (728)
Q Consensus 660 l~~~~TvIvIaHRLst 675 (728)
+.+|+|++.++||++.
T Consensus 338 ~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 338 YKQGLITLEDAMEASP 353 (372)
T ss_dssp TTTSSSCTTTTTSSCS
T ss_pred HHCCCCCHHHHHHHcC
Confidence 9999999999999984
No 78
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.89 E-value=8.5e-27 Score=249.15 Aligned_cols=174 Identities=14% Similarity=0.197 Sum_probs=129.3
Q ss_pred CceEEEEEEEEEecCCceeeeeeeEE-----------------------EeCCcEEEEECCCCccHHHHHHHHhcCCCCC
Q 004826 456 GGSIQFDNVHFSYLTERKILDGVSFV-----------------------VPAGKSVAIVGTSGSGKSTILRLLFRSFDTH 512 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~-----------------------I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~ 512 (728)
.+.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|+|+++|+
T Consensus 41 ~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp TCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 45799999999994 577777764 8999999999999999999999999999998
Q ss_pred CCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcC----CCCC-CHHHHHHHHHHhccHHHHHhCCCccc-
Q 004826 513 SGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG----RLSA-TEEEVYDAARRAAIHDTIMNFPAKYS- 586 (728)
Q Consensus 513 ~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g----~~~~-sdeei~~A~~~a~l~~~I~~LP~G~d- 586 (728)
+|. +++++|+||+++|..|++||+.+. .|.. +.+. +.++++.+..|+.
T Consensus 118 ~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~---------~~~~L~~l~~~~~~ 171 (312)
T 3aez_A 118 DHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRA---------LMRFVTSVKSGSDY 171 (312)
T ss_dssp TTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHH---------HHHHHHHHHTTCSC
T ss_pred CCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHH---------HHHHHHHhCCCccc
Confidence 774 579999999999999999999753 2221 1222 3344555444443
Q ss_pred chhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeE
Q 004826 587 TVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTS 666 (728)
Q Consensus 587 T~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~Tv 666 (728)
..+. . |||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.. + .+
T Consensus 172 ~~~~----~-------------------lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~ 221 (312)
T 3aez_A 172 ACAP----V-------------------YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FS 221 (312)
T ss_dssp EEEE----E-------------------EETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EE
T ss_pred CCcc----c-------------------CChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cE
Confidence 3322 2 99999999999999999999999999999998622 1233332 2 45
Q ss_pred EEeccCchHH--hhcCeEEEEeCC
Q 004826 667 IFIAHRLTTA--MQCDEIIVLENG 688 (728)
Q Consensus 667 IvIaHRLsti--~~aD~IiVld~G 688 (728)
|+|.|..+.. +..+|.+.+.+|
T Consensus 222 I~V~a~~~~~~~R~i~R~~~~rd~ 245 (312)
T 3aez_A 222 LYVDARIEDIEQWYVSRFLAMRTT 245 (312)
T ss_dssp EEEEECHHHHHHHHHHHHHHHTTT
T ss_pred EEEECCHHHHHHHHHHHHHHHHhc
Confidence 7777776553 235555544443
No 79
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.89 E-value=2.5e-26 Score=224.36 Aligned_cols=111 Identities=21% Similarity=0.297 Sum_probs=89.9
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCC---CCEEEECCEeCCCCC---HHHHh-cceE----EEcCCCCCCcccHHHHHH
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQDICEVT---LESLR-KSIG----VVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~di~~i~---~~~lR-~~Ia----~V~Qd~~LF~gTIreNI~ 554 (728)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999999887 77888 5788 899999998 221
Q ss_pred cCCCCCCHHHHHHHHHHhccHHHHHh-CCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCC
Q 004826 555 YGRLSATEEEVYDAARRAAIHDTIMN-FPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP 633 (728)
Q Consensus 555 ~g~~~~sdeei~~A~~~a~l~~~I~~-LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p 633 (728)
+ + +++ .|+++++|.. || ||||.|+| | |||||||||+||||++++|
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~-g~dt~i~E-g---------------------lSgGq~qri~lARall~~p 122 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS-DYDLVITE-G---------------------FSKAGKDRIVVVKKPEEVE 122 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT-TCSEEEEE-S---------------------CGGGCCCEEEECSSGGGGG
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC-CCCEEEEC-C---------------------cCCCCCcEEEEEecccCCC
Confidence 1 1 222 7899999999 99 99999999 3 9999999999999999999
Q ss_pred CEE
Q 004826 634 PIL 636 (728)
Q Consensus 634 ~IL 636 (728)
+|.
T Consensus 123 ~i~ 125 (171)
T 2f1r_A 123 HFR 125 (171)
T ss_dssp GGC
T ss_pred ccC
Confidence 874
No 80
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.88 E-value=3.5e-26 Score=228.68 Aligned_cols=169 Identities=20% Similarity=0.275 Sum_probs=133.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCC-------------CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCccc
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDT 548 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gT 548 (728)
+++|++++||||||||||||+++|+|+|+ |..|+ +||+++..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999987 88998 699999999999999986 7999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHH-
Q 004826 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALAR- 627 (728)
Q Consensus 549 IreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIAR- 627 (728)
+.+|+ ||. ++++++++++.+.+.-+ .-.|+|+++.... ++ .||
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~------------------------------~~-~~~~ 119 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT------------------------------DL-CPIY 119 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS------------------------------SC-CCEE
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc------------------------------CC-CcEE
Confidence 99998 874 68889999886533222 2246666664321 12 567
Q ss_pred HhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhh
Q 004826 628 AFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 628 ALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~ 701 (728)
+++++|++++|||+|+++|.+||+.|++.|.+..++ +.++| ++ ..+|.|+|+|+ -..+.++|.+
T Consensus 120 ~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 120 IFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp EEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 899999999999999999999999999999877654 46788 66 89999999885 2344555543
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=2.1e-24 Score=229.55 Aligned_cols=175 Identities=15% Similarity=0.211 Sum_probs=127.8
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHH--hcceEEEcCCCC-CC-cc
Q 004826 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTV-LF-ND 547 (728)
Q Consensus 476 ~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~----~~~l--R~~Ia~V~Qd~~-LF-~g 547 (728)
+++||++++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|+||+|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578899999999999999999999999999999999999999999987653 2334 457999999997 66 45
Q ss_pred cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHH
Q 004826 548 TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALAR 627 (728)
Q Consensus 548 TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIAR 627 (728)
|++||+.++...-.+ ...++ | -|..+....+... || |||++|||
T Consensus 171 ~v~e~l~~~~~~~~d------------~~lld-------t----~gl~~~~~~~~~e----------LS---kqr~~iar 214 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD------------VVLCD-------T----SGRLHTNYSLMEE----------LI---ACKKAVGK 214 (302)
T ss_dssp HHHHHHHHHHHTTCS------------EEEEC-------C----CCCSSCCHHHHHH----------HH---HHHHHHHT
T ss_pred HHHHHHHHHHHcCCc------------chHHh-------c----CCCCcchhHHHHH----------HH---HHHHHHHH
Confidence 999999875210000 00111 1 1111111112221 88 99999999
Q ss_pred HhccCCC--EEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEecc---------CchHHh-hcCeEEEEeCCEEE
Q 004826 628 AFLKAPP--ILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH---------RLTTAM-QCDEIIVLENGKVI 691 (728)
Q Consensus 628 ALl~~p~--ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH---------RLsti~-~aD~IiVld~G~Iv 691 (728)
|+..+|+ +|+|| ||+++|+.+.. +.+.+ ..+.|+|++|| .++.+. ..+.|.++..|+.+
T Consensus 215 al~~~P~e~lLvLD-ptsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 215 IVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp TSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred hhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9999999 99999 99999998653 22322 24799999999 455553 46899999999754
No 82
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.87 E-value=3e-22 Score=217.45 Aligned_cols=82 Identities=22% Similarity=0.240 Sum_probs=76.3
Q ss_pred CCChhHHHHHHHHHHhc---------cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEE
Q 004826 614 SLSGGEKQRVALARAFL---------KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIV 684 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl---------~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiV 684 (728)
.||||||||++|||+|+ .+||||+||||||+||+...+.+.+.|.++. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 39999999999999999 8999999999999999999999999998864 89999999 554 8999999
Q ss_pred EeCCEEEEEcChHHHh
Q 004826 685 LENGKVIEQGSHDDLL 700 (728)
Q Consensus 685 ld~G~Ive~Gth~eLl 700 (728)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999998873
No 83
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.87 E-value=4.8e-24 Score=223.36 Aligned_cols=150 Identities=19% Similarity=0.215 Sum_probs=96.9
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcc-cHHHHHHcCCCCCCHHHH
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEV 565 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIreNI~~g~~~~sdeei 565 (728)
++|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++|+|++.++.. |+.||+.||..... ++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~-~~~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN-ENC 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBC-TTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhccc-HHH
Confidence 589999999999999999999999999999999988743 3457889999999998865 99999999864222 222
Q ss_pred HHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCC
Q 004826 566 YDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSAL 645 (728)
Q Consensus 566 ~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaL 645 (728)
++.+......++-..+ .+ . ||||||||++||||+.. +++|||||++|
T Consensus 80 ~~~i~~~~~~~~~~~~-------~~----~-------------------LS~G~~qrv~iaRal~~---lllldep~~gL 126 (270)
T 3sop_A 80 WEPIEKYINEQYEKFL-------KE----E-------------------VNIARKKRIPDTRVHCC---LYFISPTGHSL 126 (270)
T ss_dssp SHHHHHHHHHHHHHHH-------HH----H-------------------SCTTCCSSCCCCSCCEE---EEEECCCSSSC
T ss_pred HHHHHHHHHHHHHhhh-------HH----h-------------------cCcccchhhhhheeeee---eEEEecCCCcC
Confidence 2222222112222221 11 2 99999999999999876 99999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEeccCchHHh
Q 004826 646 DSTTEAEILNALKSLANNRTSIFIAHRLTTAM 677 (728)
Q Consensus 646 D~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~ 677 (728)
|+.. ..+++.|.+ .+++|+|.|+..++.
T Consensus 127 ~~lD-~~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 127 RPLD-LEFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp CHHH-HHHHHHHHT---TSEEEEEETTGGGSC
T ss_pred CHHH-HHHHHHHHh---cCcEEEEEeccccCC
Confidence 9986 444455543 489999999987663
No 84
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.87 E-value=1.6e-26 Score=252.15 Aligned_cols=220 Identities=12% Similarity=0.041 Sum_probs=164.1
Q ss_pred HHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCCCCC-CCCCceE--
Q 004826 384 LCSHGILS-GEMTVGDLVMVNGLLFQLSLPLNFLGSVYRETVQSLVDMKSMFQLLEEKADIQDRDNAMPL-NLKGGSI-- 459 (728)
Q Consensus 384 ~g~~~v~~-g~lt~G~l~a~~~~~~~l~~pl~~l~~~~~~~~~a~~s~~rl~~ll~~~~~~~~~~~~~~~-~~~~g~I-- 459 (728)
.|++.+.+ |.+|.|++.+|+.++..+..| .+......++.+..+.+|+.+++ +|...+....... ....+.+
T Consensus 54 ~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~itl 129 (361)
T 2gza_A 54 ASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRRTL 129 (361)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCCCH
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCCCH
Confidence 45555555 889999999999988887776 34333334444555667888777 3322211100000 1112345
Q ss_pred -------EEEEEEEE---ecC-Cceee---------eeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 004826 460 -------QFDNVHFS---YLT-ERKIL---------DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (728)
Q Consensus 460 -------~f~nVsF~---Y~~-~~~vL---------~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (728)
+|+||+|+ |++ ++++| +++||+|++|+.++|+||||||||||+++|+|+|+|++|.|.++
T Consensus 130 ~~l~~~g~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 130 EDYAQQGFFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHTTTTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHhcCCcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 89999999 964 34566 99999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhcceEEEc-CCCCC---CcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccc
Q 004826 520 GQDICEVTLESLRKSIGVVP-QDTVL---FNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLK 595 (728)
Q Consensus 520 G~di~~i~~~~lR~~Ia~V~-Qd~~L---F~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~ 595 (728)
|. .++....+|+.+++|+ |++.+ +..|+++||.++....+|..+..+++.++++++++.+|.|++|.+++-+.+
T Consensus 210 ~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~ 287 (361)
T 2gza_A 210 DV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAG 287 (361)
T ss_dssp SS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECS
T ss_pred Cc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 85 5666667889999999 99887 889999999998665556556666777788999999999999999999877
Q ss_pred cchhHHHhhhhccCCCCCCCChhHHHHHHHHHH
Q 004826 596 GRSLLYIQKKLERRPLFVSLSGGEKQRVALARA 628 (728)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARA 628 (728)
-+.+..+|+.....
T Consensus 288 -------------------~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 288 -------------------SCELTFERLALMVL 301 (361)
T ss_dssp -------------------SHHHHHHHHHHHHT
T ss_pred -------------------CHHHHHHHHHHHHh
Confidence 78899999988763
No 85
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=3.5e-23 Score=224.15 Aligned_cols=193 Identities=15% Similarity=0.225 Sum_probs=149.3
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC-------CCHHH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE-------VTLES 530 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~-------i~~~~ 530 (728)
-++.+||++.|..+..+|+++ |+|.+||+++|+|+||||||||+++|+|+.+|+.|.|.++|.+.++ .....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred CeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 588999999997566899999 9999999999999999999999999999999999999999975322 23334
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhh-ccccccchhHHHhhhhccC
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG-ERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vg-E~G~~~~~~~~~~~~~~~~ 609 (728)
+++.+.+++|... ...+++..+.....+.++... .|.|..+- +.-.+
T Consensus 124 ~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~-------------- 171 (347)
T 2obl_A 124 LSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTR-------------- 171 (347)
T ss_dssp HTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHH--------------
T ss_pred hhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHH--------------
Confidence 5666777776421 112344444444444444333 23332110 11122
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc---CCC-----eEEEeccCchHHhhcCe
Q 004826 610 PLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA---NNR-----TSIFIAHRLTTAMQCDE 681 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~---~~~-----TvIvIaHRLsti~~aD~ 681 (728)
||+|| ||+++| +.+|++ |+++|+..-..+.+-++++. +|. |++++||+++ -.-||+
T Consensus 172 -----lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~ 235 (347)
T 2obl_A 172 -----YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDE 235 (347)
T ss_dssp -----HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHH
T ss_pred -----HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-Chhhhh
Confidence 99999 999999 689998 99999999999999998875 366 9999999999 677999
Q ss_pred EEEEeCCEEEEEcChHHH
Q 004826 682 IIVLENGKVIEQGSHDDL 699 (728)
Q Consensus 682 IiVld~G~Ive~Gth~eL 699 (728)
+++|.+|+|+..|+.+|+
T Consensus 236 v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 236 VRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHCSEEEEBCHHHHTT
T ss_pred eEEeeCcEEEEeCCHHHc
Confidence 999999999999988776
No 86
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=1.8e-23 Score=226.71 Aligned_cols=174 Identities=16% Similarity=0.219 Sum_probs=128.7
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHH--hcceEEEcCCCC-CC-ccc
Q 004826 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTV-LF-NDT 548 (728)
Q Consensus 477 ~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~----~~~l--R~~Ia~V~Qd~~-LF-~gT 548 (728)
++||++++|+.++|||+|||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|++|+|++. ++ ..|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 578899999999999999999999999999999999999999999986643 2333 568999999987 55 569
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHH
Q 004826 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARA 628 (728)
Q Consensus 549 IreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARA 628 (728)
++|||.++.....+. ..+ || -|..+....+... || |||++||||
T Consensus 229 v~e~l~~~~~~~~d~------------~ll-------dt----~Gl~~~~~~~~~e----------LS---kqr~~iara 272 (359)
T 2og2_A 229 LSKAVKRGKEEGYDV------------VLC-------DT----SGRLHTNYSLMEE----------LI---ACKKAVGKI 272 (359)
T ss_dssp HHHHHHHHHHTTCSE------------EEE-------EC----CCCSSCCHHHHHH----------HH---HHHHHHHHH
T ss_pred HHHHHHHHHhCCCHH------------HHH-------Hh----cCCChhhhhHHHH----------HH---HHHHHHHHH
Confidence 999998753110000 011 11 1111111112221 88 999999999
Q ss_pred hccCCC--EEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEecc---------CchHHh-hcCeEEEEeCCEEE
Q 004826 629 FLKAPP--ILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH---------RLTTAM-QCDEIIVLENGKVI 691 (728)
Q Consensus 629 Ll~~p~--ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH---------RLsti~-~aD~IiVld~G~Iv 691 (728)
+..+|+ +|+|| ||+++|+.+... .+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.+
T Consensus 273 l~~~P~e~lLvLD-pttglD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 273 VSGAPNEILLVLD-GNTGLNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp STTCCSEEEEEEE-GGGGGGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred HhcCCCceEEEEc-CCCCCCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 999999 99999 999999987642 2322 24799999999 455553 46899999999753
No 87
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.85 E-value=6.3e-24 Score=213.53 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=109.7
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcc-cHH
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIF 550 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIr 550 (728)
.++++| .+|++||+++|+||||||||||+++|+|+++ .|.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 478998 7999999999999999999999999999996 355554221111112346789999999988754 556
Q ss_pred HHHHc-----CC-C--CCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH
Q 004826 551 HNIRY-----GR-L--SATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR 622 (728)
Q Consensus 551 eNI~~-----g~-~--~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR 622 (728)
+|+.. ++ . ..+.+++.+.++.+. +.+.. .. +.|.+.++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~--~~~~~-------------l~-------------------~~gl~~~~ 128 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGV--PVLIE-------------VD-------------------LAGARAIK 128 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTC--CEEEE-------------CC-------------------HHHHHHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCC--eEEEE-------------eC-------------------HHHHHHHH
Confidence 66531 10 0 123444444433320 00000 00 22222222
Q ss_pred HHHHH---HhccCCCEEEEeCcCcCC----CHHHHHHHHHHHHHHc--CCCeEEEeccCchHHh-hcCeEEEEe
Q 004826 623 VALAR---AFLKAPPILLCDEATSAL----DSTTEAEILNALKSLA--NNRTSIFIAHRLTTAM-QCDEIIVLE 686 (728)
Q Consensus 623 IaIAR---ALl~~p~ILILDEaTSaL----D~~tE~~I~~~L~~l~--~~~TvIvIaHRLsti~-~aD~IiVld 686 (728)
-..++ ||+.+|++++|||||+++ |+.+.+.+.+.++++. .++|+|+|+|.++.+. .||+|++|.
T Consensus 129 ~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 129 KTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 22222 899999999999999998 7788899998888774 4799999999999876 499999985
No 88
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.84 E-value=1.4e-23 Score=208.17 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=128.7
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHH
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEE 564 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdee 564 (728)
|++++|+||||||||||+++|+|+++ ++| |.+||.++.++. .+++.+++++|+. +++ ++|+.--....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999999 999 999999987654 5799999999986 443 233321100000
Q ss_pred HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHH-HHHH---HhccCCCEEEEeC
Q 004826 565 VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRV-ALAR---AFLKAPPILLCDE 640 (728)
Q Consensus 565 i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRI-aIAR---ALl~~p~ILILDE 640 (728)
+...+..+|+.|.. +|||||+++ +++| |+..+|++|||||
T Consensus 70 -----------------~~~~~~~v~~~~~~-------------------ls~~er~~~~~l~~~a~A~~~~~dvlilDE 113 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVD-------------------LTSFEQLALPVLRNADCSSGPGQRVCVIDE 113 (189)
T ss_dssp -----------------SSSCCEESSSSEEC-------------------HHHHHTTTTTTTCCCCCCCSSCCCCEEECC
T ss_pred -----------------ccccccccceEEEc-------------------chHHHHHHHHHHhhhhHhhccCCCEEEEeC
Confidence 11234478888887 999999999 6666 7899999999999
Q ss_pred --cCcCCCHHHHHHHHHHHHHHcCCCeEEE--e--ccCchHHhhcCeEEEEeCCEEEEEcChHHHhhccchHHHHH
Q 004826 641 --ATSALDSTTEAEILNALKSLANNRTSIF--I--AHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTKAGRYAQLW 710 (728)
Q Consensus 641 --aTSaLD~~tE~~I~~~L~~l~~~~TvIv--I--aHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~~g~Y~~l~ 710 (728)
||..+|...-+.+.+.++. .+|+|+ | +||.+ ...+|+|..+++|+|++-... +++..|.+++
T Consensus 114 ~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~~----nr~~~~~~i~ 181 (189)
T 2i3b_A 114 IGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTKE----NRNHLLPDIV 181 (189)
T ss_dssp CSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCSS----SGGGHHHHHH
T ss_pred CCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeChH----hHHHHHHHHH
Confidence 8888999887777777653 456664 4 49986 567899999999999975431 2344455554
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.82 E-value=2e-21 Score=232.32 Aligned_cols=89 Identities=34% Similarity=0.489 Sum_probs=84.4
Q ss_pred CChhHHHHHHHHHHhccCCC--EEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------
Q 004826 615 LSGGEKQRVALARAFLKAPP--ILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~--ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------ 685 (728)
||||||||++|||||..+|+ +|||||||++||+...+.+++.|+++. .|.|+|+|+|++..++.||+|++|
T Consensus 465 LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd~~~~~~aD~ii~lgpgag~ 544 (916)
T 3pih_A 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEVIRNADHIIDIGPGGGT 544 (916)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCCHHHHHTCSEEEEEESSSGG
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEcCCccc
Confidence 99999999999999999887 999999999999999999999999875 479999999999999999999999
Q ss_pred eCCEEEEEcChHHHhhcc
Q 004826 686 ENGKVIEQGSHDDLLTKA 703 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~~ 703 (728)
++|+|+.+|+++|+++..
T Consensus 545 ~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 545 NGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp GCSEEEEEECHHHHHHSC
T ss_pred CCCEEEEeechhhhhcCc
Confidence 899999999999998753
No 90
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.82 E-value=7e-23 Score=223.86 Aligned_cols=148 Identities=18% Similarity=0.265 Sum_probs=118.8
Q ss_pred eeeeeeEEEeC--CcEEEEECCCCccHHHHHHHHhcCCCCCC----CEEEE----CCEeCCCCCHHHHhcceEEEcCCCC
Q 004826 474 ILDGVSFVVPA--GKSVAIVGTSGSGKSTILRLLFRSFDTHS----GSIRI----DGQDICEVTLESLRKSIGVVPQDTV 543 (728)
Q Consensus 474 vL~~isl~I~~--Ge~vAIVG~SGSGKSTL~~LL~gly~p~~----G~I~i----dG~di~~i~~~~lR~~Ia~V~Qd~~ 543 (728)
+.+.|+++|++ |+++||||+||||||||+++|+|+|+|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 99987 46666 5666667 56999999999
Q ss_pred CCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCc--ccchh-h-------ccccccchhHHHhhhhccCCCCC
Q 004826 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAK--YSTVV-G-------ERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 544 LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G--~dT~v-g-------E~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
+|.+|++|||.+++++..+..++..........++..++.+ +|..+ + ++|.+
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~------------------ 296 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLR------------------ 296 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-------------------------
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCc------------------
Confidence 99999999999987766677777777766777888887754 55432 3 56666
Q ss_pred CCChhHHHHHHHHHHh---cc--CCCEEEEeCcC
Q 004826 614 SLSGGEKQRVALARAF---LK--APPILLCDEAT 642 (728)
Q Consensus 614 ~LSGGQrQRIaIARAL---l~--~p~ILILDEaT 642 (728)
+|+||+||++|+|+| ++ +++|+++||||
T Consensus 297 -~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 297 -SLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp -----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred -CCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 999999999999999 87 89999999997
No 91
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.82 E-value=2.8e-21 Score=204.75 Aligned_cols=181 Identities=15% Similarity=0.129 Sum_probs=124.0
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC-EEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G-~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 551 (728)
++|+++++.+++|+.++|+|+||||||||++.|++...|++| .|.+.+.+ .+...+++.+..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 579999999999999999999999999999999999999988 77665433 3566677666666655432 2345
Q ss_pred HHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhH-HHHHHHHHHhc
Q 004826 552 NIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE-KQRVALARAFL 630 (728)
Q Consensus 552 NI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQ-rQRIaIARALl 630 (728)
|+..+. .++++..++++. .+...+-+++ +.-.. +|.+| +||+. |+|+.
T Consensus 97 ~l~~~~--~~~~~~~~~~~~-----~l~~~~l~i~----~~~~~-------------------~~~~~l~~~~~-a~~~~ 145 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWFDE-----LFGNDTFHLY----DSFAE-------------------AETDRLLAKLA-YMRSG 145 (296)
T ss_dssp HHHHHH--HHHTHHHHHHHH-----HHSSSCEEEE----CCCCS-------------------CCHHHHHHHHH-HHHHT
T ss_pred ccccCC--CCHHHHHHHHHH-----HhccCCEEEE----CCCCC-------------------CCHHHHHHHHH-HHHHh
Confidence 555432 223333333222 2222222211 11112 88998 77777 99999
Q ss_pred cCCCEEEEeCcCc---C---CCH-HHHHHHHHHHHHHc--CCCeEEEeccCc--h--------------------HH-hh
Q 004826 631 KAPPILLCDEATS---A---LDS-TTEAEILNALKSLA--NNRTSIFIAHRL--T--------------------TA-MQ 678 (728)
Q Consensus 631 ~~p~ILILDEaTS---a---LD~-~tE~~I~~~L~~l~--~~~TvIvIaHRL--s--------------------ti-~~ 678 (728)
.+|+++||||||+ + +|. ..-..+.+.|+++. .++|+|+++|.. . .+ ..
T Consensus 146 ~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~ 225 (296)
T 1cr0_A 146 LGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQL 225 (296)
T ss_dssp TCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHH
T ss_pred cCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhh
Confidence 9999999999999 4 444 45567888887764 389999999995 3 34 46
Q ss_pred cCeEEEEeCCEE
Q 004826 679 CDEIIVLENGKV 690 (728)
Q Consensus 679 aD~IiVld~G~I 690 (728)
||+|++|++|+.
T Consensus 226 aD~vi~L~~~~~ 237 (296)
T 1cr0_A 226 SDTIIALERNQQ 237 (296)
T ss_dssp CSEEEEEEEC--
T ss_pred CcEEEEEecCcc
Confidence 999999999885
No 92
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.82 E-value=6e-21 Score=231.77 Aligned_cols=171 Identities=18% Similarity=0.207 Sum_probs=123.2
Q ss_pred ceEEEEE-----EEEEecCCceeeeeeeEEEeC-------CcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 004826 457 GSIQFDN-----VHFSYLTERKILDGVSFVVPA-------GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (728)
Q Consensus 457 g~I~f~n-----VsF~Y~~~~~vL~~isl~I~~-------Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (728)
+.|+++| |++.|+++++|++|++|++++ |+.++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 3599999 999996667899999999988 999999999999999999999 99863
Q ss_pred CCCHHHHhcceE-EEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 525 EVTLESLRKSIG-VVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 525 ~i~~~~lR~~Ia-~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
+.++| ||||++. .-|+.|||.. +- ++.|.+. .|. ..
T Consensus 815 -------~aqiG~~Vpq~~~--~l~v~d~I~~-ri--------------g~~d~~~---~~~--------st-------- 851 (1022)
T 2o8b_B 815 -------MAQMGCYVPAEVC--RLTPIDRVFT-RL--------------GASDRIM---SGE--------ST-------- 851 (1022)
T ss_dssp -------HHTTTCCEESSEE--EECCCSBEEE-EC--------------C--------------------CH--------
T ss_pred -------HhheeEEeccCcC--CCCHHHHHHH-Hc--------------CCHHHHh---hch--------hh--------
Confidence 34666 9999983 5677777731 11 1112111 111 12
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHH-HHHHHHHHHHc-C-CCeEEEeccCchHHhh-c
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTE-AEILNALKSLA-N-NRTSIFIAHRLTTAMQ-C 679 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE-~~I~~~L~~l~-~-~~TvIvIaHRLsti~~-a 679 (728)
+|+++++ +++||+++.+|+++||||||+++|+... ..+.+.|+.+. + ++|+|++||.++.+.. +
T Consensus 852 -----------f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~ 919 (1022)
T 2o8b_B 852 -----------FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYS 919 (1022)
T ss_dssp -----------HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTS
T ss_pred -----------hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhC
Confidence 7887775 9999999999999999999999999874 44566676664 3 8999999999998765 8
Q ss_pred CeEEEEeCCEEE--EEcChH
Q 004826 680 DEIIVLENGKVI--EQGSHD 697 (728)
Q Consensus 680 D~IiVld~G~Iv--e~Gth~ 697 (728)
|++.|+ +|+++ +.|+.+
T Consensus 920 d~~~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 920 QNVAVR-LGHMACMVENECE 938 (1022)
T ss_dssp SCSSEE-EEEEEEC------
T ss_pred Ccceee-cCeEEEEEecCcc
Confidence 999887 58887 556543
No 93
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.82 E-value=1.2e-22 Score=232.58 Aligned_cols=171 Identities=17% Similarity=0.157 Sum_probs=121.7
Q ss_pred EecCCceeeeeeeE-EEeCCcEEEEECCCCccHHHHHHH--HhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCC
Q 004826 467 SYLTERKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRL--LFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (728)
Q Consensus 467 ~Y~~~~~vL~~isl-~I~~Ge~vAIVG~SGSGKSTL~~L--L~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~ 543 (728)
+|+.+.++|++||| .|++|+.++|+||||||||||++. +.|+++|++|.|+++|.+. .......++.+|+++|++.
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 45666789999999 999999999999999999999999 6899999999999999873 2234456678999999875
Q ss_pred CCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHH
Q 004826 544 LFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRV 623 (728)
Q Consensus 544 LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRI 623 (728)
.. +|+.+-..... ++.+++++..++.+..... -.. |||||
T Consensus 99 ~~-----~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~-----------~~~-------------------LS~g~---- 138 (525)
T 1tf7_A 99 DE-----GKLFILDASPD-PEGQEVVGGFDLSALIERI-----------NYA-------------------IQKYR---- 138 (525)
T ss_dssp HT-----TSEEEEECCCC-SSCCSCCSSHHHHHHHHHH-----------HHH-------------------HHHHT----
T ss_pred cc-----CcEEEEecCcc-cchhhhhcccCHHHHHHHH-----------HHH-------------------HHHcC----
Confidence 31 12222111000 0001111111111111110 011 66664
Q ss_pred HHHHHhccCCCEEEEeCcCcC-----CCHHHHHHHHHHHHHHc-CCCeEEEeccCchHH---------hh-cCeEEEEeC
Q 004826 624 ALARAFLKAPPILLCDEATSA-----LDSTTEAEILNALKSLA-NNRTSIFIAHRLTTA---------MQ-CDEIIVLEN 687 (728)
Q Consensus 624 aIARALl~~p~ILILDEaTSa-----LD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti---------~~-aD~IiVld~ 687 (728)
|++++|||||+. ||+...+.+.+.++.+. .|+|+|+|+|+++.+ .. ||+|++|++
T Consensus 139 ---------~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 139 ---------ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp ---------CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred ---------CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 779999999985 58899999998887764 489999999999874 45 999999998
No 94
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.82 E-value=6.3e-23 Score=206.14 Aligned_cols=144 Identities=16% Similarity=0.192 Sum_probs=113.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcc---cHHHHHHc--C
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND---TIFHNIRY--G 556 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g---TIreNI~~--g 556 (728)
.++|+++||+|+||||||||+++|+|++.| ++++|+||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999875 69999999999854 67777654 3
Q ss_pred CCC-CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCE
Q 004826 557 RLS-ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPI 635 (728)
Q Consensus 557 ~~~-~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~I 635 (728)
.|. .+.+.+.++++..++.+++.. | +++...|+++ .|+||+++||+++.+|++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~------------------------~~~~~~~~~~~li~~~~l 114 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRS------------------------PRRTPVRPAPVVILEGIL 114 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEEC------------------------SSCEEECCCSEEEEESTT
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCC------------------------CCeEEeCCCcEEEEeehh
Confidence 332 345678888888777666544 3 4443333332 146899999999999999
Q ss_pred EEEeCcCcC-------CCHHHHHHHHHHHHHH--cCCCeEEEeccCc
Q 004826 636 LLCDEATSA-------LDSTTEAEILNALKSL--ANNRTSIFIAHRL 673 (728)
Q Consensus 636 LILDEaTSa-------LD~~tE~~I~~~L~~l--~~~~TvIvIaHRL 673 (728)
+++||||++ ||+.++..+.+.+++. .+|+|++.++|+.
T Consensus 115 l~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 115 VLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp TTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999 9999999999998775 3589999999984
No 95
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=1.7e-20 Score=214.18 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=71.7
Q ss_pred CCC-ChhHHHHHHHHHHhccCC--CEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCC
Q 004826 613 VSL-SGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENG 688 (728)
Q Consensus 613 ~~L-SGGQrQRIaIARALl~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G 688 (728)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||++..+..||+|+||++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 446 999999999999999999 9999999999999999999999999887799999999999999999999999654
No 96
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.80 E-value=4.9e-22 Score=205.05 Aligned_cols=169 Identities=11% Similarity=0.113 Sum_probs=108.3
Q ss_pred CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccH
Q 004826 470 TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (728)
Q Consensus 470 ~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTI 549 (728)
+++++|+|+||++++|+++||+||||||||||+++|++++ |.+.+| ..++.+++++||++...-|.
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCH
Confidence 3567999999999999999999999999999999999976 666554 46889999999975445699
Q ss_pred HHHHHcCCCC--------CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHH
Q 004826 550 FHNIRYGRLS--------ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQ 621 (728)
Q Consensus 550 reNI~~g~~~--------~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQ 621 (728)
.+|+.+.... .+.+++.+. ++.+.++.+..+. .||+||+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------L~~l~~~~~~~~~-----------------------~ls~g~~~ 123 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRT---------LKNIVEGKTVEVP-----------------------TYDFVTHS 123 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHH---------HHHHHTTCCEEEC-----------------------CEETTTTE
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHH---------HHHHHCCCCeecc-----------------------cccccccC
Confidence 9998653211 112222222 2222233333332 29999999
Q ss_pred HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHH-hh-cCeEEEEeCCEEEEEcChHHH
Q 004826 622 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA-MQ-CDEIIVLENGKVIEQGSHDDL 699 (728)
Q Consensus 622 RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti-~~-aD~IiVld~G~Ive~Gth~eL 699 (728)
|+++ ++++.+|+++|||||....|.. +.++ .+.|++++||...-+ +. ++.+ ++|+ +.+++
T Consensus 124 r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~ 185 (245)
T 2jeo_A 124 RLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQI 185 (245)
T ss_dssp ECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHH
T ss_pred ccCc-eEEecCCCEEEEeCccccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHH
Confidence 9998 6999999999999998877754 2333 478999999974333 33 3334 6675 67777
Q ss_pred hhc
Q 004826 700 LTK 702 (728)
Q Consensus 700 l~~ 702 (728)
+++
T Consensus 186 ~~~ 188 (245)
T 2jeo_A 186 LTQ 188 (245)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 97
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.79 E-value=4e-20 Score=219.32 Aligned_cols=180 Identities=18% Similarity=0.297 Sum_probs=132.1
Q ss_pred CCCccHHHHHHHHhcC---------CCCCCCEEEECCEeCCC---CCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCC
Q 004826 493 TSGSGKSTILRLLFRS---------FDTHSGSIRIDGQDICE---VTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (728)
Q Consensus 493 ~SGSGKSTL~~LL~gl---------y~p~~G~I~idG~di~~---i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~ 560 (728)
.|..||+++.+.+..- |.|..|+|+++|.+|.+ .+..++...+.-++|++..+.. +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~---~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHA---ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCST---TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhccc---chhhcch---
Confidence 5778999999887652 45688999999999998 5666666666666666553322 1222221
Q ss_pred CHHHHH-----HHHHHhccHHHHHhCCCcccch-hhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCC-
Q 004826 561 TEEEVY-----DAARRAAIHDTIMNFPAKYSTV-VGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP- 633 (728)
Q Consensus 561 sdeei~-----~A~~~a~l~~~I~~LP~G~dT~-vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p- 633 (728)
.+.++. ++.+.. +++..+ |++.. ++..-.. |||||||||+|||||..+|
T Consensus 344 ~~~~i~~~i~~ei~~rl---~~L~~v--GL~~l~l~r~~~t-------------------LSGGe~QRV~LA~aL~~~p~ 399 (842)
T 2vf7_A 344 EQAIALQRMAADLVKRL---DVLLHL--GLGYLGLDRSTPT-------------------LSPGELQRLRLATQLYSNLF 399 (842)
T ss_dssp SHHHHHHHHHHHHHHHH---HHHHHT--TCTTSBTTCBGGG-------------------SCHHHHHHHHHHHHTTTCCC
T ss_pred hhHHHHHHHHHHHHHHH---HHHHhC--CCCcCCccCCcCc-------------------CCHHHHHHHHHHHHHhhCCC
Confidence 122221 111221 123333 22211 2222223 9999999999999999999
Q ss_pred -CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------eCCEEEEEcChHHHhhc
Q 004826 634 -PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 634 -~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------d~G~Ive~Gth~eLl~~ 702 (728)
.+|||||||++||++.-+.+.+.|+++. .|.|+|+|+||+..++.||+|++| ++|+++..|+++++++.
T Consensus 400 ~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 400 GVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred CeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 5999999999999999999999988875 479999999999999999999999 79999999999999875
No 98
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.79 E-value=7.1e-19 Score=190.21 Aligned_cols=77 Identities=25% Similarity=0.387 Sum_probs=68.8
Q ss_pred CCChhHHH------HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEEe
Q 004826 614 SLSGGEKQ------RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 614 ~LSGGQrQ------RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVld 686 (728)
.||||||| |+++|||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||+......||+|++|+
T Consensus 248 ~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 248 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327 (339)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred HCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEEE
Confidence 49999999 7788999999999999999999999999999999998864 4689999999988888899999985
Q ss_pred --CCEE
Q 004826 687 --NGKV 690 (728)
Q Consensus 687 --~G~I 690 (728)
+|..
T Consensus 328 ~~~g~s 333 (339)
T 3qkt_A 328 LENGSS 333 (339)
T ss_dssp EETTEE
T ss_pred ecCCcc
Confidence 4543
No 99
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.79 E-value=3.3e-20 Score=212.19 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=123.5
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
++.+++++.|++-..+|.+ .|++|+.++|+|++|||||||++.++++..|. |+ +.+.++
T Consensus 258 ~~~~~l~~g~~~ld~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~ 316 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFA 316 (525)
T ss_dssp CCCCEECCSCHHHHHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEE
T ss_pred cccceeecChHHHHHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEE
Confidence 4667777777531234444 89999999999999999999999999998874 53 125677
Q ss_pred cCCCCCCcccHHHHHH-cCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCCh
Q 004826 539 PQDTVLFNDTIFHNIR-YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSG 617 (728)
Q Consensus 539 ~Qd~~LF~gTIreNI~-~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSG 617 (728)
+|++. .++++|.. +| .+-+++ ...++.++. ...-. .|||
T Consensus 317 ~ee~~---~~l~~~~~~~g---~~~~~~----~~~g~~~~~-----------~~~p~-------------------~LS~ 356 (525)
T 1tf7_A 317 YEESR---AQLLRNAYSWG---MDFEEM----ERQNLLKIV-----------CAYPE-------------------SAGL 356 (525)
T ss_dssp SSSCH---HHHHHHHHTTS---CCHHHH----HHTTSEEEC-----------CCCGG-------------------GSCH
T ss_pred EeCCH---HHHHHHHHHcC---CCHHHH----HhCCCEEEE-----------Eeccc-------------------cCCH
Confidence 78873 46666653 22 222221 111111111 11111 2999
Q ss_pred hHHHHHHHHHHhccCCCEEEEeCcCcCCCHH-----HHHHHHHHHHHHc-CCCeEEEeccCc----------hHHh-hcC
Q 004826 618 GEKQRVALARAFLKAPPILLCDEATSALDST-----TEAEILNALKSLA-NNRTSIFIAHRL----------TTAM-QCD 680 (728)
Q Consensus 618 GQrQRIaIARALl~~p~ILILDEaTSaLD~~-----tE~~I~~~L~~l~-~~~TvIvIaHRL----------sti~-~aD 680 (728)
||+||+++||++..+|++|||| ||++||.. ..+.+.+.++.+. .|.|+|+|+|.. ..+. .||
T Consensus 357 g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D 435 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITD 435 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCS
T ss_pred HHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeee
Confidence 9999999999999999999999 99999998 8888877776654 589999999998 5554 489
Q ss_pred eEEEEeCCE
Q 004826 681 EIIVLENGK 689 (728)
Q Consensus 681 ~IiVld~G~ 689 (728)
+|++|++|+
T Consensus 436 ~vi~L~~ge 444 (525)
T 1tf7_A 436 TIILLQYVE 444 (525)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 999999887
No 100
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.77 E-value=2.1e-20 Score=189.47 Aligned_cols=165 Identities=21% Similarity=0.235 Sum_probs=110.7
Q ss_pred EEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-------CCCEEEECCEeCCCCCHHHHhc
Q 004826 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-------HSGSIRIDGQDICEVTLESLRK 533 (728)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-------~~G~I~idG~di~~i~~~~lR~ 533 (728)
++++++.++.-..+|.+ -|++|+.++|+||||||||||++.|+|++.| ..|.|++++.+. .. ++
T Consensus 4 ~~~i~tG~~~LD~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~ 74 (231)
T 4a74_A 4 IGRISTGSKSLDKLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PE 74 (231)
T ss_dssp CCEECCSCHHHHHHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HH
T ss_pred CCccCCCChhHHhHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HH
Confidence 34555555432234443 6999999999999999999999999996655 445888888642 11 23
Q ss_pred ceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 534 ~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
.+++++|+..++..|+.||+.+..+. +..
T Consensus 75 ~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------------------------------------------- 103 (231)
T 4a74_A 75 RIREIAQNRGLDPDEVLKHIYVARAF-NSN-------------------------------------------------- 103 (231)
T ss_dssp HHHHHHHHTTSCHHHHHHTEEEEECC-SHH--------------------------------------------------
T ss_pred HHHHHHHHcCCCHHHHhhcEEEEecC-ChH--------------------------------------------------
Confidence 57777888888877888888775432 111
Q ss_pred CCChhHHHHHHHHHHhc-------cCCCEEEEeCcCcCCCHH-------HH-----HHHHHHHHHHc--CCCeEEEecc-
Q 004826 614 SLSGGEKQRVALARAFL-------KAPPILLCDEATSALDST-------TE-----AEILNALKSLA--NNRTSIFIAH- 671 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl-------~~p~ILILDEaTSaLD~~-------tE-----~~I~~~L~~l~--~~~TvIvIaH- 671 (728)
.|++.+..+++++ .+|++++|||||+.+|++ .+ ..+.+.|.++. .++|+|+|+|
T Consensus 104 ----~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 104 ----HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred ----HHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 1222233333333 389999999999999984 22 25666665543 4899999999
Q ss_pred ---CchHHhh-cCeEEEEeCCE
Q 004826 672 ---RLTTAMQ-CDEIIVLENGK 689 (728)
Q Consensus 672 ---RLsti~~-aD~IiVld~G~ 689 (728)
....+.+ ||++++|++|+
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 4444655 89999999763
No 101
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.76 E-value=1.2e-18 Score=194.47 Aligned_cols=74 Identities=31% Similarity=0.369 Sum_probs=68.6
Q ss_pred CCCChhHHHHHHHHHHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccCchHHhhcCeEEEEe
Q 004826 613 VSLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHRLsti~~aD~IiVld 686 (728)
..||||||||++|||+|. ++||+||||||||+||+.+...+.+.|+++.+ +.|+|+|||+......||+++++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 349999999999999999 68999999999999999999999999988754 689999999999999999999985
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.76 E-value=2.1e-19 Score=212.19 Aligned_cols=145 Identities=19% Similarity=0.193 Sum_probs=115.3
Q ss_pred CceEEEEEEEEEecC----CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-CCCCEEEECCEeCCCCCHHH
Q 004826 456 GGSIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRIDGQDICEVTLES 530 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~----~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-p~~G~I~idG~di~~i~~~~ 530 (728)
.+.|++++. ++|- ++++++|+||+ |+.++|+|||||||||++|+++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 346899987 4542 35899999999 99999999999999999999999874 6788752 1 1
Q ss_pred HhcceEEEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccC
Q 004826 531 LRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERR 609 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~ 609 (728)
.+..+++|+| +|.. |+.|||.. |
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~-------------------------------------g---------------- 635 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG-------------------------------------G---------------- 635 (765)
T ss_dssp SEEEECCCSE---EEEECCC-------------------------------------------C----------------
T ss_pred hccceeeHHH---hhccCCHHHHHHh-------------------------------------c----------------
Confidence 2457888887 5543 66665421 3
Q ss_pred CCCCCCChhHHHHHHHHHHh--ccCCCEEEEeCc---CcCCCHHHH-HHHHHHHHHHcCCCeEEEeccCchHHhhc
Q 004826 610 PLFVSLSGGEKQRVALARAF--LKAPPILLCDEA---TSALDSTTE-AEILNALKSLANNRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 610 ~~~~~LSGGQrQRIaIARAL--l~~p~ILILDEa---TSaLD~~tE-~~I~~~L~~l~~~~TvIvIaHRLsti~~a 679 (728)
+|+|++|++.+|+++ +.+|+++||||| ||+||..+. ..+.+.|.+ .++|+|++||..+....|
T Consensus 636 -----~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 636 -----KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp -----CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred -----ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 899999999999999 999999999999 999999886 578888877 689999999998876655
No 103
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.75 E-value=2.5e-18 Score=206.45 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=122.1
Q ss_pred ceEEEEEEEEEecC----CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHH--------hcCCCCCCCEEEECCEeCC
Q 004826 457 GSIQFDNVHFSYLT----ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLL--------FRSFDTHSGSIRIDGQDIC 524 (728)
Q Consensus 457 g~I~f~nVsF~Y~~----~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL--------~gly~p~~G~I~idG~di~ 524 (728)
+.|++++...-+-. ++.|++|++|++++|+.++|+|||||||||+++.+ .|.|-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 46888876543322 34799999999999999999999999999999999 67666655432
Q ss_pred CCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhh
Q 004826 525 EVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQK 604 (728)
Q Consensus 525 ~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~ 604 (728)
++.+. .+|. .+|. .+.+ .+|
T Consensus 702 ----------~~~~d---~i~~-------~ig~-----------------~d~l------------~~~----------- 721 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVGA-----------------GDSQ------------LKG----------- 721 (934)
T ss_dssp ----------EECCS---EEEE-------ECC------------------------------------------------
T ss_pred ----------chHHH---HHHH-------hcCc-----------------hhhH------------HHh-----------
Confidence 11110 0111 0110 0000 112
Q ss_pred hhccCCCCCCCChhHHHHHHHHHHh--ccCCCEEEEeCcCcCCCHHHHHHHH-HHHHHHc--CCCeEEEeccCchHHhhc
Q 004826 605 KLERRPLFVSLSGGEKQRVALARAF--LKAPPILLCDEATSALDSTTEAEIL-NALKSLA--NNRTSIFIAHRLTTAMQC 679 (728)
Q Consensus 605 ~~~~~~~~~~LSGGQrQRIaIARAL--l~~p~ILILDEaTSaLD~~tE~~I~-~~L~~l~--~~~TvIvIaHRLsti~~a 679 (728)
+|+|++|+..+|+++ +.+|+++||||||+++|+.....|. ..++.+. .++|+|++||.......|
T Consensus 722 ----------lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~la 791 (934)
T 3thx_A 722 ----------VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALA 791 (934)
T ss_dssp -----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGG
T ss_pred ----------HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHh
Confidence 888888888888888 9999999999999999999887774 4445543 389999999999988999
Q ss_pred CeEEEEeCCEEEEEcChHHH
Q 004826 680 DEIIVLENGKVIEQGSHDDL 699 (728)
Q Consensus 680 D~IiVld~G~Ive~Gth~eL 699 (728)
|++..+++|+++..|+.+++
T Consensus 792 d~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 792 NQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp GTCTTEEEEEEEEEEETTEE
T ss_pred cccceeEeeEEEEEecCCcE
Confidence 99999999999988887765
No 104
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.75 E-value=2.3e-19 Score=213.11 Aligned_cols=88 Identities=27% Similarity=0.456 Sum_probs=83.3
Q ss_pred CChhHHHHHHHHHHhccCC--CEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------
Q 004826 615 LSGGEKQRVALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------ 685 (728)
|||||||||+||+||..+| ++|||||||++||+..-+.+.+.|+++. .|.|+|+|+||+..++.||+|++|
T Consensus 505 LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~LgpgaG~ 584 (972)
T 2r6f_A 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIGPGAGI 584 (972)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHSCSEEEEECSSSGG
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEeCCCccC
Confidence 9999999999999999985 9999999999999999999999998876 479999999999999999999999
Q ss_pred eCCEEEEEcChHHHhhc
Q 004826 686 ENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~ 702 (728)
++|+|+.+|+++++++.
T Consensus 585 ~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 585 HGGEVVAAGTPEEVMND 601 (972)
T ss_dssp GCCSEEEEECTTTTTTC
T ss_pred CCCEEEEecCHHHHHhh
Confidence 79999999999999874
No 105
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.75 E-value=3.8e-20 Score=200.87 Aligned_cols=181 Identities=19% Similarity=0.208 Sum_probs=121.0
Q ss_pred EEEEEEecCCceeeeee-eEEEeCCcEEEEECCCCccHHHHHHHHhcCC--CCCC----CE-EEECCEeCCCCCHHHHhc
Q 004826 462 DNVHFSYLTERKILDGV-SFVVPAGKSVAIVGTSGSGKSTILRLLFRSF--DTHS----GS-IRIDGQDICEVTLESLRK 533 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~i-sl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly--~p~~----G~-I~idG~di~~i~~~~lR~ 533 (728)
+.+++.++ .|+++ ++.|++|+.++|+||+|||||||++.+++.+ +|++ |. |+||+.+.- .++
T Consensus 111 ~~isTG~~----~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~ 180 (349)
T 1pzn_A 111 GRISTGSK----SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPE 180 (349)
T ss_dssp CEECCSCH----HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHH
T ss_pred CeecCCCH----HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHH
Confidence 34555553 45554 5799999999999999999999999999999 6776 67 999997651 256
Q ss_pred ceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 534 SIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 534 ~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
++++++|++.++..++.|||.+..+ .+.++..+.++.+ ...+.+
T Consensus 181 ~i~~i~q~~~~~~~~v~~ni~~~~~-~~~~~~~~~l~~~--~~~~~~--------------------------------- 224 (349)
T 1pzn_A 181 RIREIAQNRGLDPDEVLKHIYVARA-FNSNHQMLLVQQA--EDKIKE--------------------------------- 224 (349)
T ss_dssp HHHHHHHTTTCCHHHHGGGEEEEEC-CSHHHHHHHHHHH--HHHHHH---------------------------------
T ss_pred HHHHHHHHcCCCHHHHhhCEEEEec-CChHHHHHHHHHH--HHHHHH---------------------------------
Confidence 7889999999998999999988753 2222222222111 111111
Q ss_pred CCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHH-------H-----HHHHHHHHHHc--CCCeEEEeccCchHHhh-
Q 004826 614 SLSGGEKQRVALARAFLKAPPILLCDEATSALDSTT-------E-----AEILNALKSLA--NNRTSIFIAHRLTTAMQ- 678 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~t-------E-----~~I~~~L~~l~--~~~TvIvIaHRLsti~~- 678 (728)
||||| .+|++||+||||+.+|++. + ..+...|.++. .++|+|+++|..+....
T Consensus 225 -lS~G~-----------~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~ 292 (349)
T 1pzn_A 225 -LLNTD-----------RPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAF 292 (349)
T ss_dssp -SSSSS-----------SCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC------
T ss_pred -hcccc-----------CCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccc
Confidence 55554 7899999999999999963 2 34444555543 48999999998875532
Q ss_pred cCeEEEEeCCEEEEEcChHHHh
Q 004826 679 CDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 679 aD~IiVld~G~Ive~Gth~eLl 700 (728)
++.+.+...|++++++.|..|.
T Consensus 293 ~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 293 FGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp ---------CCCCCTTCSEEEE
T ss_pred cCCccccCCcceEeecCcEEEE
Confidence 3456788899999998887775
No 106
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.75 E-value=2.6e-20 Score=186.10 Aligned_cols=169 Identities=18% Similarity=0.242 Sum_probs=103.4
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC-----CCCCCEEEE-------CCEeCC--
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF-----DTHSGSIRI-------DGQDIC-- 524 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly-----~p~~G~I~i-------dG~di~-- 524 (728)
|+++|++|+|+ .++|++ |++++|++++|||++|||||||++.|+|.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 78999999996 368888 899999999999999999999999999998 899998765 233222
Q ss_pred -CCC--------HHHHhcceEEEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhcccc
Q 004826 525 -EVT--------LESLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (728)
Q Consensus 525 -~i~--------~~~lR~~Ia~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~ 594 (728)
.+. .+.+++.++++.|+...+++ ++..|+..+.. ..++++.+.++.. .+|. -.++..--
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~-------~~~~---~~v~nK~D 148 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWAVDS-------NIAV---LVLLTKAD 148 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHHT-------TCCE---EEEEECGG
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHHHHc-------CCCe---EEEEeccc
Confidence 111 13455555566654433332 33333333211 1122333333221 1221 11233222
Q ss_pred ccchhHHHhhhhccCCCCCCCChhHHHH-HHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc
Q 004826 595 KGRSLLYIQKKLERRPLFVSLSGGEKQR-VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLA 661 (728)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~LSGGQrQR-IaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 661 (728)
. +|+||||| +..||+++++|+++++||||||+|.++-..+++.|.++.
T Consensus 149 ~-------------------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 149 K-------------------LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp G-------------------SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred C-------------------CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 3 89999999 899999999999999999999999999999999988754
No 107
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.74 E-value=1.7e-20 Score=217.70 Aligned_cols=189 Identities=18% Similarity=0.272 Sum_probs=123.3
Q ss_pred eEEEEEEEEEecCC-ceeeeee----------eEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCC
Q 004826 458 SIQFDNVHFSYLTE-RKILDGV----------SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICE 525 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~-~~vL~~i----------sl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~ 525 (728)
.|+++|+++.|+.. +++|+.+ +|+++. +||||+||||||||+++|+|++.| ++|.|.++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 58999999999742 4555544 377765 999999999999999999999988 79999999998632
Q ss_pred ---CCHHHHhcceEEEcCCCCCCc-ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHH
Q 004826 526 ---VTLESLRKSIGVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLY 601 (728)
Q Consensus 526 ---i~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~ 601 (728)
-....+|+.|+||+|++.+++ .|++|||.++. .. + +..+..
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~-----------~~~~~~------ 131 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------I-----------AGEGMG------ 131 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------H-----------HCSSSC------
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------h-----------cCCccc------
Confidence 224578999999999998875 59999986531 00 0 001111
Q ss_pred HhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCc------CcCCCHHHHHHHHHHHHHHc---CCCeEEEeccC
Q 004826 602 IQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEA------TSALDSTTEAEILNALKSLA---NNRTSIFIAHR 672 (728)
Q Consensus 602 ~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEa------TSaLD~~tE~~I~~~L~~l~---~~~TvIvIaHR 672 (728)
+| ++++.++.+...+|+++++||| |++||+.+.+.+.+.++++. .+-++++++|.
T Consensus 132 -------------~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~ 195 (608)
T 3szr_A 132 -------------IS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSN 195 (608)
T ss_dssp -------------CC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESS
T ss_pred -------------cc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEecc
Confidence 22 2344555555678999999999 99999999999999998853 24567788998
Q ss_pred chH--------Hhhc-----CeEEEEeCCEEEEEcChHHHh
Q 004826 673 LTT--------AMQC-----DEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 673 Lst--------i~~a-----D~IiVld~G~Ive~Gth~eLl 700 (728)
+.. ++.. ..|+|+.++.+++.|+.++++
T Consensus 196 ~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 196 VDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp SCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred chhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHH
Confidence 752 2332 568999999999999876554
No 108
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.74 E-value=4.8e-18 Score=161.57 Aligned_cols=77 Identities=26% Similarity=0.382 Sum_probs=69.5
Q ss_pred CCChhHHHHHHHH------HHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE-
Q 004826 614 SLSGGEKQRVALA------RAFLKAPPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL- 685 (728)
Q Consensus 614 ~LSGGQrQRIaIA------RALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl- 685 (728)
+||||||||++|| |||+.+|++|||||||++||+++.+.+.+.|+++. .++|+|+|||++.....||+|++|
T Consensus 57 ~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~ii~l~ 136 (148)
T 1f2t_B 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 136 (148)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEEE
T ss_pred HCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEEEEEE
Confidence 3999999999876 99999999999999999999999999999999874 479999999999777789999999
Q ss_pred -eCCEE
Q 004826 686 -ENGKV 690 (728)
Q Consensus 686 -d~G~I 690 (728)
++|..
T Consensus 137 ~~~g~s 142 (148)
T 1f2t_B 137 LENGSS 142 (148)
T ss_dssp EETTEE
T ss_pred cCCCeE
Confidence 56643
No 109
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.74 E-value=1e-20 Score=199.93 Aligned_cols=130 Identities=12% Similarity=0.063 Sum_probs=96.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCC---
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS--- 559 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~--- 559 (728)
+++.+|||+|+||||||||+++|.+++++. | . . ++.+.+|+||.++|+.++++|+.++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999864 2 0 1 5567777999999999999999876421
Q ss_pred CCHHHHHHHHHHhccHHHHHhCCCcccchhh------ccccccchhHHHhhhhccCCCCCCCChhHHHHHHHH--HHhcc
Q 004826 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVG------ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALA--RAFLK 631 (728)
Q Consensus 560 ~sdeei~~A~~~a~l~~~I~~LP~G~dT~vg------E~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIA--RALl~ 631 (728)
.+....-++.+.+.+.+++..+++|++|..+ ..+.. +||||+||+++| |++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~-------------------~sgGq~~R~~~a~~~~~-- 151 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKS-------------------QFKGEGDRCPTGQKIKL-- 151 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETT-------------------HHHHTCEECSSCEEEES--
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccc-------------------cCCccccccccccceEc--
Confidence 0000011223345678899999999988643 34444 999999999998 666
Q ss_pred CCCEEEEeCcCcCCCHHH
Q 004826 632 APPILLCDEATSALDSTT 649 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~t 649 (728)
+|+|||+||+|+++|+++
T Consensus 152 ~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 152 PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SCSEEEEEESSTTCCCCC
T ss_pred CCCEEEEeCccccCCccc
Confidence 999999999999999865
No 110
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.74 E-value=5e-19 Score=188.20 Aligned_cols=150 Identities=20% Similarity=0.221 Sum_probs=104.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHH--hcceEEEcCCCCCCc-ccHHHHHHc
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESL--RKSIGVVPQDTVLFN-DTIFHNIRY 555 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~----~~~l--R~~Ia~V~Qd~~LF~-gTIreNI~~ 555 (728)
.+|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..|++|+|++.++. .|++||+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 379999999999999999999999999999999999999987654 2233 467999999998775 488888865
Q ss_pred CCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCC-
Q 004826 556 GRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPP- 634 (728)
Q Consensus 556 g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~- 634 (728)
+. ..+.+..+-..+...+.. -.. ++..++||.+||||+..+|+
T Consensus 180 ~~-------------~~~~d~~llDt~G~~~~~----~~~-------------------~~eLs~~r~~iaRal~~~P~~ 223 (304)
T 1rj9_A 180 MK-------------ARGYDLLFVDTAGRLHTK----HNL-------------------MEELKKVKRAIAKADPEEPKE 223 (304)
T ss_dssp HH-------------HHTCSEEEECCCCCCTTC----HHH-------------------HHHHHHHHHHHHHHCTTCCSE
T ss_pred HH-------------hCCCCEEEecCCCCCCch----HHH-------------------HHHHHHHHHHHHHhhcCCCCe
Confidence 31 111111121222211110 001 45667999999999999999
Q ss_pred -EEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEeccCchH
Q 004826 635 -ILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAHRLTT 675 (728)
Q Consensus 635 -ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaHRLst 675 (728)
+|+|| |+++.| +.+.++++. .+.|+|++||...+
T Consensus 224 ~lLvLD-a~t~~~------~~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 224 VWLVLD-AVTGQN------GLEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp EEEEEE-TTBCTH------HHHHHHHHHHHHCCSEEEEECTTSS
T ss_pred EEEEEc-HHHHHH------HHHHHHHHHHHcCCcEEEEECCccc
Confidence 56666 555543 333333322 37899999997554
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.73 E-value=1.3e-17 Score=198.83 Aligned_cols=88 Identities=28% Similarity=0.450 Sum_probs=83.3
Q ss_pred CChhHHHHHHHHHHhccC--CCEEEEeCcCcCCCHHHHHHHHHHHHHHc-CCCeEEEeccCchHHhhcCeEEEE------
Q 004826 615 LSGGEKQRVALARAFLKA--PPILLCDEATSALDSTTEAEILNALKSLA-NNRTSIFIAHRLTTAMQCDEIIVL------ 685 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~--p~ILILDEaTSaLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti~~aD~IiVl------ 685 (728)
|||||||||+||+||..+ |++|||||||++||+..-+.+.+.|+++. .|.|+|+|+||+..++.||+|++|
T Consensus 522 LSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~ 601 (993)
T 2ygr_A 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGE 601 (993)
T ss_dssp CCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGG
T ss_pred CCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCcccc
Confidence 999999999999999999 58999999999999999999999998875 589999999999999999999999
Q ss_pred eCCEEEEEcChHHHhhc
Q 004826 686 ENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 686 d~G~Ive~Gth~eLl~~ 702 (728)
++|+|+..|+++++++.
T Consensus 602 ~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 602 HGGRIVHSGPYDELLRN 618 (993)
T ss_dssp GCCSCCEEECHHHHHHC
T ss_pred CCCEEEEeeCHHHhhhh
Confidence 69999999999999875
No 112
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.73 E-value=2.2e-19 Score=184.30 Aligned_cols=181 Identities=15% Similarity=0.096 Sum_probs=111.5
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh--cCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF--RSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~--gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
.+++++++++|+.-..+|.+ .|++|+.++|+||||||||||++.|+ ++.++.+|.+.+++.+..+ .....++.+
T Consensus 6 ~~~~~~i~tg~~~lD~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp --CCCEECCSCTTTGGGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred ccccceeecCCHhHHHHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 35667777777643344544 69999999999999999999999999 7757788888888754221 122334567
Q ss_pred EEEcCCCCCCc-ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCC
Q 004826 536 GVVPQDTVLFN-DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVS 614 (728)
Q Consensus 536 a~V~Qd~~LF~-gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~ 614 (728)
++++|+...+. -++.++....... ..++... ... .
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------------------~~~----~------------------- 117 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGL-PSEEKFV--------------------LED----R------------------- 117 (251)
T ss_dssp TCCHHHHHHTTSEEEEC---------------------------------------------------------------
T ss_pred CCChHHHhhcCCEEEEEcccccccc-cccccee--------------------ccC----c-------------------
Confidence 88777653322 1222222111000 0000000 000 0
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCC-----HHHHHHHHHHHHHHc-CCCeEEEeccCchHH----------hh
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALD-----STTEAEILNALKSLA-NNRTSIFIAHRLTTA----------MQ 678 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD-----~~tE~~I~~~L~~l~-~~~TvIvIaHRLsti----------~~ 678 (728)
.+-++.+....+..-..+|++++|||||+.+| +...+.+.+-++.+. .|+|+|+++|.++.+ ..
T Consensus 118 ~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~ 197 (251)
T 2ehv_A 118 FNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEF 197 (251)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGG
T ss_pred ccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhE
Confidence 23344444444444457999999999999997 566666777666553 589999999999886 45
Q ss_pred c-CeEEEEe
Q 004826 679 C-DEIIVLE 686 (728)
Q Consensus 679 a-D~IiVld 686 (728)
| |+|++|+
T Consensus 198 ~aD~vi~l~ 206 (251)
T 2ehv_A 198 IARGVIVLD 206 (251)
T ss_dssp GCSEEEEEE
T ss_pred eeeEEEEEe
Confidence 7 9999995
No 113
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=1.8e-19 Score=199.23 Aligned_cols=166 Identities=18% Similarity=0.195 Sum_probs=104.4
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIG 536 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia 536 (728)
+.|+++||+++|+ ++++++|+||+| +|||+||||||||++.|+|+..|..| .+|.++... ....++.++
T Consensus 10 ~~l~~~~l~~~y~-~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~-~t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVY-RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIK-KTVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTT-TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeEC-CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCc-cceeeeeEE
Confidence 4699999999996 467999999998 99999999999999999999887666 244433321 112246799
Q ss_pred EEcCCCCCC-cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC
Q 004826 537 VVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL 615 (728)
Q Consensus 537 ~V~Qd~~LF-~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L 615 (728)
+++|++.++ .-||.||+.++.. .+.++.|+. +.++|.. . +
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~~-----i~~~i~~--------------~-------------------~ 119 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQP-----VIDYIDS--------------K-------------------F 119 (418)
T ss_dssp CC------CEEEEEEECC------------CHH-----HHHHHHH--------------H-------------------H
T ss_pred EEEecCCcccceeeeechhhhhh-ccchhhHHH-----HHHHHHH--------------H-------------------H
Confidence 999998877 6799999998864 232232322 2233321 2 6
Q ss_pred ChhHHHHHHHHHHhccCCC---EEEEeCcC-cCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHH
Q 004826 616 SGGEKQRVALARAFLKAPP---ILLCDEAT-SALDSTTEAEILNALKSLANNRTSIFIAHRLTTA 676 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~---ILILDEaT-SaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti 676 (728)
+.+.+||++||||++++|+ +|++|||| ++||+... .+++.| ..+.++|+|.|...++
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~L---~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFMKRL---HEKVNIIPLIAKADTL 180 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHHHHH---TTTSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHHHHH---hccCcEEEEEEcccCc
Confidence 6777899999999999999 99999999 69998763 344444 4578899999887654
No 114
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=8.3e-19 Score=186.54 Aligned_cols=165 Identities=18% Similarity=0.243 Sum_probs=80.1
Q ss_pred EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC-CCCCCCEEEECCEeCCCCCHHHHhcceEEEcC
Q 004826 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS-FDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl-y~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q 540 (728)
+|+++.|. ++.++++++|+| +|||+||+|||||++.|+|. ..|++| |.++|.++.. +. -++.+++++|
T Consensus 2 ~~l~~~~~-~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceEC-CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEec
Confidence 47888885 467999999988 99999999999999999998 889999 9999987754 21 1467899999
Q ss_pred CCCCC-cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhH
Q 004826 541 DTVLF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE 619 (728)
Q Consensus 541 d~~LF-~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQ 619 (728)
+..++ .-||.||..++... ..++-++ .+.+.+.. -++. |..+ +||||
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~-~~~e~~~-----~l~~~l~~---~~~~-------------~~~~----------~sgg~ 118 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAI-NCRDCFK-----TIISYIDE---QFER-------------YLHD----------ESGLN 118 (301)
T ss_dssp ---CCEEEEEEEEC------------CT-----THHHHHHH---HHHH-------------HHHH----------HTSSC
T ss_pred CCCcccCcchhhhhhhhhhc-CcHHHHH-----HHHHHHHH---HHHH-------------HHHH----------hCHHh
Confidence 87654 56999998887431 1111111 11111111 0111 1111 99999
Q ss_pred HHHHHHHHHhccCCCEEEEeCcCcC-CCHHHHHHHHHHHHHHcCCCeEEEeccCchH
Q 004826 620 KQRVALARAFLKAPPILLCDEATSA-LDSTTEAEILNALKSLANNRTSIFIAHRLTT 675 (728)
Q Consensus 620 rQRIaIARALl~~p~ILILDEaTSa-LD~~tE~~I~~~L~~l~~~~TvIvIaHRLst 675 (728)
|||+++|||+. +|++||||++ ||+... .+.+.+.+ ..+.++|+..|.+.+
T Consensus 119 rqrv~~ara~~----ll~ldePt~~~Ld~~~~-~~l~~l~~-~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 119 RRHIIDNRVHC----CFYFISPFGHGLKPLDV-AFMKAIHN-KVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTCCCCCCCE----EEEEECSSSSSCCHHHH-HHHHHHTT-TSCEEEEECCGGGSC
T ss_pred hhhhhhhhhhh----eeeeecCcccCCCHHHH-HHHHHHHh-cCCEEEEEEeCCCCC
Confidence 99999999986 9999999985 999874 33333321 125677777898754
No 115
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.69 E-value=4.6e-18 Score=184.50 Aligned_cols=146 Identities=22% Similarity=0.207 Sum_probs=105.7
Q ss_pred EEEEEEecC-CceeeeeeeE-------EEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-CCEEEECCEeCCCCCHHHHh
Q 004826 462 DNVHFSYLT-ERKILDGVSF-------VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SGSIRIDGQDICEVTLESLR 532 (728)
Q Consensus 462 ~nVsF~Y~~-~~~vL~~isl-------~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-~G~I~idG~di~~i~~~~lR 532 (728)
.+++|+|.+ ..+.|+++.+ .+++|+.++|+|||||||||++++|+|+++|+ +|.|...+.++ ++. ++
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 578888864 4467777776 78899999999999999999999999999997 56664433222 111 11
Q ss_pred cceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 533 KSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 533 ~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
...++++|. .++...
T Consensus 168 ~~~~~v~q~----------------------------------------------~~~~~~------------------- 182 (356)
T 3jvv_A 168 SKKCLVNQR----------------------------------------------EVHRDT------------------- 182 (356)
T ss_dssp CSSSEEEEE----------------------------------------------EBTTTB-------------------
T ss_pred ccccceeee----------------------------------------------eecccc-------------------
Confidence 122222222 122221
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCC
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENG 688 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G 688 (728)
++-.+ +|||||..+|++|+||||| |.++.+.+.++. ..|+|+|+++|..+.+..+||+++|..|
T Consensus 183 --~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~---~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 183 --LGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA---ETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp --SCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH---HTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred --CCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH---hcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 33332 8999999999999999999 788766655553 3589999999999999999999988543
No 116
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.69 E-value=6.3e-17 Score=157.84 Aligned_cols=77 Identities=31% Similarity=0.431 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHHHHhc----cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEE--eC
Q 004826 614 SLSGGEKQRVALARAFL----KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL--EN 687 (728)
Q Consensus 614 ~LSGGQrQRIaIARALl----~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVl--d~ 687 (728)
.||||||||++|||||. ++||++||||||++||+.+++.+.+.|+++.++.++|+|||+..+...||+|+++ ++
T Consensus 64 ~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~~~ 143 (173)
T 3kta_B 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSMRD 143 (173)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEET
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEecC
Confidence 39999999999999995 6679999999999999999999999999988889999999999999999999855 57
Q ss_pred CEE
Q 004826 688 GKV 690 (728)
Q Consensus 688 G~I 690 (728)
|..
T Consensus 144 g~s 146 (173)
T 3kta_B 144 GVS 146 (173)
T ss_dssp TEE
T ss_pred CEE
Confidence 764
No 117
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.67 E-value=3e-20 Score=186.80 Aligned_cols=135 Identities=19% Similarity=0.190 Sum_probs=102.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcC-CCCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYG-RLSA 560 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g-~~~~ 560 (728)
.++|+++||+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+..+|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999986 5 368999999999999888886421 1111
Q ss_pred CHHHHHHHHHHhccHHHHHhCCCc--ccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHH-HHhccCCCEEE
Q 004826 561 TEEEVYDAARRAAIHDTIMNFPAK--YSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALA-RAFLKAPPILL 637 (728)
Q Consensus 561 sdeei~~A~~~a~l~~~I~~LP~G--~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIA-RALl~~p~ILI 637 (728)
..+.+...+.+++..|+.| +++++.++|.. +|+||+||+++| |+++.++++++
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~-------------------~~~g~~~~v~~~~~~~i~eg~~~l 135 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARD-------------------IAIAGAAEVGPECRVAIIEGNYLL 135 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTT-------------------EEEEEEEEECTTCCEEEEEESSTT
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCcccc-------------------CCCCCceEEcCCCcEEEECCceec
Confidence 1122223345566666666 88899999988 999999999999 99999999999
Q ss_pred EeCcC-----------cCCCHHHHHHHHHHHHH
Q 004826 638 CDEAT-----------SALDSTTEAEILNALKS 659 (728)
Q Consensus 638 LDEaT-----------SaLD~~tE~~I~~~L~~ 659 (728)
+|||. .-||...|..+...+++
T Consensus 136 ~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 136 FDAPGWRDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp BCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred cCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 99985 23455555555444443
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.66 E-value=1.6e-17 Score=168.05 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=111.8
Q ss_pred CceeeeeeeE-EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhc---ceEEEcCCCCCCc
Q 004826 471 ERKILDGVSF-VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK---SIGVVPQDTVLFN 546 (728)
Q Consensus 471 ~~~vL~~isl-~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~---~Ia~V~Qd~~LF~ 546 (728)
+-+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.|.+.+.+. +.+.+++ .+++.+|+...
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 82 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE-- 82 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT--
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh--
Confidence 4467888887 8999999999999999999999999998888888888765432 2222222 22222222110
Q ss_pred ccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHH
Q 004826 547 DTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALA 626 (728)
Q Consensus 547 gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIA 626 (728)
+++. +++.....++ .... ....|.+|.++...+
T Consensus 83 ----~~~~----------------------~~~~~~~~~~---~~~~------------------~~~~~~~~~~~~~~~ 115 (235)
T 2w0m_A 83 ----KKLI----------------------IIDALMKEKE---DQWS------------------LVNLTPEELVNKVIE 115 (235)
T ss_dssp ----TTEE----------------------EEECCC-------CTTB------------------CSSCCHHHHHHHHHH
T ss_pred ----CCEE----------------------EEeccccccC---ceee------------------ecCCCHHHHHHHHHH
Confidence 0100 0111110000 0000 011589999988888
Q ss_pred HHhccCCC--EEEEeCcCcCC--CHHHHHHHHHHHHHHc--CCCeEEEeccCc--------hHHh-hcCeEEEEeCC
Q 004826 627 RAFLKAPP--ILLCDEATSAL--DSTTEAEILNALKSLA--NNRTSIFIAHRL--------TTAM-QCDEIIVLENG 688 (728)
Q Consensus 627 RALl~~p~--ILILDEaTSaL--D~~tE~~I~~~L~~l~--~~~TvIvIaHRL--------sti~-~aD~IiVld~G 688 (728)
.+...+|+ ++|+||||+.+ |+...+.+.+.|+++. .++|+|+++|.. ..+. .||+|++|++.
T Consensus 116 ~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 116 AKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 88778999 99999999988 9988888888887763 479999999998 3344 59999999864
No 119
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.64 E-value=1.6e-16 Score=190.43 Aligned_cols=158 Identities=14% Similarity=0.198 Sum_probs=104.1
Q ss_pred ceEEEEEEEEEe-----c-CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH
Q 004826 457 GSIQFDNVHFSY-----L-TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES 530 (728)
Q Consensus 457 g~I~f~nVsF~Y-----~-~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~ 530 (728)
+.|++++..--. + +++.|++|+||++++|+.++|+|||||||||+++.+.++.-
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-------------------- 698 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-------------------- 698 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--------------------
Confidence 367777643211 0 14679999999999999999999999999999999864310
Q ss_pred HhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 531 LRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 531 lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
+.+.-.+||++..-+ ++.++| +. ..++.|.+. .|.
T Consensus 699 ~aq~g~~vpa~~~~i--~~~d~i-~~--------------~ig~~d~l~------------~~~---------------- 733 (918)
T 3thx_B 699 MAQIGSYVPAEEATI--GIVDGI-FT--------------RMGAADNIY------------KGR---------------- 733 (918)
T ss_dssp HHHHTCCBSSSEEEE--ECCSEE-EE--------------EC--------------------------------------
T ss_pred HhhcCccccchhhhh--hHHHHH-HH--------------hCChHHHHH------------HhH----------------
Confidence 111112333322100 000000 00 000111110 111
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHH-HHHHHHc--CCCeEEEeccCchHHhhcCeE
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEIL-NALKSLA--NNRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~-~~L~~l~--~~~TvIvIaHRLsti~~aD~I 682 (728)
..+|+|++|+..|+|+ +.+|+++||||||++||+.....|. ..++.+. .++|+|++||.++....||+.
T Consensus 734 --stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 734 --STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp --CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred --HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 1299999999999999 8999999999999999999888887 4455542 489999999999888777654
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.63 E-value=1.3e-17 Score=164.36 Aligned_cols=161 Identities=14% Similarity=0.067 Sum_probs=100.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~ 560 (728)
.+++|+.++|+|+||||||||+++|++. |..|.|.+||.++.+... -++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 5789999999999999999999999998 789999999977543221 1345788888765 5678888886531
Q ss_pred CHHHHHHHHHHhccHHHHHhCCC--cccchh--hccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEE
Q 004826 561 TEEEVYDAARRAAIHDTIMNFPA--KYSTVV--GERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPIL 636 (728)
Q Consensus 561 sdeei~~A~~~a~l~~~I~~LP~--G~dT~v--gE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~IL 636 (728)
.. .. ..+-...++.+.. +++..- +... ..+|+||+||+++||++.++|+++
T Consensus 77 ---~~--~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 77 ---GR--YA-KEGYFVILDGVVRPDWLPAFTALARPL-------------------HYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp ---HH--HH-HTSCEEEECSCCCTTTTHHHHTTCSCE-------------------EEEEEECCHHHHHHHHHTTCTTSC
T ss_pred ---HH--Hh-ccCCeEEEeccCcHHHHHHHHhcCCCe-------------------EEEEecCCHHHHHHHHHhcCCCcc
Confidence 11 01 1111111111110 111000 1111 239999999999999999999987
Q ss_pred EEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeE
Q 004826 637 LCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 637 ILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~I 682 (728)
+|++..+.+.+.++.+....++++.++..+.-+.+|+|
T Consensus 132 --------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 132 --------SDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp --------CCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred --------CCHHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHH
Confidence 58777777776665443222344445443333334433
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.63 E-value=2.8e-18 Score=183.95 Aligned_cols=151 Identities=15% Similarity=0.179 Sum_probs=112.6
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC--------CCCCCEEEECCEeCCCCC---------------HHHHhcceEEE---c
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF--------DTHSGSIRIDGQDICEVT---------------LESLRKSIGVV---P 539 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly--------~p~~G~I~idG~di~~i~---------------~~~lR~~Ia~V---~ 539 (728)
+.++|+|+||||||||++.|+|++ .|+.|+|.|||.++.+.+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 889999999999998764 45788889988 7
Q ss_pred CCCC-CCcccHHHHHHcCCCCCCHHHHHHHH-------HHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCC
Q 004826 540 QDTV-LFNDTIFHNIRYGRLSATEEEVYDAA-------RRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPL 611 (728)
Q Consensus 540 Qd~~-LF~gTIreNI~~g~~~~sdeei~~A~-------~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~ 611 (728)
|++. .|+.++.||+.+++|. .+.+.. +...+.+ .-|.++-.. ......
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~~~~~~~~~l~~--------~l~~vd~~~---~~~~~~--------- 140 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPG----PIIQTFFSHEVLCQRYLLDG--------VIALVDAVH---ADEQMN--------- 140 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHH----HHHHHHHHSHHHHHHEEEEE--------EEEEEETTT---HHHHHH---------
T ss_pred hcCCCCCCEEEEeCCCCCCHH----HHHHHHhcCccccCeEEECC--------EEEEEEHHH---HHHHHh---------
Confidence 8876 4789999999988652 222221 1112211 112222111 000011
Q ss_pred CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCc
Q 004826 612 FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRL 673 (728)
Q Consensus 612 ~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRL 673 (728)
+|||||+||...+|+++.+|+++ ||| +.+.+.|+++.++.|+++++|+.
T Consensus 141 --~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 141 --QFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp --HCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred --hchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 29999999999999999999987 888 67788888877889999999974
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.62 E-value=2.5e-16 Score=158.24 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=97.0
Q ss_pred eeeeeeeE-EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 004826 473 KILDGVSF-VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (728)
Q Consensus 473 ~vL~~isl-~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 551 (728)
+.|+++.. .+++|+.++|+|++|||||||++.+++ .+..+.++++..+ ..+...+ ++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~------------------~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL------------------VQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH------------------HH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH------------------HH
Confidence 45666654 699999999999999999999999999 3333444443321 1112221 11
Q ss_pred HHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh--HHHHHHHHHHh
Q 004826 552 NIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG--EKQRVALARAF 629 (728)
Q Consensus 552 NI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG--QrQRIaIARAL 629 (728)
.... ...+.+++ .+.+. + .. +|++ |+|+++.+|++
T Consensus 65 ~~~~--~~~~~~~~------------~~~~~------~----~~-------------------~~~~~~~~~~~~~~~~l 101 (220)
T 2cvh_A 65 MAET--RGLNPEEA------------LSRFI------L----FT-------------------PSDFKEQRRVIGSLKKT 101 (220)
T ss_dssp HHHT--TTCCHHHH------------HHHEE------E----EC-------------------CTTTSHHHHHHHHHHHH
T ss_pred HHHh--cCCChHHH------------hhcEE------E----Ee-------------------cCCHHHHHHHHHHHHHH
Confidence 1110 01111111 11110 0 01 4444 47899999999
Q ss_pred ccC-CCEEEEeCcCcCCCHHHH--------HHHHHHHHHHcC--CCeEEEeccCch-------------HH-hhcCeEEE
Q 004826 630 LKA-PPILLCDEATSALDSTTE--------AEILNALKSLAN--NRTSIFIAHRLT-------------TA-MQCDEIIV 684 (728)
Q Consensus 630 l~~-p~ILILDEaTSaLD~~tE--------~~I~~~L~~l~~--~~TvIvIaHRLs-------------ti-~~aD~IiV 684 (728)
+++ |+++|+||||+.+|+..+ ..+.+.|+++.+ ++|+|+++|... .+ ..||.|++
T Consensus 102 ~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~ 181 (220)
T 2cvh_A 102 VDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILR 181 (220)
T ss_dssp CCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEE
T ss_pred hhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEE
Confidence 986 999999999999997543 345555666543 899999999865 33 45999999
Q ss_pred EeCC
Q 004826 685 LENG 688 (728)
Q Consensus 685 ld~G 688 (728)
|++.
T Consensus 182 l~~~ 185 (220)
T 2cvh_A 182 LDKL 185 (220)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9865
No 123
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.61 E-value=4.1e-17 Score=165.50 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=107.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHH-----HHH
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIF-----HNI 553 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIr-----eNI 553 (728)
..++|+.++|+||||||||||+++|+|+++| ..|+|.+++.+.+. ..++.++|++|++.+|...+. ||+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 5799999999999999999999999999986 78999999877653 246789999999988765332 333
Q ss_pred HcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCC
Q 004826 554 RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP 633 (728)
Q Consensus 554 ~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p 633 (728)
.+.. + +.|-.+++ ++.++..+
T Consensus 88 ~~~~-------------------------------------~-------------------~yg~~~~~---v~~~l~~G 108 (219)
T 1s96_A 88 EVFG-------------------------------------N-------------------YYGTSREA---IEQVLATG 108 (219)
T ss_dssp EETT-------------------------------------E-------------------EEEEEHHH---HHHHHTTT
T ss_pred HHHh-------------------------------------c-------------------cCCCCHHH---HHHHHhcC
Confidence 2210 0 11111222 45566778
Q ss_pred CEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeCCEEEEEcChHHHhhc
Q 004826 634 PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLENGKVIEQGSHDDLLTK 702 (728)
Q Consensus 634 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~G~Ive~Gth~eLl~~ 702 (728)
+++||| ||+++.+.+.+.+. +++|+++++|.++.++. |+ +++| .|+.+++.++
T Consensus 109 ~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 109 VDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp CEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred CeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 999999 99999999998875 58999999999998876 43 6777 6788888654
No 124
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=5.9e-17 Score=178.52 Aligned_cols=180 Identities=16% Similarity=0.178 Sum_probs=116.9
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcE--EEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcce
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSI 535 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~--vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~I 535 (728)
.+++++ +++|++ .+ |+++||++++|+. +|||||||||||||+++|+|+. ++|.++...++...++.+
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 456666 778854 45 9999999999999 9999999999999999999984 566666655555567789
Q ss_pred EEEcCCCCCC-cccHHHHHHcCCCCCCHHHHHHHHH---HhccHHHHHhC-------CCcccch----h---hccccccc
Q 004826 536 GVVPQDTVLF-NDTIFHNIRYGRLSATEEEVYDAAR---RAAIHDTIMNF-------PAKYSTV----V---GERGLKGR 597 (728)
Q Consensus 536 a~V~Qd~~LF-~gTIreNI~~g~~~~sdeei~~A~~---~a~l~~~I~~L-------P~G~dT~----v---gE~G~~~~ 597 (728)
+||+|++.++ .-|+.||+.||.. .+.+..|+... ...+.+++... +..-|+. | -+.|..
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~-- 161 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS-- 161 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC----
T ss_pred EEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--
Confidence 9999999887 5699999999964 44433222211 11222233221 2222332 1 122222
Q ss_pred hhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHH-Hc-CCCeEEEecc
Q 004826 598 SLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS-LA-NNRTSIFIAH 671 (728)
Q Consensus 598 ~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~-l~-~~~TvIvIaH 671 (728)
|+-.+ +.|+|+|-.+++|+++||+|..|.+..-..+.+.+++ +. .|.+++.|+.
T Consensus 162 -----------------l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 162 -----------------LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp ------------------CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred -----------------CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 66665 8999999999999999999999988777777777775 43 4678888875
No 125
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.59 E-value=1.1e-15 Score=160.29 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=100.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHH-HcCCCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI-RYGRLS 559 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI-~~g~~~ 559 (728)
.+++|+.++|+||+|||||||++.+++... .|.+. .|.+..+ +..+.|++.+... ..+.+++ .++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 378999999999999999999999998654 57663 3544321 3467888776543 3343443 2332 2
Q ss_pred CCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEe
Q 004826 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCD 639 (728)
Q Consensus 560 ~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILD 639 (728)
..+++..++++...+.+ ..+..-.. ||+||+|++ |+++++|+++|||
T Consensus 94 ~~~~~~~~~~~~l~l~~-----------~~~~~~~~-------------------ls~g~~~~i---~~l~~~~~livlD 140 (279)
T 1nlf_A 94 LSAEERQAVADGLLIQP-----------LIGSLPNI-------------------MAPEWFDGL---KRAAEGRRLMVLD 140 (279)
T ss_dssp SCHHHHHHHHHHEEECC-----------CTTSCCCT-------------------TSHHHHHHH---HHHHTTCSEEEEE
T ss_pred cChhhhhhccCceEEee-----------cCCCCccc-------------------CCHHHHHHH---HHhcCCCCEEEEC
Confidence 34444444444443322 11222222 999998865 7889999999999
Q ss_pred CcCc--CCCHHHH---HHHHHHHHHHc--CCCeEEEeccCchHH
Q 004826 640 EATS--ALDSTTE---AEILNALKSLA--NNRTSIFIAHRLTTA 676 (728)
Q Consensus 640 EaTS--aLD~~tE---~~I~~~L~~l~--~~~TvIvIaHRLsti 676 (728)
|||+ ++|..+. ..+.+.|+++. .++|+|+|+|.....
T Consensus 141 e~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 141 TLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp CGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred CHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 9999 9997544 67777787764 489999999987654
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.59 E-value=4.1e-16 Score=185.19 Aligned_cols=165 Identities=16% Similarity=0.135 Sum_probs=110.3
Q ss_pred ceEEEEEEEEEec------CCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEEEECCEeCCCCCHH
Q 004826 457 GSIQFDNVHFSYL------TERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 457 g~I~f~nVsF~Y~------~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I~idG~di~~i~~~ 529 (728)
+.|++++.. +| +++.+++|+||+ ++|+.++|+|||||||||++|+++|+.-+ ..|. .+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 357777643 33 245799999999 99999999999999999999999997422 2221 1111
Q ss_pred HHhcceEEEcCCCCCCcc-cHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhcc
Q 004826 530 SLRKSIGVVPQDTVLFND-TIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 530 ~lR~~Ia~V~Qd~~LF~g-TIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
-+..+++++| +|.. ++.||+..+ . ..
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~----------------------------~--------st------------- 669 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG----------------------------R--------ST------------- 669 (800)
T ss_dssp -SEEEECCCCE---EEEEEC------------------------------------------------------------
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh----------------------------h--------hh-------------
Confidence 1235666655 3432 344443211 0 12
Q ss_pred CCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHH-HHHHHHHc--CCCeEEEeccCchHHhhcCeEEEE
Q 004826 609 RPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEI-LNALKSLA--NNRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I-~~~L~~l~--~~~TvIvIaHRLsti~~aD~IiVl 685 (728)
+|+|+++ ++.+...+.+|+++||||||+++|+.....+ .+.++.+. .++|+|++||.......||++..+
T Consensus 670 ------f~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v 742 (800)
T 1wb9_A 670 ------FMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGV 742 (800)
T ss_dssp ------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTE
T ss_pred ------hhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhce
Confidence 7777765 4444456899999999999888888665554 44555543 389999999999988889988778
Q ss_pred eCCEEEEEc
Q 004826 686 ENGKVIEQG 694 (728)
Q Consensus 686 d~G~Ive~G 694 (728)
++|++....
T Consensus 743 ~n~~~~~~~ 751 (800)
T 1wb9_A 743 ANVHLDALE 751 (800)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 888775443
No 127
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.51 E-value=3.2e-17 Score=176.96 Aligned_cols=193 Identities=14% Similarity=0.117 Sum_probs=123.4
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHHHhcc
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LESLRKS 534 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~----~~~lR~~ 534 (728)
|+++|+++.|. ...+|+++||++++|++++|+|++|||||||++.|+|++.|++|+|.+.|.|+.... ....|..
T Consensus 30 ie~~~~~~~~~-~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAA-VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHH-HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccC-hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 44555666674 356899999999999999999999999999999999999999999999999885433 1345788
Q ss_pred eEEEcCCCCCCcc-------------cHHHHHHc---C-C-------CCC--CHHHHHHHHHHhccHHHHHhCCCcccch
Q 004826 535 IGVVPQDTVLFND-------------TIFHNIRY---G-R-------LSA--TEEEVYDAARRAAIHDTIMNFPAKYSTV 588 (728)
Q Consensus 535 Ia~V~Qd~~LF~g-------------TIreNI~~---g-~-------~~~--sdeei~~A~~~a~l~~~I~~LP~G~dT~ 588 (728)
+++|+|++.+|.. +++|.+.. + . +.. ++..+. +.+.+-=++..-..|.+..
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~---~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVA---DLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHH---TTSSEEEEEECSCC-----
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHH---hhCCEEEEEEcCCCcccHH
Confidence 9999999999852 23333310 1 0 011 222221 1111100011000010000
Q ss_pred -hhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhcc------CCCEEEEeCcCcCCCHHHHHHHHHHHHHHc
Q 004826 589 -VGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLK------APPILLCDEATSALDSTTEAEILNALKSLA 661 (728)
Q Consensus 589 -vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~------~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 661 (728)
+ ..+.......++-||++..+ ...+|+|++|+++.|++++. +|+++. |||+|.+.-..+.+.|.+..
T Consensus 186 ~i-~~~i~~~~~ivvlNK~Dl~~-~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 186 GI-KKGIFELADMIAVNKADDGD-GERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp -C-CTTHHHHCSEEEEECCSTTC-CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HH-HHHHhccccEEEEEchhccC-chhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0 00000011112224444211 12379999999999999998 688886 99999999999999887753
No 128
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.51 E-value=1.1e-14 Score=148.56 Aligned_cols=146 Identities=18% Similarity=0.265 Sum_probs=90.0
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhc--CCCC-----CCCEEEECCEeCCC-CCHHHHhcceEEEcCCCCCCcccHHHH
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFR--SFDT-----HSGSIRIDGQDICE-VTLESLRKSIGVVPQDTVLFNDTIFHN 552 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~g--ly~p-----~~G~I~idG~di~~-i~~~~lR~~Ia~V~Qd~~LF~gTIreN 552 (728)
-|++|+.++|+||+|||||||++.|++ ..+| ..|.+++++.+.-. -....+++.+++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5665 67889998865211 1123344455555543 3444
Q ss_pred HHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhc--
Q 004826 553 IRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFL-- 630 (728)
Q Consensus 553 I~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl-- 630 (728)
+.+..+ .+.++.. +.+.-+++++
T Consensus 93 ~~~~~~-~~~~~~~------------------------------------------------------~~~~~~~~~~~~ 117 (243)
T 1n0w_A 93 VAYARA-FNTDHQT------------------------------------------------------QLLYQASAMMVE 117 (243)
T ss_dssp EEEEEC-CSHHHHH------------------------------------------------------HHHHHHHHHHHH
T ss_pred eEEEec-CCHHHHH------------------------------------------------------HHHHHHHHHHhc
Confidence 433322 1222221 1122222333
Q ss_pred cCCCEEEEeCcCcCCCHH-------HHH-----HHHHHHHHHc--CCCeEEEeccCchHHh-------------------
Q 004826 631 KAPPILLCDEATSALDST-------TEA-----EILNALKSLA--NNRTSIFIAHRLTTAM------------------- 677 (728)
Q Consensus 631 ~~p~ILILDEaTSaLD~~-------tE~-----~I~~~L~~l~--~~~TvIvIaHRLsti~------------------- 677 (728)
.+|+++|+||+|+.+|++ +++ .+...|.++. .++|+|+++|-.....
T Consensus 118 ~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~ 197 (243)
T 1n0w_A 118 SRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 197 (243)
T ss_dssp SCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------C
T ss_pred CCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhh
Confidence 479999999999999986 433 3344454433 3899999999654432
Q ss_pred -hcCeEEEEeCC
Q 004826 678 -QCDEIIVLENG 688 (728)
Q Consensus 678 -~aD~IiVld~G 688 (728)
.||.|++|++|
T Consensus 198 ~~~d~vi~l~~~ 209 (243)
T 1n0w_A 198 HASTTRLYLRKG 209 (243)
T ss_dssp CTTCEEEEEEEC
T ss_pred hcCcEEEEEEEc
Confidence 58999999876
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.47 E-value=2.2e-14 Score=160.11 Aligned_cols=154 Identities=20% Similarity=0.281 Sum_probs=105.3
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC----HHH--HhcceEEEcCCCCCC-ccc
Q 004826 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT----LES--LRKSIGVVPQDTVLF-NDT 548 (728)
Q Consensus 476 ~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~----~~~--lR~~Ia~V~Qd~~LF-~gT 548 (728)
+++||++++|++++|||+||||||||++.|+|++.|++|+|.++|.|+.... +.. .|+.|+||+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5789999999999999999999999999999999999999999988875431 122 477899999998765 569
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhc-cccccchhHHHhhhhccCCCCCCCChhHHHHHHHHH
Q 004826 549 IFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGE-RGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALAR 627 (728)
Q Consensus 549 IreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE-~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIAR 627 (728)
+++||.++.. .|+|..+=+ -|..+.... +-.--+|++.++|
T Consensus 364 V~e~l~~a~~------------------------~~~DvVLIDTaGrl~~~~~--------------lm~EL~kiv~iar 405 (503)
T 2yhs_A 364 IFDAIQAAKA------------------------RNIDVLIADTAGRLQNKSH--------------LMEELKKIVRVMK 405 (503)
T ss_dssp HHHHHHHHHH------------------------TTCSEEEECCCCSCCCHHH--------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------------------------cCCCEEEEeCCCccchhhh--------------HHHHHHHHHHHHH
Confidence 9999987631 112211111 121100000 2222358999999
Q ss_pred HhccC-CC-EEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEecc
Q 004826 628 AFLKA-PP-ILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671 (728)
Q Consensus 628 ALl~~-p~-ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH 671 (728)
++..+ |. +|+..+||++.|.... .+.+.+ ..+.|.|++||
T Consensus 406 ~l~~~~P~evLLvLDattGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 406 KLDVEAPHEVMLTIDASTGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp TTCTTCSSEEEEEEEGGGTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred HhccCCCCeeEEEecCcccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 88654 53 4545558888665533 222322 24789999999
No 130
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.46 E-value=2.8e-16 Score=178.19 Aligned_cols=173 Identities=14% Similarity=0.177 Sum_probs=122.6
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc--ccHH
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN--DTIF 550 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~--gTIr 550 (728)
++++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.++. +++++++.|+.. .. .|++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 57889999999999999999999999999999999999999999999865222221 457888888776 33 3788
Q ss_pred HHHHcC---CC------CCCHHHHHHHHHHhc-------------cHHHHHh---CCCcccchhhc-------cccccch
Q 004826 551 HNIRYG---RL------SATEEEVYDAARRAA-------------IHDTIMN---FPAKYSTVVGE-------RGLKGRS 598 (728)
Q Consensus 551 eNI~~g---~~------~~sdeei~~A~~~a~-------------l~~~I~~---LP~G~dT~vgE-------~G~~~~~ 598 (728)
+++... +| +..++|...+++.+. +.+.+.. .|.|....+.+ ....
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~--- 400 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMW--- 400 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEE---
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEE---
Confidence 887543 33 466666766666653 1222322 23333332221 1112
Q ss_pred hHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEE--eccCchH
Q 004826 599 LLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLAN-NRTSIF--IAHRLTT 675 (728)
Q Consensus 599 ~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIv--IaHRLst 675 (728)
+|||||||.++|. + | |++||+++.+.+.+.|.++.+ ++|+++ +||.++.
T Consensus 401 ----------------~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e 452 (511)
T 2oap_1 401 ----------------VRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK 452 (511)
T ss_dssp ----------------ESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH
T ss_pred ----------------EeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH
Confidence 7999999988752 1 7 999999887777766665543 688875 8999998
Q ss_pred Hhh-cC
Q 004826 676 AMQ-CD 680 (728)
Q Consensus 676 i~~-aD 680 (728)
+.. |+
T Consensus 453 i~~~~g 458 (511)
T 2oap_1 453 MADFLG 458 (511)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 754 54
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.46 E-value=8.4e-17 Score=158.61 Aligned_cols=170 Identities=18% Similarity=0.085 Sum_probs=108.9
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCC-cccHHHHHHcCCCCCCHH
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSATEE 563 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF-~gTIreNI~~g~~~~sde 563 (728)
|+.++|+|||||||||+++.|++ |.+|.+.+||.++.+. ..+++++|+...+ ..|+++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 68999999999999999999997 7789999998655332 2457788766433 44777776532
Q ss_pred HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCC--ChhHHHHHHHHH------HhccCCCE
Q 004826 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSL--SGGEKQRVALAR------AFLKAPPI 635 (728)
Q Consensus 564 ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~L--SGGQrQRIaIAR------ALl~~p~I 635 (728)
..... ..+. +.| +|...+.... .... .+ |+|++|++.++. +++++|+.
T Consensus 66 -~~~~~-~~~~-~~i------ld~~~~~~~~-----~~~~----------~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~ 121 (189)
T 2bdt_A 66 -TVNFL-LAQN-DVV------LDYIAFPDEA-----EALA----------QTVQAKVDDVEIRFIILWTNREELLRRDAL 121 (189)
T ss_dssp -HHHHH-HTTC-EEE------EESCCCHHHH-----HHHH----------HHHHHHCSSEEEEEEEEECCHHHHHHHTTT
T ss_pred -HHHHH-hcCC-cEE------EeeccCHHHH-----HHHH----------HHHHhcccCCCeEEEEEeCCHHHHHHHHHh
Confidence 00111 0110 011 1111111000 0000 15 899999988888 89999998
Q ss_pred EEEeCcCcCCCHHHHHHHHHHHHHHcC-CCeEEEeccC-chHHhh-cCeEEEEeCCEEEEEcChHHHh
Q 004826 636 LLCDEATSALDSTTEAEILNALKSLAN-NRTSIFIAHR-LTTAMQ-CDEIIVLENGKVIEQGSHDDLL 700 (728)
Q Consensus 636 LILDEaTSaLD~~tE~~I~~~L~~l~~-~~TvIvIaHR-Lsti~~-aD~IiVld~G~Ive~Gth~eLl 700 (728)
..+|+ .+|++..+. .+.++.+.. +.|+|..+|. +++++. ||+|+ ++|+++..|+.+-|-
T Consensus 122 r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 122 RKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp SCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred ccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 88884 789887777 777776643 5788889999 888765 99998 999999999987663
No 132
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.45 E-value=3e-16 Score=150.92 Aligned_cols=88 Identities=15% Similarity=0.186 Sum_probs=73.1
Q ss_pred EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCC
Q 004826 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd 541 (728)
+|++++|. ++.+++++||+|++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+. ...+ .+|+|+
T Consensus 11 ~~~~~~~g-~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~ 83 (158)
T 1htw_A 11 EFSMLRFG-KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYH 83 (158)
T ss_dssp HHHHHHHH-HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEE
T ss_pred HHHHHHHH-HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccceec
Confidence 34566664 357899999999999999999999999999999999999 9999999999887531 1112 279999
Q ss_pred CCCCcccHHHHHH-cC
Q 004826 542 TVLFNDTIFHNIR-YG 556 (728)
Q Consensus 542 ~~LF~gTIreNI~-~g 556 (728)
+.+|.-|+.||+. +|
T Consensus 84 ~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 84 FDLYRLADPEELEFMG 99 (158)
T ss_dssp EECTTCSCTTHHHHST
T ss_pred cccccCCcHHHHHHcC
Confidence 9999889999995 45
No 133
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.45 E-value=2.8e-14 Score=153.12 Aligned_cols=166 Identities=17% Similarity=0.161 Sum_probs=109.6
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH----HHhcc--eEEEcCCCCCCc-ccHHHHH
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE----SLRKS--IGVVPQDTVLFN-DTIFHNI 553 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~----~lR~~--Ia~V~Qd~~LF~-gTIreNI 553 (728)
..++|+.++|||||||||||+++.|+|++.|++|+|.++|.|+...... .++++ +.+++|+..++. .|++|||
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999877643 34444 559999988875 5899999
Q ss_pred HcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCC
Q 004826 554 RYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAP 633 (728)
Q Consensus 554 ~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p 633 (728)
.++.. .+. +.+. .|| -|..+.. ..=-++.-.|+|++..++
T Consensus 205 ~~~~~-------------~~~-d~vl-----iDt----aG~~~~~-----------------~~l~~eL~~i~ral~~de 244 (328)
T 3e70_C 205 QHAKA-------------RGI-DVVL-----IDT----AGRSETN-----------------RNLMDEMKKIARVTKPNL 244 (328)
T ss_dssp HHHHH-------------HTC-SEEE-----EEE----CCSCCTT-----------------TCHHHHHHHHHHHHCCSE
T ss_pred HHHHh-------------ccc-hhhH-----Hhh----ccchhHH-----------------HHHHHHHHHHHHHhcCCC
Confidence 76420 000 1100 222 2221000 011123345999999999
Q ss_pred CEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchH---------H-hhcCeEEEEeCCEEE
Q 004826 634 PILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTT---------A-MQCDEIIVLENGKVI 691 (728)
Q Consensus 634 ~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLst---------i-~~aD~IiVld~G~Iv 691 (728)
++++||.+|. .|..... +.+.+ ..+.|.|++||--.+ + ...-.|..+..|+-+
T Consensus 245 ~llvLDa~t~-~~~~~~~---~~~~~-~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 245 VIFVGDALAG-NAIVEQA---RQFNE-AVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp EEEEEEGGGT-THHHHHH---HHHHH-HSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred CEEEEecHHH-HHHHHHH---HHHHH-hcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 9999996655 3333221 22222 247899999994322 1 123467778877754
No 134
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.44 E-value=2.1e-13 Score=149.09 Aligned_cols=73 Identities=29% Similarity=0.393 Sum_probs=67.6
Q ss_pred CCChhHHHHH------HHHHHhccC-CCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEe
Q 004826 614 SLSGGEKQRV------ALARAFLKA-PPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 614 ~LSGGQrQRI------aIARALl~~-p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld 686 (728)
.|||||+||+ ++|||+..+ |++|||||||++||+++...+.+.|.++.+++|+|+|||+......||++++|+
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 3999999987 678999999 999999999999999999999999998766789999999998777899999997
No 135
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.44 E-value=3.2e-16 Score=173.39 Aligned_cols=129 Identities=17% Similarity=0.134 Sum_probs=90.0
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC----CCHHHHhcceEEEc---------
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE----VTLESLRKSIGVVP--------- 539 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~----i~~~~lR~~Ia~V~--------- 539 (728)
++|+++ + .++|+.++|+|||||||||++++|+|+++|++|+|.++|.++.. ++...+++.+++++
T Consensus 157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGG
T ss_pred HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhc
Confidence 356666 4 38999999999999999999999999999999999999988742 11223455566654
Q ss_pred CCCCCC--c-----ccHHHHHHcCCC--------CC-CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHh
Q 004826 540 QDTVLF--N-----DTIFHNIRYGRL--------SA-TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQ 603 (728)
Q Consensus 540 Qd~~LF--~-----gTIreNI~~g~~--------~~-sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~ 603 (728)
|+|.++ . .|+++|+.++.. .. +..+..+.+...++.++. ....
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~-------- 293 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSS-------- 293 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHH--------
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHH--------
Confidence 888753 2 378888865321 11 112333344444433221 1223
Q ss_pred hhhccCCCCCCCChhHHHHHHHHHHhccCCCEEE
Q 004826 604 KKLERRPLFVSLSGGEKQRVALARAFLKAPPILL 637 (728)
Q Consensus 604 ~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILI 637 (728)
|||||+|| |||||..+|++..
T Consensus 294 -----------LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 294 -----------LLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp -----------EEEEEEEE--EEEEECTTTCEEE
T ss_pred -----------HHHHHHHH--hhhhhcCCCCccC
Confidence 99999999 9999999999876
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.43 E-value=6.6e-14 Score=151.22 Aligned_cols=138 Identities=16% Similarity=0.206 Sum_probs=81.4
Q ss_pred cEEEEECCCCccHHHHHHHHhc-CCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCC-cccHHHHHHcCCCCCCHH
Q 004826 486 KSVAIVGTSGSGKSTILRLLFR-SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSATEE 563 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~g-ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF-~gTIreNI~~g~~~~sde 563 (728)
..+.|+||+|+||||+++.|++ ++.|+.|.|.++|.+...... -+..+++++|++++. +.+- .+. ...+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~ 107 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRI 107 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchH
Confidence 3499999999999999999999 899999999999988765433 377899999998753 2110 111 1122
Q ss_pred HHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcCc
Q 004826 564 EVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEATS 643 (728)
Q Consensus 564 ei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaTS 643 (728)
.+.+.++.+. ... +++..+ . ||| +..+|+++|||||++
T Consensus 108 ~~~~~i~~~~-----~~~--~~~~~~-----~-------------------ls~-----------l~~~~~vlilDE~~~ 145 (354)
T 1sxj_E 108 VIQELLKEVA-----QME--QVDFQD-----S-------------------KDG-----------LAHRYKCVIINEANS 145 (354)
T ss_dssp HHHHHHHHHT-----TTT--C-----------------------------------------------CCEEEEEECTTS
T ss_pred HHHHHHHHHH-----Hhc--cccccc-----c-------------------ccc-----------cCCCCeEEEEeCccc
Confidence 3333333221 111 111111 3 787 778999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEeccCchH
Q 004826 644 ALDSTTEAEILNALKSLANNRTSIFIAHRLTT 675 (728)
Q Consensus 644 aLD~~tE~~I~~~L~~l~~~~TvIvIaHRLst 675 (728)
||+++...+.+.+++..+++++|++||+++.
T Consensus 146 -L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 146 -LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp -SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred -cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 9999999999999987788999999999764
No 137
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.39 E-value=1.3e-13 Score=148.88 Aligned_cols=123 Identities=14% Similarity=0.090 Sum_probs=79.8
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC-CCCCEEEEC-CEeCCCCCHHHHhcceEEEcCCCCCCcc-cH
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-THSGSIRID-GQDICEVTLESLRKSIGVVPQDTVLFND-TI 549 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-p~~G~I~id-G~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TI 549 (728)
.-++++++. .+|++++|+|+||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++|+|++.+++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 346777764 5899999999999999999999999999 999999997 76643 2456789999999998865 89
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh
Q 004826 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF 629 (728)
Q Consensus 550 reNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL 629 (728)
+|+- ....+.+++.+ .+.++++.+ |+.-. +.|...+|| ||+||++||+++
T Consensus 279 ~e~~---l~~l~~~e~~~-----~~~e~l~~~--gl~~f-------------------~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 279 REFG---LWHLEPEQITQ-----GFVEFHDYL--GHCKY-------------------RDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp HTCC---CCCCCHHHHHH-----TSGGGGGGT--TCSSS-------------------TTCCSSSCT-TCHHHHHHHHTS
T ss_pred HHhh---hcCCCHHHHHH-----HHHHHHHHc--CCchh-------------------cCCCcccCC-HHHHHHHHHhcC
Confidence 9863 22355555432 233333332 11111 122223499 999999999986
Q ss_pred c
Q 004826 630 L 630 (728)
Q Consensus 630 l 630 (728)
+
T Consensus 329 i 329 (358)
T 2rcn_A 329 I 329 (358)
T ss_dssp S
T ss_pred C
Confidence 3
No 138
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.39 E-value=1.4e-13 Score=151.48 Aligned_cols=147 Identities=18% Similarity=0.278 Sum_probs=95.4
Q ss_pred EEeCCcEEEEECCCCccHHHHHHH--HhcCCCCCCC-----EEEECCEeC-CCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRL--LFRSFDTHSG-----SIRIDGQDI-CEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~L--L~gly~p~~G-----~I~idG~di-~~i~~~~lR~~Ia~V~Qd~~LF~gTIreN 552 (728)
-|++|+.++|+||||||||||++. +.+..+|+.| .|++|+.+. +......+++.+++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 589999999999999999999994 4577766544 889988652 12223334455665544 56666
Q ss_pred HHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhc--
Q 004826 553 IRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFL-- 630 (728)
Q Consensus 553 I~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl-- 630 (728)
+.+..+ .+.++ |.+.+.-+++++
T Consensus 247 i~~~~~-~~~~~------------------------------------------------------~~~~l~~~~~~l~~ 271 (400)
T 3lda_A 247 VAYARA-YNADH------------------------------------------------------QLRLLDAAAQMMSE 271 (400)
T ss_dssp EEEEEC-CSHHH------------------------------------------------------HHHHHHHHHHHHHH
T ss_pred EEEecc-CChHH------------------------------------------------------HHHHHHHHHHHHHh
Confidence 665543 12221 222233233322
Q ss_pred cCCCEEEEeCcCcCCCHHHH------------HHHHHHHHHHc--CCCeEEEeccCch-------------------HHh
Q 004826 631 KAPPILLCDEATSALDSTTE------------AEILNALKSLA--NNRTSIFIAHRLT-------------------TAM 677 (728)
Q Consensus 631 ~~p~ILILDEaTSaLD~~tE------------~~I~~~L~~l~--~~~TvIvIaHRLs-------------------ti~ 677 (728)
.+|+++|+||+|+.+|++.. ..+.+.|+++. .++|+|+|+|-.+ .+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 36999999999999997654 45666676654 3799999999832 223
Q ss_pred h-cCeEEEEeCCE
Q 004826 678 Q-CDEIIVLENGK 689 (728)
Q Consensus 678 ~-aD~IiVld~G~ 689 (728)
+ ||.+++|++|+
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 3 79999998764
No 139
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.39 E-value=9.7e-15 Score=150.25 Aligned_cols=170 Identities=14% Similarity=0.122 Sum_probs=105.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHh---cCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc-ccHHHHHHcC---
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN-DTIFHNIRYG--- 556 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~---gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~-gTIreNI~~g--- 556 (728)
++++++|+|++||||||++++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999886542 234556677778776554 5889998541
Q ss_pred ----------CCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh-ccCCCCCCCChhHHHHHHH
Q 004826 557 ----------RLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL-ERRPLFVSLSGGEKQRVAL 625 (728)
Q Consensus 557 ----------~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~-~~~~~~~~LSGGQrQRIaI 625 (728)
.+ .+.++.... ..+ .+.+..+-= ..+......++ .+.+. .||| |+
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l----------~~~-~~~~~vi~L----~~~~~~~l~r~~~r~~~--~lSg----rv-- 157 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEAL----------DKI-CEVDLVISL----NIPFETLKDRLSRRWIH--PPSG----RV-- 157 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHH----------HTT-CCCCEEEEE----ECCHHHHHHHHHTEEEE--TTTT----EE--
T ss_pred cCCCeEEEECCC-CCHHHHHHH----------Hhh-cCCCEEEEE----ECCHHHHHHHHHcCCCc--CCCC----Cc--
Confidence 11 122211111 111 011100000 00000000111 11111 2899 66
Q ss_pred HHHh-ccCCCEEEEe----CcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEeC
Q 004826 626 ARAF-LKAPPILLCD----EATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLEN 687 (728)
Q Consensus 626 ARAL-l~~p~ILILD----EaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld~ 687 (728)
||+ +.+|++++|| |||++||..+++.+.+.++.+.+....+ +....+.++++++|.
T Consensus 158 -~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v-----~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 158 -YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPV-----IELYKSRGVLHQFSG 218 (246)
T ss_dssp -EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHH-----HHHHHHTTCEEEEEC
T ss_pred -cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHH-----HHHHhhcCcEEEECC
Confidence 889 9999999999 9999999999999999887754321100 112234567777764
No 140
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.33 E-value=1.2e-15 Score=155.48 Aligned_cols=148 Identities=17% Similarity=0.230 Sum_probs=69.3
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh-cCC------------CCCCCEEEECCEeCCCCCHHHHhcceEEEc
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF-RSF------------DTHSGSIRIDGQDICEVTLESLRKSIGVVP 539 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~-gly------------~p~~G~I~idG~di~~i~~~~lR~~Ia~V~ 539 (728)
...+++||++++|+.++|+||||||||||+++|+ |++ +|..|++ +|+++...+...+... ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4678999999999999999999999999999999 999 7777765 6655554555554432 23
Q ss_pred CCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhH
Q 004826 540 QDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGE 619 (728)
Q Consensus 540 Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQ 619 (728)
++.+++..++.+|+ ||.+.. ++.++++... ..|..++ -.|. ..-
T Consensus 90 ~~~~~~~~~~~~~~-~~~~~~---~i~~~~~~~~--~vild~~--------~~g~----------------------~~~ 133 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVPRK---NLEDNVDKGV--STLLVID--------WQGA----------------------FKF 133 (231)
T ss_dssp TTCEEEEEEETTEE-EEEECT---THHHHHHHTC--EEEEECC--------HHHH----------------------HHH
T ss_pred cCceehhhhhcccc-CCCCHH---HHHHHHHcCC--eEEEEcC--------HHHH----------------------HHH
Confidence 55555555565554 554332 2333333321 0111110 0111 111
Q ss_pred HHHH-HHHH-HhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc
Q 004826 620 KQRV-ALAR-AFLKAPPILLCDEATSALDSTTEAEILNALKSLA 661 (728)
Q Consensus 620 rQRI-aIAR-ALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~ 661 (728)
++++ .-++ .++..|+..+|||.+++.|..+++.+.+.|++..
T Consensus 134 ~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~ 177 (231)
T 3lnc_A 134 MEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAA 177 (231)
T ss_dssp HHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHH
T ss_pred HHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3444 2222 4567888999999999999999999887776543
No 141
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.31 E-value=2.2e-14 Score=145.08 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=108.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC---CCCCCEEEE--------CCEeCCC-CCHHHHhcceEEEcCCC------CCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF---DTHSGSIRI--------DGQDICE-VTLESLRKSIGVVPQDT------VLF 545 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly---~p~~G~I~i--------dG~di~~-i~~~~lR~~Ia~V~Qd~------~LF 545 (728)
.+.+++|+|+|||||||++++|.+.| .++.|.|.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999988 7888763 56778999999999986 667
Q ss_pred cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhh-ccccccchhHHHhhhhccCCCCCCCChhHHHHHH
Q 004826 546 NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVG-ERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVA 624 (728)
Q Consensus 546 ~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vg-E~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIa 624 (728)
..++.+++. ++++.+++..+..|++|...+.+.++.+. ++|.- ++|+ .
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~v-------------------ldg~-----~ 132 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLI-------------------ADGR-----D 132 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEE-------------------EEES-----S
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEE-------------------EECC-----C
Confidence 778888863 57899999999999999998888877764 45655 8887 5
Q ss_pred HHHHhccCCCEEEEeCcCc
Q 004826 625 LARAFLKAPPILLCDEATS 643 (728)
Q Consensus 625 IARALl~~p~ILILDEaTS 643 (728)
++++++++++++|+.+++.
T Consensus 133 ~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 133 MGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp CCCCCCTTCSEEEEEECCH
T ss_pred ccceEecCCCEEEEEeCCH
Confidence 7778899999999988864
No 142
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.28 E-value=1e-12 Score=128.21 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=38.7
Q ss_pred ccCCCEEEEeCcCc-CCCHHHHHHHHHHHHHHc-CCCeEEEeccCch
Q 004826 630 LKAPPILLCDEATS-ALDSTTEAEILNALKSLA-NNRTSIFIAHRLT 674 (728)
Q Consensus 630 l~~p~ILILDEaTS-aLD~~tE~~I~~~L~~l~-~~~TvIvIaHRLs 674 (728)
+.+|++||||||++ ++|+.....+.+.++... +++|+|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45899999999996 899999988888887665 6899999999874
No 143
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.27 E-value=3.3e-13 Score=143.38 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=77.7
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEE---CCEeCCCCCHHHHh-cceEEEcCCCCCC------cccH
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLR-KSIGVVPQDTVLF------NDTI 549 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~i---dG~di~~i~~~~lR-~~Ia~V~Qd~~LF------~gTI 549 (728)
+++.+|++++|+|+||||||||+|.|+ +.+|++|+|.+ +|.++..... ..+ +.+++|+|+|-+. .-|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 345679999999999999999999999 99999999999 9988876542 223 3799999999553 4578
Q ss_pred HHHH--HcCC------------C-CCCHHHHHHHHHHhccHH-HHHhCCCcccchhhccccccchhHHHhhhhccCCCCC
Q 004826 550 FHNI--RYGR------------L-SATEEEVYDAARRAAIHD-TIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFV 613 (728)
Q Consensus 550 reNI--~~g~------------~-~~sdeei~~A~~~a~l~~-~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~ 613 (728)
||+ .|+. + .-..+.+.++++..++.+ ...+. ..
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~--------------------~~---------- 286 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSY--------------------LK---------- 286 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHH--------------------HH----------
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHH--------------------HH----------
Confidence 898 4430 1 112345666766666643 22221 11
Q ss_pred CCChhHHHHHHHHH
Q 004826 614 SLSGGEKQRVALAR 627 (728)
Q Consensus 614 ~LSGGQrQRIaIAR 627 (728)
.|||.++++++|||
T Consensus 287 ~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 287 IIKVYLEEIKELCR 300 (302)
T ss_dssp HTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHhc
Confidence 19998899999998
No 144
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.26 E-value=9.5e-15 Score=153.14 Aligned_cols=145 Identities=17% Similarity=0.263 Sum_probs=105.2
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCC-CCCc-ccH
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-VLFN-DTI 549 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~-~LF~-gTI 549 (728)
+.+++++++++++| ++|+||+|||||||++.|++.+.+ |.|.++|.++.+......++.+++++|++ ..+. -++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 35789999999999 999999999999999999999877 79999999987766677788899999986 3333 367
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh
Q 004826 550 FHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF 629 (728)
Q Consensus 550 reNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL 629 (728)
.|||....+...+++. ....+.. +..+ .. |||||+||..|++|+
T Consensus 109 ~Deid~~~~~r~~~~~------~~~~~~~-------~~~l----~~-------------------Lsgg~~~~~~i~ia~ 152 (274)
T 2x8a_A 109 FDEVDALCPRRSDRET------GASVRVV-------NQLL----TE-------------------MDGLEARQQVFIMAA 152 (274)
T ss_dssp EETCTTTCC---------------CTTHH-------HHHH----HH-------------------HHTCCSTTCEEEEEE
T ss_pred eehhhhhhcccCCCcc------hHHHHHH-------HHHH----Hh-------------------hhcccccCCEEEEee
Confidence 7888654332111110 0011111 1111 11 999999999999999
Q ss_pred ccCCCEEEEeCcCc------------CCCHHHHHHHHHHHH
Q 004826 630 LKAPPILLCDEATS------------ALDSTTEAEILNALK 658 (728)
Q Consensus 630 l~~p~ILILDEaTS------------aLD~~tE~~I~~~L~ 658 (728)
..+|++| |||+. --|.+....|++.+.
T Consensus 153 tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 153 TNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp ESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 9999975 99975 237777777776653
No 145
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.26 E-value=2.7e-12 Score=122.02 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=37.0
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC--EEEECCEe
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQD 522 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~d 522 (728)
.+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+.+++.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~ 74 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAAS 74 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHH
Confidence 356666 8999999999999999999999999987 57 66666644
No 146
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.21 E-value=2e-12 Score=142.77 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=93.0
Q ss_pred eeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHH
Q 004826 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 475 L~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 554 (728)
-++++|++++|+.|+|||++|||||||++.|++..+ .+.+.+... +...+++|+|+.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999843 344444433 3446788877651 1123333322
Q ss_pred cCC-----CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHh
Q 004826 555 YGR-----LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAF 629 (728)
Q Consensus 555 ~g~-----~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARAL 629 (728)
+.. ...... ..+..+.+ +..+.-+.-. +.++. +||+||+||.++||+|
T Consensus 215 li~~a~~~~~L~~~-fl~~~era--~~lL~vvDls-~~~~~-----------------------~ls~g~~el~~la~aL 267 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIART--RVLLYVLDAA-DEPLK-----------------------TLETLRKEVGAYDPAL 267 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSS--SEEEEEEETT-SCHHH-----------------------HHHHHHHHHHHHCHHH
T ss_pred cccchhhhhhhhHH-HHHHHHHH--HhhhEEeCCc-cCCHH-----------------------HHHHHHHHHHHHhHHh
Confidence 211 001111 11111111 1111111000 11111 2999999999999999
Q ss_pred ccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc--CCCeEEEecc
Q 004826 630 LKAPPILLCDEATSALDSTTEAEILNALKSLA--NNRTSIFIAH 671 (728)
Q Consensus 630 l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~--~~~TvIvIaH 671 (728)
..+|.||+| +.+|..+. ...+.+.+.. .+.+++.||.
T Consensus 268 ~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 268 LRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 999999999 88998765 3334443322 3568887763
No 147
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.19 E-value=6.6e-13 Score=137.32 Aligned_cols=110 Identities=23% Similarity=0.221 Sum_probs=90.3
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHh---cCCCCCCCEEE--------ECCEeC-CCCCHHHHhcceEEEcC-
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSIR--------IDGQDI-CEVTLESLRKSIGVVPQ- 540 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~---gly~p~~G~I~--------idG~di-~~i~~~~lR~~Ia~V~Q- 540 (728)
++++.+ ++|++|+|+|||||||||++++|+ |++.|++|.|. .+|.++ .+.....+++.+++++|
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 899999999999999999999999 99999999999 999998 45678899999999995
Q ss_pred -----CCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccc
Q 004826 541 -----DTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERG 593 (728)
Q Consensus 541 -----d~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G 593 (728)
..++++.++.+||. .+++.+++..+..++.|.+....+...++++|
T Consensus 96 ~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~ 146 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREALLRRQRAFREAP 146 (252)
T ss_dssp ETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSS
T ss_pred CCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhCC
Confidence 45688889988875 35687888888888888887777777776655
No 148
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.18 E-value=9e-12 Score=123.60 Aligned_cols=178 Identities=17% Similarity=0.205 Sum_probs=103.0
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcc-cHHHHHHcCC
Q 004826 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHNIRYGR 557 (728)
Q Consensus 479 sl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIreNI~~g~ 557 (728)
|+++++|+.++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++.+|.. +..+|+....
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 57889999999999999999999999999973 688999888777666668899999999988765 4444443211
Q ss_pred C------CCCHHHHHHHHHHh----------ccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHH
Q 004826 558 L------SATEEEVYDAARRA----------AIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQ 621 (728)
Q Consensus 558 ~------~~sdeei~~A~~~a----------~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQ 621 (728)
. ..+.+++.++++.. ++.......|+.+-..+- ..+.+..-.|+..+... -....++
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~-----~~~~e~l~~Rl~~R~~~--~~~~i~~ 149 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFIL-----PPSIEALRERLIKRRQD--DTAIIEQ 149 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEE-----CSCHHHHHHHHHTCTTS--CSSTHHH
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEE-----CcCHHHHHHHHHHhCCC--CHHHHHH
Confidence 0 12234555555442 112222333332111110 00122333334433321 3456788
Q ss_pred HHHHHHHhc---cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeE
Q 004826 622 RVALARAFL---KAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 622 RIaIARALl---~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~I 682 (728)
|++-++... +.++.+|.++ .+|. +.++|.+.|+. ||+.+-+.+|+|
T Consensus 150 rl~~~~~~~~~~~~~d~vi~n~---~~~~-~~~~l~~~i~~-----------~~~~~~~~~~~~ 198 (205)
T 3tr0_A 150 RLALAREEMAHYKEFDYLVVND---NFDQ-AVQNLIHIISA-----------ERLQRDVQEKKL 198 (205)
T ss_dssp HHHHHHHHHTTGGGCSEEEECS---SHHH-HHHHHHHHHHH-----------HTTSHHHHHHHT
T ss_pred HHHHHHHHHhcccCCCEEEECC---CHHH-HHHHHHHHHHH-----------HHhhhhhhhhHH
Confidence 998888765 3467777654 2222 33444444433 566665555543
No 149
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.17 E-value=4.2e-13 Score=142.93 Aligned_cols=91 Identities=18% Similarity=0.261 Sum_probs=76.5
Q ss_pred ceEEEEEEEEEecCCceeeeeeeEEE-------------------eCCcEEEEECCCCccHHHHHHHHhcCCC--CCCCE
Q 004826 457 GSIQFDNVHFSYLTERKILDGVSFVV-------------------PAGKSVAIVGTSGSGKSTILRLLFRSFD--THSGS 515 (728)
Q Consensus 457 g~I~f~nVsF~Y~~~~~vL~~isl~I-------------------~~Ge~vAIVG~SGSGKSTL~~LL~gly~--p~~G~ 515 (728)
+.|+++||++.|. ++++++||++ ++|+++||+|+||||||||+++|+|++. |++|+
T Consensus 36 ~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred cccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 4699999999994 6899999988 9999999999999999999999999998 99999
Q ss_pred EEE---CCEeCCCCCHHHHhcceEEEcCCCCCC-cccHHHHHHc
Q 004826 516 IRI---DGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRY 555 (728)
Q Consensus 516 I~i---dG~di~~i~~~~lR~~Ia~V~Qd~~LF-~gTIreNI~~ 555 (728)
|.+ ||.+.. . ..++.+++| |+..++ .-|+.+|+.+
T Consensus 113 i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 113 VELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp EEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred EEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 999 998742 2 456778999 766553 3477777654
No 150
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.16 E-value=3.9e-12 Score=134.99 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=70.3
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEE---CCEeCCCCCHHHHhcceEEEcCCCC-------------
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRKSIGVVPQDTV------------- 543 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~i---dG~di~~i~~~~lR~~Ia~V~Qd~~------------- 543 (728)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 567789999999999999999999999999999999999 9998876552221246999999985
Q ss_pred ---CCc-ccHHHHHHcCCC---CCCHHHHHHHHHHhccH-HHHHhCCC
Q 004826 544 ---LFN-DTIFHNIRYGRL---SATEEEVYDAARRAAIH-DTIMNFPA 583 (728)
Q Consensus 544 ---LF~-gTIreNI~~g~~---~~sdeei~~A~~~a~l~-~~I~~LP~ 583 (728)
+|. -|+ ||+.|+.- ...++.+.++++..++. +...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 343 377 99988531 12345688999999994 65555543
No 151
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.14 E-value=2.3e-11 Score=128.67 Aligned_cols=141 Identities=15% Similarity=0.098 Sum_probs=97.8
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
+.++++++.|++. + ++++|+ +|+.++++|++|+||||++..|++++.+..|+|.+.+.|++.-...+
T Consensus 77 ~~~~~l~~~~~~~-~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~-------- 143 (295)
T 1ls1_A 77 TVYEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE-------- 143 (295)
T ss_dssp HHHHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH--------
T ss_pred HHHHHHHHHHCCC-C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH--------
Confidence 4555666666432 1 678888 99999999999999999999999999999999999987765321110
Q ss_pred cCCCCCCcccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 539 PQDTVLFNDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 539 ~Qd~~LF~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
++...++..+ ++-.. .|.. -.-.
T Consensus 144 -------------------------ql~~~~~~~~-----------l~~~~--~~~~-------------------~~p~ 166 (295)
T 1ls1_A 144 -------------------------QLRLLGEKVG-----------VPVLE--VMDG-------------------ESPE 166 (295)
T ss_dssp -------------------------HHHHHHHHHT-----------CCEEE--CCTT-------------------CCHH
T ss_pred -------------------------HHHHhcccCC-----------eEEEE--cCCC-------------------CCHH
Confidence 0001111111 11110 0111 2334
Q ss_pred HHHHHHHHHHhccCCCEEEEeCc-CcCCCHHHHHHHHHHHHHHcCCCeEEEe
Q 004826 619 EKQRVALARAFLKAPPILLCDEA-TSALDSTTEAEILNALKSLANNRTSIFI 669 (728)
Q Consensus 619 QrQRIaIARALl~~p~ILILDEa-TSaLD~~tE~~I~~~L~~l~~~~TvIvI 669 (728)
+-||.+|+++...+++++|+||| ++++|...-..+.+..+....+.+++++
T Consensus 167 ~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~ 218 (295)
T 1ls1_A 167 SIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVL 218 (295)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEE
Confidence 55789999998899999999999 9999998888887777666566665555
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.12 E-value=5.2e-11 Score=126.45 Aligned_cols=98 Identities=19% Similarity=0.277 Sum_probs=73.3
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCC
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGR 557 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~ 557 (728)
++++.++|+.++|||++||||||+++.|++++.+..|+|.+.+.|.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 3555788999999999999999999999999999999999988765321 011
Q ss_pred CCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHH---HHHHHhccCCC
Q 004826 558 LSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRV---ALARAFLKAPP 634 (728)
Q Consensus 558 ~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRI---aIARALl~~p~ 634 (728)
+++...++..++ | . + .. .|||+.|++ +|+||+.++|+
T Consensus 149 -----eqL~~~~~~~gl-------~----~-~----~~-------------------~s~~~~~~v~~~al~~a~~~~~d 188 (306)
T 1vma_A 149 -----EQLKIWGERVGA-------T----V-I----SH-------------------SEGADPAAVAFDAVAHALARNKD 188 (306)
T ss_dssp -----HHHHHHHHHHTC-------E----E-E----CC-------------------STTCCHHHHHHHHHHHHHHTTCS
T ss_pred -----HHHHHHHHHcCC-------c----E-E----ec-------------------CCccCHHHHHHHHHHHHHhcCCC
Confidence 222222222221 1 1 0 01 789999999 99999999999
Q ss_pred EEEEeCcCc
Q 004826 635 ILLCDEATS 643 (728)
Q Consensus 635 ILILDEaTS 643 (728)
++|+|||..
T Consensus 189 vvIiDtpg~ 197 (306)
T 1vma_A 189 VVIIDTAGR 197 (306)
T ss_dssp EEEEEECCC
T ss_pred EEEEECCCc
Confidence 999999984
No 153
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.08 E-value=4.6e-12 Score=124.58 Aligned_cols=128 Identities=21% Similarity=0.373 Sum_probs=70.3
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCC-------------CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~-------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 551 (728)
|+.++|+||||||||||+++|+|+++ |.+|++ +|.++...+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 889986 99888888888777654 3778888888888
Q ss_pred HHHcCCCCCCHHHHHHHHHHhc---c------HHHHHh--------------CCCcccchhhccccccchhHHHhhhhcc
Q 004826 552 NIRYGRLSATEEEVYDAARRAA---I------HDTIMN--------------FPAKYSTVVGERGLKGRSLLYIQKKLER 608 (728)
Q Consensus 552 NI~~g~~~~sdeei~~A~~~a~---l------~~~I~~--------------LP~G~dT~vgE~G~~~~~~~~~~~~~~~ 608 (728)
|+ ||.+ .+++.++++... + ...+.. -++-+...+-+||..
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~------------- 138 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTE------------- 138 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC--------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCC-------------
Confidence 86 7754 444544444311 1 111222 124555556666654
Q ss_pred CCCCCCCChhHHHHHHHHHHhc-----cCCCEEEEeC
Q 004826 609 RPLFVSLSGGEKQRVALARAFL-----KAPPILLCDE 640 (728)
Q Consensus 609 ~~~~~~LSGGQrQRIaIARALl-----~~p~ILILDE 640 (728)
-....+||++-|+.-+ +.++.+|..+
T Consensus 139 ------~~~~i~~rl~~~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 139 ------TEESINKRLSAAQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------------------------CCCCSEEEECS
T ss_pred ------CHHHHHHHHHHHHHHHHhhcccCCcEEEECc
Confidence 5677888999998766 5567777654
No 154
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.06 E-value=4.4e-11 Score=133.89 Aligned_cols=65 Identities=14% Similarity=0.142 Sum_probs=56.5
Q ss_pred EEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH
Q 004826 460 QFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL 528 (728)
Q Consensus 460 ~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~ 528 (728)
++.++++.. .++|+|+||+|++ +++||+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455665532 3479999999999 9999999999999999999999999999999999999876553
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.04 E-value=1.8e-10 Score=121.82 Aligned_cols=139 Identities=15% Similarity=0.133 Sum_probs=92.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCH
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATE 562 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sd 562 (728)
++|+.+++||++||||||++..|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999998888 35777888873 333333332
Q ss_pred HHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeCcC
Q 004826 563 EEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDEAT 642 (728)
Q Consensus 563 eei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDEaT 642 (728)
..++..+ +|. .. . .+ ++..+.+|+++ ++|+++|+| |
T Consensus 155 ----~~~~~~g-------l~~----~~-----~-------------------~~-~~~l~~al~~~--~~~dlvIiD--T 190 (296)
T 2px0_A 155 ----TYAELLQ-------APL----EV-----C-------------------YT-KEEFQQAKELF--SEYDHVFVD--T 190 (296)
T ss_dssp ----HHHTTTT-------CCC----CB-----C-------------------SS-HHHHHHHHHHG--GGSSEEEEE--C
T ss_pred ----HHHHhcC-------CCe----Ee-----c-------------------CC-HHHHHHHHHHh--cCCCEEEEe--C
Confidence 2111111 110 00 0 12 24457788875 999999999 9
Q ss_pred cCCCHHHHHHHHHHHHHHc---CCCeEEEe--ccCchHHhh-cCeEEEEeCCEEEEE
Q 004826 643 SALDSTTEAEILNALKSLA---NNRTSIFI--AHRLTTAMQ-CDEIIVLENGKVIEQ 693 (728)
Q Consensus 643 SaLD~~tE~~I~~~L~~l~---~~~TvIvI--aHRLsti~~-aD~IiVld~G~Ive~ 693 (728)
+++|+..+..+.+..+-+. .+.+++++ +|....+.. +|++..++.|.||-.
T Consensus 191 ~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 191 AGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp CCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred CCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 9999876655544332221 33456666 899877765 787766777888753
No 156
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.00 E-value=3.2e-11 Score=119.71 Aligned_cols=82 Identities=21% Similarity=0.320 Sum_probs=69.0
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCC-------------CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCc
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFD-------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFN 546 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~-------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~ 546 (728)
+...+|+.++|+||||||||||+++|++.++ |..|+ +||+|..-++.+.+++.+ .|+.+|+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 4456899999999999999999999999987 78898 899999999999999876 69999999
Q ss_pred ccHHHHHHcCCCCCCHHHHHHHHH
Q 004826 547 DTIFHNIRYGRLSATEEEVYDAAR 570 (728)
Q Consensus 547 gTIreNI~~g~~~~sdeei~~A~~ 570 (728)
+++.+| .||.| .+.+.++++
T Consensus 89 ~~~~~n-~YGt~---~~~v~~~l~ 108 (197)
T 3ney_A 89 GSYQGN-MFGTK---FETVHQIHK 108 (197)
T ss_dssp EEETTE-EEEEE---HHHHHHHHH
T ss_pred hhhhce-ecccc---hhhHHHHHh
Confidence 999999 49964 444544443
No 157
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.99 E-value=5.5e-13 Score=139.62 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=96.9
Q ss_pred EEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcC
Q 004826 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (728)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q 540 (728)
++++...|. ...+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.+++++|
T Consensus 52 l~~l~~~~~-~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 126 (278)
T 1iy2_A 52 LKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFE 126 (278)
T ss_dssp HHHHHHHHH-CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHH
T ss_pred HHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHH
Confidence 455555553 346899999999999 99999999999999999999875 8999999988765555556677888888
Q ss_pred CCC-CC-cccHHHHH-HcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCC
Q 004826 541 DTV-LF-NDTIFHNI-RYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLF 612 (728)
Q Consensus 541 d~~-LF-~gTIreNI-~~g~~~~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~ 612 (728)
++. .+ .-++.||| .++.... ..++..+.+ ..++. .
T Consensus 127 ~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll~---------------~----------------- 169 (278)
T 1iy2_A 127 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------E----------------- 169 (278)
T ss_dssp HHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHHH---------------H-----------------
T ss_pred HHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHHH---------------H-----------------
Confidence 764 33 34667777 3432111 011111111 11111 1
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCc
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATS 643 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTS 643 (728)
|||||+||..||+|+..+|++ ||++.-
T Consensus 170 --lsgg~~~~~~i~~a~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 170 --MDGFEKDTAIVVMAATNRPDI--LDPALL 196 (278)
T ss_dssp --HTTCCTTCCEEEEEEESCTTS--SCHHHH
T ss_pred --HhCCCCCCCEEEEEecCCchh--CCHhHc
Confidence 999999999999999999987 687753
No 158
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.97 E-value=5e-11 Score=134.37 Aligned_cols=167 Identities=16% Similarity=0.185 Sum_probs=96.4
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHhc--CCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHH
Q 004826 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 477 ~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g--ly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 554 (728)
.+++++.++..+.|+|+|||||||+++.|.. +|.++.|++.+.++|.+......+.. =|+++. ++.+|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccc-eeecC--
Confidence 4778889999999999999999999998876 78888899999998888755544432 122221 11111
Q ss_pred cCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHH----------H
Q 004826 555 YGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRV----------A 624 (728)
Q Consensus 555 ~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRI----------a 624 (728)
.++..++++.+ ...+..-|+ .+.+.|... -..|-. +.. ..+||||+||. +
T Consensus 229 -------~~~a~~~L~~~-----~~EmerR~~-ll~~~Gv~~-i~~yn~-~~~-----~~~s~G~~~~~~~~~pg~~~~~ 288 (512)
T 2ius_A 229 -------MKDAANALRWC-----VNEMERRYK-LMSALGVRN-LAGYNE-KIA-----EADRMMRPIPDPYWKPGDSMDA 288 (512)
T ss_dssp -------HHHHHHHHHHH-----HHHHHHHHH-HHHHTTCSS-HHHHHH-HHH-----HHHHTTCCCBCTTC--------
T ss_pred -------HHHHHHHHHHH-----HHHHHHHHH-HHHHcCCcc-HHHHHH-HHH-----HHhhcCCcccccccccccchhc
Confidence 11222222111 000000110 111111110 000000 000 01788988763 4
Q ss_pred HHHHhccCCC-EEEEeCcCcCCCHHHHHHHHHHHHHH---c--CCCeEEEeccCch
Q 004826 625 LARAFLKAPP-ILLCDEATSALDSTTEAEILNALKSL---A--NNRTSIFIAHRLT 674 (728)
Q Consensus 625 IARALl~~p~-ILILDEaTSaLD~~tE~~I~~~L~~l---~--~~~TvIvIaHRLs 674 (728)
+|+++-..|. ++++||+++.+|.. .+.+.+.|.++ . .|.++|++|||.+
T Consensus 289 ~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 289 QHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp -CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 6788888898 78899999999843 23444444332 2 2779999999988
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.95 E-value=7.8e-13 Score=136.39 Aligned_cols=140 Identities=18% Similarity=0.201 Sum_probs=98.5
Q ss_pred EEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEE
Q 004826 459 IQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVV 538 (728)
Q Consensus 459 I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V 538 (728)
.+++++...|. ...+++++++++++| ++|+||+|||||||++.|++... .|.|.++|.++.+......++.++.+
T Consensus 26 ~~l~~l~~~~~-~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 100 (254)
T 1ixz_A 26 EELKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 100 (254)
T ss_dssp HHHHHHHHHHH-CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHH-CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHH
Confidence 44566666664 346899999999999 99999999999999999999875 89999999877655555556677888
Q ss_pred cCCCC-CC-cccHHHHH-HcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCC
Q 004826 539 PQDTV-LF-NDTIFHNI-RYGRLSA-----TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRP 610 (728)
Q Consensus 539 ~Qd~~-LF-~gTIreNI-~~g~~~~-----sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~ 610 (728)
+|+.. .+ .-++.||| .++.... ..++..+.+ ..++. .
T Consensus 101 ~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll~---------------~--------------- 145 (254)
T 1ixz_A 101 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------E--------------- 145 (254)
T ss_dssp HHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHHH---------------H---------------
T ss_pred HHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHHH---------------H---------------
Confidence 88754 33 34666777 4432110 111111111 11111 1
Q ss_pred CCCCCChhHHHHHHHHHHhccCCCEEEEeCcCcC
Q 004826 611 LFVSLSGGEKQRVALARAFLKAPPILLCDEATSA 644 (728)
Q Consensus 611 ~~~~LSGGQrQRIaIARALl~~p~ILILDEaTSa 644 (728)
|||||+||..||+|+..+|++ ||++.-.
T Consensus 146 ----l~g~~~~~~~i~~a~t~~p~~--ld~~l~r 173 (254)
T 1ixz_A 146 ----MDGFEKDTAIVVMAATNRPDI--LDPALLR 173 (254)
T ss_dssp ----HHTCCTTCCEEEEEEESCGGG--SCGGGGS
T ss_pred ----HhCCCCCCCEEEEEccCCchh--CCHHHcC
Confidence 899999999999999999987 7888753
No 160
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.92 E-value=1.4e-11 Score=121.29 Aligned_cols=37 Identities=30% Similarity=0.328 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHH
Q 004826 621 QRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS 659 (728)
Q Consensus 621 QRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 659 (728)
+...+||++.++|+++++| |||+|.++-..+++.|.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 3478899999999999999 999999999999988765
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.92 E-value=1.5e-12 Score=140.15 Aligned_cols=90 Identities=14% Similarity=0.221 Sum_probs=69.1
Q ss_pred EEEEEecCCceeeeeeeEEEeCC-------cEEEEECCCCccHHHHHHHHhcCC----CCCCCEEEECCEeCCCCCHHHH
Q 004826 463 NVHFSYLTERKILDGVSFVVPAG-------KSVAIVGTSGSGKSTILRLLFRSF----DTHSGSIRIDGQDICEVTLESL 531 (728)
Q Consensus 463 nVsF~Y~~~~~vL~~isl~I~~G-------e~vAIVG~SGSGKSTL~~LL~gly----~p~~G~I~idG~di~~i~~~~l 531 (728)
+++..|. .+.+++++++.|++| +.++|+||+|+|||||++.|++.. .|++|.+..++.|+..+.....
T Consensus 23 ~l~~~~g-~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~ 101 (334)
T 1in4_A 23 SLDEFIG-QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE 101 (334)
T ss_dssp SGGGCCS-CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCC
T ss_pred cHHHccC-cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHcc
Confidence 3333443 456899999999887 899999999999999999999988 6788888877766543321112
Q ss_pred hcceEEEcCCCCCCcccHHHHHH
Q 004826 532 RKSIGVVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 532 R~~Ia~V~Qd~~LF~gTIreNI~ 554 (728)
+..|.+++|...++. |+.|++.
T Consensus 102 ~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 102 RGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp TTCEEEEETGGGCCH-HHHHHHH
T ss_pred CCCEEEEcchhhcCH-HHHHHHH
Confidence 567999999888775 8888874
No 162
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.92 E-value=2e-10 Score=121.75 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=45.6
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEE---CCEeCCCCCHHHHhcceEEEcCCCCCCc-----ccHHH
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI---DGQDICEVTLESLRKSIGVVPQDTVLFN-----DTIFH 551 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~i---dG~di~~i~~~~lR~~Ia~V~Qd~~LF~-----gTIre 551 (728)
+++.+|++++|+|+||+|||||+|.|+|+..|..|+|.+ +|.++.... ..++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 888776543 222223899999997754 478 9
Q ss_pred HHH
Q 004826 552 NIR 554 (728)
Q Consensus 552 NI~ 554 (728)
||.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 983
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.89 E-value=5e-11 Score=121.06 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=53.1
Q ss_pred eEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCC--------HH
Q 004826 458 SIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVT--------LE 529 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~--------~~ 529 (728)
.|+++|++..|.. +|++++ +.++|+||||||||||+++|+|++.|++|+|.++|.++...+ ..
T Consensus 9 ~l~l~~~~~~~~~--------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFAR--------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEEE--------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccCC--------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 5888988765531 466667 899999999999999999999999999999999999884433 23
Q ss_pred HHhcceEEEcCC
Q 004826 530 SLRKSIGVVPQD 541 (728)
Q Consensus 530 ~lR~~Ia~V~Qd 541 (728)
.++..+++|+|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 357789999984
No 164
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.87 E-value=1.4e-10 Score=113.24 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=64.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEEE----------ECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIR----------IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I~----------idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 551 (728)
.+|+.++|+||||||||||+++|++++++ ..|.|. +||++...++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 37999999999999999999999999873 445543 47878888888888874 67999999999999
Q ss_pred HHHcCCCCCCHHHHHHHHH
Q 004826 552 NIRYGRLSATEEEVYDAAR 570 (728)
Q Consensus 552 NI~~g~~~~sdeei~~A~~ 570 (728)
| .||.+ .+++.++++
T Consensus 80 n-~yg~~---~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIHE 94 (180)
T ss_dssp E-EEEEE---HHHHHHHHH
T ss_pred c-ccccc---HHHHHHHHH
Confidence 9 57754 455655544
No 165
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.87 E-value=1e-10 Score=135.82 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=103.3
Q ss_pred CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCC-CEEEECCEeCCCCCHHHHhcceEEEcCCCC------
Q 004826 471 ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHS-GSIRIDGQDICEVTLESLRKSIGVVPQDTV------ 543 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~-G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~------ 543 (728)
...+++++++.+++|+.+.|+||+|+|||||++.|+++.++.. |.+.+++.+.... ...++++||...
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHH
Confidence 4568999999999999999999999999999999999999988 8899988766544 346888887541
Q ss_pred ----------------CC-cccHHHHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhh
Q 004826 544 ----------------LF-NDTIFHNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKL 606 (728)
Q Consensus 544 ----------------LF-~gTIreNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~ 606 (728)
.| ..++.+|+..++...... +++......+...+| .+
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~------------~~v~~~~~~~~~L~G--------------~~ 174 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKA------------PFIDATGAHAGALLG--------------DV 174 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTTCSSC------------CEEECTTCCHHHHHC--------------EE
T ss_pred HHHhhccchhhhhhcccccccccccceeeccccCCCC------------CEEEcCCCCHHhcCc--------------eE
Confidence 11 112222222221100000 000000000111111 01
Q ss_pred ccCCC-CCCCChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHH
Q 004826 607 ERRPL-FVSLSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKS 659 (728)
Q Consensus 607 ~~~~~-~~~LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~ 659 (728)
++.+. ...+|+|++|++..++....++.+|+|||... |++.....+.+.|++
T Consensus 175 ~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 175 RHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CCCCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred EechhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 11100 01289999999999999999999999999988 799998888888874
No 166
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.84 E-value=1.2e-11 Score=135.33 Aligned_cols=168 Identities=13% Similarity=0.146 Sum_probs=108.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhc------------CCCCCCCEEEECCEeCCCCCH-HHHhcc---eEEEcCCCCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFR------------SFDTHSGSIRIDGQDICEVTL-ESLRKS---IGVVPQDTVL 544 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~g------------ly~p~~G~I~idG~di~~i~~-~~lR~~---Ia~V~Qd~~L 544 (728)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. ..-++. ...+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 568899999999999999999999999 678999999998843211100 000111 2355666665
Q ss_pred Ccc-cHHHHHHcCCCCCCHHHHHHHHHHhcc-HHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHH
Q 004826 545 FND-TIFHNIRYGRLSATEEEVYDAARRAAI-HDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQR 622 (728)
Q Consensus 545 F~g-TIreNI~~g~~~~sdeei~~A~~~a~l-~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQR 622 (728)
..+ |..|++ . .+....++.+.. -..+.. .+ ...- ..+||+.
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~il~Vvd~----~~---d~~i-------------------~~v~~~~--- 138 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDAIYQVVRA----FD---DAEI-------------------IHVEGDV--- 138 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSEEEEEEEC----CC---TTCS-------------------SCCSSSS---
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHHHHHHHhc----cc---ccee-------------------eeecccc---
Confidence 542 222211 1 123333333321 111111 11 0111 1256653
Q ss_pred HHHHHHhccCC--CEEEEeCcCcCCCHHHHHHHHHHHHHH-cC-CCeEEEeccCchHHhh-cCeEE-EEeCC-EEEEEcC
Q 004826 623 VALARAFLKAP--PILLCDEATSALDSTTEAEILNALKSL-AN-NRTSIFIAHRLTTAMQ-CDEII-VLENG-KVIEQGS 695 (728)
Q Consensus 623 IaIARALl~~p--~ILILDEaTSaLD~~tE~~I~~~L~~l-~~-~~TvIvIaHRLsti~~-aD~Ii-Vld~G-~Ive~Gt 695 (728)
|| +|+++||+++.+|.++-+...+.++.. .+ +.|+ ++|.+..+.. ||+|. +|++| +++..|+
T Consensus 139 ---------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 139 ---------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred ---------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 89 999999999999999998888888876 44 4553 4999987655 89999 99999 8876665
Q ss_pred h
Q 004826 696 H 696 (728)
Q Consensus 696 h 696 (728)
.
T Consensus 208 ~ 208 (392)
T 1ni3_A 208 W 208 (392)
T ss_dssp C
T ss_pred C
Confidence 3
No 167
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.83 E-value=3.9e-10 Score=112.32 Aligned_cols=75 Identities=19% Similarity=0.213 Sum_probs=56.8
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCC
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLS 559 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~ 559 (728)
=++++|+.++|+|+|||||||++++|.+.++ .+.+++||+++|.+ +|+.++.+.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~~ 69 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKNG 69 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTTS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccccC
Confidence 3688999999999999999999999999875 48999999999987 677766544
Q ss_pred CCHHHHHHHHHHhccHHHHHh
Q 004826 560 ATEEEVYDAARRAAIHDTIMN 580 (728)
Q Consensus 560 ~sdeei~~A~~~a~l~~~I~~ 580 (728)
..+.++.++++...+.+++..
T Consensus 70 ~~~~~~~~~~~~~~l~~~i~~ 90 (207)
T 2qt1_A 70 FLQYDVLEALNMEKMMSAISC 90 (207)
T ss_dssp CBCCSSGGGBCHHHHHHHHHH
T ss_pred CChhHHHHHhHHHHHHHHHHH
Confidence 433334444445555555544
No 168
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.81 E-value=6.5e-10 Score=113.09 Aligned_cols=69 Identities=20% Similarity=0.257 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhc--cCCCEEEEeCcCcCC--CHHHHHHHHHHHHHH--cCCCeEEEeccCchH---------HhhcCeEE
Q 004826 619 EKQRVALARAFL--KAPPILLCDEATSAL--DSTTEAEILNALKSL--ANNRTSIFIAHRLTT---------AMQCDEII 683 (728)
Q Consensus 619 QrQRIaIARALl--~~p~ILILDEaTSaL--D~~tE~~I~~~L~~l--~~~~TvIvIaHRLst---------i~~aD~Ii 683 (728)
..+.+..++.++ .+|+++++|++|+-+ |+...+.....+.+. ..++|+|+++|.... ...||.|+
T Consensus 113 ~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi 192 (247)
T 2dr3_A 113 IREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGII 192 (247)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEE
Confidence 334445555555 479999999999987 543334444444443 257999999998764 35699999
Q ss_pred EEeC
Q 004826 684 VLEN 687 (728)
Q Consensus 684 Vld~ 687 (728)
.|+.
T Consensus 193 ~L~~ 196 (247)
T 2dr3_A 193 RLDL 196 (247)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9964
No 169
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.80 E-value=9.2e-10 Score=128.97 Aligned_cols=75 Identities=21% Similarity=0.180 Sum_probs=65.6
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHH
Q 004826 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 479 sl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 554 (728)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++...+.++.+++++|.+.++..+++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 467889999999999999999999999987765 78999 8999999999999999999999999999888777763
No 170
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.75 E-value=1.9e-08 Score=112.58 Aligned_cols=178 Identities=16% Similarity=0.137 Sum_probs=111.1
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC-EEEECCEeCCCCCHHHHhcce-EEEcCCCCCCcccHH
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDGQDICEVTLESLRKSI-GVVPQDTVLFNDTIF 550 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G-~I~idG~di~~i~~~~lR~~I-a~V~Qd~~LF~gTIr 550 (728)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+. +.+...+++.+ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-H
Confidence 457777778999999999999999999999999887766555 5665542 34445554432 111110 0 1
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhc
Q 004826 551 HNIRYGRLSATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFL 630 (728)
Q Consensus 551 eNI~~g~~~~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl 630 (728)
+++.-| ..++++.....+.+ +.+...|--.+ +. .. +|++|.+ +.||++.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~l~i~----d~-~~-------------------~s~~~i~--~~~~~l~ 309 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAGIYID----DT-PS-------------------IRVSDIR--AKCRRLK 309 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSCEEEE----CC-TT-------------------CCHHHHH--HHHHHHH
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCCEEEE----CC-CC-------------------CCHHHHH--HHHHHHH
Confidence 233334 34566544333222 22222221111 11 12 8999876 6778877
Q ss_pred --cCCCEEEEeCcCcCCCHH--------HHHHHHHHHHHHc--CCCeEEEecc-----------Cch---------HHhh
Q 004826 631 --KAPPILLCDEATSALDST--------TEAEILNALKSLA--NNRTSIFIAH-----------RLT---------TAMQ 678 (728)
Q Consensus 631 --~~p~ILILDEaTSaLD~~--------tE~~I~~~L~~l~--~~~TvIvIaH-----------RLs---------ti~~ 678 (728)
.+|+++|+|+++.-.++. .-..+.+.|+++. .++|+|+++| |+. .-..
T Consensus 310 ~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~ 389 (454)
T 2r6a_A 310 QESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQD 389 (454)
T ss_dssp TTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHH
T ss_pred HHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhh
Confidence 579999999999987431 2245556666553 3799999999 132 2346
Q ss_pred cCeEEEEeCCEEE
Q 004826 679 CDEIIVLENGKVI 691 (728)
Q Consensus 679 aD~IiVld~G~Iv 691 (728)
||.|++|..++.-
T Consensus 390 aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 390 ADIVAFLYRDDYY 402 (454)
T ss_dssp CSEEEEEEETTC-
T ss_pred CCEEEEEeccccc
Confidence 9999999877653
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.74 E-value=2e-08 Score=108.54 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=51.1
Q ss_pred HHHHHHHHhccC--CCEEEEeCcCcCC----------CH---HHHHHHHHHHHHH-----cCCCeEEEeccCch------
Q 004826 621 QRVALARAFLKA--PPILLCDEATSAL----------DS---TTEAEILNALKSL-----ANNRTSIFIAHRLT------ 674 (728)
Q Consensus 621 QRIaIARALl~~--p~ILILDEaTSaL----------D~---~tE~~I~~~L~~l-----~~~~TvIvIaHRLs------ 674 (728)
|-+.++++++++ |+++|+||+|+-+ |+ ..++.+.+.++++ ..++|+|+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 456788888765 9999999999998 32 1222344444443 24899999999543
Q ss_pred ----------HH-hhcCeEEEEeCCEEEEEcC
Q 004826 675 ----------TA-MQCDEIIVLENGKVIEQGS 695 (728)
Q Consensus 675 ----------ti-~~aD~IiVld~G~Ive~Gt 695 (728)
.+ ..||.++.+.+++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 13 3599999998887765554
No 172
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.71 E-value=7.3e-11 Score=128.69 Aligned_cols=143 Identities=14% Similarity=0.173 Sum_probs=88.3
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 551 (728)
.++|+++|+++++|+.++|+||+|||||||+++|++. .+|.+..-+ . +.+.++..+++++|...+| .|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--L---PLDRLNFELGVAIDQFLVV----FE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--c---cchhHHHHHHHhcchhHHH----HH
Confidence 3689999999999999999999999999999999985 478776511 1 1122334588899987653 34
Q ss_pred HHHcCCC---CC-CHHHHHHHHHHhccHHHHH---------hCCCcccchhhccccccchhHHHhhhhccCCCCCCCChh
Q 004826 552 NIRYGRL---SA-TEEEVYDAARRAAIHDTIM---------NFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGG 618 (728)
Q Consensus 552 NI~~g~~---~~-sdeei~~A~~~a~l~~~I~---------~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGG 618 (728)
++....+ .. +.+.+. ....+.+.+. +.|+-.+..... | +++.+- -.+++|
T Consensus 224 d~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~p-g-----------~ld~~~--~~l~~~ 286 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPP-G-----------IVTMNE--YSVPKT 286 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCC-E-----------EEEECS--CCCCHH
T ss_pred HHHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcC-c-----------ccChhH--HhhcHH
Confidence 4444322 01 000110 1122223221 111111110000 0 011111 128999
Q ss_pred HHHHHHHHHHhccCCCEEE-EeCcCc
Q 004826 619 EKQRVALARAFLKAPPILL-CDEATS 643 (728)
Q Consensus 619 QrQRIaIARALl~~p~ILI-LDEaTS 643 (728)
.+||++.+.+++.+|++++ ||+|+.
T Consensus 287 ~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 287 LQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 9999999999999999998 999987
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.65 E-value=1.3e-09 Score=109.13 Aligned_cols=72 Identities=28% Similarity=0.363 Sum_probs=57.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEEE----------ECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSIR----------IDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFH 551 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I~----------idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIre 551 (728)
++|+.++|+||||||||||+++|++.++| ..+.+. .+|++...++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 467777777888887765 6888899999888
Q ss_pred HHHcCCC
Q 004826 552 NIRYGRL 558 (728)
Q Consensus 552 NI~~g~~ 558 (728)
| .||.+
T Consensus 83 ~-~yg~~ 88 (208)
T 3tau_A 83 N-YYGTP 88 (208)
T ss_dssp E-EEEEE
T ss_pred c-cCCCc
Confidence 8 57754
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.63 E-value=5.7e-09 Score=102.92 Aligned_cols=36 Identities=33% Similarity=0.365 Sum_probs=31.3
Q ss_pred HHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH
Q 004826 623 VALARAFLKAPPILLCDEATSALDSTTEAEILNALKSL 660 (728)
Q Consensus 623 IaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l 660 (728)
...||++.++|+++++| |||+|.+.-..+++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45699999999999999 9999999998888877653
No 175
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.62 E-value=2.8e-09 Score=109.88 Aligned_cols=52 Identities=31% Similarity=0.489 Sum_probs=36.1
Q ss_pred eEEEEEE-EEEecCCceeeeeeeEEEeC---CcEEEEECCCCccHHHHHHHHhcCC
Q 004826 458 SIQFDNV-HFSYLTERKILDGVSFVVPA---GKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 458 ~I~f~nV-sF~Y~~~~~vL~~isl~I~~---Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++++|| +|+|.++.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99995566899999999999 9999999999999999999998854
No 176
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.59 E-value=4.3e-09 Score=104.21 Aligned_cols=84 Identities=18% Similarity=0.195 Sum_probs=52.0
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCC-----------CCCccc
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT-----------VLFNDT 548 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~-----------~LF~gT 548 (728)
++|++|+.++|+|+|||||||++++|.+++.|+.| +.+ +...++... ..+..+++++|++ .++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMRE-GEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCCT-TCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCCC-CccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 47899999999999999999999999999977655 222 222332221 1223467777764 445556
Q ss_pred HHHHHHcCCCCCCHHHHHHHHH
Q 004826 549 IFHNIRYGRLSATEEEVYDAAR 570 (728)
Q Consensus 549 IreNI~~g~~~~sdeei~~A~~ 570 (728)
+++| .||. ..+++.++++
T Consensus 78 ~~~~-~~g~---~~~~i~~~l~ 95 (207)
T 2j41_A 78 YVGN-YYGT---PVQYVKDTMD 95 (207)
T ss_dssp ETTE-EEEE---EHHHHHHHHH
T ss_pred ECCe-ecCC---CHHHHHHHHH
Confidence 6666 3553 2455555443
No 177
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.57 E-value=5.4e-09 Score=101.63 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=63.2
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCE--eCCCCC----HHHHhcceEEEcCCCC------
Q 004826 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQ--DICEVT----LESLRKSIGVVPQDTV------ 543 (728)
Q Consensus 476 ~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~--di~~i~----~~~lR~~Ia~V~Qd~~------ 543 (728)
+++++++.+| .++|||+||||||||++.|.++..+..|...-.+. ++-... ....+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999988787775433221 111111 0124567999999863
Q ss_pred ----CCcccHHHH----HHcCCCCCCHHHHHHHHHHhccH
Q 004826 544 ----LFNDTIFHN----IRYGRLSATEEEVYDAARRAAIH 575 (728)
Q Consensus 544 ----LF~gTIreN----I~~g~~~~sdeei~~A~~~a~l~ 575 (728)
.+..++..+ +.......+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCC
Confidence 222223211 11111234677788887777664
No 178
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.56 E-value=2.3e-09 Score=122.43 Aligned_cols=89 Identities=24% Similarity=0.262 Sum_probs=62.6
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC-EEE-ECCEeCCC-------CCH---HHHhcceEEEcCCCCCCcc
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIR-IDGQDICE-------VTL---ESLRKSIGVVPQDTVLFND 547 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G-~I~-idG~di~~-------i~~---~~lR~~Ia~V~Qd~~LF~g 547 (728)
..+++|+.++|+|+||||||||+++|++.+.|++| +|. +||.++.+ ++. ..+++.+++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 35889999999999999999999999999999997 784 99977643 232 23456789998872
Q ss_pred cHHHHHHcCCCC----CCHHHHHHHHHHhc
Q 004826 548 TIFHNIRYGRLS----ATEEEVYDAARRAA 573 (728)
Q Consensus 548 TIreNI~~g~~~----~sdeei~~A~~~a~ 573 (728)
+..+|+.+.... ...+++.++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 455666554321 12344555555544
No 179
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.47 E-value=9e-08 Score=104.02 Aligned_cols=144 Identities=19% Similarity=0.315 Sum_probs=82.8
Q ss_pred EEEEECCCCccHHHHHHHHhcCCC-----------CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCC----CcccHHH
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFD-----------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVL----FNDTIFH 551 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~-----------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~L----F~gTIre 551 (728)
+|+|||++|+|||||++.|+|... |+.|.|.++|.++. +....|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999865 67899999997652 33456666664431 33332 2
Q ss_pred HHHcCC-----CCCCHHH--HHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHH
Q 004826 552 NIRYGR-----LSATEEE--VYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVA 624 (728)
Q Consensus 552 NI~~g~-----~~~sdee--i~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIa 624 (728)
.+.-.+ -++++.. ..+..+. ..+.+..+. . .+.+..++.||++. +|+|++||+.
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~--~---------~~~p~ilV~NK~Dl------~~~~~~~~~~ 314 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIG--V---------SGKPILVTLNKIDK------INGDLYKKLD 314 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHT--C---------CSCCEEEEEECGGG------CCSCHHHHHH
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhC--c---------CCCCEEEEEECCCC------CCchHHHHHH
Confidence 222111 0122111 1111111 112222210 0 00111112222221 6888999888
Q ss_pred HH----HHh-ccCCCEEEEeCcCcCCCHHHHHHHHHHHHHH
Q 004826 625 LA----RAF-LKAPPILLCDEATSALDSTTEAEILNALKSL 660 (728)
Q Consensus 625 IA----RAL-l~~p~ILILDEaTSaLD~~tE~~I~~~L~~l 660 (728)
++ +++ ..+|++ +||||+|.+.-..+++.|.+.
T Consensus 315 ~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 315 LVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp HHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHH
Confidence 87 776 545554 899999999998998888764
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.45 E-value=3.7e-09 Score=104.87 Aligned_cols=52 Identities=27% Similarity=0.401 Sum_probs=45.4
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEE--EECCEeCC
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI--RIDGQDIC 524 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I--~idG~di~ 524 (728)
..+.+..++..++|+.++|+|+|||||||++++|++.+. ..|.+ ++||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 345677888889999999999999999999999999987 78988 99986554
No 181
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.44 E-value=2.1e-08 Score=99.43 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=44.5
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCC
Q 004826 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF 545 (728)
Q Consensus 479 sl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF 545 (728)
.++.++|+.++|+|+|||||||++++|++.+ |.+.+||.++..- ....+..+++++|++.++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 3667899999999999999999999999987 9999999877531 111223568888875443
No 182
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.43 E-value=5e-08 Score=104.14 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=58.1
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCH----HHH-----hcceEEE-cCCCC
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTL----ESL-----RKSIGVV-PQDTV 543 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~----~~l-----R~~Ia~V-~Qd~~ 543 (728)
+++++||++++|+.++|+|++|+||||++..|++.+.+..|+|++.+.|+..... ..| +..+.++ +|+..
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3467888999999999999999999999999999999999999999988865432 344 6678999 66643
Q ss_pred C
Q 004826 544 L 544 (728)
Q Consensus 544 L 544 (728)
.
T Consensus 174 ~ 174 (320)
T 1zu4_A 174 A 174 (320)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.41 E-value=3e-08 Score=106.94 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=60.6
Q ss_pred CceEEEEEEEEEecCCceeee--------------eeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCC-CC-EEEEC
Q 004826 456 GGSIQFDNVHFSYLTERKILD--------------GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTH-SG-SIRID 519 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~--------------~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~-~G-~I~id 519 (728)
.+.|+|+||+|.||.++.+|+ |+++.|.+||+++|||+||+|||||+++|+++..-. ++ .+-+-
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 468999999999998889999 999999999999999999999999999999975311 12 23234
Q ss_pred CEeCCCCCHHHHhcce
Q 004826 520 GQDICEVTLESLRKSI 535 (728)
Q Consensus 520 G~di~~i~~~~lR~~I 535 (728)
+++-+.-...++.+.+
T Consensus 211 lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 211 LIDERPEEVTEMQRLV 226 (422)
T ss_dssp EESSCHHHHHHHHTTC
T ss_pred EecCChHHHHHHHHHh
Confidence 4444443444444443
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.40 E-value=2.3e-07 Score=100.52 Aligned_cols=46 Identities=26% Similarity=0.342 Sum_probs=36.2
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc--CCCCCCCEEEECCE
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR--SFDTHSGSIRIDGQ 521 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g--ly~p~~G~I~idG~ 521 (728)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.+.-...
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 57899999998 999999999999999999999 77888887754443
No 185
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.35 E-value=7.5e-09 Score=116.77 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=66.8
Q ss_pred EEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcC
Q 004826 461 FDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQ 540 (728)
Q Consensus 461 f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Q 540 (728)
++++...|. +..+++++++++++| +.|+||+|+|||||++.|++... .|.|.++|.++.+......++.+..++|
T Consensus 43 l~~lv~~l~-~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 43 LKEIVEFLK-NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp HHHHHHHHH-CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred HHHHHHHhh-chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 344443343 345789999999999 99999999999999999999875 8899999988877655556667778888
Q ss_pred CCC-CCc-ccHHHHH
Q 004826 541 DTV-LFN-DTIFHNI 553 (728)
Q Consensus 541 d~~-LF~-gTIreNI 553 (728)
+.. .+. -.+.|+|
T Consensus 118 ~a~~~~p~il~IDEI 132 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEI 132 (499)
T ss_dssp TSSSSSSCEEEEECG
T ss_pred HHHhcCCCEEEEehH
Confidence 764 232 3556677
No 186
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.34 E-value=1.9e-07 Score=92.62 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHH---hhcCeEEEEe
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA---MQCDEIIVLE 686 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti---~~aD~IiVld 686 (728)
.+.|+.+|..+++.++.+|..+-.+ ++.+++...+.+.+.+... .+.++|+-+|-+... +.||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999999888654333 3355666666666555543 356788778877553 6799999996
No 187
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.33 E-value=8e-09 Score=110.14 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=46.2
Q ss_pred ceeeeeeeEEEeCCc------EEEEECCCCccHHHHHHHHhcCCCC--CCCEEEECCEeCCCCCHHHHhcceEEEcCCCC
Q 004826 472 RKILDGVSFVVPAGK------SVAIVGTSGSGKSTILRLLFRSFDT--HSGSIRIDGQDICEVTLESLRKSIGVVPQDTV 543 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge------~vAIVG~SGSGKSTL~~LL~gly~p--~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~ 543 (728)
.+.|++++..+.+++ .+||+|||||||||+++.|.+++++ ++|. +++++||.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeeccc
Confidence 456777777777766 8999999999999999999999874 4443 566677776
Q ss_pred CCcccHHH
Q 004826 544 LFNDTIFH 551 (728)
Q Consensus 544 LF~gTIre 551 (728)
.+.....+
T Consensus 134 ~~~~~~l~ 141 (321)
T 3tqc_A 134 LYSNAKLE 141 (321)
T ss_dssp BCCHHHHH
T ss_pred ccchhhhh
Confidence 66554444
No 188
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.31 E-value=2.6e-07 Score=99.72 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=45.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEE-EECCEeCCCCCHHHHhcceEEEcCCCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDGQDICEVTLESLRKSIGVVPQDTV 543 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I-~idG~di~~i~~~~lR~~Ia~V~Qd~~ 543 (728)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++|+.+.. ...+.+++++.+|+..
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSLL 117 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhhh
Confidence 389999999999999999999999999888877865 66664322 2235566777766543
No 189
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.31 E-value=7.8e-07 Score=96.33 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHHhccCCCEEEEe-CcCcCCCHHHHHHHHHHHHHHcCCCeEEEec--cCch
Q 004826 615 LSGGEKQRVALARAFLKAPPILLCD-EATSALDSTTEAEILNALKSLANNRTSIFIA--HRLT 674 (728)
Q Consensus 615 LSGGQrQRIaIARALl~~p~ILILD-EaTSaLD~~tE~~I~~~L~~l~~~~TvIvIa--HRLs 674 (728)
+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.....++.+|+|. |++.
T Consensus 232 ~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 232 RNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 8999999887 66666788899999 9999999999888888887766688899998 7764
No 190
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.29 E-value=2.6e-07 Score=91.30 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=24.9
Q ss_pred EecC--CceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 467 SYLT--ERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 467 ~Y~~--~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|++ ..++++||||++++|+.++|+|++||||||+.+.|++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4553 458999999999999999999999999999999999866
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.29 E-value=6e-07 Score=100.66 Aligned_cols=60 Identities=20% Similarity=0.217 Sum_probs=42.5
Q ss_pred hhHHHHHHHHHHhccCCCEEEEeCcCc----------CCCHHHHHHHHHHHHHH-----cCCCeEEEeccCchHH
Q 004826 617 GGEKQRVALARAFLKAPPILLCDEATS----------ALDSTTEAEILNALKSL-----ANNRTSIFIAHRLTTA 676 (728)
Q Consensus 617 GGQrQRIaIARALl~~p~ILILDEaTS----------aLD~~tE~~I~~~L~~l-----~~~~TvIvIaHRLsti 676 (728)
|++++|-.+++|...+|.||++||+.+ +.|.+.++.+.+-+..+ ..+..+|..||+.+.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 567899999999999999999999944 56666665555544433 2456788889998654
No 192
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.25 E-value=1.7e-06 Score=95.51 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=92.0
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHH-HhcceEEEcCCCCCCcccHHHHHH
Q 004826 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLES-LRKSIGVVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 476 ~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~-lR~~Ia~V~Qd~~LF~gTIreNI~ 554 (728)
++++|+ +|+.++++|++||||||++..|++.+.+..|+|.+.+.|+......+ |+.. .=+.|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999999888876543322 2210 0011221
Q ss_pred cC--CCCCCHHHHHHHHHHhccHHHHHhC-CCcccchhhccccccchhHHHhhhhccCCCCCCCC---hhHHHHHHHHHH
Q 004826 555 YG--RLSATEEEVYDAARRAAIHDTIMNF-PAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLS---GGEKQRVALARA 628 (728)
Q Consensus 555 ~g--~~~~sdeei~~A~~~a~l~~~I~~L-P~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LS---GGQrQRIaIARA 628 (728)
+. .+..+..++. .+.++.+ .++||..|-+-.-. ++ .-..+..+++++
T Consensus 156 v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~-------------------l~~d~~l~~el~~i~~~ 208 (425)
T 2ffh_A 156 VLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGR-------------------LQIDEPLMGELARLKEV 208 (425)
T ss_dssp EEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCC-------------------SSCCHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCc-------------------ccccHHHHHHHHHhhhc
Confidence 11 1122334441 1233333 36788766654322 22 245677788998
Q ss_pred hccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEecc
Q 004826 629 FLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAH 671 (728)
Q Consensus 629 Ll~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaH 671 (728)
+..++-+|++| ++++.|..... +.+... -+.|-|++++
T Consensus 209 ~~pd~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 209 LGPDEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HCCSEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred cCCceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 87777788888 55665555332 233321 3457777775
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.24 E-value=8.9e-07 Score=105.34 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=52.0
Q ss_pred CCCChhHHHHHHHHHHhccCCCEEEEeCcCc-CCCHHHHHHHHHHHHHHcCC-CeEEE-eccCchHHh
Q 004826 613 VSLSGGEKQRVALARAFLKAPPILLCDEATS-ALDSTTEAEILNALKSLANN-RTSIF-IAHRLTTAM 677 (728)
Q Consensus 613 ~~LSGGQrQRIaIARALl~~p~ILILDEaTS-aLD~~tE~~I~~~L~~l~~~-~TvIv-IaHRLsti~ 677 (728)
.-+|+|+.+|..++++++.+++++|+|||.. +||.+.-..+.+.+....++ +++++ .||....+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 3479999999999999999999999999997 89988777777777665544 55555 478776554
No 194
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.21 E-value=5.1e-08 Score=98.89 Aligned_cols=64 Identities=22% Similarity=0.112 Sum_probs=48.9
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC------CHHH----HhcceEEEcCCCCCCc
Q 004826 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV------TLES----LRKSIGVVPQDTVLFN 546 (728)
Q Consensus 479 sl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i------~~~~----lR~~Ia~V~Qd~~LF~ 546 (728)
+.+.++|+.++|+|++||||||++++|.++ .|+|.+++.|...+ .... .++.+++++|++.+|.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 445689999999999999999999999998 79999999876432 1111 2456788888766543
No 195
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.17 E-value=6.8e-07 Score=95.48 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=25.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999877653
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.17 E-value=1.8e-08 Score=99.30 Aligned_cols=82 Identities=26% Similarity=0.351 Sum_probs=48.0
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC-CCC-H--HHHhcceEEEcCCCCCCcccHHHHHHcCCCCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC-EVT-L--ESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~-~i~-~--~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~ 560 (728)
...|+|+|++||||||+.++|... |...+|.-++. +.. . ..+.+.+ |+.+. +|++ ||..++....
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~~~ 76 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARLVF 76 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHHHh
Confidence 357999999999999999999985 77777653321 100 0 2333322 44444 6676 5555543334
Q ss_pred CHHHHHHHHHHhccHHHH
Q 004826 561 TEEEVYDAARRAAIHDTI 578 (728)
Q Consensus 561 sdeei~~A~~~a~l~~~I 578 (728)
++++.++.++ ...|++|
T Consensus 77 ~~~~~~~~l~-~~~~~~i 93 (203)
T 1uf9_A 77 SDPERLKALE-AVVHPEV 93 (203)
T ss_dssp TSHHHHHHHH-HHHHHHH
T ss_pred CCHHHHHHHH-HHhChHH
Confidence 4455555554 2344444
No 197
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.08 E-value=9.9e-07 Score=91.37 Aligned_cols=59 Identities=19% Similarity=0.154 Sum_probs=50.0
Q ss_pred HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEEe
Q 004826 622 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVLE 686 (728)
Q Consensus 622 RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVld 686 (728)
|++|||||..+|++++||||| |+++-..+.+ ....+.|+++++|..+....|||+++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9888655444 3446899999999999888889886664
No 198
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.00 E-value=9.2e-06 Score=87.05 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=66.5
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNI 553 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI 553 (728)
-|+.+.--++||+.+.|.|++|+|||||+.-++.-.....+. +.|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC-------------
Confidence 455555469999999999999999999998776543322222 333221
Q ss_pred HcCCCCCCHHHHHHHHHH--hccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhcc
Q 004826 554 RYGRLSATEEEVYDAARR--AAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLK 631 (728)
Q Consensus 554 ~~g~~~~sdeei~~A~~~--a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~ 631 (728)
+.+.+++..-+-. +++. ... +- .| . ||++++||++.|...+.
T Consensus 83 -----Ems~~ql~~Rlls~~~~v~--~~~--------l~-~g-~-------------------Ls~~e~~~l~~a~~~l~ 126 (338)
T 4a1f_A 83 -----EMSAEQLALRALSDLTSIN--MHD--------LE-SG-R-------------------LDDDQWENLAKCFDHLS 126 (338)
T ss_dssp -----SSCHHHHHHHHHHHHHCCC--HHH--------HH-HT-C-------------------CCHHHHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHhhCCC--HHH--------Hh-cC-C-------------------CCHHHHHHHHHHHHHHh
Confidence 2344554332211 1211 011 00 12 2 89999999999988888
Q ss_pred CCCEEEEeCcCcCCC
Q 004826 632 APPILLCDEATSALD 646 (728)
Q Consensus 632 ~p~ILILDEaTSaLD 646 (728)
+++++|.|+|+..+|
T Consensus 127 ~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 127 QKKLFFYDKSYVRIE 141 (338)
T ss_dssp HSCEEEECCTTCCHH
T ss_pred cCCeEEeCCCCCcHH
Confidence 899999998876544
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.97 E-value=1.3e-06 Score=84.09 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=39.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhc-ceEEEcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRK-SIGVVPQD 541 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~-~Ia~V~Qd 541 (728)
++|+.++|+|++||||||+++.|++.+ |.+.+|+.++.. ...+++ .+++++|+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~ 59 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLND 59 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCc
Confidence 479999999999999999999999875 889999876653 122222 34555554
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.97 E-value=1.4e-06 Score=86.18 Aligned_cols=49 Identities=22% Similarity=0.148 Sum_probs=42.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHH
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLE 529 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~ 529 (728)
..++|+.++|+|+|||||||+++.|.+++++..|.|.+.+.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 3678999999999999999999999999999999998887776555543
No 201
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.95 E-value=5.5e-06 Score=91.60 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=36.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (728)
++..++++|++||||||++.-|++.+.+..++|.+-+.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999999999988776653
No 202
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.85 E-value=4.2e-06 Score=90.12 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=25.4
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999887764
No 203
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.84 E-value=3.9e-05 Score=82.89 Aligned_cols=44 Identities=9% Similarity=0.053 Sum_probs=32.7
Q ss_pred cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc----CCCeEEEeccCchH
Q 004826 631 KAPPILLCDEATSALDSTTEAEILNALKSLA----NNRTSIFIAHRLTT 675 (728)
Q Consensus 631 ~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~----~~~TvIvIaHRLst 675 (728)
.+|.+|+|||+... |...-..+.+.+.+.. .+.++|+++|+...
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999886 8777777766665433 36788888998854
No 204
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.81 E-value=2.9e-06 Score=86.27 Aligned_cols=70 Identities=23% Similarity=0.323 Sum_probs=49.5
Q ss_pred CcEEEEECCCCccHHHHHHHHh---cCCCCCCCEE--------EECCEeCCCCC-HHHHhcceEEEc------CCCCCCc
Q 004826 485 GKSVAIVGTSGSGKSTILRLLF---RSFDTHSGSI--------RIDGQDICEVT-LESLRKSIGVVP------QDTVLFN 546 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~---gly~p~~G~I--------~idG~di~~i~-~~~lR~~Ia~V~------Qd~~LF~ 546 (728)
.-.++|+|||||||||+++.|+ |+.-.+.|.+ .-.|+|+.+.. ...+.+++.+++ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 3489999999999999999998 5555566665 34566666643 556666666666 5566766
Q ss_pred ccHHHHHH
Q 004826 547 DTIFHNIR 554 (728)
Q Consensus 547 gTIreNI~ 554 (728)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 67766553
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.78 E-value=1.9e-06 Score=83.40 Aligned_cols=41 Identities=32% Similarity=0.438 Sum_probs=34.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCC--EEEECCEeCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQDIC 524 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~di~ 524 (728)
++|+.++|+|++||||||++++|.+.+.| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999998866 67 7777875544
No 206
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.75 E-value=5.2e-06 Score=81.58 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=38.9
Q ss_pred EEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc----CCC----CCCCEEEECCEe
Q 004826 465 HFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SFD----THSGSIRIDGQD 522 (728)
Q Consensus 465 sF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g----ly~----p~~G~I~idG~d 522 (728)
+|+|++-.++++++|++.+++ +|++||++|+|||||++.+.+ .|. ++.+.+.++|.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 567887778999999998887 689999999999999999986 233 345666666643
No 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.70 E-value=0.00016 Score=75.50 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=45.3
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeCcCcCCCHHH----------HHHHHHHHHHHcC-----CCeEEEeccCchH-----
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDEATSALDSTT----------EAEILNALKSLAN-----NRTSIFIAHRLTT----- 675 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDEaTSaLD~~t----------E~~I~~~L~~l~~-----~~TvIvIaHRLst----- 675 (728)
++++++|-.+++|...+|.+|++||+.+-++... ...+...++.... +..+|..|++...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4677788888888888999999999988765432 1233444444321 2345666787543
Q ss_pred HhhcCeEEEEe
Q 004826 676 AMQCDEIIVLE 686 (728)
Q Consensus 676 i~~aD~IiVld 686 (728)
.+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34577776654
No 208
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.66 E-value=4.8e-06 Score=89.24 Aligned_cols=44 Identities=23% Similarity=0.358 Sum_probs=38.4
Q ss_pred CceeeeeeeEEEeCCcE--EEEECCCCccHHHHHHHHhcCCCCCCC
Q 004826 471 ERKILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSFDTHSG 514 (728)
Q Consensus 471 ~~~vL~~isl~I~~Ge~--vAIVG~SGSGKSTL~~LL~gly~p~~G 514 (728)
...+++.++..|+.|+. +.+.||+|+||||+++.+++...+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 34688899999999998 999999999999999999998766554
No 209
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.66 E-value=1.8e-05 Score=84.06 Aligned_cols=107 Identities=13% Similarity=0.159 Sum_probs=67.3
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHN 552 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreN 552 (728)
+.|+++.--++||+.+.|.|++|+|||||+.-++.-.- ..| ..+.|++
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-~~g------------------~~vl~~s------------- 103 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-DND------------------DVVNLHS------------- 103 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-TTT------------------CEEEEEE-------------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HcC------------------CeEEEEE-------------
Confidence 34666665689999999999999999999877764211 011 1233322
Q ss_pred HHcCCCCCCHHHHHHHHHHh--ccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhc
Q 004826 553 IRYGRLSATEEEVYDAARRA--AIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFL 630 (728)
Q Consensus 553 I~~g~~~~sdeei~~A~~~a--~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl 630 (728)
.+-+.+++.+-+... ++. +..+-.|- .. ||++++||++.|-..+
T Consensus 104 -----lE~s~~~l~~R~~~~~~~i~--~~~l~~~~--------~~-------------------l~~~~~~~l~~a~~~l 149 (315)
T 3bh0_A 104 -----LEMGKKENIKRLIVTAGSIN--AQKIKAAR--------RD-------------------FASEDWGKLSMAIGEI 149 (315)
T ss_dssp -----SSSCHHHHHHHHHHHHTTCC--HHHHHSCH--------HH-------------------HCSSCHHHHHHHHHHH
T ss_pred -----CCCCHHHHHHHHHHHHcCCC--HHHHhcCC--------CC-------------------CCHHHHHHHHHHHHHH
Confidence 234455543332221 211 11111111 12 8999999999999999
Q ss_pred cCCCEEEEeCcCcCC
Q 004826 631 KAPPILLCDEATSAL 645 (728)
Q Consensus 631 ~~p~ILILDEaTSaL 645 (728)
.++++++.|+|+..+
T Consensus 150 ~~~~i~i~d~~~~~~ 164 (315)
T 3bh0_A 150 SNSNINIFDKAGQSV 164 (315)
T ss_dssp HTSCEEEECCSCCBH
T ss_pred hCCCEEEECCCCCCH
Confidence 999999999987554
No 210
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.63 E-value=2e-05 Score=84.81 Aligned_cols=31 Identities=16% Similarity=0.466 Sum_probs=26.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHS 513 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~ 513 (728)
+++..+.|.||+|+|||||++.+++...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999998776543
No 211
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.63 E-value=0.00022 Score=72.10 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=24.2
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCCCCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p~~G 514 (728)
+|+|||++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999987766655
No 212
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.58 E-value=3.6e-05 Score=85.57 Aligned_cols=71 Identities=25% Similarity=0.383 Sum_probs=45.8
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCC------------CCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcc-cHHHH
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFD------------THSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFND-TIFHN 552 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~------------p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~g-TIreN 552 (728)
-++||||++|+|||||++.|+|... |.+|.+.++|.++.-++..-+|+..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 4799999999999999999999853 7889999999987666666667777777777666643 34456
Q ss_pred HHcC
Q 004826 553 IRYG 556 (728)
Q Consensus 553 I~~g 556 (728)
+..+
T Consensus 261 i~~a 264 (439)
T 1mky_A 261 IEKA 264 (439)
T ss_dssp HHHC
T ss_pred HhhC
Confidence 5543
No 213
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.57 E-value=3.8e-05 Score=91.81 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=29.2
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 479 sl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
+|.+++|+.+.|+||||||||||++.|++.+.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 34789999999999999999999999999874
No 214
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.55 E-value=3e-05 Score=78.52 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=73.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCC-cccHHHHHHcCCCCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLF-NDTIFHNIRYGRLSA 560 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF-~gTIreNI~~g~~~~ 560 (728)
+..|+.+.++|+|||||||++.+++.-.....|. ...+.++.|.|... .-++.+|+.-.....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4679999999999999999887664221111111 13467777777643 346677764221100
Q ss_pred CHHHHHHHHHHhccHHHHHhCCCcccchhhccccccchhHHHhhhhccCCCCCCCChhHHHHHHHHHHhccCCCEEEEeC
Q 004826 561 TEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGLKGRSLLYIQKKLERRPLFVSLSGGEKQRVALARAFLKAPPILLCDE 640 (728)
Q Consensus 561 sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~~~~~~~~~~~~~~~~~~~~~LSGGQrQRIaIARALl~~p~ILILDE 640 (728)
+ ...-|+.......... ..+...=-..|+-.+. .+..+++-+++|+||
T Consensus 137 -----------------~-~~~~g~~~~~~~~~~~------------~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDE 184 (235)
T 3llm_A 137 -----------------P-GKSCGYSVRFESILPR------------PHASIMFCTVGVLLRK--LEAGIRGISHVIVDE 184 (235)
T ss_dssp -----------------T-TSSEEEEETTEEECCC------------SSSEEEEEEHHHHHHH--HHHCCTTCCEEEECC
T ss_pred -----------------c-CceEEEeechhhccCC------------CCCeEEEECHHHHHHH--HHhhhcCCcEEEEEC
Confidence 0 0011221111110000 0000000244555554 344689999999999
Q ss_pred cCc-CCCHHHHHHHHHHHHHHcCCCeEEE
Q 004826 641 ATS-ALDSTTEAEILNALKSLANNRTSIF 668 (728)
Q Consensus 641 aTS-aLD~~tE~~I~~~L~~l~~~~TvIv 668 (728)
+-. ++|......+.+.+.....++.+|+
T Consensus 185 ah~~~~~~~~~~~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 185 IHERDINTDFLLVVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CccCCcchHHHHHHHHHHHhhCCCCeEEE
Confidence 976 5777766555555555444444443
No 215
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.54 E-value=5.6e-05 Score=79.73 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
++.+|||||++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999985
No 216
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.53 E-value=1.1e-05 Score=92.35 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=48.3
Q ss_pred EEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCC
Q 004826 462 DNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQD 541 (728)
Q Consensus 462 ~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd 541 (728)
++|...|. +..+++++++++ +|+.+.|+||+|+|||||++.|++...+..|.|.++|..-..--....++.+++++|.
T Consensus 87 ~~vk~~i~-~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~ 164 (543)
T 3m6a_A 87 EKVKERIL-EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGR 164 (543)
T ss_dssp HHHHHHHH-HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------C
T ss_pred HHHHHHHH-HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchH
Confidence 44444442 234678888888 8999999999999999999999999999999999888543222223344567776664
Q ss_pred C
Q 004826 542 T 542 (728)
Q Consensus 542 ~ 542 (728)
.
T Consensus 165 ~ 165 (543)
T 3m6a_A 165 I 165 (543)
T ss_dssp H
T ss_pred H
Confidence 3
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.52 E-value=9.8e-06 Score=80.64 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=38.3
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCC--EEEECCEe
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG--SIRIDGQD 522 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G--~I~idG~d 522 (728)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45788999999999999999999999999988889 88898643
No 218
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.51 E-value=3.2e-05 Score=73.82 Aligned_cols=33 Identities=33% Similarity=0.458 Sum_probs=28.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
.|+.++|+|++||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 56664
No 219
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.48 E-value=2.6e-05 Score=78.90 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=32.4
Q ss_pred eeeeeEEEe---CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 004826 475 LDGVSFVVP---AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (728)
Q Consensus 475 L~~isl~I~---~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (728)
|.++|++++ +|..++|.|++||||||++++|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 556666665 8999999999999999999999999987 6666543
No 220
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.46 E-value=1.6e-05 Score=78.68 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=44.1
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCC-CCCEE----------EECCEeCCCCCHHHHhcceEEEcCCCCCCcccH
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDT-HSGSI----------RIDGQDICEVTLESLRKSIGVVPQDTVLFNDTI 549 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p-~~G~I----------~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTI 549 (728)
...+|..++|+|+|||||||+++.|...++. ..+.+ .+||.+..-++.+.+...+ .|+.+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 3578999999999999999999999887742 11111 1356555556666665432 34555554444
Q ss_pred HHH
Q 004826 550 FHN 552 (728)
Q Consensus 550 reN 552 (728)
..|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 434
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.45 E-value=0.0003 Score=71.88 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=28.9
Q ss_pred eeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEe
Q 004826 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQD 522 (728)
Q Consensus 475 L~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~d 522 (728)
++++++..++| +.|+||+|+||||+++.|++.+... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 34444445554 9999999999999999999876422 35555543
No 222
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.43 E-value=1.4e-05 Score=85.88 Aligned_cols=54 Identities=20% Similarity=0.229 Sum_probs=46.9
Q ss_pred ceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCC
Q 004826 472 RKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICE 525 (728)
Q Consensus 472 ~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~ 525 (728)
..+++++++++++|.+++|+|++|+||||+++.|++.+.+..|+|.+-+.|...
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 357889999999999999999999999999999999998888888876666543
No 223
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.41 E-value=0.00013 Score=81.15 Aligned_cols=65 Identities=15% Similarity=0.280 Sum_probs=43.3
Q ss_pred CCCEEEEeCcCcCCCH-HHHHHHHHHHHHHc-CCCeEEEeccCc-hHHhh-cCeEEE-EeCCEEEEEcCh
Q 004826 632 APPILLCDEATSALDS-TTEAEILNALKSLA-NNRTSIFIAHRL-TTAMQ-CDEIIV-LENGKVIEQGSH 696 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~-~tE~~I~~~L~~l~-~~~TvIvIaHRL-sti~~-aD~IiV-ld~G~Ive~Gth 696 (728)
+|++|++||+..-.+. .+...++..+..+. .++++|+.||+. ..+.. .+++.- ++.|.+++.+.+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 8999999999987764 56777778877654 468888899984 22211 122222 456777666654
No 224
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.37 E-value=6.8e-06 Score=80.55 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=39.4
Q ss_pred EEEEECCCCccHHHHHHHHhc------CCCCCCCEEEECCE--eCCCCCH--------HHHhcceEEEcCCCCCCcccHH
Q 004826 487 SVAIVGTSGSGKSTILRLLFR------SFDTHSGSIRIDGQ--DICEVTL--------ESLRKSIGVVPQDTVLFNDTIF 550 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g------ly~p~~G~I~idG~--di~~i~~--------~~lR~~Ia~V~Qd~~LF~gTIr 550 (728)
.|+|+|++||||||++++|.. +.+|..|...++.. +-...+. ..+++....+.|+..+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 44554443222211 0000010 0023334556777788888888
Q ss_pred HHHHcC
Q 004826 551 HNIRYG 556 (728)
Q Consensus 551 eNI~~g 556 (728)
+|+.|.
T Consensus 82 ~~~~~~ 87 (205)
T 2jaq_A 82 EDPIFM 87 (205)
T ss_dssp THHHHH
T ss_pred hhHHHH
Confidence 887763
No 225
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.35 E-value=0.0006 Score=73.58 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=24.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+++|+.+.|.|++|||||||+.-++.-
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999999766643
No 226
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.33 E-value=0.00011 Score=71.54 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=27.4
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc----CCCCC----CCEEEECCE
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR----SFDTH----SGSIRIDGQ 521 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g----ly~p~----~G~I~idG~ 521 (728)
.+++++|++.++. +|+++|++|+|||||++.+.+ -|.|+ .+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4788999998877 899999999999999999987 33443 345555553
No 227
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.30 E-value=5.2e-05 Score=81.74 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=37.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i 526 (728)
+++.+|+|+|++|||||||++.|.|.+.|.+|+|.+.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 45789999999999999999999999999999999888766543
No 228
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.26 E-value=0.00015 Score=69.34 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++|.+|+|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 229
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.16 E-value=0.00028 Score=74.67 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~p 511 (728)
++..+.|.||+|+|||||++.+.+...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999986643
No 230
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.13 E-value=0.00058 Score=71.75 Aligned_cols=31 Identities=23% Similarity=0.420 Sum_probs=27.7
Q ss_pred eEEEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 479 SFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 479 sl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++.++++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3457889999999999999999999999865
No 231
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.10 E-value=0.0002 Score=69.48 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=26.8
Q ss_pred eeeEEEeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 477 GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 477 ~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999875
No 232
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.04 E-value=0.00017 Score=71.50 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=33.7
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHH
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA 676 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti 676 (728)
+|.+|++||+-. +|.+....+.+.+++...+..+|++|++...+
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 578999999876 78888888888887655567788888876543
No 233
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.04 E-value=0.00065 Score=75.73 Aligned_cols=58 Identities=9% Similarity=0.120 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHHHhccCCCEEEEeC-cCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHH
Q 004826 616 SGGEKQRVALARAFLKAPPILLCDE-ATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTA 676 (728)
Q Consensus 616 SGGQrQRIaIARALl~~p~ILILDE-aTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti 676 (728)
.+.|.+-...++..+++++++|+.. ++..+.... ..+.+.+++ .++.+|+|.+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 3458888899999999999877654 444455544 456666655 578899999887754
No 234
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.01 E-value=7.5e-05 Score=78.66 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=42.7
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCC
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEV 526 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i 526 (728)
++|+.+ |+.++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 677766 999999999999999999999999999999999988877653
No 235
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.01 E-value=0.00054 Score=70.87 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.8
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++++.-+.|.||+|+|||||++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999998754
No 236
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.98 E-value=0.00042 Score=67.85 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=23.0
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDT 511 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p 511 (728)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999876543
No 237
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.98 E-value=0.00083 Score=70.23 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=26.8
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCCE
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~ 515 (728)
...+.|+||+|+||||+++.|.+...+.+|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 3579999999999999999999988766664
No 238
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.94 E-value=0.0005 Score=68.51 Aligned_cols=27 Identities=11% Similarity=0.252 Sum_probs=24.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
++..+.|+||+|+||||+++.+.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987554
No 239
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.89 E-value=9.9e-05 Score=79.91 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=36.7
Q ss_pred CceEEEEEEEEEecCCceeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 456 GGSIQFDNVHFSYLTERKILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 456 ~g~I~f~nVsF~Y~~~~~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
.+.|.|+|++..|. .+.++++++|+| +|||++|+|||||++.|++...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~-~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH-RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH-THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC-CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46799999988875 456889999876 99999999999999999987666666554444
No 240
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.00028 Score=68.29 Aligned_cols=40 Identities=30% Similarity=0.427 Sum_probs=33.8
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEE-EECC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSI-RIDG 520 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I-~idG 520 (728)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 456899999999999999999999999888777765 4554
No 241
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.87 E-value=0.00099 Score=74.02 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=29.1
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 355555458999999999999999999998776544
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.87 E-value=0.00022 Score=73.02 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=34.4
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDIC 524 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~ 524 (728)
..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456778999999999999999999998775 367888885443
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.81 E-value=0.00025 Score=69.61 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=26.9
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
...|+|+|++||||||+++.|.+.+ |...+|+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 5556655
No 244
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.80 E-value=0.00066 Score=63.76 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=24.5
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHh-cCCC
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF-RSFD 510 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~-gly~ 510 (728)
..+++.+| ..+|+||+|||||||+..|. .+|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 44455555 89999999999999999886 3443
No 245
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.79 E-value=0.00095 Score=62.97 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.8
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-+++|+|++|+|||||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
No 246
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.76 E-value=0.0011 Score=71.06 Aligned_cols=39 Identities=28% Similarity=0.432 Sum_probs=30.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
..+|..+.|.||+|+||||+++.++........-+.+++
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 346778999999999999999999987754444455544
No 247
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.74 E-value=0.00063 Score=74.20 Aligned_cols=41 Identities=24% Similarity=0.402 Sum_probs=34.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcC-----------CCCCCCEEEECCE
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS-----------FDTHSGSIRIDGQ 521 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gl-----------y~p~~G~I~idG~ 521 (728)
.+..|.+++|||++|+|||||++.|.+. .+|+.|.|.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4678899999999999999999999998 6788899888763
No 248
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.73 E-value=0.00048 Score=73.01 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=24.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
-+++|+.+.|.|++|||||||+.-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999999977664
No 249
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.71 E-value=0.0007 Score=64.89 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+++|+|++|+|||||++.|++-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999984
No 250
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.69 E-value=2e-05 Score=85.46 Aligned_cols=85 Identities=14% Similarity=0.032 Sum_probs=62.4
Q ss_pred CChhHHHHHHHHHHhc-cCCCEEEEeC---cC------cCCCHHHHHHHHHHHHHHcC--CCeEEEeccCchHHhhcCeE
Q 004826 615 LSGGEKQRVALARAFL-KAPPILLCDE---AT------SALDSTTEAEILNALKSLAN--NRTSIFIAHRLTTAMQCDEI 682 (728)
Q Consensus 615 LSGGQrQRIaIARALl-~~p~ILILDE---aT------SaLD~~tE~~I~~~L~~l~~--~~TvIvIaHRLsti~~aD~I 682 (728)
+|+|++||..+++++. .+|++++||| |+ +++|......+.+.|+++.+ +.|+|+++|--..-+-+|++
T Consensus 259 ~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i 338 (365)
T 1lw7_A 259 IQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVK 338 (365)
T ss_dssp HHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHH
Confidence 6778889999999885 5999999999 54 68999999999999977655 89999999874445557777
Q ss_pred EEEeCCEEEEEcChHHHhh
Q 004826 683 IVLENGKVIEQGSHDDLLT 701 (728)
Q Consensus 683 iVld~G~Ive~Gth~eLl~ 701 (728)
.++++ +++.|+.+||.+
T Consensus 339 ~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 339 AVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHH--HTSCCCCSSCCC
T ss_pred HHHHH--HhcccchhHhhc
Confidence 76664 556666667654
No 251
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.69 E-value=0.0059 Score=56.56 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=25.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G 514 (728)
+.+.-|-|.||+|+|||++++.|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 45667999999999999999999886544333
No 252
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.68 E-value=0.0016 Score=66.39 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHHHhc---cCCCEEEEeCcCcCCCHHHHHHHHHHHHHHc----CCCeEEEeccCchH
Q 004826 616 SGGEKQRVALARAFL---KAPPILLCDEATSALDSTTEAEILNALKSLA----NNRTSIFIAHRLTT 675 (728)
Q Consensus 616 SGGQrQRIaIARALl---~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~----~~~TvIvIaHRLst 675 (728)
+.||+.+-.+.|+++ ++++++|+--..+.++. .+..+.+.+.+.. .++++|+++|....
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 344556667777774 88887765433345554 4455556665543 26799999997543
No 253
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.68 E-value=0.00054 Score=73.59 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=24.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
..+..+.|.||+|+||||+++.+.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999987653
No 254
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.67 E-value=0.00051 Score=66.44 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=30.1
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCC---CCEEEECCEe
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTH---SGSIRIDGQD 522 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~---~G~I~idG~d 522 (728)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3579999999999999999998876543 3778887754
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.60 E-value=0.00096 Score=64.16 Aligned_cols=26 Identities=38% Similarity=0.710 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDTH 512 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p~ 512 (728)
+|+|||++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 69999999999999999999975443
No 256
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.60 E-value=0.00095 Score=65.39 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++||||||+++.|.++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6999999999999999999993
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.54 E-value=0.0056 Score=66.17 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
-+++|+.+.|.|++|+|||||+.-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 379999999999999999999965543
No 258
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.52 E-value=0.002 Score=62.00 Aligned_cols=36 Identities=39% Similarity=0.584 Sum_probs=28.4
Q ss_pred EEEEECCCCccHHHHHH-HHhcC----CCCCCC----EEEECCEe
Q 004826 487 SVAIVGTSGSGKSTILR-LLFRS----FDTHSG----SIRIDGQD 522 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~-LL~gl----y~p~~G----~I~idG~d 522 (728)
+|+|||++|+|||||++ ++.+- |.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 69999999999999996 55554 678877 67777743
No 259
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.52 E-value=0.001 Score=72.55 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=40.9
Q ss_pred EEEEec-CCceeeeeeeEEEe---CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 004826 464 VHFSYL-TERKILDGVSFVVP---AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (728)
Q Consensus 464 VsF~Y~-~~~~vL~~isl~I~---~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (728)
+.+++. .+.|++-|+ +... .+..++|+|+|||||||+++.|+..+.+..+.|.+-
T Consensus 11 ~~~G~~~~g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 11 IVLGKDRDGGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp EEEEECTTSCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred cEEEEeCCCCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 345554 245666666 3322 677899999999999999999988777788888774
No 260
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.48 E-value=0.00031 Score=74.84 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=33.3
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchH
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTT 675 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLst 675 (728)
++.|+++|| .-.+++.....+.+.+++...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 5678888888888888876656667777776643
No 261
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.46 E-value=0.001 Score=72.18 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=45.6
Q ss_pred HHHHHHHhccCCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCchHHhhcCeEEEE
Q 004826 622 RVALARAFLKAPPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLTTAMQCDEIIVL 685 (728)
Q Consensus 622 RIaIARALl~~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLsti~~aD~IiVl 685 (728)
+.+|+++|..+|+++++|||| |.++ +..+++....|.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~---~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLET---VETALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHH---HHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHH---HHHHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 579999999999999999999 7665 334455555689999999998876667776433
No 262
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.46 E-value=0.0012 Score=63.55 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=23.4
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.+|..++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.43 E-value=0.0016 Score=62.23 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.|..|.|+|+|||||||+.+.|..-+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999988654
No 264
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.39 E-value=0.0021 Score=64.57 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=34.9
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccC-----------chHHhhcCeEEEEe
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHR-----------LTTAMQCDEIIVLE 686 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHR-----------Lsti~~aD~IiVld 686 (728)
+++++++||+-- |+.+.-+ ....|.+ .+.++|++-|+ ...+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve-~l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICE-VANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHH-HHHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHH-HHHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999974 6654222 2233444 48899999993 23467799998754
No 265
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.39 E-value=0.00043 Score=68.24 Aligned_cols=89 Identities=24% Similarity=0.257 Sum_probs=55.0
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCC---CCCcccHHHHHH--cC-CC-C
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDT---VLFNDTIFHNIR--YG-RL-S 559 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~---~LF~gTIreNI~--~g-~~-~ 559 (728)
.|+|+|++||||||++++|.+.+++...++. ++..+. .++..++++.+. ++ .+ +
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~-------------------~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 62 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA-------------------TLAFPRYGQSVAADIAAEALHGEHGDLASS 62 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE-------------------EEESSEEEEEEEEEEHHHHEEEEEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE-------------------EEeecCCCCcchhhHHHHHHcccccccCCC
Confidence 6899999999999999999998864322222 111111 112445665542 11 11 2
Q ss_pred CCHHHHHHHHHHhccHHHHHhCCCcccchhhcccc
Q 004826 560 ATEEEVYDAARRAAIHDTIMNFPAKYSTVVGERGL 594 (728)
Q Consensus 560 ~sdeei~~A~~~a~l~~~I~~LP~G~dT~vgE~G~ 594 (728)
...+.+..++..+...+.|..++.+.++.|.+++.
T Consensus 63 ~~~~~~~~~~~r~~~~~~i~~~l~~g~~vi~D~~~ 97 (214)
T 1gtv_A 63 VYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYV 97 (214)
T ss_dssp HHHHHHHHHHHHHEEHHHHHHEEEEEEEEEEEEEE
T ss_pred HhHHHHHHHHHHhhhHHHHHHHhhCCCEEEECCCc
Confidence 22334445555555577888887778899998875
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.36 E-value=0.0081 Score=66.37 Aligned_cols=35 Identities=29% Similarity=0.429 Sum_probs=27.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEE
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRI 518 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~i 518 (728)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46789999999999999999888877654444544
No 267
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.35 E-value=0.0085 Score=60.66 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=22.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++..-+.|.||+|+||||+++.++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445668999999999999999998744
No 268
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.33 E-value=0.00048 Score=73.87 Aligned_cols=37 Identities=32% Similarity=0.421 Sum_probs=33.4
Q ss_pred eeeeeeeEEEeCCcE--EEEECCCCccHHHHHHHHhcCC
Q 004826 473 KILDGVSFVVPAGKS--VAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~--vAIVG~SGSGKSTL~~LL~gly 509 (728)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 578889999999999 9999999999999999988753
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.29 E-value=0.0019 Score=61.02 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly 509 (728)
..|+|+|++||||||+++.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 270
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.28 E-value=0.0039 Score=65.94 Aligned_cols=28 Identities=25% Similarity=0.216 Sum_probs=25.1
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
--+++|..+.|.||+|+|||||+.-++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999999988874
No 271
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.27 E-value=0.0019 Score=67.59 Aligned_cols=27 Identities=33% Similarity=0.447 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++...+.|.||+|+|||+|++.++.-.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568889999999999999999765
No 272
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.25 E-value=0.0021 Score=61.74 Aligned_cols=26 Identities=27% Similarity=0.472 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|..+.|+|++||||||+++.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 273
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.23 E-value=0.0023 Score=62.34 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|..|+|+|++||||||+++.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999877
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.20 E-value=0.0023 Score=61.49 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999997654
No 275
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.20 E-value=0.002 Score=61.83 Aligned_cols=30 Identities=23% Similarity=0.469 Sum_probs=25.1
Q ss_pred CcEEEEECCCCccHHHHHHHHhcC----CCCCCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRS----FDTHSG 514 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gl----y~p~~G 514 (728)
.-+++|||++|+|||||++.+.+- |.|+.|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 347999999999999999999876 356666
No 276
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.20 E-value=0.0092 Score=58.02 Aligned_cols=42 Identities=19% Similarity=0.281 Sum_probs=30.4
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs 674 (728)
++.++++||+- .++......+.+.+++...+..+|+++.+..
T Consensus 102 ~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 58899999975 4677777777777877555566666676654
No 277
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.19 E-value=0.03 Score=58.19 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999998887655
No 278
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.18 E-value=0.0053 Score=66.02 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++...+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999998754
No 279
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.16 E-value=0.00071 Score=80.80 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=29.8
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.++.+++|+.+.++||+|+|||||++.|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 467789999999999999999999999998763
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.14 E-value=0.0029 Score=62.69 Aligned_cols=32 Identities=38% Similarity=0.387 Sum_probs=26.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
.+..|+|+|++||||||+++.|..+ |...+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3568999999999999999999983 5555654
No 281
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.12 E-value=0.0029 Score=68.41 Aligned_cols=59 Identities=29% Similarity=0.341 Sum_probs=42.9
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCCCHHHHH
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSATEEEVY 566 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~sdeei~ 566 (728)
+++|||++|+|||||++.|.+.. + ++.+++.. |+..|+.+. ..+++++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~--~v~~~~l~ 51 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV--PLEDERLY 51 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE--ECCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE--ecChHHHH
Confidence 58999999999999999999874 3 22233222 666666554 35677888
Q ss_pred HHHHHhccHH
Q 004826 567 DAARRAAIHD 576 (728)
Q Consensus 567 ~A~~~a~l~~ 576 (728)
.+++.++.++
T Consensus 52 ~~~~~~~~~~ 61 (368)
T 2dby_A 52 ALQRTFAKGE 61 (368)
T ss_dssp HHHHHHCBTT
T ss_pred HHHHHhcccc
Confidence 8888888765
No 282
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.11 E-value=0.0021 Score=67.88 Aligned_cols=34 Identities=41% Similarity=0.461 Sum_probs=30.2
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
..+++..+.+ .|+-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4688888887 899999999999999999988876
No 283
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.11 E-value=2.3 Score=48.39 Aligned_cols=12 Identities=33% Similarity=0.321 Sum_probs=7.2
Q ss_pred eeeeeeEEEeCC
Q 004826 474 ILDGVSFVVPAG 485 (728)
Q Consensus 474 vL~~isl~I~~G 485 (728)
-++|++|+-+.+
T Consensus 341 ~~~~v~~~y~~~ 352 (578)
T 4a82_A 341 DIDHVSFQYNDN 352 (578)
T ss_dssp EEEEEEECSCSS
T ss_pred EEEEEEEEcCCC
Confidence 466777766543
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.09 E-value=0.0024 Score=61.54 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=23.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++|..|.|+|++||||||+++.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999997644
No 285
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.07 E-value=0.012 Score=74.73 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=28.1
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCE
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~ 515 (728)
+++|+.|.|.|++|+|||||+.-++.......|.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~ 762 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKT 762 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999998887655433333
No 286
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.07 E-value=0.0028 Score=66.13 Aligned_cols=36 Identities=25% Similarity=0.431 Sum_probs=29.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
++|..+.|+|+|||||||+++.|+.-++ .|.+.|++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987553 46677776
No 287
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.06 E-value=0.0028 Score=63.86 Aligned_cols=28 Identities=29% Similarity=0.384 Sum_probs=23.9
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+-++|.+++|+|++||||||+.+.|.+.
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3567899999999999999999999863
No 288
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.05 E-value=0.0033 Score=62.08 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.5
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHh
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~ 506 (728)
.++++.+ ...+|+||+||||||++..|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 4455555 489999999999999999774
No 289
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.04 E-value=0.0029 Score=59.52 Aligned_cols=20 Identities=50% Similarity=0.762 Sum_probs=18.6
Q ss_pred cEEEEECCCCccHHHHHHHH
Q 004826 486 KSVAIVGTSGSGKSTILRLL 505 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL 505 (728)
..++|+|++||||||+++.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 290
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.00 E-value=0.0048 Score=66.54 Aligned_cols=36 Identities=28% Similarity=0.529 Sum_probs=31.5
Q ss_pred CcEEEEECCCCccHHHHHHHHhc-----------CCCCCCCEEEECC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFR-----------SFDTHSGSIRIDG 520 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~g-----------ly~p~~G~I~idG 520 (728)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4578889888876
No 291
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.95 E-value=0.0032 Score=60.84 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+++..|+|+|++||||||+++.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998654
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.93 E-value=0.0035 Score=61.51 Aligned_cols=27 Identities=37% Similarity=0.459 Sum_probs=24.1
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++|..|+|.|++||||||+++.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998643
No 293
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.91 E-value=0.0038 Score=61.02 Aligned_cols=28 Identities=36% Similarity=0.430 Sum_probs=24.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~p 511 (728)
+|..|+|.|++||||||+++.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999886653
No 294
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.90 E-value=0.0029 Score=61.73 Aligned_cols=74 Identities=28% Similarity=0.520 Sum_probs=52.6
Q ss_pred EEEECCCCccHHHHHHHHhcCC-------------CCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHH
Q 004826 488 VAIVGTSGSGKSTILRLLFRSF-------------DTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIR 554 (728)
Q Consensus 488 vAIVG~SGSGKSTL~~LL~gly-------------~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~ 554 (728)
|.|+||||||||||++-|+.-+ +|-.|+ .||+|..=++.+...+.+ .++-+|-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-e
Confidence 7899999999999998876433 355676 589888888888887764 36667767666655 4
Q ss_pred cCCCCCCHHHHHHHHH
Q 004826 555 YGRLSATEEEVYDAAR 570 (728)
Q Consensus 555 ~g~~~~sdeei~~A~~ 570 (728)
||- +.+++.++++
T Consensus 78 YGt---~~~~v~~~l~ 90 (186)
T 1ex7_A 78 YGS---TVASVKQVSK 90 (186)
T ss_dssp EEE---EHHHHHHHHH
T ss_pred eee---ecceeeehhh
Confidence 663 3455555443
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.90 E-value=0.0036 Score=59.99 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++..|.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998544
No 296
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.88 E-value=0.0048 Score=68.49 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=25.8
Q ss_pred eeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 475 LDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 475 L~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
|+.+.--++||+.+.|.|++|+||||++--++.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 333332489999999999999999999865553
No 297
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.88 E-value=0.0038 Score=61.31 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.2
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++|..|+|+|++||||||+++.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998644
No 298
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.79 E-value=0.02 Score=61.41 Aligned_cols=28 Identities=18% Similarity=0.315 Sum_probs=23.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++..-+.|.||+|+|||||++.++...
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3556679999999999999999999754
No 299
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.77 E-value=0.019 Score=60.77 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.+|..-+.|.||+|+|||||++.+++..
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3566789999999999999999999865
No 300
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.75 E-value=0.004 Score=59.42 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998754
No 301
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.69 E-value=0.0038 Score=60.46 Aligned_cols=28 Identities=32% Similarity=0.475 Sum_probs=24.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++++..|+|+|++||||||+++.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999998755
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.68 E-value=0.0051 Score=58.44 Aligned_cols=31 Identities=35% Similarity=0.519 Sum_probs=24.3
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (728)
..+.|+|++||||||+++.|... ..|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999872 23555554
No 303
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.68 E-value=0.0053 Score=59.04 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.1
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++..|+|+|++||||||+.+.|..-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999997643
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.64 E-value=0.0041 Score=59.45 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=18.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++..|.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998544
No 305
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.63 E-value=0.0087 Score=56.33 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++-+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988764
No 306
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.62 E-value=0.005 Score=62.96 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=21.2
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+.++|+|++|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 307
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.59 E-value=0.0032 Score=60.47 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=26.7
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCCC---CEEEECCE
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTHS---GSIRIDGQ 521 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~~---G~I~idG~ 521 (728)
..++|+|+||||||||+.-|++.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 4799999999999999998888765332 45555543
No 308
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.58 E-value=4.4 Score=46.22 Aligned_cols=14 Identities=21% Similarity=0.221 Sum_probs=10.4
Q ss_pred eEEEEEEEEEecCC
Q 004826 458 SIQFDNVHFSYLTE 471 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~ 471 (728)
.-.++||+|.-+++
T Consensus 356 ~~~l~~isl~i~~G 369 (587)
T 3qf4_A 356 DPVLSGVNFSVKPG 369 (587)
T ss_dssp CCSEEEEEEEECTT
T ss_pred CcceeceEEEEcCC
Confidence 34689999988643
No 309
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.57 E-value=0.003 Score=64.59 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=23.2
Q ss_pred eeEEEeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 478 VSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 478 isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+.+..++| +.|.||+|+||||+++.+++.
T Consensus 39 ~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 39 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred CCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 33444445 889999999999999999874
No 310
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.56 E-value=0.0065 Score=60.26 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++|..|.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.53 E-value=0.0057 Score=58.68 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.6
Q ss_pred EEEEECCCCccHHHHHHHHhcCCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.|.|.|++||||||+++.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
No 312
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.011 Score=54.89 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999999987
No 313
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.51 E-value=0.015 Score=54.60 Aligned_cols=25 Identities=28% Similarity=0.398 Sum_probs=22.1
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhc
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
++.-+|+++|++|+|||||++-+.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3556899999999999999999876
No 314
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.41 E-value=0.005 Score=59.84 Aligned_cols=22 Identities=41% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|||++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999753
No 315
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.41 E-value=0.0081 Score=58.59 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.+..|.|+|++||||||+++.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998654
No 316
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.36 E-value=0.0074 Score=59.47 Aligned_cols=23 Identities=22% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+++|.|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996544
No 317
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.34 E-value=0.0077 Score=58.15 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.|+|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 318
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.0065 Score=65.24 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++..+.|.||+|+||||+++.++...
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
No 319
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.32 E-value=0.0072 Score=57.96 Aligned_cols=25 Identities=44% Similarity=0.600 Sum_probs=21.6
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+..|+|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3469999999999999999997644
No 320
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.31 E-value=5.4 Score=45.56 Aligned_cols=10 Identities=10% Similarity=0.335 Sum_probs=5.7
Q ss_pred EEEEEEEEec
Q 004826 460 QFDNVHFSYL 469 (728)
Q Consensus 460 ~f~nVsF~Y~ 469 (728)
.++||+|.-+
T Consensus 370 ~l~~isl~i~ 379 (598)
T 3qf4_B 370 VLKDITFHIK 379 (598)
T ss_dssp SCCSEEEECC
T ss_pred cccceEEEEc
Confidence 3566666554
No 321
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.31 E-value=0.0078 Score=60.04 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++..+.|+|++||||||+++.|..-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 322
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.31 E-value=0.0087 Score=56.53 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.1
Q ss_pred CcEEEEECCCCccHHHHHHHHhcC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+.++|.|+.||||||+.+.|...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
No 323
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.26 E-value=0.013 Score=57.21 Aligned_cols=21 Identities=24% Similarity=0.670 Sum_probs=18.9
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++-+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999997764
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.26 E-value=0.008 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.1
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly 509 (728)
..|.|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998643
No 325
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.24 E-value=0.0091 Score=56.17 Aligned_cols=23 Identities=43% Similarity=0.535 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|+|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998743
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.23 E-value=0.013 Score=54.52 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.4
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|+++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999887653
No 327
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.23 E-value=0.0083 Score=58.48 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
No 328
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.23 E-value=0.0089 Score=58.29 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
....|+|.|++||||||+++.|..-+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34579999999999999999998654
No 329
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.21 E-value=0.0088 Score=58.99 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+++|+|++||||||+++.|+.-|
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 330
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.18 E-value=0.019 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=21.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhc
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
++.=+|+++|++|+|||||++-+.+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 4556899999999999999999986
No 331
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.18 E-value=0.008 Score=59.71 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.+..|.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999987553
No 332
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.17 E-value=0.0092 Score=55.42 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999998763
No 333
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.16 E-value=0.0095 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
..|+|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 46999999999999999999875
No 334
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.14 E-value=0.0097 Score=57.16 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=20.9
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.++|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 335
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.13 E-value=0.01 Score=60.19 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++-.+.|.|++||||||+++.|..-|
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999997654
No 336
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.13 E-value=0.014 Score=54.12 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 337
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.11 E-value=0.0088 Score=55.60 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|+++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998744
No 338
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.11 E-value=0.0095 Score=57.10 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+..|+|+|++||||||+++.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998644
No 339
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.11 E-value=0.013 Score=56.04 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.8
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
=+|+|+|++|+|||||++.|++-
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 340
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.09 E-value=0.046 Score=60.54 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
..|..-+.|.||+|+|||||++.+++..
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 3566789999999999999999999865
No 341
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.07 E-value=0.014 Score=56.05 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.|.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999998887
No 342
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.06 E-value=0.022 Score=52.99 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=20.4
Q ss_pred CcEEEEECCCCccHHHHHHHHhc
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
.-+|+++|++|+|||||++-+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999998865
No 343
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.05 E-value=0.011 Score=55.27 Aligned_cols=23 Identities=26% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|+|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 69999999999999999998643
No 344
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.03 E-value=0.068 Score=58.62 Aligned_cols=35 Identities=31% Similarity=0.489 Sum_probs=27.3
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDG 520 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG 520 (728)
=++.+.|.|+|++||||||+++.|+.-+ |-+.+|.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 4567899999999999999999987643 4455543
No 345
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.03 E-value=0.011 Score=54.64 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++-+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988874
No 346
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.01 E-value=0.012 Score=54.92 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|+|+|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 68999999999999999997643
No 347
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.011 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+.-+|+++|++|+|||||++.|.+-.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33489999999999999999998754
No 348
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.97 E-value=0.018 Score=55.90 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++-|.+
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999875
No 349
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.95 E-value=0.012 Score=54.32 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+++++|++|+|||||++-+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998643
No 350
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.95 E-value=0.011 Score=60.00 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.3
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999997744
No 351
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.95 E-value=0.012 Score=54.52 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++-+.+
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 352
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.95 E-value=0.006 Score=63.74 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++-.|+|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 353
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.93 E-value=0.011 Score=54.51 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++-+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998754
No 354
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.89 E-value=0.013 Score=56.07 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.4
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDT 511 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p 511 (728)
+|+|||++|+|||||++.+.+-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987653
No 355
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.89 E-value=0.012 Score=54.48 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 356
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.88 E-value=0.013 Score=54.65 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++-+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999988754
No 357
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=94.86 E-value=0.011 Score=60.97 Aligned_cols=22 Identities=45% Similarity=0.771 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|||++|+|||||++.|++-
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999988764
No 358
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.86 E-value=0.015 Score=55.54 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988764
No 359
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.85 E-value=0.012 Score=54.83 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999998763
No 360
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.85 E-value=0.012 Score=60.56 Aligned_cols=24 Identities=38% Similarity=0.497 Sum_probs=22.0
Q ss_pred EEEEECCCCccHHHHHHHHhcCCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
+|+|+|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 799999999999999999998753
No 361
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.84 E-value=0.013 Score=55.16 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++-+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999888753
No 362
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.83 E-value=0.013 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999888753
No 363
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.81 E-value=0.015 Score=61.78 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=24.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+++..+.|+||||||||||...|+.-+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence 356789999999999999999999866
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.81 E-value=0.013 Score=54.98 Aligned_cols=22 Identities=27% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++-+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998753
No 365
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.78 E-value=0.014 Score=54.96 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.|.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999763
No 366
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.76 E-value=0.015 Score=59.56 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=22.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
.++..|.|+|++||||||+++.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999864
No 367
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.75 E-value=0.013 Score=60.09 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|++||.+|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999864
No 368
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.74 E-value=0.013 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.3
Q ss_pred CcEEEEECCCCccHHHHHHHHhcC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
--+|+|+|++|+|||||++.|.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999864
No 369
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.72 E-value=0.013 Score=60.78 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.8
Q ss_pred CcEEEEECCCCccHHHHHHHHhc
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
...|+|+|++||||||+++.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999985
No 370
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.68 E-value=0.014 Score=57.78 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|..|.|+|++||||||+++.|..-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 371
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.66 E-value=0.014 Score=55.79 Aligned_cols=24 Identities=46% Similarity=0.618 Sum_probs=21.3
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-+|+|+|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998753
No 372
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.65 E-value=0.015 Score=55.10 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++.|.+
T Consensus 6 ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999999875
No 373
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.63 E-value=0.021 Score=56.07 Aligned_cols=35 Identities=34% Similarity=0.440 Sum_probs=27.7
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
..++..-+.+ .|..+.|+||||||||||+.-|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3566655554 6889999999999999999887654
No 374
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.62 E-value=0.052 Score=64.25 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=21.0
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.+.++||+|+|||++++.|....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 375
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.59 E-value=0.027 Score=53.24 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=23.3
Q ss_pred EEEEECCCCccHHHHHHHHhc-----CCCCCCCE
Q 004826 487 SVAIVGTSGSGKSTILRLLFR-----SFDTHSGS 515 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g-----ly~p~~G~ 515 (728)
+|+|+|++|+|||||++-+.+ -|+|+.|.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 41 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIEN 41 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCE
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccc
Confidence 699999999999999998872 34566553
No 376
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=94.59 E-value=0.027 Score=59.39 Aligned_cols=26 Identities=19% Similarity=0.394 Sum_probs=22.9
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
.|..-+-|.||+|+|||+|++.++..
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667999999999999999999875
No 377
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.59 E-value=0.016 Score=55.13 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999885
No 378
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.56 E-value=0.023 Score=54.52 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=23.8
Q ss_pred cEEEEECCCCccHHHHHHHHhc------CCCCCCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFR------SFDTHSG 514 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~g------ly~p~~G 514 (728)
-+|+|+|.+|+|||||++-+.+ -|.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 4689999999999999999986 3455555
No 379
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.55 E-value=0.03 Score=52.94 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 380
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.54 E-value=0.018 Score=54.04 Aligned_cols=21 Identities=19% Similarity=0.504 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 8 ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 381
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.53 E-value=0.017 Score=53.48 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=19.2
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+++++|++|+|||||++-+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998864
No 382
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.52 E-value=0.016 Score=55.21 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 6899999999999999998874
No 383
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.49 E-value=0.024 Score=54.53 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 25 ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 689999999999999998875
No 384
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.47 E-value=0.058 Score=57.39 Aligned_cols=42 Identities=14% Similarity=0.164 Sum_probs=31.1
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs 674 (728)
++.++|+||+- .++......+.+.+++...+..+|+++++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 57899999975 4677777788888876555566677777654
No 385
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.47 E-value=0.018 Score=54.27 Aligned_cols=21 Identities=38% Similarity=0.559 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++.+.+
T Consensus 12 ~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999998875
No 386
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.45 E-value=0.027 Score=53.98 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=20.1
Q ss_pred cEEEEECCCCccHHHHHHHHhc
Q 004826 486 KSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~g 507 (728)
=+|+|||++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3799999999999999999976
No 387
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.45 E-value=0.016 Score=54.26 Aligned_cols=21 Identities=14% Similarity=0.457 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++-+++
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999998874
No 388
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.44 E-value=0.019 Score=59.42 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.7
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-+|+|||++|+|||||++.|.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999854
No 389
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.39 E-value=0.094 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+...+.|.||+|+||||+++.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4467999999999999999999774
No 390
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.39 E-value=0.019 Score=54.06 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++-+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999988764
No 391
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.38 E-value=0.019 Score=53.81 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++-+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999998763
No 392
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.38 E-value=0.018 Score=56.84 Aligned_cols=23 Identities=17% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+++|.|++||||||+++.|..-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 393
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.38 E-value=0.015 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.4
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998865
No 394
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.36 E-value=0.02 Score=57.51 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=19.1
Q ss_pred CCcE-EEEECCCCccHHHH-HHHHhcCC
Q 004826 484 AGKS-VAIVGTSGSGKSTI-LRLLFRSF 509 (728)
Q Consensus 484 ~Ge~-vAIVG~SGSGKSTL-~~LL~gly 509 (728)
.|+. +-+.|+.|+||||+ +++-..+.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 4554 78899999999999 45544443
No 395
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.35 E-value=0.064 Score=59.13 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=25.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-++|-.-+-+.||+|+|||+|++.+++-.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 46777889999999999999999999754
No 396
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.32 E-value=0.02 Score=54.69 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++-|++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999988753
No 397
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.30 E-value=0.02 Score=54.06 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++-+.+
T Consensus 20 ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 699999999999999998875
No 398
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.28 E-value=0.014 Score=57.39 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=21.9
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.-+|+|+|++|+|||||++.|++-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998753
No 399
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.26 E-value=0.028 Score=55.05 Aligned_cols=22 Identities=27% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999864
No 400
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.25 E-value=0.02 Score=58.19 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.8
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+|+|||++|+|||||++.|++-
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999874
No 401
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.24 E-value=0.022 Score=56.73 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.+.|.|++||||||+++.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997654
No 402
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.23 E-value=0.029 Score=53.73 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999875
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.22 E-value=0.025 Score=56.70 Aligned_cols=26 Identities=31% Similarity=0.549 Sum_probs=22.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.+..|.|+|++||||||+++.|..-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998755
No 404
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.22 E-value=0.13 Score=66.29 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=24.5
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+++|+.+.|.||+|+|||||+.-++.-.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~ 407 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAA 407 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999987665433
No 405
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.22 E-value=0.021 Score=59.84 Aligned_cols=22 Identities=50% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|||++|+|||||++.|+|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
No 406
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=94.19 E-value=0.036 Score=62.16 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=24.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+++..-+.|.||+|+|||++++.++...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998754
No 407
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.19 E-value=0.022 Score=55.11 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999988764
No 408
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.16 E-value=0.022 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 409
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.15 E-value=0.021 Score=54.20 Aligned_cols=22 Identities=27% Similarity=0.641 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999988753
No 410
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.14 E-value=0.022 Score=54.92 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++-+.+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
No 411
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.13 E-value=0.026 Score=59.38 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.2
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+..++|+||||||||||..-|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 412
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.13 E-value=0.029 Score=60.59 Aligned_cols=30 Identities=37% Similarity=0.540 Sum_probs=24.7
Q ss_pred eeeeEEEeCCcEEEEECCCCccHHHHHHHHh
Q 004826 476 DGVSFVVPAGKSVAIVGTSGSGKSTILRLLF 506 (728)
Q Consensus 476 ~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~ 506 (728)
++..+++.+ ...+|+|+||||||||+..|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 556667666 489999999999999998775
No 413
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.09 E-value=0.015 Score=54.93 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCccHHHHHHHHhc
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
+.-+|+++|++|+|||||++-+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999998763
No 414
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.08 E-value=0.036 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.1
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999988763
No 415
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.06 E-value=0.024 Score=54.15 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++-+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 416
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.05 E-value=0.094 Score=66.66 Aligned_cols=26 Identities=35% Similarity=0.586 Sum_probs=23.4
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
+++|+.+-|.|++|+|||||+.-++.
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~ 405 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIA 405 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999866543
No 417
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.04 E-value=0.026 Score=54.55 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
No 418
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.01 E-value=0.024 Score=60.37 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.1
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
..|+|+||||||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999987664
No 419
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.01 E-value=0.025 Score=54.70 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=19.8
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|||.+|+|||||++.+.+
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999999986
No 420
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.00 E-value=0.025 Score=55.48 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.0
Q ss_pred cEEEEECCCCccHHHHHHHHhcCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-+++++|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 379999999999999999888743
No 421
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.00 E-value=0.039 Score=57.86 Aligned_cols=43 Identities=12% Similarity=0.239 Sum_probs=31.9
Q ss_pred CCCEEEEeCcCcCCC-HHHHHHHHHHHHHHcCCCeEEEeccCchH
Q 004826 632 APPILLCDEATSALD-STTEAEILNALKSLANNRTSIFIAHRLTT 675 (728)
Q Consensus 632 ~p~ILILDEaTSaLD-~~tE~~I~~~L~~l~~~~TvIvIaHRLst 675 (728)
+++++++||+-. +. .+....+.+.+++...+..+|+++.+...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 689999999854 34 56666777777776667788888888654
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.98 E-value=0.026 Score=53.37 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.1
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++-+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 699999999999999988864
No 423
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.97 E-value=0.025 Score=54.40 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.6
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.|.+
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999976
No 424
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.97 E-value=0.022 Score=57.26 Aligned_cols=29 Identities=28% Similarity=0.521 Sum_probs=22.2
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
..+|..|.|-|++||||||++++|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987664
No 425
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.96 E-value=0.021 Score=58.32 Aligned_cols=29 Identities=28% Similarity=0.353 Sum_probs=24.7
Q ss_pred EeCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.+++..|+|.|..||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36788999999999999999999988763
No 426
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.96 E-value=0.028 Score=55.83 Aligned_cols=28 Identities=32% Similarity=0.384 Sum_probs=24.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.+|..|+|-|++||||||++++|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999987665
No 427
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.96 E-value=0.026 Score=56.04 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.7
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+|+|||++|+|||||++.+++-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999863
No 428
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.94 E-value=0.026 Score=59.30 Aligned_cols=22 Identities=50% Similarity=0.650 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|||||++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 7999999999999999999874
No 429
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.93 E-value=0.028 Score=54.28 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=21.9
Q ss_pred EEEEECCCCccHHHHHHHHhcCCCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSFDT 511 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly~p 511 (728)
+|++||.+|+|||||++.+.+-+.+
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7999999999999999998885543
No 430
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.92 E-value=0.024 Score=54.93 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
=+|+|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 47999999999999999998864
No 431
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.91 E-value=0.075 Score=55.66 Aligned_cols=28 Identities=36% Similarity=0.541 Sum_probs=24.3
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
+.+..+-|.|++|+|||++++.|....+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 5567899999999999999999988654
No 432
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.89 E-value=0.034 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.|.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999998863
No 433
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.85 E-value=0.032 Score=52.60 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.8
Q ss_pred CCcEEEEECCCCccHHHHHHHHhc
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
+-=+|+++|++|+|||||++.+.+
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999998875
No 434
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.85 E-value=0.028 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999988753
No 435
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.025 Score=54.18 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 6899999999999999988863
No 436
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.77 E-value=0.069 Score=58.75 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=25.2
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-++|..-+-+.||+|+|||+|++.+++-.
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46677779999999999999999999753
No 437
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.77 E-value=0.033 Score=52.59 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=23.2
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
..+..+.|+|++|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 446779999999999999999888764
No 438
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.75 E-value=0.026 Score=53.13 Aligned_cols=22 Identities=23% Similarity=0.533 Sum_probs=19.8
Q ss_pred cEEEEECCCCccHHHHHHHHhc
Q 004826 486 KSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~g 507 (728)
=+|+++|++|+|||||++-+.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999998875
No 439
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.75 E-value=0.031 Score=56.52 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=24.6
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.+|..|+|.|++||||||+++.|...+.
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999987664
No 440
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.75 E-value=0.029 Score=54.41 Aligned_cols=21 Identities=29% Similarity=0.686 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 699999999999999999875
No 441
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.74 E-value=0.059 Score=60.58 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=23.5
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
-+++|+.+.|.|++|+|||||+.-++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 489999999999999999999865543
No 442
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.74 E-value=0.027 Score=54.84 Aligned_cols=23 Identities=26% Similarity=0.561 Sum_probs=20.7
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+|+++|++|+|||||++.+.+-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998863
No 443
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.72 E-value=0.033 Score=55.79 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=24.8
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
.+|..|+|.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987654
No 444
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.72 E-value=0.028 Score=56.08 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=26.0
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFDT 511 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~p 511 (728)
++|..|.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46999999999999999999999887764
No 445
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.71 E-value=0.03 Score=53.41 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=20.5
Q ss_pred CcEEEEECCCCccHHHHHHHHhc
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
.=+|+++|++|+|||||++-+.+
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 44799999999999999999884
No 446
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.70 E-value=0.031 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.|.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 7999999999999999988753
No 447
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.70 E-value=0.03 Score=54.37 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred CcEEEEECCCCccHHHHHHHHhc
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
.=+|+|+|++|+|||||++.+.+
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999998875
No 448
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.70 E-value=0.031 Score=53.79 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
=+|+|+|++|+|||||++-+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999988753
No 449
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.69 E-value=0.029 Score=57.85 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|+++|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999854
No 450
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.66 E-value=0.025 Score=54.16 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=20.5
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
=+|+++|++|+|||||++-+.+-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999998764
No 451
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.65 E-value=0.032 Score=53.95 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=21.0
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+.=+|+|+|++|+|||||++-+.+-
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3457999999999999999988753
No 452
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.64 E-value=0.027 Score=53.47 Aligned_cols=21 Identities=43% Similarity=0.529 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++-+.+
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999986
No 453
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.64 E-value=0.031 Score=57.96 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=24.2
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCCCCEEEEC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRID 519 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~id 519 (728)
..+.|+|++||||||+.+.|..-+ .|-..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~ 33 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEec
Confidence 468999999999999999998632 2555554
No 454
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.63 E-value=0.058 Score=56.14 Aligned_cols=42 Identities=19% Similarity=0.270 Sum_probs=29.1
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs 674 (728)
++.++++||+- .++.+....+.+.+++...+..+|+++.+.+
T Consensus 110 ~~~vliiDe~~-~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 110 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CCeEEEEeCCC-cCCHHHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 57899999974 4567777777777776545555666665543
No 455
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.63 E-value=0.034 Score=55.26 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
+|..|.+.|++||||||++++|...++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987664
No 456
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.62 E-value=0.045 Score=52.51 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=26.3
Q ss_pred eeeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhc
Q 004826 473 KILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 473 ~vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
..++..-+. -.|.-+.|.|+||+||||++..|..
T Consensus 5 ~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLV-IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 445554444 4689999999999999999987664
No 457
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.62 E-value=0.032 Score=56.05 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=23.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
+|..|+|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999988663
No 458
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.59 E-value=0.03 Score=55.04 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.3
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-.++|+|++|+|||||++-|++-
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36999999999999999888764
No 459
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.58 E-value=0.036 Score=54.23 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.|.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999998864
No 460
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.57 E-value=0.032 Score=57.04 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|++||.+|+|||||++.|++-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999973
No 461
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.57 E-value=0.031 Score=57.32 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.7
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|++||++|+|||||++.|++--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
No 462
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.54 E-value=0.035 Score=56.75 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|+++|.+|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999853
No 463
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.53 E-value=0.033 Score=54.65 Aligned_cols=21 Identities=33% Similarity=0.676 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999885
No 464
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=93.53 E-value=0.032 Score=58.29 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
.|+|||++|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 465
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.53 E-value=0.037 Score=53.38 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.4
Q ss_pred CcEEEEECCCCccHHHHHHHHhc
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
.=+|+++|++|+|||||++.+.+
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34799999999999999998875
No 466
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.49 E-value=0.071 Score=55.35 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=29.3
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs 674 (728)
++.++|+||+-. ++......+.+.+++...+..+|+++++.+
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 478999999744 555666667777776555666777777654
No 467
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=93.48 E-value=0.037 Score=56.78 Aligned_cols=30 Identities=37% Similarity=0.464 Sum_probs=23.0
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCCCCE
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~~G~ 515 (728)
.++++||.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544444
No 468
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.47 E-value=0.036 Score=53.10 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=22.2
Q ss_pred EEEEECCCCccHHHHHHHHhc-----CCCCCCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFR-----SFDTHSG 514 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g-----ly~p~~G 514 (728)
+|+|+|++|+|||||++-+.+ -|.|+-|
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~ 55 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE 55 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCC
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCcccCCCcc
Confidence 699999999999999987764 2455555
No 469
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.47 E-value=0.035 Score=58.76 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=22.2
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
..+.|+||||||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999988653
No 470
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.43 E-value=0.025 Score=53.56 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=9.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988764
No 471
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.08 Score=57.64 Aligned_cols=29 Identities=24% Similarity=0.394 Sum_probs=24.7
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
-++|..-+-+.||+|+|||+|++.+++-.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~ 206 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHT 206 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhh
Confidence 45666679999999999999999998753
No 472
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.40 E-value=0.16 Score=65.45 Aligned_cols=37 Identities=32% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCceeeeeee--EEEeCCcEEEEECCCCccHHHHHHHHh
Q 004826 470 TERKILDGVS--FVVPAGKSVAIVGTSGSGKSTILRLLF 506 (728)
Q Consensus 470 ~~~~vL~~is--l~I~~Ge~vAIVG~SGSGKSTL~~LL~ 506 (728)
...+.|+++. .-+++|+.+.++|++|||||||+..+.
T Consensus 1064 TGi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~ 1102 (2050)
T 3cmu_A 1064 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVI 1102 (2050)
T ss_dssp CSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHH
T ss_pred CCcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456788876 579999999999999999999998776
No 473
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.36 E-value=0.034 Score=53.87 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.7
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 27 ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999999886
No 474
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.35 E-value=0.094 Score=57.75 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=26.2
Q ss_pred EEEeCCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 480 FVVPAGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 480 l~I~~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+-++|..-+-+.||+|+|||+|++.+++-.
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 357778889999999999999999999853
No 475
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.33 E-value=0.013 Score=63.25 Aligned_cols=51 Identities=31% Similarity=0.456 Sum_probs=39.0
Q ss_pred eEEEEEEEEEecCCceeee-----------eeeEEEeCCcEEEEECCCCccHHHHHHHHhcC
Q 004826 458 SIQFDNVHFSYLTERKILD-----------GVSFVVPAGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 458 ~I~f~nVsF~Y~~~~~vL~-----------~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
.+.|++++--||.++.-++ |.=+.|-+|++.+|+|++|+|||||++.|.+-
T Consensus 137 r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 137 RVNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp CCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ccccccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 3456666555654444455 55578999999999999999999999988875
No 476
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=93.33 E-value=0.033 Score=57.53 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.2
Q ss_pred EEEEECCCCccHHHHHHHHhcCC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gly 509 (728)
+|+|||.+|+|||||++.|.|--
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 79999999999999999999854
No 477
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.33 E-value=0.05 Score=53.07 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.4
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+|+|||++|+|||||++-+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999988754
No 478
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.32 E-value=0.024 Score=55.61 Aligned_cols=21 Identities=24% Similarity=0.631 Sum_probs=19.4
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.|++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998874
No 479
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.30 E-value=0.049 Score=53.52 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.2
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
=+|+|||++|+|||||++-+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999988753
No 480
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.26 E-value=0.059 Score=57.12 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=28.7
Q ss_pred CCCEEEEeCcCcCCCHHHHHHHHHHHHHHcCCCeEEEeccCch
Q 004826 632 APPILLCDEATSALDSTTEAEILNALKSLANNRTSIFIAHRLT 674 (728)
Q Consensus 632 ~p~ILILDEaTSaLD~~tE~~I~~~L~~l~~~~TvIvIaHRLs 674 (728)
+.+|+|+||+=. +..+....+.+.|++-..+...|++|++.+
T Consensus 108 ~~kvviIdead~-l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGGG-BCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchhh-cCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 478999999853 555555666777765444456677788764
No 481
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.26 E-value=0.043 Score=54.74 Aligned_cols=75 Identities=20% Similarity=0.266 Sum_probs=44.3
Q ss_pred EEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCEEEECCEeCCCCCHHHHhcceEEEcCCCCCCcccHHHHHHcCCCCC
Q 004826 481 VVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGSIRIDGQDICEVTLESLRKSIGVVPQDTVLFNDTIFHNIRYGRLSA 560 (728)
Q Consensus 481 ~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~I~idG~di~~i~~~~lR~~Ia~V~Qd~~LF~gTIreNI~~g~~~~ 560 (728)
..++...|.|+||.||||+|.++.|+.-|. -..|. .-+-+|+.+. .+.. ....+++-+.-|.. .
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~g----~~hIs-------tGdllR~~i~---~~t~-lg~~~~~~~~~G~l-V 88 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKFH----FNHLS-------SGDLLRAEVQ---SGSP-KGKELKAMMERGEL-V 88 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHHC----CEEEC-------HHHHHHHHHT---TCCH-HHHHHHHHHHHTCC-C
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHHC----CceEc-------HHHHHHHHHH---cCCc-hHHHHHHHHhcCCC-C
Confidence 446667899999999999999999987663 22222 0123454432 1111 22345555666653 6
Q ss_pred CHHHHHHHHHH
Q 004826 561 TEEEVYDAARR 571 (728)
Q Consensus 561 sdeei~~A~~~ 571 (728)
+|+-+.+..+.
T Consensus 89 pde~~~~lv~~ 99 (217)
T 3umf_A 89 PLEVVLALLKE 99 (217)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67666555443
No 482
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.25 E-value=0.044 Score=57.58 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
...+.|+||||||||||..-|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 483
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.24 E-value=0.036 Score=53.37 Aligned_cols=25 Identities=32% Similarity=0.374 Sum_probs=21.5
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhc
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
++.=+|+|+|++|+|||||++-+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4455799999999999999998864
No 484
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.22 E-value=0.038 Score=61.31 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=31.6
Q ss_pred eeeeeeEEEeCCcEEEEECCCCccHHHHHHHHhcCCCCCCCE
Q 004826 474 ILDGVSFVVPAGKSVAIVGTSGSGKSTILRLLFRSFDTHSGS 515 (728)
Q Consensus 474 vL~~isl~I~~Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G~ 515 (728)
+++.+ +.+-+|++++|+|+||+|||||++.|.+-.....|.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~ 181 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGG 181 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCc
Confidence 44444 677899999999999999999999887654433333
No 485
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=93.18 E-value=0.045 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.3
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|||.+|+|||||++-+.+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999999864
No 486
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.18 E-value=0.046 Score=57.30 Aligned_cols=26 Identities=35% Similarity=0.769 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcCC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
++-+|+++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999887653
No 487
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.13 E-value=0.042 Score=51.83 Aligned_cols=28 Identities=21% Similarity=0.312 Sum_probs=23.7
Q ss_pred eCCcEEEEECCCCccHHHHHHHHhcCCC
Q 004826 483 PAGKSVAIVGTSGSGKSTILRLLFRSFD 510 (728)
Q Consensus 483 ~~Ge~vAIVG~SGSGKSTL~~LL~gly~ 510 (728)
..+..+.|+||+|+||||+++.+.....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 4466789999999999999999887654
No 488
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.10 E-value=0.041 Score=52.72 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.9
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999988753
No 489
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.01 E-value=0.038 Score=53.78 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=19.9
Q ss_pred CCcEEEEECCCCccHHHHHHHHhc
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
+.=+|+++|++|+|||||++-+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 345799999999999999977763
No 490
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.91 E-value=0.046 Score=59.46 Aligned_cols=25 Identities=40% Similarity=0.582 Sum_probs=21.6
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSF 509 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly 509 (728)
...++|+||||||||||..-|+.-+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3578999999999999999887655
No 491
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.89 E-value=0.044 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.515 Sum_probs=19.8
Q ss_pred cEEEEECCCCccHHHHHHHHhcC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gl 508 (728)
-+++|+|.+|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 37999999999999999877654
No 492
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.78 E-value=0.034 Score=53.03 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.5
Q ss_pred CCcEEEEECCCCccHHHHHHHHhc
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~g 507 (728)
+.=+|++||++|+|||||++-+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 345799999999999999998853
No 493
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.72 E-value=0.069 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.9
Q ss_pred EeCCcEEEEECCCCccHHHHHHHH
Q 004826 482 VPAGKSVAIVGTSGSGKSTILRLL 505 (728)
Q Consensus 482 I~~Ge~vAIVG~SGSGKSTL~~LL 505 (728)
+++|+.+-|.|++|+||||++.-+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 899999999999999999998543
No 494
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=92.70 E-value=0.05 Score=52.82 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=19.3
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|||++|+|||||++-+.+
T Consensus 31 ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhh
Confidence 699999999999999998875
No 495
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.60 E-value=0.057 Score=53.28 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=19.5
Q ss_pred EEEEECCCCccHHHHHHHHhc
Q 004826 487 SVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~g 507 (728)
+|+|+|++|+|||||++.+.+
T Consensus 15 ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 699999999999999998875
No 496
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.58 E-value=0.028 Score=54.26 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=4.6
Q ss_pred EEEEECCCCccHHHHHHHHhcC
Q 004826 487 SVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 487 ~vAIVG~SGSGKSTL~~LL~gl 508 (728)
+|+|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 7999999999999999987743
No 497
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.28 E-value=0.089 Score=63.17 Aligned_cols=35 Identities=29% Similarity=0.406 Sum_probs=26.4
Q ss_pred cEEEEECCCCccHHHHHHHHhcCCCCCCC-EEEECC
Q 004826 486 KSVAIVGTSGSGKSTILRLLFRSFDTHSG-SIRIDG 520 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~gly~p~~G-~I~idG 520 (728)
..+.|+||+|+|||++++.|........+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999987644332 244443
No 498
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=92.27 E-value=0.06 Score=58.12 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCccHHHHHHHHhcC
Q 004826 484 AGKSVAIVGTSGSGKSTILRLLFRS 508 (728)
Q Consensus 484 ~Ge~vAIVG~SGSGKSTL~~LL~gl 508 (728)
++..+++||.+|+|||||+|.|.+-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999986
No 499
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.17 E-value=0.081 Score=54.87 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=23.2
Q ss_pred CcEEEEECCCCccHHHHHHHHhcCCCCCCC
Q 004826 485 GKSVAIVGTSGSGKSTILRLLFRSFDTHSG 514 (728)
Q Consensus 485 Ge~vAIVG~SGSGKSTL~~LL~gly~p~~G 514 (728)
+-++++||.+|+|||||++.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 347999999999999999999986543333
No 500
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.11 E-value=0.064 Score=52.19 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.7
Q ss_pred cEEEEECCCCccHHHHHHHHhc
Q 004826 486 KSVAIVGTSGSGKSTILRLLFR 507 (728)
Q Consensus 486 e~vAIVG~SGSGKSTL~~LL~g 507 (728)
=+|+|+|++|+|||||++.+.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999998874
Done!