BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004829
(728 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 426 NGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
+GH+ DVA++ + Y ++ EA + AL + G++HPAVA+ LA L
Sbjct: 35 SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544
Y K GK ++++ C+ AL+I K G ++A L ++A + Q+ + E+ +A
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKV-LGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRA 153
Query: 545 LKIYGKTPG-QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588
L+IY G +A + + Y G Y D+ K +++
Sbjct: 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 79/188 (42%), Gaps = 3/188 (1%)
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ-QS 556
C+ AL+ K + G ++A+ L +A +Y+ N+ ++A LLN AL I KT G+
Sbjct: 24 CKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT 616
+A + V+Y G Y ++ K A+ K L+ + L C +
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGK 142
Query: 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676
E + A I GP + +NLA Y G+ DA + + ++ EK
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202
Query: 677 -LGTANPD 683
G+ N D
Sbjct: 203 EFGSVNGD 210
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 23/267 (8%)
Query: 285 AIPVLERSVEIPVLEDGQDHA-LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL 343
A+P+ ++++E G DH +A + L Y + + + L I+ + L
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQNKYKEAAHLLNDALAIREKTL 77
Query: 344 GETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLIC 403
G+ V T +A + + ++ EAE +C+ AL+I + + A + L+C
Sbjct: 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLC 137
Query: 404 DSKGDYEAALEHYVLASMSMAAN---GHELDVASIDCSIGDAYLSLARFDEAIFSYHKAL 460
++G E +E+Y ++ + A + +VA ++ YL ++ +A Y + L
Sbjct: 138 QNQGKAE-EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Query: 461 T-----AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG--IP 513
T F S G+N P +++ + K RDS Y E YG +
Sbjct: 197 TRAHEKEFGSVNGDNKP----IWMHAEEREESKDKRRDSAPYGE-----YGSWYKACKVD 247
Query: 514 SEEIASGLIDIAAIYQSMNELEQAVKL 540
S + + L + A+Y+ +LE A L
Sbjct: 248 SPTVNTTLRSLGALYRRQGKLEAAHTL 274
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%)
Query: 604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663
LN + L + EAA L +A I EK G H +NLA Y G+ +A
Sbjct: 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 664 EILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV 701
+ + + +RE+ LG +PDV + LA L + G+
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKA 143
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 70/168 (41%), Gaps = 1/168 (0%)
Query: 537 AVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK 595
AV L +AL+ KT G +A + + ++Y Y ++ + L A++ + K
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA 655
LN + + +R EA L + A I EK G +H D SNLA
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQN 139
Query: 656 MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRN 703
G+ ++ + + +LG +P+V K LA + G+ ++
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 3/165 (1%)
Query: 426 NGHE-LDVASIDCSIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADL 484
+GH+ DVA++ + Y ++ EA + AL + G++HPAVA+ LA L
Sbjct: 35 SGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94
Query: 485 YHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKA 544
Y K GK ++++ C+ AL+I K G ++A L ++A + Q+ + E+ +A
Sbjct: 95 YGKRGKYKEAEPLCKRALEIREKV-LGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153
Query: 545 LKIYGKTPG-QQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISK 588
L+IY G +A + + Y G Y D+ K +++
Sbjct: 154 LEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 3/188 (1%)
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ-QS 556
C+ AL+ K + G ++A+ L +A +Y+ N+ ++A LLN AL I KT G+
Sbjct: 24 CKQALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP 82
Query: 557 TIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEKKSALFGIALNQMGLACVQRYT 616
+A + V+Y G Y ++ K A+ K LN + L C +
Sbjct: 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK 142
Query: 617 INEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEK 676
E + A I GP + +NLA Y G+ DA + + ++ EK
Sbjct: 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202
Query: 677 -LGTANPD 683
G+ N D
Sbjct: 203 EFGSVNGD 210
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 113/267 (42%), Gaps = 23/267 (8%)
Query: 285 AIPVLERSVEIPVLEDGQDHA-LAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVL 343
A+P+ ++++E G DH +A + L Y + + + L I+ + L
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQNKYKEAAHLLNDALAIREKTL 77
Query: 344 GETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRLMGLIC 403
G+ V T +A + + ++ EAE +C+ AL+I + + A + L+C
Sbjct: 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC 137
Query: 404 DSKGDYEAALEHYVLASMSMAAN---GHELDVASIDCSIGDAYLSLARFDEAIFSYHKAL 460
++G E +E+Y ++ + A + +VA ++ YL ++ +A Y + L
Sbjct: 138 QNQGKAE-EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
Query: 461 T-----AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG--IP 513
T F S G+N P +++ + K RDS Y E YG +
Sbjct: 197 TRAHEKEFGSVNGDNKP----IWMHAEEREESKDKRRDSAPYGE-----YGSWYKACKVD 247
Query: 514 SEEIASGLIDIAAIYQSMNELEQAVKL 540
S + + L + A+Y+ +LE A L
Sbjct: 248 SPTVNTTLRSLGALYRRQGKLEAAHTL 274
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%)
Query: 604 LNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAI 663
LN + L + EAA L +A I EK G H +NLA Y G+ +A
Sbjct: 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105
Query: 664 EILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRV 701
+ + + +RE+ LG +PDV + LA L + G+
Sbjct: 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 70/168 (41%), Gaps = 1/168 (0%)
Query: 537 AVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGEK 595
AV L +AL+ KT G +A + + ++Y Y ++ + L A++ + K
Sbjct: 20 AVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK 79
Query: 596 KSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLAGTYDA 655
LN + + +R EA L + A I EK G +H D +NLA
Sbjct: 80 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN 139
Query: 656 MGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRN 703
G+ ++ + + +LG +P+V K LA + G+ ++
Sbjct: 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQD 187
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 116/275 (42%), Gaps = 21/275 (7%)
Query: 265 QVMCLHVLAAIHCSLGQYNEAIPVLERSVEIPVLEDGQDHA-LAKFAGCMQLGDTYAMLG 323
++ LH L + S G+Y A+P+ ++++E G DH +A + L Y
Sbjct: 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQN 83
Query: 324 QIENSILCYTAGLEIQRQVLGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRE 383
+ +++ L I+ + LG+ V T +A + + ++ EAE +C+ AL+I +
Sbjct: 84 KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK 143
Query: 384 NTSPASIEEAADRRLMGLICDSKGDYEAALEHY--VLASMSMAANGHELDVASIDCSIGD 441
+ A + L+C ++G YE +Y L + +VA ++
Sbjct: 144 VLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203
Query: 442 AYLSLARFDEAIFSYHKALT-----AFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKS 496
YL +F +A Y + LT F S EN P +++ + GK +D S
Sbjct: 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP----IWMHAEEREECKGKQKDGTS 259
Query: 497 YCENALKIYGKPNHG--IPSEEIASGLIDIAAIYQ 529
+ E YG + S + + L ++ A+Y+
Sbjct: 260 FGE-----YGGWYKACKVDSPTVTTTLKNLGALYR 289
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 6/198 (3%)
Query: 396 RRLMGLICD--SKGDYEAA--LEHYVLASMSMAANGHELDVASIDCSIGDAYLSLARFDE 451
R L L+ S+G YE A L L + + DVA++ + Y ++ +
Sbjct: 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKD 87
Query: 452 AIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHG 511
A + AL + G++HPAVA+ LA LY K GK ++++ C+ AL+I K G
Sbjct: 88 AANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV-LG 146
Query: 512 IPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG-QQSTIAGIEAQMGVMYY 570
++A L ++A + Q+ + E+ +AL+IY G +A + + Y
Sbjct: 147 KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYL 206
Query: 571 MTGNYSDSYNTLKSAISK 588
G + + K +++
Sbjct: 207 KQGKFKQAETLYKEILTR 224
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 89/220 (40%), Gaps = 7/220 (3%)
Query: 472 PAVASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSM 531
PA L Y G+ + C+ AL+ K + G ++A+ L +A +Y+
Sbjct: 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTS-GHDHPDVATMLNILALVYRDQ 82
Query: 532 NELEQAVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFR 590
N+ + A LLN AL I KT G+ +A + V+Y G Y ++ K A+
Sbjct: 83 NKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE 142
Query: 591 TSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVYSNLA 650
K LN + L C + E ++ A I + + GP + +NLA
Sbjct: 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLA 202
Query: 651 GTYDAMGRIDDAIEIL-EYVVGMREEKLGTANPDVEDEKR 689
Y G+ A + E + E + G+ V+DE +
Sbjct: 203 SCYLKQGKFKQAETLYKEILTRAHEREFGS----VDDENK 238
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 3/184 (1%)
Query: 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQ-QSTIAGIEAQMGVMYYMTGNYSDSY 579
L ++ Y S E AV L +AL+ KT G +A + + ++Y Y D+
Sbjct: 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAA 89
Query: 580 NTLKSAIS-KFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPY 638
N L A++ + +T G+ A+ LN + + +R EA L + A I EK G
Sbjct: 90 NLLNDALAIREKTLGKDHPAV-AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148
Query: 639 HHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEA 698
H D +NLA G+ ++ + + + + KLG +P+V K LA +
Sbjct: 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQ 208
Query: 699 GRVR 702
G+ +
Sbjct: 209 GKFK 212
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 17/111 (15%)
Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
++G+AY +DEAI Y KAL E +P A + L + Y+K G ++ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKAL--------ELYPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIY 548
+ AL++Y PN+ A ++ Y + ++A++ KAL++Y
Sbjct: 66 YQKALELY--PNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELY 107
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 16/125 (12%)
Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
A + L + Y+K G ++ Y + AL++Y PN+ A ++ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELY--PNN-------AEAWYNLGNAYYKQGDY 59
Query: 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594
++A++ KAL++Y A +G YY G+Y ++ + A+ + + E
Sbjct: 60 DEAIEYYQKALELY-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Query: 595 KKSAL 599
K L
Sbjct: 113 AKQNL 117
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 17/110 (15%)
Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
++G+AY +DEAI Y KAL E P A + L + Y+K G ++ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
+ AL++ PN+ A ++ Y + ++A++ KAL++
Sbjct: 66 YQKALEL--DPNN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 475 ASVFVRLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNEL 534
A + L + Y+K G ++ Y + AL++ PN+ A ++ Y +
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNN-------AEAWYNLGNAYYKQGDY 59
Query: 535 EQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTSGE 594
++A++ KAL++ A +G YY G+Y ++ + A+ + E
Sbjct: 60 DEAIEYYQKALEL-------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Query: 595 KKSAL 599
K L
Sbjct: 113 AKQNL 117
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 83/359 (23%), Positives = 148/359 (41%), Gaps = 87/359 (24%)
Query: 289 LERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDH 348
L+RS L Q+ LA+ LG+ Y GQ++ +I Y L ++ + D
Sbjct: 49 LDRSAHFSTLAIKQNPLLAE--AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI---DG 103
Query: 349 RVGETCRYVA--------EAHVQSLQFDEAEKICQMALDIHRENTSPASIEEAADRRL-- 398
+ VA +A+V +LQ++ + C + D+ + +EEA L
Sbjct: 104 YINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRS-DLGNLLKALGRLEEAKACYLKA 161
Query: 399 -------------MGLICDSKGDYEAALEHYVLASMSMAANGHELDVASIDCSIGDAYLS 445
+G + +++G+ A+ H+ A ++D + DAY++
Sbjct: 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA-------------VTLDPNFLDAYIN 208
Query: 446 LAR-------FDEAIFSYHKALTAFKSAKGENHPAVASVF-----VRLA-DLYHKIGKLR 492
L FD A+ +Y +AL+ H +A V+ + LA D Y + +L+
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALS-LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Query: 493 D--SKSYCE--NALK----------IYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAV 538
+YC NALK Y P+ A L ++A I + +E+AV
Sbjct: 268 PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH--ADSLNNLANIKREQGNIEEAV 325
Query: 539 KLLNKALKIYGKTPGQQSTIAGIEAQMG-----VMYY-----MTGNYSDSY----NTLK 583
+L KAL+++ + S +A + Q G +M+Y ++ ++D+Y NTLK
Sbjct: 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 384
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 16/120 (13%)
Query: 587 SKFRTSGEKKSALFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY 646
+ F T K++ L A + +G +R + EA + + A + P D + Y
Sbjct: 53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL-----KP---DFIDGY 104
Query: 647 SNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRKS 706
NLA A G ++ A++ YV ++ NPD+ + L LLK GR+ K+
Sbjct: 105 INLAAALVAAGDMEGAVQ--AYVSALQY------NPDLYCVRSDLGNLLKALGRLEEAKA 156
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 61/149 (40%), Gaps = 24/149 (16%)
Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
++G+AY +DEAI Y KAL E P A + L + Y+K G ++ Y
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEY 57
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQST 557
+ AL++ A ++ Y + ++A++ KAL++
Sbjct: 58 YQKALEL---------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPR 101
Query: 558 IAGIEAQMGVMYYMTGNYSDSYNTLKSAI 586
A +G YY G+Y ++ + A+
Sbjct: 102 SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 22/135 (16%)
Query: 387 PASIEEAADRRLMGLICDSKGDYEAALEHYVLASMSMAANGHELDV--ASIDCSIGDAYL 444
P + EA + +G +GDY+ A+E+Y A ELD AS ++G+AY
Sbjct: 5 PGNSAEA--WKNLGNAYYKQGDYQKAIEYYQKAL--------ELDPNNASAWYNLGNAYY 54
Query: 445 SLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCENALKI 504
+ +AI Y KAL E P A + R + Y+K G + + + AL++
Sbjct: 55 KQGDYQKAIEYYQKAL--------ELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
Query: 505 YGKPNHGIPSEEIAS 519
PN+ + + +
Sbjct: 107 --DPNNAKAKQNLGN 119
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 17/110 (15%)
Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
++G+AY + +AI Y KAL E P AS + L + Y+K G + + Y
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKAL--------ELDPNNASAWYNLGNAYYKQGDYQKAIEY 65
Query: 498 CENALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
+ AL++ PN+ A Y + ++A++ KAL++
Sbjct: 66 YQKALEL--DPNN-------AKAWYRRGNAYYKQGDYQKAIEDYQKALEL 106
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
++G+AY +DEAI Y KAL E P A + L + Y+K G ++ Y
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKAL--------ELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 498 CENALKIYGKPNH 510
+ AL++ PN+
Sbjct: 66 YQKALEL--DPNN 76
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 438 SIGDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSY 497
++G+AY +DEAI Y KAL E P A + L + Y+K G ++ Y
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKAL--------ELDPRSAEAWYNLGNAYYKQGDYDEAIEY 59
Query: 498 CENALKI 504
+ AL++
Sbjct: 60 YQKALEL 66
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 71/179 (39%), Gaps = 36/179 (20%)
Query: 315 LGDTYAMLGQIENSILCYTAGLEIQRQV------------LGETDHRVGETCRYVAEAHV 362
LG+T +LG + +I+C L+I R++ LG H G++ V
Sbjct: 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDV 152
Query: 363 QSLQFDEAEKICQMALDIHRENTSPASI--EEAADRRLMGLICDSKGDYEAALEHYVLAS 420
+E Q A+D + EN S + + AA R G + ++ HY+L +
Sbjct: 153 GEFP-EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT---------HYLLGN 202
Query: 421 MSMAANGHE--LDVAS----------IDCSIGDAYLSLARFDEAIFSYHKALTAFKSAK 467
A HE L +A ++G+AY+ L F+ A Y K L + K
Sbjct: 203 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 261
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 14/80 (17%)
Query: 518 ASGLIDIAAIYQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMG-----VMYY-- 570
A L ++A I + +E+AV+L KAL+++ + S +A + Q G +M+Y
Sbjct: 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 68
Query: 571 ---MTGNYSDSY----NTLK 583
++ ++D+Y NTLK
Sbjct: 69 AIRISPTFADAYSNMGNTLK 88
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 38/173 (21%)
Query: 315 LGDTYAMLGQIENSILCYTAGLEIQRQV------------LGETDHRVGETCRYVAEAHV 362
LG+T +LG + +I+C L+I R++ LG H G++ +
Sbjct: 91 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS--FGCPGPQ 148
Query: 363 QSLQFDE-AEKICQMALDIHRENTSPASI--EEAADRRLMGLICDSKGDYEAALEHYVLA 419
+ +F E Q A+D++ EN S + + AA R G + ++ HY+L
Sbjct: 149 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT---------HYLLG 199
Query: 420 SMSMAANGHE--LDVAS----------IDCSIGDAYLSLARFDEAIFSYHKAL 460
+ A HE L +A ++G+AY+ L F+ A Y K L
Sbjct: 200 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 252
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE--TCRYVAEAHVQSLQFDE 369
C LG+TY +L E +I + L I + E R+GE C + A+ D+
Sbjct: 268 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQ----ELKDRIGEGRACWSLGNAYTALGNHDQ 323
Query: 370 AEKICQMALDIHRE 383
A + L+I RE
Sbjct: 324 AMHFAEKHLEISRE 337
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 85/201 (42%), Gaps = 28/201 (13%)
Query: 279 LGQYNEAIPVLERSVEIPVLEDGQDHALAKFAGCMQLGDTYAMLGQIENSILCYTAGLEI 338
LG YN+A+ + + L + L + LG+T ++G+ + + +C L +
Sbjct: 99 LGDYNKAMQYHKHDL---TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL 155
Query: 339 QRQV------------LGETDHRVGETCRYVAEAHVQSLQFDEAEKICQMALDIHRENTS 386
RQ+ LG H G +++ + + D E + + A++ ++EN
Sbjct: 156 ARQLGDRLSEGRALYNLGNVYHAKG---KHLGQRNPGKFGDDVKEALTR-AVEFYQENLK 211
Query: 387 PASIEEAADRRLMGLICDS-------KGDYEAALEHYVLASMSMAANGHELDVASIDCSI 439
+ + DR G C + GD++AA+EH+ G + ++
Sbjct: 212 L--MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNL 269
Query: 440 GDAYLSLARFDEAIFSYHKAL 460
G++++ L +F++A Y + L
Sbjct: 270 GNSHIFLGQFEDAAEHYKRTL 290
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 38/173 (21%)
Query: 315 LGDTYAMLGQIENSILCYTAGLEIQRQV------------LGETDHRVGETCRYVAEAHV 362
LG+T +LG + +I+C L+I R++ LG H G++ +
Sbjct: 89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS--FGCPGPQ 146
Query: 363 QSLQFDE-AEKICQMALDIHRENTSPASI--EEAADRRLMGLICDSKGDYEAALEHYVLA 419
+ +F E Q A+D++ EN S + + AA R G + ++ HY+L
Sbjct: 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNT---------HYLLG 197
Query: 420 SMSMAANGHE--LDVAS----------IDCSIGDAYLSLARFDEAIFSYHKAL 460
+ A HE L +A ++G+AY+ L F+ A Y K L
Sbjct: 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE--TCRYVAEAHVQSLQFDE 369
C LG+TY +L E +I + L I + E R+GE C + A+ D+
Sbjct: 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQ----ELKDRIGEGRACWSLGNAYTALGNHDQ 321
Query: 370 AEKICQMALDIHRE 383
A + L+I RE
Sbjct: 322 AMHFAEKHLEISRE 335
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 431 DVASIDCSIGDAYLSLARFDEAIFSYHKAL 460
D I ++ + YLS+ R DEA+ Y KAL
Sbjct: 149 DTPEIRSALAELYLSMGRLDEALAQYAKAL 178
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCS 278
P + P + + + S ENP + ++ + ++SF+I + S +C V +
Sbjct: 626 PNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSAQSPSLFLCASVARVLDSI 685
Query: 279 LGQYNEAIPVLERSVEIPVLEDGQDHAL-AKFAGCMQL 315
L ++ +I + ++ QD+ L +KFAGC +L
Sbjct: 686 LKKFQVSIEGF--IFLLSLITSQQDYELQSKFAGCDKL 721
>pdb|2ODV|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin, Cys To Ala Mutant
Length = 235
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690
+EKE+G H L L ++ + + + L+ G+ EE+L A+ ++ + R
Sbjct: 98 VEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRL 157
Query: 691 LAELLKEAGRVRNR---------KSRSLVTFLDSNSQNLKE 722
LA AG+V R K+ S++ L ++ Q LK+
Sbjct: 158 LA-----AGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKD 193
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCS 278
P + P + + + S ENP + ++ + ++SF+I + S +C V +
Sbjct: 628 PNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSAQSPSLFLCASVARVLDSI 687
Query: 279 LGQYNEAIPVLERSVEIPVLEDGQDHAL-AKFAGCMQL 315
L ++ +I + ++ QD+ L +KFAGC +L
Sbjct: 688 LKKFQVSIEGF--IFLLSLITSQQDYELQSKFAGCDKL 723
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 3/98 (3%)
Query: 219 PALGPFLLKQTREMISSGENPQKALELAKRAMKSFEICANGKPSLEQVMCLHVLAAIHCS 278
P + P + + + S ENP + ++ + ++SF+I + S +C V +
Sbjct: 628 PNVDPDYISTLIDTLVSLENPMRDIDSLIQRLRSFDIYNHSAQSPSLFLCASVARVLDSI 687
Query: 279 LGQYNEAIPVLERSVEIPVLEDGQDHAL-AKFAGCMQL 315
L ++ +I + ++ QD+ L +KFAGC +L
Sbjct: 688 LKKFQVSIEGF--IFLLSLITSQQDYELQSKFAGCDKL 723
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 399 MGLICDSKGDYEAALEH--YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY 456
MG +C D+E AL++ ++ S + L+VAS+ +G Y+ L +
Sbjct: 347 MG-VCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKAL 405
Query: 457 HKALTAFKSAKGENHPAVASV 477
KA+ + A G++HP ++ +
Sbjct: 406 KKAIAIMEVAHGKDHPYISEI 426
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 399 MGLICDSKGDYEAALEH--YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY 456
MG +C D+E AL++ ++ S + L+VAS+ +G Y+ L +
Sbjct: 347 MG-VCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKAL 405
Query: 457 HKALTAFKSAKGENHPAVASV 477
KA+ + A G++HP ++ +
Sbjct: 406 KKAIAIMEVAHGKDHPYISEI 426
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 399 MGLICDSKGDYEAALEH--YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY 456
MG +C D+E AL++ ++ S + L+VAS+ +G Y+ L +
Sbjct: 347 MG-VCLYMQDWEGALQYGQKIIKPYSKHYPLYSLNVASMWLKLGRLYMGLEHKAAGEKAL 405
Query: 457 HKALTAFKSAKGENHPAVASV 477
KA+ + A G++HP ++ +
Sbjct: 406 KKAIAIMEVAHGKDHPYISEI 426
>pdb|2ODU|A Chain A, Crystal Structure Of A Fragment Of The Plakin Domain Of
Plectin
Length = 235
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 631 LEKEYGPYHHDTLGVYSNLAGTYDAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRR 690
+EKE+G H L L ++ + + + L+ G+ EE+L A+ ++ + R
Sbjct: 98 VEKEWGKLHVAILEREKQLRSEFERLECLQRIVTKLQMEAGLCEEQLNQADALLQSDVRL 157
Query: 691 LAELLKEAGRVRNR---------KSRSLVTFLDSNSQNLKE 722
LA AG+V R K+ S++ L ++ Q LK+
Sbjct: 158 LA-----AGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKD 193
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 32/95 (33%)
Query: 440 GDAYLSLARFDEAIFSYHKALTAFKS------------AKGENHPAVASV---------- 477
G+ + +FDEAI Y+KA K KGE A++++
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREM 71
Query: 478 ----------FVRLADLYHKIGKLRDSKSYCENAL 502
F R+ + YHK+G L+ + Y + +L
Sbjct: 72 RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 98/234 (41%), Gaps = 47/234 (20%)
Query: 363 QSLQFDEAEKICQMALDIHRE-----NTSPASIEEAADRRLMGLICDSKGDYEAALEHYV 417
++ QFDEA + A ++H++ N + A E KG+YE A+
Sbjct: 17 KARQFDEAIEHYNKAWELHKDITYLNNRAAAEYE--------------KGEYETAI---- 58
Query: 418 LASMSMAA-NGHEL--DVASIDCS---IGDAYLSLARFDEAIFSYHKALT---------A 462
++++ A G E+ D I S IG+AY L + I Y K+LT
Sbjct: 59 -STLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTK 117
Query: 463 FKSAKGENHPAVASVFV--RLADLYHKIGKLRDSKSYCENALKIYGKPNHGIPSEEIASG 520
++A+ E A A +V A+ GK +KS NA+K Y + P E A G
Sbjct: 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARG 175
Query: 521 LIDIAAIYQSMNELEQAVKLLNKALKIYGKTPG-QQSTIAGIEAQMGVMYYMTG 573
+ AA + +A+ NKA++ K P ++ I AQ+ V Y +
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKATAQIAVKEYASA 226
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 312 CMQLGDTYAMLGQIENSILCYTAGLEIQRQVLGETDHRVGE--TCRYVAEAHVQSLQFDE 369
C LG+TY +L E +I + L I + E R+GE C + A+ D+
Sbjct: 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQ----ELKDRIGEGRACWSLGNAYTALGNHDQ 147
Query: 370 AEKICQMALDIHRE 383
A + L+I RE
Sbjct: 148 AMHFAEKHLEISRE 161
>pdb|1EQ1|A Chain A, Nmr Structure Of An Exchangeable Apolipoprotein-Manduca
Sexta Apolipophorin-Iii
Length = 166
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 647 SNLAGTY-DAMGRIDDAIEILEYVVGMREEKLGTANPDVEDEKRRLAELLKEAGRVRNRK 705
S+L G DA G+ +A+E V E+L A+PDVE E + L+ A + ++
Sbjct: 59 SSLQGAISDANGKAKEALEQARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQE 118
Query: 706 SRSLVTFLDSN 716
S+ L + SN
Sbjct: 119 SQKLAKEVASN 129
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 17/108 (15%)
Query: 440 GDAYLSLARFDEAIFSYHKALTAFKSAKGENHPAVASVFVRLADLYHKIGKLRDSKSYCE 499
G+ + + F+ A+ Y KA+ E +PA A F A Y K+G + CE
Sbjct: 19 GNEQMKVENFEAAVHFYGKAI--------ELNPANAVYFCNRAAAYSKLGNYAGAVQDCE 70
Query: 500 NALKIYGKPNHGIPSEEIASGLIDIAAIYQSMNELEQAVKLLNKALKI 547
A+ I P+ A G + +A S+N+ +AV KAL++
Sbjct: 71 RAICI-------DPAYSKAYGRMGLA--LSSLNKHVEAVAYYKKALEL 109
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 399 MGLICDSKGDYEAALEH--YVLASMSMAANGHELDVASIDCSIGDAYLSLARFDEAIFSY 456
MG +C D+E AL++ ++ S + L+VAS+ +G Y+ L +
Sbjct: 347 MG-VCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKAL 405
Query: 457 HKALTAFKSAKGENHPAVASV 477
KA+ + A G++HP ++ +
Sbjct: 406 KKAIAIMEVAHGKDHPYISEI 426
>pdb|2C35|A Chain A, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|C Chain C, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|E Chain E, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
pdb|2C35|G Chain G, Subunits Rpb4 And Rpb7 Of Human Rna Polymerase Ii
Length = 152
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 533 ELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAISKFRTS 592
E E A LLN + + + QQ+ A E ++ ++ T NY+ ++ K+ T
Sbjct: 35 EFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEVFMKTLNYTARFSRFKNR----ETI 90
Query: 593 GEKKSALFGIALNQMGLACV 612
+S L L++ LAC+
Sbjct: 91 ASVRSLLLQKKLHKFELACL 110
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 60/156 (38%), Gaps = 30/156 (19%)
Query: 528 YQSMNELEQAVKLLNKALKIYGKTPGQQSTIAGIEAQMGVMYYMTGNYSDSYNTLKSAIS 587
Y N + A + ++AL I + P + ++GV+ + G + + A+
Sbjct: 169 YGLTNNSKLAERFFSQALSIAPEDPF-------VXHEVGVVAFQNGEWKTAEKWFLDALE 221
Query: 588 KFRTSGEKKSA-LFGIALNQMGLACVQRYTINEAADLFEEARTILEKEYGPYHHDTLGVY 646
K + G + + + LN +G C + EA D YH L +
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD---------------YHRQALVLI 266
Query: 647 SNLAGTYDAMGRI-------DDAIEILEYVVGMREE 675
A TY A+G I ++A++ +G+R +
Sbjct: 267 PQNASTYSAIGYIHSLXGNFENAVDYFHTALGLRRD 302
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,863,443
Number of Sequences: 62578
Number of extensions: 781556
Number of successful extensions: 1848
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1736
Number of HSP's gapped (non-prelim): 110
length of query: 728
length of database: 14,973,337
effective HSP length: 106
effective length of query: 622
effective length of database: 8,340,069
effective search space: 5187522918
effective search space used: 5187522918
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)