Query 004828
Match_columns 728
No_of_seqs 325 out of 614
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 13:36:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004828.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004828hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00188 enhanced disease resi 100.0 6E-174 1E-178 1463.0 57.8 642 44-727 2-683 (719)
2 PF07059 DUF1336: Protein of u 100.0 3.9E-59 8.5E-64 477.5 17.3 177 551-727 1-205 (227)
3 cd08904 START_STARD6-like Lipi 100.0 1.3E-35 2.9E-40 300.0 22.9 184 231-428 20-203 (204)
4 cd08914 START_STARD15-like Lip 100.0 9.7E-35 2.1E-39 298.3 20.1 191 193-402 17-212 (236)
5 cd08873 START_STARD14_15-like 100.0 4.7E-34 1E-38 293.6 21.2 186 193-396 16-205 (235)
6 cd08913 START_STARD14-like Lip 100.0 2.3E-33 4.9E-38 289.9 22.3 182 200-399 27-212 (240)
7 cd08868 START_STARD1_3_like Ch 100.0 4.2E-32 9.1E-37 273.9 24.4 185 230-430 21-207 (208)
8 cd08907 START_STARD8-like C-te 100.0 8.9E-33 1.9E-37 277.0 17.8 180 229-430 23-204 (205)
9 cd08909 START_STARD13-like C-t 100.0 2.4E-32 5.1E-37 276.2 19.6 177 233-430 27-204 (205)
10 cd08902 START_STARD4-like Lipi 100.0 5.2E-32 1.1E-36 271.0 20.2 182 230-428 20-201 (202)
11 cd08869 START_RhoGAP C-termina 100.0 1.5E-31 3.2E-36 268.8 22.3 178 231-430 17-196 (197)
12 cd08906 START_STARD3-like Chol 100.0 1.1E-31 2.5E-36 272.3 21.3 188 227-430 19-208 (209)
13 cd08867 START_STARD4_5_6-like 100.0 3.5E-31 7.6E-36 266.8 23.2 184 232-428 21-205 (206)
14 cd08903 START_STARD5-like Lipi 100.0 7.8E-31 1.7E-35 265.7 23.2 188 231-430 20-207 (208)
15 cd08874 START_STARD9-like C-te 100.0 7E-31 1.5E-35 265.9 20.9 192 222-430 9-205 (205)
16 cd08871 START_STARD10-like Lip 100.0 2.4E-29 5.1E-34 256.2 21.0 192 227-432 17-211 (222)
17 smart00234 START in StAR and p 100.0 2.2E-28 4.7E-33 244.0 23.2 178 227-418 13-193 (206)
18 cd08905 START_STARD1-like Chol 100.0 1.1E-28 2.5E-33 250.1 19.7 184 231-430 23-208 (209)
19 cd08872 START_STARD11-like Cer 100.0 5.6E-28 1.2E-32 249.5 19.2 189 232-431 25-227 (235)
20 cd08908 START_STARD12-like C-t 100.0 1.6E-27 3.4E-32 241.2 18.3 176 233-430 27-203 (204)
21 PF01852 START: START domain; 100.0 6.4E-27 1.4E-31 232.9 22.4 188 229-432 15-204 (206)
22 cd08911 START_STARD7-like Lipi 99.9 1.7E-26 3.7E-31 233.8 20.0 180 231-426 19-202 (207)
23 cd00177 START Lipid-binding ST 99.9 5.1E-25 1.1E-29 214.3 22.8 154 233-399 15-168 (193)
24 cd08910 START_STARD2-like Lipi 99.9 2E-25 4.3E-30 226.2 16.7 176 231-427 23-203 (207)
25 cd08876 START_1 Uncharacterize 99.9 1.3E-24 2.8E-29 215.7 21.2 180 228-427 11-193 (195)
26 cd08870 START_STARD2_7-like Li 99.9 5.8E-24 1.3E-28 215.3 20.7 178 233-428 22-206 (209)
27 cd08877 START_2 Uncharacterize 99.9 5.5E-22 1.2E-26 201.3 16.7 181 227-423 16-210 (215)
28 KOG2761 START domain-containin 99.9 1.3E-20 2.9E-25 190.2 16.7 168 229-406 25-196 (219)
29 KOG1739 Serine/threonine prote 99.6 2.5E-15 5.4E-20 164.3 8.5 165 230-399 400-576 (611)
30 cd08875 START_ArGLABRA2_like C 99.5 2.4E-13 5.1E-18 140.0 17.1 134 256-399 57-200 (229)
31 cd08864 SRPBCC_DUF3074 DUF3074 99.1 1.8E-09 3.9E-14 110.4 16.8 131 286-429 65-207 (208)
32 cd01246 PH_oxysterol_bp Oxyste 99.0 1.5E-09 3.2E-14 94.4 9.9 91 48-152 1-91 (91)
33 smart00233 PH Pleckstrin homol 98.9 1.1E-08 2.3E-13 87.1 12.0 100 47-153 2-101 (102)
34 PF00169 PH: PH domain; Inter 98.9 6.7E-09 1.4E-13 90.2 10.3 100 47-153 2-103 (104)
35 cd01251 PH_centaurin_alpha Cen 98.9 1E-08 2.2E-13 93.6 9.8 99 48-153 1-100 (103)
36 cd01260 PH_CNK Connector enhan 98.8 3.3E-08 7.1E-13 88.2 10.1 94 47-152 1-96 (96)
37 cd01257 PH_IRS Insulin recepto 98.7 1.1E-07 2.3E-12 87.1 11.0 92 46-151 2-100 (101)
38 cd01235 PH_SETbf Set binding f 98.6 2E-07 4.3E-12 83.4 9.9 95 48-153 1-101 (101)
39 cd01238 PH_Tec Tec pleckstrin 98.6 1.9E-07 4.1E-12 85.7 9.8 99 48-151 2-105 (106)
40 cd01250 PH_centaurin Centaurin 98.6 2.7E-07 5.8E-12 80.6 9.5 94 48-152 1-94 (94)
41 cd01252 PH_cytohesin Cytohesin 98.6 4.8E-07 1E-11 84.9 11.6 95 48-154 2-114 (125)
42 cd01247 PH_GPBP Goodpasture an 98.6 3.7E-07 8.1E-12 81.7 10.1 87 48-151 1-90 (91)
43 cd01233 Unc104 Unc-104 pleckst 98.6 4.3E-07 9.3E-12 82.3 10.6 95 47-153 3-98 (100)
44 cd00900 PH-like Pleckstrin hom 98.5 3.7E-07 8E-12 77.6 8.6 96 48-152 1-99 (99)
45 cd01265 PH_PARIS-1 PARIS-1 ple 98.5 4.9E-07 1.1E-11 81.3 9.6 91 48-152 1-93 (95)
46 PF15413 PH_11: Pleckstrin hom 98.5 2.7E-07 5.8E-12 85.6 8.1 96 48-152 1-112 (112)
47 cd01241 PH_Akt Akt pleckstrin 98.4 1.8E-06 3.8E-11 78.7 10.3 95 47-152 2-101 (102)
48 cd01266 PH_Gab Gab (Grb2-assoc 98.4 2.1E-06 4.6E-11 78.8 9.8 96 49-152 2-107 (108)
49 cd01244 PH_RasGAP_CG9209 RAS_G 98.3 4.2E-06 9E-11 76.3 8.8 84 58-152 15-98 (98)
50 cd00821 PH Pleckstrin homology 98.2 5.9E-06 1.3E-10 69.5 7.8 95 48-152 1-96 (96)
51 cd01264 PH_melted Melted pleck 98.1 1.2E-05 2.7E-10 73.7 9.5 97 48-152 2-100 (101)
52 cd01236 PH_outspread Outspread 98.1 1.2E-05 2.6E-10 74.0 9.1 94 48-150 1-101 (104)
53 cd01254 PH_PLD Phospholipase D 98.1 1.9E-05 4.1E-10 74.3 9.6 80 66-152 34-121 (121)
54 cd01219 PH_FGD FGD (faciogenit 98.1 3.5E-05 7.6E-10 70.1 10.8 97 47-154 3-100 (101)
55 cd01253 PH_beta_spectrin Beta- 98.0 3.3E-05 7.1E-10 69.9 9.6 95 48-151 1-103 (104)
56 PF11274 DUF3074: Protein of u 98.0 0.00018 3.9E-09 72.6 15.9 147 268-424 13-180 (184)
57 cd07813 COQ10p_like Coenzyme Q 98.0 4.5E-05 9.8E-10 71.5 10.6 125 263-418 3-128 (138)
58 cd01245 PH_RasGAP_CG5898 RAS G 98.0 2.3E-05 5E-10 71.5 7.7 87 50-151 3-97 (98)
59 cd01263 PH_anillin Anillin Ple 98.0 3.4E-05 7.5E-10 73.0 8.8 105 46-152 1-122 (122)
60 cd01220 PH_CDEP Chondrocyte-de 97.9 7.8E-05 1.7E-09 68.0 10.6 96 47-154 3-98 (99)
61 PF15409 PH_8: Pleckstrin homo 97.9 3E-05 6.5E-10 69.6 7.4 85 50-152 1-88 (89)
62 cd08866 SRPBCC_11 Ligand-bindi 97.9 0.00035 7.6E-09 65.5 14.4 142 262-429 2-143 (144)
63 cd01256 PH_dynamin Dynamin ple 97.8 0.0001 2.3E-09 67.0 9.0 96 48-152 3-104 (110)
64 KOG2200 Tumour suppressor prot 97.8 4.2E-06 9E-11 95.0 -0.5 92 321-432 575-666 (674)
65 cd01237 Unc112 Unc-112 pleckst 97.6 0.00029 6.2E-09 65.2 8.8 91 57-153 12-103 (106)
66 cd07819 SRPBCC_2 Ligand-bindin 97.5 0.0022 4.9E-08 59.1 13.7 134 261-427 4-139 (140)
67 KOG0930 Guanine nucleotide exc 97.5 0.00024 5.3E-09 74.9 7.9 97 46-154 260-376 (395)
68 cd01230 PH_EFA6 EFA6 Pleckstri 97.3 0.0015 3.3E-08 61.5 10.1 98 49-153 3-111 (117)
69 cd05018 CoxG Carbon monoxide d 97.2 0.0054 1.2E-07 56.9 12.5 114 261-399 3-116 (144)
70 cd08861 OtcD1_ARO-CYC_like N-t 97.0 0.011 2.4E-07 55.2 12.2 109 264-399 4-114 (142)
71 PF12814 Mcp5_PH: Meiotic cell 97.0 0.0067 1.5E-07 57.4 10.6 102 49-153 12-121 (123)
72 cd08860 TcmN_ARO-CYC_like N-te 96.8 0.045 9.8E-07 53.0 15.2 136 264-430 6-144 (146)
73 cd07817 SRPBCC_8 Ligand-bindin 96.7 0.059 1.3E-06 49.7 14.3 107 262-399 3-109 (139)
74 cd07821 PYR_PYL_RCAR_like Pyra 96.4 0.12 2.7E-06 47.2 14.5 137 261-428 3-139 (140)
75 PF10604 Polyketide_cyc2: Poly 96.4 0.29 6.3E-06 44.8 16.7 135 261-428 4-138 (139)
76 cd01224 PH_Collybistin Collybi 95.7 0.19 4E-06 47.1 11.8 100 47-151 3-105 (109)
77 PF03364 Polyketide_cyc: Polyk 95.7 0.072 1.6E-06 49.0 9.3 109 267-399 1-109 (130)
78 PRK10724 hypothetical protein; 95.6 0.27 5.9E-06 48.5 13.5 113 259-399 15-127 (158)
79 PF15410 PH_9: Pleckstrin homo 95.4 0.13 2.8E-06 48.3 9.9 99 48-153 2-118 (119)
80 cd01239 PH_PKD Protein kinase 94.6 0.12 2.7E-06 48.6 7.3 51 48-105 2-52 (117)
81 cd07812 SRPBCC START/RHO_alpha 94.3 1.9 4.2E-05 37.8 14.2 113 262-399 2-114 (141)
82 cd08865 SRPBCC_10 Ligand-bindi 93.8 1.6 3.5E-05 39.7 12.9 36 263-300 3-38 (140)
83 KOG3845 MLN, STAR and related 93.6 0.0041 8.9E-08 65.4 -5.0 156 235-399 27-182 (241)
84 KOG0690 Serine/threonine prote 93.6 0.12 2.5E-06 56.8 5.8 101 44-154 13-117 (516)
85 cd01223 PH_Vav Vav pleckstrin 92.7 0.48 1E-05 44.9 7.8 88 65-153 20-111 (116)
86 cd01218 PH_phafin2 Phafin2 Pl 92.4 1 2.2E-05 41.8 9.4 93 47-156 5-101 (104)
87 cd07823 SRPBCC_5 Ligand-bindin 92.3 3.2 6.9E-05 39.4 13.1 139 263-428 3-144 (146)
88 cd01234 PH_CADPS CADPS (Ca2+-d 92.3 0.18 3.9E-06 46.8 4.2 99 48-153 4-110 (117)
89 cd08862 SRPBCC_Smu440-like Lig 91.8 7.2 0.00016 35.7 14.5 40 261-302 3-42 (138)
90 cd07824 SRPBCC_6 Ligand-bindin 90.7 8.8 0.00019 36.4 14.2 36 263-300 5-40 (146)
91 cd01243 PH_MRCK MRCK (myotonic 90.5 3.4 7.3E-05 39.5 10.8 106 46-152 2-118 (122)
92 cd01261 PH_SOS Son of Sevenles 90.0 2 4.4E-05 40.4 8.9 99 47-153 5-109 (112)
93 PF15408 PH_7: Pleckstrin homo 90.0 0.23 5E-06 44.6 2.5 92 49-150 1-94 (104)
94 cd01221 PH_ephexin Ephexin Ple 89.9 2.6 5.6E-05 40.5 9.7 95 48-150 5-119 (125)
95 cd07818 SRPBCC_1 Ligand-bindin 89.5 15 0.00032 34.6 14.6 38 261-300 4-41 (150)
96 cd07822 SRPBCC_4 Ligand-bindin 89.0 18 0.00038 32.9 14.5 35 262-298 3-37 (141)
97 PTZ00267 NIMA-related protein 88.7 1.1 2.3E-05 51.2 7.4 99 44-153 375-476 (478)
98 cd01222 PH_clg Clg (common-sit 87.9 4.6 0.0001 37.0 9.5 91 47-153 5-95 (97)
99 cd01259 PH_Apbb1ip Apbb1ip (Am 86.2 2.4 5.3E-05 40.0 6.8 104 47-153 1-108 (114)
100 cd01242 PH_ROK Rok (Rho- assoc 85.0 7.9 0.00017 36.6 9.5 94 47-153 1-110 (112)
101 PF06240 COXG: Carbon monoxide 84.6 31 0.00067 32.9 13.8 111 264-399 2-112 (140)
102 KOG2059 Ras GTPase-activating 84.3 2.2 4.7E-05 50.9 6.8 103 42-154 561-665 (800)
103 KOG1090 Predicted dual-specifi 82.8 1.1 2.4E-05 54.9 3.7 96 44-153 1632-1731(1732)
104 cd01249 PH_oligophrenin Oligop 79.5 16 0.00034 34.3 9.2 94 48-150 1-102 (104)
105 cd07825 SRPBCC_7 Ligand-bindin 79.3 53 0.0012 30.4 15.5 29 262-292 3-31 (144)
106 PF14593 PH_3: PH domain; PDB: 78.2 5.3 0.00011 37.2 5.8 89 44-156 11-102 (104)
107 cd01225 PH_Cool_Pix Cool (clon 77.7 7.5 0.00016 36.7 6.6 80 62-152 25-108 (111)
108 cd07816 Bet_v1-like Ligand-bin 74.7 84 0.0018 30.3 13.9 119 261-398 3-122 (148)
109 PLN02866 phospholipase D 68.5 17 0.00038 45.8 8.6 79 66-153 219-307 (1068)
110 cd01232 PH_TRIO Trio pleckstri 68.3 37 0.00079 32.1 8.9 90 63-154 22-113 (114)
111 KOG3640 Actin binding protein 63.7 18 0.00039 44.9 7.2 114 38-154 982-1107(1116)
112 KOG4236 Serine/threonine prote 62.5 5.8 0.00013 46.5 2.9 38 41-81 408-445 (888)
113 COG2867 Oligoketide cyclase/li 61.3 93 0.002 30.9 10.5 108 261-399 4-115 (146)
114 COG3427 Carbon monoxide dehydr 52.5 1.6E+02 0.0034 29.4 10.4 41 262-307 4-44 (146)
115 TIGR01599 PYST-A Plasmodium yo 51.4 2.5E+02 0.0054 29.5 12.3 112 260-376 60-201 (208)
116 KOG1117 Rho- and Arf-GTPase ac 51.0 35 0.00077 42.1 6.8 83 61-152 1047-1130(1186)
117 cd07820 SRPBCC_3 Ligand-bindin 50.3 19 0.00041 33.7 3.8 38 263-302 3-40 (137)
118 cd01248 PH_PLC Phospholipase C 49.3 59 0.0013 30.1 6.8 94 51-151 11-114 (115)
119 cd01262 PH_PDK1 3-Phosphoinosi 46.2 58 0.0013 29.7 5.9 75 59-152 10-87 (89)
120 KOG4424 Predicted Rho/Rac guan 44.9 49 0.0011 39.2 6.6 96 47-155 273-371 (623)
121 cd01227 PH_Dbs Dbs (DBL's big 44.9 2.1E+02 0.0046 27.9 10.0 90 65-157 29-119 (133)
122 cd01258 PH_syntrophin Syntroph 44.2 66 0.0014 30.3 6.2 99 50-151 3-107 (108)
123 cd07814 SRPBCC_CalC_Aha1-like 42.3 2.6E+02 0.0057 25.2 13.6 29 262-292 3-31 (139)
124 KOG3751 Growth factor receptor 36.1 1.1E+02 0.0025 36.0 7.7 109 43-154 314-425 (622)
125 KOG1451 Oligophrenin-1 and rel 34.6 1.2E+02 0.0025 36.4 7.5 105 39-152 258-366 (812)
126 cd00837 EVH1 EVH1 (Enabled, Va 30.1 2.1E+02 0.0044 26.3 7.1 80 72-153 4-104 (104)
127 KOG1264 Phospholipase C [Lipid 28.7 75 0.0016 39.3 4.8 45 114-158 871-915 (1267)
128 KOG1117 Rho- and Arf-GTPase ac 27.5 1.4E+02 0.003 37.3 6.7 97 48-152 494-600 (1186)
129 cd08893 SRPBCC_CalC_Aha1-like_ 27.3 56 0.0012 29.7 2.9 29 262-292 3-31 (136)
130 PTZ00283 serine/threonine prot 24.4 81 0.0018 36.5 4.1 39 113-153 451-489 (496)
131 KOG3723 PH domain protein Melt 23.5 55 0.0012 38.9 2.5 94 59-160 749-843 (851)
132 cd08898 SRPBCC_CalC_Aha1-like_ 22.3 82 0.0018 29.1 3.0 30 261-292 3-32 (145)
No 1
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=100.00 E-value=5.9e-174 Score=1462.99 Aligned_cols=642 Identities=29% Similarity=0.525 Sum_probs=568.0
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
+.+.|||||||||+||||++|||+|||||+|++|+|||++|+++ ++|||||+||+||||||+|||+|||++||||+||
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~--~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Y 79 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN--QVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVY 79 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc--cccceeeccCCCceEeecCceEEcCceEEEEEEe
Confidence 46779999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHHHhc---------------CCCCCCCCcchhh-----cccCCCCC
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVELSR---------------GGSARNKLNMETE-----INLDGHRP 183 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~~~~~~---------------~~~~~~~~~~~~~-----~~~~~~~~ 183 (728)
|+++|++||+|||+|+|||++||+||++|++|++..... .+...+.++++++ .++++|||
T Consensus 80 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 159 (719)
T PLN00188 80 NKKEKYHRITMAAFNIQEALIWKEKIESVIDQHQDSQVPNGNKYASFEYKSGMDNGRTASSSDHESQFSAQEDEEDTHRD 159 (719)
T ss_pred cCCCccccEEEecCCHHHHHHHHHHHHHHHhhhccccccccccccceeeccccccccccccccccccccccccccccCcc
Confidence 999999999999999999999999999999987333111 1233344555543 44566775
Q ss_pred ccccccccceEEEEecCCCCCcccCCCCCCCCccCCCCCCCcccccccCCCCEEEEEeCCEEEEEEecCCC---CCcccE
Q 004828 184 RVRRYAHGLRKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDIGDAIEAHEWKCVRTLNGVRIFEDVADSK---SGRGVL 260 (728)
Q Consensus 184 ~~~~~~~~~~~l~~~g~g~~~~~~~ws~~~~~~~~~l~~~~~~~~~~a~sgW~l~~~kngVrVy~~~~~~~---~s~~~~ 260 (728)
+.|++|||+|||.+.++|+...+. +++|+++++++++.+.|++++|+||+|||++..+.. .+++++
T Consensus 160 --------~~r~~tig~gp~~s~~~~t~~~~~---~~~~~~~~~d~~~~~~Wr~~~c~NGlRiF~e~~~~~~~~~~~~~~ 228 (719)
T PLN00188 160 --------LLRRTTIGNGPPDSVLDWTKEFDS---ELSNQNSNNQAFSRKHWRLLQCQNGLRIFEELLEVDYLPRSCSRA 228 (719)
T ss_pred --------cceeeeccCCCcchhcccccccCc---cccccCCCccccccCCeEEEEeeccceeehhhhccccccccCCce
Confidence 555569999999999999996666 788999999999999999999999999999987764 556799
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
||++|+|+++|++||++||+++. .|.+||.++.++++||+||+||||+|.++++.|+|++++|||||++|+|++++||+
T Consensus 229 mKavGVV~aspE~Ifd~Vm~~~~-~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eDGs 307 (719)
T PLN00188 229 MKAVGVVEATCEEIFELVMSMDG-TRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGS 307 (719)
T ss_pred eEEEEEecCCHHHHHHHHhccCc-ccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCCCc
Confidence 99999999999999999999987 79999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~ 420 (728)
|+|+++||+||+|||++|||||++++|||+|.|++++ ++.++|+|+|++|+|+|||+ ++|+++++++++++||++
T Consensus 308 Yvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~--~g~~r~lv~~~lqtDlkGW~---~~y~~s~~~~~~l~mL~~ 382 (719)
T PLN00188 308 YVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPR--NGRPRTQVQHLMQIDLKGWG---VGYIPSFQQHCLLQMLNS 382 (719)
T ss_pred EEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCC--CCCCceEEEEEEEEccCccc---cccCccccccchHHHHHH
Confidence 9999999999999999999999999999999999873 45689999999999999999 899999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCccceeeeccccccCCCCCC--------ccchhhhhhhccccccCCCCCCCCCCCCCCC-CCch
Q 004828 421 VAGLKEYIGANPALKNESATVVVHSKFSDVSSSNGY--------YEDVEVQEQFYDAIAADSSSSEDEDSDDSND-PDKK 491 (728)
Q Consensus 421 Va~LRe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~f~~~~~~~~~~~~~e~~~~~~~-~~~~ 491 (728)
||+|||||+++++.++.+|++++.+|+....+++.+ ..+.+..++|+++.+. |++|+||+ ++++
T Consensus 383 VAgLrE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~dE~~~~~e 455 (719)
T PLN00188 383 VAGLREWFSQTDERGAPPRIPVMVNMASASVSSKKNQKPQESSPSLDQTNAASRNSVMMD-------EDSDDDEEFQIPE 455 (719)
T ss_pred HHHHHHHHhcCcccCccccceeecccccccccccccccccccccccccccccchhhhhhc-------cccccchhccCCC
Confidence 999999999999999999999999887663222111 1222334566655443 33333333 3333
Q ss_pred hhhhhhcchhhHHHhhhhcccCCCCCCcccCCCCCCCCcCCCccccccccCCCCCCCCcccCCCCCceeeeCCCCcccCc
Q 004828 492 DKKVKLKNVSWAIASLALKRTSVPDANKEFDCSVPPITIDPSQFRGSLHKAKDETDSNCWTSPGGKGFMIRGKTYLKDNA 571 (728)
Q Consensus 492 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~Ws~p~~~~F~VRG~~Yl~dk~ 571 (728)
..++..+.++. . .....++.+++.||+++|+|+|++++++++.+||++|++++|+|||+|||+||+
T Consensus 456 ~~~~~~~~k~~-----------~---~~~~~~~~~~~~~d~~~~~g~l~~~~~~~~~ncWs~Pd~~~F~VRG~~Yl~Dk~ 521 (719)
T PLN00188 456 SEQEPETTKNE-----------T---KDTAMEEEPQDKIDLSCFSGNLRRDDRDKARDCWRISDGNNFKVRSKNFCYDKS 521 (719)
T ss_pred ccccccccccc-----------c---cccccccCCcccccccccccccccCCCCCCCCCccCCCCcceEEcCCCcccCCc
Confidence 33322211110 0 112246678999999999999999999999999999999999999999999999
Q ss_pred ccccCccccceeeeeEEecCCcccccccCCCcccccccCCCCCeEEEEEEEcCCCCCeEEEEEEeecCCCCcchhhhhhc
Q 004828 572 KVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPGKPNYSLVLYYASERPVNKNSLLGKFV 651 (728)
Q Consensus 572 Kvpa~~~l~~lvgvD~f~s~~r~dhia~~~~~~~~~~~~~~~Pf~fivNiqvP~~p~~slV~Yf~~~~~l~~~~Ll~rF~ 651 (728)
||||+++||+|+|||||++++|+||||+||+|++|.+.++ .||+|||||||||+|+||+|+||++ +++.+++||+||+
T Consensus 522 KvPAg~~l~~lvgvDwfks~~ridhVa~r~~~~vq~a~~k-~~F~fiVNlQvPg~~~ys~V~Yf~~-~~l~~~sLl~rF~ 599 (719)
T PLN00188 522 KIPAGKHLMDLVAVDWFKDTKRMDHVARRKGCAAQVAAEK-GLFSFVVNLQVPGSTHYSMVFYFVT-KELVPGSLLQRFV 599 (719)
T ss_pred cccCCccceeeEEEEEEcCCchhhHhhcCCCchhhhhccc-CCcEEEEEEEccCCCceEEEEEEec-cCCCCchHHHHhc
Confidence 9999999999999999999999999999999999986554 5899999999999999999999999 5588999999999
Q ss_pred cCCccccccceEEeeeeccchhhhhhhhCCceeeeccceeeeEeccCCeEEEEe--------hhhhHHhhcccceeEEEe
Q 004828 652 DGTDMFRDARFKLIPSIAEGYWMVKRAVGTKACLLGKAVTCRYLRQDNFLEVII--------RGNIWFSYCYLRMLVSLF 723 (728)
Q Consensus 652 ~gdD~fRn~RfKLIp~Vv~G~wiVk~aVg~kP~LlGk~l~~~y~~g~nYlEiDv--------~~v~~lv~gy~~~LvvD~ 723 (728)
+|||+|||+||||||+|++||||||||||+|||||||||+|+||+|+||||||| ++|++||+||+++|||||
T Consensus 600 ~GDD~fRnsRfKLIP~Iv~GpWiVk~aVG~~p~llGk~l~~~Y~~g~nylEvdvDi~ss~va~~v~~l~~g~~~~lvvD~ 679 (719)
T PLN00188 600 DGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDM 679 (719)
T ss_pred cCchhHhhCceEEeccccCCceEEEeccCCcceEeeeecceeEecCCCeEEEEEeeccHHHHHHHHHHHHhhhhheEEEE
Confidence 999999999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred eeee
Q 004828 724 QFFS 727 (728)
Q Consensus 724 aFv~ 727 (728)
||+-
T Consensus 680 af~i 683 (719)
T PLN00188 680 AFLV 683 (719)
T ss_pred EEEE
Confidence 9984
No 2
>PF07059 DUF1336: Protein of unknown function (DUF1336); InterPro: IPR009769 This entry represents the C terminus (approximately 250 residues) of a number of hypothetical plant proteins of unknown function.
Probab=100.00 E-value=3.9e-59 Score=477.52 Aligned_cols=177 Identities=44% Similarity=0.820 Sum_probs=172.2
Q ss_pred ccCCCCCceeeeCCCCcccCcccccCccccceeeeeEEecCCcccccccCCCcccccccCCCCCeEEEEEEEcCC-----
Q 004828 551 WTSPGGKGFMIRGKTYLKDNAKVMGGDPLLKLIAVDWFKVDKAADRVALHPKCLVQSEAGKKLPFILVINLQVPG----- 625 (728)
Q Consensus 551 Ws~p~~~~F~VRG~~Yl~dk~Kvpa~~~l~~lvgvD~f~s~~r~dhia~~~~~~~~~~~~~~~Pf~fivNiqvP~----- 625 (728)
||+|++++|+|||+|||+||+|+||++|||+|+|||||++++|++|||+|+.++++....++.||+||||||||+
T Consensus 1 Ws~p~~~~FkVRG~~Yl~DkkKvpa~~~l~~lvgvDlf~s~~~~~hia~~~~~~~~~~~~~~~P~~fIVNlqvP~~p~~~ 80 (227)
T PF07059_consen 1 WSEPDASTFKVRGPNYLKDKKKVPAGPPLFELVGVDLFKSDKKIDHIARRPSSPVQKALEKGVPFTFIVNLQVPGYPPSM 80 (227)
T ss_pred CCCCCCCEEEEeCCCcccCCCCCcCCCcceeeEEEEEEecCCcchhhhhCcCCccccccccCCCcEEEEEEEccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred -----CCCeEEEEEEeecCCCCc------chhhhhhccCC---ccccccceEEeeeeccchhhhhhhh-CCceeeeccce
Q 004828 626 -----KPNYSLVLYYASERPVNK------NSLLGKFVDGT---DMFRDARFKLIPSIAEGYWMVKRAV-GTKACLLGKAV 690 (728)
Q Consensus 626 -----~p~~slV~Yf~~~~~l~~------~~Ll~rF~~gd---D~fRn~RfKLIp~Vv~G~wiVk~aV-g~kP~LlGk~l 690 (728)
+|+||+|+||++++++.. .+||+||++|| |+|||+||||||+|+|||||||++| |+||||||+++
T Consensus 81 f~~~~~~~~s~V~Yf~~~~~~~~~~~~~~~~ll~rF~~gd~~~d~frn~RfKlIp~vv~gpwivr~~v~~~kP~lig~~~ 160 (227)
T PF07059_consen 81 FGEIDGPGYSLVLYFRMPEPIEDDDSPPFGRLLHRFLNGDEVEDAFRNERFKLIPRVVNGPWIVRKAVYNGKPVLIGKKL 160 (227)
T ss_pred ccccccCCceEEEEEecCCccccccCchhHHHHHHHHhcCccchhhhhccEEEEEEEcCCchhhhhhhcCCCceeecCcc
Confidence 999999999999988765 79999999999 9999999999999999999999999 99999999999
Q ss_pred eeeEeccCCeEEEEe--------hhhhHHhhcccceeEEEeeeee
Q 004828 691 TCRYLRQDNFLEVII--------RGNIWFSYCYLRMLVSLFQFFS 727 (728)
Q Consensus 691 ~~~y~~g~nYlEiDv--------~~v~~lv~gy~~~LvvD~aFv~ 727 (728)
+|+||+|+||||||| ++++++|+||+++|||||||+-
T Consensus 161 ~~~y~~g~~y~E~dvdi~ss~~a~~~~~~~~~~~~~lvvd~gf~i 205 (227)
T PF07059_consen 161 QHRYFRGPNYLEIDVDIHSSYIARKVLHLVRGYLKKLVVDMGFVI 205 (227)
T ss_pred ceEEeeCCCeEEEEEEeccHHHHHHHHHHHHhhhceEEEEEEEEe
Confidence 999999999999999 8999999999999999999984
No 3
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=100.00 E-value=1.3e-35 Score=299.98 Aligned_cols=184 Identities=20% Similarity=0.216 Sum_probs=164.3
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004828 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (728)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY 310 (728)
.++||++.+.++++.||++... ...++++|++|+|+++|++||+++.+... |.+||+++.++++||+||+||+|+|
T Consensus 20 ~~~gWk~~k~~~~~~v~~k~~~--~~~gkl~k~egvi~~~~e~v~~~l~~~e~--r~~Wd~~~~~~~iie~Id~~T~I~~ 95 (204)
T cd08904 20 DTSGWKVVKTSKKITVSWKPSR--KYHGNLYRVEGIIPESPAKLIQFMYQPEH--RIKWDKSLQVYKMLQRIDSDTFICH 95 (204)
T ss_pred cccCCeEEecCCceEEEEEEcC--CCCceEEEEEEEecCCHHHHHHHHhccch--hhhhcccccceeeEEEeCCCcEEEE
Confidence 3589999999999999998642 23569999999999999999999998654 9999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEE
Q 004828 311 GTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQM 390 (728)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I 390 (728)
.++++.. .+.++|||||.+|+|++.+++.|+|++.||+||+|||++|||||+++++||+|+|+++ ++++|++||+
T Consensus 96 ~~~~~~~-~~~vspRDfV~vr~~~r~~~~~~ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~----~p~~t~l~~~ 170 (204)
T cd08904 96 TITQSFA-MGSISPRDFVDLVHIKRYEGNMNIVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPE----NPAYSKLVMF 170 (204)
T ss_pred Eeccccc-CCcccCceEEEEEEEEEeCCCEEEEEEEecccCCCCCCCCcEEEeeeccEEEEEECCC----CCCceEEEEE
Confidence 9888742 2469999999999999977789999999999999999999999999999999999987 3578999999
Q ss_pred EeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHh
Q 004828 391 LEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (728)
Q Consensus 391 ~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~ 428 (728)
+|+|||||+ |+ +.+++.|...|++++..|++-+
T Consensus 171 ~~~DlkG~l---P~--~vv~~~~~~~~~~f~~~~~~~~ 203 (204)
T cd08904 171 VQPELRGNL---SR--SVIEKTMPTNLVNLILDAKDGI 203 (204)
T ss_pred EEeCCCCCC---CH--HHHHHHhHHHHHHHHHHHHHhc
Confidence 999999999 65 4467888889999999998643
No 4
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=100.00 E-value=9.7e-35 Score=298.31 Aligned_cols=191 Identities=15% Similarity=0.171 Sum_probs=168.1
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccCCCCCCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCC
Q 004828 193 RKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDAS 270 (728)
Q Consensus 193 ~~l~~~g~g~~~~~~~ws~~~~~~~~~l~~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdas 270 (728)
+|.+.+-+--..+++|||++||+ ||||+|++ +.+++..+|++..+++||+||+++. +.-..+|+++++++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~W~l~~dkdgIkVytr~~----s~~l~fk~e~~vdvs 89 (236)
T cd08914 17 RKYVISHKEEVPLCIHWDIGNQA---SLSDSNVEALKKLAAKSGWEVTSTVEKIKIYTLEE----HDVLSVWVEKHVKRP 89 (236)
T ss_pred ceeeeeccccCceecccCCCceE---EEeeCCHHHhhhhcccCCCEEEEccCCEEEEEecC----CCcEEEEEEEEEcCC
Confidence 34443333356789999999999 99999999 7788899999999999999999952 223689999999999
Q ss_pred HHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcC-CCe-EEEEEeec
Q 004828 271 ADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGT-YTILQFPA 348 (728)
Q Consensus 271 pe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~-DGs-YvIa~~SV 348 (728)
++++|++|.|++. |++||.++.++++|+++|++.+ +|+..+|.|. ++++||||++++|++.. +|. |+|..+||
T Consensus 90 ~~~l~~LL~D~~~--r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~--Pvk~RD~V~~~s~~~~~~dg~~~~I~~~SV 164 (236)
T cd08914 90 AHLAYRLLSDFTK--RPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVN--NDKPKDLVVLVSRRKPLKDGNTYVVAVKSV 164 (236)
T ss_pred HHHHHHHHhChhh--hchhHHhhceEEEEEEeCCCcC-EEEEecCCCC--CCCCceEEEEEEEEecCCCCCEEEEEEeec
Confidence 9999999999987 9999999999999999999988 6777777552 58999999999998765 775 99999999
Q ss_pred cCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccc-cc
Q 004828 349 VHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR-WK 402 (728)
Q Consensus 349 ~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~-w~ 402 (728)
.||.+||.+||||++.+++||+|+|+++ ++|+|||++|+|| ||++ |.
T Consensus 165 p~~~~Pp~kg~VRv~~~~~G~~I~pl~~------~~~~VtY~~~~dP-g~lp~~~ 212 (236)
T cd08914 165 ILPSVPPSPQYIRSEIICAGFLIHAIDS------NSCTVSYFNQISA-SILPYFA 212 (236)
T ss_pred ccccCCCCCCcEEeEEEEEEEEEEEcCC------CcEEEEEEEEcCC-ccchheE
Confidence 9999999999999999999999999876 6899999999999 9993 53
No 5
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=100.00 E-value=4.7e-34 Score=293.61 Aligned_cols=186 Identities=15% Similarity=0.117 Sum_probs=164.2
Q ss_pred eEEEEecCCCCCcccCCCCCCCCccCCCCCCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCC
Q 004828 193 RKLIRIGHGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDAS 270 (728)
Q Consensus 193 ~~l~~~g~g~~~~~~~ws~~~~~~~~~l~~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdas 270 (728)
+|.+.+-+--..+|++||++||+ ||||+|++ +.+.+.+||++.++++||+||+++. +....+|++++++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~k~gIkVytr~~----s~~l~fk~e~~vd~s 88 (235)
T cd08873 16 RKYILSLQREVPLSVAWDRSNQM---YLSYGNVTALKRLAAKSDWTVASSTTSVTLYTLEQ----DGVLSFCVELKVQTC 88 (235)
T ss_pred cceeeecCccCceEcccCccccE---EEeeCCHHHHhhccccCCCEEEEcCCCEEEEEecC----CCceEEEEEEEecCC
Confidence 44444445557799999999999 99999999 8899999999999999999999973 333679999999999
Q ss_pred HHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEc--CCCeEEEEEeec
Q 004828 271 ADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG--QDGTYTILQFPA 348 (728)
Q Consensus 271 pe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~--~DGsYvIa~~SV 348 (728)
++++|++|.|.+. |.+||.++.++++|+++|++..|+|.++.+ |+++++||||++++|++. +++.|+|..+||
T Consensus 89 ~~~v~dlL~D~~~--R~~WD~~~~e~evI~~id~d~~iyy~~~p~---PwPvk~RDfV~~~s~~~~~~~~~~~~I~~~SV 163 (235)
T cd08873 89 ASDAFDLLSDPFK--RPEWDPHGRSCEEVKRVGEDDGIYHTTMPS---LTSEKPNDFVLLVSRRKPATDGDPYKVAFRSV 163 (235)
T ss_pred HHHHHHHHhCcch--hhhhhhcccEEEEEEEeCCCcEEEEEEcCC---CCCCCCceEEEEEEEEeccCCCCeEEEEEeee
Confidence 9999999999987 999999999999999999987777766554 346999999999999983 334699999999
Q ss_pred cCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecC
Q 004828 349 VHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSS 396 (728)
Q Consensus 349 ~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~K 396 (728)
.||.+||++|||||+..++||+|+|+++ ++|+|||++|+||+
T Consensus 164 ~h~~~Pp~kgyVR~~~~~ggW~I~p~~~------~~t~VtY~~~~dPg 205 (235)
T cd08873 164 TLPRVPQTPGYSRTEVACAGFVIRQDCG------TCTEVSYYNETNPK 205 (235)
T ss_pred ecccCCCCCCeEEEEEEeeeEEEEECCC------CcEEEEEEEEcCCC
Confidence 9999999999999999999999999875 68999999999995
No 6
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=100.00 E-value=2.3e-33 Score=289.91 Aligned_cols=182 Identities=19% Similarity=0.203 Sum_probs=163.2
Q ss_pred CCCCCcccCCCCCCCCccCCCCCCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHH
Q 004828 200 HGPETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEV 277 (728)
Q Consensus 200 ~g~~~~~~~ws~~~~~~~~~l~~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~Vfdl 277 (728)
+.-..+|+|||++||+ ||||||++ +.+.+.++|++.++++||+||+++. +....+|++++|+++++++|++
T Consensus 27 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~W~l~~~~~gI~Vyt~~~----s~~~~fK~e~~vd~s~e~v~~l 99 (240)
T cd08913 27 QTEVPLSVPWDPSNQV---YLSYNNVSALKMLVAKDNWVLSSEKNQVRLYTLEE----DKFLSFKVEMVVHVDAAQAFLL 99 (240)
T ss_pred cccCceecccCcccee---EEeecCHHHHHhhcccCCCEEEEccCCEEEEEEeC----CCccEEEEEEEEcCCHHHHHHH
Confidence 3456799999999999 99999999 8899999999999999999999754 2336889999999999999999
Q ss_pred HHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEc-CCC-eEEEEEeeccCCCCCC
Q 004828 278 VLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG-TYTILQFPAVHKKRPP 355 (728)
Q Consensus 278 L~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~-~DG-sYvIa~~SV~Hp~~Pp 355 (728)
|.|.+. |++||.++.++++|+++|++. .+|++..+.| ++++++||||++++|++. ++| .|+|+.+||.||++||
T Consensus 100 L~D~~~--r~~Wd~~~~e~~vIe~id~~~-~vY~v~~~p~-~~pvs~RDfV~~~s~~~~~~~g~~yii~~~sv~~P~~Pp 175 (240)
T cd08913 100 LSDLRR--RPEWDKHYRSCELVQQVDEDD-AIYHVTSPSL-SGHGKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHPP 175 (240)
T ss_pred HhChhh--hhhhHhhccEEEEEEecCCCc-EEEEEecCCC-CCCCCCCeEEEEEEEEeccCCCccEEEEEEEeecCCCCC
Confidence 999987 999999999999999999985 5687777765 467999999999999774 333 7999999999999999
Q ss_pred CCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 356 KSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 356 ~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
++|||||+..++||+|.|.++ +.|+|||+.++|| |++
T Consensus 176 ~kgyVR~~~~~ggw~i~p~~~------~~t~vtY~~~~dP-G~L 212 (240)
T cd08913 176 TPEYTRGETLCSGFCIWEESD------QLTKVSYYNQATP-GVL 212 (240)
T ss_pred CCCcEEeeecccEEEEEECCC------CcEEEEEEEEeCC-ccc
Confidence 999999999999999999875 6899999999999 588
No 7
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=100.00 E-value=4.2e-32 Score=273.86 Aligned_cols=185 Identities=23% Similarity=0.402 Sum_probs=160.7
Q ss_pred ccCCCCEEEEEeC-CEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH-cCCCcccccccCCCCceEEEEeecCceE
Q 004828 230 IEAHEWKCVRTLN-GVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYD 307 (728)
Q Consensus 230 ~a~sgW~l~~~kn-gVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~-d~~~~~R~eWD~~~~~~eVVE~lDe~TD 307 (728)
....||++...++ |++||++..+. .++++|++++|+++|++||+.|+ |.+. |++||+++.++++|+++|++++
T Consensus 21 ~~~~~W~l~~~~~~~i~i~~r~~~~---~~~~~k~~~~i~~~~~~v~~~l~~d~~~--~~~Wd~~~~~~~~i~~~d~~~~ 95 (208)
T cd08868 21 LTDPGWKLEKNTTWGDVVYSRNVPG---VGKVFRLTGVLDCPAEFLYNELVLNVES--LPSWNPTVLECKIIQVIDDNTD 95 (208)
T ss_pred hcCCCceEEEecCCCCEEEEEEcCC---CceEEEEEEEEcCCHHHHHHHHHcCccc--cceecCcccceEEEEEecCCcE
Confidence 4456999999997 99999997643 33789999999999999998665 5554 9999999999999999999999
Q ss_pred EEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEE
Q 004828 308 VVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 387 (728)
Q Consensus 308 IiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~V 387 (728)
|+|+++++. +|+++++||||++|+|++.+ +.|+|+..|+.||.+|+.+|||||+...+||+|+|+++ ++++|.|
T Consensus 96 i~y~~~~~~-~~~~vs~RDfV~~r~~~~~~-~~~~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~----~~~~t~v 169 (208)
T cd08868 96 ISYQVAAEA-GGGLVSPRDFVSLRHWGIRE-NCYLSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPN----NPNKCNF 169 (208)
T ss_pred EEEEEecCc-CCCcccccceEEEEEEEecC-CeEEEEEEeccCCCCCCCCCeEEEeccccEEEEEECCC----CCCceEE
Confidence 999988875 34679999999999999876 57999999999999999999999999999999999985 3578999
Q ss_pred EEEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 388 TQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 388 T~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
+|++++|||||+ |.|. +...+...+++.+++||++++.
T Consensus 170 ~~~~~~Dp~G~i---P~~l--vN~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08868 170 TWLLNTDLKGWL---PQYL--VDQALASVLLDFMKHLRKRIAT 207 (208)
T ss_pred EEEEEECCCCCC---ccee--eehhhHHHHHHHHHHHHHHHhh
Confidence 999999999999 5543 3445556677899999999864
No 8
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=8.9e-33 Score=276.97 Aligned_cols=180 Identities=15% Similarity=0.192 Sum_probs=156.8
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHH-HHHHHHcCCCcccccccCCCCceEEEEeecCceE
Q 004828 229 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADT-VFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (728)
Q Consensus 229 ~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~-VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TD 307 (728)
+....||.....++++.|+.+..+ .+....++|+...|+++|.+ ++++|.+ |+.||.++.+.++||+||+++|
T Consensus 23 ~ek~kgW~~~~~~~~vev~~kk~~-d~~~l~lwk~s~ei~~~p~~vl~rvL~d-----R~~WD~~m~e~~~Ie~Ld~n~d 96 (205)
T cd08907 23 SERFKGWHSAPGPDNTELACKKVG-DGHPLRLWKVSTEVEAPPSVVLQRVLRE-----RHLWDEDLLHSQVIEALENNTE 96 (205)
T ss_pred hhccCCceeecCCCCcEEEEEeCC-CCCceEEEEEEEEecCCCHHHHHHHhhc-----hhhhhHHHHhhhhheeecCCCE
Confidence 344679999999999999877443 23445789999999885555 5555543 9999999999999999999999
Q ss_pred EEEEEeccCcCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 004828 308 VVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (728)
Q Consensus 308 IiY~~~kp~~~P~~vspRDFV~LRswRr~-~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~ 386 (728)
|+||+++. |.++++||||++|+|+.. +.|.|+|+++||+|++.||.+| |||.++.+||+|+|+++ ++|+
T Consensus 97 I~yY~~~~---~~p~p~RDfv~lRsW~~~l~~g~~iI~~~SV~H~~~pp~~g-VRa~~l~sgYlIep~g~------g~s~ 166 (205)
T cd08907 97 VYHYVTDS---MAPHPRRDFVVLRMWRSDLPRGGCLLVSQSVDHDNPQLEAG-VRAVLLTSQYLIEPCGM------GRSR 166 (205)
T ss_pred EEEEEecC---CCCCCCceEEEEEEEccCCCCCCEEEEEecccCCcCCCCCC-eEEEEEeccEEEEECCC------CCeE
Confidence 99999985 356999999999999864 5678999999999999999999 99999999999999875 6899
Q ss_pred EEEEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 387 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 387 VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
||||+++|++||+ |.|+++..++++++ .+.+||+.|..
T Consensus 167 ltyi~rvD~rG~~---P~Wynk~~g~~~a~---~l~~ir~sF~~ 204 (205)
T cd08907 167 LTHICRADLRGRS---PDWYNKVFGHLCAM---EVARIRDSFPT 204 (205)
T ss_pred EEEEEEeCCCCCC---cHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 9999999999999 99999999999995 88999999864
No 9
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=100.00 E-value=2.4e-32 Score=276.21 Aligned_cols=177 Identities=18% Similarity=0.214 Sum_probs=151.6
Q ss_pred CCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEE
Q 004828 233 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 312 (728)
Q Consensus 233 sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~ 312 (728)
.||..+...|++.++-+... ..+.-+++|+++.|+++|++|+..|.+ +|++||.+++++++||+||+||||+|++
T Consensus 27 k~w~~~~~~~~~e~~ykK~~-d~~~lk~~r~~~ei~~~p~~VL~~vl~----~R~~WD~~~~~~~~ie~ld~~tdi~~y~ 101 (205)
T cd08909 27 KGWISCSSSDNTELAYKKVG-DGNPLRLWKVSVEVEAPPSVVLNRVLR----ERHLWDEDFLQWKVVETLDKQTEVYQYV 101 (205)
T ss_pred cCCcccCCcCCeEEEEecCC-CCCceEEEEEEEEeCCCHHHHHHHHHh----hHhhHHhhcceeEEEEEeCCCcEEEEEE
Confidence 35555555555555333221 234457999999999999999888866 3999999999999999999999999999
Q ss_pred eccCcCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE
Q 004828 313 YDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 391 (728)
Q Consensus 313 ~kp~~~P~~vspRDFV~LRswRr~-~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~ 391 (728)
+++++ ++++||||++|+|+++ ++|+|+|+++||+|++|||. |+|||.++.+||+|+|+++ ++|+|||++
T Consensus 102 ~~~~~---P~~~RD~v~~R~w~~~~~~G~~vi~~~Sv~H~~~p~~-g~VRa~~~~~gylI~P~~~------g~trvt~i~ 171 (205)
T cd08909 102 LNCMA---PHPSRDFVVLRSWRTDLPKGACSLVSVSVEHEEAPLL-GGVRAVVLDSQYLIEPCGS------GKSRLTHIC 171 (205)
T ss_pred eecCC---CCCCCEEEEEEEEEEeCCCCcEEEEEecCCCCcCCCC-CcEEEEEEcCcEEEEECCC------CCEEEEEEE
Confidence 99753 5899999999999986 68999999999999999996 9999999999999999986 579999999
Q ss_pred eEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 392 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 392 qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
++|||||+ |.|+.+..+|++++ .+.+||+.|..
T Consensus 172 ~vDpkG~~---P~W~~n~~g~~~~~---~~~~~r~sf~~ 204 (205)
T cd08909 172 RVDLKGHS---PEWYNKGFGHLCAA---EAARIRNSFQP 204 (205)
T ss_pred EecCCCCC---hHHHHHhHHHHHHH---HHHHHHhhccC
Confidence 99999999 88999999999995 88999999863
No 10
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=100.00 E-value=5.2e-32 Score=270.97 Aligned_cols=182 Identities=19% Similarity=0.298 Sum_probs=164.2
Q ss_pred ccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEE
Q 004828 230 IEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (728)
Q Consensus 230 ~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIi 309 (728)
...++|++.++++|+.||++... ...++++|++|+|+..+++|++.|.+... |.+||+++.++++||+||++|.|+
T Consensus 20 ~~~~~Wkl~k~~~~~~v~~k~~~--ef~gkl~R~Egvv~~~~~ev~d~v~~~~~--r~~Wd~~v~~~~Iie~Id~dt~I~ 95 (202)
T cd08902 20 ILEEEWRVAKKSKDVTVWRKPSE--EFGGYLYKAQGVVEDVYNRIVDHIRPGPY--RLDWDSLMTSMDIIEEFEENCCVM 95 (202)
T ss_pred ccccCcEEEEeCCCEEEEEecCC--cCCCceEEEEEEecCCHHHHHHHHhcccc--hhcccchhhheeHhhhhcCCcEEE
Confidence 45789999999999999999663 36789999999999999999999988765 999999999999999999999999
Q ss_pred EEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEE
Q 004828 310 YGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (728)
Q Consensus 310 Y~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~ 389 (728)
|+++... +.+.++|||||.+|++.+.+|| |+.+..|++|+..|| |||||+++++||++.|+++ ++++|.+||
T Consensus 96 ~yvt~~~-~~~iISpRDFVdv~~~~~~~d~-~~s~gvs~~~~~~pp--g~VRgen~p~g~i~~Pl~~----~p~k~~~t~ 167 (202)
T cd08902 96 RYTTAGQ-LLNIISPREFVDFSYTTQYEDG-LLSCGVSIEYEEARP--NFVRGFNHPCGWFCVPLKD----NPSHSLLTG 167 (202)
T ss_pred EEEcccC-CcCccCccceEEEEEEEEeCCC-eEEEEeeecCCCCCC--CeEeecccccEEEEEECCC----CCCceEEEE
Confidence 7665544 3478999999999999999888 578899999998887 9999999999999999997 578999999
Q ss_pred EEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHh
Q 004828 390 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (728)
Q Consensus 390 I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~ 428 (728)
++|+|+|||+ |+ +.+++.|...|+++...||..+
T Consensus 168 ~lq~DLkG~L---Pq--siIdq~~~~~~~~F~~~Lrk~~ 201 (202)
T cd08902 168 YIQTDLRGML---PQ--SAVDTAMASTLVNFYSDLKKAL 201 (202)
T ss_pred EEEecCCCCc---cH--HHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999999 76 7788999999999999999876
No 11
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=100.00 E-value=1.5e-31 Score=268.80 Aligned_cols=178 Identities=18% Similarity=0.232 Sum_probs=156.6
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004828 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (728)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY 310 (728)
...||++...++||+||.+..+. .+..+++|++++|+++|++|++.|++ .|.+||+++.++++|+++|++++|+|
T Consensus 17 ~~~~W~~~~~~~gi~I~~k~~~~-~~~l~~~K~~~~v~a~~~~v~~~l~d----~r~~Wd~~~~~~~vie~id~~~~i~y 91 (197)
T cd08869 17 KSKGWVSVSSSDHVELAFKKVDD-GHPLRLWRASTEVEAPPEEVLQRILR----ERHLWDDDLLQWKVVETLDEDTEVYQ 91 (197)
T ss_pred ccCCceEEecCCcEEEEEEeCCC-CCcEEEEEEEEEeCCCHHHHHHHHHH----HHhccchhhheEEEEEEecCCcEEEE
Confidence 36899999999999999996632 23557899999999999999999986 38999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCeEEEEEEEEE-cCCCeEEEEEeeccCC-CCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEE
Q 004828 311 GTYDPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 388 (728)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr-~~DGsYvIa~~SV~Hp-~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT 388 (728)
+++++.| ++++||||++|+|+. .++|.|+|+++||.|| .+|+ |||||..+++||+|+|+++ ++|+||
T Consensus 92 ~~~~~p~---pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv~~~~~~p~--g~VR~~~~~~g~~i~p~~~------~~t~vt 160 (197)
T cd08869 92 YVTNSMA---PHPTRDYVVLRTWRTDLPKGACVLVETSVEHTEPVPL--GGVRAVVLASRYLIEPCGS------GKSRVT 160 (197)
T ss_pred EEeeCCC---CCCCceEEEEEEEEecCCCCcEEEEEECCcCCCCCCC--CCEEEEEEeeeEEEEECCC------CCeEEE
Confidence 9998754 589999999999987 4678999999999996 5666 9999999999999999875 689999
Q ss_pred EEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 389 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 389 ~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
|++++||+||+ |.|+.+..++++.. .|.+||+.|.+
T Consensus 161 y~~~~Dp~G~i---P~wl~N~~~~~~~~---~~~~l~~~~~~ 196 (197)
T cd08869 161 HICRVDLRGRS---PEWYNKVYGHLCAR---ELLRIRDSFRQ 196 (197)
T ss_pred EEEEECCCCCC---CceeecchHhHHHH---HHHHHHhhccC
Confidence 99999999999 77777777777774 67899999864
No 12
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=100.00 E-value=1.1e-31 Score=272.27 Aligned_cols=188 Identities=20% Similarity=0.273 Sum_probs=161.1
Q ss_pred cccccCCCCEEEEEe-CCEEEEEEecCCCCCcccEEEEEEeecCCHHHHH-HHHHcCCCcccccccCCCCceEEEEeecC
Q 004828 227 GDAIEAHEWKCVRTL-NGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 304 (728)
Q Consensus 227 ~~~~a~sgW~l~~~k-ngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~Vf-dlL~d~~~~~R~eWD~~~~~~eVVE~lDe 304 (728)
..+.+.+||++.... ||++||++..+. + +..+|++++|++|++++| ++|.|.+. |.+||+++.++++|+++|+
T Consensus 19 ~~l~~~~~W~l~~~~~~gi~V~s~~~~~--~-~~~fk~~~~v~~~~~~l~~~ll~D~~~--~~~W~~~~~~~~vi~~~~~ 93 (209)
T cd08906 19 QILAQEENWKFEKNNDNGDTVYTLEVPF--H-GKTFILKAFMQCPAELVYQEVILQPEK--MVLWNKTVSACQVLQRVDD 93 (209)
T ss_pred HHhhcccCCEEEEecCCCCEEEEeccCC--C-CcEEEEEEEEcCCHHHHHHHHHhChhh--ccccCccchhhhheeeccC
Confidence 456678899998764 999999975532 2 388999999999999998 57888876 9999999999999999999
Q ss_pred ceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCc
Q 004828 305 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 384 (728)
Q Consensus 305 ~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~ 384 (728)
+++|+|.+..| |.++++++||||++|+|++.+++ |+++..||.|+.+||++|||||+++++||+|.|.+. ++++
T Consensus 94 ~~~i~Y~v~~p-~~~~pv~~RDfV~~r~~~~~~~~-~i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~----~~~~ 167 (209)
T cd08906 94 NTLVSYDVAAG-AAGGVVSPRDFVNVRRIERRRDR-YVSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSAS----NPSV 167 (209)
T ss_pred CcEEEEEEccc-cccCCCCCCceEEEEEEEecCCc-EEEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCC----CCCc
Confidence 99999954444 44568999999999999998776 999999999999999999999999999999999743 3578
Q ss_pred eEEEEEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 385 CLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 385 c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
|+|||++++|||||+ |.|. +.+.+.-.++..+.+||+.++.
T Consensus 168 t~vt~~~~~Dp~G~l---P~~l--vN~~~~~~~~~~~~~LR~~~~~ 208 (209)
T cd08906 168 CTFIWILNTDLKGRL---PRYL--IHQSLAATMFEFASHLRQRIRD 208 (209)
T ss_pred eEEEEEEecCCCCCC---CHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 4422 4466677788999999998864
No 13
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=99.98 E-value=3.5e-31 Score=266.79 Aligned_cols=184 Identities=20% Similarity=0.246 Sum_probs=157.6
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcC-CCcccccccCCCCceEEEEeecCceEEEE
Q 004828 232 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNL-ERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (728)
Q Consensus 232 ~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~-~~~~R~eWD~~~~~~eVVE~lDe~TDIiY 310 (728)
..+|++.+.++|++||++... ....+++|+++.|++++++|+++|++. .. .|.+||+++.++++|+++|++++|+|
T Consensus 21 ~~~W~~~~~~~~i~v~~~~~~--~~~~~~~k~~~~i~~~~~~v~~~l~d~~~~-~r~~Wd~~~~~~~~le~id~~~~i~~ 97 (206)
T cd08867 21 TDGWKVLKTVKNITVSWKPST--EFTGHLYRAEGIVDALPEKVIDVIIPPCGG-LRLKWDKSLKHYEVLEKISEDLCVGR 97 (206)
T ss_pred cCCcEEEEcCCCcEEEEecCC--CCCCEEEEEEEEEcCCHHHHHHHHHhcCcc-ccccccccccceEEEEEeCCCeEEEE
Confidence 379999999999999998432 233478999999999999999999982 23 49999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEE
Q 004828 311 GTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQM 390 (728)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I 390 (728)
+..... ..+++++||||++++|++.++|.|+++.+||+||.+||.+|||||++..+||+|+|+++ ++++|.+||+
T Consensus 98 ~~~p~~-~~~~vs~RDfV~~~~~~~~~~~~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~----~~~~t~~~~~ 172 (206)
T cd08867 98 TITPSA-AMGLISPRDFVDLVYVKRYEDNQWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKG----SPDKSFLVLY 172 (206)
T ss_pred EEcccc-ccCccCCcceEEEEEEEEeCCCeEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCC----CCCceEEEEE
Confidence 854322 12469999999999999988889999999999999999999999999999999999875 3478999999
Q ss_pred EeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHh
Q 004828 391 LEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYI 428 (728)
Q Consensus 391 ~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~ 428 (728)
+++|||||+ |.|. +...+..+++..+..||+++
T Consensus 173 ~~~DpkG~i---P~~l--vn~~~~~~~~~~~~~lr~~~ 205 (206)
T cd08867 173 VQTDLRGMI---PQSL--VESAMPSNLVNFYTDLVKGV 205 (206)
T ss_pred EEeccCCCC---cHHH--HHhhhhhhHHHHHHHHHHhc
Confidence 999999999 5432 44566667778899999876
No 14
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=99.97 E-value=7.8e-31 Score=265.71 Aligned_cols=188 Identities=21% Similarity=0.252 Sum_probs=158.2
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004828 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (728)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY 310 (728)
..+||++...+||++||++.... ..+..+|++++|+++++++|++|+|.....|.+||.++.++++||+||+++.|+|
T Consensus 20 ~~~~W~~~~~~~~i~v~~~~~~~--~~~~~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~ 97 (208)
T cd08903 20 DESGWKTCRRTNEVAVSWRPSAE--FAGNLYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCR 97 (208)
T ss_pred cccCCEEEEcCCCEEEEeeecCC--CCCcEEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEE
Confidence 46899999999999999985321 2235699999999999999999997633158999999999999999999999988
Q ss_pred EEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEE
Q 004828 311 GTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQM 390 (728)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I 390 (728)
..+ |..+.+.+++||||++|+|++.+||.|++...|+.||.|||++|||||+..++||++.|++. ++++|.|||+
T Consensus 98 ~~~-p~~~~~~vs~RDfV~~~~~~~~~d~~i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~----~~~~t~v~~~ 172 (208)
T cd08903 98 TVT-PSAAMKIISPRDFVDVVLVKRYEDGTISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG----EPDKTQLVSF 172 (208)
T ss_pred Eec-chhcCCCcCCCceEEEEEEEecCCceEEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC----CCCceEEEEE
Confidence 733 21112459999999999999999999999999999999999999999999999999999985 3578999999
Q ss_pred EeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 391 LEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 391 ~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
+++|||||+ |.|. +.+.+...|...+.+||..++.
T Consensus 173 ~~~DpkG~i---P~~l--vn~~~~~~~~~~~~~Lr~~~~~ 207 (208)
T cd08903 173 FQTDLSGYL---PQTV--VDSFFPASMAEFYNNLTKAVKA 207 (208)
T ss_pred EEeccCCCc---CHHH--HHHHhhHHHHHHHHHHHHHHhh
Confidence 999999999 5422 3455566777899999998853
No 15
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=99.97 E-value=7e-31 Score=265.89 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=162.0
Q ss_pred CCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEE
Q 004828 222 FEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELV 299 (728)
Q Consensus 222 ~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVV 299 (728)
+.|++ ++|.+.+||++.++++||+||+++.+. .-..+|++++|++++++|+++|.|... |++||.++.++++|
T Consensus 9 ~~n~~~l~~~~~~~gW~l~~~~~gI~Vy~k~~~~---~~~~~~ge~~v~as~~~v~~ll~D~~~--r~~Wd~~~~~~~vl 83 (205)
T cd08874 9 SVNLSNLDQCQATAGWSYQCLEKDVVIYYKVFNG---TYHGFLGAGVIKAPLATVWKAVKDPRT--RFLYDTMIKTARIH 83 (205)
T ss_pred hhhHHHHHhhhccCCcEEEecCCCEEEEEecCCC---CcceEEEEEEEcCCHHHHHHHHhCcch--hhhhHHhhhheeee
Confidence 45666 789999999999999999999997432 336788999999999999999999987 99999999999999
Q ss_pred EeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCC-CeeeEEEcCeeEEEEecCCCC
Q 004828 300 DSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKS-GYRRTKINPSTWEIRSLNLPM 378 (728)
Q Consensus 300 E~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~-G~VRAei~~sGylI~P~~~~~ 378 (728)
+++|+++.|+|+++...| |..+++||||++++|++.++ .|+|..+||.||.+|+.+ |||||++++|||+|+|+..+
T Consensus 84 ~~~~~d~~i~y~~~~~Pw-p~~~~~RDfV~l~~~~~~~~-~~vi~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~- 160 (205)
T cd08874 84 KTFTEDICLVYLVHETPL-CLLKQPRDFCCLQVEAKEGE-LSVVACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVE- 160 (205)
T ss_pred eecCCCeEEEEEEecCCC-CCCCCCCeEEEEEEEEECCC-cEEEEEEecccccCCCCCCCeEEeeeEeeeEEEEECccC-
Confidence 999999999999887555 55679999999999987655 567999999999999996 99999999999999999432
Q ss_pred CCCCCceEEEEEEeEecC-Cccc-cccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 379 GSNGAKCLVTQMLEIHSS-GWCR-WKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 379 ~~~~~~c~VT~I~qvD~K-Gwl~-w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
+.++|+|||++|+||+ |-+| |+.| .+ +......||.||.|+++
T Consensus 161 --g~~~t~vty~~q~DPggg~iP~~l~N---~~----~~~~p~~~~~~~~~~~~ 205 (205)
T cd08874 161 --GNQYTRVIYIAQVALCGPDVPAQLLS---SL----SKRQPLVIARLALFLEA 205 (205)
T ss_pred --CCCcEEEEEEEEECCCCCCCCHHHHh---HH----HHhccHHHHHHHHHhhC
Confidence 3368999999999999 7883 4422 22 23444578999988864
No 16
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=99.97 E-value=2.4e-29 Score=256.25 Aligned_cols=192 Identities=22% Similarity=0.340 Sum_probs=159.8
Q ss_pred cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCc
Q 004828 227 GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH 305 (728)
Q Consensus 227 ~~~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvV-daspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~ 305 (728)
..+....+|++..+++||+||++..+. +...++|+++++ +++++.+|++|+|.+. |.+||+++.++++|+++|++
T Consensus 17 ~~~~~~~~W~~~~~~~gi~iy~r~~~~--~~~~~~k~~~~~~~~s~e~~~~~l~D~~~--r~~Wd~~~~e~~~ie~~d~~ 92 (222)
T cd08871 17 KLCDSTDGWKLKYNKNNVKVWTKNPEN--SSIKMIKVSAIFPDVPAETLYDVLHDPEY--RKTWDSNMIESFDICQLNPN 92 (222)
T ss_pred HHhcCCCCcEEEEcCCCeEEEEeeCCC--CceEEEEEEEEeCCCCHHHHHHHHHChhh--hhhhhhhhceeEEEEEcCCC
Confidence 344456799999999999999997642 455789999986 7899999999999875 99999999999999999999
Q ss_pred eEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCce
Q 004828 306 YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKC 385 (728)
Q Consensus 306 TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c 385 (728)
++|+|+.++.. +++++||||++|+|+..+ |.|+|+.+|+.||.+|+.+|+|||.+..+||+|+|+++ ++|
T Consensus 93 ~~i~y~~~~~P---~pvs~RDfV~~r~~~~~~-~~~vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~------~~t 162 (222)
T cd08871 93 NDIGYYSAKCP---KPLKNRDFVNLRSWLEFG-GEYIIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTGP------KGC 162 (222)
T ss_pred CEEEEEEeECC---CCCCCCeEEEEEEEEeCC-CEEEEEeccccCCCCCCCCCeEEeEEEccEEEEEECCC------CCE
Confidence 99999998854 459999999999999876 78999999999999999999999999999999999875 579
Q ss_pred EEEEEEeEecCCcc-ccccCCcc-cchhhhHHHHHHHHHHHHHHhhcCC
Q 004828 386 LVTQMLEIHSSGWC-RWKKNSST-KFEKTTHFALLSQVAGLKEYIGANP 432 (728)
Q Consensus 386 ~VT~I~qvD~KGwl-~w~p~~~s-~~~~~i~~~mL~~Va~LRe~~~~~~ 432 (728)
.|||+.++||+||+ .|+.|+.. .....++..|-..+..++||.+.+.
T Consensus 163 ~vt~~~~~Dp~G~IP~~lvN~~~~~~~~~~l~~l~k~~~~y~~~~~~~~ 211 (222)
T cd08871 163 TLTYVTQNDPKGSLPKWVVNKATTKLAPKVMKKLHKAALKYPEWKAKNN 211 (222)
T ss_pred EEEEEEecCCCCCcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999 35433221 1122334444466777777776653
No 17
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=99.96 E-value=2.2e-28 Score=244.04 Aligned_cols=178 Identities=25% Similarity=0.314 Sum_probs=149.7
Q ss_pred cccccCCCCEEEEE-eCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHH-HHHHcCCCcccccccCCCCceEEEEeecC
Q 004828 227 GDAIEAHEWKCVRT-LNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDG 304 (728)
Q Consensus 227 ~~~~a~sgW~l~~~-kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~Vf-dlL~d~~~~~R~eWD~~~~~~eVVE~lDe 304 (728)
..+.+..+|++... ++|+.+|++..+. .+....+|++++|+++++++| +++.|... |++||+++.++++||++++
T Consensus 13 ~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~~v~~~~~~~~~~~~~d~~~--r~~Wd~~~~~~~~ie~~~~ 89 (206)
T smart00234 13 MAAASEPGWVLSSENENGDEVRSILSPG-RSPGEASRAVGVVPMVCADLVEELMDDLRY--RPEWDKNVAKAETLEVIDN 89 (206)
T ss_pred HhhCCCCccEEccccCCcceEEEEccCC-CCceEEEEEEEEEecChHHHHHHHHhcccc--hhhCchhcccEEEEEEECC
Confidence 34556789999997 8999999986532 245789999999999999755 66667765 9999999999999999999
Q ss_pred ceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCc
Q 004828 305 HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAK 384 (728)
Q Consensus 305 ~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~ 384 (728)
+++|+|++++..| +++++||||++|+|+..++|.|+|+.+|+.||.+|+.+|+|||++.++||+|+|+++ +.
T Consensus 90 ~~~i~~~~~~~~~--~p~~~RDfv~~r~~~~~~~~~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~~------~~ 161 (206)
T smart00234 90 GTVIYHYVSKFVA--GPVSPRDFVFVRYWRELVDGSYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLGN------GP 161 (206)
T ss_pred CCeEEEEEEeccc--CcCCCCeEEEEEEEEEcCCCcEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECCC------CC
Confidence 9999999888654 279999999999999988889999999999999999999999999999999999986 45
Q ss_pred eEEEEEEeEecCCccccccCCc-ccchhhhHHHHH
Q 004828 385 CLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALL 418 (728)
Q Consensus 385 c~VT~I~qvD~KGwl~w~p~~~-s~~~~~i~~~mL 418 (728)
|+|||+.|+||+||+ |.|+ +.+.+.....++
T Consensus 162 t~vt~~~~~D~~G~i---P~~lvn~~~~~~~~~~~ 193 (206)
T smart00234 162 SKVTWVSHADLKGWL---PHWLVRSLIKSGLAEFA 193 (206)
T ss_pred eEEEEEEEEecCCCc---cceeehhhhhhhHHHHH
Confidence 999999999999999 4433 444444444433
No 18
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=99.96 E-value=1.1e-28 Score=250.10 Aligned_cols=184 Identities=18% Similarity=0.274 Sum_probs=155.7
Q ss_pred cCCCCEEEE-EeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH-cCCCcccccccCCCCceEEEEeecCceEE
Q 004828 231 EAHEWKCVR-TLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYDV 308 (728)
Q Consensus 231 a~sgW~l~~-~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~-d~~~~~R~eWD~~~~~~eVVE~lDe~TDI 308 (728)
..+||++.. .++|++||++..+. + ++++|++++|+++++++++.|+ +.+. +.+||.++.++++|+++|++++|
T Consensus 23 ~~~~W~~~~~~~~gi~v~s~~~~~--~-~k~~k~e~~i~~~~~~l~~~l~~d~e~--~~~W~~~~~~~~vl~~id~~~~i 97 (209)
T cd08905 23 DQEGWKTEIVAENGDKVLSKVVPD--I-GKVFRLEVVVDQPLDNLYSELVDRMEQ--MGEWNPNVKEVKILQRIGKDTLI 97 (209)
T ss_pred cccCCEEEEecCCCCEEEEEEcCC--C-CcEEEEEEEecCCHHHHHHHHHhchhh--hceecccchHHHHHhhcCCCceE
Confidence 457999995 58999999986643 2 2899999999999999996555 5554 99999999999999999999999
Q ss_pred EEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEE
Q 004828 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 388 (728)
Q Consensus 309 iY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT 388 (728)
+|+...| |..+++++||||++|+|++.+ +.++++..|+.||.+||.+|||||+...+||+|+|+++ ++++|+||
T Consensus 98 ~y~~~~p-~p~~~vs~RD~V~~~~~~~~~-~~~~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~----~~~~t~v~ 171 (209)
T cd08905 98 THEVAAE-TAGNVVGPRDFVSVRCAKRRG-STCVLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAG----DPSKTKLT 171 (209)
T ss_pred EEEEecc-CCCCccCccceEEEEEEEEcC-CcEEEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCC----CCCceEEE
Confidence 9985554 322459999999999999875 46788899999999999999999999999999999975 35789999
Q ss_pred EEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 389 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 389 ~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
|++++|||||+ |.|. +.+.+.-.++..+.+||+.+.+
T Consensus 172 ~~~~~DpkG~i---P~~l--vN~~~~~~~~~~~~~Lr~~~~~ 208 (209)
T cd08905 172 WLLSIDLKGWL---PKSI--INQVLSQTQVDFANHLRQRMAS 208 (209)
T ss_pred EEEeecCCCCC---CHHH--HHHHhHHhHHHHHHHHHHHHhc
Confidence 99999999999 4422 4455666778899999998874
No 19
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=99.96 E-value=5.6e-28 Score=249.49 Aligned_cols=189 Identities=13% Similarity=0.202 Sum_probs=149.0
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004828 232 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (728)
Q Consensus 232 ~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVd-aspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY 310 (728)
..+|+++.+++||+||+++.+..+.....+||+++|+ +++++++++|+|.+. |.+||.++.++++||+++++++|+|
T Consensus 25 ~~~W~l~~~~~gikVy~r~~~~sg~~~~~~Ka~~~v~~vt~~~~~~~l~D~~~--r~~Wd~~~~~~~vie~l~~~~~I~Y 102 (235)
T cd08872 25 ADGWQLFAEEGEMKVYRREVEEDGVVLDPLKATHAVKGVTGHEVCHYFFDPDV--RMDWETTLENFHVVETLSQDTLIFH 102 (235)
T ss_pred CCCCEEEEeCCceEEEEEECCCCCceeeeEEEEEEECCCCHHHHHHHHhChhh--HHHHHhhhheeEEEEecCCCCEEEE
Confidence 4589999999999999997764322223699999998 899999999999986 9999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCeEEEEEEEEEcCC-------CeEEEEEeeccCCCCCCCCCeeeEEE---cCee-EEEEecCCCCC
Q 004828 311 GTYDPKYLTRWQSKRDFVFSRQWFRGQD-------GTYTILQFPAVHKKRPPKSGYRRTKI---NPST-WEIRSLNLPMG 379 (728)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr~~D-------GsYvIa~~SV~Hp~~Pp~~G~VRAei---~~sG-ylI~P~~~~~~ 379 (728)
+.++.. +++++||||++++|++.++ +.|+|++.|+.||.+|+++||||+.. +.++ |++.|.+.-..
T Consensus 103 ~~~k~P---wPvs~RD~V~~~~~~~~~d~~~~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~ 179 (235)
T cd08872 103 QTHKRV---WPAAQRDALFVSHIRKIPALEEPNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEI 179 (235)
T ss_pred EEccCC---CCCCCcEEEEEEEEEecCccccccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccc
Confidence 999864 4699999999999998654 67999999999999999999999996 3444 44443221000
Q ss_pred C-CCCceEEEEEEeEecCCcc-ccccCCcccchhhhHHHHHHHHHHHHHHhhcC
Q 004828 380 S-NGAKCLVTQMLEIHSSGWC-RWKKNSSTKFEKTTHFALLSQVAGLKEYIGAN 431 (728)
Q Consensus 380 ~-~~~~c~VT~I~qvD~KGwl-~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~ 431 (728)
+ +...|+|||++++||+||+ .|+. +.+.+..... .+..|-.|+..+
T Consensus 180 t~~~~~~~ity~~~~dPgG~iP~wvv---n~~~k~~~P~---~l~~~~~~~~~~ 227 (235)
T cd08872 180 TRDNILCKITYVANVNPGGWAPASVL---RAVYKREYPK---FLKRFTSYVQEK 227 (235)
T ss_pred cCCCCeEEEEEEEEeCCCCCccHHHH---HHHHHhhchH---HHHHHHHHHHHh
Confidence 0 1358999999999999999 3553 3444555554 455666666544
No 20
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=99.95 E-value=1.6e-27 Score=241.21 Aligned_cols=176 Identities=17% Similarity=0.190 Sum_probs=151.3
Q ss_pred CCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEE
Q 004828 233 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 312 (728)
Q Consensus 233 sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~ 312 (728)
.||..+...|++.++.+..+ .++.-+++|+++.|+++|++|+.+|++. |.+||.++.++++|+++|++++|+|++
T Consensus 27 k~w~~~~~~~~~el~~~k~~-~gs~l~~~r~~~~i~a~~~~vl~~lld~----~~~Wd~~~~e~~vIe~ld~~~~I~Yy~ 101 (204)
T cd08908 27 KGWVSYSTSEQAELSYKKVS-EGPPLRLWRTTIEVPAAPEEILKRLLKE----QHLWDVDLLDSKVIEILDSQTEIYQYV 101 (204)
T ss_pred cCCcccCCCCcEEEEEeccC-CCCCcEEEEEEEEeCCCHHHHHHHHHhh----HHHHHHHhhheEeeEecCCCceEEEEE
Confidence 35555555666666433222 3455689999999999999999999774 899999999999999999999999999
Q ss_pred eccCcCCCCCCCCeEEEEEEEEE-cCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE
Q 004828 313 YDPKYLTRWQSKRDFVFSRQWFR-GQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 391 (728)
Q Consensus 313 ~kp~~~P~~vspRDFV~LRswRr-~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~ 391 (728)
+++.| ++++||||++|+|+. .++|.|+|.+.||.|+.+|+. +|||....+||+|+|+++ ++|+|||++
T Consensus 102 ~~~Pw---P~~~RD~V~~Rs~~~~~~~g~~~I~~~Sv~h~~~P~~--~VR~~~~~~~w~i~P~g~------g~t~vtyi~ 170 (204)
T cd08908 102 QNSMA---PHPARDYVVLRTWRTNLPKGACALLATSVDHDRAPVA--GVRVNVLLSRYLIEPCGS------GKSKLTYMC 170 (204)
T ss_pred ccCCC---CCCCcEEEEEEEEEEeCCCCeEEEEEeecCcccCCcC--ceEEEEEeeEEEEEECCC------CcEEEEEEE
Confidence 98754 599999999999986 578899999999999999976 699999999999999875 689999999
Q ss_pred eEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 392 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 392 qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
++||+|++ |.|+.+..+|+|++ .+.+||+.|..
T Consensus 171 ~~DPgG~i---P~W~~N~~g~~~~~---~~~~~r~sf~~ 203 (204)
T cd08908 171 RIDLRGHM---PEWYTKSFGHLCAA---EVVKIRDSFSN 203 (204)
T ss_pred EeCCCCCC---cHHHHhhHHHHHHH---HHHHHHhhccC
Confidence 99999999 88888899999995 88999999853
No 21
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=99.95 E-value=6.4e-27 Score=232.85 Aligned_cols=188 Identities=27% Similarity=0.441 Sum_probs=152.4
Q ss_pred cccCCCCEEEEEeCCEEEEE-EecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceE
Q 004828 229 AIEAHEWKCVRTLNGVRIFE-DVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (728)
Q Consensus 229 ~~a~sgW~l~~~kngVrVy~-~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TD 307 (728)
.....||++...+++..++. +..+........+|+.++|+++++++|..|++.. . +||+.+.++++||+++++++
T Consensus 15 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~~~~~---~-~Wd~~~~~~~~le~~~~~~~ 90 (206)
T PF01852_consen 15 QEDEDGWKLYKDKKNGDVYYKKVSPSDSCPIKMFKAEGVVPASPEQVVEDLLDDR---E-QWDKMCVEAEVLEQIDEDTD 90 (206)
T ss_dssp HHTCTTCEEEEEETTTCEEEEEEECSSSTSCEEEEEEEEESSCHHHHHHHHHCGG---G-HHSTTEEEEEEEEEEETTEE
T ss_pred hcCCCCCeEeEccCCCeEEEEEeCccccccceEEEEEEEEcCChHHHHHHHHhhH---h-hcccchhhheeeeecCCCCe
Confidence 44678999999555444433 3332222366889999999999999999998742 3 99999999999999999999
Q ss_pred EEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCC-CCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 004828 308 VVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPP-KSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (728)
Q Consensus 308 IiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp-~~G~VRAei~~sGylI~P~~~~~~~~~~~c~ 386 (728)
|+|+.+++.| |+++++||||++|+|++..+|.|+|+.+||+||.+|+ .+|+|||++..+||+|+|+++ +.|+
T Consensus 91 i~~~~~~~~~-~~p~~~RDfv~~~~~~~~~~~~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~~------~~~~ 163 (206)
T PF01852_consen 91 IVYFVMKSPW-PGPVSPRDFVFLRSWRKDEDGTYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLGD------GRTR 163 (206)
T ss_dssp EEEEEEE-CT-TTTSSEEEEEEEEEEEECTTSEEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEETT------CEEE
T ss_pred EEEEEecccC-CCCCCCcEEEEEEEEEEeccceEEEEEeeeccccccccccCcceeeeeeEeEEEEEccC------CCce
Confidence 9999998765 5579999999999999988899999999999999999 999999999999999999986 4599
Q ss_pred EEEEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhcCC
Q 004828 387 VTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 432 (728)
Q Consensus 387 VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~~ 432 (728)
|||+.|+||+||+ |.|+. ...+..++...+..||+.++...
T Consensus 164 vt~~~~~D~~G~i---P~~~~--n~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
T PF01852_consen 164 VTYVSQVDPKGWI---PSWLV--NMVVKSQPPNFLKNLRKALKKQK 204 (206)
T ss_dssp EEEEEEEESSSSS---HHHHH--HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred EEEEEEECCCCCC---hHHHH--HHHHHHhHHHHHHHHHHHHHHhc
Confidence 9999999999999 43221 22233345567788888887653
No 22
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=99.95 E-value=1.7e-26 Score=233.77 Aligned_cols=180 Identities=17% Similarity=0.166 Sum_probs=150.5
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecC-ceEE
Q 004828 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HYDV 308 (728)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvV-daspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe-~TDI 308 (728)
+.++|+++..++||+||++..+. +....+|+++++ ++|+++++++|+|.+. |.+||.++.++++|++.++ +++|
T Consensus 19 ~~~~W~l~~~~~~i~Vy~r~~~~--s~~~~~k~~~~~~d~s~~~~~~~~~D~~~--r~~Wd~~~~~~~~le~~~~~~~~i 94 (207)
T cd08911 19 EPDGWEPFIEKKDMLVWRREHPG--TGLYEYKVYGSFDDVTARDFLNVQLDLEY--RKKWDATAVELEVVDEDPETGSEI 94 (207)
T ss_pred cCCCcEEEEEcCceEEEEeccCC--CCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHhhheeEEEEEccCCCCCEE
Confidence 56789999999999999997753 445689998866 9999999999999976 9999999999999999755 8999
Q ss_pred EEEEeccCcCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEE
Q 004828 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 387 (728)
Q Consensus 309 iY~~~kp~~~P~~vspRDFV~LRswRr~-~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~V 387 (728)
+|+.++. |+++++||||+.|+|+.+ ++|.|+|+++||.||.+|+.+|+||+....+||+|+|.++. +.+.|.+
T Consensus 95 ~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~---~~~~~~~ 168 (207)
T cd08911 95 IYWEMQW---PKPFANRDYVYVRRYIIDEENKLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSF---DEPGFEF 168 (207)
T ss_pred EEEEEEC---CCCCCCccEEEEEEEEEcCCCCEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCC---CCCCeEE
Confidence 9998885 557999999999998876 45688999999999999999999999999999999998631 2356999
Q ss_pred EEEEeEecCCccc-cccCCcccchhhhHHHHHHHHHHHHH
Q 004828 388 TQMLEIHSSGWCR-WKKNSSTKFEKTTHFALLSQVAGLKE 426 (728)
Q Consensus 388 T~I~qvD~KGwl~-w~p~~~s~~~~~i~~~mL~~Va~LRe 426 (728)
++..+.||+||+| |++ +.+.+..+.. .+.+|++
T Consensus 169 ~~~~~~dPgG~IP~~lv---N~~~~~~~~~---~l~~l~~ 202 (207)
T cd08911 169 VLTYFDNPGVNIPSYIT---SWVAMSGMPD---FLERLRN 202 (207)
T ss_pred EEEEEeCCCCccCHHHH---HHHHHhhccH---HHHHHHH
Confidence 9999999999992 442 4445555554 4444544
No 23
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=99.94 E-value=5.1e-25 Score=214.32 Aligned_cols=154 Identities=34% Similarity=0.592 Sum_probs=142.4
Q ss_pred CCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEE
Q 004828 233 HEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGT 312 (728)
Q Consensus 233 sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~ 312 (728)
.+|++..+++|++||.+..+. +....+|+++.|++++++|+++|.+.+. |++||+.+.++++|+++++++.|+|+.
T Consensus 15 ~~W~~~~~~~~v~vy~~~~~~--~~~~~~k~~~~i~~~~~~v~~~l~d~~~--~~~w~~~~~~~~vl~~~~~~~~i~~~~ 90 (193)
T cd00177 15 EGWKLVKEKDGVKIYTKPYED--SGLKLLKAEGVIPASPEQVFELLMDIDL--RKKWDKNFEEFEVIEEIDEHTDIIYYK 90 (193)
T ss_pred CCeEEEEECCcEEEEEecCCC--CCceeEEEEEEECCCHHHHHHHHhCCch--hhchhhcceEEEEEEEeCCCeEEEEEE
Confidence 589999999999999997753 3457899999999999999999999765 999999999999999999999999999
Q ss_pred eccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEe
Q 004828 313 YDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLE 392 (728)
Q Consensus 313 ~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~q 392 (728)
++..| ++++||||+++++...++|.++++..|+.|+.+|+.+++|||.+..+||+|+|+++ +.|++||+++
T Consensus 91 ~~~p~---p~~~Rdfv~~~~~~~~~~~~~~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~~------~~~~vt~~~~ 161 (193)
T cd00177 91 TKPPW---PVSPRDFVYLRRRRKLDDGTYVIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLDP------GKTKVTYVLQ 161 (193)
T ss_pred eeCCC---ccCCccEEEEEEEEEcCCCeEEEEEeecCCCCCCCCCCcEEEEEEccEEEEEECCC------CCEEEEEEEe
Confidence 98754 49999999999999888789999999999999999999999999999999999954 6899999999
Q ss_pred EecCCcc
Q 004828 393 IHSSGWC 399 (728)
Q Consensus 393 vD~KGwl 399 (728)
+|++||+
T Consensus 162 ~D~~g~i 168 (193)
T cd00177 162 VDPKGSI 168 (193)
T ss_pred eCCCCCc
Confidence 9999999
No 24
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=99.93 E-value=2e-25 Score=226.22 Aligned_cols=176 Identities=20% Similarity=0.249 Sum_probs=145.7
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEE
Q 004828 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (728)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVd-aspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIi 309 (728)
+.++|+++.+++||+||++..+ .+....+|++++++ +++++++++|+|.+. |.+||.++.+ +++..+++++|+
T Consensus 23 ~~~~W~l~~~~~~i~Vy~r~~~--~s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~--~~~~~~~~~~i~ 96 (207)
T cd08910 23 DGAAWELLVESSGISIYRLLDE--QSGLYEYKVFGVLEDCSPSLLADVYMDLEY--RKQWDQYVKE--LYEKECDGETVI 96 (207)
T ss_pred CCCCeEEEEecCCeEEEEeccC--CCCcEEEEEEEEEcCCCHHHHHHHHhCHHH--HHHHHHHHHh--heeecCCCCEEE
Confidence 4578999999999999999664 34456899999998 699999999999886 9999999987 788889999999
Q ss_pred EEEeccCcCCCCCCCCeEEEEEEEEEc-CCC--eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 004828 310 YGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG--TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (728)
Q Consensus 310 Y~~~kp~~~P~~vspRDFV~LRswRr~-~DG--sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~ 386 (728)
|+.++. |+++++||||++|+++.. .+| .++|+++|+.||.+|+.+|+||+....++|+|+|.++ +.|+
T Consensus 97 y~~~k~---PwPvs~RD~V~~r~~~~~~~~~~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~~------~~t~ 167 (207)
T cd08910 97 YWEVKY---PFPLSNRDYVYIRQRRDLDVEGRKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDGK------KGSK 167 (207)
T ss_pred EEEEEc---CCCCCCceEEEEEEeccccCCCCeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCCC------CceE
Confidence 999985 456999999999988753 233 5788999999999999999999999999999999764 5799
Q ss_pred EEEEEeEecCCccc-cccCCcccchhhhHHHHHHHHHHHHHH
Q 004828 387 VTQMLEIHSSGWCR-WKKNSSTKFEKTTHFALLSQVAGLKEY 427 (728)
Q Consensus 387 VT~I~qvD~KGwl~-w~p~~~s~~~~~i~~~mL~~Va~LRe~ 427 (728)
++|+.+.||+|++| |+. +.+.+..+. ..+.+||+-
T Consensus 168 i~~~~~~DPgG~IP~wlv---N~~~~~~~~---~~l~~l~ka 203 (207)
T cd08910 168 VFMYYFDNPGGMIPSWLI---NWAAKNGVP---NFLKDMQKA 203 (207)
T ss_pred EEEEEEeCCCCcchHHHH---HHHHHHhhH---HHHHHHHHH
Confidence 99999999999992 442 344444444 445555553
No 25
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.93 E-value=1.3e-24 Score=215.67 Aligned_cols=180 Identities=21% Similarity=0.300 Sum_probs=150.9
Q ss_pred cccc-CCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCce
Q 004828 228 DAIE-AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 306 (728)
Q Consensus 228 ~~~a-~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~T 306 (728)
.+++ +.+|+++.+++|++||+++.+. +....+|++++|+++|++||+++.|.+. |++||+.+.++++||+++++.
T Consensus 11 ~~~~~~~~W~~~~~~~~v~v~~~~~~~--~~~~~~k~~~~i~~s~e~v~~vi~d~e~--~~~w~~~~~~~~vie~~~~~~ 86 (195)
T cd08876 11 AALAPDGDWQLVKDKDGIKVYTRDVEG--SPLKEFKAVAEVDASIEAFLALLRDTES--YPQWMPNCKESRVLKRTDDNE 86 (195)
T ss_pred cccCCCCCCEEEecCCCeEEEEEECCC--CCeEEEEEEEEEeCCHHHHHHHHhhhHh--HHHHHhhcceEEEeecCCCCc
Confidence 3444 4569999999999999997643 3347899999999999999999999987 999999999999999999989
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEEEcC-CCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCce
Q 004828 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ-DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKC 385 (728)
Q Consensus 307 DIiY~~~kp~~~P~~vspRDFV~LRswRr~~-DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c 385 (728)
+++|..++.. +++++||||+.+.++... +|.++|...|+.|+ +|+.++|||+....+||.|+|+++ ++|
T Consensus 87 ~i~~~~~~~p---~pvs~Rdfv~~~~~~~~~~~~~~~i~~~s~~~~-~P~~~~~vR~~~~~~~~~i~~~~~------~~t 156 (195)
T cd08876 87 RSVYTVIDLP---WPVKDRDMVLRSTTEQDADDGSVTITLEAAPEA-LPEQKGYVRIKTVEGQWTFTPLGN------GKT 156 (195)
T ss_pred EEEEEEEecc---cccCCceEEEEEEEEEcCCCCEEEEEeecCCcc-CCCCCCeEEceeceeeEEEEECCC------CeE
Confidence 9999988854 358999999998887754 78999999999998 899999999999999999999975 679
Q ss_pred EEEEEEeEecCCccccccCCc-ccchhhhHHHHHHHHHHHHHH
Q 004828 386 LVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEY 427 (728)
Q Consensus 386 ~VT~I~qvD~KGwl~w~p~~~-s~~~~~i~~~mL~~Va~LRe~ 427 (728)
+|||++++|++||+ |.+. +.+.+..+. ..+++||+.
T Consensus 157 ~vt~~~~~dp~g~i---P~~lv~~~~~~~~~---~~l~~l~~~ 193 (195)
T cd08876 157 RVTYQAYADPGGSI---PGWLANAFAKDAPY---NTLENLRKQ 193 (195)
T ss_pred EEEEEEEeCCCCCC---CHHHHHHHHHHHHH---HHHHHHHHh
Confidence 99999999999999 5433 333333333 456666654
No 26
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=99.92 E-value=5.8e-24 Score=215.30 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=149.7
Q ss_pred CCCEEEEEeCC----EEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecC-ce
Q 004828 233 HEWKCVRTLNG----VRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG-HY 306 (728)
Q Consensus 233 sgW~l~~~kng----VrVy~~~~~~~~s~~~~~Ka~gvV-daspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe-~T 306 (728)
.+|+++..++| ++||++..+. +....+|+++++ ++|+++++++|+|.+. |.+||.++.++++|+..++ ++
T Consensus 22 ~~W~~~~~k~~~~~~i~vy~r~~~~--s~~~~~k~~~~~~~~s~~~~~~~l~D~~~--r~~Wd~~~~~~~~le~~~~~~~ 97 (209)
T cd08870 22 QAWQQVMDKSTPDMSYQAWRRKPKG--TGLYEYLVRGVFEDCTPELLRDFYWDDEY--RKKWDETVIEHETLEEDEKSGT 97 (209)
T ss_pred CcceEhhhccCCCceEEEEecccCC--CCceEEEEEEEEcCCCHHHHHHHHcChhh--HhhhhhheeeEEEEEecCCCCc
Confidence 68999999999 9999997643 445789999999 5699999999999876 9999999999999999655 58
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 004828 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (728)
Q Consensus 307 DIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~ 386 (728)
+|+|+.++. |+++++||||+.|.++...+|.++|+.+|+.||.+|+. |+||+....++|+|+|++. ++++|.
T Consensus 98 ~i~y~~~~~---P~P~s~RD~V~~r~~~~~~~~~~~i~~~sv~~~~~P~~-~~vRv~~~~~~~~i~p~~~----~~~~t~ 169 (209)
T cd08870 98 EIVRWVKKF---PFPLSDREYVIARRLWESDDRSYVCVTKGVPYPSVPRS-GRKRVDDYESSLVIRAVKG----DGQGSA 169 (209)
T ss_pred EEEEEEEEC---CCcCCCceEEEEEEEEEcCCCEEEEEEeCCcCCCCCCC-CcEEEEEEEeEEEEEEecC----CCCceE
Confidence 999999885 55699999999999888778899999999999999999 9999999999999999952 236799
Q ss_pred EEEEEeEecCCccccccCCc-ccchhhhHHHHHHHHHHHHHHh
Q 004828 387 VTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYI 428 (728)
Q Consensus 387 VT~I~qvD~KGwl~w~p~~~-s~~~~~i~~~mL~~Va~LRe~~ 428 (728)
+++..+.||+|++ |.|. +.+.+..+. ..+.+||+-+
T Consensus 170 ~~~~~~~dp~G~I---P~wlvN~~~~~~~~---~~l~~l~~a~ 206 (209)
T cd08870 170 CEVTYFHNPDGGI---PRELAKLAVKRGMP---GFLKKLENAL 206 (209)
T ss_pred EEEEEEECCCCCC---CHHHHHHHHHhhhH---HHHHHHHHHH
Confidence 9999999999999 4433 333333333 5666776654
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.88 E-value=5.5e-22 Score=201.30 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=151.5
Q ss_pred cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCce
Q 004828 227 GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 306 (728)
Q Consensus 227 ~~~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~T 306 (728)
+++.+..+|++..+++|++||.+..+. +....+|++|+|+++++.++.+|.+.+. +++|++.+.++++|++++.++
T Consensus 16 ~~l~~~~~W~~~~~~~~i~v~~r~~~~--~~~~~~k~e~~i~~~~~~~~~vl~d~~~--~~~W~p~~~~~~~l~~~~~~~ 91 (215)
T cd08877 16 KDLDESDGWTLQKESEGIRVYYKFEPD--GSLLSLRMEGEIDGPLFNLLALLNEVEL--YKTWVPFCIRSKKVKQLGRAD 91 (215)
T ss_pred hcccCCCCcEEeccCCCeEEEEEeCCC--CCEEEEEEEEEecCChhHeEEEEehhhh--HhhhcccceeeEEEeecCCce
Confidence 456668899999999999999886643 3358899999999999999999999876 999999999999999999999
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEE-Ec-CCCeEEEEEeeccCCC---------CCCCC-CeeeEEEcCeeEEEEec
Q 004828 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWF-RG-QDGTYTILQFPAVHKK---------RPPKS-GYRRTKINPSTWEIRSL 374 (728)
Q Consensus 307 DIiY~~~kp~~~P~~vspRDFV~LRswR-r~-~DGsYvIa~~SV~Hp~---------~Pp~~-G~VRAei~~sGylI~P~ 374 (728)
.|+|+.++. |+++++||+|+..... .. ++|.++|+..|+.|+. +|+.+ |+||++...+||+|+|+
T Consensus 92 ~v~y~~~~~---PwPv~~RD~v~~~~~~~~~~~~~~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~ 168 (215)
T cd08877 92 KVCYLRVDL---PWPLSNREAVFRGFGVDRLEENGQIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPI 168 (215)
T ss_pred EEEEEEEeC---ceEecceEEEEEEEEEeeeccCCCEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEc
Confidence 999998885 5569999999853322 23 7899999999999876 69998 99999999999999999
Q ss_pred CCCCCCCCCceEEEEEEeEecCCc-cccccCCc-ccchhhhHHHHHHHHHH
Q 004828 375 NLPMGSNGAKCLVTQMLEIHSSGW-CRWKKNSS-TKFEKTTHFALLSQVAG 423 (728)
Q Consensus 375 ~~~~~~~~~~c~VT~I~qvD~KGw-l~w~p~~~-s~~~~~i~~~mL~~Va~ 423 (728)
++ ++|.++++.++||+|+ + |.|. +.+.+.++..++..+.+
T Consensus 169 ~~------~~t~v~~~~~~DP~g~~I---P~~liN~~~k~~~~~~~~~l~k 210 (215)
T cd08877 169 SP------TKCYLRFVANVDPKMSLV---PKSLLNFVARKFAGLLFEKIQK 210 (215)
T ss_pred CC------CCeEEEEEEEcCCCcccC---CHHHHHHHHHHHHHHHHHHHHH
Confidence 86 6899999999999999 8 4333 45566666655544433
No 28
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=99.85 E-value=1.3e-20 Score=190.18 Aligned_cols=168 Identities=22% Similarity=0.349 Sum_probs=144.7
Q ss_pred cccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHcCCCcccccccCCCCceEEEEeec-Cce
Q 004828 229 AIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYD-GHY 306 (728)
Q Consensus 229 ~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvV-daspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lD-e~T 306 (728)
+-+..+|+++..++++.||....+. .+ ...+|+.++. |+||+.++++++|.+. |++||.++.+.++||... -++
T Consensus 25 ~~~~~~We~~~~k~~~~i~~q~~~~-~g-~~~Yk~~~vfeDvtp~~~~Dv~~D~eY--RkkWD~~vi~~e~ie~d~~tg~ 100 (219)
T KOG2761|consen 25 CDAGQGWELVMDKSTPSIWRQRRPK-TG-LYEYKSRTVFEDVTPEIVRDVQWDDEY--RKKWDDMVIELETIEEDPVTGT 100 (219)
T ss_pred cCcccchhhhcccCCceEEEEcccC-CC-CEEEEEEEEEcCCCHHHHHHHHhhhHH--HHHHHHHhhhheeeeecCCCCc
Confidence 6678899999999999999843322 22 5789999976 6899999999999987 999999999999999996 677
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEE-ecCCCCCCCCCce
Q 004828 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIR-SLNLPMGSNGAKC 385 (728)
Q Consensus 307 DIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~-P~~~~~~~~~~~c 385 (728)
+|+|++.+ +|.++++||||++|.|...++-.|+|+++||.||+.||.+++||+.+.-+||+|+ +... .+++.|
T Consensus 101 ~vv~w~~k---fP~p~~~RdYV~~Rr~~~~~~k~~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~---~~~~~~ 174 (219)
T KOG2761|consen 101 EVVYWVKK---FPFPMSNRDYVYVRRWWESDEKDYYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRS---GDEQGC 174 (219)
T ss_pred eEEEEEEe---CCcccCCccEEEEEEEEecCCceEEEEEecccCCCcCCcCCcEEEEEEEEEEEEEccccc---CCCCcc
Confidence 99999988 5778999999999999887656799999999999999999999999999999999 5543 246789
Q ss_pred EEEEEEeEecCCccc-cccCCc
Q 004828 386 LVTQMLEIHSSGWCR-WKKNSS 406 (728)
Q Consensus 386 ~VT~I~qvD~KGwl~-w~p~~~ 406 (728)
.+.++...|++|-++ |+.+|.
T Consensus 175 ~~~~~~~~~p~~~iP~~~v~~~ 196 (219)
T KOG2761|consen 175 ACEYLYFHNPGGGIPKWVVKLA 196 (219)
T ss_pred EEEEEEEECCCCCCcHHHHHHH
Confidence 999999999999994 454443
No 29
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.58 E-value=2.5e-15 Score=164.26 Aligned_cols=165 Identities=16% Similarity=0.313 Sum_probs=140.3
Q ss_pred ccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEE
Q 004828 230 IEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDV 308 (728)
Q Consensus 230 ~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvV-daspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDI 308 (728)
.....|+++...+.+++|+++.+..+-..-.+||...| -+++.++++++++.+. |.+|+.+++.+.|||+|.+++-|
T Consensus 400 g~d~nwqlFaeegemkmy~re~eeng~~~Dplka~hav~gvta~e~chyf~~~~~--rndwettle~~~vve~is~d~~~ 477 (611)
T KOG1739|consen 400 GGDANWQLFAEEGEMKMYRREVEENGIVLDPLKATHAVKGVTAHEVCHYFWNVDV--RNDWETTLENFHVVETISDDAII 477 (611)
T ss_pred cccchhhhhcccCCccccceeeccCCcccCccccchhhcchhHHHHHHHHcChhh--hcchhhhhhhceeeeeecCCeEE
Confidence 34556999999999999999877655555567887755 4699999999999987 99999999999999999999999
Q ss_pred EEEEeccCcCCCCCCCCeEEEEEEEEEc----CC--CeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCC-
Q 004828 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRG----QD--GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSN- 381 (728)
Q Consensus 309 iY~~~kp~~~P~~vspRDFV~LRswRr~----~D--GsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~- 381 (728)
+|++.|..| +.++||-.++.+.|+- ++ +.|++|++||+|.+.|-...+||+.+..+.-+-.-++++.++.
T Consensus 478 ~~qthkrvw---pasqrd~lf~shirki~~~~e~gad~wivcn~s~~~a~~pl~n~cvr~~ltv~micqt~v~~p~~~q~ 554 (611)
T KOG1739|consen 478 IYQTHKRVW---PASQRDVLFLSHIRKIPALTENGADTWIVCNFSVDHASAPLNNRCVRAKLTVAMICQTLVSPPEGNQE 554 (611)
T ss_pred EEecccccC---CCCcchhHHHHHHhhcccccCCCCceEEEecCccccccCccCCceEEEeeeeeeeeecccCCcccCCc
Confidence 999999887 4899999999999983 23 4799999999999999999999999988777766665543322
Q ss_pred ----CCceEEEEEEeEecCCcc
Q 004828 382 ----GAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 382 ----~~~c~VT~I~qvD~KGwl 399 (728)
.-.|++||+.+++|+||.
T Consensus 555 l~rdd~~ckityvs~vnpggwa 576 (611)
T KOG1739|consen 555 LSRDDILCKITYVSNVNPGGWA 576 (611)
T ss_pred ccccceeEEEEEEeeeCCCCcc
Confidence 247999999999999999
No 30
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=99.53 E-value=2.4e-13 Score=139.97 Aligned_cols=134 Identities=15% Similarity=0.212 Sum_probs=115.0
Q ss_pred CcccEEEEEEeecCCHHHHHHHHHcCCCccccc-ccCCCCceEEEEeecCc--------eEEEEEEeccCcCCCCCCCCe
Q 004828 256 GRGVLVKAVGVIDASADTVFEVVLNLERHQRYE-WDMLTGDLELVDSYDGH--------YDVVYGTYDPKYLTRWQSKRD 326 (728)
Q Consensus 256 s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~e-WD~~~~~~eVVE~lDe~--------TDIiY~~~kp~~~P~~vspRD 326 (728)
..+-+-|++|+|...|..+.+.|+|... ..+ .+..+...++++.|+.. ..++|..++... .++++||
T Consensus 57 ~~~eASR~~glV~m~~~~lVe~lmD~~k--W~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pS--pLVp~Re 132 (229)
T cd08875 57 FTTEASRACGLVMMNAIKLVEILMDVNK--WSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPS--PLVPTRE 132 (229)
T ss_pred CeEEEEeeeEEEecCHHHHHHHHhChhh--hhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCc--ccccCCe
Confidence 4445779999999999999999999543 222 44588999999999654 678888877542 4899999
Q ss_pred EEEEEEEEEcCCCeEEEEEeeccCC-CCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 327 FVFSRQWFRGQDGTYTILQFPAVHK-KRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 327 FV~LRswRr~~DGsYvIa~~SV~Hp-~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
|++|||.++.+||+|+|+.+|+++. ..|+.++++|++.++|||+|+|+++ +.|+||||-|+|..-|.
T Consensus 133 ~~fLRyc~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~n------G~SkVtwVeH~e~d~~~ 200 (229)
T cd08875 133 FYFLRYCKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMPN------GYSKVTWVEHVEVDEKP 200 (229)
T ss_pred EEEEEEEEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECCC------CceEEEEEEEEeccCCc
Confidence 9999999999999999999999998 6888889999999999999999997 67999999999998874
No 31
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=99.12 E-value=1.8e-09 Score=110.37 Aligned_cols=131 Identities=19% Similarity=0.122 Sum_probs=95.3
Q ss_pred cccccCCCC--ceEEEEeecCce----EEEEEEeccCcCCCCCCCCeEEEEEE-EEEcC-CCeEEEEEeeccCCCCC-CC
Q 004828 286 RYEWDMLTG--DLELVDSYDGHY----DVVYGTYDPKYLTRWQSKRDFVFSRQ-WFRGQ-DGTYTILQFPAVHKKRP-PK 356 (728)
Q Consensus 286 R~eWD~~~~--~~eVVE~lDe~T----DIiY~~~kp~~~P~~vspRDFV~LRs-wRr~~-DGsYvIa~~SV~Hp~~P-p~ 356 (728)
-.+|-..+. ++++|+..++.. .|+|+.++ +|+++++|||+.+.. ....+ ...++++..++.|+.+| +.
T Consensus 65 E~~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~---~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~ 141 (208)
T cd08864 65 EKEYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYK---FPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLY 141 (208)
T ss_pred hhhchhhhccceeEEeeecCCCccceEEEEEEEEE---CCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccC
Confidence 457999999 899999998665 88888887 466799999999988 33333 14689999999999999 89
Q ss_pred CCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE--eEecCCcc-ccccCCcccchhhhHHHHHHHHHHHHHHhh
Q 004828 357 SGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML--EIHSSGWC-RWKKNSSTKFEKTTHFALLSQVAGLKEYIG 429 (728)
Q Consensus 357 ~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~--qvD~KGwl-~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~ 429 (728)
++||||. ..+|..|+.++.. ....+.|+|++ +.|++|++ +|+.+ ..+..++..-|..+-+|+.
T Consensus 142 ~~~Vr~~-y~SgE~~~~~p~~---~~~~~~vew~maT~sDpGG~IP~wl~n------~~~p~aI~~Dv~~fl~W~~ 207 (208)
T cd08864 142 ENAVLGR-YASVEKISYLPDA---DGKSNKVEWIMATRSDAGGNIPRWLTK------LTIPKAIAKDVPLFLDWID 207 (208)
T ss_pred CCcEEEE-EEEEEEEEEcCcc---CCCcCCEEEEEEEeeCCCCcCcHHHHh------ccCchHHHHhHHHHHHHhc
Confidence 9999999 6788777765531 01345566666 99999999 35433 2333343445666656553
No 32
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.03 E-value=1.5e-09 Score=94.36 Aligned_cols=91 Identities=14% Similarity=0.294 Sum_probs=70.1
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccC
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~ 127 (728)
|||||++.+.. + .. -++|||||++..|.|||.+.... ..|..+..|+++...++... -++|+|.++
T Consensus 1 ~~G~L~k~~~~-~-~~-W~~r~~vl~~~~L~~~~~~~~~~--~~~~~~i~l~~~~~~~~~~~-------~~~F~i~~~-- 66 (91)
T cd01246 1 VEGWLLKWTNY-L-KG-WQKRWFVLDNGLLSYYKNKSSMR--GKPRGTILLSGAVISEDDSD-------DKCFTIDTG-- 66 (91)
T ss_pred CeEEEEEeccc-C-CC-ceeeEEEEECCEEEEEecCccCC--CCceEEEEeceEEEEECCCC-------CcEEEEEcC--
Confidence 79999998653 2 34 59999999999999999876543 46777777877654444322 367888754
Q ss_pred cCcceeeeccCHHHHHHHHHHHHHH
Q 004828 128 ESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 128 ~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
.++.+.|.|.|.+|+.+|++||+.|
T Consensus 67 ~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 67 GDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhC
Confidence 2378999999999999999999876
No 33
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=98.95 E-value=1.1e-08 Score=87.12 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=80.2
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEecc
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~ 126 (728)
.++|||++...+ +.+-.++||++|.++.+.+|+.++... ...|.....|++. .|.+......++ .-+.|.|.++.
T Consensus 2 ~~~G~l~~~~~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~~~~-~~~~f~l~~~~ 76 (102)
T smart00233 2 IKEGWLYKKSGG--KKKSWKKRYFVLFNSTLLYYKSEKAKK-DYKPKGSIDLSGI-TVREAPDPDSAK-KPHCFEIKTAD 76 (102)
T ss_pred ceeEEEEEeCCC--ccCCceEEEEEEECCEEEEEeCCCccc-cCCCceEEECCcC-EEEeCCCCccCC-CceEEEEEecC
Confidence 489999998776 566679999999999999999988754 3678888888887 666555543322 33677787665
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 127 DESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 127 ~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
. ..+.|.|.|.+|+..|+++|+.++
T Consensus 77 ~--~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 77 R--RSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred C--ceEEEEcCCHHHHHHHHHHHHHhh
Confidence 4 789999999999999999999886
No 34
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=98.93 E-value=6.7e-09 Score=90.23 Aligned_cols=100 Identities=17% Similarity=0.281 Sum_probs=78.6
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeecccee--eeCceEEEEEEEe
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRR--FNHGDVYVMRLYN 124 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~--~~~~~~yv~~~yn 124 (728)
.++|||++.+ .....+ ++|||||.+..|.|||.+.... ...|.....++.+ .|.+..... .....-+.|.|.+
T Consensus 2 ~~~G~L~~~~--~~~~~w-k~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~ 76 (104)
T PF00169_consen 2 IKEGWLLKKS--SSRKKW-KKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITT 76 (104)
T ss_dssp EEEEEEEEEE--SSSSSE-EEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEE
T ss_pred EEEEEEEEEC--CCCCCe-EEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEe
Confidence 5899999988 444455 9999999999999999877432 4677888888877 777655542 2334456677777
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 125 RLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 125 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
+.. ..+.|.|.|.||...|+.+|++|+
T Consensus 77 ~~~--~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 77 PNG--KSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp TTS--EEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCC--cEEEEEcCCHHHHHHHHHHHHHHh
Confidence 766 789999999999999999999986
No 35
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.88 E-value=1e-08 Score=93.64 Aligned_cols=99 Identities=17% Similarity=0.234 Sum_probs=67.3
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEEecc
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~ 126 (728)
.||||..-|...+ ..| ++|||||.++.|.|||.+....| +++||.+. ...+.|.+.-.....+...|.|.|..+
T Consensus 1 KeG~L~K~g~~~~-k~w-kkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~--~~~~~v~~~~~~~~~~~~~~~F~i~t~- 75 (103)
T cd01251 1 KEGFMEKTGPKHT-EGF-KKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQ--EDGYEVREGLPPGTQGNHWYGVTLVTP- 75 (103)
T ss_pred CceeEEecCCCCC-CCc-eeEEEEEeCCEEEEECCCCCcCcCcEEEeecc--ccceeEeccCCccccccccceEEEEeC-
Confidence 4899999776432 334 99999999999999997543322 23333331 122345331111112333468888775
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 127 DESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 127 ~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
++...|.|.|.+|+..||+||+.|+
T Consensus 76 --~Rty~l~a~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 76 --ERKFLFACETEQDRREWIAAFQNVL 100 (103)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHh
Confidence 8899999999999999999999997
No 36
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=98.79 E-value=3.3e-08 Score=88.20 Aligned_cols=94 Identities=15% Similarity=0.334 Sum_probs=66.4
Q ss_pred eeeeEEEEEccc-c-cccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEe
Q 004828 47 EYFGWVYHMGTN-S-IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (728)
Q Consensus 47 ~~eGw~y~~~~~-~-~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn 124 (728)
.++|||++-+.. + ....+ ++|||||.++.|.|||.+.... |.....+.++ .|+.. .+. + .-|+|.|-+
T Consensus 1 ~~~GwL~kk~~~~g~~~k~W-kkrwfvL~~~~L~yyk~~~~~~----~~~~I~L~~~-~v~~~-~~~-~--k~~~F~I~~ 70 (96)
T cd01260 1 DCDGWLWKRKKPGGFMGQKW-ARRWFVLKGTTLYWYRSKQDEK----AEGLIFLSGF-TIESA-KEV-K--KKYAFKVCH 70 (96)
T ss_pred CceeEEEEecCCCCccccCc-eeEEEEEECCEEEEECCCCCCc----cceEEEccCC-EEEEc-hhc-C--CceEEEECC
Confidence 379999996632 2 33466 9999999999999999765433 4445555554 44321 111 1 347888864
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 125 RLDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 125 ~~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
+ +.+.+-|+|.|.||+..||+||.+|
T Consensus 71 ~--~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 P--VYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred C--CCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 3 2377899999999999999999876
No 37
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=98.72 E-value=1.1e-07 Score=87.08 Aligned_cols=92 Identities=17% Similarity=0.318 Sum_probs=72.7
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCc------eeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEE
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGK------YVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVY 118 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~------~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d~Gr~~~~~~~~y 118 (728)
+.++|||... .++ |+|||||++. .|.|||.+..-.- ...|.+...++.|.-|..+-. ..|+ |
T Consensus 2 v~k~GyL~K~------K~~-kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d-~k~~---~ 70 (101)
T cd01257 2 VRKSGYLRKQ------KSM-HKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRAD-AKHR---H 70 (101)
T ss_pred ccEEEEEeEe------cCc-EeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccc-cccC---e
Confidence 5689999995 333 8899999998 8999998775331 267999999999998875322 2222 7
Q ss_pred EEEEEeccCcCcceeeeccCHHHHHHHHHHHHH
Q 004828 119 VMRLYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (728)
Q Consensus 119 v~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~ 151 (728)
+|.|+. +++..-|+|.|.+|...|+++|.+
T Consensus 71 ~f~i~t---~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 71 LIALYT---RDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEEe---CCceEEEEeCCHHHHHHHHHHHhh
Confidence 888877 457999999999999999999965
No 38
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.63 E-value=2e-07 Score=83.36 Aligned_cols=95 Identities=14% Similarity=0.190 Sum_probs=66.0
Q ss_pred eeeEEEEEcccccccccceeeeEEEeC--ceeeeeccCCCCCCCCCcceeeeecCceeEeec----cceeeeCceEEEEE
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL----GRRRFNHGDVYVMR 121 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~--~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~----Gr~~~~~~~~yv~~ 121 (728)
+||||..-|. .-..| ++|||||.+ ..|.|||.... ..|.-+.-+..++.|+.. |.. -|...-+.|.
T Consensus 1 ~~G~L~K~g~--~~k~W-kkRwFvL~~~~~~L~Yy~~~~~----~~~~g~I~L~~~~~v~~~~~~~~~~-~~~~~~~~f~ 72 (101)
T cd01235 1 CEGYLYKRGA--LLKGW-KPRWFVLDPDKHQLRYYDDFED----TAEKGCIDLAEVKSVNLAQPGMGAP-KHTSRKGFFD 72 (101)
T ss_pred CeEEEEEcCC--CCCCc-cceEEEEECCCCEEEEecCCCC----CccceEEEcceeEEEeecCCCCCCC-CCCCCceEEE
Confidence 5899999774 34566 999999995 49999996643 344444555555666542 111 1222335566
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 122 ~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
|. .+.+..-|.|.|.||+..|++||+++|
T Consensus 73 i~---t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 73 LK---TSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EE---eCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 64 346778999999999999999999875
No 39
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=98.62 E-value=1.9e-07 Score=85.66 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=68.3
Q ss_pred eeeEEEEEc--ccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceee---eCceEEEEEE
Q 004828 48 YFGWVYHMG--TNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF---NHGDVYVMRL 122 (728)
Q Consensus 48 ~eGw~y~~~--~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~---~~~~~yv~~~ 122 (728)
-||||+.-+ +.++|+.-.++|||||++..|.|||.++... ..|.-+..+....-|++-.-+.. +.+.-|.|.|
T Consensus 2 k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~--~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i 79 (106)
T cd01238 2 LESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKR--GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQV 79 (106)
T ss_pred cceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccc--cCcceeEECCcceEEEEecCCcCcccccccCccEEE
Confidence 489999996 4457775669999999999999999877531 22323333334444554333221 2223478888
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQ 151 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~ 151 (728)
.- +++..-|.|.|.||...|++||++
T Consensus 80 ~t---~~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 80 VH---DEGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred Ee---CCCeEEEEcCCHHHHHHHHHHHHh
Confidence 66 356778889999999999999976
No 40
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.59 E-value=2.7e-07 Score=80.62 Aligned_cols=94 Identities=12% Similarity=0.254 Sum_probs=63.8
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccC
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~ 127 (728)
|+|||+.-+... ...-++|||||.+..|.||+..+... ..|..+..+. .|.|+...... +.-+.|.|...
T Consensus 1 k~G~L~kk~~~~--~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~-~~~v~~~~~~~---~~~~~f~i~~~-- 70 (94)
T cd01250 1 KQGYLYKRSSKS--NKEWKKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLR-RCTVRHNGKQP---DRRFCFEVISP-- 70 (94)
T ss_pred CcceEEEECCCc--CCCceEEEEEEeCCeEEEEcCCcccc--cccceEEecc-ceEEecCcccc---CCceEEEEEcC--
Confidence 689999844332 33459999999999999999877432 2333333332 24444322211 23468888754
Q ss_pred cCcceeeeccCHHHHHHHHHHHHHH
Q 004828 128 ESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 128 ~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
++.+.|.|.|.+|+.+|+.||+++
T Consensus 71 -~~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 71 -TKTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred -CcEEEEECCCHHHHHHHHHHHhcC
Confidence 378999999999999999999764
No 41
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.58 E-value=4.8e-07 Score=84.94 Aligned_cols=95 Identities=13% Similarity=0.330 Sum_probs=67.7
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccC
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~ 127 (728)
.||||+.-|.. + ..| ++|||||.++.|.|||.+- +..|..+..+. +|.|+..-. .++. +.|.|+.+.+
T Consensus 2 k~G~L~K~~~~-~-~~W-kkRwfvL~~~~L~yyk~~~----~~~~~g~I~L~-~~~v~~~~~---~~~~-~~F~i~~~~~ 69 (125)
T cd01252 2 REGWLLKQGGR-V-KTW-KRRWFILTDNCLYYFEYTT----DKEPRGIIPLE-NVSIREVED---PSKP-FCFELFSPSD 69 (125)
T ss_pred cEEEEEEeCCC-C-CCe-EeEEEEEECCEEEEEcCCC----CCCceEEEECC-CcEEEEccc---CCCC-eeEEEECCcc
Confidence 58999987643 2 445 9999999999999998543 23466666666 455553211 1222 5778877665
Q ss_pred ------------------cCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 128 ------------------ESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 128 ------------------~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
......|.|.|.+|+..|+.||+.++.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~ 114 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS 114 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 124556999999999999999999984
No 42
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=98.58 E-value=3.7e-07 Score=81.70 Aligned_cols=87 Identities=10% Similarity=0.174 Sum_probs=60.3
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCC---CCCcceeeeecCceeEeeccceeeeCceEEEEEEEe
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP---GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~---~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn 124 (728)
++|||+..|. +-..| ++|||||++..|.|||.++...+ +.+||+.+.|- .+... . ..|.|..
T Consensus 1 ~~G~L~K~~~--~~k~W-k~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~-----~~~~~-----~--~~F~i~~ 65 (91)
T cd01247 1 TNGVLSKWTN--YINGW-QDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIA-----AHEFD-----E--NRFDISV 65 (91)
T ss_pred CceEEEEecc--ccCCC-ceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEE-----cCCCC-----C--CEEEEEe
Confidence 5899999773 44466 99999999999999999876431 33444443322 22111 1 2344432
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHH
Q 004828 125 RLDESKKGEIACATAGEARKWMEAFDQ 151 (728)
Q Consensus 125 ~~~~~~~~~~~a~~~eea~~W~~a~~~ 151 (728)
..++...|.|.|.+|...|++||+.
T Consensus 66 --~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 66 --NENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred --CCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 2347889999999999999999974
No 43
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=98.57 E-value=4.3e-07 Score=82.32 Aligned_cols=95 Identities=15% Similarity=0.221 Sum_probs=69.2
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEee-ccceeeeCceEEEEEEEec
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEE-LGRRRFNHGDVYVMRLYNR 125 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d-~Gr~~~~~~~~yv~~~yn~ 125 (728)
..+|||..-|.+. ..+ ++|||||+++.|.|||.+.. ..|+....+. +|.|+. .+.+...|+ =++|.|.
T Consensus 3 ~k~G~L~Kkg~~~--k~W-kkRwfvL~~~~L~yyk~~~~----~~~~~~I~L~-~~~v~~~~~~~~~~~~-~~~F~I~-- 71 (100)
T cd01233 3 SKKGYLNFPEETN--SGW-TRRFVVVRRPYLHIYRSDKD----PVERGVINLS-TARVEHSEDQAAMVKG-PNTFAVC-- 71 (100)
T ss_pred ceeEEEEeeCCCC--CCc-EEEEEEEECCEEEEEccCCC----ccEeeEEEec-ccEEEEccchhhhcCC-CcEEEEE--
Confidence 4789999987753 455 99999999999999998653 4566666666 565542 222212222 2577774
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 126 LDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 126 ~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
..++.+.|.|.|.+|...||.||...+
T Consensus 72 -t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 72 -TKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred -CCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 347889999999999999999998764
No 44
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.54 E-value=3.7e-07 Score=77.58 Aligned_cols=96 Identities=20% Similarity=0.304 Sum_probs=72.5
Q ss_pred eeeEEEEEccccc-ccccceeeeEEEeCceeeeeccCCCCCCC--CCcceeeeecCceeEeeccceeeeCceEEEEEEEe
Q 004828 48 YFGWVYHMGTNSI-GHEYCHLRFLFIRGKYVEMYKRDPHENPG--IKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (728)
Q Consensus 48 ~eGw~y~~~~~~~-g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~--~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn 124 (728)
.+||++..+.... +...-++|||+|.++.|.+|+.++...+. ..|+... . |+...... +.-++|.|.+
T Consensus 1 ~~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~-----~-v~~~~~~~---~~~~~F~i~~ 71 (99)
T cd00900 1 KEGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEI-----S-VEEDPDGS---DDPNCFAIVT 71 (99)
T ss_pred CccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccce-----E-EEECCCCC---CCCceEEEEC
Confidence 4799999888765 55666999999999999999988866643 3344332 2 44433322 3347888888
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 125 RLDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 125 ~~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
.......+.|-|.|.+|+..|+++|++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 72 KDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 7645789999999999999999999875
No 45
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.53 E-value=4.9e-07 Score=81.31 Aligned_cols=91 Identities=11% Similarity=0.215 Sum_probs=65.2
Q ss_pred eeeEEEEEcccccccccceeeeEEEeC--ceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEec
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~--~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~ 125 (728)
++|||...|...+...+ ++|||||++ ..|.|||.+... .|+.+.-+...+-+.+...+ =+.|.|..
T Consensus 1 l~GyL~K~g~~~~~K~W-kkRWFvL~~~~~~L~Yyk~~~d~----~p~G~I~L~~~~~~~~~~~~------~~~F~i~t- 68 (95)
T cd01265 1 LCGYLHKIEGKGPLRGR-RSRWFALDDRTCYLYYYKDSQDA----KPLGRVDLSGAAFTYDPREE------KGRFEIHS- 68 (95)
T ss_pred CcccEEEecCCCCCcCc-eeEEEEEcCCCcEEEEECCCCcc----cccceEECCccEEEcCCCCC------CCEEEEEc-
Confidence 36999999977667778 999999984 589999966533 35555555543333322211 13566654
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 126 LDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 126 ~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
.++...|.|.|.+|...|++||+.+
T Consensus 69 --~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 --NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred --CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 4677899999999999999999987
No 46
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=98.53 E-value=2.7e-07 Score=85.63 Aligned_cols=96 Identities=20% Similarity=0.411 Sum_probs=57.0
Q ss_pred eeeEEEEEcccccccccceeeeEEEe-CceeeeeccCCCCCCC--------CCcceeeeecCce---eEee----cccee
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIR-GKYVEMYKRDPHENPG--------IKPIRRGVIGPTL---MVEE----LGRRR 111 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~-~~~~~~yK~~p~~~~~--------~~pir~~~i~~~~---rv~d----~Gr~~ 111 (728)
+|||||.-+.- +|..| +.|||||+ +..|.|||. |.+..+ ..=++++-++... .+.. +-+..
T Consensus 1 k~G~l~K~~~~-~~kgW-k~RwFiL~k~~~L~YyK~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (112)
T PF15413_consen 1 KEGYLYKWGNK-FGKGW-KKRWFILRKDGVLSYYKI-PRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGE 77 (112)
T ss_dssp EEEEEEE--TT-S-S---EEEEEEEE-TTEEEEESS--------------TT-SB-SEEEE---GGGT-EEEES-T--SS
T ss_pred CCceEEEecCC-CCcCc-cccEEEEEeCCEEEEeec-ccccccccccccchhceEeecccCcccccccccccccCCcccC
Confidence 69999987654 99999 99999999 999999997 322210 1112222222211 1221 34556
Q ss_pred eeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 112 FNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 112 ~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
+|.+++++ ...++.+-|-|.|-||-..|++||++|
T Consensus 78 ~~~~~~~i------~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 78 IHLKVFSI------FTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -SSEEEEE------E-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCCCCcEE------ECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 67766666 446889999999999999999999876
No 47
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.42 E-value=1.8e-06 Score=78.73 Aligned_cols=95 Identities=14% Similarity=0.237 Sum_probs=65.4
Q ss_pred eeeeEEEEEcccccccccceeeeEEEe-CceeeeeccCCCCCC-CCCcceeeeecCceeEe-eccceeeeCceEEEEEEE
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIR-GKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVE-ELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~-~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~-d~Gr~~~~~~~~yv~~~y 123 (728)
..||||..-|. ...--++|||||+ +..|.|||.+|.+.+ +..|+....|.++.-+. |..+ -+.|.|-
T Consensus 2 ~k~G~L~K~g~---~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~-------~~~F~i~ 71 (102)
T cd01241 2 VKEGWLHKRGE---YIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPR-------PNTFIIR 71 (102)
T ss_pred cEEEEEEeecC---CCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCC-------cceEEEE
Confidence 47999999775 3334499999999 788999999997664 36788887777643322 2221 1456664
Q ss_pred eccCcCcc--eeeeccCHHHHHHHHHHHHHH
Q 004828 124 NRLDESKK--GEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 124 n~~~~~~~--~~~~a~~~eea~~W~~a~~~a 152 (728)
... .... -++.|.|.||...||+||+.+
T Consensus 72 ~~~-~~~~~~r~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 72 CLQ-WTTVIERTFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred ecc-CCcccCEEEEeCCHHHHHHHHHHHHhh
Confidence 111 0111 167799999999999999876
No 48
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=98.37 E-value=2.1e-06 Score=78.79 Aligned_cols=96 Identities=13% Similarity=0.068 Sum_probs=67.3
Q ss_pred eeEEEEEccccc-ccccceeeeEEEeCce-------eeeeccCCCCCCCCCcceeeeecCceeEeeccceee--eCceEE
Q 004828 49 FGWVYHMGTNSI-GHEYCHLRFLFIRGKY-------VEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF--NHGDVY 118 (728)
Q Consensus 49 eGw~y~~~~~~~-g~~~~~~Ryfvl~~~~-------~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~--~~~~~y 118 (728)
||||.+-|.... +..-=++|||||.+.- |.|||..+. ..|..+.-++.+ .+.+.|.... +...-|
T Consensus 2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~----~k~~g~I~L~~~-~~v~~~~~~~~~~~~~~~ 76 (108)
T cd01266 2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK----FKLEFVIDLESC-SQVDPGLLCTAGNCIFGY 76 (108)
T ss_pred ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC----CccceEEECCcc-EEEcccccccccCcccce
Confidence 899999766432 4444499999999875 599996543 456666666664 4444443211 223347
Q ss_pred EEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 119 VMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 119 v~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
+|+|.- ..+..-|+|.|.||...|+.+|.+.
T Consensus 77 ~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 77 GFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred EEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 787772 5678999999999999999999763
No 49
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.26 E-value=4.2e-06 Score=76.27 Aligned_cols=84 Identities=13% Similarity=0.168 Sum_probs=61.8
Q ss_pred cccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccCcCcceeeecc
Q 004828 58 NSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACA 137 (728)
Q Consensus 58 ~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~a~ 137 (728)
.+.+.+| ++|||+|.++.|.|||.+. ..|+-+..+..-.-|++.+-..... -|+|.|-.. ++.+-|-|.
T Consensus 15 ~~~~~n~-KkRwF~Lt~~~L~Y~k~~~-----~~~~g~I~L~~i~~ve~v~~~~~~~--~~~fqivt~---~r~~yi~a~ 83 (98)
T cd01244 15 WKKVLHF-KKRYFQLTTTHLSWAKDVQ-----CKKSALIKLAAIKGTEPLSDKSFVN--VDIITIVCE---DDTMQLQFE 83 (98)
T ss_pred CccCcCC-ceeEEEECCCEEEEECCCC-----CceeeeEEccceEEEEEcCCcccCC--CceEEEEeC---CCeEEEECC
Confidence 3566666 9999999999999999433 3444455555555666666544332 278888664 568999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004828 138 TAGEARKWMEAFDQA 152 (728)
Q Consensus 138 ~~eea~~W~~a~~~a 152 (728)
|.+|+..|++||+.+
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999764
No 50
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.19 E-value=5.9e-06 Score=69.52 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=69.3
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeec-cceeeeCceEEEEEEEecc
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL-GRRRFNHGDVYVMRLYNRL 126 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~-Gr~~~~~~~~yv~~~yn~~ 126 (728)
++||+++....+ .+--++||++|.+..|.+|+..+... ...|.....+.. +.|... +.+ +.-+.|.|-+..
T Consensus 1 ~~G~l~~~~~~~--~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~~~~~i~l~~-~~v~~~~~~~----~~~~~f~i~~~~ 72 (96)
T cd00821 1 KEGYLLKKTGKL--RKGWKRRWFVLFNDLLLYYKKKSSKK-SYKPKGSIPLSG-AEVEESPDDS----GRKNCFEIRTPD 72 (96)
T ss_pred CcchhhhhhChh--hCCccEEEEEEECCEEEEEECCCCCc-CCCCcceEEcCC-CEEEECCCcC----CCCcEEEEecCC
Confidence 589999877555 34449999999999999999777643 345556666666 444432 211 234777777665
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 127 DESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 127 ~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
+ +.+.|.|.|.+|+..|+.+|++|
T Consensus 73 ~--~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 73 G--RSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred C--cEEEEEeCCHHHHHHHHHHHhcC
Confidence 4 88999999999999999999864
No 51
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.15 E-value=1.2e-05 Score=73.66 Aligned_cols=97 Identities=11% Similarity=0.216 Sum_probs=63.4
Q ss_pred eeeEEEEEccc-ccccccceeeeEEEeCceeeeeccCCCCCCCCCcce-eeeecCceeEeeccceeeeCceEEEEEEEec
Q 004828 48 YFGWVYHMGTN-SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIR-RGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (728)
Q Consensus 48 ~eGw~y~~~~~-~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir-~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~ 125 (728)
.||||-.=|.. |.=.++ |+|||||.++.|.|||+++... |++ +..+..+.-|..-....-+-..-+.|.|-.
T Consensus 2 ~~G~l~k~~g~~r~~K~W-krRwF~L~~~~L~y~K~~~~~~----~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~t- 75 (101)
T cd01264 2 IEGQLKEKKGRWRFIKRW-KTRYFTLSGAQLLFQKGKSKDD----PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFT- 75 (101)
T ss_pred cceEEeecCccceeeecc-eeEEEEEeCCEEEEEeccCccC----CCCceEEcccceEEeeccccccccccCcEEEEEc-
Confidence 47887654432 233455 8999999999999999887643 221 333333333433222211111236788844
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 126 LDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 126 ~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
.++..-|.|.|.+|+..|+++|..|
T Consensus 76 --p~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 76 --ADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred --CCceEEEEeCCHHHHHHHHHHHHhh
Confidence 4688999999999999999999887
No 52
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.13 E-value=1.2e-05 Score=74.03 Aligned_cols=94 Identities=13% Similarity=0.167 Sum_probs=64.6
Q ss_pred eeeEEEEEcccc------cccccceeeeEEEe-CceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEE
Q 004828 48 YFGWVYHMGTNS------IGHEYCHLRFLFIR-GKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (728)
Q Consensus 48 ~eGw~y~~~~~~------~g~~~~~~Ryfvl~-~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~ 120 (728)
+.|||+.-+-.+ +...=-++|||||. +..|.|||.+|. ...|....-+..|..|.+- -... ++ =+.|
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~---~~~p~G~IdL~~~~~V~~~-~~~~-~~-~~~f 74 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP---TTLPQGTIDMNQCTDVVDA-EART-GQ-KFSI 74 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC---CcccceEEEccceEEEeec-cccc-CC-ccEE
Confidence 479999876663 33333489999997 689988887652 2456555556666666633 2111 11 2456
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFD 150 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~ 150 (728)
+|- ..++..-|.|.|.||..+|+++|.
T Consensus 75 ~I~---tp~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 75 CIL---TPDKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred EEE---CCCceEEEEeCCHHHHHHHHHHHH
Confidence 663 446889999999999999999985
No 53
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.08 E-value=1.9e-05 Score=74.32 Aligned_cols=80 Identities=11% Similarity=0.317 Sum_probs=63.7
Q ss_pred eeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceee--------eCceEEEEEEEeccCcCcceeeecc
Q 004828 66 HLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF--------NHGDVYVMRLYNRLDESKKGEIACA 137 (728)
Q Consensus 66 ~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~--------~~~~~yv~~~yn~~~~~~~~~~~a~ 137 (728)
++|||||++.+|.|||.... ..|.--.++|....|+..+.+.+ +...-|.|+|-| .+++++|.|.
T Consensus 34 ~kRWFvlr~s~L~Y~~~~~~----~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R~~~l~a~ 106 (121)
T cd01254 34 QKRWFIVKESFLAYMDDPSS----AQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNRSLKLKCK 106 (121)
T ss_pred cceeEEEeCCEEEEEcCCCC----CceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCcEEEEEeC
Confidence 89999999999999994332 46667788899999997776511 122358888854 5789999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004828 138 TAGEARKWMEAFDQA 152 (728)
Q Consensus 138 ~~eea~~W~~a~~~a 152 (728)
|.+++..|+++|++|
T Consensus 107 s~~~~~~Wi~~i~~a 121 (121)
T cd01254 107 SSRKLKQWMASIEDA 121 (121)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999999876
No 54
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.07 E-value=3.5e-05 Score=70.11 Aligned_cols=97 Identities=16% Similarity=0.123 Sum_probs=66.2
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC-CCCCcceeeeecCceeEeeccceeeeCceEEEEEEEec
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~-~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~ 125 (728)
.+|||+..++... .-.+.|||+|-+..|-|+|.+|... +.-.+....-+++ +.|++.- +...-+-|.|..+
T Consensus 3 ikeG~L~K~~~~~---~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~-~~v~~~~----~~~~~~~F~I~~~ 74 (101)
T cd01219 3 LKEGSVLKISSTT---EKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSG-MQVCEGD----NLERPHSFLVSGK 74 (101)
T ss_pred ccceEEEEEecCC---CCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEeccc-EEEEeCC----CCCcCceEEEecC
Confidence 4799998877543 3458899999888999999765432 1112222233333 6666531 2333455666443
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 126 LDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 126 ~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.+-+.+.|.|.||=..||.||+.||+
T Consensus 75 ---~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 ---QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred ---CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999985
No 55
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.02 E-value=3.3e-05 Score=69.91 Aligned_cols=95 Identities=13% Similarity=0.130 Sum_probs=59.5
Q ss_pred eeeEEEE--E----cccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecC-ceeEee-ccceeeeCceEEE
Q 004828 48 YFGWVYH--M----GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGP-TLMVEE-LGRRRFNHGDVYV 119 (728)
Q Consensus 48 ~eGw~y~--~----~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~-~~rv~d-~Gr~~~~~~~~yv 119 (728)
|||+++| . |+..-.+.+ ++|||||.|..|.+||.+.... +.+.....|+- ++.|+- ..-. +-=++
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~W-k~r~~vL~~~~L~~ykd~~~~~--~~~~~~~~i~l~~~~i~~~~~~~----k~~~~ 73 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSW-DNVYGVLCGQSLSFYKDEKMAA--ENVHGEPPVDLTGAQCEVASDYT----KKKHV 73 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCc-ceEEEEEeCCEEEEEecCcccc--cCCCCCCcEeccCCEEEecCCcc----cCceE
Confidence 5777774 1 333334455 9999999999999999654321 11111112221 333321 1110 12278
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~ 151 (728)
|+|-++ ..+.+.|.|.|.||...|+.||+.
T Consensus 74 F~l~~~--~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 74 FRLRLP--DGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred EEEEec--CCCEEEEECCCHHHHHHHHHHHhc
Confidence 888765 457889999999999999999975
No 56
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=98.02 E-value=0.00018 Score=72.62 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=97.5
Q ss_pred cCCHHHHHHHHHcCCCcccccccCCCCceEEEEee----------cCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcC
Q 004828 268 DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY----------DGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 337 (728)
Q Consensus 268 daspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~l----------De~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~ 337 (728)
.++-++.-..|.+.-...-.++-+.+...++|++. +....|.+..++ +|++.++|||+.|.......
T Consensus 13 ~~~~~~~~~~L~~~h~e~E~~yi~~i~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~k---fp~pl~~R~F~~Lvit~~~~ 89 (184)
T PF11274_consen 13 GASFDEFRKGLKDEHSENEKEYIPGIGSVERLERWDVDDGGGGWGDGTMEVWQLSYK---FPGPLSPRVFVVLVITADLP 89 (184)
T ss_pred CCCHHHHHHHHHhhhHHHHHHhccccceEEEEEEeccccCCcccccceEEEEEEEeE---CCCCCCCcEEEEEEEEeccC
Confidence 45666666666653110244688889999999998 566677777666 57789999999988876543
Q ss_pred ---------CCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE--eEecCCccccccCCc
Q 004828 338 ---------DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML--EIHSSGWCRWKKNSS 406 (728)
Q Consensus 338 ---------DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~--qvD~KGwl~w~p~~~ 406 (728)
...++|+...+.|+.+|+.+|+|||.-. |==.|+.++... ++...-.|.|++ .-|++|++ |.|.
T Consensus 90 ~~~~~~~~~~~~f~vVs~P~~~~~~~~~~~~V~g~Y~-SVE~ire~p~~~-~~~~~~~veW~MaT~SdaGG~I---P~w~ 164 (184)
T PF11274_consen 90 SKTEDDSTGPREFMVVSIPVDHPDSPPRKGYVRGQYE-SVERIRELPDTK-DDDEEGPVEWIMATRSDAGGSI---PRWM 164 (184)
T ss_pred ccccCCCCCCCeEEEEEEEcCCcccCCCCCCEEEEEE-EEEEEEEccCCC-CCCCCCcEEEEEEEeeCCCCcc---cHHH
Confidence 2479999999999999999999999865 444455553210 011234455555 45999999 5544
Q ss_pred ccchhhhHHHHHHHHHHH
Q 004828 407 TKFEKTTHFALLSQVAGL 424 (728)
Q Consensus 407 s~~~~~i~~~mL~~Va~L 424 (728)
.. ..+..++..-|..+
T Consensus 165 q~--~~~p~~Ia~DV~~f 180 (184)
T PF11274_consen 165 QE--MGTPGAIAKDVPKF 180 (184)
T ss_pred Hh--ccCcHHHHHHHHHH
Confidence 32 23444433344443
No 57
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=98.00 E-value=4.5e-05 Score=71.49 Aligned_cols=125 Identities=14% Similarity=0.061 Sum_probs=86.0
Q ss_pred EEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEE
Q 004828 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYT 342 (728)
Q Consensus 263 a~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYv 342 (728)
....|++|+++||++|.|.+. .++|.+.+.++++++.-+.. ..++..+.. + ...++|+....+ ..+..
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~--~~~~~p~~~~~~vl~~~~~~-~~~~~~~~~---~--~~~~~~~~~~~~--~~~~~-- 70 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVER--YPEFLPWCTASRVLERDEDE-LEAELTVGF---G--GIRESFTSRVTL--VPPES-- 70 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHh--hhhhcCCccccEEEEcCCCE-EEEEEEEee---c--cccEEEEEEEEe--cCCCE--
Confidence 455889999999999999976 88999999999999988744 455554431 2 346788754433 23332
Q ss_pred EEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCc-ccchhhhHHHHH
Q 004828 343 ILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALL 418 (728)
Q Consensus 343 Ia~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~-s~~~~~i~~~mL 418 (728)
|...++.. +-...-+.|.++|+++ ++|+|+|-++.+++|.+ +.+. +.+.+..+..||
T Consensus 71 i~~~~~~g----------~~~~~~g~w~~~p~~~------~~T~v~~~~~~~~~~~l---~~~l~~~~~~~~~~~~l 128 (138)
T cd07813 71 IEAELVDG----------PFKHLEGEWRFKPLGE------NACKVEFDLEFEFKSRL---LEALAGLVFDEVAKKMV 128 (138)
T ss_pred EEEEecCC----------ChhhceeEEEEEECCC------CCEEEEEEEEEEECCHH---HHHHHHHHHHHHHHHHH
Confidence 35555543 1122467999999885 57999999999999988 3322 334444444433
No 58
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.97 E-value=2.3e-05 Score=71.49 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=61.6
Q ss_pred eEEEEEcccccccccceeeeEEEeC----ceeeeeccCCCCCCCCCcceeeeec-CceeEeeccceeeeCceE---EEEE
Q 004828 50 GWVYHMGTNSIGHEYCHLRFLFIRG----KYVEMYKRDPHENPGIKPIRRGVIG-PTLMVEELGRRRFNHGDV---YVMR 121 (728)
Q Consensus 50 Gw~y~~~~~~~g~~~~~~Ryfvl~~----~~~~~yK~~p~~~~~~~pir~~~i~-~~~rv~d~Gr~~~~~~~~---yv~~ 121 (728)
||+..-|.+ .--.+ +.|||+|.+ +.|.|||..+.. .|+ ++|+ .++.|. .+|...+ |.|.
T Consensus 3 G~l~K~g~~-~~K~w-K~rwF~l~~~~s~~~l~yf~~~~~~----~p~--gli~l~~~~V~-----~v~ds~~~r~~cFe 69 (98)
T cd01245 3 GNLLKRTKS-VTKLW-KTLYFALILDGSRSHESLLSSPKKT----KPI--GLIDLSDAYLY-----PVHDSLFGRPNCFQ 69 (98)
T ss_pred CccccCCCC-ccccc-ceeEEEEecCCCCceEEEEcCCCCC----Ccc--ceeeccccEEE-----EccccccCCCeEEE
Confidence 676654431 12334 889999998 999999977754 344 3444 666665 6666656 9999
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHH
Q 004828 122 LYNRLDESKKGEIACATAGEARKWMEAFDQ 151 (728)
Q Consensus 122 ~yn~~~~~~~~~~~a~~~eea~~W~~a~~~ 151 (728)
|++...| ....|+|.+ ||+.+||++|+.
T Consensus 70 l~~~~~~-~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 70 IVERALP-TVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred EecCCCC-eEEEEeCCH-HHHHHHHHHHhc
Confidence 9999875 334555666 999999999974
No 59
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.95 E-value=3.4e-05 Score=73.02 Aligned_cols=105 Identities=15% Similarity=0.263 Sum_probs=75.3
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCcee--EeeccceeeeCceEEEEEEE
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~r--v~d~Gr~~~~~~~~yv~~~y 123 (728)
++|.|+|..+..-+ |..--++|||||+|..|.||| +|.+.+...|+-+..+..|+. |++--|+...+.-=|.+++.
T Consensus 1 ~~~~GfL~~~q~~~-~~k~W~RRWFvL~g~~L~y~k-~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~ 78 (122)
T cd01263 1 VEYHGFLTMFEDTS-GFGAWHRRWCALEGGEIKYWK-YPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVW 78 (122)
T ss_pred CccceeEEEEeccC-CCCCceEEEEEEeCCEEEEEc-CCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEe
Confidence 36889998765443 566669999999999998887 555565678999988888776 44344555555555666665
Q ss_pred eccC---------------cCcceeeeccCHHHHHHHHHHHHHH
Q 004828 124 NRLD---------------ESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 124 n~~~---------------~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
.... ...+.=|+|.|.||-..|++||.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 79 RPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred cccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 4331 1223568899999999999999864
No 60
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.94 E-value=7.8e-05 Score=68.03 Aligned_cols=96 Identities=15% Similarity=0.259 Sum_probs=68.0
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEecc
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~ 126 (728)
..|||+..+.+.. .++|||+|=+..|=|+++.+.....-. +|..+=-.++.|+|.-= -.++-+-|.||++
T Consensus 3 ikEG~L~K~~~k~-----~~~R~~FLFnD~LlY~~~~~~~~~~y~-~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~- 72 (99)
T cd01220 3 IRQGCLLKLSKKG-----LQQRMFFLFSDLLLYTSKSPTDQNSFR-ILGHLPLRGMLTEESEH---EWGVPHCFTIFGG- 72 (99)
T ss_pred eeEEEEEEEeCCC-----CceEEEEEccceEEEEEeecCCCceEE-EEEEEEcCceEEeeccC---CcCCceeEEEEcC-
Confidence 4699999987642 578999999999989988775431111 22222234555664211 1245578999955
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 127 DESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 127 ~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.+-+.+.|.|.||-..||++|++||+
T Consensus 73 --~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 --QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred --CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 57799999999999999999999984
No 61
>PF15409 PH_8: Pleckstrin homology domain
Probab=97.93 E-value=3e-05 Score=69.59 Aligned_cols=85 Identities=13% Similarity=0.328 Sum_probs=60.0
Q ss_pred eEEEEEcccccccccceeeeEEE--eCceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEEecc
Q 004828 50 GWVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (728)
Q Consensus 50 Gw~y~~~~~~~g~~~~~~Ryfvl--~~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~ 126 (728)
|||..=++++ ++=.|+||||| +.-.|.||+.+..... +.+||+.++|..+. ..+--.+--|..+|.|.
T Consensus 1 G~llKkrr~~--lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~--~~~~I~idsg~~i~hLK----- 71 (89)
T PF15409_consen 1 GWLLKKRRKP--LQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK--KSRRIDIDSGDEIWHLK----- 71 (89)
T ss_pred Ccceeecccc--CCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC--CCCEEEEEcCCeEEEEE-----
Confidence 6777754444 34449999999 9999999995544322 67899999887653 22222244455555443
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 127 DESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 127 ~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
|.|.+|...|+.||+.|
T Consensus 72 ---------a~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 72 ---------AKSQEDFQRWVSALQKA 88 (89)
T ss_pred ---------cCCHHHHHHHHHHHHhc
Confidence 89999999999999987
No 62
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.89 E-value=0.00035 Score=65.49 Aligned_cols=142 Identities=14% Similarity=0.061 Sum_probs=81.2
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeE
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsY 341 (728)
+++..|++||++||++|.|.+. .++|.+.+.++++++.-++. ..+++......+ ..+-+.-+.++ +...++...
T Consensus 2 ~~~~~i~a~~~~Vw~~l~D~~~--~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~--~~~~~~~v~~~-~~~~~~~~~ 75 (144)
T cd08866 2 VARVRVPAPPETVWAVLTDYDN--LAEFIPNLAESRLLERNGNR-VVLEQTGKQGIL--FFKFEARVVLE-LREREEFPR 75 (144)
T ss_pred eEEEEECCCHHHHHHHHhChhh--HHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEE--eeeeeEEEEEE-EEEecCCCc
Confidence 5677899999999999999976 88999999999999885443 334432111000 00000111111 111111011
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHHH
Q 004828 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQV 421 (728)
Q Consensus 342 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~V 421 (728)
.+..+.+.. | + ...-+.|.++|.++ +++|+|+|-+++++++.+ |.+. ...-+...+...+
T Consensus 76 ~i~~~~~~g---~-----~--~~~~g~w~~~~~~~-----~~~t~v~~~~~~~~~~~~---p~~l--~~~~~~~~~~~~l 135 (144)
T cd08866 76 ELDFEMVEG---D-----F--KRFEGSWRLEPLAD-----GGGTLLTYEVEVKPDFFA---PVFL--VEFVLRQDLPTNL 135 (144)
T ss_pred eEEEEEcCC---c-----h--hceEEEEEEEECCC-----CCeEEEEEEEEEEeCCCC---CHHH--HHHHHHHHHHHHH
Confidence 122222211 1 0 23457899999874 257999999999999988 4422 2222333334566
Q ss_pred HHHHHHhh
Q 004828 422 AGLKEYIG 429 (728)
Q Consensus 422 a~LRe~~~ 429 (728)
++||+..+
T Consensus 136 ~~lr~~ae 143 (144)
T cd08866 136 LAIRAEAE 143 (144)
T ss_pred HHHHHHHh
Confidence 67776553
No 63
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.82 E-value=0.0001 Score=67.02 Aligned_cols=96 Identities=18% Similarity=0.303 Sum_probs=68.0
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEEecc
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~ 126 (728)
--|||=.... +|..-=++.|+|||....|.+||.+-...| .+.|+ .|++|.|.----.+++ +.|.+||+.
T Consensus 3 rkgwl~~~n~-~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpL------dnLk~Rdve~gf~sk~--~~FeLfnpd 73 (110)
T cd01256 3 RKGWLSISNV-GIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPL------DGLKLRDIEGGFMSRN--HKFALFYPD 73 (110)
T ss_pred eeeeEEeecc-ceecCCCcceEEEEecceeeeecccccccccceeec------cccEEEeecccccCCC--cEEEEEcCc
Confidence 3589876433 343445789999999999999997754443 34444 3444443321123333 899999876
Q ss_pred C-----cCcceeeeccCHHHHHHHHHHHHHH
Q 004828 127 D-----ESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 127 ~-----~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
. ..+|++|+|.|.||...||-+|..|
T Consensus 74 ~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 74 GRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 3 4689999999999999999999876
No 64
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=97.79 E-value=4.2e-06 Score=95.03 Aligned_cols=92 Identities=16% Similarity=0.128 Sum_probs=80.5
Q ss_pred CCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccc
Q 004828 321 WQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCR 400 (728)
Q Consensus 321 ~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~ 400 (728)
+++.|||+++| |.|+++..||+|...++-.| |||.+..+.|+|+|++. .+++|+|++.+|+||..
T Consensus 575 ph~~~~~~ViR-------gacv~a~~svk~~~a~~l~~-vrA~~~~~r~liep~g~------g~sr~~~i~r~dlkg~~- 639 (674)
T KOG2200|consen 575 PHPSRDFGVIR-------GACVLAPLSVKVSMAIQLGG-VRATVLDSRFLIEPCGG------GQSRVTHICRVDLKGRS- 639 (674)
T ss_pred CCCCCCceeee-------eeeeecccccchhhhhhhcc-chhhhhhhhhhccccCC------cchhhhhhhhhhcccCC-
Confidence 47899999999 78999999999966666656 99999999999999986 57899999999999999
Q ss_pred cccCCcccchhhhHHHHHHHHHHHHHHhhcCC
Q 004828 401 WKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 432 (728)
Q Consensus 401 w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~~ 432 (728)
+.||++-.+++|. ..++.+|+.|....
T Consensus 640 --~~wy~k~fg~~c~---~~~~~~r~sf~~~~ 666 (674)
T KOG2200|consen 640 --PEWYNKSFGHLCC---LEVARIRDSFHTLQ 666 (674)
T ss_pred --chhhhccccchhh---hhhcccchhhcccc
Confidence 8899999999887 47888888886543
No 65
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.61 E-value=0.00029 Score=65.22 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=66.6
Q ss_pred ccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccC-cCcceeee
Q 004828 57 TNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD-ESKKGEIA 135 (728)
Q Consensus 57 ~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~-~~~~~~~~ 135 (728)
..++..-=.++|||+|+++.|.|||.++..+ ..|+=.+.--+|....|.- +-. .-|.+++-...+ ..+.+-|.
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~---~~~-~kf~I~l~~ps~~~~r~y~l~ 85 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVN---VAQ-QKFHIKLLIPTAEGMNEVWLR 85 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEccccc---ccc-cceEEEEecCCccCCeEEEEE
Confidence 3445444468999999999999999988766 5666555555555555530 001 128999987763 34679999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 004828 136 CATAGEARKWMEAFDQAK 153 (728)
Q Consensus 136 a~~~eea~~W~~a~~~a~ 153 (728)
|.|.|+=++||.|++.|.
T Consensus 86 cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 86 CDNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999999995
No 66
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.53 E-value=0.0022 Score=59.13 Aligned_cols=134 Identities=13% Similarity=0.045 Sum_probs=80.7
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCc-eEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCC
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH-YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG 339 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~-TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DG 339 (728)
+.....|++||++||++|.|.+. .++|.+.+.++++++.-+.. ....+..+.. + ..+. +|+. +. ...+.
T Consensus 4 v~~s~~i~ap~e~V~~~l~D~~~--~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~-~~~~-~~-~~~~~- 73 (140)
T cd07819 4 VSREFEIEAPPAAVMDVLADVEA--YPEWSPKVKSVEVLLRDNDGRPEMVRIGVGA---Y-GIKD-TYAL-EY-TWDGA- 73 (140)
T ss_pred EEEEEEEeCCHHHHHHHHhChhh--hhhhCcceEEEEEeccCCCCCEEEEEEEEee---e-eEEE-EEEE-EE-EEcCC-
Confidence 44566899999999999999976 89999999999988665432 2344433321 1 1211 3332 21 22221
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcc-cchhhhHHHHH
Q 004828 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSST-KFEKTTHFALL 418 (728)
Q Consensus 340 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s-~~~~~i~~~mL 418 (728)
..|..+++... +.....+.|.++|.++ .|+|+|-++.+++|.+ |.+.- .+.+.+. .
T Consensus 74 -~~i~~~~~~~~---------~~~~~~~~~~~~~~~~-------~t~vt~~~~~~~~~~~---~~~~~~~~~~~~~---~ 130 (140)
T cd07819 74 -GSVSWTLVEGE---------GNRSQEGSYTLTPKGD-------GTRVTFDLTVELTVPL---PGFLKRKAEPLVL---D 130 (140)
T ss_pred -CcEEEEEeccc---------ceeEEEEEEEEEECCC-------CEEEEEEEEEEecCCC---CHHHHHHhhhHHH---H
Confidence 22444544331 1122336799999763 5999999999999988 44332 2222222 2
Q ss_pred HHHHHHHHH
Q 004828 419 SQVAGLKEY 427 (728)
Q Consensus 419 ~~Va~LRe~ 427 (728)
..+.+||++
T Consensus 131 ~~~~~l~~~ 139 (140)
T cd07819 131 EALKGLKKR 139 (140)
T ss_pred HHHHhHhhh
Confidence 455666654
No 67
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00024 Score=74.94 Aligned_cols=97 Identities=20% Similarity=0.421 Sum_probs=71.8
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEEe
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn 124 (728)
++-|||+..+|.|+. .+| .+|+|||..++|.||.---...| +++|+--+-|. .|+ --+.=+.|.+||
T Consensus 260 pdREGWLlKlgg~rv-ktW-KrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir---~Ve-------dP~kP~cfEly~ 327 (395)
T KOG0930|consen 260 PDREGWLLKLGGNRV-KTW-KRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIR---EVE-------DPKKPNCFELYI 327 (395)
T ss_pred ccccceeeeecCCcc-cch-hheeEEeecceeeeeeeccCCCCCcceecccccee---ecc-------CCCCCCeEEEec
Confidence 448999999999854 345 88999999999999875444444 45555444331 122 234457899999
Q ss_pred ccCcCcce-------------------eeeccCHHHHHHHHHHHHHHHH
Q 004828 125 RLDESKKG-------------------EIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 125 ~~~~~~~~-------------------~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.+++..+| +|.|.|.||-..||++|+.++.
T Consensus 328 ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is 376 (395)
T KOG0930|consen 328 PSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS 376 (395)
T ss_pred CCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence 99866655 4778999999999999999985
No 68
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.34 E-value=0.0015 Score=61.49 Aligned_cols=98 Identities=13% Similarity=0.126 Sum_probs=70.3
Q ss_pred eeEEEEE-------cccccccccceeeeEEEeCceeeeeccCCCCCCC---CCcceeeeecCce-eEeeccceeeeCceE
Q 004828 49 FGWVYHM-------GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG---IKPIRRGVIGPTL-MVEELGRRRFNHGDV 117 (728)
Q Consensus 49 eGw~y~~-------~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~---~~pir~~~i~~~~-rv~d~Gr~~~~~~~~ 117 (728)
||+|+|= .+.++|..+=++||.||+|..|..||.+=...+. +.+-....|.+++ .|. ....+.=
T Consensus 3 ~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia-----~dy~Kr~ 77 (117)
T cd01230 3 HGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRA-----SDYSKKP 77 (117)
T ss_pred CcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEee-----ccccCCC
Confidence 5666652 1234556666999999999999999987431111 1223455566665 665 6677777
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 118 yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
+||+|-... .+.+-|-|.+.||+..|+.+|..|+
T Consensus 78 ~VF~L~~~~--g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 78 HVFRLRTAD--WREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred cEEEEEcCC--CCEEEEECCCHHHHHHHHHHHHHHH
Confidence 899998754 4677888999999999999999887
No 69
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.23 E-value=0.0054 Score=56.86 Aligned_cols=114 Identities=10% Similarity=-0.157 Sum_probs=69.4
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
++....+++||++||++|.|.+. ..+|.+.+.+.++++ ++.-.++...+. ++.+.|.-...+.....++..
T Consensus 3 ~~~~~~i~a~~e~v~~~l~D~~~--~~~w~p~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 73 (144)
T cd05018 3 ISGEFRIPAPPEEVWAALNDPEV--LARCIPGCESLEKIG---PNEYEATVKLKV----GPVKGTFKGKVELSDLDPPES 73 (144)
T ss_pred eeeEEEecCCHHHHHHHhcCHHH--HHhhccchhhccccC---CCeEEEEEEEEE----ccEEEEEEEEEEEEecCCCcE
Confidence 45667899999999999999876 789999888765543 443444443332 123333322222222233334
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
|++-.... .+ .+......-|.++|. + +.|+|+|-.+++++|.+
T Consensus 74 ~~~~~~~~-~~--------~~~~~~~~~~~l~~~-~------~gT~v~~~~~~~~~g~l 116 (144)
T cd05018 74 YTITGEGK-GG--------AGFVKGTARVTLEPD-G------GGTRLTYTADAQVGGKL 116 (144)
T ss_pred EEEEEEEc-CC--------CceEEEEEEEEEEec-C------CcEEEEEEEEEEEccCh
Confidence 44432221 11 111234577899997 3 45999999999999976
No 70
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=96.99 E-value=0.011 Score=55.21 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=66.0
Q ss_pred EEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEE--EEEEEcCCCeE
Q 004828 264 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFS--RQWFRGQDGTY 341 (728)
Q Consensus 264 ~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~L--RswRr~~DGsY 341 (728)
..+|++||++||++|.|... -++|.+. ...++|+. ++....++. .. ...+++... ..+..+..+..
T Consensus 4 s~~i~ap~~~V~~~l~D~~~--~p~~~p~-~~~~~~~~-~~~~~~~~~-~~-------~~~~g~~~~~~~~~~~~~~~~~ 71 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAER--WPEFLPT-VHVERLEL-DGGVERLRM-WA-------TAFDGSVHTWTSRRVLDPEGRR 71 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHh--hhccCCC-ceEEEEEE-cCCEEEEEE-EE-------EcCCCcEEEEEEEEEEcCCCCE
Confidence 45899999999999999876 6789998 77887776 344444442 11 111222211 11112232322
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 342 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
|+...+.-+. + . ...-+-|.++|.++ ++|+|+|.+..++++.+
T Consensus 72 -i~~~~~~~~~--~----~--~~~~g~w~~~~~~~------~~t~Vt~~~~~~~~~~~ 114 (142)
T cd08861 72 -IVFRQEEPPP--P----V--ASMSGEWRFEPLGG------GGTRVTLRHDFTLGIDS 114 (142)
T ss_pred -EEEEEeeCCC--C----h--hhheeEEEEEECCC------CcEEEEEEEEEEECCCC
Confidence 3333332110 1 1 12345899999874 46999999999999877
No 71
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.98 E-value=0.0067 Score=57.36 Aligned_cols=102 Identities=13% Similarity=0.181 Sum_probs=71.3
Q ss_pred eeEEEEEcccc--cccccceeeeEEEeC--ceeeeeccCCC-CCCCCCcceeeeecCceeEeeccceeeeC---ceEEEE
Q 004828 49 FGWVYHMGTNS--IGHEYCHLRFLFIRG--KYVEMYKRDPH-ENPGIKPIRRGVIGPTLMVEELGRRRFNH---GDVYVM 120 (728)
Q Consensus 49 eGw~y~~~~~~--~g~~~~~~Ryfvl~~--~~~~~yK~~p~-~~~~~~pir~~~i~~~~rv~d~Gr~~~~~---~~~yv~ 120 (728)
-.|||.+.++. .+..=.|.|||.|.. ..|.-...+|. .++.+.=.+++.|+.=..|.|.-.-..-- .--|.|
T Consensus 12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si 91 (123)
T PF12814_consen 12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI 91 (123)
T ss_pred ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence 45999998876 334568999999999 45555555664 34445567788888888887762211110 022444
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.|. ..++.|+|.|.|.|++..|+++|+..+
T Consensus 92 ~i~---t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 92 IIV---TPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred EEE---cCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 444 346799999999999999999998775
No 72
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=96.82 E-value=0.045 Score=53.03 Aligned_cols=136 Identities=17% Similarity=0.119 Sum_probs=80.6
Q ss_pred EEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEE---EEcCCCe
Q 004828 264 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQW---FRGQDGT 340 (728)
Q Consensus 264 ~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRsw---Rr~~DGs 340 (728)
..+|++||++||++|.|... -++|.+.+.++++++. +++....-..+... .. .+ ...| +..+...
T Consensus 6 si~i~a~~~~v~~lvaDv~~--~P~~~~~~~~~~~l~~-~~~~~~~r~~i~~~-----~~--g~--~~~w~s~~~~~~~~ 73 (146)
T cd08860 6 SIVIDAPLDLVWDMTNDIAT--WPDLFSEYAEAEVLEE-DGDTVRFRLTMHPD-----AN--GT--VWSWVSERTLDPVN 73 (146)
T ss_pred EEEEcCCHHHHHHHHHhhhh--hhhhccceEEEEEEEe-cCCeEEEEEEEEec-----cC--CE--EEEEEEEEEecCCC
Confidence 44899999999999999976 8899999999999986 44434443332221 11 12 2233 2233334
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~ 420 (728)
+.|.++ +.+. +|-. ..-+.|.++|++. + |+|++......++-.+....+........ +-..
T Consensus 74 ~~i~~~--~~~~-~p~~------~m~~~W~f~~~~~------g-T~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 134 (146)
T cd08860 74 RTVRAR--RVET-GPFA------YMNIRWEYTEVPE------G-TRMRWVQDFEMKPGAPVDDAAMTDRLNTN---TRAQ 134 (146)
T ss_pred cEEEEE--EecC-CCcc------eeeeeEEEEECCC------C-EEEEEEEEEEECCCCccchHHHHHHHhcc---cHHH
Confidence 556554 3333 2321 3457899999863 3 99999999987753311111122222222 2246
Q ss_pred HHHHHHHhhc
Q 004828 421 VAGLKEYIGA 430 (728)
Q Consensus 421 Va~LRe~~~~ 430 (728)
+++||...++
T Consensus 135 l~~Lk~~aE~ 144 (146)
T cd08860 135 MARIKKKIEA 144 (146)
T ss_pred HHHHHHHhhh
Confidence 6777776654
No 73
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=96.68 E-value=0.059 Score=49.71 Aligned_cols=107 Identities=11% Similarity=0.034 Sum_probs=66.7
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeE
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsY 341 (728)
.....|++|+++||+++.|... .++|.+.+.+++++.. . .. .+.++. |. ...++|..-. .....+..
T Consensus 3 ~~~i~I~ap~e~V~~~~~D~~~--~~~w~~~~~~~~~~~~---~-~~-~~~~~~---~~-g~~~~~~~~v-~~~~~~~~- 69 (139)
T cd07817 3 EKSITVNVPVEEVYDFWRDFEN--LPRFMSHVESVEQLDD---T-RS-HWKAKG---PA-GLSVEWDAEI-TEQVPNER- 69 (139)
T ss_pred eEEEEeCCCHHHHHHHHhChhh--hHHHhhhhcEEEEcCC---C-ce-EEEEec---CC-CCcEEEEEEE-eccCCCCE-
Confidence 4566899999999999999976 8899999888777643 1 11 122222 21 3445564321 12223332
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 342 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
|.......+. . ..+-|.++|.++ ++|+||+.++.++.+.+
T Consensus 70 -i~~~~~~~~~--~---------~~~~~~f~~~~~------~~T~vt~~~~~~~~~~~ 109 (139)
T cd07817 70 -IAWRSVEGAD--P---------NAGSVRFRPAPG------RGTRVTLTIEYEPPGGA 109 (139)
T ss_pred -EEEEECCCCC--C---------cceEEEEEECCC------CCeEEEEEEEEECCcch
Confidence 3444433221 1 235566788764 57999999999999877
No 74
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=96.42 E-value=0.12 Score=47.19 Aligned_cols=137 Identities=16% Similarity=0.031 Sum_probs=76.9
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
++....|++|+++||++|.|.+. ...|.+.+.+.++++.-+ .....+..... .. ..+. -+ ....+...
T Consensus 3 i~~~~~i~a~~~~V~~~l~d~~~--~~~w~~~~~~~~~~~~~~-~~g~~~~~~~~----~g---~~~~-~~-i~~~~~~~ 70 (140)
T cd07821 3 VTVSVTIDAPADKVWALLSDFGG--LHKWHPAVASCELEGGGP-GVGAVRTVTLK----DG---GTVR-ER-LLALDDAE 70 (140)
T ss_pred EEEEEEECCCHHHHHHHHhCcCc--hhhhccCcceEEeecCCC-CCCeEEEEEeC----CC---CEEE-EE-ehhcCccC
Confidence 56677899999999999999876 779999888777665432 11112211111 11 1111 11 11112221
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~ 420 (728)
..|....+.- ..| .....+-|.++|.++ ++|+|+|-.+.+++|.+ +. ..+...+...+-..
T Consensus 71 ~~i~~~~~~~-~~~-------~~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~ 131 (140)
T cd07821 71 RRYSYRIVEG-PLP-------VKNYVATIRVTPEGD------GGTRVTWTAEFDPPEGL---TD--ELARAFLTGVYRAG 131 (140)
T ss_pred CEEEEEecCC-CCC-------cccceEEEEEEECCC------CccEEEEEEEEecCCCc---ch--HHHHHHHHHHHHHH
Confidence 3344444321 011 112346789999775 47999999999999865 22 11222333333356
Q ss_pred HHHHHHHh
Q 004828 421 VAGLKEYI 428 (728)
Q Consensus 421 Va~LRe~~ 428 (728)
+++|++++
T Consensus 132 l~~L~~~~ 139 (140)
T cd07821 132 LAALKAAL 139 (140)
T ss_pred HHHHHHhh
Confidence 77777765
No 75
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=96.36 E-value=0.29 Score=44.77 Aligned_cols=135 Identities=15% Similarity=0.136 Sum_probs=73.6
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
+.....|+++|++||++|.|... ...|.+.+..++++. ++...+.. .+... +. .-+..+....++++.
T Consensus 4 ~~~~~~v~a~~e~V~~~l~d~~~--~~~w~~~~~~~~~~~--~~~~~~~~-~~~~~---g~----~~~~~~i~~~~~~~~ 71 (139)
T PF10604_consen 4 VEVSIEVPAPPEAVWDLLSDPEN--WPRWWPGVKSVELLS--GGGPGTER-TVRVA---GR----GTVREEITEYDPEPR 71 (139)
T ss_dssp EEEEEEESS-HHHHHHHHTTTTG--GGGTSTTEEEEEEEE--ECSTEEEE-EEEEC---SC----SEEEEEEEEEETTTT
T ss_pred EEEEEEECCCHHHHHHHHhChhh--hhhhhhceEEEEEcc--ccccceeE-EEEec---cc----cceeEEEEEecCCCc
Confidence 34556899999999999999876 778999888777666 23332222 22221 11 223333333333233
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~ 420 (728)
.+- .+.+ . .++.. .-..|.+.|.++ + |.|++..++++ |+.+|+.. ..+...+-..+-..
T Consensus 72 ~~~-~~~~---~----~~~~~---~~~~~~~~~~~~------g-t~v~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~ 130 (139)
T PF10604_consen 72 RIT-WRFV---P----SGFTN---GTGRWRFEPVGD------G-TRVTWTVEFEP-GLPGWLAG--PLLRPAVKRIVREA 130 (139)
T ss_dssp EEE-EEEE---S----SSSCE---EEEEEEEEEETT------T-EEEEEEEEEEE-SCTTSCHH--HHHHHHHHHHHHHH
T ss_pred EEE-EEEE---e----cceeE---EEEEEEEEEcCC------C-EEEEEEEEEEE-eccchhhH--HHHHHHHHHHHHHH
Confidence 322 2222 1 12222 245699999874 2 99999999998 55543211 11222222223355
Q ss_pred HHHHHHHh
Q 004828 421 VAGLKEYI 428 (728)
Q Consensus 421 Va~LRe~~ 428 (728)
+++|++.+
T Consensus 131 l~~l~~~~ 138 (139)
T PF10604_consen 131 LENLKRAA 138 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHhccc
Confidence 66666654
No 76
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.67 E-value=0.19 Score=47.11 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=74.1
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeec--cceee-eCceEEEEEEE
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL--GRRRF-NHGDVYVMRLY 123 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~--Gr~~~-~~~~~yv~~~y 123 (728)
.|+|=+.++..++. ..+.|+|+|=.++|=|=|++-... ++-=.|.-+.=..+.|+|+ |++.. +..+=+-|.||
T Consensus 3 i~~Gel~~~s~~~g---~~q~R~~FLFD~~LI~CKkd~~r~-~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 3 FLQGEATRQKQNKG---WNSSRVLFLFDHQMVLCKKDLIRR-DHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred eEeeeEEEEecccC---CcccEEEEEecceEEEEecccccC-CcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 36677777664322 235899999999999999764333 4566677777788888887 66553 23456789999
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQ 151 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~ 151 (728)
|.. .+.-+.+-|.|+||-.+||+||..
T Consensus 79 ~~~-~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SES-TDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred EcC-CCeEEEEEECCHHHHHHHHHHHHH
Confidence 984 356689999999999999999964
No 77
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=95.67 E-value=0.072 Score=49.03 Aligned_cols=109 Identities=15% Similarity=0.113 Sum_probs=72.0
Q ss_pred ecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEe
Q 004828 267 IDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQF 346 (728)
Q Consensus 267 Vdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~ 346 (728)
|++|+++||++|.|.+. -++|-+.+.++++++.-++++.+.. .... ...++.|+.-...... .. |...
T Consensus 1 V~ap~~~V~~~i~D~e~--~~~~~p~~~~v~vl~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~--~~--~~~~ 68 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYEN--YPRFFPPVKEVRVLERDGDGMRARW-EVKF-----GGIKRSWTSRVTEDPP--ER--IRFE 68 (130)
T ss_dssp ESS-HHHHHHHHTTGGG--HHHHCTTEEEEEEEEEECCEEEEEE-EECT-----TTTCEEEEEEEEEECT--TT--EEEE
T ss_pred CCCCHHHHHHHHHHHHH--HHHhCCCCceEEEEEeCCCeEEEEE-EEec-----CCEEEEEEEEEEEEEe--ee--eeee
Confidence 68999999999999876 8899999999999999988655522 2221 2334556543333222 22 2222
Q ss_pred eccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 347 PAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 347 SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
.+. |-. ...-+.|-++|.+++ +++.+|.+++-+.+++++.+
T Consensus 69 ~~~--------g~~--~~~~g~W~~~~~~~~--~~g~~~~v~~~~~~~~~~~~ 109 (130)
T PF03364_consen 69 QIS--------GPF--KSFEGSWRFEPLGGN--EGGTRTRVTYDYEVDPPGPL 109 (130)
T ss_dssp SSE--------TTE--EEEEEEEEEEEETTE--CCEEEEEEEEEEEEETSSSS
T ss_pred ecC--------CCc--hhcEEEEEEEECCCC--cCCCEEEEEEEEEEecCcHh
Confidence 221 111 234578999999841 12467999999999999999
No 78
>PRK10724 hypothetical protein; Provisional
Probab=95.59 E-value=0.27 Score=48.53 Aligned_cols=113 Identities=12% Similarity=0.157 Sum_probs=76.2
Q ss_pred cEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCC
Q 004828 259 VLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQD 338 (728)
Q Consensus 259 ~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~D 338 (728)
+.++....|++|++++|++|.|.+. -++|=+.+.+++++++-++.. +....+. + .+ . ..-|..-..+ ..+
T Consensus 15 ~~i~~~~~v~~s~~~v~~lv~Dve~--yp~flp~~~~s~vl~~~~~~~-~a~l~v~--~-~g-~-~~~f~srv~~--~~~ 84 (158)
T PRK10724 15 PQISRTALVPYSAEQMYQLVNDVQS--YPQFLPGCTGSRVLESTPGQM-TAAVDVS--K-AG-I-SKTFTTRNQL--TSN 84 (158)
T ss_pred CeEEEEEEecCCHHHHHHHHHHHHH--HHHhCcccCeEEEEEecCCEE-EEEEEEe--e-CC-c-cEEEEEEEEe--cCC
Confidence 3466777999999999999999976 789999999999999977653 2221121 1 11 1 2234433333 233
Q ss_pred CeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 339 GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 339 GsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
. -|....++. | - + .+-+.|.++|.++ ++|+|++.++..++-.+
T Consensus 85 ~--~I~~~~~~G---p-F----~--~l~g~W~f~p~~~------~~t~V~~~l~fef~s~l 127 (158)
T PRK10724 85 Q--SILMQLVDG---P-F----K--KLIGGWKFTPLSQ------EACRIEFHLDFEFTNKL 127 (158)
T ss_pred C--EEEEEecCC---C-h----h--hccceEEEEECCC------CCEEEEEEEEEEEchHH
Confidence 3 244455533 2 1 1 2678999999875 46999999999988887
No 79
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=95.36 E-value=0.13 Score=48.27 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=56.7
Q ss_pred eeeEEEEE------cccc--cccccceeeeEEEeCceeeeeccCCCC----C------CCCCcceeeeecCceeEeeccc
Q 004828 48 YFGWVYHM------GTNS--IGHEYCHLRFLFIRGKYVEMYKRDPHE----N------PGIKPIRRGVIGPTLMVEELGR 109 (728)
Q Consensus 48 ~eGw~y~~------~~~~--~g~~~~~~Ryfvl~~~~~~~yK~~p~~----~------~~~~pir~~~i~~~~rv~d~Gr 109 (728)
.|||++|- |.+. -.+++ ++=|.||.|..|.+||.+... . +...|+.+..|.+++--...+-
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~W-k~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSW-KQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---E-EEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCc-cEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 58998882 3332 34555 788999999999999983211 1 1134556666665554444443
Q ss_pred eeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 110 RRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 110 ~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.. -=+||+|- .....+.-|-|.|.||...|+.+|..++
T Consensus 81 ~K----r~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TK----RKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TT----CSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cc----CCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 22 33456663 3446788999999999999999998775
No 80
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.61 E-value=0.12 Score=48.61 Aligned_cols=51 Identities=14% Similarity=0.286 Sum_probs=35.5
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEe
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVE 105 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~ 105 (728)
.||||+|+-..- .--+++|++|+.|.+.||+.+-. ..|.|.+....=+.|+
T Consensus 2 kEGWmVHyT~~d---~~rKRhYWrLDsK~Itlf~~e~~----skyyKeIPLsEIl~V~ 52 (117)
T cd01239 2 KEGWMVHYTSSD---NRRKKHYWRLDSKAITLYQEESG----SRYYKEIPLAEILSVS 52 (117)
T ss_pred ccceEEEEecCc---cceeeeEEEecCCeEEEEEcCCC----CeeeEEeehHHheEEe
Confidence 599999986543 22357899999999999997543 4455555544445554
No 81
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=94.30 E-value=1.9 Score=37.79 Aligned_cols=113 Identities=14% Similarity=0.075 Sum_probs=64.2
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeE
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsY 341 (728)
+....|++|+++||+.|.|... ..+|.+.+..+++++.........+. ... ......++. .+.......-.+
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~-~~v~~~~~~~~~ 73 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPER--WPEWSPGLERVEVLGGGEGGVGARFV-GGR----KGGRRLTLT-SEVTEVDPPRPG 73 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhh--hhhhCcccceEEEcCCCCccceeEEE-EEe----cCCccccce-EEEEEecCCCce
Confidence 3456899999999999999876 88999998888877653222122111 110 000111111 111111111111
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 342 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
.....+-.+. ......|.+.|.++ ..|+|++-...+++++.
T Consensus 74 ~~~~~~~~~~-----------~~~~~~~~~~~~~~------~~t~v~~~~~~~~~~~~ 114 (141)
T cd07812 74 RFRVTGGGGG-----------VDGTGEWRLEPEGD------GGTRVTYTVEYDPPGPL 114 (141)
T ss_pred EEEEecCCCC-----------cceeEEEEEEECCC------CcEEEEEEEEEecCCcc
Confidence 1111111111 13456788888764 47999999999999987
No 82
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=93.76 E-value=1.6 Score=39.69 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=29.5
Q ss_pred EEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEE
Q 004828 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (728)
Q Consensus 263 a~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE 300 (728)
....|++||++||++|.|... ..+|.+.+..++.+.
T Consensus 3 ~~~~i~ap~~~Vw~~l~d~~~--~~~w~~~~~~~~~~~ 38 (140)
T cd08865 3 ESIVIERPVEEVFAYLADFEN--APEWDPGVVEVEKIT 38 (140)
T ss_pred eEEEEcCCHHHHHHHHHCccc--hhhhccCceEEEEcC
Confidence 355799999999999999876 779999887666654
No 83
>KOG3845 consensus MLN, STAR and related lipid-binding proteins [Lipid transport and metabolism]
Probab=93.64 E-value=0.0041 Score=65.44 Aligned_cols=156 Identities=12% Similarity=-0.018 Sum_probs=101.9
Q ss_pred CEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEec
Q 004828 235 WKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYD 314 (728)
Q Consensus 235 W~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~k 314 (728)
|.+....+-+.++.+..+. ..+.+.++..+.+-.....-..+.-+.. +..|+.--.-...++.+..++++....+.
T Consensus 27 ~s~~k~~~~v~~~~~a~~~--~~~~i~~v~~~~~lf~~~~~~~i~~~~~--i~~~~~g~~v~~~~~~~~~~~~~~~s~~~ 102 (241)
T KOG3845|consen 27 WSVAKTLKLVTVESLAGEK--PKGNISRVRRFFCLFVTEDLVFISLLWL--IELLQNGPEVYNMLEKIQKNTDIWTSEFD 102 (241)
T ss_pred HHHHhhcceeEEeccCCcC--cCCcccccceeeccccccchheeecchh--hHHHhccchHHHHHHHHHhheeeeeEecH
Confidence 5555555555555554432 2223344444443322222222222222 33344333556777888888898887665
Q ss_pred cCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEe
Q 004828 315 PKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH 394 (728)
Q Consensus 315 p~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD 394 (728)
... -..+++|+|+.+.+..+...+.-....++++++-+++...++|+..+++|++..|++.+ +..+...--.+.|
T Consensus 103 ~~~-~~i~~~~~~i~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~n~~~~~~~~~l~~~----~~~~~~~~~~~~d 177 (241)
T KOG3845|consen 103 SFN-VDIFRPRVFIDSGSVFRLEHMINIPVTTCVSRAFLSAKVILVRGYNHPCGVFCVPLPIE----PFILAWLREWFLD 177 (241)
T ss_pred hhh-hhcccccccCCcceEeehhhccccccceeccchhhcccceeeeccCCcceEEEEEcCCc----chhHHHHHHHHhh
Confidence 533 35789999999999998877767777899999999999999999999999999999973 2333333345778
Q ss_pred cCCcc
Q 004828 395 SSGWC 399 (728)
Q Consensus 395 ~KGwl 399 (728)
.+|..
T Consensus 178 ~rg~~ 182 (241)
T KOG3845|consen 178 LRGLP 182 (241)
T ss_pred cccCC
Confidence 88887
No 84
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=93.64 E-value=0.12 Score=56.83 Aligned_cols=101 Identities=19% Similarity=0.320 Sum_probs=67.0
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEe--CceeeeeccCCCCC-CCCCcceeeeecC-ceeEeeccceeeeCceEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIR--GKYVEMYKRDPHEN-PGIKPIRRGVIGP-TLMVEELGRRRFNHGDVYV 119 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~--~~~~~~yK~~p~~~-~~~~pir~~~i~~-~~rv~d~Gr~~~~~~~~yv 119 (728)
..++.|||+-.-|-. =+.+ |.|||+|. |.++ =||.+|++. |...|+---.|-. -+|-.|+-|-. ++.|
T Consensus 13 ~~vvkEgWlhKrGE~--IknW-RpRYF~l~~DG~~~-Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPn----tFii 84 (516)
T KOG0690|consen 13 EDVVKEGWLHKRGEH--IKNW-RPRYFLLFNDGTLL-GYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPN----TFII 84 (516)
T ss_pred hhhHHhhhHhhcchh--hhcc-cceEEEEeeCCceE-eeccCCccCCCCcccccchhhhhhhhhhccCCCCc----eEEE
Confidence 456699999764322 1334 89999996 4444 689999774 4457777665544 45666666543 4444
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
=|+-=+.- =--++.+.|+||-..|++||+.+..
T Consensus 85 RcLQWTTV--IERTF~ves~~eRq~W~~AIq~vsn 117 (516)
T KOG0690|consen 85 RCLQWTTV--IERTFYVESAEERQEWIEAIQAVSN 117 (516)
T ss_pred Eeeeeeee--eeeeeecCCHHHHHHHHHHHHHHhh
Confidence 44421111 0127889999999999999998876
No 85
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.74 E-value=0.48 Score=44.86 Aligned_cols=88 Identities=17% Similarity=0.119 Sum_probs=62.1
Q ss_pred ceeeeEEEeCceeeeeccCCCCC-CCCCcceeeeecCceeEeeccceeee---CceEEEEEEEeccCcCcceeeeccCHH
Q 004828 65 CHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFN---HGDVYVMRLYNRLDESKKGEIACATAG 140 (728)
Q Consensus 65 ~~~Ryfvl~~~~~~~yK~~p~~~-~~~~pir~~~i~~~~rv~d~Gr~~~~---~~~~yv~~~yn~~~~~~~~~~~a~~~e 140 (728)
.+.||.+|=.+.+=.=|+.-..- -.+--.|..+.-..++|+++...-.- ++--|.|-|-.+ +....++|.|.|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Ktee 98 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKTEH 98 (116)
T ss_pred CceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCCHH
Confidence 56899999999888888653210 02345677777788888887422222 234455555554 33456899999999
Q ss_pred HHHHHHHHHHHHH
Q 004828 141 EARKWMEAFDQAK 153 (728)
Q Consensus 141 ea~~W~~a~~~a~ 153 (728)
|-.+||++|+.|+
T Consensus 99 ~K~kWm~al~~a~ 111 (116)
T cd01223 99 LRKKWLKALEMAM 111 (116)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999997
No 86
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=92.36 E-value=1 Score=41.76 Aligned_cols=93 Identities=16% Similarity=0.123 Sum_probs=57.8
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC----CCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN----PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~----~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
.+||=|..+-+. =+..|||+|=+..|=|=+..+..+ ....|+.. +.|++.-= ...+-..|.|
T Consensus 5 i~eG~L~K~~rk-----~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~------~~v~~~~d---~~~~~n~f~I 70 (104)
T cd01218 5 VGEGVLTKMCRK-----KPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEG------VQVESIED---DGIERNGWII 70 (104)
T ss_pred EecCcEEEeecC-----CCceEEEEEecCEEEEEEeecCCceeeEeeEEEccc------eEEEecCC---cccccceEEE
Confidence 467777665522 235689999888885533322211 12344443 34433211 0123355777
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
.++ .+-..+.|.|++|-..|+++|++||++.
T Consensus 71 ~~~---~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 71 KTP---TKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred ecC---CeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 775 5688999999999999999999999754
No 87
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=92.30 E-value=3.2 Score=39.41 Aligned_cols=139 Identities=13% Similarity=-0.021 Sum_probs=67.8
Q ss_pred EEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEE-c-CCCe
Q 004828 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFR-G-QDGT 340 (728)
Q Consensus 263 a~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr-~-~DGs 340 (728)
....|++||+.||++|.|... -..|.+. ++.++.+++++-..-...+. +.++ ..|-.--.+.. . ....
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~--~~~~~pg---~~~~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~~~ 72 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIER--VAPCLPG---ASLTEVEGDDEYKGTVKVKL----GPIS-ASFKGTARLLEDDEAARR 72 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHH--HHhcCCC---ceeccccCCCeEEEEEEEEE----ccEE-EEEEEEEEEEeccCCCcE
Confidence 345799999999999999865 5567664 55555566554333323321 1121 12210001111 1 1111
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHH-H
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALL-S 419 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL-~ 419 (728)
+.+....- . ...-|.+++. .-|.+.| .+ ..|+|+|-.++++.|.+ +.....+-+...-+++ .
T Consensus 73 ~~~~~~g~---~-~~~~g~~~~~---~~~~l~~-~~------~gT~v~~~~~~~~~g~l---~~l~~~~v~~~~~~~~~~ 135 (146)
T cd07823 73 AVLEATGK---D-ARGQGTAEAT---VTLRLSP-AG------GGTRVTVDTDLALTGKL---AQFGRGGIGDVAGRLLAQ 135 (146)
T ss_pred EEEEEEEe---c-CCCcceEEEE---EEEEEEe-cC------CcEEEEEEEEEEEeeEh---HHhChhHHHHHHHHHHHH
Confidence 11111110 0 0001222222 2366777 32 46999999999999999 4333223333334433 3
Q ss_pred HHHHHHHHh
Q 004828 420 QVAGLKEYI 428 (728)
Q Consensus 420 ~Va~LRe~~ 428 (728)
.+++|++.+
T Consensus 136 ~~~~l~~~~ 144 (146)
T cd07823 136 FAANLEARL 144 (146)
T ss_pred HHHHHHHHh
Confidence 455565554
No 88
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=92.26 E-value=0.18 Score=46.81 Aligned_cols=99 Identities=16% Similarity=0.256 Sum_probs=60.7
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCce-----eeeeccCCCCCCCCCcceeeeecCceeEee--c-cceeeeCceEEE
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKY-----VEMYKRDPHENPGIKPIRRGVIGPTLMVEE--L-GRRRFNHGDVYV 119 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~-----~~~yK~~p~~~~~~~pir~~~i~~~~rv~d--~-Gr~~~~~~~~yv 119 (728)
++||||..|.+.+= .+ ++|||||.+-- +..|+.+-.+....+-+-.-.||=+=-... + |++.- |+.+
T Consensus 4 ~sGyL~k~Gg~~~K-kW-KKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~-gg~~-- 78 (117)
T cd01234 4 HCGYLYAIGKNVWK-KW-KKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQ-GGRH-- 78 (117)
T ss_pred eeEEEEeccchhhh-hh-heeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccc-cchh--
Confidence 89999998876653 33 89999999532 334554433221112222222221111111 1 22222 4443
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
++|...+.+.+.+|+.+..|---|+.|+=.|-
T Consensus 79 --ff~avkegd~~~fa~~de~~r~lwvqa~yrat 110 (117)
T cd01234 79 --FFNAVKEGDELKFATDDENERHLWVQAMYRAT 110 (117)
T ss_pred --hhheeccCcEEEEeccchHHHHHHHHHHHHHc
Confidence 36888899999999999999999999998873
No 89
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=91.83 E-value=7.2 Score=35.70 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=33.0
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEee
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 302 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~l 302 (728)
+.....|+||+++||+++.|... .++|.+.+..++++...
T Consensus 3 ~~~~~~i~Ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~~~~~ 42 (138)
T cd08862 3 FEATIVIDAPPERVWAVLTDVEN--WPAWTPSVETVRLEGPP 42 (138)
T ss_pred EEEEEEEcCCHHHHHHHHHhhhh--cccccCcceEEEEecCC
Confidence 44566899999999999999876 78999988877776544
No 90
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=90.66 E-value=8.8 Score=36.37 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=31.3
Q ss_pred EEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEE
Q 004828 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (728)
Q Consensus 263 a~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE 300 (728)
.+..|++||++||++|.|... -++|.+.+.++++++
T Consensus 5 ~~~~i~ap~e~Vw~~~tD~~~--~~~w~~~v~~~~~~~ 40 (146)
T cd07824 5 TVWRIPAPPEAVWDVLVDAES--WPDWWPGVERVVELE 40 (146)
T ss_pred EEEEecCCHHHHHHHHhChhh--cchhhhceEEEEEcc
Confidence 345899999999999999976 789999988888876
No 91
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.54 E-value=3.4 Score=39.51 Aligned_cols=106 Identities=12% Similarity=0.148 Sum_probs=73.6
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCC--CCCCCcceeeee-cCceeEeecc----ceeeeCceEE
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHE--NPGIKPIRRGVI-GPTLMVEELG----RRRFNHGDVY 118 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~--~~~~~pir~~~i-~~~~rv~d~G----r~~~~~~~~y 118 (728)
..|||||=.=..+++.+.+ -++|.|+.+.-+..|-..+.. .|...|.-.+-+ |+-..|.-.. ...-....=|
T Consensus 2 t~~EGwvkvP~~~~~krGW-~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~ 80 (122)
T cd01243 2 TAYEGHVKIPKPGGVKKGW-QRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPC 80 (122)
T ss_pred ccceeeEeccCCCCcccCc-eEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCe
Confidence 4699999876666777777 788999999999999865532 344566666666 6666664211 1111223348
Q ss_pred EEEEEecc----CcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 119 VMRLYNRL----DESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 119 v~~~yn~~----~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
||+|--.- -....+-|=|.|..|-.+|..++++.
T Consensus 81 If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 81 IFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 99987643 22355677899999999999999986
No 92
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.98 E-value=2 Score=40.38 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=61.1
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCC--CCCC----CCcceeeeecCceeEeeccceeeeCceEEEE
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPH--ENPG----IKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~--~~~~----~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~ 120 (728)
.+||=+-.+.+.+ .=.+.|||+|=+..|=|=|++.. +-|+ .-=+|.-+-=..+.|.|+.= +..+-+-|
T Consensus 5 I~EG~L~ki~~~~---~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~knaF 78 (112)
T cd01261 5 IMEGTLTRVGPSK---KAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKNAF 78 (112)
T ss_pred cccCcEEEEeccc---CCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCceE
Confidence 4788887776544 22458999999999978786543 1111 11122222222333333210 11223456
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.|.++. .+-..+-|.|+||-..||++|..++
T Consensus 79 ~I~~~~--~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 79 EIILKD--GNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred EEEcCC--CCEEEEEECCHHHHHHHHHHHHHHh
Confidence 666653 3468999999999999999999987
No 93
>PF15408 PH_7: Pleckstrin homology domain
Probab=89.95 E-value=0.23 Score=44.59 Aligned_cols=92 Identities=16% Similarity=0.300 Sum_probs=61.8
Q ss_pred eeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeee--CceEEEEEEEecc
Q 004828 49 FGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFN--HGDVYVMRLYNRL 126 (728)
Q Consensus 49 eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~--~~~~yv~~~yn~~ 126 (728)
||.+|+.....| ++||.||.|+++-||-.|.-..-..--+|+-++.. -+| +|-+..- |=.-|-|-.|..
T Consensus 1 EGYLY~~E~~si-----~rRF~~L~~K~~~~~~~KGG~~L~sF~L~~s~~s~-Pm~--~~~~A~~N~Gi~A~G~L~~~~- 71 (104)
T PF15408_consen 1 EGYLYRDEDSSI-----QRRFVMLRSKQFNMYEDKGGQYLCSFQLSSSVVSH-PMV--NFSQAVPNLGINAFGFLMYSP- 71 (104)
T ss_pred CCeEEEeccchH-----HHHHHhhhhceeEEecccCCceeeeeehhhhhhhc-ccc--cccccCCCCCeeEEEEEEecC-
Confidence 799999887776 78999999999999988764432333344444322 222 2444433 233344545554
Q ss_pred CcCcceeeeccCHHHHHHHHHHHH
Q 004828 127 DESKKGEIACATAGEARKWMEAFD 150 (728)
Q Consensus 127 ~~~~~~~~~a~~~eea~~W~~a~~ 150 (728)
...++++=|.|.|--.+|+.++.
T Consensus 72 -~~~~~~~FA~S~~~~~~Wi~~mN 94 (104)
T PF15408_consen 72 -SRRHVQCFASSKKVCQSWIQVMN 94 (104)
T ss_pred -CcchhhhhhhHHHHHHHHHHHhc
Confidence 45778888999999999998874
No 94
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.88 E-value=2.6 Score=40.51 Aligned_cols=95 Identities=14% Similarity=0.230 Sum_probs=63.4
Q ss_pred eeeEEEEEcccccc-----cccceeeeEEEeCceeeeeccCCCCCCCCCcceeeee-----cCceeEeeccceee-----
Q 004828 48 YFGWVYHMGTNSIG-----HEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVI-----GPTLMVEELGRRRF----- 112 (728)
Q Consensus 48 ~eGw~y~~~~~~~g-----~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i-----~~~~rv~d~Gr~~~----- 112 (728)
..|++..+.-++.. +.-.+.|||+|=+.+|=|=|++..+ +-.| -..+.|++..-...
T Consensus 5 K~GEL~~l~~~~~~~~~~~k~~~~~vylfLFnDlLl~tkkK~~~--------~f~V~dy~~r~~l~V~~~e~~~~~~~~~ 76 (125)
T cd01221 5 KRGELTQLEERGSSNILRKKLKARTIYLFLFNDLLLITKKKLGS--------TFVVFDYAPRSFLRVEKIEPDNQKIPLG 76 (125)
T ss_pred EEeeEEEEeccCCcchhcccccCCcEEEEEecceEEEEEecCCC--------eEEEEeeccccceEEeeccccccccccc
Confidence 46777777654332 2224678999999999888876522 2333 34556665433222
Q ss_pred ----eCceEEEEEE-EeccCcCcceeeeccCHHHHHHHHHHHH
Q 004828 113 ----NHGDVYVMRL-YNRLDESKKGEIACATAGEARKWMEAFD 150 (728)
Q Consensus 113 ----~~~~~yv~~~-yn~~~~~~~~~~~a~~~eea~~W~~a~~ 150 (728)
...-+|.+++ -|...+...+.|-|.|.+|-.+||.||.
T Consensus 77 ~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 77 SNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred ccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 3444555554 4556778889999999999999999984
No 95
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=89.53 E-value=15 Score=34.55 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=30.9
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEE
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVD 300 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE 300 (728)
++...+|++|+++||++|.|... -++|++.+...+.++
T Consensus 4 ~~~s~~I~ap~e~V~~~i~D~~~--~~~W~p~~~~~~~~~ 41 (150)
T cd07818 4 VERSIVINAPPEEVFPYVNDLKN--WPEWSPWEKLDPDMK 41 (150)
T ss_pred EEEEEEEeCCHHHHHHHHhCccc--CcccCchhhcCcceE
Confidence 45566899999999999999976 889999877655544
No 96
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=88.99 E-value=18 Score=32.91 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=27.9
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEE
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLEL 298 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eV 298 (728)
....+|++|+++||+.|.|... ...|.+.+..++.
T Consensus 3 ~~~~~i~ap~~~Vw~~~~d~~~--~~~w~~~~~~~~~ 37 (141)
T cd07822 3 STEIEINAPPEKVWEVLTDFPS--YPEWNPFVRSATG 37 (141)
T ss_pred EEEEEecCCHHHHHHHHhcccc--ccccChhheeEec
Confidence 4566899999999999999876 7889876655443
No 97
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=88.68 E-value=1.1 Score=51.21 Aligned_cols=99 Identities=17% Similarity=0.333 Sum_probs=63.1
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeee-ccCCCCCCCC--CcceeeeecCceeEeeccceeeeCceEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMY-KRDPHENPGI--KPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~y-K~~p~~~~~~--~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~ 120 (728)
+...++||++.++... . .++|||.|.+..+.+. +.+|... +. .++...-|...|=|... ....+ =++|
T Consensus 375 sDv~~~G~l~k~~~~~---~-wk~ry~~l~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~v~pv~~~--~~~~~--~~~~ 445 (478)
T PTZ00267 375 SDVTHGGYLYKYSSDM---R-WKKRYFYIGNGQLRISLSENPEND-GVAPKSVNLETVNDVFPVPEV--YSQKH--PNQL 445 (478)
T ss_pred CCcccceEEeccCCCc---c-hhhheEEecCCceEEEeccccccC-CCCCccccHHHhcccccccHH--hcCCC--CceE
Confidence 4567999999987643 3 4899999998777775 4455432 22 33332225555544100 01112 2445
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.|.++. .+++=+-|.|.+|-..||++|++|+
T Consensus 446 ~i~~~~--~~~~~~~~~~~~~~~~W~~~~~~~~ 476 (478)
T PTZ00267 446 VLWFNN--GQKIIAYAKTAEDRDQWISKFQRAC 476 (478)
T ss_pred EEEecC--CcEEEEecCChHHHHHHHHHHHHHh
Confidence 565544 4477788899999999999999985
No 98
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.92 E-value=4.6 Score=37.05 Aligned_cols=91 Identities=16% Similarity=0.138 Sum_probs=64.9
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEecc
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRL 126 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~ 126 (728)
.+||=+...+. .+.||++|=.+.|=+=|+.. . .-=.|+-+.=.+.+|+|+=- +. -.-|.|....
T Consensus 5 lleg~l~~~~~-------~~eR~vFLFe~~ll~~K~~~--~--~y~~K~~i~~~~l~i~e~~~----~d-~~~F~v~~~~ 68 (97)
T cd01222 5 LLEGRFREHGG-------GKPRLLFLFQTMLLIAKPRG--D--KYQFKAYIPCKNLMLVEHLP----GE-PLCFRVIPFD 68 (97)
T ss_pred eeeceEEeecC-------CCceEEEEecccEEEEEecC--C--eeEEEEEEEecceEEecCCC----CC-CcEEEEEecC
Confidence 45666654333 45699999888887777544 2 45677777777888876421 22 3566665555
Q ss_pred CcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 127 DESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 127 ~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
....++.+-|.|.|+-..|+++|+.|+
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 545799999999999999999999997
No 99
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=86.19 E-value=2.4 Score=40.00 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=67.7
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE-Eec
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL-YNR 125 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~-yn~ 125 (728)
++|||+|. ..-|..==.+|||||+..=|.|+-+.-..+|+..--=...=+.|+-..=.|++.+..-.=|-|+| -++
T Consensus 1 e~~g~Lyl---K~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~ 77 (114)
T cd01259 1 EMEGPLYL---KADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVG 77 (114)
T ss_pred CccceEEE---ccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccc
Confidence 36899998 23355445999999999999776544333332111112233456666667888888888888888 333
Q ss_pred c-Cc-Cccee-eeccCHHHHHHHHHHHHHHH
Q 004828 126 L-DE-SKKGE-IACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 126 ~-~~-~~~~~-~~a~~~eea~~W~~a~~~a~ 153 (728)
. .. ++-|+ |-|.+.+.=..|+.||+-|+
T Consensus 78 ~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 78 DQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred cCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 3 22 46665 45566666778999999886
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=85.03 E-value=7.9 Score=36.56 Aligned_cols=94 Identities=10% Similarity=0.299 Sum_probs=63.1
Q ss_pred eeeeEEEEEccccc--ccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeee-Cc--------
Q 004828 47 EYFGWVYHMGTNSI--GHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFN-HG-------- 115 (728)
Q Consensus 47 ~~eGw~y~~~~~~~--g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~-~~-------- 115 (728)
.|||||=.=..+.. ...+ .++|.|+.+.-+..|-...... ..-| +.++| . ++.+| +.
T Consensus 1 ~lEGwlsvP~~~~~~~k~gW-~r~yvVv~~~Kl~lYd~e~~~~-~~~p--~~vld-------l-~~~fhv~~V~asDVi~ 68 (112)
T cd01242 1 RMEGWLSLPNRTNKSRKPGW-KKQYVVVSSRKILFYNDEQDKE-NSTP--SMILD-------I-DKLFHVRPVTQGDVYR 68 (112)
T ss_pred CcceeEEccCCCCccccCCc-eEEEEEEeCCEEEEEecCcccc-CCCc--EEEEE-------c-cceeeeecccHHHeee
Confidence 48999976444344 2345 6789999999999998544332 1223 23333 2 23555 22
Q ss_pred -----eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 116 -----DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 116 -----~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.=|||+|--. +++..+-|=|.|.+|-.+|..++..-|
T Consensus 69 a~~kDiP~IF~I~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~ 110 (112)
T cd01242 69 ADAKEIPKIFQILYA-NEARDLLLLAPQTDEQNKWVSRLVKKI 110 (112)
T ss_pred cCcccCCeEEEEEeC-CccceEEEEeCCchHHHHHHHHHHHhc
Confidence 2388988664 446788888999999999999987654
No 101
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=84.56 E-value=31 Score=32.87 Aligned_cols=111 Identities=12% Similarity=-0.054 Sum_probs=64.1
Q ss_pred EEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEE
Q 004828 264 VGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTI 343 (728)
Q Consensus 264 ~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvI 343 (728)
...|++++++||+.|.|+ ..|=.++..++.+|.++++.. .-...+ . ++++.+=-..++.-...+...+.+
T Consensus 2 s~~v~a~~~~vw~~l~D~-----~~l~~ciPG~~~~e~~~~~~~-~~~~v~--v--G~i~~~~~g~~~~~~~~~~~~~~~ 71 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDP-----ENLARCIPGVESIEKVGDEYK-GKVKVK--V--GPIKGTFDGEVRITEIDPPESYTL 71 (140)
T ss_dssp EEEECS-HHHHHHHHT-H-----HHHHHHSTTEEEEEEECTEEE-EEEEEE--S--CCCEEEEEEEEEEEEEETTTEEEE
T ss_pred cEEecCCHHHHHHHhcCH-----HHHHhhCCCcEEeeecCcEEE-EEEEEE--e--ccEEEEEEEEEEEEEcCCCcceEe
Confidence 347899999999999985 367889999999999994332 222232 1 234433234444444444445543
Q ss_pred EEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 344 LQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 344 a~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
-..--.. .+...+.... .+...+. .. |.|+|-..++..|.+
T Consensus 72 ~~~g~g~------~~~~~~~~~~---~~~~~~~-----~~-T~v~~~~~~~~~G~l 112 (140)
T PF06240_consen 72 EFEGRGR------GGGSSASANI---TLSLEDD-----GG-TRVTWSADVEVGGPL 112 (140)
T ss_dssp EEEEEEC------TCCEEEEEEE---EEEECCC-----TC-EEEEEEEEEEEECHH
T ss_pred eeeccCC------ccceEEEEEE---EEEcCCC-----CC-cEEEEEEEEEEccCH
Confidence 3332211 1223333221 1233222 24 999999999999999
No 102
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=84.29 E-value=2.2 Score=50.92 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=71.8
Q ss_pred CCCcceeeeEEEEE--cccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEE
Q 004828 42 EKGYFEYFGWVYHM--GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYV 119 (728)
Q Consensus 42 ~~~~~~~eGw~y~~--~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv 119 (728)
.+..+--||-|++. |+-++|...+.||||-|-+.-|.|=| .|... |+=+..+-.=.-||..--+++.++-++-
T Consensus 561 ~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~K-sp~~q----~~~~Ipl~nI~avEklee~sF~~knv~q 635 (800)
T KOG2059|consen 561 QEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAK-SPGKQ----PIYTIPLSNIRAVEKLEEKSFKMKNVFQ 635 (800)
T ss_pred CCCceecccceEeccccccchhhhhhhheEEEeccceeEEec-CCccC----cccceeHHHHHHHHHhhhhccCCCceEE
Confidence 33455589999987 66789977779999999999998877 44333 4444444333335545555666654332
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
. ||+. +.+-+-|.+.-||..|..+++.+..
T Consensus 636 V-V~~d----rtly~Q~~n~vEandWldaL~kvs~ 665 (800)
T KOG2059|consen 636 V-VHTD----RTLYVQAKNCVEANDWLDALRKVSC 665 (800)
T ss_pred E-EecC----cceeEecCCchHHHHHHHHHHHHhc
Confidence 1 3443 5888899999999999999988764
No 103
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=82.77 E-value=1.1 Score=54.91 Aligned_cols=96 Identities=15% Similarity=0.282 Sum_probs=66.4
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeC--ceeeeeccCCCCCCCCCcceeeeecCc--eeEeeccceeeeCceEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPT--LMVEELGRRRFNHGDVYV 119 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~--~~~~~yK~~p~~~~~~~pir~~~i~~~--~rv~d~Gr~~~~~~~~yv 119 (728)
....+||.+|.-|. +-.-| ..|||||.. ..|+||..--...| +|+||-- --|+-.|-|++-.+-||=
T Consensus 1632 eNr~~eG~LyKrGA--~lK~W-k~RwFVLd~~khqlrYYd~~edt~p------kG~IdLaevesv~~~~~k~vdekgffd 1702 (1732)
T KOG1090|consen 1632 ENRIPEGYLYKRGA--KLKLW-KPRWFVLDPDKHQLRYYDDFEDTKP------KGCIDLAEVESVALIGPKTVDEKGFFD 1702 (1732)
T ss_pred cccCcccchhhcch--hhccc-ccceeEecCCccceeeecccccccc------cchhhhhhhhhhcccCccccCccceee
Confidence 34448999998543 44444 899999975 68899975543332 4555521 123346678888888876
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
+..-| +-..|-|.|+-+|..|+++|+.|+
T Consensus 1703 lktt~-----rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1703 LKTTN-----RVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eehhh-----HHHHHHhccchHHHHHHHHHHHhh
Confidence 65433 344678999999999999999986
No 104
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=79.50 E-value=16 Score=34.25 Aligned_cols=94 Identities=12% Similarity=0.163 Sum_probs=56.7
Q ss_pred eeeEEEEEcccccccccceeeeEEEe--CceeeeeccCCCCC---CC--CCcceeeeecCce-eEeeccceeeeCceEEE
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIR--GKYVEMYKRDPHEN---PG--IKPIRRGVIGPTL-MVEELGRRRFNHGDVYV 119 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~--~~~~~~yK~~p~~~---~~--~~pir~~~i~~~~-rv~d~Gr~~~~~~~~yv 119 (728)
++||||.-..+++|-++- +.|+..+ ++.+.|---.|.+. ++ ..+.+-+ |+.|+ |-.|. -.-=|-
T Consensus 1 k~GYLy~~~k~~~~~~Wv-k~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~-l~sc~~r~~~~------~dRRFC 72 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWT-KYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLT-LKSCSRRKTES------IDKRFC 72 (104)
T ss_pred CCceEEEEcCCCCCCeEE-EEEEEEEcCCcEEEEEecccccccccCcccccceEEe-eeeccccccCC------ccceee
Confidence 589999999889988886 4444433 34555543334321 01 1222222 22222 22221 123377
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFD 150 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~ 150 (728)
|.|-.+..+ ..++|=|.|..|-..||+|+.
T Consensus 73 Fei~~~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 73 FDVEVEEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred EeeeecCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 888776665 569999999999999999985
No 105
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=79.32 E-value=53 Score=30.42 Aligned_cols=29 Identities=31% Similarity=0.373 Sum_probs=24.6
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCC
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~ 292 (728)
.....|++||++||++|.|... .++|++.
T Consensus 3 ~~~~~i~ap~e~Vw~~l~d~~~--~~~W~~~ 31 (144)
T cd07825 3 SVSRTVDAPAEAVFAVLADPRR--HPEIDGS 31 (144)
T ss_pred EEEEEEeCCHHHHHHHHhCccc--cceeCCC
Confidence 3455889999999999999976 8999964
No 106
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=78.25 E-value=5.3 Score=37.20 Aligned_cols=89 Identities=20% Similarity=0.299 Sum_probs=51.9
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCc-eeeeeccCCCCC--CCCCcceeeeecCceeEeeccceeeeCceEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK-YVEMYKRDPHEN--PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~-~~~~yK~~p~~~--~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~ 120 (728)
....++|-+..- =|+ |.++|-|+|.+. .|-|+. |... .+++| +...++|+ ..+.+.|+|-
T Consensus 11 e~Il~~g~v~K~----kgl-~~kkR~liLTd~PrL~Yvd--p~~~~~KGeI~-----~~~~l~v~-----~k~~~~F~I~ 73 (104)
T PF14593_consen 11 ELILKQGYVKKR----KGL-FAKKRQLILTDGPRLFYVD--PKKMVLKGEIP-----WSKELSVE-----VKSFKTFFIH 73 (104)
T ss_dssp --EEEEEEEEEE----ETT-EEEEEEEEEETTTEEEEEE--TTTTEEEEEE-------STT-EEE-----ECSSSEEEEE
T ss_pred CeEEEEEEEEEe----ece-EEEEEEEEEccCCEEEEEE--CCCCeECcEEe-----cCCceEEE-----EccCCEEEEE
Confidence 445689988873 233 379999999988 666664 4332 13333 34677887 5555555543
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
+ + .+..-|-. ....|..|.++|+++..++
T Consensus 74 t---p---~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 74 T---P---KRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp E---T---TEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred C---C---CcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 2 1 22222322 4566999999999998543
No 107
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.71 E-value=7.5 Score=36.69 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=59.2
Q ss_pred cccceeeeEEEeCceeeeeccCCCCC----CCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccCcCcceeeecc
Q 004828 62 HEYCHLRFLFIRGKYVEMYKRDPHEN----PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACA 137 (728)
Q Consensus 62 ~~~~~~Ryfvl~~~~~~~yK~~p~~~----~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~a~ 137 (728)
-+=.+.|||||=...|-+....|... -+..|++.+.|-.=...+ +.-+.|.|--+. -+.|.+-|.
T Consensus 25 ~qe~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e---------~~~~aFeI~G~l--i~~i~v~C~ 93 (111)
T cd01225 25 GEEKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTE---------ALKNAFEISGPL--IERIVVVCN 93 (111)
T ss_pred ccccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhcc---------CccceEEEeccC--cCcEEEEeC
Confidence 34468999999999999999999553 157899888876422222 114566665444 367888899
Q ss_pred CHHHHHHHHHHHHHH
Q 004828 138 TAGEARKWMEAFDQA 152 (728)
Q Consensus 138 ~~eea~~W~~a~~~a 152 (728)
|.+|..+|++-|+.-
T Consensus 94 ~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 94 NPQDAQEWVELLNAN 108 (111)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998763
No 108
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=74.67 E-value=84 Score=30.30 Aligned_cols=119 Identities=12% Similarity=0.040 Sum_probs=70.8
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
+..+..|++|++++|+++.+........|-+.+.++++++-=++.-.|-...+.+. . .++ .+.-|-- ..++..
T Consensus 3 ~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~GsvR~~~~~~~----~-~~~-~~kE~l~-~~D~~~ 75 (148)
T cd07816 3 LEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGSIKLITFGPG----G-KVK-YVKERID-AVDEEN 75 (148)
T ss_pred EEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCceEEEEEEcCC----C-cce-EEEEEEE-EEcccc
Confidence 44566899999999999999862024578888899988864233334555544331 1 111 1211111 123445
Q ss_pred EEEEEeeccCCCCC-CCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCc
Q 004828 341 YTILQFPAVHKKRP-PKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGW 398 (728)
Q Consensus 341 YvIa~~SV~Hp~~P-p~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGw 398 (728)
..+.++-++-+-.. +- ....+-+-+.|.+. ++|.++|.+..++..-
T Consensus 76 ~~~~y~vveg~~~~~~~------~~y~~t~~v~~~~~------~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 76 KTYKYTVIEGDVLKDGY------KSYKVEIKFVPKGD------GGCVVKWTIEYEKKGD 122 (148)
T ss_pred cEEEEEEEecccccCce------EEEEEEEEEEECCC------CCEEEEEEEEEEECCC
Confidence 66666555432211 11 23456677888743 5799999999987654
No 109
>PLN02866 phospholipase D
Probab=68.51 E-value=17 Score=45.75 Aligned_cols=79 Identities=11% Similarity=0.301 Sum_probs=54.3
Q ss_pred eeeeEEEeCceeeeeccCCCCCCCCCcceeeeecC----------ceeEeeccceeeeCceEEEEEEEeccCcCcceeee
Q 004828 66 HLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGP----------TLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIA 135 (728)
Q Consensus 66 ~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~----------~~rv~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~ 135 (728)
.||||||+..+|.|.+ +|.+. .|.-=.++|. .+.+....-|+ ...=|-|+|-| -+++++|=
T Consensus 219 ~k~w~v~k~~~l~~~~-~p~~~---~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~--~~~~~~~~i~~---~~r~l~l~ 289 (1068)
T PLN02866 219 QKVWAVLKPGFLALLE-DPFDA---KPLDIIVFDVLPASNGNGEGQISLAKEIKER--NPLRFGFKVTC---GNRSIRLR 289 (1068)
T ss_pred heeEEEEeccEEEEEe-cCCCC---ceeEEEEEecccccccCCCcceeeccccccc--CCCcceEEEec---CceEEEEE
Confidence 5799999999998865 56544 3666677773 22332222111 12234566644 36679999
Q ss_pred ccCHHHHHHHHHHHHHHH
Q 004828 136 CATAGEARKWMEAFDQAK 153 (728)
Q Consensus 136 a~~~eea~~W~~a~~~a~ 153 (728)
|.|..+|..|+.+|+++.
T Consensus 290 ~~s~~~~~~w~~ai~~~~ 307 (1068)
T PLN02866 290 TKSSAKVKDWVAAINDAG 307 (1068)
T ss_pred ECCHHHHHHHHHHHHHHH
Confidence 999999999999999996
No 110
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=68.32 E-value=37 Score=32.13 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=60.8
Q ss_pred ccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccCc--CcceeeeccCHH
Q 004828 63 EYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDE--SKKGEIACATAG 140 (728)
Q Consensus 63 ~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~~--~~~~~~~a~~~e 140 (728)
.=.+.|.++|=...|=+=|..........| +-+.-..+.+.+.|.+-+-++.=.=|.|+.+... .+...+=|.|+|
T Consensus 22 ~K~~eR~vFLFe~~lvfsk~~~~~~~~~~~--~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e 99 (114)
T cd01232 22 QKGRERRVFLFEQSIIFAKEVKKKKQFGNP--KYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQE 99 (114)
T ss_pred CCCceeEEEEeeceEEEEEEeccCCCCCce--eEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHH
Confidence 345678888877776555543221100122 2334455667777776666666677888887764 578889999999
Q ss_pred HHHHHHHHHHHHHH
Q 004828 141 EARKWMEAFDQAKQ 154 (728)
Q Consensus 141 ea~~W~~a~~~a~~ 154 (728)
+-..|+..|.++.+
T Consensus 100 ~K~~W~~~I~~il~ 113 (114)
T cd01232 100 TKQEWVKKIREILQ 113 (114)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999874
No 111
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.74 E-value=18 Score=44.88 Aligned_cols=114 Identities=17% Similarity=0.319 Sum_probs=84.4
Q ss_pred ccCCCCCcceeeeEEEEEcc-cccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCcee--EeeccceeeeC
Q 004828 38 VGDKEKGYFEYFGWVYHMGT-NSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEELGRRRFNH 114 (728)
Q Consensus 38 ~~~~~~~~~~~eGw~y~~~~-~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~r--v~d~Gr~~~~~ 114 (728)
+....+..++|-|.||.+.- ..+|- | |.|+-+|.|....|+| .|.|..+.+||-.+=.-.||+ ||.--|++--.
T Consensus 982 C~~~~~idVEYrGFLtmfed~sgfGa-W-hRyWc~L~gg~I~fWk-~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar 1058 (1116)
T KOG3640|consen 982 CSLPDAIDVEYRGFLTMFEDGSGFGA-W-HRYWCALHGGEIKFWK-YPDDEKRKVPIGQIDLTKCTSQSIEEARRDICAR 1058 (1116)
T ss_pred cccccccceeeeeeeeeeeccCCCch-h-hhhhHHhcCCeeeeec-CcchhcccCcceeeehhhhhccccccchhhhccC
Confidence 55566678889999998863 34554 4 9999999999999998 788877889997777777775 55544444433
Q ss_pred ceEEEEEEEeccCc---------CcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 115 GDVYVMRLYNRLDE---------SKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 115 ~~~yv~~~yn~~~~---------~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.-=|-+-++-++.. .-+.-|||.+.||-.-|+.+|-++..
T Consensus 1059 ~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1059 PNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred CceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 34445555555421 12678999999999999999999874
No 112
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=62.52 E-value=5.8 Score=46.50 Aligned_cols=38 Identities=11% Similarity=0.318 Sum_probs=24.7
Q ss_pred CCCCcceeeeEEEEEcccccccccceeeeEEEeCceeeeec
Q 004828 41 KEKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYK 81 (728)
Q Consensus 41 ~~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK 81 (728)
+..++...||||+||-..- .--.+-|.-|..|.+.+|.
T Consensus 408 Rksst~~kEGWmvHyt~~d---~lRkrHYWrldsk~itlfq 445 (888)
T KOG4236|consen 408 RKSSTKLKEGWMVHYTSKD---NLRKRHYWRLDSKCITLFQ 445 (888)
T ss_pred ccchhhhhcceEEEEechh---hhhhhhhheeccceeEeee
Confidence 3345566999999996543 2223447788888775543
No 113
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=61.32 E-value=93 Score=30.90 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=70.2
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCc----eEEEEEEeccCcCCCCCCCCeEEEEEEEEEc
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH----YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG 336 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~----TDIiY~~~kp~~~P~~vspRDFV~LRswRr~ 336 (728)
+.....|..+|+++|+++.|... -++.=+.+...+|+++=..+ .+|.|..++. -|-. |-..
T Consensus 4 ~~~s~lv~y~a~~mF~LV~dV~~--YP~FlP~C~~s~v~~~~~~~l~A~l~V~~k~i~e----------~F~T-rv~~-- 68 (146)
T COG2867 4 IERTALVPYSASQMFDLVNDVES--YPEFLPWCSASRVLERNERELIAELDVGFKGIRE----------TFTT-RVTL-- 68 (146)
T ss_pred eEeeeeccCCHHHHHHHHHHHHh--CchhccccccceEeccCcceeEEEEEEEhhheee----------eeee-eeee--
Confidence 44556889999999999999865 77888888888888875433 2232221111 1211 1111
Q ss_pred CCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 337 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 337 ~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
..+.-+|....+.-|= + -+-++|-+.|+.. ..|+|...+.-+.+..+
T Consensus 69 ~~~~~~I~~~l~~GPF---k-------~L~~~W~F~pl~~------~~ckV~f~ldfeF~s~l 115 (146)
T COG2867 69 KPTARSIDMKLIDGPF---K-------YLKGGWQFTPLSE------DACKVEFFLDFEFKSRL 115 (146)
T ss_pred cCchhhhhhhhhcCCh---h-------hhcCceEEEECCC------CceEEEEEEEeeehhHH
Confidence 1222255555443332 1 3678999999975 68999999999999888
No 114
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=52.55 E-value=1.6e+02 Score=29.36 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=31.7
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceE
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TD 307 (728)
.++-.|.+||++|++.|.|++. . -.++.-++-+++.++...
T Consensus 4 ~G~f~V~~p~e~Vw~~L~dpe~--~---a~ciPG~qs~e~~g~e~~ 44 (146)
T COG3427 4 EGTFRVAAPPEAVWEFLNDPEQ--V---AACIPGVQSVETNGDEYT 44 (146)
T ss_pred cceEEecCCHHHHHHHhcCHHH--H---HhhcCCcceeeecCCeEE
Confidence 4455799999999999999853 2 367888889999887533
No 115
>TIGR01599 PYST-A Plasmodium yoelii subtelomeric family PYST-A. A single high-scoring gene was identified in the complete genome of P. falciparum as well as a single gene from P. chaboudi from GenBank which were included in the seed. There are no obvious homologs to these genes in any non-Plasmodium organism. These observations suggest an expansion of this family in yoelii from a common Plasmodium ancestor gene (present in a single copy in falciparum).
Probab=51.40 E-value=2.5e+02 Score=29.45 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=76.8
Q ss_pred EEEEEEeecC--CHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcC
Q 004828 260 LVKAVGVIDA--SADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQ 337 (728)
Q Consensus 260 ~~Ka~gvVda--spe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~ 337 (728)
+-|..-.|.- .=.+|...|+|++. -...|..+..++++...+.+.-++.+..+... +-..|=|-.|..--...
T Consensus 60 I~K~~~~I~~pnkYneIIN~LWdpn~--~~~fn~~~ikgki~RvYnpNLvmiqqry~~~~---~~~~~YfyaLa~Kv~iS 134 (208)
T TIGR01599 60 IGKIHLTIQDPNKYDAIIKTLWDFND--NKKFGRKFIKGKVVRVYSPNLIMIQQRYKDAS---GSPNKYFYALATKVKVS 134 (208)
T ss_pred EEEEEEEecCchhHHHHHHHHhcccc--ccCCCchheeeeEEEEeCCCeEEEEeecCCCC---CCcceEEeEeeeeeecC
Confidence 4455556644 35778889999876 56789999999999999999999998887532 33445566666544445
Q ss_pred CCeEEEEEeeccCCCCCC--CCC--------------------------eeeEEEcCeeEEEEecCC
Q 004828 338 DGTYTILQFPAVHKKRPP--KSG--------------------------YRRTKINPSTWEIRSLNL 376 (728)
Q Consensus 338 DGsYvIa~~SV~Hp~~Pp--~~G--------------------------~VRAei~~sGylI~P~~~ 376 (728)
.+.-+|++.|..--++-+ .+. .-.-.+.++||+|..-.+
T Consensus 135 ed~TiIv~~S~~ind~n~~~~~~~~n~iv~san~f~~~idse~dir~g~l~k~fvNl~G~~IkK~~d 201 (208)
T TIGR01599 135 EDTTIIACTSANINDHNKVDKKNFKNKIIESANSFKTDIDSEEDIRNGELKKMFVNLSGFIIKKKDD 201 (208)
T ss_pred CCcEEEEEeccccccCCccccccccceeeeecccccCccCHHHHHHhhhhhheEEeeEEEEEEecCC
Confidence 567888888877444322 111 223356889999998653
No 116
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=51.00 E-value=35 Score=42.13 Aligned_cols=83 Identities=11% Similarity=0.246 Sum_probs=64.4
Q ss_pred ccccceeeeEEEeCceeeeeccCCCCC-CCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccCcCcceeeeccCH
Q 004828 61 GHEYCHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATA 139 (728)
Q Consensus 61 g~~~~~~Ryfvl~~~~~~~yK~~p~~~-~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~ 139 (728)
--.+++.|||+|.|..|..||..-... -.+-||.++.+=-++ +++..--..|-|++| .+ -++.-+-|.+.
T Consensus 1047 ~g~~fqdryfilng~~l~lyke~KssKhek~wpl~s~k~Y~Gv------kkklKpPt~wg~T~i--~e-khh~~l~cd~s 1117 (1186)
T KOG1117|consen 1047 SGNKFQDRYFILNGGCLFLYKEVKSSKHEKEWPLSSMKVYLGV------KKKLKPPTSWGFTAI--SE-KHHWYLCCDSS 1117 (1186)
T ss_pred cCCccceEEEEecCcEEEEeehhhccccccccccccceEEecc------ccccCCCCccceeee--ee-cceEEEecCCc
Confidence 345779999999999999999776443 248899988764332 245556678999999 33 34888999999
Q ss_pred HHHHHHHHHHHHH
Q 004828 140 GEARKWMEAFDQA 152 (728)
Q Consensus 140 eea~~W~~a~~~a 152 (728)
-|--.|+-.|--|
T Consensus 1118 ~~~~ewfts~fka 1130 (1186)
T KOG1117|consen 1118 SEQTEWFTSIFKA 1130 (1186)
T ss_pred cccchhhhhhhhh
Confidence 9999999999777
No 117
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=50.32 E-value=19 Score=33.73 Aligned_cols=38 Identities=13% Similarity=0.066 Sum_probs=32.5
Q ss_pred EEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEee
Q 004828 263 AVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSY 302 (728)
Q Consensus 263 a~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~l 302 (728)
....|++|+++||+++.|... -..|.+.+.+++++..-
T Consensus 3 ~s~~I~ap~e~V~~~~~d~~~--~~~~~p~~~~v~~~~~~ 40 (137)
T cd07820 3 RSTVIPAPIEEVFDFHSRPDN--LERLTPPWLEFAVLGRT 40 (137)
T ss_pred EEEEcCCCHHHHHHHHcCcch--HHhcCCCCCCeEEEecC
Confidence 345799999999999999976 88999999999988643
No 118
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=49.29 E-value=59 Score=30.07 Aligned_cols=94 Identities=15% Similarity=0.223 Sum_probs=49.4
Q ss_pred EEEEEcccccccccceeeeEEE--eCceeeeeccCCCCCC-----CCCcceeeeecCceeEeeccce--eeeCceEEEEE
Q 004828 51 WVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYKRDPHENP-----GIKPIRRGVIGPTLMVEELGRR--RFNHGDVYVMR 121 (728)
Q Consensus 51 w~y~~~~~~~g~~~~~~Ryfvl--~~~~~~~yK~~p~~~~-----~~~pir~~~i~~~~rv~d~Gr~--~~~~~~~yv~~ 121 (728)
.|.++.. ..-...|+|-| ++..|......+.+.. ...=||.|---.+-+......+ ..-.+- |+
T Consensus 11 ~~~K~~~----~~~~~~~~f~ld~~~~~l~W~~~~~~~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~---fT 83 (115)
T cd01248 11 VFIKWDD----TSRERRRLFRLDEKGFFLYWKDEGKKEKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERC---FT 83 (115)
T ss_pred EEEEEcC----CCceeeEEEEEcCCCcEEEEeCCCCccccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccE---EE
Confidence 4555544 22445688888 5777766544432110 1233455443333332211111 122222 23
Q ss_pred E-EeccCcCcceeeeccCHHHHHHHHHHHHH
Q 004828 122 L-YNRLDESKKGEIACATAGEARKWMEAFDQ 151 (728)
Q Consensus 122 ~-yn~~~~~~~~~~~a~~~eea~~W~~a~~~ 151 (728)
| |......+-+-|-|.|.++|..|.+.|+.
T Consensus 84 Iiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 84 IVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred EEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 2 33322355699999999999999998863
No 119
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=46.19 E-value=58 Score=29.75 Aligned_cols=75 Identities=23% Similarity=0.325 Sum_probs=42.0
Q ss_pred ccccccceeeeEEEeCc-eeeeeccCCCCC--CCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccCcCcceeee
Q 004828 59 SIGHEYCHLRFLFIRGK-YVEMYKRDPHEN--PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIA 135 (728)
Q Consensus 59 ~~g~~~~~~Ryfvl~~~-~~~~yK~~p~~~--~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~ 135 (728)
+-|+ |.|+|=|+|-+. .|-|+ +|... .+|+|+-+ -+++|+ ..+++.++|= + .++..-|-
T Consensus 10 r~gl-f~kkR~LiLTd~PrL~yv--dp~~~~~KgeIp~s~----~~l~v~-----~~~~~~F~I~----T--p~rty~le 71 (89)
T cd01262 10 RKGL-FAKKRQLILTNGPRLIYV--DPVKKVVKGEIPWSD----VELRVE-----VKNSSHFFVH----T--PNKVYSFE 71 (89)
T ss_pred hhcc-ccceeeEEEecCceEEEE--cCCcCeEEeEecccc----cceEEE-----EecCccEEEE----C--CCceEEEE
Confidence 4455 779999999653 33333 45432 14566554 256666 5566666551 1 11111111
Q ss_pred ccCHHHHHHHHHHHHHH
Q 004828 136 CATAGEARKWMEAFDQA 152 (728)
Q Consensus 136 a~~~eea~~W~~a~~~a 152 (728)
.-...|.+|.++|+++
T Consensus 72 -D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 72 -DPKGRASQWKKAIEDL 87 (89)
T ss_pred -CCCCCHHHHHHHHHHH
Confidence 1235789999999987
No 120
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=44.91 E-value=49 Score=39.24 Aligned_cols=96 Identities=17% Similarity=0.222 Sum_probs=60.6
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeec---cCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYK---RDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK---~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
-.||=++.+-.+ ..-.-.||+||=+..+-|-| +.|-.. -.+=-..-|++....++.-.+. ++.|++=.
T Consensus 273 iKEG~l~Kis~k---~~~~qeRylfLFNd~~lyc~~r~~~~~~k--~~~r~~~s~~~~~v~~~~~~~~--~~tF~~~G-- 343 (623)
T KOG4424|consen 273 IKEGQLQKISAK---NGTTQERYLFLFNDILLYCKPRKRLPGSK--YEVRARCSISHMQVQEDDNEEL--PHTFILTG-- 343 (623)
T ss_pred hhccceeeeecc---CCCcceeEEEEehhHHHhhhhhhhcccce--eccceeeccCcchhcccccccC--CceEEEec--
Confidence 379999988776 33447899999887665443 223222 1111122233444444322211 23444433
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQQ 155 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 155 (728)
+.+-++|.|.+.||-..|+.+|.+|||.
T Consensus 344 ----~~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 344 ----KKRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred ----ccceEEeecCchhhHHHHHHHHHHHHHH
Confidence 7889999999999999999999999993
No 121
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=44.86 E-value=2.1e+02 Score=27.87 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=62.1
Q ss_pred ceeeeEEEeCceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccCcCcceeeeccCHHHHH
Q 004828 65 CHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEAR 143 (728)
Q Consensus 65 ~~~Ryfvl~~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~ 143 (728)
++.|+++|=.+.+=.=|+...... ...| +-+-=.++++.+.|..-+-++.-.=|.||.+.. ...+.+=|.|+|.-.
T Consensus 29 ~~eRhVFLFE~~viF~K~~~~~~~~~~~p--~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~ 105 (133)
T cd01227 29 PMQRHIFLHEKAVLFCKKREENGEGEKAP--SYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKA 105 (133)
T ss_pred CceeEEEEecceEEEEEEeccCCCCCcce--eEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHH
Confidence 467999998888766665521110 1122 234445556666776665555666677888764 678999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 004828 144 KWMEAFDQAKQQAE 157 (728)
Q Consensus 144 ~W~~a~~~a~~~~~ 157 (728)
.|++.|.+.++++.
T Consensus 106 ~Wv~~I~~iL~~Q~ 119 (133)
T cd01227 106 AWVNEIRKVLTSQL 119 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998443
No 122
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=44.16 E-value=66 Score=30.29 Aligned_cols=99 Identities=14% Similarity=0.237 Sum_probs=56.6
Q ss_pred eEEEEE-cccccccccceeeeEEEeCceeeeeccCCCCCCC-CCcceee-eecCceeEeeccc--eeeeCceEEEEEEEe
Q 004828 50 GWVYHM-GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG-IKPIRRG-VIGPTLMVEELGR--RRFNHGDVYVMRLYN 124 (728)
Q Consensus 50 Gw~y~~-~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~-~~pir~~-~i~~~~rv~d~Gr--~~~~~~~~yv~~~yn 124 (728)
||+=-- ..+.++.+--+.||++|.|+-+-.|+..|.+.-+ ..|.++- +++--+||--.|. ....++. |.|+|=
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~-~~F~ir- 80 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRD-NCFLIR- 80 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCc-eEEEEE-
Confidence 565432 1123334555899999999999999999986411 2444432 2233334432221 1011222 334432
Q ss_pred ccCcC-cceeeeccCHHHHHHHHHHHHH
Q 004828 125 RLDES-KKGEIACATAGEARKWMEAFDQ 151 (728)
Q Consensus 125 ~~~~~-~~~~~~a~~~eea~~W~~a~~~ 151 (728)
..+- ..-.|...+.+|=+.|.+||.+
T Consensus 81 -tg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 81 -TGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred -cCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 2222 3446789999999999999975
No 123
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=42.31 E-value=2.6e+02 Score=25.24 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.0
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCC
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~ 292 (728)
....+|++||++||++|.|... -+.|.+.
T Consensus 3 ~~s~~I~a~~~~Vw~~l~d~~~--~~~w~~~ 31 (139)
T cd07814 3 TIEREFDAPPELVWRALTDPEL--LAQWFGP 31 (139)
T ss_pred EEEEEecCCHHHHHHHcCCHHH--HHhhhCc
Confidence 4456899999999999999865 6789775
No 124
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=36.10 E-value=1.1e+02 Score=36.01 Aligned_cols=109 Identities=10% Similarity=0.146 Sum_probs=78.8
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
...++|+|.+|.-+.-| ---.+=||||+..=|.|+-+--..+|+-.-.=..+=++|+-+-=-|||.+.--.=|-|||
T Consensus 314 ~~~pei~GfL~~K~dgk---KsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~ 390 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDGK---KSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCI 390 (622)
T ss_pred CCCccccceeeeccccc---ccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEe
Confidence 46778999999855444 334778999999999777555455554333334556778888888999999889999998
Q ss_pred Eecc--CcCcceeee-ccCHHHHHHHHHHHHHHHH
Q 004828 123 YNRL--DESKKGEIA-CATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 123 yn~~--~~~~~~~~~-a~~~eea~~W~~a~~~a~~ 154 (728)
==.+ ++.+.|+|= |.+.+.-..|+-||+-++-
T Consensus 391 K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 391 KPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred eeccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 6444 233567654 5667777899999998874
No 125
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=34.62 E-value=1.2e+02 Score=36.43 Aligned_cols=105 Identities=14% Similarity=0.179 Sum_probs=72.5
Q ss_pred cCCCCCcceeeeEEEEEcccccccccceeeeEEE--eCceeeeec--cCCCCCCCCCcceeeeecCceeEeeccceeeeC
Q 004828 39 GDKEKGYFEYFGWVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYK--RDPHENPGIKPIRRGVIGPTLMVEELGRRRFNH 114 (728)
Q Consensus 39 ~~~~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl--~~~~~~~yK--~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~ 114 (728)
-++.++...+||.+|--...+||.+| -|-|-+- |.+.++|-- .+|... +-|.-+.+.-.|.|= --+++-.
T Consensus 258 e~k~p~p~t~eGYlY~QEK~~~g~sW-vKyYC~Y~retk~~TMvp~~qk~g~k--~g~~~~~~lKsC~RR---ktdSIdK 331 (812)
T KOG1451|consen 258 EDKRPTPSTKEGYLYMQEKSKIGKSW-VKYYCVYSRETKIFTMVPANQKTGTK--MGQTATFKLKSCSRR---KTDSIDK 331 (812)
T ss_pred cccCCCCcccceeeeehhhhhccchh-hhheeEeecccceEEEeecccCCCCc--CCCcceEEehhhccC---ccccccc
Confidence 34667788899999999999999998 4556554 456666632 233333 557777777777762 2223333
Q ss_pred ceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 115 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 115 ~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
+ |-|-|- ..+...-|+|-|-|.++-.-||+|..-+
T Consensus 332 R--FCFDve-~~erpgviTmQALSE~drrlWmeAMDG~ 366 (812)
T KOG1451|consen 332 R--FCFDVE-VEERPGVITMQALSEKDRRLWMEAMDGA 366 (812)
T ss_pred c--eeeeee-ecccCCeeehHhhhhhHHHHHHHHhcCC
Confidence 3 444442 3466789999999999999999988655
No 126
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=30.14 E-value=2.1e+02 Score=26.33 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=50.4
Q ss_pred EeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceee--------eCceEEEEEEEecc-------------CcCc
Q 004828 72 IRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF--------NHGDVYVMRLYNRL-------------DESK 130 (728)
Q Consensus 72 l~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~--------~~~~~yv~~~yn~~-------------~~~~ 130 (728)
|-.-.+..|..+|... .=+|-- +..+.=|-|.|++++++ -+++++=..||... +.+.
T Consensus 4 l~~~~a~v~~~~~~~~-~W~~~~-~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~~~ 81 (104)
T cd00837 4 ISTAVAQVYTADPSTG-KWVPAS-GGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDDNC 81 (104)
T ss_pred EEEEEEEEEEECCCCC-ceEECC-CCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcCCc
Confidence 4455677777777633 224421 44444455566555544 45666666666543 3345
Q ss_pred ceeeeccCHHHHHHHHHHHHHHH
Q 004828 131 KGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 131 ~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
++=|.-.|.+||....+++++|+
T Consensus 82 ~~GL~F~se~eA~~F~~~v~~~~ 104 (104)
T cd00837 82 VYGLNFASEEEAAQFRKKVLEAI 104 (104)
T ss_pred EEEEeeCCHHHHHHHHHHHHhcC
Confidence 66777789999999999988763
No 127
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=28.72 E-value=75 Score=39.31 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=35.9
Q ss_pred CceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHH
Q 004828 114 HGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEV 158 (728)
Q Consensus 114 ~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~~ 158 (728)
.+..|||.+--+.--..-+.+||.|.|||-.|..+|+++..-|+.
T Consensus 871 n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a~t 915 (1267)
T KOG1264|consen 871 NQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKADT 915 (1267)
T ss_pred CCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHhhh
Confidence 346778877666655667899999999999999999999875543
No 128
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=27.49 E-value=1.4e+02 Score=37.34 Aligned_cols=97 Identities=18% Similarity=0.365 Sum_probs=65.4
Q ss_pred eeeEEEEEccc-------ccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCcee--Eeeccceee-eCceE
Q 004828 48 YFGWVYHMGTN-------SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEELGRRRF-NHGDV 117 (728)
Q Consensus 48 ~eGw~y~~~~~-------~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~r--v~d~Gr~~~-~~~~~ 117 (728)
.-|.+|---++ +=++.=+.++|-||.|-.|.||...-..-|. +.|..+=. +.-.=-+++ +-+++
T Consensus 494 ~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~------~lI~~~Eivclav~~pd~~pn~~~~ 567 (1186)
T KOG1117|consen 494 LCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPN------GLININEIVCLAVHPPDTYPNTGFI 567 (1186)
T ss_pred ccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCC------ceeeccceEEEeecCCCCCCCcCce
Confidence 34888864333 2345556789999999999999977766653 22222211 111111122 34799
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 118 yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
|+|.+|=..+ +-..+|+.+++++.+|-+++-..
T Consensus 568 f~fE~~l~~e--r~~~fgle~ad~l~~wt~aiaKh 600 (1186)
T KOG1117|consen 568 FIFEIYLPGE--RVFLFGLETADALRKWTEAIAKH 600 (1186)
T ss_pred eEEEEeeccc--ceEEeecccHHHHHHHHHHHHHh
Confidence 9999997764 67899999999999999998543
No 129
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=27.29 E-value=56 Score=29.73 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=24.0
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCC
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~ 292 (728)
....+|++||++||+.|.+.+. ..+|...
T Consensus 3 ~~~~~i~ap~e~Vw~~~td~~~--~~~W~~~ 31 (136)
T cd08893 3 VYVTYIRATPEKVWQALTDPEF--TRQYWGG 31 (136)
T ss_pred EEEEEecCCHHHHHHHHcCchh--hhheecc
Confidence 3456899999999999999865 7789755
No 130
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=24.42 E-value=81 Score=36.49 Aligned_cols=39 Identities=10% Similarity=0.184 Sum_probs=33.2
Q ss_pred eCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 113 NHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 113 ~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.-+.=|||.+.++-. +++-+=|.+.+|...||++|++++
T Consensus 451 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 489 (496)
T PTZ00283 451 GSNAAHVFAVAFKTG--RRLLFQARSDPERDAWMQKIQSVL 489 (496)
T ss_pred CCCCCcEEEEEecCC--cEEEEecCCchhHHHHHHHHHHhc
Confidence 334568999988764 788999999999999999999996
No 131
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=23.52 E-value=55 Score=38.86 Aligned_cols=94 Identities=14% Similarity=0.199 Sum_probs=57.8
Q ss_pred ccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEe-eccceeeeCceEEEEEEEeccCcCcceeeecc
Q 004828 59 SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVE-ELGRRRFNHGDVYVMRLYNRLDESKKGEIACA 137 (728)
Q Consensus 59 ~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~-d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~a~ 137 (728)
|+=+.| ++|||.|.|-.|.|-|-+-.+..+.-||-=--|.+---|. .+|+++. .+.|=||+-= +-+-|-|.
T Consensus 749 Rf~kRW-~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rsl-pKAFEIFTAD------~T~ILKaK 820 (851)
T KOG3723|consen 749 RFIKRW-KTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSL-PKAFEIFTAD------KTYILKAK 820 (851)
T ss_pred hhhhhh-ccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhccc-chhhheeecC------ceEEeecc
Confidence 333455 8999999999998877655444333343222222111011 2344433 3456666532 22667799
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 004828 138 TAGEARKWMEAFDQAKQQAEVEL 160 (728)
Q Consensus 138 ~~eea~~W~~a~~~a~~~~~~~~ 160 (728)
+..-|+.|.+++.=|+.+|+...
T Consensus 821 DeKNAEEWlqCL~IavAHa~~r~ 843 (851)
T KOG3723|consen 821 DEKNAEEWLQCLNIAVAHAKERE 843 (851)
T ss_pred cccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998766544
No 132
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=22.26 E-value=82 Score=29.06 Aligned_cols=30 Identities=20% Similarity=0.324 Sum_probs=25.1
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCC
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDML 292 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~ 292 (728)
++....|++||++||+++.+.+. ..+|...
T Consensus 3 i~~~i~i~a~~e~Vw~~~td~~~--~~~W~~~ 32 (145)
T cd08898 3 IERTILIDAPRERVWRALTDPEH--FGQWFGV 32 (145)
T ss_pred eEEEEEecCCHHHHHHHhcChhh--hhhcccc
Confidence 45567899999999999999875 6789875
Done!