BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004828
(728 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A1A4M6|STAR5_BOVIN StAR-related lipid transfer protein 5 OS=Bos taurus GN=STARD5 PE=2
SV=1
Length = 213
Score = 40.8 bits (94), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 235 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTG 294
WK R NGV + S G L K G+++ + + V++ V L R +WD
Sbjct: 27 WKICREGNGVSV--SWRPSVEFPGNLYKGEGIVNGTPEQVWDCVKPLAGTLRAQWDENVN 84
Query: 295 DLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRP 354
E+++S + T P + + S RDFV +DGT + H P
Sbjct: 85 SFEIIESLTDTL-LFSRTTTPSAVMKLISPRDFVDLILVRTYEDGTISSNAANVEHPSCP 143
Query: 355 PKSGYRR 361
P Y R
Sbjct: 144 PNPAYVR 150
>sp|Q9EPQ7|STAR5_MOUSE StAR-related lipid transfer protein 5 OS=Mus musculus GN=Stard5
PE=2 SV=2
Length = 213
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
Query: 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWD 290
+A WK R NGV I S+ G L + G++ + + V++ + + R +WD
Sbjct: 23 DASGWKKCREGNGVSI--SWRPSEEFPGNLYRGEGILCGTPEEVWDCIKPVASGLREKWD 80
Query: 291 MLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVH 350
E+V S V T P + S RDFV + +DGT + H
Sbjct: 81 DNVSSFEIVQSITDML-CVSRTSTPSAAMKLISPRDFVDLVLVKKYEDGTISSNATHVEH 139
Query: 351 KKRPPKSGYRR 361
PPK G+ R
Sbjct: 140 PLCPPKPGFVR 150
>sp|D1ZCP6|ATP25_SORMK ATPase synthesis protein 25, mitochondrial OS=Sordaria macrospora
(strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell)
GN=ATP25 PE=3 SV=1
Length = 705
Score = 38.9 bits (89), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 19/141 (13%)
Query: 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLD 179
MRL+NR E+ + A A EAR W+E +A Q + L+R G ++ + +L
Sbjct: 434 MRLFNRAIEN----LPSAQAWEARLWLEKAARALQHPDHGLARLGDLIQEMKLSGAADLS 489
Query: 180 GHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSV------RGEGFFEGDIGDA-IEA 232
++ LR + I + +RQ + L V RGE E D+ A IE+
Sbjct: 490 RE-----KFVDFLRMIFAIPETTDAGVRQQASLSMDVIDMLFSRGEKVIEFDVVVAVIES 544
Query: 233 HEWKCVRTLNGVRI---FEDV 250
VRT R+ FED+
Sbjct: 545 LLRTGVRTPEARRLLTQFEDL 565
>sp|Q7SAC2|ATP25_NEUCR ATPase synthesis protein 25, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=atp-25 PE=3 SV=1
Length = 699
Score = 37.7 bits (86), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 15/117 (12%)
Query: 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSRGGSARNKLNMETEINLD 179
MRL+NR E+ + A A EAR W+E +A Q + +L+R G ++ + N+
Sbjct: 428 MRLFNRAIEN----LPSAQAWEARLWVEKAARALQHPDHDLARLGDLIQEMKLSGAANVS 483
Query: 180 GHRPRVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSV------RGEGFFEGDIGDAI 230
++ LR + I + +RQ + L V RGE E D+ A+
Sbjct: 484 RE-----KFVDLLRMIFAIPETTDAGVRQQASLSMDVIDMLFSRGEKVIEYDVVVAV 535
>sp|Q5FG09|SYD_EHRRG Aspartate--tRNA ligase OS=Ehrlichia ruminantium (strain Gardel)
GN=aspS PE=3 SV=1
Length = 590
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 619 INLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPS-IAEGYWMVKR 677
IN + P + +LYY S++P +N L+ + D T++FRD+ FK+ S I +G MV R
Sbjct: 270 INKEFPKISYHDAMLYYGSDKPDLRNPLVIQ--DVTEIFRDSEFKIFNSNIKQG--MVVR 325
Query: 678 AV 679
A+
Sbjct: 326 AI 327
>sp|Q5HAL5|SYD_EHRRW Aspartate--tRNA ligase OS=Ehrlichia ruminantium (strain
Welgevonden) GN=aspS PE=3 SV=1
Length = 590
Score = 37.4 bits (85), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 619 INLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPS-IAEGYWMVKR 677
IN + P + +LYY S++P +N L+ + D T++FRD+ FK+ S I +G MV R
Sbjct: 270 INKEFPKISYHDAMLYYGSDKPDLRNPLVIQ--DVTEIFRDSEFKIFNSNIKQG--MVVR 325
Query: 678 AV 679
A+
Sbjct: 326 AI 327
>sp|Q5R8P9|STAR5_PONAB StAR-related lipid transfer protein 5 OS=Pongo abelii GN=STARD5
PE=2 SV=1
Length = 213
Score = 37.0 bits (84), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 3/127 (2%)
Query: 235 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTG 294
WK R NGV + S G L + G++ + + V++ V R +WD
Sbjct: 27 WKICREGNGVSV--SWRPSMEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVT 84
Query: 295 DLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRP 354
E++ S V T P + S RDFV R +DGT + H P
Sbjct: 85 GFEIIQSITDTL-CVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLCP 143
Query: 355 PKSGYRR 361
PK G+ R
Sbjct: 144 PKPGFVR 150
>sp|Q9NSY2|STAR5_HUMAN StAR-related lipid transfer protein 5 OS=Homo sapiens GN=STARD5
PE=1 SV=2
Length = 213
Score = 36.6 bits (83), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 3/127 (2%)
Query: 235 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTG 294
WK R NGV + S G L + G++ + + V++ V R +WD
Sbjct: 27 WKICREGNGVSV--SWRPSVEFPGNLYRGEGIVYGTLEEVWDCVKPAVGGLRVKWDENVT 84
Query: 295 DLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRP 354
E++ S V T P + S RDFV R +DGT + H P
Sbjct: 85 GFEIIQSITDTL-CVSRTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLCP 143
Query: 355 PKSGYRR 361
PK G+ R
Sbjct: 144 PKPGFVR 150
>sp|Q967D7|TUTL_DROME Protein turtle OS=Drosophila melanogaster GN=tutl PE=2 SV=2
Length = 1531
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 587 WFKVD-KAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNS 645
WF +D A R ++ P+ ++ G + ++N Q G P +L+Y PV+ +
Sbjct: 244 WFHLDVHAPPRFSVTPEDIIYVNLGDSI----ILNCQADGTPTPE-ILWYKDANPVDPSP 298
Query: 646 LLGKFVDGTDM 656
+G F DGT++
Sbjct: 299 TVGIFNDGTEL 309
>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13
PE=3 SV=1
Length = 862
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 44 GYFEYFGWVYHMGTNSI-GHEYCHLR 68
G +E FG++ HMGT+++ GH CHL+
Sbjct: 803 GRYELFGFISHMGTSTMSGHYVCHLK 828
>sp|Q3YRF1|SYD_EHRCJ Aspartate--tRNA ligase OS=Ehrlichia canis (strain Jake) GN=aspS
PE=3 SV=1
Length = 590
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 619 INLQVPGKPNYSLVLYYASERPVNKNSLLGKFVDGTDMFRDARFKLIPS-IAEGYWMVKR 677
I+ + P ++ +LYY S++P +N L+ + D T++FRD++F + S I +G MV R
Sbjct: 270 IHKEFPRISYHNAMLYYGSDKPDLRNPLIIQ--DVTEIFRDSQFNIFNSNIKKG--MVVR 325
Query: 678 AV 679
A+
Sbjct: 326 AI 327
>sp|A5DUW8|CHL1_LODEL ATP-dependent RNA helicase CHL1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=CHL1 PE=3 SV=1
Length = 892
Score = 33.5 bits (75), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 13/99 (13%)
Query: 206 LRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVG 265
L +S+ LG V GE F+G GD + H+ + LN +I + G V+ VG
Sbjct: 482 LAKSAKLGDQVVGEEIFQGSTGDLVNIHKMEAY--LNKSKIAFKLQSYMEKIG--VEDVG 537
Query: 266 V---IDASADTVFEVVLNL------ERHQRYEWDMLTGD 295
+++S+ +F++V L ++ ++ WD + GD
Sbjct: 538 TDFKLNSSSPILFDIVKFLKCLSYPKKEGKFFWDRIYGD 576
>sp|A1WL05|CH60_VEREI 60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2)
GN=groL PE=3 SV=1
Length = 552
Score = 33.1 bits (74), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
Query: 149 FDQAKQQAEVELSRGGSARNKLNMETEINLDGHRPRVRRYAHGLRKLIR---IGHGPETL 205
+D+ K Q V GG A K+ TE+ + + RV H R + + G
Sbjct: 360 YDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVAF 419
Query: 206 LRQSSDLGGSVRGE 219
LR +GG+++G+
Sbjct: 420 LRARQAIGGTIKGD 433
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291,694,464
Number of Sequences: 539616
Number of extensions: 13287869
Number of successful extensions: 53756
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 53389
Number of HSP's gapped (non-prelim): 349
length of query: 728
length of database: 191,569,459
effective HSP length: 125
effective length of query: 603
effective length of database: 124,117,459
effective search space: 74842827777
effective search space used: 74842827777
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)