Query 004828
Match_columns 728
No_of_seqs 325 out of 614
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:04:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004828.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004828hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fo5_A Thioesterase, adipose a 100.0 4E-38 1.4E-42 327.3 14.7 208 203-432 37-248 (258)
2 3p0l_A Steroidogenic acute reg 100.0 1.9E-34 6.5E-39 290.4 20.7 186 231-432 29-216 (221)
3 2r55_A STAR-related lipid tran 100.0 1.1E-33 3.9E-38 286.0 24.4 187 231-431 41-229 (231)
4 1jss_A Stard4, cholesterol-reg 100.0 6.9E-34 2.4E-38 287.4 20.7 182 232-430 42-223 (224)
5 2pso_A STAR-related lipid tran 100.0 1.4E-33 4.9E-38 288.9 21.8 184 231-435 48-232 (237)
6 1em2_A MLN64 protein; beta bar 100.0 2.1E-33 7.2E-38 283.9 20.6 187 230-432 39-227 (229)
7 3qsz_A STAR-related lipid tran 100.0 2.1E-29 7.2E-34 246.7 22.3 179 232-431 2-180 (189)
8 2e3n_A Lipid-transfer protein 100.0 7.9E-29 2.7E-33 254.6 19.1 193 228-431 42-247 (255)
9 1ln1_A PC-TP, phosphatidylchol 100.0 2E-28 6.7E-33 243.6 20.5 180 231-431 26-210 (214)
10 2w2x_D 1-phosphatidylinositol- 99.3 1.1E-12 3.8E-17 120.8 6.8 106 44-154 10-119 (124)
11 2d9x_A Oxysterol binding prote 99.1 5.3E-10 1.8E-14 101.3 11.3 102 44-159 6-109 (120)
12 1u5d_A SKAP55, SRC kinase-asso 99.0 1.5E-09 5E-14 95.0 11.9 102 45-154 2-105 (108)
13 2dkp_A Pleckstrin homology dom 99.0 3E-09 1E-13 96.5 13.6 100 44-153 19-118 (128)
14 2yry_A Pleckstrin homology dom 99.0 3.7E-09 1.3E-13 95.1 13.9 101 44-154 20-120 (122)
15 1v88_A Oxysterol binding prote 99.0 1.2E-09 4.1E-14 102.1 11.0 99 42-153 4-123 (130)
16 2rsg_A Collagen type IV alpha- 99.0 8E-10 2.7E-14 95.7 8.6 93 46-153 1-93 (94)
17 4a6h_A Phosphatidylinositol 4, 99.0 2.9E-09 9.9E-14 98.4 12.4 101 46-153 6-117 (120)
18 2dhk_A TBC1 domain family memb 99.0 3.5E-09 1.2E-13 96.1 12.6 98 43-154 5-104 (119)
19 1unq_A RAC-alpha serine/threon 99.0 1.8E-09 6.2E-14 98.0 10.4 104 44-157 6-113 (125)
20 2da0_A 130-kDa phosphatidylino 99.0 3.2E-09 1.1E-13 95.5 11.7 96 44-156 8-103 (114)
21 2dn6_A KIAA0640 protein; PH do 99.0 4.1E-09 1.4E-13 93.7 12.3 101 43-156 5-105 (115)
22 2cod_A Centaurin-delta 1; ARF 99.0 4.4E-09 1.5E-13 94.1 12.3 94 44-154 6-99 (115)
23 1u5f_A SRC-associated adaptor 99.0 4.2E-09 1.4E-13 98.8 12.3 109 38-154 9-119 (148)
24 1v89_A Hypothetical protein KI 99.0 8.7E-09 3E-13 91.6 13.6 103 43-154 5-112 (118)
25 1eaz_A Tandem PH domain contai 98.9 4.8E-09 1.6E-13 94.6 11.0 101 43-154 11-111 (125)
26 1fao_A Dual adaptor of phospho 98.9 5.2E-09 1.8E-13 95.0 11.0 104 42-159 14-117 (126)
27 1upq_A PEPP1; PH domain, phosp 98.9 9E-09 3.1E-13 92.7 12.0 100 45-154 10-109 (123)
28 2y7b_A Actin-binding protein a 98.9 4.3E-09 1.5E-13 96.4 10.0 107 44-154 3-128 (134)
29 1wgq_A FYVE, rhogef and PH dom 98.9 1.4E-08 4.9E-13 89.9 13.0 100 41-153 3-102 (109)
30 1v5u_A SBF1, SET binding facto 98.9 3E-09 1E-13 94.8 8.4 101 42-153 4-110 (117)
31 3rcp_A Pleckstrin homology dom 98.9 5.4E-09 1.9E-13 91.6 9.5 92 48-153 1-92 (103)
32 1fgy_A GRP1; PH domain, signal 98.9 1.3E-08 4.4E-13 91.8 12.2 99 44-154 3-120 (127)
33 2i5f_A Pleckstrin; PH domain, 98.9 1.4E-08 4.6E-13 89.4 12.0 100 44-153 5-108 (109)
34 2d9y_A Pleckstrin homology dom 98.9 1.1E-08 3.8E-13 91.1 11.5 100 44-153 9-108 (117)
35 1wi1_A Calcium-dependent activ 98.9 1.2E-08 4E-13 95.5 11.4 98 44-153 6-109 (126)
36 1u5e_A SRC-associated adaptor 98.8 2E-08 6.7E-13 101.1 12.7 109 38-154 98-208 (211)
37 1pls_A Pleckstrin homology dom 98.8 3.2E-08 1.1E-12 88.1 12.6 99 44-154 3-101 (113)
38 1wg7_A Dedicator of cytokinesi 98.8 2E-08 6.7E-13 94.2 11.6 101 44-154 16-124 (150)
39 3aj4_A Pleckstrin homology dom 98.8 5.9E-09 2E-13 92.7 7.7 103 45-153 4-110 (112)
40 2cof_A Protein KIAA1914; PH do 98.8 7.9E-09 2.7E-13 91.8 8.2 95 44-153 6-100 (107)
41 1x05_A Pleckstrin; PH domain, 98.8 2.6E-08 8.8E-13 90.8 11.6 101 43-153 15-119 (129)
42 1x1f_A Signal-transducing adap 98.8 6.2E-08 2.1E-12 92.8 13.9 95 46-154 18-113 (149)
43 2d9v_A Pleckstrin homology dom 98.8 3.6E-08 1.2E-12 91.0 11.7 101 44-153 6-113 (130)
44 1btn_A Beta-spectrin; signal t 98.8 7.5E-09 2.6E-13 90.7 6.5 100 48-152 1-106 (106)
45 2j59_M RHO-GTPase activating p 98.7 2.3E-08 7.9E-13 95.7 9.5 101 45-154 2-111 (168)
46 2coc_A FYVE, rhogef and PH dom 98.7 5.9E-08 2E-12 88.6 10.3 97 42-153 4-105 (112)
47 1dyn_A Dynamin; signal transdu 98.7 9E-08 3.1E-12 89.1 11.5 100 46-153 12-116 (125)
48 1btk_A Bruton'S tyrosine kinas 98.7 5E-08 1.7E-12 94.8 10.2 105 45-153 2-131 (169)
49 3tfm_A Myosin X; split PH doma 98.7 7.1E-08 2.4E-12 97.8 11.2 100 42-154 54-155 (228)
50 1wjm_A Beta-spectrin III; PH d 98.7 7E-08 2.4E-12 87.5 9.8 106 44-154 6-117 (123)
51 1v5p_A Pleckstrin homology dom 98.7 9.4E-08 3.2E-12 88.7 10.6 100 46-153 15-119 (126)
52 2lul_A Tyrosine-protein kinase 98.7 3.4E-08 1.1E-12 95.3 7.7 105 44-154 13-121 (164)
53 1x1g_A Pleckstrin 2; PH domain 98.7 1.1E-07 3.8E-12 86.4 10.7 101 43-153 15-123 (129)
54 3cxb_B Pleckstrin homology dom 98.6 1.8E-07 6.1E-12 84.5 11.2 96 48-154 2-101 (112)
55 2p0d_A RHO GTPase-activating p 98.6 3.3E-07 1.1E-11 84.8 12.7 104 44-154 10-124 (129)
56 2rlo_A Centaurin-gamma 1; spli 98.5 1.4E-07 4.7E-12 86.6 7.8 107 45-154 3-124 (128)
57 3tca_A Amyloid beta A4 precurs 98.5 3.5E-07 1.2E-11 94.3 10.4 106 44-153 166-275 (291)
58 2fjl_A 1-phosphatidylinositol- 98.5 6.6E-07 2.2E-11 85.9 11.0 101 48-153 3-147 (150)
59 3a8p_A T-lymphoma invasion and 98.4 8.7E-07 3E-11 92.1 12.0 109 41-156 6-126 (263)
60 2r09_A Cytohesin-3; autoinhibi 98.4 4E-07 1.4E-11 98.0 9.6 98 45-154 212-328 (347)
61 1dro_A Beta-spectrin; cytoskel 98.4 4.5E-07 1.5E-11 82.5 7.5 105 44-154 6-119 (122)
62 3pp2_A RHO GTPase-activating p 98.4 2E-06 6.8E-11 79.0 11.4 105 43-154 5-123 (124)
63 2dtc_A RAL guanine nucleotide 98.4 1.7E-06 5.6E-11 81.0 10.6 100 47-153 2-111 (126)
64 4h8s_A DCC-interacting protein 98.3 1.6E-06 5.4E-11 94.7 11.3 99 44-155 299-399 (407)
65 1qqg_A IRS-1, insulin receptor 98.3 5.7E-07 2E-11 93.6 6.3 97 44-154 8-112 (264)
66 3lju_X ARF-GAP with dual PH do 98.3 2.5E-06 8.5E-11 93.2 11.0 103 43-154 266-372 (386)
67 2q13_A DCC-interacting protein 98.2 3.2E-06 1.1E-10 91.6 8.6 99 44-154 276-375 (385)
68 4ejn_A RAC-alpha serine/threon 98.0 1.3E-05 4.5E-10 87.3 10.4 101 44-154 4-108 (446)
69 2ys3_A UNC-112-related protein 98.0 2E-05 7E-10 74.5 9.6 104 44-153 7-111 (137)
70 2rov_A RHO-associated protein 98.0 6.5E-06 2.2E-10 75.5 6.0 106 47-153 2-114 (117)
71 3lju_X ARF-GAP with dual PH do 97.8 2.1E-05 7.3E-10 85.8 7.4 98 46-154 146-246 (386)
72 2d9w_A Docking protein 2; PH d 97.7 0.00031 1.1E-08 65.5 11.3 105 44-153 10-120 (127)
73 3hk0_A Growth factor receptor- 97.5 0.00022 7.5E-09 74.0 9.6 107 43-154 129-240 (256)
74 4gmv_A RAS-associated and plec 97.5 0.0003 1E-08 74.0 9.3 106 44-154 156-266 (281)
75 2d9z_A Protein kinase C, NU ty 97.3 0.001 3.5E-08 62.1 10.3 109 41-153 3-122 (129)
76 2coa_A Protein kinase C, D2 ty 97.3 0.0017 5.8E-08 60.4 11.0 102 41-153 3-118 (125)
77 3a8n_A TIAM-1, T-lymphoma inva 97.3 0.00034 1.2E-08 73.4 6.9 108 41-154 6-124 (279)
78 4f7h_A Fermitin family homolog 96.8 0.014 4.8E-07 56.9 12.6 105 43-153 44-149 (173)
79 4bbk_A Kindlin-1, fermitin fam 96.6 0.024 8.2E-07 54.7 13.1 105 43-153 23-128 (165)
80 3tl1_A WHIE ORF VI, polyketide 96.6 0.049 1.7E-06 52.0 15.4 142 262-431 6-147 (159)
81 1t17_A Conserved hypothetical 96.5 0.045 1.5E-06 50.4 13.6 113 260-399 3-118 (148)
82 3tvq_A Multifunctional cyclase 96.4 0.047 1.6E-06 52.8 13.9 142 262-431 6-147 (169)
83 2d4r_A Hypothetical protein TT 96.4 0.17 5.7E-06 44.7 16.3 139 261-430 4-144 (147)
84 3tfz_A Cyclase; helix-GRIP, BE 96.2 0.13 4.5E-06 48.9 15.5 147 260-431 6-160 (172)
85 2pcs_A Conserved protein; stru 95.8 0.17 5.7E-06 47.0 13.9 143 261-431 5-149 (162)
86 3p9v_A Uncharacterized protein 95.4 0.61 2.1E-05 43.9 16.4 112 261-399 9-122 (161)
87 3qwm_A Iqsec1, IQ motif and SE 95.3 0.1 3.5E-06 49.5 10.7 108 46-159 13-127 (140)
88 3ggn_A Uncharacterized protein 95.2 0.32 1.1E-05 45.4 13.6 142 260-432 5-148 (155)
89 2ns9_A Hypothetical protein AP 95.0 0.96 3.3E-05 41.1 16.1 140 261-430 15-156 (157)
90 1v61_A RAC/CDC42 guanine nucle 94.8 0.034 1.2E-06 52.2 5.5 82 64-156 43-128 (132)
91 3f08_A Uncharacterized protein 94.4 0.65 2.2E-05 43.3 13.6 136 261-431 4-139 (146)
92 1w1g_A HPDK1, 3-phosphoinositi 92.1 0.48 1.7E-05 45.4 8.7 91 43-154 49-139 (151)
93 2le1_A Uncharacterized protein 91.1 2.4 8.2E-05 38.8 12.2 140 261-433 4-146 (151)
94 1mai_A Phospholipase C delta-1 90.6 0.63 2.1E-05 42.9 7.6 98 50-154 17-121 (131)
95 2dfk_A Collybistin II; DH doma 89.6 3.4 0.00012 44.6 13.6 111 44-159 255-368 (402)
96 1xcg_A PDZ-rhogef, RHO guanine 89.0 2.2 7.6E-05 45.1 11.4 106 43-156 250-368 (368)
97 3p51_A Uncharacterized protein 88.6 10 0.00036 35.8 14.7 139 261-432 4-144 (160)
98 2pz1_A RHO guanine nucleotide 88.5 3.5 0.00012 45.2 12.9 108 44-156 332-442 (466)
99 1kz7_A Guanine nucleotide exch 87.8 2.7 9.2E-05 44.6 11.1 111 44-160 208-331 (353)
100 3mpx_A FYVE, rhogef and PH dom 87.5 1.1 3.6E-05 48.7 7.8 97 44-155 242-338 (434)
101 1nty_A Triple functional domai 86.5 4.3 0.00015 42.0 11.5 107 44-156 201-310 (311)
102 2vrw_B P95VAV, VAV1, proto-onc 85.5 5.3 0.00018 42.9 12.0 105 44-156 232-337 (406)
103 3odw_A RHO guanine nucleotide 84.6 4.2 0.00014 45.8 11.1 104 44-156 410-526 (536)
104 3p6a_A RHO guanine nucleotide 83.6 5 0.00017 42.4 10.6 102 44-154 257-371 (377)
105 2qpv_A Uncharacterized protein 83.3 13 0.00045 35.1 12.3 33 262-296 30-62 (156)
106 1txd_A RHO guanine nucleotide 82.6 7.9 0.00027 41.2 11.7 105 44-157 255-372 (385)
107 1tw0_A Pathogenesis-related cl 80.9 31 0.0011 32.3 13.9 149 262-433 6-155 (157)
108 3ky9_A Proto-oncogene VAV; cal 80.3 8.8 0.0003 43.6 11.6 104 44-155 404-508 (587)
109 3zvr_A Dynamin-1; hydrolase, D 79.6 6.1 0.00021 46.9 10.2 98 46-152 540-643 (772)
110 1e09_A PRU AV 1; allergen, maj 77.8 23 0.0008 33.2 12.0 148 262-433 6-156 (159)
111 3t06_A PDZ-rhogef, RHO guanine 77.5 13 0.00045 39.9 11.4 102 43-154 292-408 (418)
112 1dbh_A Protein (human SOS 1); 75.8 11 0.00038 39.5 10.1 98 44-153 245-348 (354)
113 2qim_A PR10.2B; trans-zeatin, 73.9 29 0.00098 32.5 11.4 148 261-433 6-156 (158)
114 2rgn_B RHOA/RAC/CDC42 exchange 72.7 15 0.0005 38.8 10.1 110 44-158 205-323 (354)
115 3ijt_A SMU.440, putative uncha 72.5 3 0.0001 39.3 4.2 36 260-297 19-54 (155)
116 2lg1_A A-kinase anchor protein 72.5 23 0.00079 34.4 10.7 102 44-155 69-173 (185)
117 3kl1_A PYL2, putative uncharac 71.4 23 0.00078 34.8 10.4 111 266-399 42-158 (190)
118 3rt2_A Abscisic acid receptor 69.7 51 0.0018 32.1 12.4 138 265-430 33-176 (183)
119 2z0q_A XPLN, RHO guanine nucle 69.3 6.9 0.00024 40.9 6.6 95 45-153 231-345 (346)
120 1zc3_B Exocyst complex protein 69.0 61 0.0021 28.9 11.9 98 46-154 8-107 (113)
121 1icx_A Protein LLR18A, LLPR10. 66.5 44 0.0015 31.1 10.9 148 262-433 6-154 (155)
122 3jzy_A Intersectin 2; C2 domai 65.3 1.3 4.5E-05 48.8 0.0 100 44-156 251-364 (510)
123 3tfm_A Myosin X; split PH doma 64.7 9.2 0.00032 38.1 6.1 48 42-98 17-64 (228)
124 3ksy_A SOS-1, SON of sevenless 62.1 21 0.00072 43.6 9.7 100 44-155 442-547 (1049)
125 3jrs_A PYL1, putative uncharac 52.4 82 0.0028 31.4 10.5 135 266-431 61-205 (208)
126 3oqu_A Abscisic acid receptor 50.5 2E+02 0.0068 28.5 13.5 136 266-431 59-201 (205)
127 2flh_A Cytokinin-specific bind 48.7 1.7E+02 0.0058 27.2 14.9 145 261-432 5-154 (155)
128 2i9y_A Major latex protein-lik 44.2 1.4E+02 0.0047 28.1 10.3 143 261-431 19-165 (166)
129 3k3k_A Abscisic acid receptor 38.5 3E+02 0.01 27.3 12.1 47 266-314 57-104 (211)
130 3qrz_A Abscisic acid receptor 36.6 28 0.00094 35.2 4.2 111 266-399 85-197 (223)
131 2pk2_A Cyclin-T1, protein TAT; 34.7 8.2 0.00028 41.4 0.0 8 57-64 325-332 (358)
132 1foe_A T-lymphoma invasion and 31.9 4.2E+02 0.014 27.6 12.8 26 129-154 341-366 (377)
133 3q6a_A Uncharacterized protein 28.7 49 0.0017 29.3 4.1 29 261-291 3-31 (135)
134 3ml4_A Protein DOK-7; tyrosine 25.7 2.2E+02 0.0075 28.8 8.5 97 44-152 7-111 (224)
135 2leq_A Uncharacterized protein 21.3 42 0.0014 29.3 2.2 29 260-290 6-34 (146)
No 1
>3fo5_A Thioesterase, adipose associated, isoform BFIT2; orthogonal bundle, consortium, lipid transport; HET: 1PE TCE; 2.00A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=327.27 Aligned_cols=208 Identities=16% Similarity=0.185 Sum_probs=177.2
Q ss_pred CCcccCCCCCCCCccCCCCCCCcc--cccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHc
Q 004828 203 ETLLRQSSDLGGSVRGEGFFEGDI--GDAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLN 280 (728)
Q Consensus 203 ~~~~~~ws~~~~~~~~~l~~~~~~--~~~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d 280 (728)
..++++||++||+ ||+|+|++ +++++++||++..+++||+||+++.. ....+|++++|++||++||++|+|
T Consensus 37 ~p~~~~w~~~~~~---~l~~~n~~al~~l~~~~gW~~~~~~~gv~Vy~~~~~----~~l~~k~~~~v~~~~~~v~~~L~D 109 (258)
T 3fo5_A 37 VPLSVPWDPSNQV---YLSYNNVSSLKMLVAKDNWVLSSEISQVRLYTLEDD----KFLSFHMEMVVHVDAAQAFLLLSD 109 (258)
T ss_dssp SCSEEECCGGGHH---HHHHHHHHHHHHHHTCSCCEEEEEETTEEEEEEECS----SCEEEEEEEEESSCHHHHHHHHHC
T ss_pred CCcccccCcccce---ecccCCHHHHHhhhccCCCEEEecCCCeEEEEEECC----CceEEEEEEEEeCCHHHHHHHHhC
Confidence 4588999999999 99999996 88999999999999999999998642 246789999999999999999999
Q ss_pred CCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEc-CCC-eEEEEEeeccCCCCCCCCC
Q 004828 281 LERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG-TYTILQFPAVHKKRPPKSG 358 (728)
Q Consensus 281 ~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~-~DG-sYvIa~~SV~Hp~~Pp~~G 358 (728)
+.. |++||+++.++++||+||++ +++|+...|.. ++++++||||++|+||+. .+| .|+|+.+||+||.+||++|
T Consensus 110 ~~~--R~~WD~~~~~~~vle~id~~-~ivY~~~~p~~-~~~v~~RDFV~lr~~r~~~~~G~~yvi~~~SV~hp~~Pp~~g 185 (258)
T 3fo5_A 110 LRQ--RPEWDKHYRSVELVQQVDED-DAIYHVTSPAL-GGHTKPQDFVILASRRKPCDNGDPYVIALRSVTLPTHRETPE 185 (258)
T ss_dssp GGG--GGGTCTTCCEEEEEEEEETT-EEEEEEEECCC-TTCSSCEEEEEEEEEECCSSTTCCEEEEEEEEECTTSCCCTT
T ss_pred chh--HhHhhhhccEEEEEEEcCCC-eEEEEEecCCc-cCCCCCCEEEEEEEEEeccCCCCEEEEEEEeccCCCCCCCCC
Confidence 876 99999999999999999999 78887766642 257999999999999874 356 5999999999999999999
Q ss_pred eeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhcCC
Q 004828 359 YRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 432 (728)
Q Consensus 359 ~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~~ 432 (728)
||||+++++||+|+|+++ +.|+|||+.|+|+ |.+ |.|...+.+ +...+.+...+|++|+....
T Consensus 186 ~VR~~~~~sg~~I~P~~~------~~t~VtY~~q~dp-G~l---P~~~~n~~g-~s~~~~~t~~~~~~fl~~~~ 248 (258)
T 3fo5_A 186 YRRGETLCSGFCLWREGD------QLTKVSYYNQATP-GVL---NYVTTNVAG-LSSEFYTTFKACEQFLLDNR 248 (258)
T ss_dssp SEECCCSSEEEEEEEEET------TEEEEEEEESCCG-GGH---HHHHHHHHT-SCCHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEcCcEEEEEECCC------CCEEEEEEEeeCC-CCC---CceEEeccc-cchHHHHHHHHHHHHHHhcc
Confidence 999999999999999986 6899999999999 557 433333322 23334566778999988763
No 2
>3p0l_A Steroidogenic acute regulatory protein, mitochond; structural genomics consortium, SGC, start domain, cholester transport, cholesterol; 3.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=290.43 Aligned_cols=186 Identities=18% Similarity=0.268 Sum_probs=159.9
Q ss_pred cCCCCEEEE-EeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHH-cCCCcccccccCCCCceEEEEeecCceEE
Q 004828 231 EAHEWKCVR-TLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYDV 308 (728)
Q Consensus 231 a~sgW~l~~-~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~-d~~~~~R~eWD~~~~~~eVVE~lDe~TDI 308 (728)
+.+||++.. +++|++||++..+. + +.++|++++|+++|++||++|+ |.+. |++||+++.++++||++|++++|
T Consensus 29 ~~~gW~~~~~~~~gv~vy~~~~~~--~-g~~~k~~~~v~~~~~~v~~~l~~d~~~--r~~Wd~~~~~~~vle~~~~~t~I 103 (221)
T 3p0l_A 29 NQEGWKKESQQDNGDKVMSKVVPD--V-GKVFRLEVVVDQPMERLYEELVERMEA--MGEWNPNVKEIKVLQKIGKDTFI 103 (221)
T ss_dssp SCTTCEEEEECTTSCEEEEEECSS--S-CEEEEEEEEESSCHHHHHHHHTTTGGG--TTTSCTTCSEEEEEEECSSSEEE
T ss_pred CCCCCeEeeecCCCcEEEEEEcCC--C-ceEEEEEEEEcCCHHHHHHHHHhccch--hhhcCcchheEEEEEecCCCeEE
Confidence 578999995 89999999997542 2 5899999999999999999985 7665 99999999999999999999999
Q ss_pred EEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEE
Q 004828 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 388 (728)
Q Consensus 309 iY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT 388 (728)
+|++.++. +++++++||||++|+|++. +|.|+|+.+||+||.+||++|||||+++++||+|+|+++ ++++|+||
T Consensus 104 ~y~~~~~~-~~~~v~~RDfv~~r~~~~~-~~~~vi~~~Sv~~~~~P~~~g~VR~~~~~~g~~i~p~~~----~~~~t~vt 177 (221)
T 3p0l_A 104 THELAAEA-AGNLVGPRDFVSVRCAKRR-GSTCVLAGMATDFGNMPEQKGVIRAEHGPTCMVLHPLAG----SPSKTKLT 177 (221)
T ss_dssp EEEEECC----CCSCCEEEEEEEEEEEC-SSCEEECCEECCCTTSCCCTTSEECEECSCEEEEEEETT----EEEEEEEE
T ss_pred EEEeeccc-cCCccCCceEEEEEEEEEc-CCeEEEEEEeccCCCCCCCCCeEEEeccceEEEEEECCC----CCCcEEEE
Confidence 99877653 3457999999999999986 478999999999999999999999999999999999986 34589999
Q ss_pred EEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhcCC
Q 004828 389 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 432 (728)
Q Consensus 389 ~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~~ 432 (728)
|++|+|||||+ |.|+ +.+.+...|++.+.+||+.++..+
T Consensus 178 ~~~~~Dp~G~i---P~~l--vn~~~~~~~~~~~~~Lr~~~~~~~ 216 (221)
T 3p0l_A 178 WLLSIDLKGWL---PKSI--INQVLSQTQVDFANHLRKRLESHP 216 (221)
T ss_dssp EEECEECCSSC---CHHH--HHHHHHHHHHHHHHHHHHHTC---
T ss_pred EEEEecCCCCC---CHHH--HHHHHHHHHHHHHHHHHHHHhhch
Confidence 99999999999 5422 445666788899999999998544
No 3
>2r55_A STAR-related lipid transfer protein 5; alpha and beta protein, cholesterol binding, structural GENO structural genomics consortium, SGC; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=285.96 Aligned_cols=187 Identities=21% Similarity=0.215 Sum_probs=161.5
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHH--HcCCCcccccccCCCCceEEEEeecCceEE
Q 004828 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVV--LNLERHQRYEWDMLTGDLELVDSYDGHYDV 308 (728)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL--~d~~~~~R~eWD~~~~~~eVVE~lDe~TDI 308 (728)
+..+|+++.+++|++||++..+. +.+.++|++++|+++|++||++| +|.+. |.+||+++.++++|+++|++++|
T Consensus 41 ~~~~W~~~~~~~gv~v~~~~~~~--~~~~~~k~~~~v~~~~~~v~~~l~~~d~~~--r~~Wd~~~~~~~vle~i~~~~~i 116 (231)
T 2r55_A 41 DTAGWKICREGNGVSVSWRPSVE--FPGNLYRGEGIVYGTLEEVWDCVKPAVGGL--RVKWDENVTGFEIIQSITDTLCV 116 (231)
T ss_dssp CCSSCEEEECCSSEEEEEEECSS--SSSEEEEEEEEESSCHHHHHHHHCC--CCS--HHHHCTTCSEEEEEEECSSSEEE
T ss_pred CCCCCEEEEeCCCEEEEEEccCC--CCCcEEEEEEEECCCHHHHHHHHHhhCcch--hhhhccccceeEEEEEcCCCEEE
Confidence 35799999999999999997632 34689999999999999999999 76765 99999999999999999999999
Q ss_pred EEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEE
Q 004828 309 VYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVT 388 (728)
Q Consensus 309 iY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT 388 (728)
+|++..+ ++++++++||||++|+|++.++|+|+|+.+||+||.+||.+|||||++.++||+|+|++. ++++|+||
T Consensus 117 ~~~~~~~-~~~~~v~~RDfv~~r~~~~~~~g~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~----~~~~t~vt 191 (231)
T 2r55_A 117 SRTSTPS-AAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCFCEPLPG----EPTKTNLV 191 (231)
T ss_dssp EEEECCC-BTTTTBCCEEEEEEEEEEECTTSCEEEEEEECCCTTSCCCTTCEEEEECSEEEEEEECC------CCCEEEE
T ss_pred EEEEecc-ccCCccCCCeEEEEEEEEEcCCCEEEEEEEeccCCCCCCCCCCEEEEEEeeEEEEEEeCC----CCCcEEEE
Confidence 8876555 345689999999999999998899999999999999999999999999999999999974 24689999
Q ss_pred EEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhcC
Q 004828 389 QMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGAN 431 (728)
Q Consensus 389 ~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~ 431 (728)
|++++||+||+ |.|+ +...+...|+..+++||+++++.
T Consensus 192 ~~~~~Dp~G~i---P~~l--vn~~~~~~~~~~~~~Lr~~~~~~ 229 (231)
T 2r55_A 192 TFFHTDLSGYL---PQNV--VDSFFPRSMTRFYANLQKAVKQF 229 (231)
T ss_dssp EEECEECCSSC---CHHH--HHHHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEeCCCCCc---cHHH--HHHHHhHhHHHHHHHHHHHHHHh
Confidence 99999999999 4422 33456677889999999998764
No 4
>1jss_A Stard4, cholesterol-regulated start protein 4; start domain, structural genomics, PSI, protein structure initiative; 2.20A {Mus musculus} SCOP: d.129.3.2
Probab=100.00 E-value=6.9e-34 Score=287.45 Aligned_cols=182 Identities=18% Similarity=0.272 Sum_probs=159.2
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEE
Q 004828 232 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYG 311 (728)
Q Consensus 232 ~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~ 311 (728)
.+||++..+++||+||++... .+.+.++|++++|+++|++||++|+|... |++||+++.++++||++|++++|+|+
T Consensus 42 ~~~W~~~~~~~gv~vy~~~~~--~~~~~~~k~~~~v~~~~~~v~~~l~d~~~--r~~Wd~~~~~~~vle~id~~~~I~y~ 117 (224)
T 1jss_A 42 EDEWRVAKKAKDVTVWRKPSE--EFNGYLYKAQGVMDDVVNNVIDHIRPGPW--RLDWDRLMTSLDVLEHFEENCCVMRY 117 (224)
T ss_dssp GGGCEEEEEETTEEEEEEECS--SSSSEEEEEEEEESSCHHHHHHHHSSSTT--HHHHCSSEEEEEEEEECSTTEEEEEE
T ss_pred CCCCEEEEECCCEEEEEEecc--CCCceEEEEEEEEeCCHHHHHHHHhCccc--ccccccceeeEEEEEEcCCCeEEEEE
Confidence 578999999999999999543 24568999999999999999999999776 99999999999999999999999999
Q ss_pred EeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE
Q 004828 312 TYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 391 (728)
Q Consensus 312 ~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~ 391 (728)
++++.+ ++++++||||++|+|++.+|| |+++++||+||.+| +|||||+++++||+|+|+++ ++++|+|||++
T Consensus 118 ~~~~~~-~~~v~~RDfv~~r~~~~~~~~-~vi~~~Sv~hp~~~--~g~VR~~~~~~g~~i~p~~~----~~~~t~vt~~~ 189 (224)
T 1jss_A 118 TTAGQL-LNIISPREFVDFSYTVGYEEG-LLSCGVSVEWSETR--PEFVRGYNHPCGWFCVPLKD----SPSQSLLTGYI 189 (224)
T ss_dssp EECCBT-TTTBCCEEEEEEEEEEEETTE-EEEEEEECCCCCCC--TTSEECEECSEEEEEEEETT----EEEEEEEEEEE
T ss_pred Eccccc-CCCCCCCeEEEEEEEEEcCCe-EEEEEeeeecCCCC--CCCEEEEecccEEEEEEcCC----CCCceEEEEEE
Confidence 998754 346999999999999998776 88899999999995 49999999999999999975 34689999999
Q ss_pred eEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhc
Q 004828 392 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGA 430 (728)
Q Consensus 392 qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~ 430 (728)
++||+||+ |.| .+.+.+...|+..+.+||++++.
T Consensus 190 ~~Dp~G~i---P~~--lvn~~~~~~~~~~~~~Lr~~~~~ 223 (224)
T 1jss_A 190 QTDLRGMI---PQS--AVDTAMASTLANFYSDLRKGLRK 223 (224)
T ss_dssp CEECCSCC---CHH--HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred EeCCCCCc---cHH--HHHHHHHHhHHHHHHHHHHHHhh
Confidence 99999999 442 24455677888999999999864
No 5
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=100.00 E-value=1.4e-33 Score=288.90 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=157.5
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEE
Q 004828 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVY 310 (728)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY 310 (728)
...||++..+++|++||++..+ .++...++|++++|+++++++|..|+.. |++||+++.++++||++|++++|+|
T Consensus 48 ~~~gW~~~~~~~gi~V~~k~~~-~~~~~~~~K~~~~v~~~~~~v~~~ll~d----r~~Wd~~~~~~~vle~id~~~~I~y 122 (237)
T 2pso_A 48 KFKGWVTCSSTDNTDLAFKKVG-DGNPLKLWKASVEVEAPPSVVLNRVLRE----RHLWDEDFVQWKVVETLDRQTEIYQ 122 (237)
T ss_dssp HCCSCEEECCSSSCEEEEECCC-SSCCCCEEEEEEEESSCHHHHHHHHHHC----GGGTCTTBCCCEEEEEEETTEEEEE
T ss_pred CCCCCEEEecCCCeEEEEEEcC-CCCCcEEEEEEEEEcCChHHHHHHHHhh----hhhHHhhhceEEEEEEcCCCcEEEE
Confidence 4789999999999999999642 2355689999999999999987655542 8999999999999999999999999
Q ss_pred EEeccCcCCCCCCCCeEEEEEEEEEc-CCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEE
Q 004828 311 GTYDPKYLTRWQSKRDFVFSRQWFRG-QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQ 389 (728)
Q Consensus 311 ~~~kp~~~P~~vspRDFV~LRswRr~-~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~ 389 (728)
+++++. +++++||||++|+|+++ ++|+|+|+++||+||++||+ |||||+++++||+|+|+++ ++|+|||
T Consensus 123 ~~~~~p---~p~~~RDfv~~r~~r~~~~~g~~vi~~~Sv~h~~~P~~-g~VR~~~~~~g~~i~P~~~------~~t~vt~ 192 (237)
T 2pso_A 123 YVLNSM---APHPSRDFVVLRTWKTDLPKGMCTLVSLSVEHEEAQLL-GGVRAVVMDSQYLIEPCGS------GKSRLTH 192 (237)
T ss_dssp EEECCS---SSCCCEEEEEEEEEESCCGGGCEEEEEEECCCTTCCCC-SSEECCEEEEEEEEEECST------TCEEEEE
T ss_pred EEecCC---CCcCCeEEEEEEEEEEECCCCEEEEEEEcccCCCCCCC-CcEEEEEeccEEEEEECCC------CCEEEEE
Confidence 999865 46999999999999974 67999999999999999999 9999999999999999965 6799999
Q ss_pred EEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhcCCCCC
Q 004828 390 MLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANPALK 435 (728)
Q Consensus 390 I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~~~~~ 435 (728)
++++||+||+ |.|++.+... .+...+.+||+.|++.....
T Consensus 193 ~~~~Dp~G~i---P~~ln~~~~~---~~~~~l~~LR~~~~~~~~~~ 232 (237)
T 2pso_A 193 ICRIDLKGHS---PEWYSKGFGH---LCAAEVARIRNSFQPLIAEG 232 (237)
T ss_dssp EEEECCSSSC---TTTTTTHHHH---HHHHHHHHHHHTTSCC----
T ss_pred EEEeCCCCCc---hHHHHHHHHH---HHHHHHHHHHHHHHhhcCCC
Confidence 9999999999 7776554444 44468999999999875433
No 6
>1em2_A MLN64 protein; beta barrel, lipid binding protein; HET: TAR; 2.20A {Homo sapiens} SCOP: d.129.3.2
Probab=100.00 E-value=2.1e-33 Score=283.93 Aligned_cols=187 Identities=18% Similarity=0.240 Sum_probs=160.7
Q ss_pred ccCCCCEEEEEe-CCEEEEEEecCCCCCcccEEEEEEeecCCHHHHH-HHHHcCCCcccccccCCCCceEEEEeecCceE
Q 004828 230 IEAHEWKCVRTL-NGVRIFEDVADSKSGRGVLVKAVGVIDASADTVF-EVVLNLERHQRYEWDMLTGDLELVDSYDGHYD 307 (728)
Q Consensus 230 ~a~sgW~l~~~k-ngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~Vf-dlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TD 307 (728)
.+.+||++..+. +|++||++..+. .+..+|++++|+++|++|| +++.|.+. |++||+++.++++|+++|++++
T Consensus 39 ~~~~~W~~~~~~~~g~~vy~~~~~~---~g~~~k~~~~v~~~~~~v~~~~~~d~~~--r~~Wd~~~~~~~vle~~~~~t~ 113 (229)
T 1em2_A 39 AQEENWKFEKNNEYGDTVYTIEVPF---HGKTFILKTFLPCPAELVYQEVILQPER--MVLWNKTVTACQILQRVEDNTL 113 (229)
T ss_dssp TTGGGCEEEEECTTCCEEEEEEETT---TEEEEEEEEEESSCHHHHHHHTTTCHHH--HTTTCTTEEEEEEEEEETTTEE
T ss_pred hCCCCCEEEEecCCCCEEEEEecCC---CCceEEEEEEecCCHHHHHHHHHhCccc--hhhcccccceEEEEEecCCCeE
Confidence 345799999997 899999997642 3458999999999999999 77777765 9999999999999999999999
Q ss_pred EEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEE
Q 004828 308 VVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLV 387 (728)
Q Consensus 308 IiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~V 387 (728)
|+|++.+|. +++++++||||++|+|++.+ +.|+|+.+||.||.+||++|||||+++++||+|+|+++ ++++|+|
T Consensus 114 I~~~~~~p~-~~~~~~~RDfv~~r~~~~~~-~~~vi~~~Sv~~~~~P~~~~~VR~~~~~~g~~i~p~~~----~~~~t~v 187 (229)
T 1em2_A 114 ISYDVSAGA-AGGVVSPRDFVNVRRIERRR-DRYLSSGIATSHSAKPPTHKYVRGENGPGGMIVLKSAS----NPRVCTF 187 (229)
T ss_dssp EEEEEECCB-TTTTBCCEEEEEEEEEEECS-SEEEEEEEECCCTTSCCCTTSEECEECSEEEEEEECSS----CTTCEEE
T ss_pred EEEEEecCc-CCCCcCCCeeEEEEEEEEcC-CEEEEEEecccCCCCCCCCCCEeeeecccEEEEEecCC----CCCcEEE
Confidence 988877653 23579999999999999985 56999999999999999999999999999999999975 3478999
Q ss_pred EEEEeEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhcCC
Q 004828 388 TQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGANP 432 (728)
Q Consensus 388 T~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~~ 432 (728)
||++++||+||+ |.|. +...+...|+..+.+||+++++..
T Consensus 188 t~~~~~Dp~G~i---P~~l--~n~~~~~~~~~~~~~Lr~~~~~~~ 227 (229)
T 1em2_A 188 VWILNTDLKGRL---PRYL--IHQSLAATMFEFAFHLRQRISELG 227 (229)
T ss_dssp EEEECEECCSSS---CHHH--HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCC---CHHH--HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999 5432 445566678899999999998754
No 7
>3qsz_A STAR-related lipid transfer protein; structural genomics, PSI-biology; 2.39A {Xanthomonas axonopodis PV}
Probab=99.97 E-value=2.1e-29 Score=246.73 Aligned_cols=179 Identities=16% Similarity=0.181 Sum_probs=152.6
Q ss_pred CCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEE
Q 004828 232 AHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYG 311 (728)
Q Consensus 232 ~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~ 311 (728)
+++|++..+++|++||++..+. +....+|++++|+++|+++|++|.|.+. |++||+.+.++++|++ +++++|+|+
T Consensus 2 ~~~W~~~~~~~gv~v~~~~~~~--~~~~~~k~~~~v~~s~~~v~~~l~D~~~--~~~W~~~~~~~~vle~-~~~~~i~y~ 76 (189)
T 3qsz_A 2 QDGWSLAKDAEGIKVYVRNVEG--SPLREFRGEVRLKAAADDVVKVLRDANA--FRQWMPDVAASELLKA-TDTEQYHYL 76 (189)
T ss_dssp -CCCEEEEEETTEEEEEECCTT--CSSCEEEEEEEESSCHHHHHHHHHCGGG--GGGTSTTEEEEEEEEE-CSSEEEEEE
T ss_pred CCCCEEEEcCCCEEEEEEeCCC--CCeEEEEEEEEEECCHHHHHHHHHhHHH--hhhHHHhcCEEEEEee-cCCceEEEE
Confidence 5799999999999999997542 3457899999999999999999999986 9999999999999999 999999999
Q ss_pred EeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEE
Q 004828 312 TYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQML 391 (728)
Q Consensus 312 ~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~ 391 (728)
.++.. +++++||||++|+|++..+|.|+|...| .||.+|+++|+||+.+..+||+|+| ++ ++|+|||++
T Consensus 77 ~~~~p---~p~~~RD~v~~~~~~~~~~g~~~i~~~~-~~~~~P~~~~~VR~~~~~~~~~i~p-~~------~~t~vt~~~ 145 (189)
T 3qsz_A 77 DNSAP---WPVSNRDGVYHFTYEKAGDGAITVRVEA-VPDYLPLRKGKVRIPRAKGQWTLVP-DA------DGVDVTYQM 145 (189)
T ss_dssp EECCS---SSCCCEEEEEEEEEEECTTSCEEEEEEE-CTTSSCCCTTSEECCCEEEEEEEEE-CS------SSEEEEEEE
T ss_pred EeecC---CCcCCcceEEEEEEEECCCCeEEEEEEc-CCCccCCCCCeEEeeEeeEEEEEEE-CC------CeEEEEEEE
Confidence 88854 4699999999999999877888877776 7999999999999999999999999 54 579999999
Q ss_pred eEecCCccccccCCcccchhhhHHHHHHHHHHHHHHhhcC
Q 004828 392 EIHSSGWCRWKKNSSTKFEKTTHFALLSQVAGLKEYIGAN 431 (728)
Q Consensus 392 qvD~KGwl~w~p~~~s~~~~~i~~~mL~~Va~LRe~~~~~ 431 (728)
++||+||+ |.|+ +...+...+...+.+||+.++.-
T Consensus 146 ~~dp~G~i---P~~l--vn~~~~~~~~~~l~~L~k~~~~~ 180 (189)
T 3qsz_A 146 HASPGGSI---PSWL--ANQTVVETPFGTLKALRSHLRQA 180 (189)
T ss_dssp EECSCSSS---CHHH--HHHTTTHHHHHHHHHHHHHHTC-
T ss_pred EeCCCCCC---CHHH--HHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999 4322 12223334557888999888764
No 8
>2e3n_A Lipid-transfer protein CERT; ceramide transfer, lipid transport; HET: 6CM; 1.40A {Homo sapiens} PDB: 2e3m_A* 2e3o_A* 2e3p_A* 2e3q_A* 2e3r_A* 2e3s_A 2z9y_A* 3h3q_A* 3h3r_A* 3h3s_A* 3h3t_A* 2z9z_A*
Probab=99.96 E-value=7.9e-29 Score=254.55 Aligned_cols=193 Identities=15% Similarity=0.242 Sum_probs=152.3
Q ss_pred ccccCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEeec-CCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCce
Q 004828 228 DAIEAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVID-ASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY 306 (728)
Q Consensus 228 ~~~a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvVd-aspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~T 306 (728)
.+.+..+|+++.+++|++||++..+..+.....+|+.+++. ++|++||++|+|.+. |++||+++.++++||++|+++
T Consensus 42 ~~~~~~~W~~~~~~~gv~vy~~~~~~~g~~~~~~K~~~~~~~~~~~~v~~~l~d~~~--r~~Wd~~~~~~~vle~i~~~~ 119 (255)
T 2e3n_A 42 DVGGDANWQLVVEEGEMKVYRREVEENGIVLDPLKATHAVKGVTGHEVCNYFWNVDV--RNDWETTIENFHVVETLADNA 119 (255)
T ss_dssp CCTTCTTEEEEEEETTEEEEEECCEETTEECCCEEEEEEEETCCHHHHHHHHHCGGG--HHHHCCSEEEEEEEEEEETTE
T ss_pred hcCCCCCcEEEEeCCCEEEEEEEcCCCCceeeeEEEEEEEcCCCHHHHHHHHhCcch--HhhhhhhcceeEEEEEcCCCC
Confidence 34456899999999999999996432221223689988875 899999999999876 999999999999999999999
Q ss_pred EEEEEEeccCcCCCCCCCCeEEEEEEEEEc----CC--CeEEEEEeeccCCCCCCCCCeeeEE---EcCeeEEEEecCCC
Q 004828 307 DVVYGTYDPKYLTRWQSKRDFVFSRQWFRG----QD--GTYTILQFPAVHKKRPPKSGYRRTK---INPSTWEIRSLNLP 377 (728)
Q Consensus 307 DIiY~~~kp~~~P~~vspRDFV~LRswRr~----~D--GsYvIa~~SV~Hp~~Pp~~G~VRAe---i~~sGylI~P~~~~ 377 (728)
+|+|++++.. +++++||||++|+|++. ++ +.|+++.+|+.||.+|+++|||||+ ++++||+|+|..+.
T Consensus 120 ~i~y~~~~~p---~p~s~RDfV~~r~~~~~~~~~~~g~~~~~i~~~Sv~~~~~P~~~g~VR~~~~~~~~~~~~i~~~~g~ 196 (255)
T 2e3n_A 120 IIIYQTHKRV---WPASQRDVLYLSVIRKIPALTENDPETWIVCNFSVDHDSAPLNNRCVRAKINVAMICQTLVSPPEGN 196 (255)
T ss_dssp EEEEEEECCC---TTSCCEEEEEEEEEEEECCSSTTSCCEEEEEEEECCCTTSCCCSSSEECEEEEEEEEEEEEC---CC
T ss_pred EEEEEEeecC---CCcCCceeEEEEEEEeccccccCCCCEEEEEEeccCCCCCCCCCCCEEEEEEeeeeeeeEeccCCCC
Confidence 9999998854 46899999999999986 22 4899999999999999999999999 57899999997320
Q ss_pred CC--CCCCceEEEEEEeEecCCccccccCCc-ccchhhhHHHHHHHHHHHHHHhhcC
Q 004828 378 MG--SNGAKCLVTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYIGAN 431 (728)
Q Consensus 378 ~~--~~~~~c~VT~I~qvD~KGwl~w~p~~~-s~~~~~i~~~mL~~Va~LRe~~~~~ 431 (728)
-. .++++|+|||++++||+||+ |.|+ +.+.+ ..+...+.+||+++..+
T Consensus 197 ~~l~~~~~~t~vt~~~~~Dp~G~i---P~~lvn~~~~---~~~~~~l~~L~k~v~~~ 247 (255)
T 2e3n_A 197 QEISRDNILCKITYVANVNPGGWA---PASVLRAVAK---REYPKFLKRFTSYVQEK 247 (255)
T ss_dssp CCCCGGGEEEEEEEEEEEECSSCC---CHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cccccCCCcEEEEEEEEeCCCCcc---CHHHHHHHHh---ccccHHHHHHHHHHHHh
Confidence 00 02368999999999999999 4432 22223 33446778888887653
No 9
>1ln1_A PC-TP, phosphatidylcholine transfer protein; start domain, lipid binding protein; HET: DLP; 2.40A {Homo sapiens} SCOP: d.129.3.2 PDB: 1ln2_A* 1ln3_A*
Probab=99.96 E-value=2e-28 Score=243.64 Aligned_cols=180 Identities=19% Similarity=0.190 Sum_probs=151.0
Q ss_pred cCCCCEEEEEeCCEEEEEEecCCCCCcccEEEEEEee-cCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEE
Q 004828 231 EAHEWKCVRTLNGVRIFEDVADSKSGRGVLVKAVGVI-DASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVV 309 (728)
Q Consensus 231 a~sgW~l~~~kngVrVy~~~~~~~~s~~~~~Ka~gvV-daspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIi 309 (728)
+..+|+++.+++|++||++..+. +....+|++++| +++|++||++|+|.+. |++||+++.++++|+. ++ ++|+
T Consensus 26 ~~~~W~~~~~~~~v~v~~~~~~~--~~~~~~k~~~~i~~~~~~~v~~~l~d~~~--r~~Wd~~~~~~~vle~-~~-~~i~ 99 (214)
T 1ln1_A 26 AGADWQLLVETSGISIYRLLDKK--TGLYEYKVFGVLEDCSPTLLADIYMDSDY--RKQWDQYVKELYEQEC-NG-ETVV 99 (214)
T ss_dssp TTTTCEEEEEETTEEEEEEEETT--TTEEEEEEEEEETTSCHHHHHHHHHCHHH--HHHHCTTEEEEEEEEE-TT-EEEE
T ss_pred CCCCcEEEEECCCeEEEEeccCC--CCcEEEEEEEEECCCCHHHHHHHHcCHHH--HHHHHHHHhhEEEecc-CC-CEEE
Confidence 46799999999999999996532 345789999999 5999999999999865 9999999999999998 55 7899
Q ss_pred EEEeccCcCCCCCCCCeEEEEEEEEEc-CCC--eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceE
Q 004828 310 YGTYDPKYLTRWQSKRDFVFSRQWFRG-QDG--TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCL 386 (728)
Q Consensus 310 Y~~~kp~~~P~~vspRDFV~LRswRr~-~DG--sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~ 386 (728)
|++++.. +++++||||++|+|++. ++| .|+++.+||+||.+|+++|+|||++..+||+|+|+++ ++|+
T Consensus 100 ~~~~~~p---~p~~~RD~v~~~~~~~~~~~g~~~~~i~~~Sv~~p~~P~~~~~VR~~~~~~~~~i~p~~~------~~t~ 170 (214)
T 1ln1_A 100 YWEVKYP---FPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAIESDGK------KGSK 170 (214)
T ss_dssp EEEECCC---TTSCCEEEEEEEEEEEECSTTCCEEEEEEEECCBTTBCCCTTSEEECCEEEEEEEEECSS------SSEE
T ss_pred EEEEEcC---CCCCCceEEEEEEEEecccCCCeEEEEEEecccCCCCCCCCCcEEEEEEEEEEEEecCCC------CceE
Confidence 9999854 45899999999999875 355 4889999999999999999999999999999999864 6799
Q ss_pred EEEEEeEecCCccccccCCc-ccchhhhHHHHHHHHHHHHHHhhcC
Q 004828 387 VTQMLEIHSSGWCRWKKNSS-TKFEKTTHFALLSQVAGLKEYIGAN 431 (728)
Q Consensus 387 VT~I~qvD~KGwl~w~p~~~-s~~~~~i~~~mL~~Va~LRe~~~~~ 431 (728)
|||++++||+||+ |.|. +.+.+.. +...+.+||+.+..-
T Consensus 171 v~~~~~~Dp~G~i---P~~l~n~~~~~~---~~~~l~~l~k~~~~y 210 (214)
T 1ln1_A 171 VFMYYFDNPGGQI---PSWLINWAAKNG---VPNFLKDMARACQNY 210 (214)
T ss_dssp EEEEEEECCSSCC---CHHHHHHHHHTH---HHHHHHHHHHHHHTC
T ss_pred EEEEEEECCCCcc---cHHHHHHHHHHH---hHHHHHHHHHHHHhc
Confidence 9999999999999 4433 3333333 346778888877643
No 10
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.33 E-value=1.1e-12 Score=120.83 Aligned_cols=106 Identities=15% Similarity=0.180 Sum_probs=74.9
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCc---ceeeeec-CceeEeeccceeeeCceEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKP---IRRGVIG-PTLMVEELGRRRFNHGDVYV 119 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~p---ir~~~i~-~~~rv~d~Gr~~~~~~~~yv 119 (728)
..+.+|||||.-|. + ...-++|||||+++.|.|||.++...+...| ...|+|| .+|.|+ ...+. +.+.-|+
T Consensus 10 ~~~~k~G~L~K~g~--~-~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~-~~~~~-~~~k~~~ 84 (124)
T 2w2x_D 10 DEHKQQGELYMWDS--I-DQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVV-KAPQG-KNQKSFV 84 (124)
T ss_dssp ---CCEEEEEEEET--T-TTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEE-ECTTC-BTTBSEE
T ss_pred hhcceeEEEEEECC--C-CCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEE-EccCC-cCCCCEE
Confidence 56679999999774 2 3446999999999999999976432112234 3456665 344554 33332 2344589
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
|.|++...+.+.+.|+|.|.||+..||+||+.|+.
T Consensus 85 F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~ 119 (124)
T 2w2x_D 85 FILEPKQQGDPPVEFATDKVEELFEWFQSIREITW 119 (124)
T ss_dssp EEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence 99999887778899999999999999999999984
No 11
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.3e-10 Score=101.35 Aligned_cols=102 Identities=12% Similarity=0.256 Sum_probs=71.7
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeC--ceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRG--KYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~--~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~ 121 (728)
+.+.++|||+.-|. ....| ++|||||++ ..|.|||.+.... ..|.....+..+. |+.... .-+.|.
T Consensus 6 ~~~~~~G~L~K~~~--~~~~W-k~R~fvL~~~~~~L~Yyk~~~~~~--~~~~g~I~L~~~~-v~~~~~------~~~~F~ 73 (120)
T 2d9x_A 6 SGENVYGYLMKYTN--LVTGW-QYRFFVLNNEAGLLEYFVNEQSRN--QKPRGTLQLAGAV-ISPSDE------DSHTFT 73 (120)
T ss_dssp SCCCCEEEEEEEEE--TTTEE-EEEEEEECTTTCEEEEESSGGGSS--SCCSEEEECTTCC-EECCSS------SSSCEE
T ss_pred CCCcEEEEEEecCC--CCCCc-eEEEEEEECCCCEEEEEecCcccC--CCccceEEcceEE-EEecCC------CCCEEE
Confidence 45679999999873 23344 999999994 7999999766432 3455555555543 443221 126778
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHH
Q 004828 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVE 159 (728)
Q Consensus 122 ~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~~~ 159 (728)
|.... .+.+.|.|.|.+|+..|+++|+.|+......
T Consensus 74 i~~~~--~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~ 109 (120)
T 2d9x_A 74 VNAAS--GEQYKLRATDAKERQHWVSRLQICTQHHTEA 109 (120)
T ss_dssp ECCSS--SCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCC--CCEEEEECCCHHHHHHHHHHHHHHHHHhhhh
Confidence 87542 4678999999999999999999999744433
No 12
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.04 E-value=1.5e-09 Score=94.97 Aligned_cols=102 Identities=14% Similarity=0.206 Sum_probs=72.6
Q ss_pred cceeeeEEEEEcccc-c-ccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 45 YFEYFGWVYHMGTNS-I-GHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 45 ~~~~eGw~y~~~~~~-~-g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
.+.++|||+.-|... + +..+ ++|||||.+..|.|||.... ..|.....+.++..+.....+ ...+.-|.|.|
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~W-k~R~fvL~~~~L~yy~~~~~----~~~~g~i~L~~~~v~~~~~~~-~~~~~~~~F~i 75 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEW-QKRWCVVSRGLFYYYANEKS----KQPKGTFLIKGYSVRMAPHLR-RDSKKESCFEL 75 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEE-EEEEEEEETTEEEEESSTTC----SSCSEEEECTTCEEEECGGGC-SSGGGGGEEEE
T ss_pred CccEEEEEEEcCCCCCccccCc-eeeEEEEeCCEEEEecCCCC----CCCCEEEEecceEEEeCCccc-cccCCcceEEE
Confidence 467999999988653 3 3555 89999999999999996542 456666666666533321111 11222367777
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
... ..+.+.|.|.|.+|+..|+++|+.|++
T Consensus 76 ~~~--~~r~~~l~a~s~~e~~~Wi~ai~~~i~ 105 (108)
T 1u5d_A 76 TSQ--DRRTYEFTATSPAEARDWVDQISFLLK 105 (108)
T ss_dssp ECS--SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EcC--CCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 753 236788999999999999999999985
No 13
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.02 E-value=3e-09 Score=96.53 Aligned_cols=100 Identities=13% Similarity=0.212 Sum_probs=72.7
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
..+.++|||+..|.+. ...+ ++|||||++..|.|||.+.. ..|.....+. +|.|+....+...++ -|+|.|.
T Consensus 19 ~~~~~~G~L~K~~~~~-~~~W-k~R~fvL~~~~L~yy~~~~~----~~~~g~i~L~-~~~v~~~~~~~~~~~-~~~F~i~ 90 (128)
T 2dkp_A 19 APVVRRGWLYKQDSTG-MKLW-KKRWFVLSDLCLFYYRDEKE----EGILGSILLP-SFQIALLTSEDHINR-KYAFKAA 90 (128)
T ss_dssp SCCCEEEEEEEECCSS-SCCE-EEEEEEEETTEEEEESSTTC----CSEEEEECGG-GSEEEECCGGGCCSS-CSEEEEE
T ss_pred CCcEEEEEEEEeCCCC-CCCc-eeEEEEEeCCEEEEECCCCC----cccceEEEcC-ceEEEEcCCcccCCC-CeEEEEE
Confidence 4566999999987643 3344 99999999999999996542 3555555553 456665443332222 2688887
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.+. .+.+.|.|.|.+|+..|+++|++|+
T Consensus 91 ~~~--~r~~~l~a~s~~e~~~Wi~al~~a~ 118 (128)
T 2dkp_A 91 HPN--MRTYYFCTDTGKEMELWMKAMLDAA 118 (128)
T ss_dssp CSS--SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCC--CCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 642 4678899999999999999999997
No 14
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=3.7e-09 Score=95.11 Aligned_cols=101 Identities=10% Similarity=0.184 Sum_probs=72.0
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
..+.++|||+.-|.+. ...+ ++|||||.+..|.|||.... ..|.....+..++ |...+.....++ =|.|.|.
T Consensus 20 ~~~~~~G~L~K~~~~~-~~~W-k~R~fvL~~~~L~yy~~~~~----~~~~g~i~L~~~~-v~~~~~~~~~~~-~~~F~i~ 91 (122)
T 2yry_A 20 APVTKAGWLFKQASSG-VKQW-NKRWFVLVDRCLFYYKDEKE----ESILGSIPLLSFR-VAAVQPSDNISR-KHTFKAE 91 (122)
T ss_dssp CCEEEEEEEEEECCSS-SCCE-EEEEEEEETTEEEEESSTTC----CSCCEEEESTTCC-CEECCTTCSCSS-SSEEEEE
T ss_pred CCccEEEEEEEECCCC-CCCc-EEEEEEEeCCEEEEECCCCC----CCcccEEEcCCCE-EEEcCccccCCc-ccEEEEe
Confidence 4567999999987543 2445 99999999999999996643 3465566665554 544333222222 2677775
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.. ..+.+.|.|.|.+|+..|+++|+.|+.
T Consensus 92 ~~--~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 92 HA--GVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp CS--SSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred cC--CCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 32 357789999999999999999999973
No 15
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.02 E-value=1.2e-09 Score=102.07 Aligned_cols=99 Identities=15% Similarity=0.279 Sum_probs=73.1
Q ss_pred CCCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEE
Q 004828 42 EKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (728)
Q Consensus 42 ~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~ 121 (728)
.++.+.++|||+.-| ....+ ++|||||+++.|.|||.+.. ..|+-+..+.++..++.. ..+.=|.|.
T Consensus 4 ~~~~v~k~GwL~K~g---~~k~W-krRWfVLk~~~L~yyk~~~~----~~p~G~I~L~~~~v~~~~-----~~~~~~~F~ 70 (130)
T 1v88_A 4 GSSGIVMADWLKIRG---TLKSW-TKLWCVLKPGVLLIYKTQKN----GQWVGTVLLNACEIIERP-----SKKDGFCFK 70 (130)
T ss_dssp SSSSCCEEEEEEECC---SSSSC-EEEEEEEETTEEEEESCSSS----CCCCEEEECSSCEECCCC-----TTTSSCEEE
T ss_pred CCCceEEEeEEEEeC---CCCCc-eEEEEEEECCEEEEECCCCC----CCceEEEEcCCCEEEECC-----CCCCCeEEE
Confidence 346677999999844 33455 99999999999999997643 456666666665543321 122338899
Q ss_pred EEeccCcC---------------------cceeeeccCHHHHHHHHHHHHHHH
Q 004828 122 LYNRLDES---------------------KKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 122 ~yn~~~~~---------------------~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
|++...++ +...|.|.|.+|+..||+||+.|+
T Consensus 71 i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~ 123 (130)
T 1v88_A 71 LFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELAL 123 (130)
T ss_dssp EECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHH
T ss_pred EEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 99765432 336799999999999999999998
No 16
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.00 E-value=8e-10 Score=95.68 Aligned_cols=93 Identities=11% Similarity=0.174 Sum_probs=68.8
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEec
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~ 125 (728)
+..+|||+.-|. +-.+| ++|||||++..|.||+.+.... ..|+-...+..+..+.+.... +.|.|..
T Consensus 1 V~k~G~L~K~g~--~~k~W-kkR~FvL~~~~L~Yy~~~~~~~--~~~~~~i~l~~~~~~~~~~~~-------~~F~i~~- 67 (94)
T 2rsg_A 1 VERCGVLSKWTN--YIHGW-QDRWVVLKNNALSYYKSEDETE--YGCRGSICLSKAVITPHDFDE-------CRFDISV- 67 (94)
T ss_dssp CCEEEEEEEESS--STTCE-EEEEEEEETTEEEEESSTTGGG--TCCSEEEETTTCEEEECSSCS-------SEEEEEE-
T ss_pred CCEEEEEEEeCC--CCCCc-eEEEEEEECCEEEEEEeccccc--ccceeeEecceeeeecCcccc-------eeEEEEe-
Confidence 357999999763 34455 9999999999999999765433 456666666666555554332 3455654
Q ss_pred cCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 126 LDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 126 ~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.++...|.|.|.+|+..|++||++|+
T Consensus 68 --~~r~~~l~A~s~~e~~~Wi~aLq~Ak 93 (94)
T 2rsg_A 68 --NDSVWYLRAQDPDHRQQWIDAIEQHK 93 (94)
T ss_dssp --TTEEEEEECCSSCCTHHHHHHHHHHC
T ss_pred --CCeEEEEECCCHHHHHHHHHHHHhhc
Confidence 35678999999999999999999984
No 17
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=98.99 E-value=2.9e-09 Score=98.38 Aligned_cols=101 Identities=9% Similarity=0.199 Sum_probs=74.3
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceee-------eCceEE
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF-------NHGDVY 118 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~-------~~~~~y 118 (728)
+..+|||++-|. +..+| ++|||||.+++|.|||.+.... +..|+-++.+. .|.|+..-.+-. +..-.|
T Consensus 6 ~~k~G~L~Kk~~--~~k~W-~~rwfVL~~~~L~yyK~~~~~~-d~~P~gsI~L~-~c~v~~~~~~~~~~~~~~~~~~~~F 80 (120)
T 4a6h_A 6 EIKSGFLERRSK--FLKSY-SKGYYVLTPNFLHEFKTADRKK-DLVPVMSLALS-ECTVTEHSRKNSTSSPNSTGSDAKF 80 (120)
T ss_dssp CSEEEEEEEEET--TTTEE-EEEEEEECSSEEEEESSCCTTT-CCSCSEEEEGG-GEEEEEECCCCC---------CCEE
T ss_pred ccEEEEEEEcCC--CCCCC-ccEEEEEeCCEEEEEcCCCcCc-CCCceEEEECC-CCEEEEcccccccccccccCCCcEE
Confidence 679999999654 66677 9999999999999999876443 46788888884 677766444321 122234
Q ss_pred EEEEEeccC----cCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 119 VMRLYNRLD----ESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 119 v~~~yn~~~----~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
+| ..+.. .++...|.|.|.+|+..|+++|+.|+
T Consensus 81 ~i--~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 81 VL--HAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EE--EESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EE--EeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 44 43332 24689999999999999999999985
No 18
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=3.5e-09 Score=96.12 Aligned_cols=98 Identities=9% Similarity=0.173 Sum_probs=74.7
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCc--eeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK--YVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~--~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~ 120 (728)
...+.++|||+.-|...+-..+ ++|||||++. .|.|||.... ..|.....+..++.|.+..- .-+.|
T Consensus 5 ~~~~~~~G~L~K~g~~~~~k~W-kkRwfvL~~~~~~L~Yy~~~~~----~~~~g~I~L~~~~~~~~~~~------~~~~F 73 (119)
T 2dhk_A 5 SSGKKLCGYLSKFGGKGPIRGW-KSRWFFYDERKCQLYYSRTAQD----ANPLDSIDLSSAVFDCKADA------EEGIF 73 (119)
T ss_dssp CSCCCCEEEEEECSCSSSSCCC-EEEEEEEETTTTEEEEESSTTC----CSCSEEEEGGGCEEEECTTG------GGCEE
T ss_pred CCCCcEEEEEEecCCCCCCCCc-eeEEEEEECCccEEEEECCCCC----cccccEEECCCCEEEecCCC------CCCEE
Confidence 3556799999998764344566 8999999999 9999996542 35666777777777764211 12477
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.|... .+...|.|.|.+|+..|+++|+.|+.
T Consensus 74 ~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~ 104 (119)
T 2dhk_A 74 EIKTP---SRVITLKAATKQAMLYWLQQLQMKRW 104 (119)
T ss_dssp EEECS---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEeC---CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 77654 67789999999999999999999985
No 19
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=98.98 E-value=1.8e-09 Score=98.03 Aligned_cols=104 Identities=13% Similarity=0.207 Sum_probs=75.1
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeC-ceeeeeccCCCCCC-CCCcceeeeecCceeE-eeccceeeeCceEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRG-KYVEMYKRDPHENP-GIKPIRRGVIGPTLMV-EELGRRRFNHGDVYVM 120 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~-~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv-~d~Gr~~~~~~~~yv~ 120 (728)
+.+.++|||+.-|.. -..+ ++|||||++ ..|.|||.++...| +.+||....+-.+.-+ .+.++ =|.|
T Consensus 6 ~~~~~~G~L~K~g~~--~k~W-kkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~-------~~~F 75 (125)
T 1unq_A 6 VAIVKEGWLHKRGEY--IKTW-RPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPR-------PNTF 75 (125)
T ss_dssp GCEEEEEEEEEECSS--SCCE-EEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSS-------TTEE
T ss_pred CCeeEEeeEEeccCC--ccCc-cCcEEEEecCCEEEEEeCCCCCCCCceeEccceeEEeeeecccccCC-------CCEE
Confidence 456799999997652 2344 999999996 59999998876544 4578887766544222 22222 2577
Q ss_pred EEEecc-CcCcceeeeccCHHHHHHHHHHHHHHHHHHH
Q 004828 121 RLYNRL-DESKKGEIACATAGEARKWMEAFDQAKQQAE 157 (728)
Q Consensus 121 ~~yn~~-~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~ 157 (728)
.|.... ...+...|.|.|.+|+..|++||+.|+.+..
T Consensus 76 ~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~ 113 (125)
T 1unq_A 76 IIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLK 113 (125)
T ss_dssp EEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 777643 3456778999999999999999999997443
No 20
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.2e-09 Score=95.53 Aligned_cols=96 Identities=10% Similarity=0.132 Sum_probs=68.7
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
..+.++|||+.-|.. +...+ ++|||||++..|.|||.+.. .|... ++.-+|.|+.. .++. |.|.|.
T Consensus 8 ~~~~~~G~L~K~~~~-~~k~W-kkR~fvL~~~~L~yyk~~~~-----~~~~~-i~l~~~~v~~~-----~~~~-~~F~I~ 73 (114)
T 2da0_A 8 YGSEKKGYLLKKSDG-IRKVW-QRRKCSVKNGILTISHATSN-----RQPAK-LNLLTCQVKPN-----AEDK-KSFDLI 73 (114)
T ss_dssp CCSCEEEEEEEECSS-SCCCE-EEEEEEEETTEEEECCSSCC-----SCCEE-EETTTSEEEEC-----SSSS-SCEEEE
T ss_pred CCccEEEEEEEeCCC-CCCCc-eeEEEEEeCCEEEEEcCCCC-----CCCCE-EEeeeeEEEEC-----CCCC-CEEEEE
Confidence 356699999998853 33555 99999999999999997432 23333 33344445411 1111 477777
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
. ..+.+.|.|.|.+|+..|++||+.|++++
T Consensus 74 ~---~~r~~~l~a~s~~e~~~Wi~al~~~~~~~ 103 (114)
T 2da0_A 74 S---HNRTYHFQAEDEQDYVAWISVLTNSKEEA 103 (114)
T ss_dssp E---TTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred c---CCcEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 4 46788999999999999999999999644
No 21
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=4.1e-09 Score=93.65 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=74.4
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
.+.+.++|||+.-|. .... -++|||||.+..|.|||.+. ...|.....+...+.|+...-.. + .-+.|.|
T Consensus 5 ~~~~~~~G~L~K~~~--~~~~-Wk~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~~v~~~~~~~--~-~~~~F~i 74 (115)
T 2dn6_A 5 SSGVLKQGYMMKKGH--RRKN-WTERWFVLKPNIISYYVSED----LKDKKGDILLDENCCVESLPDKD--G-KKCLFLV 74 (115)
T ss_dssp CCSCSEEEEEEEECT--TSSC-EEEEEEEECSSCEEEESSTT----CSSEEEEECCCTTCEEEEECCCT--T-CCSEEEE
T ss_pred CCCceEEEEEEecCC--CCCC-cEEeEEEEECCEEEEeCCCC----CcccCcEEEecCcEEEEECCCCC--C-CeeEEEE
Confidence 356679999999765 2233 49999999999999999543 24577777777777776532111 1 1256677
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
.. ..+.+.|.|.|.+|+..|+++|+.|+.+.
T Consensus 75 ~~---~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 105 (115)
T 2dn6_A 75 KC---FDKTFEISASDKKKKQEWIQAIHSTIHLL 105 (115)
T ss_dssp EC---SSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred Ee---CCCEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 54 35778999999999999999999999643
No 22
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.97 E-value=4.4e-09 Score=94.14 Aligned_cols=94 Identities=11% Similarity=0.168 Sum_probs=72.9
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
+.+.++|||+.-|... ...-++|||||.+..|.|||.+.. ..|.....+...+.|+..+ . +.|.|.
T Consensus 6 ~~~~~~G~L~K~~~~~--~~~WkkR~fvL~~~~L~yy~~~~~----~~~~g~i~l~~~~~v~~~~-----~---~~F~i~ 71 (115)
T 2cod_A 6 SGKVKSGWLDKLSPQG--KRMFQKRWVKFDGLSISYYNNEKE----MYSKGIIPLSAISTVRVQG-----D---NKFEVV 71 (115)
T ss_dssp SCCCEEEEEEECCSSS--SSCCEEEEEEECSSEEEEEESSCC----SSCCCEEETTTEEEEEEET-----T---TEEEEE
T ss_pred CCccEEEEEEEcCCCC--CCCCceEEEEEECCEEEEEcCCCC----cccCCEEECCcceEEEeCC-----C---CEEEEE
Confidence 4567999999866422 233599999999999999997543 3566677777777888665 1 466666
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
...+.+.|.|.|.+|+..|+++|++|+.
T Consensus 72 ---~~~r~~~l~a~s~~e~~~Wi~~l~~~~~ 99 (115)
T 2cod_A 72 ---TTQRTFVFRVEKEEERNDWISILLNALK 99 (115)
T ss_dssp ---ESSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ---eCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3477899999999999999999999984
No 23
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=98.96 E-value=4.2e-09 Score=98.80 Aligned_cols=109 Identities=11% Similarity=0.136 Sum_probs=76.8
Q ss_pred ccCCCCCcceeeeEEEEEcccc--cccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCc
Q 004828 38 VGDKEKGYFEYFGWVYHMGTNS--IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHG 115 (728)
Q Consensus 38 ~~~~~~~~~~~eGw~y~~~~~~--~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~ 115 (728)
+++..-..+.++|||+.-|... ++..| ++|||||++..|.|||.... ..|.....+.+++.+...+.. ..++
T Consensus 9 ~~~~~~~~~~~~G~L~K~g~~~~~~~k~W-kkR~fvL~~~~L~yyk~~~~----~~~~g~i~L~~~~v~~~~~~~-~~~~ 82 (148)
T 1u5f_A 9 IPAQDLPFVIKAGYLEKRRKDHSFLGFEW-QKRWCALSKTVFYYYGSDKD----KQQKGEFAIDGYDVRMNNTLR-KDGK 82 (148)
T ss_dssp CCGGGCSSEEEEEEEEEECCCSSCSSCSE-EEEEEEEETTEEEEESSTTC----SSCSEEEECTTCEEEECTTSC-SSTT
T ss_pred CChhhCCCccEEEEEEEeCCCCCCcCCCc-eeEEEEEECCEEEEEcCCCC----cccceEEEcCCcEEEECCCcc-cCCC
Confidence 3334446778999999988643 45566 99999999999999986542 456667777666544311111 1112
Q ss_pred eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 116 DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 116 ~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.-|.|.|.... .+.+.|.|.|.+|+..|+++|+.|+.
T Consensus 83 ~~~~F~I~~~~--~r~~~l~a~s~~e~~~Wi~al~~~i~ 119 (148)
T 1u5f_A 83 KDCCFEICAPD--KRIYQFTAASPKDAEEWVQQLKFILQ 119 (148)
T ss_dssp GGGEEEEECTT--SCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CccEEEEECCC--CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 22677777632 46789999999999999999999984
No 24
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.96 E-value=8.7e-09 Score=91.62 Aligned_cols=103 Identities=13% Similarity=0.258 Sum_probs=73.0
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
.+.+.++|||+.-|. ....+ ++|||||.+..|.|||.... ..|.....+.++. |.+....... ..-|+|.|
T Consensus 5 ~~~~~~~G~L~K~g~--~~~~W-k~R~fvL~~~~L~yy~~~~~----~~~~g~i~L~~~~-v~~~~~~~~~-~~~~~f~i 75 (118)
T 1v89_A 5 SSGPIKMGWLKKQRS--IVKNW-QQRYFVLRAQQLYYYKDEED----TKPQGCMYLPGCT-IKEIATNPEE-AGKFVFEI 75 (118)
T ss_dssp SSCEEEEEEEEEECS--SSSCE-EEEEEEEETTEEEEESSSSC----CSCSEEECSTTEE-EEEECCCSSC-CCCCEEEE
T ss_pred CCCCcEEEEEEecCC--CCCCc-cEEEEEEECCEEEEEeCCCC----CCceEEEECCCCE-EEEcCcCccc-CCcceEEE
Confidence 356779999999764 33444 89999999999999997643 3455555555443 4332211111 12467888
Q ss_pred Eecc-----CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 123 YNRL-----DESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 123 yn~~-----~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.... ...+.+.|.|.|.+|+..|+++|++|+.
T Consensus 76 ~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~ 112 (118)
T 1v89_A 76 IPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAG 112 (118)
T ss_dssp EESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHc
Confidence 7643 2567889999999999999999999983
No 25
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=98.93 E-value=4.8e-09 Score=94.61 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=74.2
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
...+.++|||+.-|. ....+ ++|||||.+..|.|||.+.. ..|.....+..+..|+...-+... ..-|.|.|
T Consensus 11 ~~~~~~~G~L~K~g~--~~~~W-k~R~fvL~~~~L~yy~~~~~----~~~~g~i~l~~~~~v~~~~~~~~~-~~~~~F~i 82 (125)
T 1eaz_A 11 DSAVIKAGYCVKQGA--VMKNW-KRRYFQLDENTIGYFKSELE----KEPLRVIPLKEVHKVQECKQSDIM-MRDNLFEI 82 (125)
T ss_dssp -CCCSEEEEEEEECT--TTCCE-EEEEEEECSSEEEEESSTTC----SSCSEEEEGGGCCEEEECTTHHHH-TCSSEEEE
T ss_pred CCCccEEEEEEEeCC--CCCCc-ceEEEEEeCCEEEEEcCCCC----CcceeEEEcccceEEeeccccccC-CcCCEEEE
Confidence 356679999999764 23344 99999999999999996542 457777777777777653211111 12356777
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.. ..+.+.|.|.|.+|+..|+++|+.|+.
T Consensus 83 ~~---~~r~~~l~a~s~~e~~~W~~al~~~i~ 111 (125)
T 1eaz_A 83 VT---TSRTFYVQADSPEEMHSWIKAVSGAIV 111 (125)
T ss_dssp EC---SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred Ee---CCcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 64 367899999999999999999999985
No 26
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=98.92 E-value=5.2e-09 Score=95.01 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=74.9
Q ss_pred CCCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEE
Q 004828 42 EKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (728)
Q Consensus 42 ~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~ 121 (728)
....+.++|||+.-|. ....+ ++|||||.+..|.|||.... ..|.....+..+..|+... ..+.-|.|.
T Consensus 14 ~~~~~~~~G~L~K~g~--~~~~W-k~R~fvL~~~~L~yy~~~~~----~~~~g~i~L~~~~~v~~~~----~~~~~~~F~ 82 (126)
T 1fao_A 14 APSLGTKEGYLTKQGG--LVKTW-KTRWFTLHRNELKYFKDQMS----PEPIRILDLTECSAVQFDY----SQERVNCFC 82 (126)
T ss_dssp -CCTTCEEEEEEEECS--SSCCE-EEEEEEEETTEEEEESSTTC----SSCSEEEEGGGCCEEEEEC----SSSSSSEEE
T ss_pred CCCCccEEEEEEEcCC--CCCCc-ccEEEEEECCEEEEeCCCCC----CCceeEEEccceEEEEecc----cCCCCCEEE
Confidence 3456779999999773 33344 99999999999999995442 4577777777777666421 112235677
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHH
Q 004828 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVE 159 (728)
Q Consensus 122 ~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~~~ 159 (728)
|.. ..+.+.|.|.|.+|+..|+++|+.|+.+.+.+
T Consensus 83 i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~~ 117 (126)
T 1fao_A 83 LVF---PFRTFYLCAKTGVEADEWIKILRWKLSQIRKQ 117 (126)
T ss_dssp EEE---TTEEEEEECSSHHHHHHHHHHHHHHHHTC---
T ss_pred EEe---CCcEEEEECCCHHHHHHHHHHHHHHHHHHHhc
Confidence 765 36788999999999999999999999754433
No 27
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=98.91 E-value=9e-09 Score=92.70 Aligned_cols=100 Identities=14% Similarity=0.268 Sum_probs=70.9
Q ss_pred cceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEe
Q 004828 45 YFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (728)
Q Consensus 45 ~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn 124 (728)
.+.++|||+.-|.+.+ .. -++|||||.+..|.|||.+.. ..|.....+ .+|.|+.......++ .-|.|.|..
T Consensus 10 ~~~~~G~L~K~~~~~~-~~-WkkR~fvL~~~~L~yy~~~~~----~~~~g~i~l-~~~~v~~~~~~~~~~-~~~~f~i~~ 81 (123)
T 1upq_A 10 PVHIRGWLHKQDSSGL-RL-WKRRWFVLSGHCLFYYKDSRE----ESVLGSVLL-PSYNIRPDGPGAPRG-RRFTFTAEH 81 (123)
T ss_dssp CEEEEEEEEEECSSSS-CC-EEEEEEEEETTEEEEESSTTC----CSCCEEEEG-GGCEEEECCSSCTTS-SSSEEEEEC
T ss_pred CceEEEEEEeeCCCCC-CC-ceeEEEEEeCCEEEEECCCCC----cccceEEEC-CCCEEEECCCCccCC-CcEEEEEEC
Confidence 4669999999875443 33 499999999999999996553 334444443 345666554322222 246677764
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 125 RLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 125 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
. ..+.+.|.|.|.+|+..|+++|+.|+.
T Consensus 82 ~--~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 82 P--GMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp T--TSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred C--CCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 3 247788999999999999999999983
No 28
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=98.90 E-value=4.3e-09 Score=96.36 Aligned_cols=107 Identities=20% Similarity=0.256 Sum_probs=70.6
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCce--eEeeccceeeeCceEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTL--MVEELGRRRFNHGDVYVMR 121 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~--rv~d~Gr~~~~~~~~yv~~ 121 (728)
+.+.++|||+.-+... +..--++|||||++..|.|||...... ...|+....+..+. .|+...++...+. |.|.
T Consensus 3 ~~v~~~G~L~K~~~~~-~~~~WkrRwfvL~~~~L~yyk~~~d~~-~~~p~g~I~L~~~~~~~v~~~~~~~~~~~--~~F~ 78 (134)
T 2y7b_A 3 SSVEERGFLTIFEDVS-GFGAWHRRWCVLSGNCISYWTYPDDEK-RKNPIGRINLANCTSRQIEPANREFCARR--NTFE 78 (134)
T ss_dssp CCCCEEEEEEEEEEET-TEEEEEEEEEEEETTEEEEESSHHHHT-TSCCSEEEEGGGBCSSSCEECCTTTCCCT--TEEE
T ss_pred CCceEEeeEEEEcCCC-CCCCcEEEEEEEECCEEEEECCCCccc-ccCceEEEEhhhCccccccccchhhccCC--CEEE
Confidence 4567999999872212 223449999999999999999543322 35565555555543 2554433222222 4667
Q ss_pred EEec--cCcC---------------cceeeeccCHHHHHHHHHHHHHHHH
Q 004828 122 LYNR--LDES---------------KKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 122 ~yn~--~~~~---------------~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
|+.. ...+ +.+.|.|.|.+|+..|++||+.|+.
T Consensus 79 i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 79 LITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp EEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 7653 2111 3589999999999999999999985
No 29
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.90 E-value=1.4e-08 Score=89.91 Aligned_cols=100 Identities=11% Similarity=0.187 Sum_probs=72.1
Q ss_pred CCCCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEE
Q 004828 41 KEKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVM 120 (728)
Q Consensus 41 ~~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~ 120 (728)
..++.+.++|||++-|.. ...+ ++|||||++..|.|||.+.. ..|.....+.+++.+...- +..+ =|+|
T Consensus 3 ~~~~~~~~~G~L~K~~~~--~~~W-k~RwfvL~~~~L~yyk~~~~----~~~~~~i~L~~~~~~~~~~-~~~~---~~~F 71 (109)
T 1wgq_A 3 SGSSGSTMSGYLYRSKGS--KKPW-KHLWFVIKNKVLYTYAASED----VAALESQPLLGFTVTLVKD-ENSE---SKVF 71 (109)
T ss_dssp SCCCSCSCEEEEEEESST--TSCC-EEEEEEEETTEEEEESCTTC----SSCSEEEECSSEEEEECCC-SSCS---SSEE
T ss_pred CCCCCCeEEEEEEeCCCC--CCCc-eeEEEEEeCCEEEEECCCCc----CccCceEECCCCEEEECCC-CCCC---CcEE
Confidence 344667799999986532 2344 99999999999999996542 4567777777766665321 1111 2477
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.|... ..+.+.|.|.|.+|+..|+++|+.|+
T Consensus 72 ~i~~~--~~~~~~~~a~s~~e~~~Wi~al~~a~ 102 (109)
T 1wgq_A 72 QLLHK--GMVFYVFKADDAHSTQRWIDAFQEGT 102 (109)
T ss_dssp EEEET--TEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEeC--CCeEEEEECCCHHHHHHHHHHHHHHh
Confidence 77642 23458899999999999999999997
No 30
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.90 E-value=3e-09 Score=94.82 Aligned_cols=101 Identities=10% Similarity=0.143 Sum_probs=72.2
Q ss_pred CCCcceeeeEEEEEcccccccccceeeeEEEe--CceeeeeccCCCCCCCCCcceeeeecCceeEeec----cceeeeCc
Q 004828 42 EKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIR--GKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL----GRRRFNHG 115 (728)
Q Consensus 42 ~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~--~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~----Gr~~~~~~ 115 (728)
..+.+.++|||+.-|.. ...+ ++|||||. +..|.|||.+.. ..|.....+..++.|+.. |+.....
T Consensus 4 ~~~~~~~~G~L~K~g~~--~~~W-k~R~fvL~~~~~~L~yy~~~~~----~~~~g~i~L~~~~~v~~~~~~~~~~~~~~- 75 (117)
T 1v5u_A 4 GSSGRSYEGILYKKGAF--MKPW-KARWFVLDKTKHQLRYYDHRMD----TECKGVIDLAEVEAVAPGTPTIGAPKTVD- 75 (117)
T ss_dssp SCCSSSEEEEEEECCCS--SSCC-EEEEEEEETTTTEEEEESSSSC----SSCCCEEEGGGEEEEECCCCCTTSCSSSC-
T ss_pred CcCCccEEEEEEecCCC--CCCc-eeeEEEEECCCCEEEEeecCCC----CccceEEEccCcEEEeecCccccccccCC-
Confidence 34567799999997753 2344 99999999 889999996543 346666777777766532 2211111
Q ss_pred eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 116 DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 116 ~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.-|+|.|.. ..+.+.|.|.|.+|+..|+++|+.|+
T Consensus 76 ~~~~F~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i 110 (117)
T 1v5u_A 76 EKAFFDVKT---TRRVYNFCAQDVPSAQQWVDRIQSCL 110 (117)
T ss_dssp TTTCEEEEE---SSCEEEEECSSHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEC---CCceEEEECCCHHHHHHHHHHHHHHh
Confidence 125666633 46788999999999999999999997
No 31
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=98.89 E-value=5.4e-09 Score=91.59 Aligned_cols=92 Identities=12% Similarity=0.156 Sum_probs=63.9
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccC
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLD 127 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~ 127 (728)
|||||+.-|.. ...+ ++|||||++..|.|||.+.... ..|.....+ .+|.|+..--+ . +.|.|...
T Consensus 1 ~eG~L~K~g~~--~k~W-k~R~fvL~~~~L~Yy~~~~~~~--~~~~g~i~L-~~~~v~~~~~~---~---~~F~i~~~-- 66 (103)
T 3rcp_A 1 MEGVLYKWTNY--LTGW-QPRWFVLDNGILSYYDSQDDVC--KGSKGSIKM-AVCEIKVHSAD---N---TRMELIIP-- 66 (103)
T ss_dssp CEEEEEEECCT--TTCE-EEEEEEEETTEEEEESSCC-----CCCSCEEEG-GGCEEECCTTC---S---SEEEEEET--
T ss_pred CceEEEEccCC--CCCe-eceEEEEECCEEEEEecCCccc--CCcccEEEe-eeeEEEEcCCC---C---ceEEEEeC--
Confidence 79999998743 3455 9999999999999999765322 234434444 35555432211 2 24666542
Q ss_pred cCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 128 ESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 128 ~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
..+.+.|.|.|.+|...|+++|+.|+
T Consensus 67 ~~r~~~l~a~s~~e~~~Wi~al~~a~ 92 (103)
T 3rcp_A 67 GEQHFYMKAVNAAERQRWLVALGSSK 92 (103)
T ss_dssp TTEEEEEECSSHHHHHHHHHHHHTTS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 35688999999999999999999996
No 32
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=98.88 E-value=1.3e-08 Score=91.83 Aligned_cols=99 Identities=13% Similarity=0.248 Sum_probs=71.9
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
..+.++|||+.-|.. ...+ ++|||||.+..|.|||.... ..|.....+.++ .|.+.. ..+.-+.|.|.
T Consensus 3 ~~~~~~G~L~K~g~~--~~~W-k~R~fvL~~~~L~yy~~~~~----~~~~g~i~L~~~-~v~~~~----~~~~~~~f~i~ 70 (127)
T 1fgy_A 3 FNPDREGWLLKLGGR--VKTW-KRRWFILTDNCLYYFEYTTD----KEPRGIIPLENL-SIREVL----DPRKPNCFELY 70 (127)
T ss_dssp SSCSEEEEEEEECSS--SCCE-EEEEEEEETTEEEEESSTTC----SSCSEEEECTTC-EEEEEC----CSSCSSEEEEE
T ss_pred CCCceEeEEEEECCC--CCCe-EEEEEEEECCEEEEeCCCCC----CCcceEEECCce-EEEEcc----CCCCCceEEEe
Confidence 346799999998754 2344 89999999999999996532 455556666654 344322 12334678887
Q ss_pred eccCc-------------------CcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 124 NRLDE-------------------SKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 124 n~~~~-------------------~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
+.... .+.+.|.|.|.+|+..|+++|+.|+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~ 120 (127)
T 1fgy_A 71 NPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 120 (127)
T ss_dssp CSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 66432 46789999999999999999999984
No 33
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=98.88 E-value=1.4e-08 Score=89.45 Aligned_cols=100 Identities=15% Similarity=0.254 Sum_probs=68.8
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCc--eeeeeccCCCCCCCCCcceeeeecCceeEeecccee--eeCceEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK--YVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRR--FNHGDVYV 119 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~--~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~--~~~~~~yv 119 (728)
..+.++|||+.-|.. ..++ ++|||||.+. .|.|||... ...|.....+.+ |.|....... ...+.-+.
T Consensus 5 ~~~~~~G~L~K~g~~--~~~W-k~R~fvL~~~~~~L~yyk~~~----~~~~~g~i~L~~-~~v~~~~~~~~~~~~~~~~~ 76 (109)
T 2i5f_A 5 GVIIKQGCLLKQGHR--RKNW-KVRKFILREDPAYLHYYDPAG----AEDPLGAIHLRG-CVVTSVESNSNGRKSEEENL 76 (109)
T ss_dssp CCEEEEEEEEEECTT--TCCE-EEEEEEEETTTTEEEEECTTS----CSSCSEEEECTT-CEEEEECC--------CCSE
T ss_pred CceeEEEEEEEcCCC--CCCc-eEEEEEEeCCCcEEEEECCCC----CCCccEEEECCC-CEEEEccCCcccccCCCceE
Confidence 466799999997652 3344 9999999987 999998653 245666666666 4444322210 01123357
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
|.|.... .+.+.|.|.|.+|+..|+++|+.|+
T Consensus 77 F~i~~~~--~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 77 FEIITAD--EVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp EEEECTT--CCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEeCC--CCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 7777542 3448999999999999999999997
No 34
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=1.1e-08 Score=91.13 Aligned_cols=100 Identities=10% Similarity=0.205 Sum_probs=69.9
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
..+.++|||+..|.+.+ ..+ ++|||||++..|.|||.... ..|.....+..++ |.........+ .-|.|.|.
T Consensus 9 ~~~~~~G~L~K~~~~~~-~~W-k~R~fvL~~~~L~yy~~~~~----~~~~g~i~L~~~~-v~~~~~~~~~~-~~~~F~i~ 80 (117)
T 2d9y_A 9 APVTKAGWLFKQASSGV-KQW-NKRWFVLVDRCLFYYKDEKE----ESILGSIPLLSFR-VAAVQPSDNIS-RKHTFKAE 80 (117)
T ss_dssp CCCCEEEEEEEECTTSS-SCE-EEEEEEEETTEEEEESSTTC----CSCCEEEECSSCE-EEECCTTTTCC-CSSEEEEE
T ss_pred CCeeEEEEEEEeCCCCC-CCc-eEEEEEECCCEEEEECCCCC----CCcCCEEEeCCeE-EEEcCccccCC-CccEEEEE
Confidence 45669999999874432 344 99999999999999996532 3565566565554 44332211111 12567775
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.. ..+.+.|.|.|.+|+..|+++|+.|+
T Consensus 81 ~~--~~r~~~l~a~s~~e~~~Wi~al~~~~ 108 (117)
T 2d9y_A 81 HA--GVRTYFFSAESPEEQEAWIQAMGEAA 108 (117)
T ss_dssp CS--SSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred cC--CCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 33 35778999999999999999999997
No 35
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.86 E-value=1.2e-08 Score=95.49 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=71.1
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeec----cCCCCCCCCCcceeeeecCceeEeec--cceeeeCceE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYK----RDPHENPGIKPIRRGVIGPTLMVEEL--GRRRFNHGDV 117 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK----~~p~~~~~~~pir~~~i~~~~rv~d~--Gr~~~~~~~~ 117 (728)
....++||||.-|.+.+ ..| ++|||||.++.|.||| ++.. ..|+-....++ +.|+.. --+...++
T Consensus 6 ~n~~~~G~L~KqG~~~~-K~W-KrRwFVL~~~~LyYfk~~~~~~~~----~~p~G~I~L~g-~tV~~~~~~~~~~~~k-- 76 (126)
T 1wi1_A 6 SGMKHSGYLWAIGKNVW-KRW-KKRFFVLVQVSQYTFAMCSYREKK----AEPQELLQLDG-YTVDYTDPQPGLEGGR-- 76 (126)
T ss_dssp CCEEEEEEEEEECSSSC-CSC-EEEEEEEEEEETTEEEEEECCSSS----SCCSEEEECSS-CEEEECCCCSSCCSCS--
T ss_pred CCCceeEEEEEeCCCcc-ccc-ceEEEEEeCCEEEEEEcccccccC----CCCceEEECCC-cEEEEecCCcccccCc--
Confidence 34579999999988644 577 8899999999999999 6653 44554444444 566521 11222333
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 118 yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
|.|.+.. +.+..-|+|.|.||-..||+||..|+
T Consensus 77 ~~F~~v~---~~~ty~~~Adseee~~~WikAi~~A~ 109 (126)
T 1wi1_A 77 AFFNAVK---EGDTVIFASDDEQDRILWVQAMYRAT 109 (126)
T ss_dssp SEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eEEEEec---CCceEEEEcCCHHHHHHHHHHHHHHh
Confidence 5666653 35569999999999999999999997
No 36
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=98.83 E-value=2e-08 Score=101.09 Aligned_cols=109 Identities=12% Similarity=0.170 Sum_probs=76.8
Q ss_pred ccCCCCCcceeeeEEEEEccc-c-cccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCc
Q 004828 38 VGDKEKGYFEYFGWVYHMGTN-S-IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHG 115 (728)
Q Consensus 38 ~~~~~~~~~~~eGw~y~~~~~-~-~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~ 115 (728)
+++..-..+.++|||+.-|.. + +...| ++|||||++..|.|||.... ..|.....+.+++.|...-.. ..++
T Consensus 98 ~~~~~l~~v~k~G~L~Kkg~~~~~~~k~W-kkRwfVL~~~~L~Yyk~~~~----~~p~g~I~L~~~~~v~~~~~~-~~~~ 171 (211)
T 1u5e_A 98 IAAQDLPFVIKAGYLEKRRKDHSFLGFEW-QKRWCALSKTVFYYYGSDKD----KQQKGEFAIDGYDVRMNNTLR-KDGK 171 (211)
T ss_dssp CCGGGCSSEEEEEEEEEEEHHHHTTTCCC-EEEEEEEETTEEEEESSTTC----SSCSEEEECTTCEEEECGGGC-SSTT
T ss_pred cChhhcCCccEEEEEEEECCCCCcCCCCc-EeEEEEEECCEEEEEcCCCC----ccceEEEEeCCcEEEEcCCcc-ccCC
Confidence 333344567799999998864 2 44555 99999999999999997653 456666677777766521100 1111
Q ss_pred eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 116 DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 116 ~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.=|.|.|... ..+.+.|.|.|.+|+..|+++|+.|+.
T Consensus 172 k~~~F~I~t~--~~r~~~l~A~s~~e~~~Wi~aL~~ai~ 208 (211)
T 1u5e_A 172 KDCCFEICAP--DKRIYQFTAASPKDAEEWVQQLKFILQ 208 (211)
T ss_dssp GGGEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 1256777653 247789999999999999999999984
No 37
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.83 E-value=3.2e-08 Score=88.09 Aligned_cols=99 Identities=11% Similarity=0.140 Sum_probs=72.5
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
+.+.++|||+.-|.. -..+ ++|||||++..|.|||.+. ...|.....+.+++.|+... -..+.-|.|.|.
T Consensus 3 ~~~~~~G~L~K~g~~--~~~W-k~R~fvL~~~~L~yy~~~~----~~~~~g~i~L~~~~~~~~~~---~~~~~~~~F~i~ 72 (113)
T 1pls_A 3 PKRIREGYLVKKGSV--FNTW-KPMWVVLLEDGIEFYKKKS----DNSPKGMIPLKGSTLTSPCQ---DFGKRMFVFKIT 72 (113)
T ss_dssp CCCSEEEEEEEESSS--SSCC-EEEEEEEETTEEEEESSTT----CSSCSEEEESSSCCEESSCC---SSCCSSSEEEEE
T ss_pred CCCcEEEEEEEeCCC--CCCc-eEEEEEEECCEEEEEeCCC----CCCcceEEEcCCCEEEEecC---CCCCCccEEEEE
Confidence 356799999997642 2334 9999999999999999653 25677777777777654111 012233577776
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
... .+.+.|.|.|.+|+..|+++|+.|+.
T Consensus 73 ~~~--~r~~~l~a~s~~e~~~Wi~ai~~~~~ 101 (113)
T 1pls_A 73 TTK--QQDHFFQAAFLEERDAWVRDINKAIK 101 (113)
T ss_dssp ETT--TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCC--CCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 542 46788999999999999999999985
No 38
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.83 E-value=2e-08 Score=94.17 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=74.6
Q ss_pred CcceeeeEEEEEcccc---cccccceeeeEEEeCc-----eeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCc
Q 004828 44 GYFEYFGWVYHMGTNS---IGHEYCHLRFLFIRGK-----YVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHG 115 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~---~g~~~~~~Ryfvl~~~-----~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~ 115 (728)
..+.++|||+.-|.++ .+..--++|||||.+. .|.|||.++.+ ..|.....+..+..|... ...
T Consensus 16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~---~~~~g~I~L~~~~~~~~~-----~~~ 87 (150)
T 1wg7_A 16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKIS---KEPKGSIFLDSCMGVVQN-----NKV 87 (150)
T ss_dssp CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCS---SCCSEEECTTTCCEECCC-----CSS
T ss_pred CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCC---CCcCcEEecccCEEEecC-----CCC
Confidence 5667999999987653 2333349999999997 99999987632 456666667676555421 122
Q ss_pred eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 116 DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 116 ~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.-|+|.|.... .+.+.|.|.|.+|+..|+.+|+.|+.
T Consensus 88 ~~~~F~i~~~~--~r~~~l~A~s~~e~~~Wi~al~~ai~ 124 (150)
T 1wg7_A 88 RRFAFELKMQD--KSSYLLAADSEVEMEEWITILNKILQ 124 (150)
T ss_dssp CTTEEEEECSS--SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 33677887652 36789999999999999999999997
No 39
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=98.82 E-value=5.9e-09 Score=92.69 Aligned_cols=103 Identities=11% Similarity=0.199 Sum_probs=67.0
Q ss_pred cceeeeEEEEEcccccccccceeeeEEE-eCceeeeeccCCCCCC-CCCcceeeeec--CceeEeeccceeeeCceEEEE
Q 004828 45 YFEYFGWVYHMGTNSIGHEYCHLRFLFI-RGKYVEMYKRDPHENP-GIKPIRRGVIG--PTLMVEELGRRRFNHGDVYVM 120 (728)
Q Consensus 45 ~~~~eGw~y~~~~~~~g~~~~~~Ryfvl-~~~~~~~yK~~p~~~~-~~~pir~~~i~--~~~rv~d~Gr~~~~~~~~yv~ 120 (728)
.+.++|||+.-|. .-..+ ++||||| .+..|.|||.+....| +.+||..+.|+ ..+.|++.-...... .=|.|
T Consensus 4 ~~~~~G~L~K~g~--~~k~W-kkR~fvL~~~~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~-~~~~F 79 (112)
T 3aj4_A 4 AFVKSGWLLRQST--ILKRW-KKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKS-KDCML 79 (112)
T ss_dssp SCSEEEEEEEECS--SSCCE-EEEEEEECTTSEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCC-GGGEE
T ss_pred ceeEEEEEEeeCC--CCCCe-eceEEEEeeCCEEEEEcCCCCCCCCccccccccceeecccccccccCCCCCCC-cCcEE
Confidence 4569999999875 22344 9999999 9999999997764432 23455554433 111222100000011 12466
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.|..+ ..+.+.|.|.|.+|+..|++||++|+
T Consensus 80 ~i~~~--~~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 80 QIVCR--DGKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp EEEET--TSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEec--CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 66542 36778999999999999999999996
No 40
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.82 E-value=7.9e-09 Score=91.75 Aligned_cols=95 Identities=9% Similarity=0.157 Sum_probs=65.7
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
..+.++|||+.. +..--++|||||+++.|.|||.+.. . ..|.-.+.+ .+|.|+.. .. .+.=|+|.|.
T Consensus 6 ~~~~~~G~L~K~-----~~k~Wk~RwfvL~~~~L~yyk~~~~-~--~~~~~~i~l-~~~~v~~~-~~---~~~~~~F~i~ 72 (107)
T 2cof_A 6 SGLETSSYLNVL-----VNSQWKSRWCSVRDNHLHFYQDRNR-S--KVAQQPLSL-VGCEVVPD-PS---PDHLYSFRIL 72 (107)
T ss_dssp CCCTTCCEEEEE-----ETTEEEEEEEEECSSCEEEECSSTT-C--SEEEEEECT-TTCEEECC-CB---TTBSCEEEEE
T ss_pred CCCcEeEEEEEe-----cCCCcceEEEEEECCEEEEEeCCcc-c--CCCeeEEec-cceEEEEC-CC---CCCCeEEEEE
Confidence 456799999996 3334499999999999999997654 2 233322222 34445421 11 2233677777
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.. ..+.+.|.|.|.+|+..|+++|+.|+
T Consensus 73 ~~--~~r~~~l~A~s~~e~~~Wi~al~~~~ 100 (107)
T 2cof_A 73 HK--GEELAKLEAKSSEEMGHWLGLLLSES 100 (107)
T ss_dssp ET--TEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred eC--CCeEEEEEcCCHHHHHHHHHHHHHHH
Confidence 63 25668999999999999999999986
No 41
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=98.81 E-value=2.6e-08 Score=90.75 Aligned_cols=101 Identities=15% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCc--eeeeeccCCCCCCCCCcceeeeecCceeEeeccceee--eCceEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK--YVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRF--NHGDVY 118 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~--~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~--~~~~~y 118 (728)
...+.++|||+.-|. ....+ ++|||||.+. .|.|||... ...|.....+.. |.|+......- ..+.-|
T Consensus 15 ~~~~~~~G~L~K~g~--~~~~W-k~R~fvL~~~~~~L~yy~~~~----~~~~~g~i~L~~-~~v~~~~~~~~~~~~~~~~ 86 (129)
T 1x05_A 15 RGVIIKQGCLLKQGH--RRKNW-KVRKFILREDPAYLHYYDPAG----AEDPLGAIHLRG-CVVTSVESNSNGRKSEEEN 86 (129)
T ss_dssp CSEEEEEEEEEECCS--SCCCC-EEEEEEEEETTTEEEEECSSC----CSSCSEEEECTT-CEEEECCCCCCSSSCSSCS
T ss_pred cCCceEEEEEEecCC--CCCCC-eeEEEEEeCCCCEEEEECCCC----CCcceeEEEccC-CEEEEccCCccccccCCCe
Confidence 456779999999654 23344 8999999986 899998653 245666666666 44543322210 112346
Q ss_pred EEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 119 VMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 119 v~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.|.|.... .+.+.|.|.|.+|+..|++||+.|+
T Consensus 87 ~F~i~~~~--~~~~~l~a~s~~e~~~Wi~al~~~~ 119 (129)
T 1x05_A 87 LFEIITAD--EVHYFLQAATPKERTEWIKAIQMAS 119 (129)
T ss_dssp EEEEECTT--CCCCEEECSSHHHHHHHHHHHHHHH
T ss_pred EEEEEcCC--CCEEEEECCCHHHHHHHHHHHHHHH
Confidence 77777542 3458999999999999999999998
No 42
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.79 E-value=6.2e-08 Score=92.77 Aligned_cols=95 Identities=11% Similarity=0.147 Sum_probs=69.0
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeec-cceeeeCceEEEEEEEe
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL-GRRRFNHGDVYVMRLYN 124 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~-Gr~~~~~~~~yv~~~yn 124 (728)
+.+||||+.-|. .+ ..| ++|||||+++.|.|||.+.... |.....+..++.|++. -.+. .-+.|+|..
T Consensus 18 v~keG~L~Kkg~-~~-k~W-krRWFvLk~~~L~Yyk~~~d~~----~~g~I~L~~~~~~~~~~~~~~----~~~~F~I~t 86 (149)
T 1x1f_A 18 LYFEGFLLIKRS-GY-REY-EHYWTELRGTTLFFYTDKKSII----YVDKLDIVDLTCLTEQNSTEK----NCAKFTLVL 86 (149)
T ss_dssp EEEEEEEEEECT-TC-CSC-EEEEEEEETTEEEEESCSSCSS----CSEECCCSSCCEEEECCCTTS----CCCEEEEEC
T ss_pred ccEEEEEEEeCC-CC-CCc-eeEEEEEcCCEEEEEeCCCccc----cCcEEECCCceEEeeccCCCC----cCcEEEEEc
Confidence 779999999874 22 455 9999999999999999765433 4445555555555332 2211 125677764
Q ss_pred ccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 125 RLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 125 ~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.++...|.|.|.||+..|+.||+.++.
T Consensus 87 ---~~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 87 ---PKEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp ---SSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ---CCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 356788999999999999999999974
No 43
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.78 E-value=3.6e-08 Score=90.99 Aligned_cols=101 Identities=14% Similarity=0.206 Sum_probs=65.2
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEE-eCceeeeeccCCCCCCCCCcceeeeecCceeEeeccce---e---eeCce
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFI-RGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRR---R---FNHGD 116 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl-~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~---~---~~~~~ 116 (728)
+.+.++|||+.-|. .-..| ++||||| ++..|.|||.+.... |..+..+...|.-...|-+ . -+...
T Consensus 6 ~~v~~~G~L~K~g~--~~k~W-kkRwFVL~~~~~L~Yyk~~~~~~----~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~ 78 (130)
T 2d9v_A 6 SGLVRGGWLWRQSS--ILRRW-KRNWFALWLDGTLGYYHDETAQD----EEDRVVIHFNVRDIKVGQECQDVQPPEGRSR 78 (130)
T ss_dssp CCEEEEEEEEEECS--SSCCE-EEEEEEEETTTEEEEESSSSTTS----EEEEEECTTTEEEEEEGGGCSSCCCCSSCCT
T ss_pred CceeEEEEEEeecC--ccCCc-eeeEEEEccCCEEEEEeCCCCCC----cCceEecccceeEEeccccccccCCCCCCCc
Confidence 56779999999764 33456 9999999 899999999665332 2223333322211111100 0 00111
Q ss_pred EEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 117 VYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 117 ~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
=|.|.|.... .+.+.|.|.|.||+..|++||+.|+
T Consensus 79 ~~~F~I~~~~--~r~~~l~A~s~~e~~~Wi~al~~a~ 113 (130)
T 2d9v_A 79 DGLLTVNLRE--GSRLHLCAETRDDAIAWKTALMEAN 113 (130)
T ss_dssp TTEEEEEETT--SCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCC--CCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 2567776532 3568899999999999999999997
No 44
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=98.77 E-value=7.5e-09 Score=90.66 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=61.4
Q ss_pred eeeEEEEEccc-----ccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecC-ceeEeeccceeeeCceEEEEE
Q 004828 48 YFGWVYHMGTN-----SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGP-TLMVEELGRRRFNHGDVYVMR 121 (728)
Q Consensus 48 ~eGw~y~~~~~-----~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~-~~rv~d~Gr~~~~~~~~yv~~ 121 (728)
|||||++-+.. +-+..--++|||||++..|.|||.+....++..+...+.|+- +|.|+-. .. ..+.=|+|+
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~--~~~~~~~F~ 77 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVA-LD--YKKKKHVFK 77 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEEC-SS--CCSSSSEEE
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEc-cc--ccCCccEEE
Confidence 79999998721 123333499999999999999996542100011112223332 1222210 00 111126788
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 122 LYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 122 ~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
|.. ...+.+.|.|.|.+|+..|++||+.|
T Consensus 78 i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 78 LRL--SDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 863 23478899999999999999999875
No 45
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=98.74 E-value=2.3e-08 Score=95.69 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=60.9
Q ss_pred cceeeeEEEEEc-----ccc---cccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecC-ceeEeeccceeeeCc
Q 004828 45 YFEYFGWVYHMG-----TNS---IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGP-TLMVEELGRRRFNHG 115 (728)
Q Consensus 45 ~~~~eGw~y~~~-----~~~---~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~-~~rv~d~Gr~~~~~~ 115 (728)
.+.+||||++-. ..| ....| ++|||||++..|.|||.+.... ..|.....|+. +|.|+-. . ...+
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~W-kkRwfvL~~~~L~yyk~~~~~~--~~~~g~i~l~~~~~~~~~~-~--~~~~ 75 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPW-KQMYVVLRGHSLYLYKDKREQT--TPSEEEQPISVNACLIDIS-Y--SETK 75 (168)
T ss_dssp -CCEEEEEEEEECC------------CC-EEEEEEEETTEEEEESCTTCC----------CEECSSCEEEEC-S--SSCS
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCc-eEEEEEEeCCEEEEEECCcccc--cccCCceEecccceEEEec-c--ccCC
Confidence 457999999521 012 23344 9999999999999999764321 22333333333 1322200 0 0111
Q ss_pred eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 116 DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 116 ~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.=|+|.|... ++.+.|.|.|.+|+..|+++|+.|+.
T Consensus 76 ~~~~F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~ 111 (168)
T 2j59_M 76 RKNVFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSN 111 (168)
T ss_dssp CSSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred CCCEEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 2268888854 36799999999999999999999985
No 46
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.70 E-value=5.9e-08 Score=88.62 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=71.3
Q ss_pred CCCcceeeeEEEEEcccccccccceeeeEEEeCc---eeeeeccCCCCCCCCCcceeeeecCceeEe--eccceeeeCce
Q 004828 42 EKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK---YVEMYKRDPHENPGIKPIRRGVIGPTLMVE--ELGRRRFNHGD 116 (728)
Q Consensus 42 ~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~---~~~~yK~~p~~~~~~~pir~~~i~~~~rv~--d~Gr~~~~~~~ 116 (728)
.+....+.|||++-+ + +.++ ++|+|||.++ +|.|||..- +..|+.++.+.++ .|. +.+.+.- .
T Consensus 4 ~~~~~~~~G~L~k~~--~-~~~W-kkrWfVL~~~~~~~Ly~Yk~~~----d~~p~g~I~L~g~-~V~~~~~~~~~~---~ 71 (112)
T 2coc_A 4 GSSGSLLCGPLRLSE--S-GETW-SEVWAAIPMSDPQVLHLQGGSQ----DGRLPRTIPLPSC-KLSVPDPEERLD---S 71 (112)
T ss_dssp CCSSSSSEEEEEEES--S-SSCE-EEEEEECCTTCTTCEEEECCTT----CSSSCSEECGGGC-EEECCCSSSCCS---S
T ss_pred ccCCceEEEEEEecC--C-CCCc-eEEEEEEECCCccEEEEECCCC----ccCcceEEEcCCC-EEEecCcccccC---C
Confidence 344556889999954 2 7787 9999999985 799999543 2467766666655 666 3443321 2
Q ss_pred EEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 117 VYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 117 ~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
=|+|.|... .+...|+|.|.|++.+|+++|+.|+
T Consensus 72 ~~~Fki~~~---~~~y~f~A~s~e~~~~Wl~al~~A~ 105 (112)
T 2coc_A 72 GHVWKLQWA---KQSWYLSASSAELQQQWLETLSTAA 105 (112)
T ss_dssp SEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCEEEEecC---CeEEEEEcCCHHHHHHHHHHHHHHh
Confidence 468888832 4568999999999999999999996
No 47
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=98.70 E-value=9e-08 Score=89.14 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=72.0
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEec
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNR 125 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~ 125 (728)
+.-+|||+.-. ..+...=.+.|||||.+..|.|||.+....| - -.|--.++.|.|..-.... -=|.|.|||.
T Consensus 12 VirkGWL~k~~-~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~----~-G~IpL~~~~vr~v~~~~~~--rk~~F~l~~~ 83 (125)
T 1dyn_A 12 VIRKGWLTINN-IGIMKGGSKEYWFVLTAENLSWYKDDEEKEK----K-YMLSVDNLKLRDVEKGFMS--SKHIFALFNT 83 (125)
T ss_dssp EEEEEEEEESC-CCGGGTSSEEEEEEEESSEEEEESSTTCSCE----E-EEEECTTEEEEECCSCSSS--SCEEEEEEET
T ss_pred eEEEEEEEEec-CccccCCceeeEEEEeccceeeecCCccccc----c-eEEECCCceEeccCCCCCC--CceEEEEECC
Confidence 67999999832 2344443499999999999999998875543 2 2233366666664322222 3489999997
Q ss_pred cC-----cCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 126 LD-----ESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 126 ~~-----~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
-. ..++++|+|.|.||...||.||..|.
T Consensus 84 d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~ 116 (125)
T 1dyn_A 84 EQRNVYKDYRQLELACETQEEVDSWKASFLRAG 116 (125)
T ss_dssp TSSCSSTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCccccccceEEEEeCCCHHHHHHHHHHHHhCc
Confidence 42 24689999999999999999997773
No 48
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=98.69 E-value=5e-08 Score=94.80 Aligned_cols=105 Identities=8% Similarity=0.025 Sum_probs=73.6
Q ss_pred cceeeeEEEEEcccc--cccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeec--------cce----
Q 004828 45 YFEYFGWVYHMGTNS--IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL--------GRR---- 110 (728)
Q Consensus 45 ~~~~eGw~y~~~~~~--~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~--------Gr~---- 110 (728)
.+.+||||+.-|.++ +++.--++|||||.+..|.|||.+....++..|..+..+...+-|+.. +++
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~ 81 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR 81 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccc
Confidence 356899999977554 565555999999999999999974211113456666666666556533 111
Q ss_pred -----------eeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 111 -----------RFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 111 -----------~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
++.+.. |.|.|... ++.+-|.|.|.+|...|++||+.|+
T Consensus 82 ~~~~~~~~~~~i~~~~~-~~F~I~t~---~rt~yl~A~s~~E~~eWi~aI~~~i 131 (169)
T 1btk_A 82 GEESSEMEQISIIERFP-YPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVI 131 (169)
T ss_dssp ------CCTTHHHHCCC-EEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHH
T ss_pred cCccccccccccccccc-ccEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHH
Confidence 001111 78888653 3678899999999999999999998
No 49
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=98.68 E-value=7.1e-08 Score=97.81 Aligned_cols=100 Identities=11% Similarity=0.203 Sum_probs=78.9
Q ss_pred CCCcceeeeEEEEEccc--ccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEE
Q 004828 42 EKGYFEYFGWVYHMGTN--SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYV 119 (728)
Q Consensus 42 ~~~~~~~eGw~y~~~~~--~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv 119 (728)
..+.+.++|||+.-|.. ++++.--++|||||++..|.|||.+.. ..|.....+..++.|++...+ =|.
T Consensus 54 ~~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~----~~~~g~I~L~~~~~v~~~~~k------~~~ 123 (228)
T 3tfm_A 54 SKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSE----EKLKGTVEVRSAKEIIDNTNK------ENG 123 (228)
T ss_dssp SCCCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTC----CSEEEEEEGGGCSEEEEETTT------TSE
T ss_pred cCCCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCC----cceeEEEEcCCCEEeccCCCC------CcE
Confidence 44667799999998873 466556699999999999999996543 467777778887777765421 156
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
|.|.. .++...|.|.|.+|+..|+++|++|+.
T Consensus 124 F~I~t---~~r~~~l~A~s~~e~~~Wv~aL~~~i~ 155 (228)
T 3tfm_A 124 IDIIM---ADRTFHLIAESPEDASQWFSVLSQVHS 155 (228)
T ss_dssp EEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEc---CCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 77754 467899999999999999999999985
No 50
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.67 E-value=7e-08 Score=87.55 Aligned_cols=106 Identities=10% Similarity=0.066 Sum_probs=69.1
Q ss_pred CcceeeeEEEEEccc-----ccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCc-eeEeeccceeeeCceE
Q 004828 44 GYFEYFGWVYHMGTN-----SIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPT-LMVEELGRRRFNHGDV 117 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~-----~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~-~rv~d~Gr~~~~~~~~ 117 (728)
..+.+||||++-+.. +.+..--++|||||++..|.|||.+....++..|.-...|+-. |.|+-. .+ +.+.=
T Consensus 6 ~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~-~~--~~~r~ 82 (123)
T 1wjm_A 6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVA-FD--YRKRK 82 (123)
T ss_dssp CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEEC-TT--CSSCS
T ss_pred CCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeec-cc--ccCCC
Confidence 556799999986643 3334444999999999999999975443322222222333332 333311 11 11223
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 118 yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
|+|+|... ..+...|.|.|.+|+..|++||+.|+.
T Consensus 83 ~~F~i~~~--~~~~~~f~A~s~~e~~~Wi~ai~~~~~ 117 (123)
T 1wjm_A 83 HVFKLGLQ--DGKEYLFQAKDEAEMSSWLRVVNAAIA 117 (123)
T ss_dssp SEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEc--CCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence 67777653 236788999999999999999999984
No 51
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.66 E-value=9.4e-08 Score=88.67 Aligned_cols=100 Identities=11% Similarity=0.168 Sum_probs=73.4
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEe---CceeeeeccCCCCCC-CCCcceeeeecCceeEeecc-ceeeeCceEEEE
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIR---GKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELG-RRRFNHGDVYVM 120 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~---~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d~G-r~~~~~~~~yv~ 120 (728)
..++|||+.-|+.. ..--++|||||+ |+.|.||| +|.+.+ +..|+.+..+..++.|.+.- ....+.+ |.|
T Consensus 15 ~~~~G~L~K~g~~~--~k~WkrRwFvL~~~~~~~L~Y~k-~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~--~~F 89 (126)
T 1v5p_A 15 NRICGFLDIEDNEN--SGKFLRRYFILDTQANCLLWYMD-NPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTP--FCF 89 (126)
T ss_dssp CCEECCEEEECTTC--SSCEEEEEEEEETTTTEEEEESS-CTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCS--SEE
T ss_pred CceEEEEEEeCCCC--CCCccceEEEEecCCCCEEEEEC-CCCCCCCCceeeEEEECCCccEEecCCcccCCCCC--EEE
Confidence 35899999988543 334599999999 77776666 554322 47899999999888998654 1222333 445
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.|. ...+..-|.|.|.+|...||+||..|+
T Consensus 90 ~i~---t~~r~y~l~A~s~~e~~~Wi~al~~a~ 119 (126)
T 1v5p_A 90 VIN---ALSQRYFLQANDQKDLKDWVEALNQAS 119 (126)
T ss_dssp EEE---CSSCEEEEECSSHHHHHHHHHHHHHTT
T ss_pred EEE---CCCEEEEEECCCHHHHHHHHHHHHHHH
Confidence 553 346779999999999999999999996
No 52
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=98.66 E-value=3.4e-08 Score=95.34 Aligned_cols=105 Identities=7% Similarity=0.026 Sum_probs=70.3
Q ss_pred CcceeeeEEEEEcccc--cccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccce--eeeCceEEE
Q 004828 44 GYFEYFGWVYHMGTNS--IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRR--RFNHGDVYV 119 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~--~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~--~~~~~~~yv 119 (728)
..+.+||||+.=|.++ ++..--++|||||.+..|.|||.+.... .|.-+..+...+.|+...-. ...-..-|.
T Consensus 13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~---~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~ 89 (164)
T 2lul_A 13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKK---YRKGFIDVSKIKCVEIVKNDDGVIPCQNKYP 89 (164)
T ss_dssp SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSC---CCCCEEEGGGCCEEEECCCCSSSCCSSSCSE
T ss_pred CCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCccc---ccccEEEEeeeEEEEeccccccCccccccee
Confidence 4567999999987654 4444448999999999999999654322 22223333444445432221 111223456
Q ss_pred EEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 120 MRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 120 ~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
|.|... ++.+-|.|.|.+|+..|++||++++.
T Consensus 90 f~i~t~---~rt~~l~A~s~~e~~~Wi~aL~~~i~ 121 (164)
T 2lul_A 90 FQVVHD---ANTLYIFAPSPQSRDLWVKKLKEEIK 121 (164)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEecC---CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 666543 46788999999999999999999983
No 53
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.66 E-value=1.1e-07 Score=86.36 Aligned_cols=101 Identities=15% Similarity=0.310 Sum_probs=68.9
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEe--CceeeeeccCCCCCCCCCcceeeeecCcee--Eeec----cceeeeC
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIR--GKYVEMYKRDPHENPGIKPIRRGVIGPTLM--VEEL----GRRRFNH 114 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~--~~~~~~yK~~p~~~~~~~pir~~~i~~~~r--v~d~----Gr~~~~~ 114 (728)
...+.++|||+.-|.. ...| ++|||||. +..|.|||.+.. ...|.....+..+.. |++. +++..+
T Consensus 15 ~~~~~~~G~L~K~g~~--~~~W-k~R~fvL~~d~~~L~yy~~~~~---~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~- 87 (129)
T 1x1g_A 15 SGTVVKQGYLAKQGHK--RKNW-KVRRFVLRKDPAFLHYYDPSKE---ENRPVGGFSLRGSLVSALEDNGVPTGVKGNV- 87 (129)
T ss_dssp CSEEEEEEEEEEECSS--SSSE-EEEEEEEEESSCEEEEECSSSC---CSSCSCCEESTTCCCEECCSSSSCSSCSSCC-
T ss_pred CCCEEEEEEEEEECCC--CCCe-eeEEEEEeCCCCeEEEeCCCCc---CCccceEEECcCCEEEEeCCCCCcccccCCC-
Confidence 3567799999997654 3444 99999999 579999996421 245666666665332 2333 222110
Q ss_pred ceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 115 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 115 ~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.-|.|.|.... .+.+.|.|.|.+|+..|+++|+.|+
T Consensus 88 -~~~~F~I~~~~--~r~~~l~a~s~~e~~~Wi~al~~~~ 123 (129)
T 1x1g_A 88 -QGNLFKVITKD--DTHYYIQASSKAERAEWIEAIKKLT 123 (129)
T ss_dssp -CSSCEEECCTT--CCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred -CCceEEEEcCC--CCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 23567776542 3458999999999999999999997
No 54
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=98.63 E-value=1.8e-07 Score=84.46 Aligned_cols=96 Identities=16% Similarity=0.169 Sum_probs=64.6
Q ss_pred eeeEEEEE-cccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCc-ee--EeeccceeeeCceEEEEEEE
Q 004828 48 YFGWVYHM-GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPT-LM--VEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 48 ~eGw~y~~-~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~-~r--v~d~Gr~~~~~~~~yv~~~y 123 (728)
+||||++= |..+.+..-=++|||||+++.|.|||.+-. ..|+.+.-+.+. |. +.. ...+.=++|.|.
T Consensus 2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~----~~p~~~i~l~~~~~~~~~~~-----~~~~r~~~F~l~ 72 (112)
T 3cxb_B 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTD----VIPLLSVNMGGEQCGGCRRA-----NTTDRPHAFQVI 72 (112)
T ss_dssp EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSC----CSCSEEEETTC-CEEEEEEC-----CCSSCTTEEEEE
T ss_pred ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCC----CCccceEEecCCEEEeeecc-----CCCCCCeEEEEE
Confidence 79999854 434444444499999999999999996532 345544444432 43 111 112223477776
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.+. .+..-|.|.|.||+..|+++|..|+.
T Consensus 73 ~~~--~~~y~f~A~s~ee~~~Wi~ai~~~~~ 101 (112)
T 3cxb_B 73 LSD--RPCLELSAESEAEMAEWMQHLCQAVS 101 (112)
T ss_dssp ETT--SCCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred cCC--CCEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 543 34678999999999999999999983
No 55
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=98.61 E-value=3.3e-07 Score=84.83 Aligned_cols=104 Identities=13% Similarity=0.216 Sum_probs=69.5
Q ss_pred CcceeeeEEEEE----cccccccccceeeeEEEeCceeeeeccCCCCC-------CCCCcceeeeecCceeEeeccceee
Q 004828 44 GYFEYFGWVYHM----GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN-------PGIKPIRRGVIGPTLMVEELGRRRF 112 (728)
Q Consensus 44 ~~~~~eGw~y~~----~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~-------~~~~pir~~~i~~~~rv~d~Gr~~~ 112 (728)
..+.++|||++- +-.++..++ ++|||||+|+.|.|||.+-... ....|.....+.++ .|+.- .+..
T Consensus 10 ~~~~k~G~L~kk~~~~~G~~~~k~W-k~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~-~v~~~-~~~~ 86 (129)
T 2p0d_A 10 HEVEKSGLLNMTKIAQGGRKLRKNW-GPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGA-ALAHG-RHLS 86 (129)
T ss_dssp CSEEEEEEEEEEEEEETTEECCCCC-EEEEEEEESSEEEEESCC--------------CCSEEEECTTC-EEEEC-TTSC
T ss_pred cceeEEEEEEEeeeccCCCcCCCCc-eEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCc-EEEEC-CCCC
Confidence 467799999984 234455666 8999999999999999763110 12456666666544 34421 1111
Q ss_pred eCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 113 NHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 113 ~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.. =++|+|... .....-|.|.|.+|+..|+++|+.||.
T Consensus 87 kr--~~~F~l~t~--~~~~yl~qA~s~~e~~~Wi~aI~~~i~ 124 (129)
T 2p0d_A 87 SR--RNVLHIRTI--PGHEFLLQSDHETELRAWHRALRTVIE 124 (129)
T ss_dssp SS--SSEEEEECT--TSCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CC--CcEEEEEcC--CCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 12 257777532 234577999999999999999999995
No 56
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=98.54 E-value=1.4e-07 Score=86.59 Aligned_cols=107 Identities=8% Similarity=0.119 Sum_probs=60.2
Q ss_pred cceeeeEEEEEcccccccccceeeeEEEeC-ceeeeeccCCC---C-CCCCCcceeeeec--------CceeEeec--cc
Q 004828 45 YFEYFGWVYHMGTNSIGHEYCHLRFLFIRG-KYVEMYKRDPH---E-NPGIKPIRRGVIG--------PTLMVEEL--GR 109 (728)
Q Consensus 45 ~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~-~~~~~yK~~p~---~-~~~~~pir~~~i~--------~~~rv~d~--Gr 109 (728)
.+.+||||+.-+.+.+...| ++|||||++ ..|.||+.+.. . ...++.+....+. .+|.+... |-
T Consensus 3 ~~~k~G~L~K~~g~~~~k~W-kkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~ 81 (128)
T 2rlo_A 3 IPIKQSFLLKRSGNSLNKEW-KKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGS 81 (128)
T ss_dssp CEEEEEEEEEECSCSTTCCE-EEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCC
T ss_pred cceeEEEEEEecCCCccCCc-cEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCcccccccccccccccc
Confidence 45699999997544455667 999999997 67777764110 0 0011111111110 01111100 00
Q ss_pred eeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 110 RRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 110 ~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.......=|.|.|... ..+...|.|.|.||...|++||+.||.
T Consensus 82 ~~~~~~~~~~F~I~t~--~~r~~~l~A~s~~e~~~Wi~ai~~~i~ 124 (128)
T 2rlo_A 82 AGQAEEENFEFLIVSS--TGQTWHFEAASFEERDAWVQAIESQIL 124 (128)
T ss_dssp CSSCCCCCCCEEEECT--TSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCceEEEEcC--CCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 0000011145666533 236788999999999999999999985
No 57
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=98.49 E-value=3.5e-07 Score=94.30 Aligned_cols=106 Identities=10% Similarity=0.121 Sum_probs=71.7
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCC-CCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG-IKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~-~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
..+.++||||.-|.++ ..| ++|||||+++.|.|||......|. .+|+-. +-+-.+-....+++......=|.|+|
T Consensus 166 ~~p~~~G~L~k~~~~~--k~W-kkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~-l~~~~v~~~~~~~~~~~~~~~~~F~i 241 (291)
T 3tca_A 166 IVPELEGALYLKEDGK--KSW-KRRYFLLRASGIYYVPKGKTKTSRDLACFIQ-FENVNIYYGIQCKMKYKAPTDHCFVL 241 (291)
T ss_dssp CCCCCEEEEEEECTTS--SCE-EEEEEEECSSEEEECCTTCCSSTTTCEEEEE-GGGCEEEEECSHHHHHCCSSSCEEEE
T ss_pred CCCceEEEEEEeCCCC--CCc-eEEEEEEeCCEEEEEecCccccccCceeecc-ceeEEEEecCccccccCCCCCeEEEE
Confidence 4567999999977653 455 999999999999999976655532 223211 11122222333444444444578888
Q ss_pred EeccC---cCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 123 YNRLD---ESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 123 yn~~~---~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
..... ..+..-|+|.|.+|...||.||+.|.
T Consensus 242 ~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak 275 (291)
T 3tca_A 242 KHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK 275 (291)
T ss_dssp ECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence 75432 23446799999999999999999986
No 58
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=98.48 E-value=6.6e-07 Score=85.89 Aligned_cols=101 Identities=11% Similarity=0.229 Sum_probs=73.4
Q ss_pred eeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCC---------C----C-----------------CCCc-----
Q 004828 48 YFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHE---------N----P-----------------GIKP----- 92 (728)
Q Consensus 48 ~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~---------~----~-----------------~~~p----- 92 (728)
.+||+|. ..++-..| ++|||||.+..|.|+|..-.+ . | ...|
T Consensus 3 k~G~L~~--~~~~~~~w-~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 3 KNGILYL--EDPVNHEW-YPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp EEEEEEE--EETTTTEE-EEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred cceEEEe--ecCCCCCc-eEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 5899999 56899999 999999999999998822110 0 0 0111
Q ss_pred ---------ceeeeecCceeEeeccceeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 93 ---------IRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 93 ---------ir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
.+..|.=.+|.|+..- .-.+..-|||+|-.......-+.|||.|-||+..||.||++|+
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~--~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa 147 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRP--EGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 147 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEET--TCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cccccccccccceEecCccEEEecc--CCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 0333444678887521 1122467999998775556679999999999999999999997
No 59
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=98.45 E-value=8.7e-07 Score=92.08 Aligned_cols=109 Identities=14% Similarity=0.236 Sum_probs=71.8
Q ss_pred CCCCcceeeeEEEEE------ccccc----ccccceeeeEEEeCceeeeeccCCCCC--CCCCcceeeeecCceeEeecc
Q 004828 41 KEKGYFEYFGWVYHM------GTNSI----GHEYCHLRFLFIRGKYVEMYKRDPHEN--PGIKPIRRGVIGPTLMVEELG 108 (728)
Q Consensus 41 ~~~~~~~~eGw~y~~------~~~~~----g~~~~~~Ryfvl~~~~~~~yK~~p~~~--~~~~pir~~~i~~~~rv~d~G 108 (728)
...+.+.++|||++- ...++ ...| ++|||||++..|.|||.+.... ....|.....+. +|.|+..-
T Consensus 6 ~~~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~W-krRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~-~~~v~~~~ 83 (263)
T 3a8p_A 6 KEQGVVRKAGWLFFKPLVTLQKERKLELVARRKW-KQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAE-DSIVQSVP 83 (263)
T ss_dssp ----CEEEEEEEEEEEEEEEEGGGEEEECTTCCC-EEEEEEEETTEEEEESSCCC------CCCSEEEECT-TCEEEECT
T ss_pred ccCCCeEEEEEeeecccccccCCCCccCccCCCc-eEEEEEEcCCEEEEEecCcccccccccCccceEEcC-CcEEEECC
Confidence 344677899999932 23333 3344 8999999999999999865321 135676666665 44454321
Q ss_pred ceeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 109 RRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 109 r~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
-.. . .=|+|.|... ..+...|.|.|.+|+..|++||+.|+...
T Consensus 84 ~~~--k-k~~~F~I~t~--~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~ 126 (263)
T 3a8p_A 84 EHP--K-KEHVFCLSNS--CGDVYLFQATSQTDLENWVTAIHSACASL 126 (263)
T ss_dssp TCS--S-CSSEEEEECT--TSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred cCC--C-CCCEEEEEcC--CCcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 111 1 1367888765 35668899999999999999999999744
No 60
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=98.44 E-value=4e-07 Score=98.00 Aligned_cols=98 Identities=13% Similarity=0.279 Sum_probs=70.6
Q ss_pred cceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEEe
Q 004828 45 YFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (728)
Q Consensus 45 ~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn 124 (728)
.+.++|||+.-|.+ -..| ++|||||++..|.|||.... ..|.....+.++ .|+... ..+.=|+|.|+.
T Consensus 212 ~~~k~G~L~K~g~~--~k~W-kkRwFVL~~~~L~Yyk~~~~----~~p~G~I~L~~~-~v~~~~----~~~~~~~F~I~~ 279 (347)
T 2r09_A 212 NPDREGWLLKLGGR--VKTW-KRRWFILTDNCLYYFEYTTD----KEPRGIIPLENL-SIREVE----DPRKPNCFELYN 279 (347)
T ss_dssp CCCEEEEEEEECSS--SCCE-EEEEEEEETTEEEEESSTTC----SSCSEEEECTTC-EEEEEC----CSSCSSEEEEEC
T ss_pred ccccCCeeEecCCC--cccc-eeEEEEEcCCEEEEEcCCCc----cCCcEEEEcCCe-EEEEcc----CCCCCCEEEEEe
Confidence 35799999998764 2445 99999999999999996543 345545555544 354321 112236788886
Q ss_pred ccC-------------------cCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 125 RLD-------------------ESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 125 ~~~-------------------~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
... ..+.+.|.|.|.||+..|+++|+.|+.
T Consensus 280 ~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~ 328 (347)
T 2r09_A 280 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 328 (347)
T ss_dssp SSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence 532 246778999999999999999999986
No 61
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=98.40 E-value=4.5e-07 Score=82.45 Aligned_cols=105 Identities=10% Similarity=0.095 Sum_probs=65.2
Q ss_pred CcceeeeEEEEEcc------cccccccceeeeEEEeCceeeeeccCCCCCC-CCCcce-eeeec-CceeEeeccceeeeC
Q 004828 44 GYFEYFGWVYHMGT------NSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIR-RGVIG-PTLMVEELGRRRFNH 114 (728)
Q Consensus 44 ~~~~~eGw~y~~~~------~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~-~~~pir-~~~i~-~~~rv~d~Gr~~~~~ 114 (728)
..+.+||||++=+. +...+++ ++|||||++..|.|||.+....+ ...|++ .+.|+ .+|.|+-- ... .
T Consensus 6 ~~v~k~G~L~rK~~~~~~gkk~~~~~W-k~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~-~d~--~ 81 (122)
T 1dro_A 6 AGEGHEGYVTRKHEWDSTTKKASNRSW-DKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIA-SDY--T 81 (122)
T ss_dssp SSSSEEEEEEEECSCCCCCCTTCCCCC-EEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEEC-CSS--S
T ss_pred CceEEEEEEEEEEEEeCCCccCCCCCc-cEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeC-CCC--C
Confidence 35669999998532 2233455 99999999999999997654332 122221 01222 12222210 011 1
Q ss_pred ceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 115 GDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 115 ~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
+.=++|+|-. ...+..-|.|.|.+|...|++||+.||+
T Consensus 82 kr~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~ 119 (122)
T 1dro_A 82 KKKHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSD 119 (122)
T ss_dssp SSTTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 1224666652 2356778999999999999999999984
No 62
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=98.38 E-value=2e-06 Score=78.99 Aligned_cols=105 Identities=12% Similarity=0.192 Sum_probs=66.2
Q ss_pred CCcceeeeEEEEE----cccccc-cccceeeeEEEeCceeeeeccCCCCCCC--------CCcceeeeec-CceeEeecc
Q 004828 43 KGYFEYFGWVYHM----GTNSIG-HEYCHLRFLFIRGKYVEMYKRDPHENPG--------IKPIRRGVIG-PTLMVEELG 108 (728)
Q Consensus 43 ~~~~~~eGw~y~~----~~~~~g-~~~~~~Ryfvl~~~~~~~yK~~p~~~~~--------~~pir~~~i~-~~~rv~d~G 108 (728)
++++..||||++= +-.|.+ +++ ++|||||+|..|.|||......++ ..|. ++|+ .+|.|+-.-
T Consensus 5 ~~~v~keG~L~rK~~~~~gkk~~~r~W-~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~--~~i~L~~a~v~~~~ 81 (124)
T 3pp2_A 5 TKTLDKAGVLHRTKTADKGKRLRKKHW-SASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPE--YTVELRGATLSWAP 81 (124)
T ss_dssp ----CEEEEEEEEEEEETTEECSSCCC-EEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEE--EEEECTTCEEEECC
T ss_pred CCcEEEEEEEEEEEeccCCccCCCCCc-eEEEEEEECCEEEEEecCccccccCccCcccccCCc--ceEEcCCCEEEecc
Confidence 3567799999985 122345 466 899999999999999965433211 1344 3444 446665321
Q ss_pred ceeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 109 RRRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 109 r~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.....++ +||+|-.. ..+...|.|.|.+|+..|+.+|..||+
T Consensus 82 ~d~~krk--~vF~l~t~--~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 82 KDKSSRK--NVLELRSR--DGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp GGGCSSS--SEEEEECT--TSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred cccCCCc--eEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 1111122 46666532 245678999999999999999999984
No 63
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=98.37 E-value=1.7e-06 Score=80.95 Aligned_cols=100 Identities=14% Similarity=0.117 Sum_probs=73.4
Q ss_pred eeeeEEEEE-----cccccccccceeeeEEEeCceeeeeccCCCCC---C--CCCcceeeeecCceeEeeccceeeeCce
Q 004828 47 EYFGWVYHM-----GTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN---P--GIKPIRRGVIGPTLMVEELGRRRFNHGD 116 (728)
Q Consensus 47 ~~eGw~y~~-----~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~---~--~~~pir~~~i~~~~rv~d~Gr~~~~~~~ 116 (728)
.|+|.|++- |...+-+++ +.|||||.|+.|-||+.+.... + ...|.+...| .+++|+. .-+.+.
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksW-kr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L-~g~~V~~----~e~~~~ 75 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSW-TRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSI-VGWMVQL----PDDPEH 75 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCC-EEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEEC-TTCEEEC----CCCTTS
T ss_pred ceeeeeeeeehhhcCCcccccCc-ccEEEEEeCCEEEEEcccccccccccccccCCCceEEe-CCCEEEe----cCCCCC
Confidence 589999976 555444555 8999999999999999663111 0 2467766666 5566651 223334
Q ss_pred EEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 117 VYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 117 ~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
=++|.|+|... .+...|.|.|.+++..|+.||..|+
T Consensus 76 ~~~F~L~~~~~-G~~Y~fqA~s~~~~~~W~~ai~~a~ 111 (126)
T 2dtc_A 76 PDIFQLNNPDK-GNVYKFQTGSRFHAILWHKHLDDAC 111 (126)
T ss_dssp TTEEEEECTTS-CSEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeCCC-CCEEEEeCCCHHHHHHHHHHHHHHH
Confidence 57899997633 5679999999999999999999998
No 64
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=98.34 E-value=1.6e-06 Score=94.73 Aligned_cols=99 Identities=13% Similarity=0.247 Sum_probs=70.6
Q ss_pred CcceeeeEEEEEcccc-cccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEee-ccceeeeCceEEEEE
Q 004828 44 GYFEYFGWVYHMGTNS-IGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEE-LGRRRFNHGDVYVMR 121 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~-~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d-~Gr~~~~~~~~yv~~ 121 (728)
+.+.++||||.-..+. .+..| ++|||||++..|.|||+.....+...+|+...| +..+ ..|+ |.|.
T Consensus 299 ~~~~k~G~L~k~~~~g~~~~~W-~rrwfvl~~~~l~y~~~~~~~~~~~~~l~~~~v----~~~~~~~r~-------~cF~ 366 (407)
T 4h8s_A 299 NLIQKAGYLNLRNKTGLVTTTW-ERLYFFTQGGNLMCQPRGAVAGGLIQDLDNCSV----MAVDCEDRR-------YCFQ 366 (407)
T ss_dssp SCSCCEEEEEEEEECSSSCEEE-EEEEEEECSSCEECCCTTCSSCCCCBCSSCCEE----EEECCTTCS-------SEEE
T ss_pred CcceeeceeeeeccCCCCCCCc-eEEEEEEECCEEEEEeCCCCCCCeEEECCceEE----EECCCCCCC-------ceEE
Confidence 4567999999865543 34566 999999999999999977655545555543222 2222 2222 6788
Q ss_pred EEeccCcCcceeeeccCHHHHHHHHHHHHHHHHH
Q 004828 122 LYNRLDESKKGEIACATAGEARKWMEAFDQAKQQ 155 (728)
Q Consensus 122 ~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 155 (728)
|..+. ..+.+.|.|.|.+|...||+||+.|+++
T Consensus 367 i~~~~-~~~~~~l~A~s~~e~~~Wi~ai~~a~~~ 399 (407)
T 4h8s_A 367 ITTPN-GKSGIILQAESRKENEEWICAINNISRQ 399 (407)
T ss_dssp EECTT-SSCCEEEECSSSHHHHHHHHHHHHHHSC
T ss_pred EEecC-CCceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 87542 2345899999999999999999999853
No 65
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=98.30 E-value=5.7e-07 Score=93.56 Aligned_cols=97 Identities=19% Similarity=0.323 Sum_probs=71.7
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCc-------eeeeeccCCCCCCC-CCcceeeeecCceeEeeccceeeeCc
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK-------YVEMYKRDPHENPG-IKPIRRGVIGPTLMVEELGRRRFNHG 115 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~-------~~~~yK~~p~~~~~-~~pir~~~i~~~~rv~d~Gr~~~~~~ 115 (728)
+.+.++|||+.- ..| ++|||||++. .|.|||.+...... ..|.....+..++.|+... ..+
T Consensus 8 ~~v~k~G~L~K~------K~W-kkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~----~~~ 76 (264)
T 1qqg_A 8 SDVRKVGYLRKP------KSM-HKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRA----DSK 76 (264)
T ss_dssp -CEEEEEEEECT------TTC-CEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEEC----CSS
T ss_pred CCccEEEEEEEC------CCC-EeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEecc----CCC
Confidence 456799999874 455 9999999999 99999966531101 3577777777777775332 122
Q ss_pred eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 116 DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 116 ~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.=|.|.|+.. .+...|.|.|.+|+..|+++|+.++.
T Consensus 77 ~~~~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~ 112 (264)
T 1qqg_A 77 NKHLVALYTR---DEHFAIAADSEAEQDSWYQALLQLHN 112 (264)
T ss_dssp CSSEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC-
T ss_pred CCcEEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 3367888754 67889999999999999999999974
No 66
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=98.28 E-value=2.5e-06 Score=93.22 Aligned_cols=103 Identities=16% Similarity=0.181 Sum_probs=70.2
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCcee---EeeccceeeeC-ceEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLM---VEELGRRRFNH-GDVY 118 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~r---v~d~Gr~~~~~-~~~y 118 (728)
...+.++|||+.-|.. +...| ++|||||.+..|.|||..... .|.....+...+- |.+.--....+ +-=|
T Consensus 266 ~~~~~k~G~L~K~g~~-~~k~W-KkRwFVL~~~~L~YYk~~~d~----~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 339 (386)
T 3lju_X 266 SRNYLKEGYMEKTGPK-QTEGF-RKRWFTMDDRRLMYFKDPLDA----FARGEVFIGSKESGYTVLHGFPPSTQGHHWPH 339 (386)
T ss_dssp SCCCSEEEEEEECCTT-SCSCC-EEEEEEEETTEEEEESSTTCS----BCSEEEECCCGGGTCEEEESCCTTCCSCCSCE
T ss_pred ccccceeeeEEEECCC-CCCCC-cccEEEEECCEEEEEecCCCc----ccceEEEeecceeeeeecccCCccccccCCCc
Confidence 3456699999997654 22455 999999999999999975433 3444444444332 22211111111 1137
Q ss_pred EEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 119 VMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 119 v~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.|.|..+ .+...|.|.|.+|+..|+.||+.|++
T Consensus 340 ~F~I~t~---~rty~l~A~s~~e~~~Wi~aL~~~i~ 372 (386)
T 3lju_X 340 GITIVTP---DRKFLFACETESDQREWVAAFQKAVD 372 (386)
T ss_dssp EEEEECS---SCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 8888754 57889999999999999999999985
No 67
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=98.16 E-value=3.2e-06 Score=91.58 Aligned_cols=99 Identities=10% Similarity=0.159 Sum_probs=64.5
Q ss_pred CcceeeeEEEEEccccccc-ccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGH-EYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~-~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
+.+.++||||.-|.+.+.+ .| ++|||||+++.|.|||. +. ..|.....+..| .|...- ...-=|+|.|
T Consensus 276 ~~~~k~G~L~K~~~~~~~~~~W-kkRwfvL~~~~L~y~k~-~~----~~~~~~i~l~~~-~v~~~~----~~~r~~~F~i 344 (385)
T 2q13_A 276 NLTRKAGYLNARNKTGLVSSTW-DRQFYFTQGGNLMSQAR-GD----VAGGLAMDIDNC-SVMAVD----CEDRRYCFQI 344 (385)
T ss_dssp CCSCCEEEEEEC--------CC-EEEEEEEETTEEEEECS-SC----SSCEEEEECTTC-EEEEEC----CTTCSSEEEE
T ss_pred CCccEEEEEEEecCCCCCcCCc-eeEEEEEECCEEEEecC-CC----cCCCceEEccce-EEEecc----ccCCCceEEE
Confidence 4667999999987665333 56 99999999999999997 32 234433333343 332110 0111267888
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
..... .+...|.|.|.+|...||+||+.|++
T Consensus 345 ~t~~~-~~~~~l~A~s~~e~~~Wi~ai~~~~~ 375 (385)
T 2q13_A 345 TSFDG-KKSSILQAESKKDHEEWICTINNISK 375 (385)
T ss_dssp ECTTS-CBCCCEECSSHHHHHHHHHHHHHHHT
T ss_pred EeCCC-CeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 75432 26789999999999999999999984
No 68
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=98.03 E-value=1.3e-05 Score=87.33 Aligned_cols=101 Identities=14% Similarity=0.202 Sum_probs=64.4
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEe-CceeeeeccCCCCCC-CCCcceeeeecCceeEeeccceeeeCceEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIR-GKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~-~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~ 121 (728)
.++..||||.+-|.. + .. -++|||||. +..+.|||.+|...+ +.+||...-+-.|..+...+.+ ... |.
T Consensus 4 ~~v~keG~L~K~g~~-~-k~-Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~---~~~---f~ 74 (446)
T 4ejn_A 4 VAIVKEGWLHKRGEY-I-KT-WRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPR---PNT---FI 74 (446)
T ss_dssp CCEEEEEEEEEEETT-T-TE-EEEEEEEEETTSBEEEESSCC-------CCCGGGBCTTCEEEEECSSS---TTE---EE
T ss_pred ceEEEEeeEEeeccc-c-cc-ccceEEEEeeCCEEEEEecCCCCCccCcccccCccccceeecCCCCCC---Cce---eE
Confidence 357799999997532 2 24 499999997 789999999997765 6788877666544443332211 112 33
Q ss_pred EEeccCcCcce--eeeccCHHHHHHHHHHHHHHHH
Q 004828 122 LYNRLDESKKG--EIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 122 ~yn~~~~~~~~--~~~a~~~eea~~W~~a~~~a~~ 154 (728)
|..... ...+ ++.+.++||...|+.||+.|++
T Consensus 75 I~~~~~-~~~~~r~~~~~~~ee~e~W~~ai~~~i~ 108 (446)
T 4ejn_A 75 IRCLQW-TTVIERTFHVETPEEREEWTTAIQTVAD 108 (446)
T ss_dssp EEEEET-TEEEEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred EEcCCC-ceeeeeEEecCCHHHHHHHHHHHHhhhh
Confidence 332211 1111 5788999999999999999975
No 69
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.00 E-value=2e-05 Score=74.46 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=81.4
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
+.++.++|+=..+..++..--.+.|||||+++.|.|||++.... ..||=.+.+.+ |+|+.. .++ -+--|.|++-
T Consensus 7 ~~pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~ePig~I~L~g-ceV~pd--~~~-~~~kf~ikl~ 80 (137)
T 2ys3_A 7 GIPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--GDPIQQLNLKG-CEVVPD--VNV-SGQKFCIKLL 80 (137)
T ss_dssp SCCCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--SCCSCCBCTTT-CEEEEC--CBG-GGTBEEEEEE
T ss_pred CCcchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc--CCCceEEECCC-CEEecc--ccc-cCCceEEEEE
Confidence 45779999999999999988779999999999999999888654 46776666655 556644 222 3345667777
Q ss_pred ecc-CcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 124 NRL-DESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 124 n~~-~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
-+. +..+.+-|.|.|.|+-++||.|+..|.
T Consensus 81 iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAs 111 (137)
T 2ys3_A 81 VPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111 (137)
T ss_dssp EECSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCCCCceEEEEECCCHHHHHHHHHHHHHhc
Confidence 664 345779999999999999999999985
No 70
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=98.00 E-value=6.5e-06 Score=75.54 Aligned_cols=106 Identities=12% Similarity=0.207 Sum_probs=70.4
Q ss_pred eeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccce-eee---CceEEEEEE
Q 004828 47 EYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRR-RFN---HGDVYVMRL 122 (728)
Q Consensus 47 ~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~-~~~---~~~~yv~~~ 122 (728)
.|||||-.=....+....=++|||||.+..|.|||.++... ...|....-++....|+-..-. .+| ...=++|.|
T Consensus 2 ~~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I 80 (117)
T 2rov_A 2 RLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQI 80 (117)
T ss_dssp CSEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHH-TTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEE
T ss_pred ceEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcc-cCCceEEEECcccEEEEEcccccccccccccCCcEEEE
Confidence 58999986333334442349999999999999999865431 2466666666666565433221 111 112267777
Q ss_pred -Eecc--CcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 123 -YNRL--DESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 123 -yn~~--~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
|... ...+.+-|-|.|.||-.+|+.+|+.+|
T Consensus 81 ~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i 114 (117)
T 2rov_A 81 LYANEGISSAKNLLLLANSTEEQQKWVSRLVKKI 114 (117)
T ss_dssp EECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 4321 224679999999999999999999887
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.83 E-value=2.1e-05 Score=85.83 Aligned_cols=98 Identities=12% Similarity=0.110 Sum_probs=67.3
Q ss_pred ceeeeEEEEEcccccccccceeeeEEE--eCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFI--RGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl--~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
..+||||+.-|.. ..+| ++||||| +++.|.|||.+. +..|.....+.....+.+- ...| .-+.|.|.
T Consensus 146 ~~keG~L~KrG~~--~k~W-krRwFVL~~~~~~L~Yy~~~~----~~~p~g~I~L~~~~~~~~~---~~~~-~~~~f~I~ 214 (386)
T 3lju_X 146 GYREGFLWKRGRD--NGQF-LSRKFVLTEREGALKYFNRND----AKEPKAVMKIEHLNATFQP---AKIG-HPHGLQVT 214 (386)
T ss_dssp SEEEEEEEEECSS--SCCE-EEEEEEEETTTTEEEEEC---------CCSEEEEGGGEEEEECH---HHHT-STTCEEEE
T ss_pred cccccceeeeccc--cCCc-eEEEEEEEcCCCEEEEECCCC----ccCcccEEEeeccEEEEcc---cccC-CCceEEEE
Confidence 4599999998765 4567 8899999 999999999764 2567667777665444421 0001 12344442
Q ss_pred -eccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 124 -NRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 124 -n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
-.....+.+-|.|.|.+|+..|+++|+.|..
T Consensus 215 ~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~~ 246 (386)
T 3lju_X 215 YLKDNSTRNIFIYHEDGKEIVDWFNALRAARF 246 (386)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEEEcCCHHHHHHHHHhhhhccc
Confidence 3345567889999999999999999998863
No 72
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.66 E-value=0.00031 Score=65.50 Aligned_cols=105 Identities=14% Similarity=0.119 Sum_probs=82.1
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCc------eeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGK------YVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDV 117 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~------~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~ 117 (728)
+.+.++||+|.-..-++|.-+ |+|||||-.. .|++|..+-..+.+..|=|-+-...|++|+.-+-++--=+.-
T Consensus 10 e~~vk~G~L~~q~q~~fgkKW-rk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~ 88 (127)
T 2d9w_A 10 DGAVKQGFLYLQQQQTFGKKW-RRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDT 88 (127)
T ss_dssp CCSSEEEEEEECBCSSSSCBC-CEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSC
T ss_pred CccccceEEEecccchhhhhh-heeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCcc
Confidence 456799999996666999986 9999999864 688898654444356777888899999999877662222344
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 118 yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
++|+|+-+ ++-.-|||.+ +|...||.+|.+.+
T Consensus 89 ~aF~l~T~---er~~~laAe~-~E~~~Wi~~ic~~a 120 (127)
T 2d9w_A 89 SAFFLETK---ERLYLLAAPA-AERGDWVQAICLLA 120 (127)
T ss_dssp EEEEEEES---SCEEEEEECH-HHHHHHHHHHHHHH
T ss_pred eEEEEEeC---CcEEEEEeCc-HHHHHHHHHHHHHh
Confidence 99999854 5788999996 58999999998876
No 73
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=97.55 E-value=0.00022 Score=74.02 Aligned_cols=107 Identities=10% Similarity=0.071 Sum_probs=69.8
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeE--eeccceeeeCceEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMV--EELGRRRFNHGDVYVM 120 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv--~d~Gr~~~~~~~~yv~ 120 (728)
.+.++.+||||.-+..+ ..| ++|||||++..|.|||+. .+.+ ..-|..++-=.++-| --.+++.+.--.=|.|
T Consensus 129 s~~P~~~G~L~~ke~~~--K~W-kkRyfvLr~sgLy~~~k~-~sk~-~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F 203 (256)
T 3hk0_A 129 SSSPEIQGFLHVKELGK--KSW-KKLYVCLRRSGLYCSTKG-TSAA-PRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGL 203 (256)
T ss_dssp TSCEEEEEEEEEECTTS--SCE-EEEEEEEETTEEEEESST-TCCC-GGGEEEEECCTTEEEEEESSTHHHHCCSSSEEE
T ss_pred CCCCcceeEEEEecCCC--Ccc-eEEEEEEeCCEEEEEecC-CCCc-cccceEEEEcCCCEEEEecccccccCCCCCCEE
Confidence 35678999999876543 466 999999999999777744 3331 111222222222222 2234554444456788
Q ss_pred EEEeccC---cCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLD---ESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 121 ~~yn~~~---~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
+|...+. ....--|.|.+.++...|+.||+.|+-
T Consensus 204 ~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 204 CIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp EEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 8875443 223468999999999999999999974
No 74
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=97.45 E-value=0.0003 Score=73.95 Aligned_cols=106 Identities=11% Similarity=0.137 Sum_probs=68.5
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEe--eccceeeeCceEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVE--ELGRRRFNHGDVYVMR 121 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~--d~Gr~~~~~~~~yv~~ 121 (728)
+.++.+||||.-+..+ ..| ++|||||+++.|.||++.-... ..-+-.++.=.+|-|. ..+++.+.--.=|.|+
T Consensus 156 ~~pe~~G~L~~k~~~~--k~W-kkRyfvLr~sgLyy~~K~~sk~--~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ 230 (281)
T 4gmv_A 156 TVPEIEGVLWLKDDGK--KSW-KKRYFLLRASGIYYVPKGKAKV--SRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLV 230 (281)
T ss_dssp CCCCCEEEEEEECTTS--SCE-EEEEEEECSSCEEEC-----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEE
T ss_pred CCCccEEEEEEECCCC--CCC-eEEEEEEeCCEEEEEeCCCCCc--cccceEEEEcCCcEEEEecccccccCCCCCcEEE
Confidence 4567999999876544 366 9999999999998888653322 1112222223333333 2345555555678999
Q ss_pred EEeccC---cCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 122 LYNRLD---ESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 122 ~yn~~~---~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
|..... ....--|.|.|.++...|+.||.-|+-
T Consensus 231 ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 231 LKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp EECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 987542 233458999999999999999999874
No 75
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.34 E-value=0.001 Score=62.12 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=64.0
Q ss_pred CCCCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCC-CCCcceeeeecCceeEee--------cccee
Q 004828 41 KEKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENP-GIKPIRRGVIGPTLMVEE--------LGRRR 111 (728)
Q Consensus 41 ~~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~-~~~pir~~~i~~~~rv~d--------~Gr~~ 111 (728)
+..+.+..||||+|+...-- -.+.+|++|++|.+.||+.+=...+ .++|+.-.+-=..+..-+ +=-|+
T Consensus 3 ~~~s~vlkeGWmVH~t~~d~---~rKRHYWrLD~K~Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi 79 (129)
T 2d9z_A 3 SGSSGMVKEGWMVHYTSRDN---LRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEI 79 (129)
T ss_dssp SCCTTSEEEEEEEEEESSCC---CCEEEEEEEESSCEEEESCSSCCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEE
T ss_pred CCCCceeecceEEEEccCCc---cccceeeEecCCeEEEEecCCCCceeceeeHHHhcccccccCccccCCCCCCceEEE
Confidence 45577889999999976553 3688999999999999997633322 345555332111111110 11355
Q ss_pred eeCceEEEEEEEeccCcCcc-e-eeeccCHHHHHHHHHHHHHHH
Q 004828 112 FNHGDVYVMRLYNRLDESKK-G-EIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 112 ~~~~~~yv~~~yn~~~~~~~-~-~~~a~~~eea~~W~~a~~~a~ 153 (728)
.-..++|...= |....... . --....++.|..|..||++|+
T Consensus 80 ~T~~~~y~Vge-~~~~~~~~~~~~~sg~g~~~a~~We~aIrqAL 122 (129)
T 2d9z_A 80 ITDTMVYFVGE-NNGDSSHNPVLAATGVGLDVAQSWEKAIRQAL 122 (129)
T ss_dssp ECSSCEEEECB-CCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHH
T ss_pred EECCEEEEEcc-CCCCCCCCccccccccchHHHHHHHHHHHHhc
Confidence 56666665321 11110000 0 011223799999999999997
No 76
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.28 E-value=0.0017 Score=60.45 Aligned_cols=102 Identities=16% Similarity=0.161 Sum_probs=62.8
Q ss_pred CCCCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeecc------------
Q 004828 41 KEKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELG------------ 108 (728)
Q Consensus 41 ~~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~G------------ 108 (728)
+..+.+-.||||+|++..---+ +.||++|++|.+.||+.+= +..|.|.+....=+.|+.--
T Consensus 3 ~~~s~vlkeGW~VH~t~~d~~r---KRHYWrLD~K~Itlf~~e~----~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~h 75 (125)
T 2coa_A 3 SGSSGTLREGWVVHYSNKDTLR---KRHYWRLDCKCITLFQNNT----TNRYYKEIPLSEILTVESAQNFSLVPPGTNPH 75 (125)
T ss_dssp CCCCSCSEEEEEEECCSSSCCC---EEEEEEECSSEEEEESSSS----CSSCSEEEETTTCCEEEESCCCSSSCTTSCCE
T ss_pred CCCCceeecceEEEEccCCccc---cceeeEecCCeEEEEecCC----CCceeeeeehhHeecccccccccccCCCCCCc
Confidence 3457788999999998765544 7999999999999999763 24455555555444444421
Q ss_pred -ceeeeCceEEEEEEEeccC-cCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 109 -RRRFNHGDVYVMRLYNRLD-ESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 109 -r~~~~~~~~yv~~~yn~~~-~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
-|+.-..+.|...= |... ..++= |.. .+.|..|..||++|+
T Consensus 76 cFEi~T~~~~yyVg~-~~~~~p~~~s--g~g-~~~a~~W~~aIrqAL 118 (125)
T 2coa_A 76 CFEIVTANATYFVGE-MPGGTPGGPS--GQG-AEAARGWETAIRQAL 118 (125)
T ss_dssp EEEEECSSCCCCEEC-CSCCCSSSCC--CCC-SHHHHHHHHHHHHHG
T ss_pred eEEEEeCCeEEEEcc-CCCCCCCCcC--ccc-cHHHHHHHHHHHhhc
Confidence 23333443333220 1000 00111 222 489999999999996
No 77
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=97.26 E-value=0.00034 Score=73.44 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=65.5
Q ss_pred CCCCcceeeeEEEEE-----ccc-cc---ccccceeeeEEEeCceeeeeccCCCCCCC--CCcceeeeecCceeEeeccc
Q 004828 41 KEKGYFEYFGWVYHM-----GTN-SI---GHEYCHLRFLFIRGKYVEMYKRDPHENPG--IKPIRRGVIGPTLMVEELGR 109 (728)
Q Consensus 41 ~~~~~~~~eGw~y~~-----~~~-~~---g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~--~~pir~~~i~~~~rv~d~Gr 109 (728)
+..+.+.++|||++= +.+ |. +...=++|||||+|..|.|||.+-..... ..|.....|.+++-....
T Consensus 6 ~~~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~-- 83 (279)
T 3a8n_A 6 AAQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVP-- 83 (279)
T ss_dssp ----CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCT--
T ss_pred ccCCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEecc--
Confidence 344677899999862 222 22 44445999999999999999976532111 133333444333322111
Q ss_pred eeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 110 RRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 110 ~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.+.+-=+||+|-+. ..+..-|.|.|.+|+..|+.+|..|+.
T Consensus 84 --d~~kKk~vF~L~t~--~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 84 --EHPKKDFVFCLSNS--LGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp --TSSSSCSCCCEEET--TTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred --ccCCCCcEEEEEcC--CCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 11111147777655 456688999999999999999999985
No 78
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=96.76 E-value=0.014 Score=56.86 Aligned_cols=105 Identities=10% Similarity=0.147 Sum_probs=78.9
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
...++..+|+=..+..|+.+.=.+.||||+++..|.|||.+=... ..|+-+..+-+|--+-|. .+.++ =|.+++
T Consensus 44 t~iPeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--geP~~~I~LrGCEVtpDV---nva~~-Kf~IkL 117 (173)
T 4f7h_A 44 TSIPELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GTPAHQMNLRGCEVTPDV---NISGQ-KFNIKL 117 (173)
T ss_dssp GGTTCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SCCSEEEECTTCEEEEEE---ETTTT-EEEEEE
T ss_pred hcChhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhc--CCCceEEecCceEEeccc---ccccc-ceeEEE
Confidence 356678899988899999999999999999999999999877665 678777766665544331 11111 144555
Q ss_pred EeccC-cCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 123 YNRLD-ESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 123 yn~~~-~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
..+.. ..+-+-|.|.|.++=++||.|.+.|.
T Consensus 118 ~vP~~~gm~e~~Lrcd~E~qya~WMAAcrLAs 149 (173)
T 4f7h_A 118 LIPVAEGMNEIWLRCDNEKQYAHWMAACRLAS 149 (173)
T ss_dssp EEEETTEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred eccCCCCcceeeeecCCHHHHHHHHHHhhhhc
Confidence 54533 45567799999999999999999996
No 79
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=96.64 E-value=0.024 Score=54.75 Aligned_cols=105 Identities=12% Similarity=0.225 Sum_probs=73.5
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
...++..+|+=..+..|+.+.=.+.||||+++..|.|||.+=... ..|+-+.-+-+|--+-|. ..-+-=|.+++
T Consensus 23 t~iPeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--geP~~~inLrGCEVtPDV----nva~~Kf~ikL 96 (165)
T 4bbk_A 23 TDIPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GEPIEKLNLRGCEIVPDV----NVSGRKFGIKL 96 (165)
T ss_dssp ---CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT--SCCSEEEECTTCEEEEEE----ETTTTEEEEEE
T ss_pred ccChhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc--CCCceEEecCccEEeccc----ccccceeeEEE
Confidence 456778999988899999999999999999999999999877666 789988888875444331 11122256777
Q ss_pred EeccC-cCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 123 YNRLD-ESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 123 yn~~~-~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
..+.. -..-+-|.|.|.++=++||-|.+.|.
T Consensus 97 ~ip~~~gm~e~~LrcdsE~QYa~WMAAcrLAs 128 (165)
T 4bbk_A 97 LIPVADGMNEVYLRCDHEDQYARWMAACILAS 128 (165)
T ss_dssp EEEETTEEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ecCCCCcceeeeeecCCHHHHHHHHHHhhhcc
Confidence 66654 34466799999999999999999996
No 80
>3tl1_A WHIE ORF VI, polyketide cyclase; helix-GRIP fold, polyketide C9-C14 aromatase/cyclase, linear beta-ketone intermediate; HET: JRO; 1.80A {Streptomyces coelicolor} PDB: 3tvr_A 2kf2_A
Probab=96.63 E-value=0.049 Score=52.02 Aligned_cols=142 Identities=12% Similarity=0.027 Sum_probs=88.9
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeE
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsY 341 (728)
....+|++||++||++|.|... -++|-+.+..+++++. +++...+...+.... ++ ..+.|+..+.+ +.++ -
T Consensus 6 ~~si~I~a~~~~V~~lV~Dve~--yP~~~p~~~~~~vl~~-~~~~~~~rl~~~~~~--~G-~~~~~ts~~~~--d~~~-~ 76 (159)
T 3tl1_A 6 DNEITIAAPMELVWNMTNDIEK--WPGLFSEYASVEVLGR-DDDKVTFRLTMHPDA--DG-KVWSWVSERVA--DPVT-R 76 (159)
T ss_dssp EEEEEESSCHHHHHHHHTCGGG--HHHHCSSEEEEEEEEE-CSSEEEEEEEECCCT--TS-CCCEEEEEEEE--ETTT-T
T ss_pred EEEEEecCCHHHHHHHHHhHHH--hhhhhhCceEEEEEec-CCCEEEEEEEEEecc--Cc-eEEEEEEEEEE--cCCC-C
Confidence 3456899999999999999875 7799999999999988 455555554311221 12 24567665544 2222 1
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHHH
Q 004828 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQV 421 (728)
Q Consensus 342 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~V 421 (728)
.|..+.+.- . | ++ .+-+.|.++|++. .|+|++......++-. |.-...+.+.+-..+-..+
T Consensus 77 ~I~~~~~~~-g-P-----f~--~l~g~W~f~p~~~-------gt~V~~~~df~~~~~~---p~~~~~~~~~~~~~~~~~L 137 (159)
T 3tl1_A 77 TVRAQRVET-G-P-----FQ--YMNIVWEYAETAE-------GTVMRWTQDFAMKPDA---PVDDAWMTDNINRNSRTQM 137 (159)
T ss_dssp EEEEEESSC-T-T-----EE--EEEEEEEEEEETT-------EEEEEEEEEEEECTTC---SSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEccC-C-C-----hh--hccCEEEEEECCC-------CEEEEEEEEEEecCCC---CCCHHHHHHHHHhhHHHHH
Confidence 233343321 1 2 22 3457899999863 4999999999888766 3211112333444444567
Q ss_pred HHHHHHhhcC
Q 004828 422 AGLKEYIGAN 431 (728)
Q Consensus 422 a~LRe~~~~~ 431 (728)
++||+.+++.
T Consensus 138 ~~lK~~~E~~ 147 (159)
T 3tl1_A 138 ALIRDRIEQA 147 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 8888777653
No 81
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=96.47 E-value=0.045 Score=50.43 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=77.2
Q ss_pred EEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecC---ceEEEEEEeccCcCCCCCCCCeEEEEEEEEEc
Q 004828 260 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDG---HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRG 336 (728)
Q Consensus 260 ~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe---~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~ 336 (728)
.+.....|++||++||+++.|.+. .++|-+.+.+.++++.-++ +......... + +.+ .+.|..-..+ .
T Consensus 3 ~~~~s~~i~ap~~~v~~~v~D~~~--~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~~~--~--~~~-~~~~~~~v~~--~ 73 (148)
T 1t17_A 3 RHVVTKVLPYTPDQLFELVGDVDA--YPKFVPWITGMRTWNGRVDGAVSTVDAEAQVG--F--SFL-REKFATRVRR--D 73 (148)
T ss_dssp EEEEEEEESSCTHHHHHHHTTTTC--CSSCCSSCCCCCEEEEEEETTEEEEEEEEECS--T--TSS-CCEEEEEEEE--E
T ss_pred EEEEEEEecCCHHHHHHHHHHHhh--HHhhCCCcCeeEEEEecCCCCCceEEEEEEEE--e--cce-eEEEEEEEEE--c
Confidence 356677899999999999999976 8899999999999987652 2233333332 1 122 3446543332 2
Q ss_pred CCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 337 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 337 ~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
.+ .+.|..+++.- | -+. +-+.|.++|.++ + |+|++.+..+++|.+
T Consensus 74 ~~-~~~i~~~~~~G---~-f~~------~~g~w~f~~~~~------g-t~v~~~~~~~~~~~l 118 (148)
T 1t17_A 74 KD-ARSIDVSLLYG---P-FKR------LNNGWRFMPEGD------A-TRVEFVIEFAFKSAL 118 (148)
T ss_dssp TT-TCEEEEEESST---T-SSC------EEEEEEEEEETT------E-EEEEEEEEECCSCHH
T ss_pred CC-CcEEEEEECCC---C-hhc------cEEEEEEEECCC------C-eEEEEEEEEEECcHH
Confidence 22 25677777652 2 111 357899999874 4 999999999999877
No 82
>3tvq_A Multifunctional cyclase-dehydratase-3-O-methyl TR TCMN; tetracenomycin, aromatase, taxifolin, dihyroquercet helix-GRIP fold; HET: DQH; 1.67A {Streptomyces glaucescens} PDB: 2rer_A 2res_A 2rez_A
Probab=96.42 E-value=0.047 Score=52.76 Aligned_cols=142 Identities=12% Similarity=0.043 Sum_probs=84.1
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeE
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTY 341 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsY 341 (728)
.....|++||++||++|.|... -++|.+.+..+++++.-+ +...+...+.... +. ..+.|...+.. +.++ -
T Consensus 6 ~~si~I~a~~~~v~~lv~Dv~~--~p~w~p~~~~~~~~~~~~-~~~~~~l~~~~~~--~G-~~~~~ts~~~~--d~~~-~ 76 (169)
T 3tvq_A 6 DNSIVVNAPFELVWDVTNDIEA--WPELFSEYAEAEILRQDG-DGFDFRLKTRPDA--NG-RVWEWVSHRVP--DKGS-R 76 (169)
T ss_dssp EEEEEESSCHHHHHHHHTCGGG--HHHHCTTEEEEEEEEEET-TEEEEEEEECCCT--TS-CCCEEEEEEEE--EGGG-T
T ss_pred EEEEEecCCHHHHHHHHHhhhH--HHHHHhheeEEEEEecCC-CEEEEEEEEEecC--CC-eEEEEEEEEEE--cCCC-c
Confidence 3456899999999999999865 789999999999998854 3222222111211 11 23456543332 2222 2
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHHH
Q 004828 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQV 421 (728)
Q Consensus 342 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~V 421 (728)
.|..+.+.-. | ++ .+-+.|.++|++. + |+|++....+.++-. |.-...+.+.+-..+-..+
T Consensus 77 ~I~~~~l~~g--P-----f~--~~~g~W~f~p~~~------g-t~V~~~~df~~~~~~---p~~~~~~~~av~~~~~~~L 137 (169)
T 3tvq_A 77 TVRAHRVETG--P-----FA--YMNLHWTYRAVAG------G-TEMRWVQEFDMKPGA---PFDNAHMTAHLNTTTRANM 137 (169)
T ss_dssp EEEEEESSCT--T-----EE--EEEEEEEEEEETT------E-EEEEEEEEEEECTTC---SSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCC--C-----hh--heeeEEEEEECCC------C-EEEEEEEEEEecCCC---cccHHHHHHHHHhhHHHHH
Confidence 2333333221 2 22 2456899999875 4 999999999887655 3211112233333334567
Q ss_pred HHHHHHhhcC
Q 004828 422 AGLKEYIGAN 431 (728)
Q Consensus 422 a~LRe~~~~~ 431 (728)
++||+.+++.
T Consensus 138 ~~LK~~aE~~ 147 (169)
T 3tvq_A 138 ERIKKIIEDR 147 (169)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhh
Confidence 7788777653
No 83
>2d4r_A Hypothetical protein TTHA0849; start domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.40A {Thermus thermophilus} SCOP: d.129.3.6
Probab=96.36 E-value=0.17 Score=44.68 Aligned_cols=139 Identities=15% Similarity=0.048 Sum_probs=77.4
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
+.....|++||++||++|.|... .++|.+.+..+++++.-++. ...+..+.. ++ .. ..|. .+.. ..+.+.
T Consensus 4 ~~~~~~i~ap~~~V~~~l~d~~~--~~~w~p~~~~~~~~~~~~~g-~~~~~~~~~---~g-~~-~~~~-~~~~-~~~~~~ 73 (147)
T 2d4r_A 4 VRAERYIPAPPERVYRLAKDLEG--LKPYLKEVESLEVVAREGAR-TRSRWVAVA---MG-KK-VRWL-EEEE-WDDENL 73 (147)
T ss_dssp EEEEEEESSCHHHHHHHHHCHHH--HGGGCTTEEEEEEEEEETTE-EEEEEEEEE---TT-EE-EEEE-EEEE-EETTTT
T ss_pred EEEEEEeCCCHHHHHHHHhChhh--hhhhcccccEEEEEEeCCCc-cEEEEEEEe---CC-ce-EEEE-EEEE-EcCCCc
Confidence 55677899999999999999865 77999998888887765432 333333331 21 11 1121 1111 122232
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCC-cccchh-hhHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNS-STKFEK-TTHFALL 418 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~-~s~~~~-~i~~~mL 418 (728)
. |....+.- |. . ...+-|.++|.++ + |+|+|....+++|.+ +.. ...+.. .+-..+-
T Consensus 74 ~-i~~~~~~g---~~--~-----~~~~~~~~~~~~~------g-T~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 132 (147)
T 2d4r_A 74 R-NRFFSPEG---DF--D-----RYEGTWVFLPEGE------G-TRVVLTLTYELTIPI---FGGLLRKLVQKLMQENVE 132 (147)
T ss_dssp E-EEEEEEEE---SC--S-----EEEEEEEEEECSS------S-EEEEEEEEEECCCTT---TTTTTHHHHHHHHHHHHH
T ss_pred E-EEEEeccC---Ch--h-----heEEEEEEEECCC------C-cEEEEEEEEecCCcc---HHHHHHHHHHHHHHHHHH
Confidence 2 22233321 11 1 1134688899764 4 999999999999866 321 121111 1112223
Q ss_pred HHHHHHHHHhhc
Q 004828 419 SQVAGLKEYIGA 430 (728)
Q Consensus 419 ~~Va~LRe~~~~ 430 (728)
..+.+|++.+++
T Consensus 133 ~~l~~lk~~~e~ 144 (147)
T 2d4r_A 133 SLLKGLEERVLA 144 (147)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455666666654
No 84
>3tfz_A Cyclase; helix-GRIP, BET V1-like superfamily, biosynthetic protein; HET: CXS; 2.39A {Streptomyces SP}
Probab=96.16 E-value=0.13 Score=48.92 Aligned_cols=147 Identities=13% Similarity=0.057 Sum_probs=85.1
Q ss_pred EEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCC
Q 004828 260 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG 339 (728)
Q Consensus 260 ~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DG 339 (728)
.+.....|++||++||++|.|.+. -++|-+.+..+++++.-++. ..+...... .+. .+-|...+. .+..+
T Consensus 6 ~v~~si~I~ap~~~V~~~v~D~~~--~p~~~P~~~~~~v~~~~~~~-~~~~~~~~~----~G~-~~~~~s~~~--~~~~~ 75 (172)
T 3tfz_A 6 HVEHTVTVAAPADLVWEVLADVLG--YADIFPPTEKVEILEEGQGY-QVVRLHVDV----AGE-INTWTSRRD--LDPAR 75 (172)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGG--HHHHCSSEEEEEEEEEETTE-EEEEEEEEE----TTE-EEEEEEEEE--EETTT
T ss_pred EEEEEEEeCCCHHHHHHHHHhHHH--HHhhCcccceEEEEecCCCE-EEEEEEEec----CCE-EEEEEEEEE--EeCCC
Confidence 345566899999999999999976 88999999999999875433 333333321 111 122332222 22222
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc--ccccCCcc-c-----chh
Q 004828 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC--RWKKNSST-K-----FEK 411 (728)
Q Consensus 340 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl--~w~p~~~s-~-----~~~ 411 (728)
-.|..++++.+ |-.+ .+-+-|.++|.++ +.|+|++.+..++++-+ ..+-.... . +.+
T Consensus 76 -~~i~~~~~~~~------gpf~--~~~g~w~f~~~~~------~~t~V~~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~ 140 (172)
T 3tfz_A 76 -RVIAYRQLETA------PIVG--HMSGEWRAFTLDA------ERTQLVLTHDFVTRAAGDDGLVAGKLTPDEAREMLEA 140 (172)
T ss_dssp -TEEEEEEEECC------TTEE--EEEEEEEEEEEET------TEEEEEEEEEEEECCCCTTSSBTTTBCHHHHHHHHHH
T ss_pred -CEEEEEEeeCC------CChh--hcEEEEEEEECCC------CcEEEEEEEEEEEcChhHHHhhccccCchhhHHHHHH
Confidence 23455555321 2122 2345788999864 57999999999877543 11100000 0 112
Q ss_pred hhHHHHHHHHHHHHHHhhcC
Q 004828 412 TTHFALLSQVAGLKEYIGAN 431 (728)
Q Consensus 412 ~i~~~mL~~Va~LRe~~~~~ 431 (728)
.+-..+...+++||+++++.
T Consensus 141 ~l~~~~~~~L~~lk~~aE~~ 160 (172)
T 3tfz_A 141 VVERNSVADLNAVLGEAERR 160 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHH
Confidence 22233345678888887653
No 85
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=95.76 E-value=0.17 Score=46.96 Aligned_cols=143 Identities=8% Similarity=-0.057 Sum_probs=79.8
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEE-EEEEEEcCCC
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVF-SRQWFRGQDG 339 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~-LRswRr~~DG 339 (728)
+.....|++||++||++|.|.+. ..+|.+.+.+ ++.+++..-..-...+. +.+ .-+|.. ++....+...
T Consensus 5 i~~~~~i~ap~e~Vw~~l~D~e~--~~~w~p~~~~---~~~~~~~~~~~~~~~~~----g~~-~~~~~~~~~~~~~~~~~ 74 (162)
T 2pcs_A 5 GNGSIELKGTVEEVWSKLMDPSI--LSKCIMGCKS---LELIGEDKYKADLQIGI----AAV-KGKYDAIIEVTDIKPPY 74 (162)
T ss_dssp EEEEEEEESCHHHHHHHHTCHHH--HHHHSTTEEE---EEEEETTEEEEEEEECC----GGG-CEEEEEEEEEEEEETTT
T ss_pred EeeEEEecCCHHHHHHHhcCHHH--HHhhCCCceE---eEEeCCCeEEEEEEEEe----eeE-EEEEEEEEEEEecCCCc
Confidence 44556899999999999999865 6789876544 44444443222212221 112 123432 2222333444
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHH-H
Q 004828 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFAL-L 418 (728)
Q Consensus 340 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~m-L 418 (728)
.+.+......- ++.+++ ..-|.++|..+ +.|+|+|-...+++|.+.. ....+......++ -
T Consensus 75 ~~~~~~~~~~~------~~~~~~---~~~~~l~~~~~------~gT~v~~~~~~~~~g~l~~---~~~~l~~~~~~~~~~ 136 (162)
T 2pcs_A 75 HYKLLVNGEGG------PGFVNA---EGVIDLTPIND------ECTQLTYTYSAEVGGKVAA---IGQRMLGGVAKLLIS 136 (162)
T ss_dssp EEEEEEEEEET------TEEEEE---EEEEEEEESSS------SEEEEEEEEEEEEESGGGG---GCHHHHHHHHHHHHH
T ss_pred EEEEEEEecCC------CccEEE---EEEEEEEecCC------CcEEEEEEEEEEECCCHHH---hhHHHHHHHHHHHHH
Confidence 55554433211 233333 35688888654 5699999999999998722 2222222233333 2
Q ss_pred HHHHHHHHHhhcC
Q 004828 419 SQVAGLKEYIGAN 431 (728)
Q Consensus 419 ~~Va~LRe~~~~~ 431 (728)
..+.+|++.+++.
T Consensus 137 ~~~~~lk~~~e~~ 149 (162)
T 2pcs_A 137 DFFKKIQKEIAKS 149 (162)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccc
Confidence 4567788877764
No 86
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=95.37 E-value=0.61 Score=43.92 Aligned_cols=112 Identities=9% Similarity=0.008 Sum_probs=70.3
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEe-ccCcCCCCCC-CCeEEEEEEEEEcCC
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTY-DPKYLTRWQS-KRDFVFSRQWFRGQD 338 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~-kp~~~P~~vs-pRDFV~LRswRr~~D 338 (728)
+.....|++||++||++|.|.. + |-..+.+....+..+++ ...... +-.. +... ..-|..-..+. .+
T Consensus 9 v~~s~~I~ap~e~v~~lv~Dve---~--w~~~yp~~~p~~~~~~~--~~~~~~a~l~v--g~~~~~~~~~s~~~~~--~~ 77 (161)
T 3p9v_A 9 LNRDLEIPASYDEVFDLLADVP---K--SASHFPKVDKLVDLGNN--AYRWEMEKVGV--DKHAIQSVYACTYHAD--KE 77 (161)
T ss_dssp EEEEEEESSCHHHHHHHHTCHH---H--HHTTSTTEEEEEEEETT--EEEEEECCBSS--GGGCBCCEEEEEEEEE--TT
T ss_pred EEEEEEEcCCHHHHHHHHhChh---h--hHhhCCCeEEEEEcCCC--ceEEEEEEEee--eeEEEEEEEEEEEEEc--CC
Confidence 3445589999999999999862 3 88889999988888876 222223 2111 1222 23454433332 22
Q ss_pred CeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCcc
Q 004828 339 GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWC 399 (728)
Q Consensus 339 GsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl 399 (728)
+ -.|..+++.- |-. + .+-+.|.++|.++ +.|+|++.+..++++.+
T Consensus 78 ~-~~I~~~~~~g---~~~----~--~l~g~w~f~p~~~------g~t~V~~~~~~e~~~pl 122 (161)
T 3p9v_A 78 A-GKITWSPIKG---EGN----G--VVSGSWTLSAKGD------NATAVKFQTSAELTVPL 122 (161)
T ss_dssp T-TEEEEEECTT---STT----E--EEEEEEEEEESSS------SCEEEEEEEEEEEEECS
T ss_pred C-CEEEEEEecC---ccc----e--eEEEEEEEEECCC------CeEEEEEEEEEEEcCcc
Confidence 2 2345555532 111 1 2336899999875 57999999999999766
No 87
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=95.34 E-value=0.1 Score=49.48 Aligned_cols=108 Identities=9% Similarity=0.049 Sum_probs=69.1
Q ss_pred ceeeeEEEEE-cccccccccceeeeEEEeCceeeeeccCC---CCCCCCCcceeeeecCceeEeeccceeeeCceEEEEE
Q 004828 46 FEYFGWVYHM-GTNSIGHEYCHLRFLFIRGKYVEMYKRDP---HENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMR 121 (728)
Q Consensus 46 ~~~eGw~y~~-~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p---~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~ 121 (728)
...-+=+|.+ ..||.=+.=-|.|||+|=+..|=|=|--| ... .-=+|.-+=-.+..|..-.-+ ..-|-|+
T Consensus 13 lvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~--~Y~vr~~~~L~gm~V~~~e~e----~~p~~~~ 86 (140)
T 3qwm_A 13 LVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSV--TYSFRQSFSLYGMQVLLFENQ----YYPNGIR 86 (140)
T ss_dssp EEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCC--CCCCEEEECCTTEEEEEECCS----SCTTEEE
T ss_pred EEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCC--ceEEEEEeeecceEEEcccCC----CCceEEE
Confidence 3344556665 46666665568999999998887765222 121 222222222233344432222 3567899
Q ss_pred EEeccC---cCcceeeeccCHHHHHHHHHHHHHHHHHHHHH
Q 004828 122 LYNRLD---ESKKGEIACATAGEARKWMEAFDQAKQQAEVE 159 (728)
Q Consensus 122 ~yn~~~---~~~~~~~~a~~~eea~~W~~a~~~a~~~~~~~ 159 (728)
|++..+ +..-+.++|.|.+|-.+|+++|++||+..+.+
T Consensus 87 l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~em 127 (140)
T 3qwm_A 87 LTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQEM 127 (140)
T ss_dssp EEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 998763 23448999999999999999999999855443
No 88
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=95.17 E-value=0.32 Score=45.39 Aligned_cols=142 Identities=11% Similarity=-0.024 Sum_probs=76.2
Q ss_pred EEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCC
Q 004828 260 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG 339 (728)
Q Consensus 260 ~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DG 339 (728)
.+.....|++|+++||+++.|... -++|.+.+.+++++ ++. ....+.+. +.......|.. +.....+ +
T Consensus 5 ~v~~s~~I~ap~e~V~~~~~D~e~--~p~w~p~~~~v~~~---~~~--~~~~~~~~---~~G~~~~~~~~-~v~e~~p-~ 72 (155)
T 3ggn_A 5 VVRDAVTIGKPAEQLYAVWRDLPG--LPLLMTHLRSVEVL---DDK--RSRWTVEA---PAPLGTVSWEA-ELTADEP-G 72 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGG--HHHHSTTCCEEEEC---SSS--EEEEEEEC---CTTTCEEEEEE-EEEEEET-T
T ss_pred EEEEEEEEcCCHHHHHHHHhCHHH--hHHHhhhceEEEEe---cCC--eeEEEEEe---cCCcceEEEEE-EEEEecC-C
Confidence 355667899999999999999876 88999988776664 433 22333332 21112233321 2222222 2
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCC-ccccccCCcccchhhhHHHH-
Q 004828 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSG-WCRWKKNSSTKFEKTTHFAL- 417 (728)
Q Consensus 340 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KG-wl~w~p~~~s~~~~~i~~~m- 417 (728)
. .|..+++.-|. . . ..+.|.++|.++ .+.|+|++.+..++.| .+. .....+...+..++
T Consensus 73 ~-~i~~~~~~g~~---~--~-----~~g~~~F~~~~~-----~~gT~V~~~~~~~~~~~~l~---~~~~~~~~~~~~~~v 133 (155)
T 3ggn_A 73 K-RIAWRSLPGAR---I--E-----NSGEVLFRPAPG-----ARGTEVVVRLTYRPPGGSAG---AVIARMFNQEPSQQL 133 (155)
T ss_dssp T-EEEEEECTTCS---S--C-----EEEEEEEEECSS-----SSCEEEEEEEEEC-------------------CHHHHH
T ss_pred C-EEEEEECCCCC---c--c-----eEEEEEEEECCC-----CCceEEEEEEEEECCCcHHH---HHHHHHhhhhHHHHH
Confidence 2 24556654431 1 1 234678889842 2469999999999876 441 11122222233333
Q ss_pred HHHHHHHHHHhhcCC
Q 004828 418 LSQVAGLKEYIGANP 432 (728)
Q Consensus 418 L~~Va~LRe~~~~~~ 432 (728)
-..+.+|++++++--
T Consensus 134 ~~~l~r~k~~~e~~~ 148 (155)
T 3ggn_A 134 RDDLMRFKREQELGL 148 (155)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhh
Confidence 356888888887643
No 89
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=94.97 E-value=0.96 Score=41.15 Aligned_cols=140 Identities=9% Similarity=-0.024 Sum_probs=73.5
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEE-EEEEEEcCCC
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVF-SRQWFRGQDG 339 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~-LRswRr~~DG 339 (728)
+.....|++||++||++|.|.+. -.+|.+.+ .-++ ++++.-.+....+. +... ..|-. ++....+...
T Consensus 15 i~~~~~i~ap~e~Vw~~l~D~~~--~~~w~p~~---~~~~-~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~ 83 (157)
T 2ns9_A 15 YEGSFEVSKTPEEVFEFLTDPKR--FSRAFPGF---KSVE-VEDGSFTIELRLSL----GPLR-GDARVRASFEDLEKPS 83 (157)
T ss_dssp EEEEEEESSCHHHHHHHHTCHHH--HGGGSTTE---EEEE-EETTEEEEEEEEES----SSSE-EEEEEEEEEEEEETTT
T ss_pred EeeEEEEcCCHHHHHHHHcCHHH--HHhhCCCc---eEEE-ECCCEEEEEEEEEE----ccee-EEEEEEEEEEecCCCc
Confidence 44556899999999999999865 67898764 4444 55553222222211 1121 12321 1211223333
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHH-
Q 004828 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALL- 418 (728)
Q Consensus 340 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL- 418 (728)
.+.+...... .+ +-+. ...-|.++|.+ +.|+|++-.+.+++|.+ ......+...+..+++
T Consensus 84 ~i~~~~~~~~---~~---~~~~---~~~~~~l~~~~-------~gT~v~~~~~~~~~g~l---~~~~~~~~~~~~~~~~~ 144 (157)
T 2ns9_A 84 KATVKGSGRG---AG---STLD---FTLRFAVEPSG-------GGSRVSWVFEGNVGGLA---ASMGGRVLDSLARRMIN 144 (157)
T ss_dssp EEEEEEEEEC---SS---EEEE---EEEEEEEEEET-------TEEEEEEEEEEEEEEGG---GGSCHHHHHHHHHHHHH
T ss_pred EEEEEEEecC---CC---ccEE---EEEEEEEEeCC-------CcEEEEEEEEEEECcCH---HHhhHHHHHHHHHHHHH
Confidence 3433222211 00 1122 23568888865 36999999999999877 2222222233333222
Q ss_pred HHHHHHHHHhhc
Q 004828 419 SQVAGLKEYIGA 430 (728)
Q Consensus 419 ~~Va~LRe~~~~ 430 (728)
..+.+|++.+++
T Consensus 145 ~~~~~lk~~~e~ 156 (157)
T 2ns9_A 145 DVISGVKRELGE 156 (157)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhc
Confidence 455667766653
No 90
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=94.76 E-value=0.034 Score=52.20 Aligned_cols=82 Identities=16% Similarity=0.365 Sum_probs=60.5
Q ss_pred cceeeeEEEeCceeeeeccCCCCC----CCCCcceeeeecCceeEeeccceeeeCceEEEEEEEeccCcCcceeeeccCH
Q 004828 64 YCHLRFLFIRGKYVEMYKRDPHEN----PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYNRLDESKKGEIACATA 139 (728)
Q Consensus 64 ~~~~Ryfvl~~~~~~~yK~~p~~~----~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~ 139 (728)
-.+.|||+|=.+.|=|.+..|... -+..|++...|-. .||. -..-+-|.|+-+. .+.+.++|.|.
T Consensus 43 ~~~eR~l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~~V~~---~ed~------~~~~~aFeI~g~~--~~~i~v~~~s~ 111 (132)
T 1v61_A 43 EKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNR---LDEI------EGSDCMFEITGST--VERIVVHCNNN 111 (132)
T ss_dssp CCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCST---TCSS------SSSCCCEEEECSS--SCEEEECCCCS
T ss_pred cceEEEEEEcCCeEEEEEecCCCceEEEEEEEecceeEEEe---cccc------ccCccEEEEecCC--CceEEEEeCCH
Confidence 458999999999999999888532 0357888766543 1221 1234567777544 37799999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004828 140 GEARKWMEAFDQAKQQA 156 (728)
Q Consensus 140 eea~~W~~a~~~a~~~~ 156 (728)
||-.+|+++|+.|++.|
T Consensus 112 eE~~~Wl~~L~~~i~~~ 128 (132)
T 1v61_A 112 QDFQEWMEQLNRLTKSG 128 (132)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999998543
No 91
>3f08_A Uncharacterized protein Q6HG14; NESG Q6HG14_bachk Q6HG14 BUR153, structural genomics, PSI-2; 2.20A {Bacillus thuringiensis serovar konkukiorganism_taxid} SCOP: d.129.3.8 PDB: 3cnw_A
Probab=94.41 E-value=0.65 Score=43.32 Aligned_cols=136 Identities=11% Similarity=-0.016 Sum_probs=78.6
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
+....+|++||++||++|.|... -++|.+.+.++++++ ++. |-...+.. + . .+.-|-...+++.
T Consensus 4 v~~si~I~Ap~~~VW~~l~d~~~--~~~w~p~v~~~~~~~--GG~--vR~~~~~~----G-~----~~~Erl~~~D~~~- 67 (146)
T 3f08_A 4 TTTSMEIFGSTEQVWQLIGGFNS--LPDWLPYIPSSKLTE--GGR--VRHLANPD----G-E----TIIERLEVFNDKE- 67 (146)
T ss_dssp EEEEEEESSCHHHHHHHHCSTTC--HHHHCTTCCEEEEEG--GGT--EEEEECTT----S-C----EEEEEEEEEETTT-
T ss_pred EEEEEEEeCCHHHHHHHHhcccc--HHHhCCCeEEEEEeC--CCe--EEEEEeCC----C-C----EEEEEEEEEeCCC-
Confidence 34566899999999999999865 578999999998875 232 32322221 1 1 2222222223322
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~ 420 (728)
..+.++=++- ..| + ....+-|-+.|... ++.|.|+|....++.|... ..+.+.+-..+-..
T Consensus 68 ~~~~y~iv~g-~~~-----~--~~~~~~~~v~p~~~-----~~gt~v~w~~~~~p~g~~~------~~~~~~~~~~~~~~ 128 (146)
T 3f08_A 68 RYYTYSIMNA-PFP-----V--TNYLSTIQVKEGTE-----SNTSLVEWSGTFTPVAVSD------EEAINLVHGIYSDG 128 (146)
T ss_dssp TEEEEEEEEC-SSS-----E--EEEEEEEEEEECSS-----TTCEEEEEEEEEEESSSCH------HHHHHHHHHHHHHH
T ss_pred CEEEEEEecC-CCc-----e--eEEEEEEEEEEecC-----CCcEEEEEEEEEEeCCCCH------HHHHHHHHHHHHHH
Confidence 2222222221 122 2 34556788899432 2579999999999977661 11222233333467
Q ss_pred HHHHHHHhhcC
Q 004828 421 VAGLKEYIGAN 431 (728)
Q Consensus 421 Va~LRe~~~~~ 431 (728)
+++|++.++..
T Consensus 129 L~~Lk~~~e~~ 139 (146)
T 3f08_A 129 LKALQHAFLDL 139 (146)
T ss_dssp HHHHHHHTTC-
T ss_pred HHHHHHHHhhh
Confidence 77888777654
No 92
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=92.13 E-value=0.48 Score=45.42 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=62.5
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
...+.+.|-|..- + | -|.++|.|+|.....-||- +|... +-=....++.+|+|+-.. .+.|+|
T Consensus 49 ge~Ilk~G~v~Kr--k--G-l~~kkR~liLT~~PrL~Yv-dp~~~---~~KGeIpls~~l~ve~k~-----~~~F~I--- 111 (151)
T 1w1g_A 49 NNLILKMGPVDKR--K--G-LFARRRQLLLTEGPHLYYV-DPVNK---VLKGEIPWSQELRPEAKN-----FKTFFV--- 111 (151)
T ss_dssp TCCEEEEEEEEEE--E--T-TEEEEEEEEEETTTEEEEE-ETTTT---EEEEEECCCTTCEEEESS-----SSEEEE---
T ss_pred CCcEEEEEEEEec--c--c-CcceeEEEEEcCCceEEEE-cCccc---cccceEecCCCeeEEEcC-----CCEEEE---
Confidence 3456699988872 2 2 4579999999988887776 45433 111234467899999443 444444
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
...++...|-+. ..+|..|+.||++|+.
T Consensus 112 ---~Tp~RtY~~~d~-~~~AqeWv~aI~~~~~ 139 (151)
T 1w1g_A 112 ---HTPNRTYYLMDP-SGNAHKWCRKIQEVWR 139 (151)
T ss_dssp ---EETTEEEEEECT-TSCHHHHHHHHHHHHH
T ss_pred ---ECCCceEEEEcC-ccCHHHHHHHHHHHHH
Confidence 223477788786 7899999999999974
No 93
>2le1_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, unknown function; NMR {Thermobifida fusca}
Probab=91.14 E-value=2.4 Score=38.77 Aligned_cols=140 Identities=11% Similarity=0.028 Sum_probs=75.9
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCce-EEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCC
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY-DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG 339 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~T-DIiY~~~kp~~~P~~vspRDFV~LRswRr~~DG 339 (728)
+.....|++||++||++|.|... -++|.+.+.++++++.=+... .+....++ ... .+.-+-...++.+
T Consensus 4 v~~si~I~ap~e~Vw~~l~d~~~--~~~w~p~v~~~~~~~g~~~~~G~~r~~~~~-----~G~----~~~e~i~~~d~~~ 72 (151)
T 2le1_A 4 LRRSVEVAAPAADVWTLVGDFSA--IHRWHPQVSAPTLRGASPHTPGAERVFGAG-----TEE----ELVERLVERDESA 72 (151)
T ss_dssp EEEEEEESSCHHHHHHHHTTSGG--GGGTCTTCCCEEEESSCTTSTTCEEEESSS-----SSS----CEEEEEEEEETTT
T ss_pred EEEEEEecCCHHHHHHHHhCcCc--HHHhcCCceEEEEECCCCCCCCeEEEEEeC-----CCC----EEEEEEEEEeCCC
Confidence 44566899999999999999865 579999988887765321111 12222111 111 2222222223222
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEec--CCccccccCCcccchhhhHHHH
Q 004828 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHS--SGWCRWKKNSSTKFEKTTHFAL 417 (728)
Q Consensus 340 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~--KGwl~w~p~~~s~~~~~i~~~m 417 (728)
..+.++-+.-+ .| ++. ..+-|.++|.++ +.|+|+|-...++ .|-.... .. +.+. .+
T Consensus 73 -~~~~~~~~~g~-~~-----~~~--~~~~~~l~~~~~------~gt~v~w~~~f~~~p~~~~~~~---~~-~~~~---~~ 130 (151)
T 2le1_A 73 -RRLVYTMPDPP-FP-----ITN--HRAVLEVVPRDD------RHCTVVWTAMFDCSPETARELE---SV-IGDG---VF 130 (151)
T ss_dssp -TEEEEEEEECS-SS-----EEE--EEEEEEEEESSS------SCEEEEEEEEEEECHHHHHHHH---HH-TTTT---HH
T ss_pred -CEEEEEEecCC-CC-----cee--EEEEEEEEECCC------CcEEEEEEEEEEecCCCCCHHH---HH-HHHH---HH
Confidence 22333333211 11 222 245688888543 5699999999987 4332110 01 1122 23
Q ss_pred HHHHHHHHHHhhcCCC
Q 004828 418 LSQVAGLKEYIGANPA 433 (728)
Q Consensus 418 L~~Va~LRe~~~~~~~ 433 (728)
-..+++|++.++.+..
T Consensus 131 ~~~L~~Lk~~~e~~~~ 146 (151)
T 2le1_A 131 AVGLNALAERYGRLEH 146 (151)
T ss_dssp HHHHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHhhcccc
Confidence 3577888888877653
No 94
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=90.63 E-value=0.63 Score=42.86 Aligned_cols=98 Identities=9% Similarity=0.147 Sum_probs=59.5
Q ss_pred eEEEEEcccccccccceeeeEEEeCceeeeecc-CCCCC---CCCCc---ceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 50 GWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKR-DPHEN---PGIKP---IRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 50 Gw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~-~p~~~---~~~~p---ir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
.+|-.+++++.. +.|||+|......+|.. +|... +..++ |+....|..+.+-.+-++..... +-|+|
T Consensus 17 t~l~K~~~~~~~----k~r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~--~~FsI 90 (131)
T 1mai_A 17 SQLLKVKSSSWR----RERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPED--RCFSI 90 (131)
T ss_dssp EEEEEESSSSCE----EEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGG--GEEEE
T ss_pred CeEEEECCCCcc----eeEEEEECCCCCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCcc--ceEEE
Confidence 467777776543 56999998766555553 33221 12233 45555666554422222221111 24555
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.-.. +.+-+.|.|.|.+||..|+..|+..+.
T Consensus 91 iy~~-~~k~LdlvA~s~~e~~~Wv~gL~~L~~ 121 (131)
T 1mai_A 91 VFKD-QRNTLDLIAPSPADAQHWVQGLRKIIH 121 (131)
T ss_dssp EESS-SCCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EECC-CCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 4443 357899999999999999999998874
No 95
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=89.56 E-value=3.4 Score=44.57 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=70.6
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeec--ccee-eeCceEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL--GRRR-FNHGDVYVM 120 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~--Gr~~-~~~~~~yv~ 120 (728)
....++|.+..+... -|. .+.|||+|=..+|=+=|++.... ...-.|.-+==.++.|+|. |... .+...-+.|
T Consensus 255 r~Li~~G~l~~~~~~-~~k--~~~r~~fLF~d~Ll~~k~~~~~~-~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F 330 (402)
T 2dfk_A 255 SELIYTGEMAWIYQP-YGR--NQQRVFFLFDHQMVLCKKDLIRR-DILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAF 330 (402)
T ss_dssp CCEEEEEEEEEESST-TCC--CEEEEEEEETTEEEEEEECSSCT-TCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEE
T ss_pred cceEEeceEEEEecc-CCc--eEEEEEEeeCCEEEEEEeccccC-CceEEeeeeeccceEEEecCCCCccccccccceeE
Confidence 456799999887542 222 46799999999887777653222 1112222222245666653 3211 111223578
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVE 159 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~~~ 159 (728)
.|+++.. ...+.|.|.|.+|-..|+++|++|+.+...+
T Consensus 331 ~i~~~~~-~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~~ 368 (402)
T 2dfk_A 331 KLHNKET-EEVHLFFAKKLEEKIRWLRAFREERKMVQED 368 (402)
T ss_dssp EEEESSS-SCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEECCC-CeEEEEEeCCHHHHHHHHHHHHHHHHHHHhh
Confidence 8887653 4678999999999999999999999855433
No 96
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=89.03 E-value=2.2 Score=45.09 Aligned_cols=106 Identities=8% Similarity=0.160 Sum_probs=63.3
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCC------CC------C-CCcceeeeecCceeEeeccc
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHE------NP------G-IKPIRRGVIGPTLMVEELGR 109 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~------~~------~-~~pir~~~i~~~~rv~d~Gr 109 (728)
.....++|.+.....+ .-.+.||++|=..+|=+-|++... .+ + ..-.|..+--.++.|+|...
T Consensus 250 ~R~li~~G~l~~~~~~----~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~ 325 (368)
T 1xcg_A 250 TRKMIHEGPLTWRISK----DKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT 325 (368)
T ss_dssp GSCEEEEEEEEECCSS----SCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS
T ss_pred cceEEeecceEeeecC----CCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecccC
Confidence 3566799998764332 224789999998888777765321 00 0 00112222223455666421
Q ss_pred eeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 110 RRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 110 ~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
..+.+++++. +...+...+.|.|.|.+|-..|+++|++|++.|
T Consensus 326 ---~~~~f~i~~~-~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~a 368 (368)
T 1xcg_A 326 ---DKRAFFIICT-SKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 368 (368)
T ss_dssp ---CSSEEEEEEC-CSSSTTCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred ---CCceEEEEEe-cCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 2334555432 111335778999999999999999999998643
No 97
>3p51_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 2.06A {Nitrosospira multiformis}
Probab=88.64 E-value=10 Score=35.80 Aligned_cols=139 Identities=13% Similarity=0.009 Sum_probs=77.6
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccCCCCce-EEEEeecCc-eEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCC
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDL-ELVDSYDGH-YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQD 338 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~-eVVE~lDe~-TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~D 338 (728)
+....+|+|||++||.+|.|... - .|.+.+.++ ++++--+++ .--+... . + .+.=|--..+++
T Consensus 4 v~~si~I~Ap~~~VW~~v~Df~~--~-~w~P~v~~s~e~~eg~~~~~vGsvR~~-g-----g------~v~Erl~~~D~~ 68 (160)
T 3p51_A 4 VYNSIVVDAPVERVWSRIRNFHD--F-SWAPSLIKSCKKVGGGGGYSVGARRLL-N-----G------EFLDTLIAYSEI 68 (160)
T ss_dssp EEEEEEESSCHHHHHHHHCCTTC--C-TTCTTTCCCEEEESSCCTTCTTCEEEE-T-----T------TEEEEEEEEETT
T ss_pred EEEEEEECCCHHHHHHHHhCcCC--C-eEccCceEEEEEEecCCCCCCCCEEEE-C-----C------EEEEEEEEEcCC
Confidence 34566899999999999999876 4 999999888 776543211 1112211 1 1 121111112222
Q ss_pred CeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHH
Q 004828 339 GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALL 418 (728)
Q Consensus 339 GsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL 418 (728)
. ..+.++=++- ..|..++.++. ..+-+-+.|.+. .+.|.|+|.+..++.+-. +...+-..+-
T Consensus 69 ~-~~~sY~ii~g-~l~~~~~~~~~--y~~~~~v~p~~~-----~ggt~V~w~~~~~~~~~~---------~~~~~~~~~~ 130 (160)
T 3p51_A 69 E-RRIMYSMDEG-PSPVSSGEIYN--YVGNLHLLPVTI-----DDTTFVEWSGSWESASTE---------AVEYMNTVYR 130 (160)
T ss_dssp T-TEEEEEEEEC-STTSSTTTEEE--EEEEEEEEEETT-----TTEEEEEEEEEEEESCSH---------HHHHHHHHHH
T ss_pred C-cEEEEEEecC-CCcccccceeE--EEEEEEEEEecC-----CCCEEEEEEEEEEeCHHH---------HHHHHHHHHH
Confidence 2 2222222221 23322223443 356788999863 257999999999997521 1122222333
Q ss_pred HHHHHHHHHhhcCC
Q 004828 419 SQVAGLKEYIGANP 432 (728)
Q Consensus 419 ~~Va~LRe~~~~~~ 432 (728)
..+++|++.++...
T Consensus 131 ~~L~~Lk~~~e~~~ 144 (160)
T 3p51_A 131 SLLADLAAEFTSES 144 (160)
T ss_dssp HHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHhhcc
Confidence 56788888887643
No 98
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=88.54 E-value=3.5 Score=45.21 Aligned_cols=108 Identities=15% Similarity=0.235 Sum_probs=69.9
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeec--cce-eeeCceEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEEL--GRR-RFNHGDVYVM 120 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~--Gr~-~~~~~~~yv~ 120 (728)
....++|.+..+...+ |. .+.|||+|=..+|=+=|++.... ...=.|.-+-=.++.|+|. |.. ..+...-+.|
T Consensus 332 r~li~~G~l~~~~~~~-~~--~~~r~~fLF~d~Ll~~k~~~~~~-~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F 407 (466)
T 2pz1_A 332 SELIYSGELTRVTQPQ-AK--SQQRMFFLFDHQLIYCKKDLLRR-DVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAF 407 (466)
T ss_dssp SCEEEEEEEEEECTTT-CC--EEEEEEEEETTEEEEEEECSSCT-TCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEE
T ss_pred ceeEEeeeEEEEecCC-CC--eeEEEEEEECCEEEEEEeccccC-CceEEeeeeeccceEEEeCCCCcccccccccceeE
Confidence 4567999998875421 21 36799999999887777653222 1112222222345666653 321 1222344788
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
.|+++.. ...+.|.|.|.+|-..|+++|++|+.+.
T Consensus 408 ~i~~~~~-~~~~~l~a~s~~eK~~W~~~i~~a~~~~ 442 (466)
T 2pz1_A 408 RLHRGAT-GDSHLLCTRKPEQKQRWLKAFAREREQV 442 (466)
T ss_dssp EEECSSS-CCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCC-CeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 8988653 4578999999999999999999998643
No 99
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=87.82 E-value=2.7 Score=44.55 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=70.0
Q ss_pred CcceeeeEEEEEccccccc--------ccceeeeEEEeCceeeeeccCCCCCC-----CCCcceeeeecCceeEeeccce
Q 004828 44 GYFEYFGWVYHMGTNSIGH--------EYCHLRFLFIRGKYVEMYKRDPHENP-----GIKPIRRGVIGPTLMVEELGRR 110 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~--------~~~~~Ryfvl~~~~~~~yK~~p~~~~-----~~~pir~~~i~~~~rv~d~Gr~ 110 (728)
+...++|.+.....++-|. .=.+.||++|=..+|=+=|.++...+ ..--.|.-+--.++.|+|.-.
T Consensus 208 g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~- 286 (353)
T 1kz7_A 208 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK- 286 (353)
T ss_dssp CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT-
T ss_pred hhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCC-
Confidence 4567999987665444452 22468999999888877776653210 111123333334566665421
Q ss_pred eeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHHHHHH
Q 004828 111 RFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAEVEL 160 (728)
Q Consensus 111 ~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~~~~ 160 (728)
| .-+.|.|+... ....+.|.|.|.||-..|+++|++|++++....
T Consensus 287 ---~-~~~~F~i~~~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~~ 331 (353)
T 1kz7_A 287 ---G-DTKKFEIWYNA-REEVYIIQAPTPEIKAAWVNAIRKVLTSQLQAC 331 (353)
T ss_dssp ---T-BTTEEEEEETT-TTEEEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---C-CCceEEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 12346666643 356789999999999999999999998554433
No 100
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=87.49 E-value=1.1 Score=48.70 Aligned_cols=97 Identities=10% Similarity=0.135 Sum_probs=60.4
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeeccceeeeCceEEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
....++|.++.+...+ .+.|||+|=..+|=+-|.+... .-=+|.-+==.++.|++ ...+..-+.|.|.
T Consensus 242 r~li~~g~l~~~~~~~-----~~~r~~fLF~d~Ll~~k~~~~~---~y~~k~~i~L~~l~v~~----~~~~~~~~~f~i~ 309 (434)
T 3mpx_A 242 REFLKEGTLMKVTGKN-----RRPRHLFLMNDVLLYTYPQKDG---KYRLKNTLAVANMKVSR----PVMEKVPYALKIE 309 (434)
T ss_dssp CCEEECCEEEEEETTE-----EEEEEEEEESSEEEEEEECTTS---CEEEEEEEEC-----CC----CCCTTSCSEEEEE
T ss_pred cceEecceEEEEeCCC-----ceEEEEEEECCEEEEEEecCCC---eEEEEEEEEcCCcEEEe----cCCCCCCeeEEEe
Confidence 3456999998876543 3689999999999888855321 11122222223444432 1222344667775
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQQ 155 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 155 (728)
++ .+.+.|-|.|.+|...|+++|++||++
T Consensus 310 ~~---~~~~~l~a~s~~ek~~W~~~i~~ai~e 338 (434)
T 3mpx_A 310 TS---ESCLMLSASSCAERDEWYGCLSRALPE 338 (434)
T ss_dssp CS---SCEEEEECSSHHHHHHHHHHHHHC---
T ss_pred cC---CeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 43 457999999999999999999999963
No 101
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=86.54 E-value=4.3 Score=42.00 Aligned_cols=107 Identities=11% Similarity=0.076 Sum_probs=64.2
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCC-CCcceeeeecCceeEeeccceeeeCceEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPG-IKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRL 122 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~-~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~ 122 (728)
+...+.|.+........+.. .+.||++|=...|=+=|++...... .-=.|.-+--.++.|+|.- .|. -+.|.|
T Consensus 201 g~li~~~~~~~~~~~~~~~~-~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~----~~~-~~~F~i 274 (311)
T 1nty_A 201 GELILQESFQVWDPKTLIRK-GRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHV----EGD-PCKFAL 274 (311)
T ss_dssp CCEEEEEEEEEECSSSSSCC-EEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCC----TTC-TTEEEE
T ss_pred CCceeeeeEEEEcCcccccc-cceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEcc----CCC-CceEEE
Confidence 34557777766543322222 3789999998888777665322101 1112322333556776531 111 124566
Q ss_pred Eecc--CcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 123 YNRL--DESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 123 yn~~--~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
+... .....+.|.|.|.+|-.+|+++|++||+++
T Consensus 275 ~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e~ 310 (311)
T 1nty_A 275 WVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQER 310 (311)
T ss_dssp EESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhhh
Confidence 6532 245678999999999999999999999653
No 102
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=85.51 E-value=5.3 Score=42.94 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=64.7
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeecccee-eeCceEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRR-FNHGDVYVMRL 122 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~-~~~~~~yv~~~ 122 (728)
+...++|.+......+- -.+.||++|=..+|=+-|++. + .-=+|.-+--..+.|+|..-.. -+...-+.|.|
T Consensus 232 grli~~G~l~~~~~~~~---~~~~~~~fLF~d~Ll~~k~k~--~--~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i 304 (406)
T 2vrw_B 232 GRPKIDGELKITSVERR---SKTDRYAFLLDKALLICKRRG--D--SYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLL 304 (406)
T ss_dssp CSEEEEEEEEEECSSCC---SCEEEEEEEESSEEEEEEEET--T--EEEEEEEEETTTEEEEC--------CTTCEEEEE
T ss_pred CcccccccEEEEecCCC---ccceEEEEecCCEEEEEEecC--C--ceEEEEEecccceeeeecCCCCccCCccceeeEE
Confidence 34568999877643221 137899999888887777652 1 2223333333455665532211 11223467777
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
.+.. ....++|.|.|.+|-.+|+++|++|+.++
T Consensus 305 ~~~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 337 (406)
T 2vrw_B 305 IEDQ-GAQGYELFFKTRELKKKWMEQFEMAISNI 337 (406)
T ss_dssp EETT-CSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EecC-CCceEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 7653 24568999999999999999999998643
No 103
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=84.61 E-value=4.2 Score=45.84 Aligned_cols=104 Identities=16% Similarity=0.193 Sum_probs=64.3
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC------------CCCCcceeeee-cCceeEeeccce
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN------------PGIKPIRRGVI-GPTLMVEELGRR 110 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~------------~~~~pir~~~i-~~~~rv~d~Gr~ 110 (728)
....++|.+.....+. =.+.|||+|=..+|=+-|++.... ++...+.+.+| -.++.|+|..-+
T Consensus 410 R~LI~eG~l~~~~~~~----k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~d 485 (536)
T 3odw_A 410 KKLVHEGPLTWRVTKD----KAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD 485 (536)
T ss_dssp SCEEEEEEEEEESCC-------CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEECTTC
T ss_pred ceeeeecceEEEecCC----CeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeeccccc
Confidence 5677999997765322 236899999999888887654210 01111111122 234566665432
Q ss_pred eeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 111 RFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 111 ~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
.+.+|++... ......++|.|.|.+|-..|++.|++||+++
T Consensus 486 ---~~~ffli~~~--~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~ 526 (536)
T 3odw_A 486 ---HKAFYVLFTW--DQEAQIYELVAQTVSERKNWCALITETAGSL 526 (536)
T ss_dssp ---TTEEEEEEC-----CCCEEEEECSSHHHHHHHHHHHHHHHHTS
T ss_pred ---CCceEEEecC--CCCceEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence 3456665433 2345678999999999999999999999644
No 104
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=83.63 E-value=5 Score=42.43 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=63.2
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC------------CCCCcceeeeec-CceeEeeccce
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN------------PGIKPIRRGVIG-PTLMVEELGRR 110 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~------------~~~~pir~~~i~-~~~rv~d~Gr~ 110 (728)
....++|.+.....+. =.+.|||+|=..+|=+-|++.... ++.....+.+|. .++.|+|..-+
T Consensus 257 r~li~eG~l~~~~~~~----~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~~ 332 (377)
T 3p6a_A 257 KKLVHEGPLTWRVTKD----KAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD 332 (377)
T ss_dssp SCEEEEEEEEEESSSS----CEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTTC
T ss_pred ceEEEECCcEEEecCC----CeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhccccccc
Confidence 4567999997654332 237899999999888887664210 000011122232 44556653322
Q ss_pred eeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 111 RFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 111 ~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.+.+|+. +........++|.|.|.+|-..|++.|++|++
T Consensus 333 ---~~~~~~i--~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~ 371 (377)
T 3p6a_A 333 ---HKAFYVL--FTWDQEAQIYELVAQTVSERKNWCALITETAG 371 (377)
T ss_dssp ---TTEEEEE--ETTCTTCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ---cceeEEE--ecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence 2334443 33334566779999999999999999999984
No 105
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=83.27 E-value=13 Score=35.12 Aligned_cols=33 Identities=9% Similarity=0.023 Sum_probs=29.3
Q ss_pred EEEEeecCCHHHHHHHHHcCCCcccccccCCCCce
Q 004828 262 KAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDL 296 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~ 296 (728)
.....|++||++||+++.|+.. -++|-+.+.+.
T Consensus 30 ~~si~I~ap~eeVy~~~~D~e~--lP~W~~~l~~~ 62 (156)
T 2qpv_A 30 IIHLSVEKPWAEVYDFAANPGN--MPRWAAGLAGG 62 (156)
T ss_dssp EEEEEESSCHHHHHHHHHCGGG--GGGTCGGGTTC
T ss_pred EEEEEEcCCHHHHHHHHHChhh--HHHHHHhhhhh
Confidence 5566899999999999999976 88999999885
No 106
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=82.58 E-value=7.9 Score=41.19 Aligned_cols=105 Identities=8% Similarity=0.094 Sum_probs=64.4
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC------------CC-CCcceeeeecCceeEeeccce
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN------------PG-IKPIRRGVIGPTLMVEELGRR 110 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~------------~~-~~pir~~~i~~~~rv~d~Gr~ 110 (728)
....++|.+.....+ .=...||++|=..+|=+-|++.... ++ ..-+|..+--.++.|+|..-.
T Consensus 255 R~li~eG~l~~~~~~----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~d 330 (385)
T 1txd_A 255 RKMIHEGPLVWKVNR----DKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATD 330 (385)
T ss_dssp SCEEEEEEEEEESSS----SCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC-
T ss_pred ceEEEECcEEEEcCC----CCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccccccC
Confidence 466799999764322 1246799999888887766543110 00 001122222235566664221
Q ss_pred eeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHHH
Q 004828 111 RFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQAE 157 (728)
Q Consensus 111 ~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~~ 157 (728)
.+.+|++... ......++|-|.|.+|-..|+++|++|++++.
T Consensus 331 ---~~~~f~i~~~--~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~ 372 (385)
T 1txd_A 331 ---NKALFVISMS--DNGAQIYELVAQTVSEKTVWQDLICRMAASVK 372 (385)
T ss_dssp ---CCEEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---CceEEEEEEc--CCCceEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 3456666553 23356789999999999999999999997553
No 107
>1tw0_A Pathogenesis-related class 10 protein SPE-16; seven antiparallel beta-sheet, plant protein; 2.20A {Pachyrhizus erosus} SCOP: d.129.3.1 PDB: 1txc_A*
Probab=80.86 E-value=31 Score=32.29 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=81.8
Q ss_pred EEEEeecCCHHHHHHHHH-cCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 262 KAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~-d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
..+..|++||+++|.++. |... ..+.|=+.+.+++++|-=.+.-.|.+..+.+. ... -++.-|--.. ++..
T Consensus 6 ~~e~~i~a~a~kvw~~~~~d~~~-~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G-----~~~-~~~kErl~~~-D~~~ 77 (157)
T 1tw0_A 6 RDETSSSVAPAKLYKALTKDSDT-IAQKIDGPIQSIELVEGNGGVGTIKKITANEG-----DKT-SFVLQKVDAI-DEAN 77 (157)
T ss_dssp EEEEEESSCHHHHHHHHHHTGGG-GGGGSCSSEEEEEEEESSSSTTCEEEEEEEET-----TEE-EEEEEEEEEE-ETTT
T ss_pred EEEEEecCCHHHHHHHHhcCcch-hhhhHHhhccEEEEEeCCCCCCeEEEEEeeCC-----Ccc-ceEEEEEEEE-eccC
Confidence 345578999999999988 8764 36777788888888876222223555444321 110 1222121112 2333
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~ 420 (728)
..+.++-++-+-.|- + + +...+-+-+.|.++ +.|.++|.+..++++-.. +. ....+.+...+...
T Consensus 78 ~~~~y~iieGd~~~~--~-~--~~~~~~~~v~~~~~------~gs~v~w~~~y~~~~~~~--~~--~~~~~~~~~~~~~~ 142 (157)
T 1tw0_A 78 LGYDYSIVGGTGLPE--S-L--EKLSFETKVVAGSG------GGSISKVTLKFHTKGDAP--LS--DAVRDDALAKGAGF 142 (157)
T ss_dssp TEEEEEEEECTTSCT--T-E--EEEEEEEEEEECSS------SSEEEEEEEEEEESTTCC--CC--HHHHHHHHHHHHHH
T ss_pred CEEEEEEEecCCCcc--c-e--EEEEEEEEEEecCC------CCEEEEEEEEEEECCCCC--CC--HHHHHHHHHHHHHH
Confidence 444444444332221 1 1 23345677778543 359999999999886541 11 11111112233455
Q ss_pred HHHHHHHhhcCCC
Q 004828 421 VAGLKEYIGANPA 433 (728)
Q Consensus 421 Va~LRe~~~~~~~ 433 (728)
..+|.+|+.++|.
T Consensus 143 ~k~ie~yll~~p~ 155 (157)
T 1tw0_A 143 FKAIEGYVLANPA 155 (157)
T ss_dssp HHHHHHHHHHCGG
T ss_pred HHHHHHHHHhCcc
Confidence 6778888877754
No 108
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=80.31 E-value=8.8 Score=43.55 Aligned_cols=104 Identities=18% Similarity=0.125 Sum_probs=67.0
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeeecCceeEeecccee-eeCceEEEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVIGPTLMVEELGRRR-FNHGDVYVMRL 122 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i~~~~rv~d~Gr~~-~~~~~~yv~~~ 122 (728)
+...++|.+......+ .=.+.||++|=..+|=+-|++. . .-=+|.-+=-.++.|++.--.. -....-+.|.|
T Consensus 404 grll~~G~l~~~~~~~---~~~~~r~~fLF~d~Ll~~k~~~--~--~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i 476 (587)
T 3ky9_A 404 GRPKIDGELKITSVER---RSKMDRYAFLLDKALLICKRRG--D--SYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLL 476 (587)
T ss_dssp CCEEEEEEEEEECSSC---CSCEEEEEEEETTEEEEEEEET--T--EEEEEEEEEGGGEEEEEC-----CCCTTCEEEEE
T ss_pred CceEEEeeEEEEeccC---CCcceEEEEEECCEEEEEEecC--C--EEEeeeeechhhceeeecCCCCcccccccceeEE
Confidence 3356899998764332 1236899999999988888762 1 2224444445567777642211 11223466777
Q ss_pred EeccCcCcceeeeccCHHHHHHHHHHHHHHHHH
Q 004828 123 YNRLDESKKGEIACATAGEARKWMEAFDQAKQQ 155 (728)
Q Consensus 123 yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 155 (728)
.+... ...++|.|.|.+|-..|+++|++|+++
T Consensus 477 ~~~~~-~~~~~L~A~S~eeK~~Wi~~I~~ai~~ 508 (587)
T 3ky9_A 477 IEDQG-AQGYELFFKTRELKKKWMEQFEMAISN 508 (587)
T ss_dssp EETTC----CEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEcCC-CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 77543 467999999999999999999999953
No 109
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=79.59 E-value=6.1 Score=46.86 Aligned_cols=98 Identities=18% Similarity=0.335 Sum_probs=64.0
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC-CCCCcceeeeecCceeEeeccceeeeCceEEEEEEEe
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN-PGIKPIRRGVIGPTLMVEELGRRRFNHGDVYVMRLYN 124 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~-~~~~pir~~~i~~~~rv~d~Gr~~~~~~~~yv~~~yn 124 (728)
+.-.||+-.-.. .+.+-=++.=+|||.-.-|..||.+-... .-+.|+ .++++.|.= +.+-+ .=++|.|+|
T Consensus 540 ~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~-~~~~~~~~~ 610 (772)
T 3zvr_A 540 VIRKGWLTINNI-GIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSV------DNLKLRDVE-KGFMS-SKHIFALFN 610 (772)
T ss_dssp EEEEEEEEESSS-CCC---CCEEEEEEESSEEEEESSTTCCCEEEEEEC------TTEEEEEC---------CEEEEEEE
T ss_pred ceeeeeeeeccc-ccccCCCccceeeccccccccccchhhhcccccccc------cccccchhh-hcccc-ccccccccC
Confidence 557899976432 23223356669999999999999643221 013333 466654432 11212 237899999
Q ss_pred ccCc-----CcceeeeccCHHHHHHHHHHHHHH
Q 004828 125 RLDE-----SKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 125 ~~~~-----~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
+... .+|++|+|.|-|+...|+.+|..|
T Consensus 611 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 643 (772)
T 3zvr_A 611 TEQRNVYKDYRQLELACETQEEVDSWKASFLRA 643 (772)
T ss_dssp TTSSCSBTTBSEEEEEESSHHHHHHHHHHHHHT
T ss_pred CccccccchhhhhhhhccccccchhhHHhhhhc
Confidence 9876 579999999999999999999655
No 110
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A 2lpx_A
Probab=77.80 E-value=23 Score=33.16 Aligned_cols=148 Identities=9% Similarity=0.039 Sum_probs=83.8
Q ss_pred EEEEeecCCHHHHHHHHH-cCCCcccccccC-CCCceEEEEeecC-ceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCC
Q 004828 262 KAVGVIDASADTVFEVVL-NLERHQRYEWDM-LTGDLELVDSYDG-HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQD 338 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~-d~~~~~R~eWD~-~~~~~eVVE~lDe-~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~D 338 (728)
..+..|++||+++|.++. |... ..+.|-+ .+.+++++|- |+ .-.|.+..+.+. ++=-++.-|--.. ++
T Consensus 6 ~~e~~i~ap~~~vw~~~~~d~~~-~~pk~~P~~i~s~~~~eG-dgg~Gsvr~~~~~~G------~~~~~~kErl~~~-D~ 76 (159)
T 1e09_A 6 ESEFTSEIPPPRLFKAFVLDADN-LVPKIAPQAIKHSEILEG-DGGPGTIKKITFGEG------SQYGYVKHKIDSI-DK 76 (159)
T ss_dssp EEEEEESSCHHHHHHHHTTTHHH-HHHHHCTTTEEEEEEEES-SSSTTCEEEEEECCS------SSCEEEEEEEEEE-ET
T ss_pred EEEEEecCCHHHHHHHHhcCccc-cchhhChhhccEEEEEeC-CCCCceEEEEEecCC------CCceEEEEEEEEE-cC
Confidence 345578999999999998 7653 3579998 5688888876 32 223555555431 1101232222222 33
Q ss_pred CeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHH
Q 004828 339 GTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALL 418 (728)
Q Consensus 339 GsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL 418 (728)
....+.++-++-+-.+ .- -+...+-+-+.|.++ +.|.++|.+..+.++-.. +. ..-.+.....+.
T Consensus 77 ~~~~~~y~iieG~~~~---~~--~~~~~~~~~v~~~~~------~gs~v~wt~~y~~~~~~~--~~--~~~~~~~~~~~~ 141 (159)
T 1e09_A 77 ENYSYSYTLIEGDALG---DT--LEKISYETKLVASPS------GGSIIKSTSHYHTKGNVE--IK--EEHVKAGKEKAS 141 (159)
T ss_dssp TTTEEEEEECCCTTTG---GG--EEEEEEEEEECCCTT------SSEEEEEEEEEEECSSCC--CC--HHHHHHHHHHHH
T ss_pred CCCEEEEEEEecccCc---cc--ceEEEEEEEEEecCC------CCEEEEEEEEEEECCCCC--CC--HHHHHHHHHHHH
Confidence 3455555555443221 00 123345566667543 459999999999876541 21 111112233344
Q ss_pred HHHHHHHHHhhcCCC
Q 004828 419 SQVAGLKEYIGANPA 433 (728)
Q Consensus 419 ~~Va~LRe~~~~~~~ 433 (728)
....+|.+|+.+++.
T Consensus 142 ~~~k~ie~yll~~~~ 156 (159)
T 1e09_A 142 NLFKLIETYLKGHPD 156 (159)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhChh
Confidence 567788888888765
No 111
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=77.48 E-value=13 Score=39.90 Aligned_cols=102 Identities=8% Similarity=0.096 Sum_probs=61.5
Q ss_pred CCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC------------CCCCcc-eeeeecCceeEeeccc
Q 004828 43 KGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN------------PGIKPI-RRGVIGPTLMVEELGR 109 (728)
Q Consensus 43 ~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~------------~~~~pi-r~~~i~~~~rv~d~Gr 109 (728)
.....++|.+.....+. =.+.||++|=..+|=+-|++.... ++...+ +.-+--.++.|++..
T Consensus 292 ~r~li~eG~l~~~~~~~----~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~- 366 (418)
T 3t06_A 292 TRKMIHEGPLTWRISKD----KTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVA- 366 (418)
T ss_dssp GSCEEEEEEEEECCBTT----BCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECS-
T ss_pred cceeEEeceEEEEeCCC----CeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecccc-
Confidence 45667999998755322 235799999988888877653210 000111 111212345555432
Q ss_pred eeeeCceEEEEEEEecc--CcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 110 RRFNHGDVYVMRLYNRL--DESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 110 ~~~~~~~~yv~~~yn~~--~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
-....+++ ++.. ...+.++|.|.|.+|-..|+++|++|+.
T Consensus 367 --~~~~~f~l---~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~ 408 (418)
T 3t06_A 367 --TDKRAFFI---ICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR 408 (418)
T ss_dssp --SCSSEEEE---EECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred --ccCceEEE---EecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 12234443 3433 2236889999999999999999999985
No 112
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=75.85 E-value=11 Score=39.52 Aligned_cols=98 Identities=13% Similarity=0.156 Sum_probs=63.6
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCC--CCC----CCCcceeeeecCceeEeeccceeeeCceE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPH--ENP----GIKPIRRGVIGPTLMVEELGRRRFNHGDV 117 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~--~~~----~~~pir~~~i~~~~rv~d~Gr~~~~~~~~ 117 (728)
....++|.+..+| -.+.||++|=+.+|=+-|.+-. .-| ..-=+|.-+-=.++.|+|..-. ...-
T Consensus 245 r~li~eG~l~~~g-------~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~---~~~~ 314 (354)
T 1dbh_A 245 NEFIMEGTLTRVG-------AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDT---NEYK 314 (354)
T ss_dssp CCEEEEEEEEETT-------CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCS---SSCC
T ss_pred ceEEEEeeEEEEe-------cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCcc---cccC
Confidence 4567999998874 2478899998888877776521 111 0111223333345666653110 1233
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 118 yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
+.|.|+++. ...+.|-|.|.+|-..|+++|++|.
T Consensus 315 ~~F~i~~~~--~~~~~l~a~s~~ek~~W~~~i~~~~ 348 (354)
T 1dbh_A 315 HAFEIILKD--ENSVIFSAKSAEEKNNWMAALISLQ 348 (354)
T ss_dssp SEEEECCTT--SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccEEEecCC--CCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 567777654 4679999999999999999999996
No 113
>2qim_A PR10.2B; trans-zeatin, cytokinin, plant hormones, plant protein, PR-1 protein, pathogenesis-related protein, allergen; HET: ZEA; 1.35A {Lupinus luteus} PDB: 3e85_A* 1xdf_A* 2k7h_A
Probab=73.94 E-value=29 Score=32.53 Aligned_cols=148 Identities=8% Similarity=0.000 Sum_probs=81.9
Q ss_pred EEEEEeecCCHHHHHHHHH-cCCCcccccccCCCCceEEEEeecC-ceEEEEEEeccCcCCCCCCCCeEEEEEEEEE-cC
Q 004828 261 VKAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDG-HYDVVYGTYDPKYLTRWQSKRDFVFSRQWFR-GQ 337 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~-d~~~~~R~eWD~~~~~~eVVE~lDe-~TDIiY~~~kp~~~P~~vspRDFV~LRswRr-~~ 337 (728)
+.....|++||++||.++. |... ..+.|=+.+.+++++|- |+ .-.|.+..+.+. . .+-.++..-. .+
T Consensus 6 ~~~e~~i~a~a~kvw~~~~~d~~~-~~pk~~~~i~s~~i~eG-dgg~Gsir~~~~~~g-----~---~~~~~kErl~~~D 75 (158)
T 2qim_A 6 FQDEYTSTIAPAKLYKALVTDADI-IIPKAVETIQSVEIVEG-NGGPGTIKKLTFIEG-----G---ESKYVLHKIEAID 75 (158)
T ss_dssp EEEEEEESSCHHHHHHHHTTTHHH-HHHHHCTTEEEEEEEES-SSSTTCEEEEEEEET-----T---EEEEEEEEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcCccc-hhhhHHhhCcEEEEEec-CCCCCeEEEEEEcCC-----C---cceeEEEEEEEEe
Confidence 3345578999999999998 7653 35777788888888876 32 223555444321 1 1211222111 12
Q ss_pred CCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHH
Q 004828 338 DGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFAL 417 (728)
Q Consensus 338 DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~m 417 (728)
+....+.++-++-+-.|- + + +...+-+-+.|.++ +.|.++|.+..++++-.. +. ....+.+...+
T Consensus 76 ~~~~~~~y~iieG~~~~~--~-~--~~~~~~~~v~~~~~------~gs~v~wt~~y~~~~~~~--~~--~~~~~~~~~~~ 140 (158)
T 2qim_A 76 EANLGYNYSIVGGVGLPD--T-I--EKISFETKLVEGAN------GGSIGKVTIKIETKGDAQ--PN--EEEGKAAKARG 140 (158)
T ss_dssp GGGTEEEEEEEEESSCCC--S-E--EEEEEEEEEEECST------TCEEEEEEEEEEESTTCC--CC--HHHHHHHHHHH
T ss_pred cCCCEEEEEEEeccCCcc--c-e--EEEEEEEEEEecCC------CCEEEEEEEEEEECCCCC--CC--HHHHHHHHHHH
Confidence 233444444443321110 1 1 23445677788543 359999999999886541 11 11111122333
Q ss_pred HHHHHHHHHHhhcCCC
Q 004828 418 LSQVAGLKEYIGANPA 433 (728)
Q Consensus 418 L~~Va~LRe~~~~~~~ 433 (728)
.....+|.+|+.++|.
T Consensus 141 ~~~~k~ie~yll~~p~ 156 (158)
T 2qim_A 141 DAFFKAIESYLSAHPD 156 (158)
T ss_dssp HHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhCcC
Confidence 4556788888888775
No 114
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=72.75 E-value=15 Score=38.84 Aligned_cols=110 Identities=11% Similarity=0.024 Sum_probs=61.4
Q ss_pred CcceeeeEEEEEcccc--cccccceeeeEEEeCceeeeeccCCCCCC----CCCcceeeeecCceeEeeccceeeeCceE
Q 004828 44 GYFEYFGWVYHMGTNS--IGHEYCHLRFLFIRGKYVEMYKRDPHENP----GIKPIRRGVIGPTLMVEELGRRRFNHGDV 117 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~--~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~----~~~pir~~~i~~~~rv~d~Gr~~~~~~~~ 117 (728)
+...++|.+....... +-..=.+.||++|=..+|=+=|.+..... ..-=.|.-+--.++.|+|.- .| .-
T Consensus 205 ~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~----~~-~~ 279 (354)
T 2rgn_B 205 GKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNL----QG-DP 279 (354)
T ss_dssp CCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESG----GG-CT
T ss_pred ccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeecc----CC-CC
Confidence 3455777765432111 00112478999998888877665542110 01112222222456666541 11 11
Q ss_pred EEEEEEec--cCcCcceeeeccCHHHHHHHHHHHHHHHH-HHHH
Q 004828 118 YVMRLYNR--LDESKKGEIACATAGEARKWMEAFDQAKQ-QAEV 158 (728)
Q Consensus 118 yv~~~yn~--~~~~~~~~~~a~~~eea~~W~~a~~~a~~-~~~~ 158 (728)
+.|.|+.. ......+.|-|.|.+|-..|+++|.+|++ |++.
T Consensus 280 ~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~ 323 (354)
T 2rgn_B 280 CRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQRDF 323 (354)
T ss_dssp TEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443 22357789999999999999999999998 4443
No 115
>3ijt_A SMU.440, putative uncharacterized protein; hypothetical protein, unknown function; 2.38A {Streptococcus mutans} SCOP: d.129.3.9 PDB: 2b79_A
Probab=72.49 E-value=3 Score=39.31 Aligned_cols=36 Identities=3% Similarity=0.140 Sum_probs=29.3
Q ss_pred EEEEEEeecCCHHHHHHHHHcCCCcccccccCCCCceE
Q 004828 260 LVKAVGVIDASADTVFEVVLNLERHQRYEWDMLTGDLE 297 (728)
Q Consensus 260 ~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~e 297 (728)
.+.....|+|+|++|+++|.|... -++|++.+.+++
T Consensus 19 ~i~~si~I~Appe~VW~~ltD~~~--~~~W~p~v~~~~ 54 (155)
T 3ijt_A 19 KFSFELAVNTKKEDAWTYYSQVNQ--WFVWEGDLEQIS 54 (155)
T ss_dssp EEEEEEEESSCHHHHHHHHHCGGG--GGGTSTTEEEEE
T ss_pred EEEEEEEEcCCHHHHHHHHhCccc--ccccchhhEeee
Confidence 445566899999999999999865 679999976554
No 116
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=72.45 E-value=23 Score=34.37 Aligned_cols=102 Identities=10% Similarity=0.221 Sum_probs=60.2
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC--CCCCcceeeeec-CceeEeeccceeeeCceEEEE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN--PGIKPIRRGVIG-PTLMVEELGRRRFNHGDVYVM 120 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~--~~~~pir~~~i~-~~~rv~d~Gr~~~~~~~~yv~ 120 (728)
....+||=++.-..+. . ...||++|=..+|=+=+++.... ..... ++-+|. ..+.|.+.-.. .+.+|++
T Consensus 69 R~Ll~eG~L~~k~~~~--~--~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~-~~pvi~L~~~~vre~a~d---~~~~fli 140 (185)
T 2lg1_A 69 KKLVRDGSVFLKNAAG--R--LKEVQAVLLTDILVFLQEKDQKYIFASLDQ-KSTVISLKKLIVREVAHE---EKGLFLI 140 (185)
T ss_dssp SCEEEEEEEEEECTTC--C--EEEEEEEEESSEEECCEEETTEEECCCCSS-SCSEEESSSCEEECCSSC---SSEEEEE
T ss_pred CceeeeceEEEeccCC--C--eeeEEEEeecCEEEEEEecCCEEEEEcccC-CCCeEeecceEEeccCCC---CCeEEEE
Confidence 4566899887543332 1 27899999888775544332111 00000 112221 23445544332 3456665
Q ss_pred EEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHH
Q 004828 121 RLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQ 155 (728)
Q Consensus 121 ~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 155 (728)
+.. .....-++|-|.|++|-..|+++|++|++.
T Consensus 141 ~~~--~~g~~~yel~a~s~~er~~W~~~I~~Ai~~ 173 (185)
T 2lg1_A 141 SMG--MTDPEMVEVHASSKEERNSWIQIIQDTINT 173 (185)
T ss_dssp CCS--SSCCCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred Eec--CCCCeEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 443 223567799999999999999999999963
No 117
>3kl1_A PYL2, putative uncharacterized protein AT2G26040; abscisic acid receptor, crystal, high resolution, PP2C, HORM receptor; 1.55A {Arabidopsis thaliana} PDB: 3kdi_A* 3kdh_A 3nr4_A* 3ns2_A* 3nj0_A* 3nj1_A* 3nmh_A* 3kaz_A 3kb0_A* 3kb3_A* 3ujl_A* 3nmp_A* 3nmt_A* 3nmv_A*
Probab=71.40 E-value=23 Score=34.79 Aligned_cols=111 Identities=13% Similarity=0.113 Sum_probs=63.7
Q ss_pred eecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEE--EcCCC---e
Q 004828 266 VIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWF--RGQDG---T 340 (728)
Q Consensus 266 vVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswR--r~~DG---s 340 (728)
.|++|+++++.++.|.+. -..|=+.+.++++++-=++--.|-+..+... .| +-.++..- .++.. +
T Consensus 42 ~I~Apa~~vW~lv~df~~--~~~w~p~I~s~e~~eGdg~vGsVR~~t~~~G-~p-------~~~vkErL~~iD~~~~~~s 111 (190)
T 3kl1_A 42 RIHAPASVVWPLIRRFDN--PERYKHFVKRCRLISGDGDVGSVREVTVISG-LP-------ASTSTERLEFVDDDHRVLS 111 (190)
T ss_dssp EESSCHHHHHHHHHCTTC--GGGTCSSEEEEEEEESSSSTTCEEEEEECSS-SS-------CEEEEEEEEEEETTTTEEE
T ss_pred EecCCHHHHHHHHhCCCC--hhHcccccCEEEEEcCCCCCCeEEEEEecCC-Cc-------cceEEEEEEEEeccCCEEE
Confidence 689999999999999865 5679888898888754332234555555432 11 22333321 22221 3
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEe-cCCcc
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH-SSGWC 399 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD-~KGwl 399 (728)
|.|..- ..| ...| ++. ..+.|..+.+ .+.+.|.|+|....| +.|+.
T Consensus 112 Y~iieG-----~~~-~~~Y-~s~-----~~v~~~~~~~-~~~~gt~V~Ws~~f~~p~g~~ 158 (190)
T 3kl1_A 112 FRVVGG-----EHR-LKNY-KSV-----TSVNEFLNQD-SGKVYTVVLESYTVDIPEGNT 158 (190)
T ss_dssp EEEEEE-----SSS-CCSC-EEE-----EEEEEEEC-C-CCCEEEEEEEEEEEECCTTCC
T ss_pred EEEEec-----CCc-cccE-EEE-----EEEEeccccc-CCCCcEEEEEEEEEEcCCCCC
Confidence 444332 122 2232 333 2344542100 123689999999999 78887
No 118
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C
Probab=69.66 E-value=51 Score=32.08 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=74.1
Q ss_pred EeecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCc-eEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCC---e
Q 004828 265 GVIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH-YDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG---T 340 (728)
Q Consensus 265 gvVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~-TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DG---s 340 (728)
..|+|||++||++|.|... -..|-+.+..+ +++--++. -.|-+..+... +| --++.-|--..+++. +
T Consensus 33 ~~I~Apa~~VW~~v~df~~--l~~w~P~V~s~-~~eG~~ggvGsvR~lt~~~G-~p-----~~~vkErL~~~D~~~~~~s 103 (183)
T 3rt2_A 33 KHIKAPLHLVWSIVRRFDE--PQKYKPFISRC-VVQGKKLEVGSVREVDLKSG-LP-----ATKSTEVLEILDDNEHILG 103 (183)
T ss_dssp EEESSCHHHHHHHHTCTTC--GGGTCTTEEEE-EESSSCCCTTCEEEEEECCS-ST-----TCEEEEEEEEEETTTTEEE
T ss_pred EEEeCCHHHHHHHHhCcCc--hhhcCccceEE-EeeCCCCCCCcEEEEEeCCC-Cc-----cceEEEEEEEEECCCCEEE
Confidence 3799999999999998865 56899988777 44321111 12444444432 11 113322222223332 3
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecC-CCCCCCCCceEEEEEEeEe-cCCccccccCCcccchhhhHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLN-LPMGSNGAKCLVTQMLEIH-SSGWCRWKKNSSTKFEKTTHFALL 418 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~-~~~~~~~~~c~VT~I~qvD-~KGwl~w~p~~~s~~~~~i~~~mL 418 (728)
|.|..- ..| -+. ..+-+-+.|.+ . +.+.|.|+|....| +.|+. ..-...|...+...=|
T Consensus 104 Y~Iieg-----~lp-~~~------y~ati~v~p~~~d----G~~gt~V~Ws~~fd~~~g~~---~e~~~~~~~~i~~~~L 164 (183)
T 3rt2_A 104 IRIVGG-----DHR-LKN------YSSTISLHSETID----GKTGTLAIESFVVDVPEGNT---KEETCFFVEALIQCNL 164 (183)
T ss_dssp EEEEEE-----SCS-CTT------CEEEEEEEEEEET----TEEEEEEEEEEEEECCTTCC---HHHHHHHHHHHHHHHH
T ss_pred EEEecC-----Ccc-eeE------EEEEEEEEEecCC----CCCCEEEEEEEEEEcCCCCC---HHHHHHHHHHHHHHHH
Confidence 444432 223 223 24555677865 3 11279999999999 56775 2111233334444445
Q ss_pred HHHHHHHHHhhc
Q 004828 419 SQVAGLKEYIGA 430 (728)
Q Consensus 419 ~~Va~LRe~~~~ 430 (728)
..++..-|-+..
T Consensus 165 ~~L~~~~e~~~~ 176 (183)
T 3rt2_A 165 NSLADVTERLQA 176 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 555555555544
No 119
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=69.34 E-value=6.9 Score=40.93 Aligned_cols=95 Identities=17% Similarity=0.257 Sum_probs=58.4
Q ss_pred cceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC-------CCCCcceeeeecCceeEeeccce--eeeC-
Q 004828 45 YFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN-------PGIKPIRRGVIGPTLMVEELGRR--RFNH- 114 (728)
Q Consensus 45 ~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~-------~~~~pir~~~i~~~~rv~d~Gr~--~~~~- 114 (728)
...++|.+.. . -| +.||++|=..+|=+=|.+.... -...|+. .+.|++.--. ...+
T Consensus 231 ~li~~G~l~~---~-~~----~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~------~l~v~~~~d~~~~~~~s 296 (346)
T 2z0q_A 231 VLCCHGELKN---N-RG----VKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVK------DLTLEDLQDGEVRLGGS 296 (346)
T ss_dssp CEEEEEEEEE---T-TS----CEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGG------GCEEEECCTTTSCCCSC
T ss_pred EEEEeceeEE---C-CC----cEEEEEECCCcEEEEEEeccCCceeeeeecCCcchh------hceeeecCCCccccCcc
Confidence 4568888764 1 13 6899999888887776543211 0123333 3444443110 0000
Q ss_pred ---------ceEEEEEEEecc-CcCcceeeeccCHHHHHHHHHHHHHHH
Q 004828 115 ---------GDVYVMRLYNRL-DESKKGEIACATAGEARKWMEAFDQAK 153 (728)
Q Consensus 115 ---------~~~yv~~~yn~~-~~~~~~~~~a~~~eea~~W~~a~~~a~ 153 (728)
..-+.|.|+.+. .....++|.|.|.+|-..|+++|++|+
T Consensus 297 ~~g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 297 LRGAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp C--CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 123567776543 235678999999999999999999997
No 120
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=69.03 E-value=61 Score=28.87 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=52.3
Q ss_pred ceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCccee--eeecCceeEeeccceeeeCceEEEEEEE
Q 004828 46 FEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRR--GVIGPTLMVEELGRRRFNHGDVYVMRLY 123 (728)
Q Consensus 46 ~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~--~~i~~~~rv~d~Gr~~~~~~~~yv~~~y 123 (728)
..+||=+..+-+ -.....+++||+|=+-.|=|=++++... + +.+- .+--..+.|+|..= ++.+-..|.|-
T Consensus 8 lv~eG~l~el~~--~~~k~~~~v~~FLfND~Ll~a~~~~~~~-~--~~~~~~~~~L~~~~v~d~~d---~~~~~n~f~i~ 79 (113)
T 1zc3_B 8 LVYNGDLVEYEA--DHMAQLQRVHGFLMNDCLLVATWLPQRR-G--MYRYNALYPLDRLAVVNVKD---NPPMKDMFKLL 79 (113)
T ss_dssp EEEEEEEEEEET--TTCCEEEEEEEEEESSEEEEEEEECCTT-S--CEEEEEEEETTTCEEEEECC---BTTBSSEEEEE
T ss_pred EEEeCcEEEEcc--ccCCCCccEEEEecCCEEEEEEEeccCc-c--cEEEEEEEEcccCEEEECCC---CcccceEEEEE
Confidence 447776665533 2334456776666665554444444321 1 1111 11112245554311 12233333333
Q ss_pred eccCcCcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 124 NRLDESKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 124 n~~~~~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
.. .+.-.+.|.|++|-..|+.+|++|++
T Consensus 80 ~~---~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 80 MF---PESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp ET---TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eC---CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 22 23468889999999999999999985
No 121
>1icx_A Protein LLR18A, LLPR10.1A; 7-stranded beta sheet, C-terminal helix, allergen; 1.95A {Lupinus luteus} SCOP: d.129.3.1 PDB: 1ifv_A
Probab=66.54 E-value=44 Score=31.12 Aligned_cols=148 Identities=9% Similarity=0.007 Sum_probs=80.0
Q ss_pred EEEEeecCCHHHHHHHHH-cCCCcccccccCCCCceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCe
Q 004828 262 KAVGVIDASADTVFEVVL-NLERHQRYEWDMLTGDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGT 340 (728)
Q Consensus 262 Ka~gvVdaspe~VfdlL~-d~~~~~R~eWD~~~~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGs 340 (728)
..+..|++||+++|.++. |... ..+.|=+.+.+++++|-=.+.-.|.+..+.+. ... -++.-|--.. ++..
T Consensus 6 ~~e~~i~a~a~kvw~~~~~d~~~-~~pk~~~~i~s~~i~eG~g~~Gsir~~~~~~G-----~~~-~~~kErl~~~-D~~~ 77 (155)
T 1icx_A 6 ENEQSSTVAPAKLYKALTKDSDE-IVPKVIEPIQSVEIVEGNGGPGTIKKIIAIHD-----GHT-SFVLHKLDAI-DEAN 77 (155)
T ss_dssp EEEEEESSCHHHHHHHHTTTHHH-HHHHHSTTEEEEEEEESSSSTTCEEEEEEESS-----SSE-EEEEEEEEEE-EGGG
T ss_pred EEEEEecCCHHHHHHHHhcCcch-hcchhhhhccEEEEEecCCCCCeEEEEEEecC-----Ccc-eeEEEEEEEE-eccC
Confidence 345578999999999988 7653 35777788888888876222223555544421 110 1222221112 2233
Q ss_pred EEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHHHHHH
Q 004828 341 YTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFALLSQ 420 (728)
Q Consensus 341 YvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~mL~~ 420 (728)
..+.++-++-+-.|- + + +...+-+-+.|.++ +.|.++|.+..+++|-. +. ....+.+...+..-
T Consensus 78 ~~~~y~iieGd~~~~--~-~--~~~~~~~~v~~~~~------~gs~v~w~~~y~~~~~~---~~--~~~~~~~~~~~~~~ 141 (155)
T 1icx_A 78 LTYNYSIIGGEGLDE--S-L--EKISYESKILPGPD------GGSIGKINVKFHTKGDV---LS--ETVRDQAKFKGLGL 141 (155)
T ss_dssp TEEEEEEEEETTSCT--T-E--EEEEEEEEEEECGG------GCEEEEEEEEEEESSSS---CC--HHHHTTHHHHHHHH
T ss_pred CEEEEEEEecCCCcc--c-e--EEEEEEEEEEecCC------CCEEEEEEEEEEECCCC---CC--HHHHHHHHHHHHHH
Confidence 444444443332111 1 1 23345667778543 35999999999988654 21 10111111223345
Q ss_pred HHHHHHHhhcCCC
Q 004828 421 VAGLKEYIGANPA 433 (728)
Q Consensus 421 Va~LRe~~~~~~~ 433 (728)
+.+|.+|+-++|.
T Consensus 142 ~k~ie~yll~~p~ 154 (155)
T 1icx_A 142 FKAIEGYVLAHPD 154 (155)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 6778888887763
No 122
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=65.27 E-value=1.3 Score=48.75 Aligned_cols=100 Identities=10% Similarity=0.072 Sum_probs=0.0
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCC--CC-----------CCCcc-eeeeecCceeEeeccc
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHE--NP-----------GIKPI-RRGVIGPTLMVEELGR 109 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~--~~-----------~~~pi-r~~~i~~~~rv~d~Gr 109 (728)
....++|.++..++ .+.|||+|=..+|=+-|..... .+ ....+ |.-+--.++.|++.--
T Consensus 251 r~li~eG~l~~~~~-------~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d 323 (510)
T 3jzy_A 251 RKLLHSGKLYKTKS-------NKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTD 323 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEeceEEEcCC-------CcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCC
Confidence 34558888876532 2589999988888777744322 00 01112 2323333444544200
Q ss_pred eeeeCceEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHHH
Q 004828 110 RRFNHGDVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQA 156 (728)
Q Consensus 110 ~~~~~~~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~~ 156 (728)
-+..-+.|.|+.+. +.++|.|.|.+|...|+++|++|++++
T Consensus 324 ---~~~~~~~F~i~~~~---~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 324 ---PSSDEPVFHISHID---RVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp -----------------------------------------------
T ss_pred ---CCccccceeeeccc---eeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 01234578887753 479999999999999999999999743
No 123
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=64.74 E-value=9.2 Score=38.07 Aligned_cols=48 Identities=8% Similarity=0.317 Sum_probs=34.0
Q ss_pred CCCcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCCCCCCcceeeee
Q 004828 42 EKGYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHENPGIKPIRRGVI 98 (728)
Q Consensus 42 ~~~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~~~~~pir~~~i 98 (728)
..+.+-.+|||+.- ..+-.++ ++|+|||++..+.||+.+ ..++++|.+
T Consensus 17 ~~~~~~~~g~l~~~--~~~~~~w-~~rw~vl~~~~~~~~~~~------~~~~k~G~L 64 (228)
T 3tfm_A 17 GPGSPYFHSFLYMN--GGLMNSW-KRRWCVLKDETFLWFRSK------QEALKQGWL 64 (228)
T ss_dssp ----CCEEEEEEEC--CTTTCCC-EEEEEEEETTEEEEESSC------CCSSEEEEE
T ss_pred CCCCCceEEEEeec--Ccccccc-eEEEEEEeCCEEEEeccC------CCcceEEEE
Confidence 44566799999984 4455556 999999999999999943 346676654
No 124
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=62.08 E-value=21 Score=43.60 Aligned_cols=100 Identities=14% Similarity=0.214 Sum_probs=64.6
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeCceeeeeccCCCCC--CC----CCcceeeeecCceeEeeccceeeeCceE
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRGKYVEMYKRDPHEN--PG----IKPIRRGVIGPTLMVEELGRRRFNHGDV 117 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~~~~~~yK~~p~~~--~~----~~pir~~~i~~~~rv~d~Gr~~~~~~~~ 117 (728)
....++|.+..+++. +.||++|=..+|=+=|++.... ++ .--+|.-+-=.++.|+|.--. ...-
T Consensus 442 r~Li~eG~l~~~~~k-------~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~---~~~~ 511 (1049)
T 3ksy_A 442 NEFIMEGTLTRVGAK-------HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDT---NEYK 511 (1049)
T ss_dssp SCCCCEEEEEETTCS-------SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCS---SSCC
T ss_pred ceEEEeceEEEEccC-------ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCC---cccc
Confidence 455699999887632 7899999999888877653210 00 112222222334444432110 1234
Q ss_pred EEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHHHHH
Q 004828 118 YVMRLYNRLDESKKGEIACATAGEARKWMEAFDQAKQQ 155 (728)
Q Consensus 118 yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~~ 155 (728)
+.|.|.++.. ..+.|.|.|.+|-.+|+++|+.+.++
T Consensus 512 ~~F~I~~~~~--~~~~L~A~S~eeK~~Wi~~I~~~q~k 547 (1049)
T 3ksy_A 512 HAFEIILKDE--NSVIFSAKSAEEKNNWMAALISLQYR 547 (1049)
T ss_dssp SEEEECCTTS--CCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCC--CEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 5777777653 68899999999999999999988753
No 125
>3jrs_A PYL1, putative uncharacterized protein AT5G46790; plant hormone receptor, abscisic acid, hormone recepto; HET: A8S; 2.05A {Arabidopsis thaliana}
Probab=52.36 E-value=82 Score=31.39 Aligned_cols=135 Identities=13% Similarity=0.129 Sum_probs=68.8
Q ss_pred eecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCce-EEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCC---eE
Q 004828 266 VIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY-DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG---TY 341 (728)
Q Consensus 266 vVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~T-DIiY~~~kp~~~P~~vspRDFV~LRswRr~~DG---sY 341 (728)
.|+|||++||.+|.|.+. -+.|=+.+..|++++--++.. .|-+..+... .| -..+.-|--..+++. +|
T Consensus 61 ~I~ApadkVW~lv~Df~~--l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~~G-~p-----~~~vkErL~~lDde~~~~sY 132 (208)
T 3jrs_A 61 RIHAPPETVWSVVRRFDR--PQIYKHFIKSCNVSEDFEMRVGCTRDVNVISG-LP-----ANTSRERLDLLDDDRRVTGF 132 (208)
T ss_dssp EESSCHHHHHHHHTCTTC--GGGTCTTEEEEECCTTCCCSTTCEEEEEECTT-SS-----CCEEEEEEEEEETTTTEEEE
T ss_pred EEeCCHHHHHHHHhCcCC--hhHccccceEEEEecCCCCCCCeEEEEEecCC-Cc-----cceEEEEEEEEeccCCEEEE
Confidence 689999999999999876 578988777776653211111 2444444331 12 123322222223322 34
Q ss_pred EEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEe------cCCccccccCCcccchhhhHH
Q 004828 342 TILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH------SSGWCRWKKNSSTKFEKTTHF 415 (728)
Q Consensus 342 vIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD------~KGwl~w~p~~~s~~~~~i~~ 415 (728)
.|.. ... |-.+|. +-.-+.|... .++|.|+|....+ +.|+. ..-...+...
T Consensus 133 sIie-----G~l-pv~~Y~------sti~V~p~~~-----g~~t~V~Wt~~fes~~~D~p~g~~---~e~a~~~~~~--- 189 (208)
T 3jrs_A 133 SITG-----GEH-RLRNYK------SVTTVHRFEK-----EEEEERIWTVVLESYVVDVPEGNS---EEDTRLFADT--- 189 (208)
T ss_dssp EEEE-----SSS-SCTTCE------EEEEEEEEEC----------CEEEEEEEEEEEECCTTSC---HHHHHHHHHH---
T ss_pred EEee-----CCc-ceeeEE------EEEEEEEccC-----CCccEEEEEEEEEEccCCCCCCCC---HHHHHHHHHH---
Confidence 4433 222 344654 4555677643 2578999998887 66776 1101111111
Q ss_pred HHHHHHHHHHHHhhcC
Q 004828 416 ALLSQVAGLKEYIGAN 431 (728)
Q Consensus 416 ~mL~~Va~LRe~~~~~ 431 (728)
..-+-+++|++.++..
T Consensus 190 vy~~gL~~L~~~~e~~ 205 (208)
T 3jrs_A 190 VIRLNLQKLASITEAM 205 (208)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 2235667777766653
No 126
>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}
Probab=50.52 E-value=2e+02 Score=28.52 Aligned_cols=136 Identities=13% Similarity=0.140 Sum_probs=75.2
Q ss_pred eecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCce---EEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCC---
Q 004828 266 VIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGHY---DVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDG--- 339 (728)
Q Consensus 266 vVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~T---DIiY~~~kp~~~P~~vspRDFV~LRswRr~~DG--- 339 (728)
.|+|||++||.+|.|.+. -..|-+.+.++++ + ++. .|-+..++.. +| --.+.-|--..++..
T Consensus 59 ~I~ApadkVW~lV~Df~~--l~kW~P~V~s~ev-e---Gdg~vGsVR~vt~~~G-~p-----~~~vkErL~~lDde~~~~ 126 (205)
T 3oqu_A 59 HIKAPLHLVWSLVRRFDQ--PQKYKPFVSRCTV-I---GDPEIGSLREVNVKSG-LP-----ATTSTERLELLDDEEHIL 126 (205)
T ss_dssp EESSCHHHHHHHHTCTTC--GGGTCTTEEEEEC-C---SSCCTTCEEEEEECTT-SS-----CSEEEEEEEEEETTTTEE
T ss_pred EEcCCHHHHHHHHhCcCC--hhHcCccceEEEe-e---CCCCCCcEEEEEEcCC-Cc-----cceEEEEEEEEECCCCEE
Confidence 689999999999999876 5689998887753 3 321 2444444431 11 113322222223322
Q ss_pred eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEe-cCCccccccCCcccchhhhHHHHH
Q 004828 340 TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH-SSGWCRWKKNSSTKFEKTTHFALL 418 (728)
Q Consensus 340 sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD-~KGwl~w~p~~~s~~~~~i~~~mL 418 (728)
+|.|..- ..| -+.| .+-.-+.|.+.+ +...|.+.+=...| +.|+. -.-...+...+...=|
T Consensus 127 sYsIieG-----~lp-v~~Y------~ati~V~p~~~d---G~~~T~v~ws~~~D~p~g~t---~e~~~~~v~~v~~~gL 188 (205)
T 3oqu_A 127 GIKIIGG-----DHR-LKNY------SSILTVHPEIIE---GRAGTMVIESFVVDVPQGNT---KDETCYFVEALIRCNL 188 (205)
T ss_dssp EEEEEEE-----SSS-CTTC------EEEEEEEEECCC---C-CEEEEEEEEEEECCTTCC---HHHHHHHHHHHHHHHH
T ss_pred EEEEEec-----Ccc-eeEE------EEEEEEEEccCC---CCceEEEEEEEeccCCCCCC---HHHHHHHHHHHHHHHH
Confidence 4555442 223 3343 455667887741 22478999888999 78887 2111223333444335
Q ss_pred HHHHHHHHHhhcC
Q 004828 419 SQVAGLKEYIGAN 431 (728)
Q Consensus 419 ~~Va~LRe~~~~~ 431 (728)
..++...|-+..+
T Consensus 189 ~~L~~~~e~~~~~ 201 (205)
T 3oqu_A 189 KSLADVSERLASQ 201 (205)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 5566665555443
No 127
>2flh_A Cytokinin-specific binding protein; zeatin, pathogenesis-related proteins, multiple- ligand binding, plant protein; HET: ZEA; 1.20A {Vigna radiata} PDB: 3c0v_A*
Probab=48.68 E-value=1.7e+02 Score=27.17 Aligned_cols=145 Identities=11% Similarity=0.074 Sum_probs=75.1
Q ss_pred EEEEEeecCCHHHHHHH-HHcCCCcccccccCCC-CceEEEEeecCceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCC
Q 004828 261 VKAVGVIDASADTVFEV-VLNLERHQRYEWDMLT-GDLELVDSYDGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQD 338 (728)
Q Consensus 261 ~Ka~gvVdaspe~Vfdl-L~d~~~~~R~eWD~~~-~~~eVVE~lDe~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~D 338 (728)
+..+..|++||++||.+ +.|... .++.|-+.+ .+++++|-=++.=.|.+..+.+ ...+ -++.=|--..+++
T Consensus 5 ~~~e~~i~a~a~kvw~~~v~d~~~-l~pk~~P~~i~s~~~~eGdgg~Gsvr~~~~~~-----g~~~-~~~kErl~~iD~~ 77 (155)
T 2flh_A 5 FNTQTELSVRLEALWAVLSKDFIT-VVPKVLPHIVKDVQLIEGDGGVGTILIFNFLP-----EVSP-SYQREEITEFDES 77 (155)
T ss_dssp EEEEEEESSCHHHHHHHHHTSCTT-HHHHHCTTTEEEEEEEECSSSTTCEEEEEECT-----TSSS-CEEEEEEEEEETT
T ss_pred EEEEEEecCCHHHHHHHHhccccc-ccchhccccceEEEEEcCCCCCCeEEEEEeeC-----CCCC-cEEEEEEEEEeCC
Confidence 33455789999999999 688765 358999855 6667776532222355555543 1123 3444443333333
Q ss_pred C---eEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHH
Q 004828 339 G---TYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHF 415 (728)
Q Consensus 339 G---sYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~ 415 (728)
. +|.|..-.+-. .+-+. ..+-+-+.|.++ +.|.++|.+..+++|-.. +. .....+ ..
T Consensus 78 ~~~~~y~iieg~~l~---~~~~~------~~~~i~v~p~~~------ggs~v~wt~~y~~~~~~~--~~--~~~~~~-~~ 137 (155)
T 2flh_A 78 SHEIGLQVIEGGYLS---QGLSY------YKTTFKLSEIEE------DKTLVNVKISYDHDSDIE--EK--VTPTKT-SQ 137 (155)
T ss_dssp TTEEEEEEEEEGGGG---TTCSE------EEEEEEEEEEET------TEEEEEEEEEEEC-----------CCHHHH-HH
T ss_pred CCEEEEEEEeccccc---cCceE------EEEEEEEEECCC------CCEEEEEEEEEEECCCCc--cC--hhHhhh-HH
Confidence 2 34554443210 12222 234555677553 469999999999887541 21 111110 01
Q ss_pred HHHHHHHHHHHHhhcCC
Q 004828 416 ALLSQVAGLKEYIGANP 432 (728)
Q Consensus 416 ~mL~~Va~LRe~~~~~~ 432 (728)
........|.+|+-+++
T Consensus 138 ~~~~~~k~ie~yll~~~ 154 (155)
T 2flh_A 138 STLMYLRRLERYLSNGS 154 (155)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 23345567777776553
No 128
>2i9y_A Major latex protein-like protein 28 or MLP-like protein 28; AT1G70830, BET V1-like, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=44.15 E-value=1.4e+02 Score=28.14 Aligned_cols=143 Identities=13% Similarity=-0.005 Sum_probs=76.4
Q ss_pred EEEEEeecCCHHHHHHHHH-cCCCcccccccC-CCCceEEEEee-cCceEEEEEEeccCcCCCCCCCCeEEEEEEEEE-c
Q 004828 261 VKAVGVIDASADTVFEVVL-NLERHQRYEWDM-LTGDLELVDSY-DGHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFR-G 336 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~-d~~~~~R~eWD~-~~~~~eVVE~l-De~TDIiY~~~kp~~~P~~vspRDFV~LRswRr-~ 336 (728)
+.....|++||++||+++. +.. ..+.|=+ .+.+++++|-= ++.-.|.+..+.+.. .+-.++..-. .
T Consensus 19 ~~~ev~i~apa~kvw~~~~~d~~--~lpk~~P~~i~s~~~~eGd~gg~Gsir~~~~~~gg--------~~~~~kErl~~i 88 (166)
T 2i9y_A 19 LETDVEIKASADKFHHMFAGKPH--HVSKASPGNIQGCDLHEGDWGTVGSIVFWNYVHDG--------EAKVAKERIEAV 88 (166)
T ss_dssp EEEEEEESSCHHHHHGGGSSCSS--CCCCSCSSCCSSCCCCSCCSCSTTCCCEEEEEETT--------EEEEEEEEEEEE
T ss_pred EEEEEEecCCHHHHHHHHhcccc--cccccccccceEEEEEcCCCCCCCeEEEEEEecCC--------CceEEEEEEEEE
Confidence 4456688999999999965 433 3789998 88888888752 222234443333210 1222222211 2
Q ss_pred CCCeEEEEEeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEecCCccccccCCcccchhhhHHH
Q 004828 337 QDGTYTILQFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIHSSGWCRWKKNSSTKFEKTTHFA 416 (728)
Q Consensus 337 ~DGsYvIa~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD~KGwl~w~p~~~s~~~~~i~~~ 416 (728)
++....+.++-++=+- ..+| +...+-+-+.|.++ ++.|.|+|.+..+.++-. .+. . ..+...
T Consensus 89 D~~~~~~~y~iieGd~---~~~~---~~~~~ti~v~p~~~-----g~gs~v~wt~~ye~~~~~--~~~--p---~~~~~~ 150 (166)
T 2i9y_A 89 EPDKNLITFRVIEGDL---MKEY---KSFLLTIQVTPKPG-----GPGSIVHWHLEYEKISEE--VAH--P---ETLLQF 150 (166)
T ss_dssp ETTTTEEEEEECCTTG---GGTE---EEEEEEEEEEEEEE-----TTEEEEEEEEEEEESSTT--TCC--T---HHHHHH
T ss_pred eccCcEEEEEEEeCCC---CCCe---eEEEEEEEEEECCC-----CCCcEEEEEEEEEECCCC--CCC--H---HHHHHH
Confidence 2333444444443321 1121 23345666778643 246999999999875433 122 1 112223
Q ss_pred HHHHHHHHHHHhhcC
Q 004828 417 LLSQVAGLKEYIGAN 431 (728)
Q Consensus 417 mL~~Va~LRe~~~~~ 431 (728)
+......|.+|+.++
T Consensus 151 ~~~~~k~ie~~l~~~ 165 (166)
T 2i9y_A 151 CVEVSKEIDEHLLAE 165 (166)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhC
Confidence 334556677777654
No 129
>3k3k_A Abscisic acid receptor PYR1; ABA receptor, plant hormone receptor, A sensor, drought tolerance, plant development; HET: A8S; 1.70A {Arabidopsis thaliana} PDB: 3njo_A* 3qn1_A* 3k90_A* 3zvu_A* 3jrq_B* 3kdj_A* 3nef_A* 3neg_A* 3nmn_A* 3kay_A*
Probab=38.50 E-value=3e+02 Score=27.31 Aligned_cols=47 Identities=9% Similarity=0.087 Sum_probs=32.6
Q ss_pred eecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeecCc-eEEEEEEec
Q 004828 266 VIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYDGH-YDVVYGTYD 314 (728)
Q Consensus 266 vVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lDe~-TDIiY~~~k 314 (728)
.|+|||++||.+|.|... -..|=+.+..|++++--++. -.|-+..+.
T Consensus 57 ~I~ApadkVW~lv~dF~~--l~~w~p~V~s~e~~eGd~g~vGsVR~lt~~ 104 (211)
T 3k3k_A 57 RIHAPPELVWSIVRRFDK--PQTYKHFIKSCSVEQNFEMRVGCTRDVIVI 104 (211)
T ss_dssp EESSCHHHHHHHHTCTTC--GGGTCSSEEEEECCTTCCCCTTCEEEEEES
T ss_pred EEcCCHHHHHHHHhCcCC--hhHcCccceEEEEecCCCCCCCcEEEEEec
Confidence 689999999999998865 56898887777766532111 235554454
No 130
>3qrz_A Abscisic acid receptor PYL5; crystal, hormone receptor; 2.60A {Arabidopsis thaliana}
Probab=36.56 E-value=28 Score=35.21 Aligned_cols=111 Identities=12% Similarity=0.048 Sum_probs=53.9
Q ss_pred eecCCHHHHHHHHHcCCCcccccccCCCCceEEEEeec-CceEEEEEEeccCcCCCCCCCCeEEEEEEEEEcCCCeEEEE
Q 004828 266 VIDASADTVFEVVLNLERHQRYEWDMLTGDLELVDSYD-GHYDVVYGTYDPKYLTRWQSKRDFVFSRQWFRGQDGTYTIL 344 (728)
Q Consensus 266 vVdaspe~VfdlL~d~~~~~R~eWD~~~~~~eVVE~lD-e~TDIiY~~~kp~~~P~~vspRDFV~LRswRr~~DGsYvIa 344 (728)
.|+|||++||.+|.|.+. -..|-+.+..+++++-=. +--.|-+..+.+. .| ...-++=+ -. .++..+.+.
T Consensus 85 ~I~ApadkVW~lv~Df~~--pk~w~p~I~s~el~eGdg~gvGSVR~lt~~~G-~p-~~~vkErL----e~-iDde~~~~s 155 (223)
T 3qrz_A 85 MIHAPPESVWALVRRFDN--PKVYKNFIRQCRIVQGDGLHVGDLREVMVVSG-LP-AVSSTERL----EI-LDEERHVIS 155 (223)
T ss_dssp CCSSCHHHHHHHHHCCSS--GGGTCSSCCCCCCCC---CCSSCCCCCCC----CC-CCCCCCCC----SE-EETTTTEEE
T ss_pred EEcCCHHHHHHHHhCCCC--hhHcchhcCEEEEEcCCCCCCCeEEEEEecCC-Cc-cceEEEEE----EE-EeccCCEEE
Confidence 689999999999999865 568999999888875311 1111222222211 01 00011100 01 123334443
Q ss_pred EeeccCCCCCCCCCeeeEEEcCeeEEEEecCCCCCCCCCceEEEEEEeEe-cCCcc
Q 004828 345 QFPAVHKKRPPKSGYRRTKINPSTWEIRSLNLPMGSNGAKCLVTQMLEIH-SSGWC 399 (728)
Q Consensus 345 ~~SV~Hp~~Pp~~G~VRAei~~sGylI~P~~~~~~~~~~~c~VT~I~qvD-~KGwl 399 (728)
++=++ ...| -..| -+-+-+.|.+. +.|.|+|....| +.|+.
T Consensus 156 YsIie-G~~p-~~~Y------~stikV~p~~d------GGT~V~Ws~~f~pp~g~~ 197 (223)
T 3qrz_A 156 FSVVG-GDHR-LKNY------RSVTTLHASDD------EGTVVVESYIVDVPPGNT 197 (223)
T ss_dssp CCCTT-CSSS-CCCC------CCEEEC--------------CCEEEEEECSCSSSC
T ss_pred EEEEe-CCCc-cccE------EEEEEEEEcCC------CCEEEEEEEEEEcCCCCC
Confidence 33332 2222 2232 23366677543 469999999999 68886
No 131
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=34.73 E-value=8.2 Score=41.43 Aligned_cols=8 Identities=38% Similarity=0.787 Sum_probs=0.0
Q ss_pred cccccccc
Q 004828 57 TNSIGHEY 64 (728)
Q Consensus 57 ~~~~g~~~ 64 (728)
.+|+|.+|
T Consensus 325 ~~~~~~~~ 332 (358)
T 2pk2_A 325 LRSLGIDY 332 (358)
T ss_dssp --------
T ss_pred ccccceee
Confidence 45699999
No 132
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=31.87 E-value=4.2e+02 Score=27.59 Aligned_cols=26 Identities=4% Similarity=0.310 Sum_probs=23.9
Q ss_pred CcceeeeccCHHHHHHHHHHHHHHHH
Q 004828 129 SKKGEIACATAGEARKWMEAFDQAKQ 154 (728)
Q Consensus 129 ~~~~~~~a~~~eea~~W~~a~~~a~~ 154 (728)
...+.|.|.|.||-..|+++|.+|+.
T Consensus 341 ~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 341 ERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 45689999999999999999999996
No 133
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=28.67 E-value=49 Score=29.26 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.8
Q ss_pred EEEEEeecCCHHHHHHHHHcCCCcccccccC
Q 004828 261 VKAVGVIDASADTVFEVVLNLERHQRYEWDM 291 (728)
Q Consensus 261 ~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD~ 291 (728)
+.....|++||++||+.|.|... -.+|..
T Consensus 3 i~~~~~i~ap~e~Vw~altd~~~--~~~W~~ 31 (135)
T 3q6a_A 3 IITKMQVDVPRETVFEAFVDPEK--IGGFWF 31 (135)
T ss_dssp EEEEEEESSCHHHHHHHHHCTTT--GGGTSS
T ss_pred EEEEEEeCCCHHHHHHHHcCHHH--hcccCC
Confidence 34566899999999999999875 778865
No 134
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=25.66 E-value=2.2e+02 Score=28.83 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=66.9
Q ss_pred CcceeeeEEEEEcccccccccceeeeEEEeC-------ceeeeeccCCCCCCCCCcce-eeeecCceeEeeccceeeeCc
Q 004828 44 GYFEYFGWVYHMGTNSIGHEYCHLRFLFIRG-------KYVEMYKRDPHENPGIKPIR-RGVIGPTLMVEELGRRRFNHG 115 (728)
Q Consensus 44 ~~~~~eGw~y~~~~~~~g~~~~~~Ryfvl~~-------~~~~~yK~~p~~~~~~~pir-~~~i~~~~rv~d~Gr~~~~~~ 115 (728)
.....||-+ +++.+| .| +.||.||+- -.|..||.+..-. ...+-| |+.+...|-+|- .....+
T Consensus 7 ~~~v~eg~v-k~r~~K---kW-k~rw~vlrk~s~~adcl~L~vYkd~~dr~-k~~~~KaslsL~~~~GlE~---g~~ldk 77 (224)
T 3ml4_A 7 EAALVEGQV-KLRDGK---KW-KSRWLVLRKPSPVADCLLMLVYKDKCERS-KGLRERSSLTLEDICGLEP---ALPYEG 77 (224)
T ss_dssp CCCSEEEEE-EEC------CC-EEEEEEEECSSTTSSCEEEEEESSSHHHH-SCCCCSEEEEECCEEEEEE---EEEETT
T ss_pred cceeEEEee-eeecCC---ce-eeEEEEEEcCCCchheEEEEEEcChhhhh-cCCcccceeehHHhcCccc---cccccC
Confidence 455678864 455555 66 899999974 1677898776533 123334 588999999883 234556
Q ss_pred eEEEEEEEeccCcCcceeeeccCHHHHHHHHHHHHHH
Q 004828 116 DVYVMRLYNRLDESKKGEIACATAGEARKWMEAFDQA 152 (728)
Q Consensus 116 ~~yv~~~yn~~~~~~~~~~~a~~~eea~~W~~a~~~a 152 (728)
.-+++.|... ++-..||+.+.|++..|--.|...
T Consensus 78 ~s~TlAIIc~---d~~~vLAFds~e~l~~W~~~l~~s 111 (224)
T 3ml4_A 78 LAHTLAIICL---SQAVMLGFDSHEAMCAWDTRIRYA 111 (224)
T ss_dssp EEEEEEEEES---SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccEEEEEec---CcEEEEEeCCHHHHHHHHHHHhhc
Confidence 6778888765 445699999999999999888664
No 135
>2leq_A Uncharacterized protein; start domains, structural genomics, PSI-biology, protein STR initiative; NMR {Cytophaga hutchinsonii}
Probab=21.33 E-value=42 Score=29.35 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=24.0
Q ss_pred EEEEEEeecCCHHHHHHHHHcCCCccccccc
Q 004828 260 LVKAVGVIDASADTVFEVVLNLERHQRYEWD 290 (728)
Q Consensus 260 ~~Ka~gvVdaspe~VfdlL~d~~~~~R~eWD 290 (728)
.+.....|++||++||+.|.|... ..+|-
T Consensus 6 ~i~~~~~i~ap~e~Vw~~ltd~~~--~~~W~ 34 (146)
T 2leq_A 6 IAQVKTVINAPIEKVWEALVNPEI--IKEYM 34 (146)
T ss_dssp EEEEEEEECSCHHHHHHHHSCTTH--HHHHS
T ss_pred eEEEEEEECCCHHHHHHHHcCHHH--hceeE
Confidence 466677899999999999999865 67883
Done!